Citrus Sinensis ID: 036087

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340----
Protein Sequence
MGHRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASSKIACNIQLPISSRAFTVSSSQIMSNIVSMEIIRPPVLTLPAPTDQFSLLQPTAIPMPPASEYQNPNFVWNAGDQNSQDYSTNFPNYVSSSVDHLRNGPMSSPPCSSLMNPPGFGLTDENYCMWGTNTNIEVPSLEAKLQQQREKEKNICDRQAPQMEKIDDEANMDCSFDSSSFDHHLDFVDSTLMAGAMCRDFSSFSTDDFAWNF
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHcccccccccHHHHHHHHHHHHHcccccccHccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHcccccHHHHccccccccccccHHHHccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccHccccccccccccccccHHHHcccc
Coil and Loop (DISEMBL)
mghrccskqkvkkglwspeeDEKLLKHITAhghgswssvpklaglqrcgksCRLRWInylrpdlrrgsfteeeEQIIIDVHRILGNRWAQIAkhlpgrtdneVKNYWNSCIKKklmskgldpkthilmpshqRAAAsskiacniqlpissraftvssSQIMSNIVSmeiirppvltlpaptdqfsllqptaipmppaseyqnpnfvwnagdqnsqdystnfpnyvsssvdhlrngpmssppcsslmnppgfgltdenycmwgtntnievpSLEAKLQQQREKEKNIcdrqapqmekiddeanmdcsfdsssfdhhldfvdstlmagamcrdfssfstddfawnf
Flexible Loop (DISEMBL)
mghrccskqkvkkglwspeEDEKLLKHITAhghgswssvpklAGLQRCGKSCRLRWINylrpdlrrgsfteeEEQIIIDVHRILGNRWAQIAKhlpgrtdnevkNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASSKIACNIQLPISSRAFTVSSSQIMSNIVSMEIIRPPVLTLPAPTDQFSLLQPTAIPMPPASEYQNPNFVWNAGDQNSQDYSTNFPNYVSSSVDHLRNGPMSSPPCSSLMNPPGFGLTDENYCMWGTNTNIEVPSLEAKLQQQREKEKNICDRQAPQMEKIDDEANMDCSFDSSSFDHHLDFVDSTLMAGAMCRDFSSFSTDDFAWNF
Low Complexity Region (SEG)
MGHRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASSKIACNIQLPISSRAFTVSSSQIMSNIVSMEIIRPPVLTLPAPTDQFSLLQPTAIPMPPASEYQNPNFVWNAGDQNSQDYSTNFPNYVSSSVDHLRNGPMSSPPCSSLMNPPGFGLTDENYCMWGTNTNIEVPSLEAKLQQQREKEKNICDRQAPQMEKIDDEANMdcsfdsssfdhhldfvdsTLMAGAMCRDFSSFSTDDFAWNF
Disordered region (IsUnstruct)
***********************LLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLD**THIL**********SKIACNIQLPISSRAFTVSSSQIMSNIVSMEIIRPPVLTLPAPTDQFSLL*****************FVW*******************************************FGLTDENYCMWGTNTNIEV******************************************FDHHLDFVDSTLMAGAMCRDFSSFSTDDF****
Disordered Region (DISOPRED)
**HRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKG*************************************************************************************************************************************LTDEN*C***********************************EKIDDE********SSSFDHHLDFVDSTLMAGAMCRDFSSFSTDDFAWNF
Disordered Region (DISEMBL)
****************SPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMP*********KIACNIQLPISSRAFTVSSSQIMSNIVSMEIIRPPVLTLPAPTDQFSLLQPTAIPMPPASEYQNPNFVWNAGDQNSQDYSTNFPNYVSSSVDHLRNGPMSSPPCSSLMNPPGFGLTDENYCMWGTNTNIEVPSLEA***********ICDRQAPQMEKIDDEANMDCSFDSSSFDHHLDFVDSTLMAGAMCRDFSSFSTDDFAWNF
Disordered Region (DISPRO)
**HRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMP************************************************************************NPNFVW**GDQNSQDYSTNFPNYVSSSVDHLRNGPMSSPPCSSLMNPPGFGLTDENYCMWGTNTNIEVPSL************************************SSSFDHHLDFVDSTLMAGAMCRDFSSFSTDDFAWNF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGHRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASSKIACNIQLPISSRAFTVSSSQIMSNIVSMEIIRPPVLTLPAPTDQFSLLQPTAIPMPPASEYQNPNFVWNAGDQNSQDYSTNFPNYVSSSVDHLRNGPMSSPPCSSLMNPPGFGLTDENYCMWGTNTNIEVPSLEAKLQQQREKEKNICDRQAPQMEKIDDEANMDCSFDSSSFDHHLDFVDSTLMAGAMCRDFSSFSTDDFAWNF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	344	2.2.26 [Sep-21-2011]
Q8LPH6	352	Transcription factor MYB8	no	no	0.363	0.355	0.761	8e-57
P20027	302	Myb-related protein Hv33	N/A	no	0.345	0.394	0.731	2e-49
P81395	274	Myb-related protein 330 O	N/A	no	0.351	0.441	0.661	2e-46
Q38851	236	Transcription repressor M	no	no	0.436	0.635	0.538	2e-46
Q9SZP1	282	Transcription repressor M	no	no	0.508	0.620	0.469	2e-46
P81393	232	Myb-related protein 308 O	N/A	no	0.351	0.521	0.644	4e-46
P80073	421	Myb-related protein Pp2 O	N/A	no	0.366	0.299	0.622	8e-46
Q9S9K9	257	Transcription factor MYB3	no	no	0.360	0.482	0.620	1e-45
O49608	274	Transcription factor MYB3	no	no	0.351	0.441	0.644	2e-45
Q8GWP0	360	Transcription factor MYB3	no	no	0.351	0.336	0.631	4e-45

>sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1

 Score =  221 bits (562), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 96/126 (76%), Positives = 112/126 (88%), Gaps = 1/126 (0%)

Query: 1   MG-HRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
           MG H CC KQK++KGLWSPEEDEKLL +IT HGHG WSSVPKLAGLQRCGKSCRLRWINY
Sbjct: 1   MGRHSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query: 60  LRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKG 119
           LRPDL+RG+F+++EE +II++H  LGNRW+QIA  LPGRTDNE+KN+WNSC+KKKL  KG
Sbjct: 61  LRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKG 120

Query: 120 LDPKTH 125
           +DP TH
Sbjct: 121 IDPTTH 126

Probable transcription factor.
Arabidopsis thaliana (taxid: 3702)

>sp|P20027|MYB3_HORVU Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3

 Score =  196 bits (499), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 87/119 (73%), Positives = 101/119 (84%)

Query: 10  KVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSF 69
           KV+KGLWSPEEDEKL  HI  HG G WSSVP+LA L RCGKSCRLRWINYLRPDL+RG F
Sbjct: 13  KVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCF 72

Query: 70  TEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILM 128
           +++EE  I+ +H+ILGNRW+QIA HLPGRTDNE+KN+WNSCIKKKL  +G+DP TH  M
Sbjct: 73  SQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLRQQGIDPATHKPM 131

Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Hordeum vulgare (taxid: 4513)

>sp|P81395|MYB30_ANTMA Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 80/121 (66%), Positives = 101/121 (83%)

Query: 5   CCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDL 64
           CC K    KG W+ EED++L+ +I AHG G W S+PK AGL RCGKSCRLRWINYLRPDL
Sbjct: 6   CCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDL 65

Query: 65  RRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKT 124
           +RG+FTEEE++III +H +LGN+W+ IA  LPGRTDNE+KNYWN+ IK+KL+S+G+DP+T
Sbjct: 66  KRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKLVSRGIDPQT 125

Query: 125 H 125
           H
Sbjct: 126 H 126

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 84/156 (53%), Positives = 113/156 (72%), Gaps = 6/156 (3%)

Query: 5   CCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDL 64
           CC K    KG W+ EED++L+ +I  HG G W S+PK AGL RCGKSCRLRWINYLRPDL
Sbjct: 6   CCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYLRPDL 65

Query: 65  RRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKT 124
           +RG+FT++E+QIII +H +LGN+W+ IA  LPGRTDNE+KNYWN+ IK+KL+S G+DP+T
Sbjct: 66  KRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDPQT 125

Query: 125 HILMPSHQRAAASSKIACNIQLPISSRAFTVSSSQI 160
                 H++   S  ++  + +PI + A   S S +
Sbjct: 126 ------HRQINESKTVSSQVVVPIQNDAVEYSFSNL 155

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  186 bits (472), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/183 (46%), Positives = 126/183 (68%), Gaps = 8/183 (4%)

Query: 5   CCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDL 64
           CC K    KG W+ EEDE+L+ +I AHG G W S+PK AGL RCGKSCRLRWINYLRPDL
Sbjct: 6   CCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDL 65

Query: 65  RRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKT 124
           +RG+FTEEE+++II +H +LGN+W+ IA  LPGRTDNE+KNYWN+ I++KL+++G+DP +
Sbjct: 66  KRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDPTS 125

Query: 125 HILMPSHQRAAASSKIACNIQLPISSRAFTVSSSQIMSNIVSMEIIRPPVLTLPAPTDQF 184
           H   P  + +A+       ++ P++S    +S     ++   +E     + + P  +++ 
Sbjct: 126 H--RPIQESSASQDSKPTQLE-PVTSNTINIS----FTSAPKVETFHESI-SFPGKSEKI 177

Query: 185 SLL 187
           S+L
Sbjct: 178 SML 180

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score =  185 bits (470), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 78/121 (64%), Positives = 100/121 (82%)

Query: 5   CCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDL 64
           CC K    KG W+ EED++L+ +I AHG G W S+PK AGL RCGKSCRLRWINYLRPDL
Sbjct: 6   CCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDL 65

Query: 65  RRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKT 124
           +RG+FTEEE+++II +H +LGN+W+ IA  LPGRTDNE+KNYWN+ I++KL+S+G+DP T
Sbjct: 66  KRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPTT 125

Query: 125 H 125
           H
Sbjct: 126 H 126

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|P80073|MYB2_PHYPA Myb-related protein Pp2 OS=Physcomitrella patens subsp. patens GN=PP2 PE=2 SV=1

 Score =  184 bits (467), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 79/127 (62%), Positives = 102/127 (80%), Gaps = 1/127 (0%)

Query: 1   MGHR-CCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
           MG + CC K  +++G W+ EED+KL+ HIT +G   W ++PKLAGL RCGKSCRLRW NY
Sbjct: 1   MGRKPCCEKVGLRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAGLLRCGKSCRLRWTNY 60

Query: 60  LRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKG 119
           LRPDL+RG F+E EE +I+D+H  LGNRW++IA  LPGRTDNE+KNYWN+ +KK+L S+G
Sbjct: 61  LRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLRSQG 120

Query: 120 LDPKTHI 126
           LDP TH+
Sbjct: 121 LDPNTHL 127

Possible transcription activator.

Physcomitrella patens subsp. patens (taxid: 145481)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  183 bits (465), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 77/124 (62%), Positives = 102/124 (82%)

Query: 5   CCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDL 64
           CC K  + KG W+ EED+ L+ +I  HG G W S+P+ AGLQRCGKSCRLRW+NYLRPDL
Sbjct: 6   CCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDL 65

Query: 65  RRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKT 124
           +RG+FTEEE+++II +H +LGN+W+ IA  LPGRTDNE+KNYWN+ IK+KL+S+G+DP +
Sbjct: 66  KRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSRGIDPNS 125

Query: 125 HILM 128
           H L+
Sbjct: 126 HRLI 129

Arabidopsis thaliana (taxid: 3702)

>sp|O49608|MYB32_ARATH Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1

 Score =  183 bits (464), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 78/121 (64%), Positives = 98/121 (80%)

Query: 5   CCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDL 64
           CC K    KG W+ EED+KL+ +I AHG G W S+P+ AGLQRCGKSCRLRWINYLRPDL
Sbjct: 6   CCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDL 65

Query: 65  RRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKT 124
           +RG+FT EE+ +II +H +LGN+W+ IA  LPGRTDNE+KNYWN+ +K+KL+ KG+DP T
Sbjct: 66  KRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGIDPAT 125

Query: 125 H 125
           H
Sbjct: 126 H 126

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1

 Score =  182 bits (461), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 77/122 (63%), Positives = 100/122 (81%), Gaps = 1/122 (0%)

Query: 5   CCSKQK-VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63
           CC + K VKKG W PEED+KL  +I  +G+G+W S+PKLAGL RCGKSCRLRW+NYLRPD
Sbjct: 6   CCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMNYLRPD 65

Query: 64  LRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPK 123
           +RRG F++ EE  I+ +H +LGN+W++IA HLPGRTDNE+KNYWN+ ++KKL+  G+DP 
Sbjct: 66  IRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQMGIDPV 125

Query: 124 TH 125
           TH
Sbjct: 126 TH 127

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
359494668	337	PREDICTED: transcription factor MYB23-li	0.953	0.973	0.569	9e-93
297736102	349	unnamed protein product [Vitis vinifera]	0.936	0.922	0.556	4e-88
255550737	319	r2r3-myb transcription factor, putative	0.898	0.968	0.519	5e-87
224109100	307	predicted protein [Populus trichocarpa]	0.892	1.0	0.543	3e-86
224101309	277	predicted protein [Populus trichocarpa]	0.796	0.989	0.533	1e-83
356528637	327	PREDICTED: protein ODORANT1-like [Glycin	0.909	0.957	0.477	1e-75
356555238	325	PREDICTED: transcription factor MYB23-li	0.895	0.947	0.468	5e-75
225424971	345	PREDICTED: uncharacterized protein LOC10	0.953	0.950	0.471	4e-74
255578521	329	r2r3-myb transcription factor, putative	0.880	0.920	0.477	8e-74
224072395	341	predicted protein [Populus trichocarpa]	0.886	0.894	0.470	6e-72

>gi|359494668|ref|XP_002265355.2| PREDICTED: transcription factor MYB23-like [Vitis vinifera] gi|147854236|emb|CAN83435.1| hypothetical protein VITISV_010137 [Vitis vinifera]

 Score =  346 bits (887), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 201/353 (56%), Positives = 250/353 (70%), Gaps = 25/353 (7%)

Query: 1   MGHRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
           MGHRCCSKQKVK+GLWSPEEDEKL+++ITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL
Sbjct: 1   MGHRCCSKQKVKRGLWSPEEDEKLIRYITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60

Query: 61  RPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGL 120
           RP+L+RGSF+ +EEQ IIDVHRILGNRWAQIAKHLPGRTDNEVKN+WNSCIKKKL+S+GL
Sbjct: 61  RPELKRGSFSAQEEQSIIDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGL 120

Query: 121 DPKTHILMPSHQRAAASSKIACNIQLPISSRAFTVSSSQIMSNIVSMEIIRPP--VLTLP 178
           DPKTH L+ SHQR   S+K+ C++  P        + +Q M++  SME+ R P  V   P
Sbjct: 121 DPKTHNLISSHQR-NTSNKVVCSLPQPHQQPFPVFTVNQQMTDDASMEVNRLPPFVTLPP 179

Query: 179 APTDQFSLLQPTAIPMPPASEYQNPNFVWNAGDQNSQDYSTNFPNYVSSSVDHLRNGPMS 238
            P  Q SL Q  AI   P SEYQNPN VW A DQ+SQ Y+ +FP   S          + 
Sbjct: 180 LPPTQPSLQQTMAI---PNSEYQNPNPVWTAKDQSSQ-YTISFPCGSSIGSTP-----II 230

Query: 239 SPPCSSLMNPPGFGLTDENYCMWGTNTN-IEVPSLEAKLQQQREKEKNICDRQAPQMEKI 297
           S   SS +NP GFG  DEN  +W  +   +E P LE ++Q  + ++++   +    + ++
Sbjct: 231 SSSSSSSVNPFGFGFLDENL-IWNAHVEPLEGPRLE-QVQTHQYQDQHDQQKNKINIGEM 288

Query: 298 DDE------ANMDCSFDSSSFDHHLDFVDSTLMAGAMCRDFSSFSTDDFAWNF 344
            ++       ++D SFDSSSFD  L+FV+STL++GA+CRD SS   DD AWNF
Sbjct: 289 GNDHEQKCGQDIDVSFDSSSFD--LEFVESTLLSGAICRDLSSM--DDLAWNF 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736102|emb|CBI24140.3| unnamed protein product [Vitis vinifera]

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 192/345 (55%), Positives = 243/345 (70%), Gaps = 23/345 (6%)

Query: 1   MGHRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
           MGHRCCSKQKVK+GLWSPEEDEKL+++ITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL
Sbjct: 1   MGHRCCSKQKVKRGLWSPEEDEKLIRYITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60

Query: 61  RPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGL 120
           RP+L+RGSF+ +EEQ IIDVHRILGNRWAQIAKHLPGRTDNEVKN+WNSCIKKKL+S+GL
Sbjct: 61  RPELKRGSFSAQEEQSIIDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGL 120

Query: 121 DPKTHILMPSHQRAAASSKIACNIQLPISSRAFTVSSSQIMSNIVSMEIIRPP--VLTLP 178
           DPKTH L+ SHQR   S+K+ C++  P        + +Q M++  SME+ R P  V   P
Sbjct: 121 DPKTHNLISSHQR-NTSNKVVCSLPQPHQQPFPVFTVNQQMTDDASMEVNRLPPFVTLPP 179

Query: 179 APTDQFSLLQPTAIPMPPASEYQNPNFVWNAGDQNSQDYSTNFPNYVSSSVDHLRNGPMS 238
            P  Q SL Q  AI   P SEYQNPN VW A DQ+SQ Y+ +FP   S     + +    
Sbjct: 180 LPPTQPSLQQTMAI---PNSEYQNPNPVWTAKDQSSQ-YTISFPCGSSIGSTPIISSSS- 234

Query: 239 SPPCSSLMNPPGFGLTDENYCMWGTNTN-IEVPSLEAKLQQQREKEKNICDRQAPQMEKI 297
               SS +NP GFG  DEN  +W  +   +E P LE ++Q  + ++++   +    + ++
Sbjct: 235 ----SSSVNPFGFGFLDENL-IWNAHVEPLEGPRLE-QVQTHQYQDQHDQQKNKINIGEM 288

Query: 298 DDE------ANMDCSFDSSSFDHHLDFVDSTLMAGAMCRDFSSFS 336
            ++       ++D SFDSSSFD  L+FV+STL++GA+C+  S  S
Sbjct: 289 GNDHEQKCGQDIDVSFDSSSFD--LEFVESTLLSGAICQVLSLVS 331

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550737|ref|XP_002516417.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223544452|gb|EEF45972.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  327 bits (838), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 184/354 (51%), Positives = 234/354 (66%), Gaps = 45/354 (12%)

Query: 1   MGHRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
           MGHRCCSKQKVK+GLWSPEEDEKL K+IT +GHGSWSSVPKLAGLQRCGKSCRLRWINYL
Sbjct: 1   MGHRCCSKQKVKRGLWSPEEDEKLGKYITTYGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60

Query: 61  RPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGL 120
           RPDL+RG+F+ +EEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKN+WNSCIKKKL+S+GL
Sbjct: 61  RPDLKRGTFSAQEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGL 120

Query: 121 DPKTHILMPSHQRAAASSKIACNIQLPISSRA----FTVSSSQIMSNIVSMEIIRPPVLT 176
           DP+TH L+PSHQRA     ++ N Q   S       F++ +++      SM+I  PP+LT
Sbjct: 121 DPRTHNLIPSHQRANIKKVVSNNSQSHQSQPHQQTKFSIITAKSKMTDTSMQITDPPILT 180

Query: 177 LPAPTDQFSLLQPTAIPMPPASEYQNPNFVWNAGDQNSQDYSTNFPNYVSSSVDHLRNGP 236
           LP+  +   + QP++              ++++ DQN    S       S+++    N  
Sbjct: 181 LPSLNN---IQQPSSAS------------IFSSNDQNLHILS-------STTI----NDS 214

Query: 237 MSSPPCSSLMNPPGFGLTDENYCMWGTNT-----NIEVPSLEAKLQQQREKEKNICDRQA 291
              PP SS MNP GFGL D+N C W TN        EVP++E  LQ Q  +     D   
Sbjct: 215 TIFPPPSSSMNPTGFGLFDDN-CFWSTNNCTISEPFEVPTVEV-LQAQELQLNQAYDEVD 272

Query: 292 PQMEKIDDEANMDCSFDSSSFDHHLDFVDSTLMAGA-MCRDFSSFSTDDFAWNF 344
              + ++D   MD SFDSSSF    +FV+S++++ + +C + +    DD AWNF
Sbjct: 273 EANKGVED---MDASFDSSSFG--FEFVESSMLSNSVLCHELNVM--DDLAWNF 319

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109100|ref|XP_002315083.1| predicted protein [Populus trichocarpa] gi|222864123|gb|EEF01254.1| predicted protein [Populus trichocarpa]

 Score =  324 bits (831), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 187/344 (54%), Positives = 232/344 (67%), Gaps = 37/344 (10%)

Query: 1   MGHRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
           MGHRCCSKQ+V++GLWSPEEDEKL+K+I  HGHGSWSSVPK AGL+RCGKSCRLRW+NYL
Sbjct: 1   MGHRCCSKQRVQRGLWSPEEDEKLVKYIATHGHGSWSSVPKFAGLKRCGKSCRLRWLNYL 60

Query: 61  RPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGL 120
           RP+L+RG F+  EEQ+IID HRILGNRW+QI+KHLPGRTDNEVKN+WNS IKKKLM++GL
Sbjct: 61  RPELKRGCFSALEEQVIIDAHRILGNRWSQISKHLPGRTDNEVKNFWNSRIKKKLMAQGL 120

Query: 121 DPKTHILMPSHQRAAASSKIACNIQLPISSRAFTVSSSQIMSNIVSMEIIRPPVLTLPAP 180
           DPKTH L+PSHQRAA  +K+ACNI  P + +  ++ S       VSME I PP+LTL +P
Sbjct: 121 DPKTHNLIPSHQRAA--NKVACNIS-PSNQQPLSIISQDSKMKDVSME-INPPILTLASP 176

Query: 181 TDQFSLLQPTAIPMPPASEYQNPNFVWNAGDQNSQDYSTNFPNYVSSSVDHLRNGPMSSP 240
                  + + I              WN   QNS D S+ FP    SS+++ R  P S  
Sbjct: 177 YRSHGSTRLSVI--------------WNVNTQNSYD-SSLFP--CVSSIENSRVSPSS-- 217

Query: 241 PCSSLMNPPGFGLTDENYCMWGTNTNIEVPSLEAKLQQQREKEKNICDRQAPQMEKIDDE 300
             S+ +NP GFGL DE+ C W   +NI  P    KL +    +      Q  Q+ KI  +
Sbjct: 218 --STSVNPTGFGLLDED-CFWSC-SNIVEPFEATKLFEGMRSQD-----QENQLNKIFHD 268

Query: 301 ANMDCSFDSSSFDHHLDFVDSTLMAGAMCRDFSSFSTDDFAWNF 344
            NMD SFD+SS+D  L+ VDSTL  G++CRD  S   DD +WNF
Sbjct: 269 -NMDASFDTSSYD--LELVDSTLFPGSICRDLGSM--DDLSWNF 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101309|ref|XP_002312226.1| predicted protein [Populus trichocarpa] gi|222852046|gb|EEE89593.1| predicted protein [Populus trichocarpa]

 Score =  316 bits (809), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 185/347 (53%), Positives = 218/347 (62%), Gaps = 73/347 (21%)

Query: 1   MGHRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
           MGHRCC+KQKVK+GLWSPEEDEKL+K+IT+HGHGSWSSVPK AGL+RCGKSCRLRWINYL
Sbjct: 1   MGHRCCNKQKVKRGLWSPEEDEKLVKYITSHGHGSWSSVPKFAGLKRCGKSCRLRWINYL 60

Query: 61  RPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGL 120
           RP+L+RGSF+ EEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKN+WNSCIKKKLM++GL
Sbjct: 61  RPELKRGSFSAEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLMAQGL 120

Query: 121 DPKTHILMPSHQRAAASSKIACNIQLPISSRAFTVSSSQIMSNIVSMEIIRPPVLTLPAP 180
           DPKTH L+PSHQRAA  +K+ACNI    + + F++ +        SMEI  PP+LTLP+P
Sbjct: 121 DPKTHNLIPSHQRAA--NKVACNISQS-NQQPFSIITLDSKMKDYSMEI-NPPILTLPSP 176

Query: 181 TDQFSLLQPTAIPMPPASEYQNPNFVWNAGDQNSQDYSTNFPNYVSSSVDHLRNGPMSSP 240
                         P  S  Q P              +T+ P                  
Sbjct: 177 -------------YPSNSSTQPPLL----------QTTTSLP-----------------L 196

Query: 241 PCSSLMNPPGFGLTDENYCMWGTNTNIEVPSLEAKLQQQREKEKN-ICDRQAPQMEK-ID 298
           P SS  NP                        E    Q +E + N ICD Q     K + 
Sbjct: 197 PTSSYQNPTKV--------------------FEVMQSQDQENQPNKICDAQIMDNTKGVH 236

Query: 299 DEANMDCSFDSSSFDHHLDFVDST-LMAGAMCRDFSSFSTDDFAWNF 344
           D  NMD SFD++S+D  L+FVDST L+ G+MCRD SS   DD AWNF
Sbjct: 237 D--NMDASFDTTSYD--LEFVDSTILLPGSMCRDLSSM--DDLAWNF 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528637|ref|XP_003532906.1| PREDICTED: protein ODORANT1-like [Glycine max]

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 171/358 (47%), Positives = 216/358 (60%), Gaps = 45/358 (12%)

Query: 1   MGHRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
           MGHRCCSKQK+K+GLWSPEEDEKLL++I  HGH SWSSVPK AGLQRCGKSCRLRWINYL
Sbjct: 1   MGHRCCSKQKIKRGLWSPEEDEKLLRYINTHGHKSWSSVPKFAGLQRCGKSCRLRWINYL 60

Query: 61  RPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGL 120
           RPDL+RGSFT EEEQIIID+HRILGNRWAQIAKHLPGRTDNEVKN+WNSCIKKKL+S+GL
Sbjct: 61  RPDLKRGSFTAEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGL 120

Query: 121 DPKTHILMPSHQRAAASSKIACNIQLPISSRAFTVSSSQIMSNIVSMEIIRPPVLTLPAP 180
           DP+TH L+ SH+R++     AC I            S+ I  N  S+ I+   +   P  
Sbjct: 121 DPQTHTLLSSHRRSS-----ACTI------------SNNIHQNSNSIFIMSSHIPNAPFE 163

Query: 181 TDQFSLLQPTAIPMPPASEYQNPNFVWNAGDQNSQDYSTNFPNYVSSSVDHLRNGPM--- 237
           T   +    + +P PP      PN V       S ++ T     +S   + L++ P    
Sbjct: 164 TTCQTF---STLPKPP------PNIVQTPSSIVSSEFQT-LSTILSDDGEPLQHLPYELL 213

Query: 238 ---SSPPCS-SLMNPPGFGL-TDENYCMWGTNTNIE---VPSLEAK---LQQQREKEKNI 286
              ++  CS + MNP    L  D+N   W +  N+      +LE     LQ Q+EK K  
Sbjct: 214 MENATNICSPTYMNPSAVELCNDDNNVNWVSRLNVHDFSAQTLEEGAQVLQVQQEKGKTF 273

Query: 287 CDRQAPQMEKIDDEANMDCSFDSSSFDHHLDFVDSTLMAGAMCRDFSSFSTDDFAWNF 344
            D+ +   E          SF+SS+FD  L F++S L +  +  D +    D+ AWNF
Sbjct: 274 DDKGSDVREANKGNLETSVSFESSNFD--LGFLESVLTSEFISHDLNCM--DELAWNF 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555238|ref|XP_003545941.1| PREDICTED: transcription factor MYB23-like [Glycine max]

 Score =  287 bits (734), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 169/361 (46%), Positives = 214/361 (59%), Gaps = 53/361 (14%)

Query: 1   MGHRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
           MGHRCCSKQK+K+GLWSPEEDEKLL++I  HG  SWSSVPK AGLQRCGKSCRLRWINYL
Sbjct: 1   MGHRCCSKQKIKRGLWSPEEDEKLLRYINTHGQKSWSSVPKFAGLQRCGKSCRLRWINYL 60

Query: 61  RPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGL 120
           RPDL+RGSFT EEEQIIID+HRILGNRWAQIAKHLPGRTDNEVKN+WNSCIKKKL+S+GL
Sbjct: 61  RPDLKRGSFTAEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGL 120

Query: 121 DPKTHILMPSHQRAAASSKIACNI-QLPISSRAFTVSSSQIMSNIVSMEIIRPPVLTLPA 179
           DP+TH L+ SH+R++      C I  +  +S +  + SS I            P   L  
Sbjct: 121 DPQTHTLLSSHRRSS-----VCTISNIHQNSNSIFIMSSHI------------PNAPLEN 163

Query: 180 PTDQFSLLQPTAIPMPPASEYQNPNFVWNAGDQNSQDYSTNFPNYVSS--------SVDH 231
            +  FS L     P PPA+  Q P          S D S+ F    S+        + + 
Sbjct: 164 TSKTFSTL-----PKPPANIVQIP----------SVDVSSEFQTTTSNNGEPRQHLTYEL 208

Query: 232 LRNGPMSSPPCSSLMNPPGFGL-TDENYCMWGTNTNIE---VPSLE----AKLQQQREKE 283
           L    +++    + MNP    L  ++N   W +  N+E     +LE     ++Q Q EK+
Sbjct: 209 LMENAITNICSPTYMNPSAVELFNNDNNVNWVSTVNVEDFSAQTLEEGTQVQVQVQHEKD 268

Query: 284 KNICDRQAPQMEKIDDEANMDCSFDSSSFDHHLDFVDSTLMAGAMCRDFSSFSTDDFAWN 343
           K   D      E  +       SF+SS+FD  L  ++S L +  +  DF+    D+ AWN
Sbjct: 269 KTCEDMGIDVREANNGNIETSASFESSNFDFGL--LESVLTSEFISYDFNCM--DELAWN 324

Query: 344 F 344
           F
Sbjct: 325 F 325

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424971|ref|XP_002265578.1| PREDICTED: uncharacterized protein LOC100258147 [Vitis vinifera] gi|297738187|emb|CBI27388.3| unnamed protein product [Vitis vinifera]

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 168/356 (47%), Positives = 225/356 (63%), Gaps = 28/356 (7%)

Query: 1   MGHRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
           MGH CCSKQKVK+GLWSPEEDEKL+++IT +GHG WSSVPKLAGLQRCGKSCRLRWINYL
Sbjct: 1   MGHHCCSKQKVKRGLWSPEEDEKLIRYITTNGHGCWSSVPKLAGLQRCGKSCRLRWINYL 60

Query: 61  RPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGL 120
           RPDL+RGSF+ +EE+ IIDVHRI+GN+WAQIAK+LPGRTDNEVKN+WNSCIKKKL+++GL
Sbjct: 61  RPDLKRGSFSAQEERTIIDVHRIVGNKWAQIAKYLPGRTDNEVKNFWNSCIKKKLIAQGL 120

Query: 121 DPKT-HILMPSHQ-RAAASSKIACNI----QLPISSRAFTVSSSQIMSNIVSMEIIRPPV 174
           DP T H+L+P  Q     ++  AC +    Q P ++  F+ ++  I    + M+     +
Sbjct: 121 DPNTHHLLLPIDQINNNNNNTNACTLSHIHQQP-TALVFSSNTQMIKDAKMDMKSPFLTL 179

Query: 175 LTLPAPTDQFSLLQP---TAIPMPPASEYQNPNFVW--NAGDQNSQDYSTNFPNYVSSSV 229
             LP P D  + + P     I   P  E+ NPN+VW     DQN         + V   V
Sbjct: 180 PPLPPPPDTSNSIHPPSLHGISAIPPFEFLNPNYVWMTTVSDQNQ--------HAVMELV 231

Query: 230 DHLRNGPMSSPPCSSLMNPPGFGLTDENYCMWGTNTNIEVPSLEAKLQQQREKEKNICDR 289
           +    G  S+P     +NP GF + +ENY M  T  ++E P  + +  QQ+++E  +C+ 
Sbjct: 232 NRSSMG-RSTPIGPYQINPSGFEVLEENY-MRDTIASLE-PRKQLEGVQQQQEEDKVCEG 288

Query: 290 QAPQMEKIDDEANMDCSFDSSSFDHHLDFVDSTLM---AGAMCRDFSSFSTDDFAW 342
           +A   +++ +  N+D SFDS SFD  L++  S L+    G  C   SS   D   W
Sbjct: 289 KADNSKELRNGENIDNSFDSCSFDLELEY--SGLLPCGTGMYCSSTSSSCIDQLTW 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578521|ref|XP_002530124.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223530378|gb|EEF32268.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  283 bits (724), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 173/362 (47%), Positives = 216/362 (59%), Gaps = 59/362 (16%)

Query: 1   MGHRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
           MGH+CCSKQKVK+GLWSPEEDEKL+K IT HGHGSWSSVPKLAGL RCGKSCRLRWINYL
Sbjct: 1   MGHQCCSKQKVKRGLWSPEEDEKLIKFITTHGHGSWSSVPKLAGLHRCGKSCRLRWINYL 60

Query: 61  RPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGL 120
           RPDL+RGSFT +EE+ I+DVHRILGNRWAQIAKHLPGRTDNEVKN+WNSCIKKKL+++GL
Sbjct: 61  RPDLKRGSFTAQEERTIVDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIAQGL 120

Query: 121 DPKTH-ILMPSHQRAAASSKIACNIQLPIS----------SRAFTVSSSQIMSNIVSMEI 169
           DP TH +L P H +   ++  + +   P            +  FT+S+SQ     + ++ 
Sbjct: 121 DPNTHKLLSPKHNKQNRNNNHSNSNINPCKLIYDNAHQQPTSVFTISTSQFSDFSMDIQT 180

Query: 170 I--RPPVLTLPAPTDQFSLLQPTAIPMPPASEYQNPNFVWNAGDQNSQDYSTNFPNYVSS 227
           +    P  +LP P    S   P+ I     S  QNP  V    D  +Q Y          
Sbjct: 181 VSFNHPFPSLPPPDVTDSSCPPSYI-----SPNQNPK-VQALLDCTNQSY---------- 224

Query: 228 SVDHLRNGPMSSPPCS-SLMNPPGFGLTDENYCMWGTNTNIEVPSLEAKLQQQREKEKNI 286
                   PM S   S S   P GFG+ DEN C+W +         E  +Q  R +E  +
Sbjct: 225 --------PMGSVSTSCSTSYPSGFGIIDEN-CLWSS---------ELIIQPSRHEEMQV 266

Query: 287 CDRQAPQMEKIDD----EANMDCSFDS-SSFDHHLDFVDSTLMAGAMCRDFSSFSTDDFA 341
              Q  ++EK ++    + NMD S D  S+FD   +FV+STLM   M   +SS   D  A
Sbjct: 267 --EQVVEIEKTNEFSSGKNNMDASLDQYSNFD--FNFVESTLMPAGMY--YSSSPIDQLA 320

Query: 342 WN 343
           W+
Sbjct: 321 WD 322

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072395|ref|XP_002303715.1| predicted protein [Populus trichocarpa] gi|222841147|gb|EEE78694.1| predicted protein [Populus trichocarpa]

 Score =  277 bits (708), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 154/327 (47%), Positives = 209/327 (63%), Gaps = 22/327 (6%)

Query: 2   GHRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR 61
           GH+CCSK+KVK+GLWSP+EDEKL+K+IT HGHGSWSSVPKLAGLQRCGKSCRLRWINYLR
Sbjct: 16  GHQCCSKRKVKRGLWSPDEDEKLIKYITTHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR 75

Query: 62  PDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLD 121
           PDL+RGSFT +EE II+++HR+LGNRWAQIAKHLPGRTDNEVKN+WNSCIKKKL+++GLD
Sbjct: 76  PDLKRGSFTAQEESIIVEIHRMLGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLIAQGLD 135

Query: 122 PKTHILMPSHQRAAASSKIACNIQLPISSRAFTVSSSQIMSNIVSMEIIRPPVLTLPAPT 181
           PKTH L+ S+     ++  AC +       ++  S  Q  S       I    + + AP 
Sbjct: 136 PKTHNLL-SNNYKHNNNNNACEL------ISYQYSHQQTTSTFTVDSQINDTSMDMKAPL 188

Query: 182 DQFSLLQPTAIPMPPASEYQNPNFVWNAGDQNSQDYSTNFPNYVSSSVDHLRNGPMSSPP 241
             F    PT  P+P  + Y  P  +      ++ +Y    PN ++      ++   S P 
Sbjct: 189 IPF----PTIPPVPDTNPY--PPLLHKFSSISTCEYQN--PNTLAFLESGSKSSIGSVPV 240

Query: 242 CSSLMNPPGFGLTDENYCMWGTNTNIEVPSLEAKLQQQREKEKNICDRQAPQMEKIDDEA 301
            SS  +P  FG+ DE  CMW     + + S++++ +Q  ++ +   ++     E I    
Sbjct: 241 SSSTSHPSEFGMLDET-CMWAGGYEL-IQSIKSEKEQPEQQVELTIEKTN---ELIGAGQ 295

Query: 302 NMDCSFDSSSFDHHLDFVDSTLMAGAM 328
           NM  SF++S+FD   DF++STL+   M
Sbjct: 296 NMVASFETSTFD--FDFLESTLLPCGM 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	344
TAIR|locus:2087725	307	MYB67 "myb domain protein 67"	0.558	0.625	0.663	1.7e-68
TAIR|locus:2146804	352	MYB86 "myb domain protein 86"	0.363	0.355	0.761	7.8e-58
TAIR|locus:2012375	366	MYB61 "AT1G09540" [Arabidopsis	0.363	0.341	0.761	4.2e-57
TAIR|locus:2027508	314	MYB50 "myb domain protein 50"	0.357	0.391	0.764	2.6e-54
TAIR|locus:2088187	367	MYB26 "myb domain protein 26"	0.537	0.504	0.553	3.5e-52
TAIR|locus:2133382	348	MYB55 "myb domain protein 55"	0.372	0.367	0.666	7.4e-50
TAIR|locus:2195528	370	AtMYB103 "myb domain protein 1	0.447	0.416	0.586	8.5e-49
TAIR|locus:2075387	321	MYB107 "myb domain protein 107	0.485	0.520	0.519	6e-48
TAIR|locus:2133677	236	MYB6 "myb domain protein 6" [A	0.447	0.652	0.534	1.6e-47
TAIR|locus:2149000	336	MYB9 "myb domain protein 9" [A	0.485	0.497	0.502	8.8e-47

TAIR|locus:2087725 MYB67 "myb domain protein 67" [Arabidopsis thaliana (taxid:3702)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 132/199 (66%), Positives = 155/199 (77%)

Query:     1 MGHRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
             MGHRCC K KVK+GLWSPEEDEKLL++IT HGH SWSSVPKLAGLQRCGKSCRLRWINYL
Sbjct:    12 MGHRCCGKHKVKRGLWSPEEDEKLLRYITTHGHPSWSSVPKLAGLQRCGKSCRLRWINYL 71

Query:    61 RPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGL 120
             RPDLRRGSF EEEEQIIIDVHRILGN+WAQIAKHLPGRTDNEVKN+WNSCIKKKL+S+GL
Sbjct:    72 RPDLRRGSFNEEEEQIIIDVHRILGNKWAQIAKHLPGRTDNEVKNFWNSCIKKKLLSQGL 131

Query:   121 DPKTHILMPSHQRAAASSKIACNIQLPISSRAFTVSSSQIMSNIVSMEI--IRPPVLTLP 178
             DP TH LMPSH+R+++S+    NI  P  + +   + + +  +  +  I  I PP  T P
Sbjct:   132 DPSTHNLMPSHKRSSSSNNN--NIPKPNKTTSIMKNPTDLDQSTTAFSITNINPPTSTKP 189

Query:   179 ---APTDQFSLLQPTAIPM 194
                   +Q ++   T IP+
Sbjct:   190 NKLKSPNQTTIPSQTVIPI 208

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2146804 MYB86 "myb domain protein 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 7.8e-58, Sum P(2) = 7.8e-58
 Identities = 96/126 (76%), Positives = 112/126 (88%)

Query:     1 MG-HRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
             MG H CC KQK++KGLWSPEEDEKLL +IT HGHG WSSVPKLAGLQRCGKSCRLRWINY
Sbjct:     1 MGRHSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query:    60 LRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKG 119
             LRPDL+RG+F+++EE +II++H  LGNRW+QIA  LPGRTDNE+KN+WNSC+KKKL  KG
Sbjct:    61 LRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKG 120

Query:   120 LDPKTH 125
             +DP TH
Sbjct:   121 IDPTTH 126

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2012375 MYB61 "AT1G09540" [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
 Identities = 96/126 (76%), Positives = 110/126 (87%)

Query:     1 MG-HRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
             MG H CC KQK++KGLWSPEEDEKLL HIT HGHG WSSVPKLAGLQRCGKSCRLRWINY
Sbjct:     1 MGRHSCCYKQKLRKGLWSPEEDEKLLTHITNHGHGCWSSVPKLAGLQRCGKSCRLRWINY 60

Query:    60 LRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKG 119
             LRPDL+RG+F+ EEE +I+++H +LGNRW+QIA  LPGRTDNE+KN WNS IKKKL  +G
Sbjct:    61 LRPDLKRGAFSPEEENLIVELHAVLGNRWSQIASRLPGRTDNEIKNLWNSSIKKKLKQRG 120

Query:   120 LDPKTH 125
             +DP TH
Sbjct:   121 IDPNTH 126

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0010214 "seed coat development" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010089 "xylem development" evidence=IMP;RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0001944 "vasculature development" evidence=IMP

GO:0048364 "root development" evidence=IMP

TAIR|locus:2027508 MYB50 "myb domain protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 94/123 (76%), Positives = 110/123 (89%)

Query:     3 HRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRP 62
             H CC KQK++KGLWSPEEDEKLL +IT HGHG WSSVPKLAGL+RCGKSCRLRWINYLRP
Sbjct:     4 HSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLERCGKSCRLRWINYLRP 63

Query:    63 DLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDP 122
             DL+RG+F+ EE+ +I+++H +LGNRW+QIA  LPGRTDNE+KN WNSCIKKKLM KG+DP
Sbjct:    64 DLKRGAFSSEEQNLIVELHAVLGNRWSQIAARLPGRTDNEIKNLWNSCIKKKLMKKGIDP 123

Query:   123 KTH 125
              TH
Sbjct:   124 ITH 126

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2088187 MYB26 "myb domain protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 114/206 (55%), Positives = 139/206 (67%)

Query:     1 MGHR-CCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAG---------LQRCGK 50
             MGH  CC+KQKVK+GLWSPEEDEKL+ +I ++GHG WSSVPK AG         LQRCGK
Sbjct:     1 MGHHSCCNKQKVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGTYTHIHGFCLQRCGK 60

Query:    51 SCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSC 110
             SCRLRWINYLRPDL+RGSF+ +E  +II++H ILGNRWAQIAKHLPGRTDNEVKN+WNS 
Sbjct:    61 SCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSS 120

Query:   111 IKKKLMSKGLDPKTHILMPSHQRAAASSKIACNIQLPISSRAFTVS--SSQIMSNIVSM- 167
             IKKKLMS       H     H   ++ + +  N+         TV   SS+ MSNI++  
Sbjct:   121 IKKKLMSH------HHHGHHHHHLSSMASLLTNLPYHNGFNPTTVDDESSRFMSNIITNT 174

Query:   168 --EIIRPPVLTLPAPTDQFSLLQPTA 191
                 I P  L+LP+P     L+ PT+
Sbjct:   175 NPNFITPSHLSLPSPHVMTPLMFPTS 200

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009901 "anther dehiscence" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2133382 MYB55 "myb domain protein 55" [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 94/141 (66%), Positives = 114/141 (80%)

Query:     1 MG-HRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAG------------LQR 47
             MG H CC KQK++KGLWSPEEDEKLL++IT +GHG WSSVPK AG            LQR
Sbjct:     1 MGRHSCCYKQKLRKGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGTFLFIQIHLLFGLQR 60

Query:    48 CGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYW 107
             CGKSCRLRWINYLRPDL+RG+F+++EE +II++H +LGNRW+QIA  LPGRTDNE+KN W
Sbjct:    61 CGKSCRLRWINYLRPDLKRGAFSQDEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLW 120

Query:   108 NSCIKKKLMSKGLDPKTHILM 128
             NSC+KKKL  +G+DP TH L+
Sbjct:   121 NSCLKKKLRLRGIDPVTHKLL 141

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2195528 AtMYB103 "myb domain protein 103" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
 Identities = 95/162 (58%), Positives = 119/162 (73%)

Query:     1 MGHR-CCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
             MGH  CC++QKVK+GLWSPEEDEKL+++IT HG+G WS VP+ AGLQRCGKSCRLRWINY
Sbjct:     1 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINY 60

Query:    60 LRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKG 119
             LRPD+RRG F+ EEE++II +H ++GNRWA IA HLPGRTDNE+KNYWNS IKKK+    
Sbjct:    61 LRPDIRRGRFSPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIR--- 117

Query:   120 LDPKTHILMPSHQRAAASSKI-ACNIQLPISSRAFTVSSSQI 160
                K H     HQ +  +  + A    +  +  A T ++S I
Sbjct:   118 ---KPHHHYSRHQPSVTTVTLNADTTSIATTIEASTTTTSTI 156

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:1901430 "positive regulation of syringal lignin biosynthetic process" evidence=IMP

TAIR|locus:2075387 MYB107 "myb domain protein 107" [Arabidopsis thaliana (taxid:3702)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 92/177 (51%), Positives = 123/177 (69%)

Query:     1 MGHR-CCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
             MG   CC +  +KKG W+PEED+KL+ HI  HGHGSW ++PK AGL RCGKSCRLRW NY
Sbjct:     1 MGRSPCCDESGLKKGPWTPEEDQKLINHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNY 60

Query:    60 LRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKG 119
             LRPD++RG+FT EEEQ II++H +LGN+W+ IA HLPGRTDNE+KNYWN+ I+KKL+  G
Sbjct:    61 LRPDIKRGNFTAEEEQTIINLHSLLGNKWSSIAGHLPGRTDNEIKNYWNTHIRKKLIQMG 120

Query:   120 LDPKTHILMPSHQR---------AAASSKIACNIQLPISSRAFTVSSSQIMSNIVSM 167
             +DP TH     H           AAA+     N+   I   A +V+ +Q++ +++ +
Sbjct:   121 IDPVTHRPRTDHLNVLAALPQLLAAANFNNLLNLNQNIQLDATSVAKAQLLHSMIQV 177

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2133677 MYB6 "myb domain protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
 Identities = 86/161 (53%), Positives = 115/161 (71%)

Query:     1 MGHR-CCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
             MG   CC K    KG W+ EED++L+ +I  HG G W S+PK AGL RCGKSCRLRWINY
Sbjct:     1 MGRSPCCEKAHTNKGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINY 60

Query:    60 LRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKG 119
             LRPDL+RG+FT++E+QIII +H +LGN+W+ IA  LPGRTDNE+KNYWN+ IK+KL+S G
Sbjct:    61 LRPDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHG 120

Query:   120 LDPKTHILMPSHQRAAASSKIACNIQLPISSRAFTVSSSQI 160
             +DP+TH      ++   S  ++  + +PI + A   S S +
Sbjct:   121 IDPQTH------RQINESKTVSSQVVVPIQNDAVEYSFSNL 155

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2149000 MYB9 "myb domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 89/177 (50%), Positives = 122/177 (68%)

Query:     1 MGHR-CCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
             MG   CC +  +KKG W+ EED+KL+ HI  HGHGSW ++PK AGL RCGKSCRLRW NY
Sbjct:     1 MGRSPCCDENGLKKGPWTQEEDDKLIDHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNY 60

Query:    60 LRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKG 119
             LRPD++RG+FTEEEEQ II++H +LGN+W+ IA +LPGRTDNE+KNYWN+ ++KKL+  G
Sbjct:    61 LRPDIKRGNFTEEEEQTIINLHSLLGNKWSSIAGNLPGRTDNEIKNYWNTHLRKKLLQMG 120

Query:   120 LDPKTHILMPSHQR---------AAASSKIACNIQLPISSRAFTVSSSQIMSNIVSM 167
             +DP TH     H           AAA+     N+   +   A T++ +Q++  ++ +
Sbjct:   121 IDPVTHRPRTDHLNVLAALPQLIAAANFNSLLNLNQNVQLDATTLAKAQLLHTMIQV 177

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	344
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	1e-72
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	6e-51
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	3e-17
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-15
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-14
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-13
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-12
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	4e-12
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	9e-11
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	4e-10
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	4e-07
cd11659	53	cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d	0.004

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  231 bits (591), Expect = 1e-72
 Identities = 94/126 (74%), Positives = 112/126 (88%), Gaps = 1/126 (0%)

Query: 1   MG-HRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
           MG H CC KQK++KGLWSPEEDEKLL+HIT +GHG WSSVPK AGLQRCGKSCRLRWINY
Sbjct: 1   MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINY 60

Query: 60  LRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKG 119
           LRPDL+RG+F+++EE +II++H +LGNRW+QIA  LPGRTDNE+KN WNSC+KKKL  +G
Sbjct: 61  LRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRG 120

Query: 120 LDPKTH 125
           +DP TH
Sbjct: 121 IDPNTH 126

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  169 bits (429), Expect = 6e-51
 Identities = 71/121 (58%), Positives = 95/121 (78%)

Query: 5   CCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDL 64
           CC+K  +K+G W+ EEDE L+  I   G G W S+PK AGL RCGKSCRLRW+NYLRP +
Sbjct: 17  CCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSV 76

Query: 65  RRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKT 124
           +RG  T +EE +I+ +HR+LGNRW+ IA  +PGRTDNE+KNYWN+ ++KKL+ +G+DP+T
Sbjct: 77  KRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQT 136

Query: 125 H 125
           H
Sbjct: 137 H 137

Length = 249

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 82.1 bits (203), Expect = 3e-17
 Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 1/117 (0%)

Query: 8   KQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRG 67
           + K K G W   EDE L   +   G  +WS V  L      GK    RW N+L P L++ 
Sbjct: 15  QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKK 73

Query: 68  SFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKT 124
           +++EEE++ +ID+ + LG +W+ IA +   RT  +    + + ++    +     + 
Sbjct: 74  NWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQR 130

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 69.5 bits (171), Expect = 2e-15
 Identities = 24/45 (53%), Positives = 35/45 (77%), Gaps = 1/45 (2%)

Query: 66  RGSFTEEEEQIIIDVHRILGNR-WAQIAKHLPGRTDNEVKNYWNS 109
           RG +T EE++++I+  +  GN  W++IAKHLPGRTDN+ KN WN+
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNN 45

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 66.8 bits (164), Expect = 1e-14
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
          +G W+PEEDE L++ +  HG+G+WS + K     R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPG-RTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 19/49 (38%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 66  RGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIKK 113
           +G +TEEE++++I++ +  G N W +IAK LPGRT  + +  W + +K 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 60.7 bits (148), Expect = 2e-12
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 68  SFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWN 108
            +TEEE++++++  +  G N W +IAK LPGRT  + +  W 
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWR 42

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 60.0 bits (146), Expect = 4e-12
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 3/62 (4%)

Query: 16 WSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQ 75
          W+ EEDEKLLK +  +G   W  + +   L R   +CR RW   LRP   RG +T+EE+Q
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEE--LGRTPSACRDRWRRKLRPKRSRGPWTKEEDQ 57

Query: 76 II 77
           +
Sbjct: 58 RL 59

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 56.1 bits (136), Expect = 9e-11
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRP 62
          KG W+ EEDE L++ +  +G  +W  + K     R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 54.1 bits (131), Expect = 4e-10
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 16 WSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
          W+ EEDE LL+ +  +G  +W  + K     R  K CR RW N L
Sbjct: 2  WTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 69  FTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
           +TEEE++ ++ +    GN W QIA+ L GRT +  ++ W   ++ K 
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKR 46

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 62  PDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDN 101
           P +++  +T EE++ ++ + ++L  +W  IA  + GRT  
Sbjct: 1   PSIKKTEWTREEDEKLLHLAKLLPTQWRTIAP-IVGRTAQ 39

In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	344
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
PLN03091	459	hypothetical protein; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.77
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.72
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.64
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.55
PLN03212	249	Transcription repressor MYB5; Provisional	99.53
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.5
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.5
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.44
PLN03091	459	hypothetical protein; Provisional	99.43
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.36
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.36
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.33
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.12
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.02
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.98
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.87
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.81
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.22
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	98.01
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.84
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.66
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.37
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.37
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.31
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.03
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.92
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.91
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.8
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.68
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.68
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.36
PRK13923	170	putative spore coat protein regulator protein YlbO	96.16
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.14
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.02
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.84
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.49
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.27
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.02
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	94.47
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.21
PRK13923	170	putative spore coat protein regulator protein YlbO	93.8
KOG2656	445	consensus DNA methyltransferase 1-associated prote	91.73
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	91.43
KOG4282	345	consensus Transcription factor GT-2 and related pr	91.19
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	90.5
KOG1194	534	consensus Predicted DNA-binding protein, contains	89.65
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	87.69
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	83.59
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	80.75

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=2.9e-36  Score=281.15  Aligned_cols=125  Identities=57%  Similarity=1.171  Sum_probs=120.3

Q ss_pred             CCCccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHHHHHHHHh
Q 036087            4 RCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRI   83 (344)
Q Consensus         4 ~c~~Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~   83 (344)
                      +||+|++++|++||+|||++|+++|++||..+|..||+.++.+|+++|||+||.++|+|.+++++||+|||++|++++.+
T Consensus        16 pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~   95 (249)
T PLN03212         16 PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRL   95 (249)
T ss_pred             CCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHh
Confidence            79999999999999999999999999999989999999986689999999999999999999999999999999999999


Q ss_pred             cCCchHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccC
Q 036087           84 LGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILM  128 (344)
Q Consensus        84 ~G~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~~ll  128 (344)
                      ||++|..||+.|||||+++|||||+.++++++.+++..+.++..+
T Consensus        96 ~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~  140 (249)
T PLN03212         96 LGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPL  140 (249)
T ss_pred             ccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCC
Confidence            999999999999999999999999999999999998888876654

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=3.2e-36  Score=298.84  Aligned_cols=132  Identities=70%  Similarity=1.329  Sum_probs=126.0

Q ss_pred             CCC-CCCccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHHHHH
Q 036087            1 MGH-RCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIID   79 (344)
Q Consensus         1 mg~-~c~~Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~   79 (344)
                      ||| .||+|++++||+||+|||++|+++|++||.++|..||+.++++|+++|||+||.++|+|.+++++||+|||++|++
T Consensus         1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe   80 (459)
T PLN03091          1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE   80 (459)
T ss_pred             CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence            898 6999999999999999999999999999999999999998778999999999999999999999999999999999


Q ss_pred             HHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccCchhh
Q 036087           80 VHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQ  132 (344)
Q Consensus        80 lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~~ll~~~q  132 (344)
                      ++++||++|.+||+.|+|||+++||+||+.+++++++..+.++.++.++...+
T Consensus        81 L~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl~e~E  133 (459)
T PLN03091         81 LHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVE  133 (459)
T ss_pred             HHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCccccc
Confidence            99999999999999999999999999999999999999899888877776543

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=1.8e-33  Score=263.60  Aligned_cols=116  Identities=59%  Similarity=1.107  Sum_probs=109.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCCch
Q 036087            9 QKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRW   88 (344)
Q Consensus         9 p~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW   88 (344)
                      +.+.||+||+|||++|+++|++||.++|..||+.+|++|++++||.||.|||+|++++|.||+|||++|++++.++|++|
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW   84 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW   84 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence            33557999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCccc
Q 036087           89 AQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKT  124 (344)
Q Consensus        89 ~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e  124 (344)
                      +.||++|||||+++|||+|+..+++++.+.+.++..
T Consensus        85 s~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~  120 (238)
T KOG0048|consen   85 SLIAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPST  120 (238)
T ss_pred             HHHHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            999999999999999999999999999887744443

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.77  E-value=9e-20  Score=187.26  Aligned_cols=144  Identities=19%  Similarity=0.430  Sum_probs=130.7

Q ss_pred             CCCcc-----CCCCCCCCCHHHHHHHHHHHHHhCCC---CccccccccccccCcccccchhhcccCCCCCCCCCCHHHHH
Q 036087            4 RCCSK-----QKVKKGLWSPEEDEKLLKHITAHGHG---SWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQ   75 (344)
Q Consensus         4 ~c~~K-----p~~kkg~WT~EEDe~L~~lV~kyG~~---~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~   75 (344)
                      ||..|     +-+++..||.|||.+|+++|.....+   +|++|-..|+ ||+..|...||...|+|.+++|.||.+||.
T Consensus       291 QC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ymp-gr~~~qLI~R~~~~LdPsikhg~wt~~ED~  369 (939)
T KOG0049|consen  291 QCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMP-GRTRQQLITRFSHTLDPSVKHGRWTDQEDV  369 (939)
T ss_pred             HHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcC-CcchhhhhhhheeccCccccCCCCCCHHHH
Confidence            45555     44567889999999999999988543   7999999999 999999999999999999999999999999


Q ss_pred             HHHHHHHhcCC-chHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCccc-cccCchhhhhhcccccccccccCC
Q 036087           76 IIIDVHRILGN-RWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKT-HILMPSHQRAAASSKIACNIQLPI  148 (344)
Q Consensus        76 ~Ll~lv~~~G~-kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e-~~ll~~~q~~~~~~~~~~~~~~p~  148 (344)
                      +|+.+|.+||. .|.+|...+|||++.|||.||.+.|...++...|+-++ +.|+.....+..+.|..|+...|.
T Consensus       370 ~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~  444 (939)
T KOG0049|consen  370 LLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPK  444 (939)
T ss_pred             HHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccchHHHHHHHccc
Confidence            99999999995 59999999999999999999999999999999998665 677788888999999999988775

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.72  E-value=3.4e-18  Score=175.78  Aligned_cols=98  Identities=26%  Similarity=0.505  Sum_probs=92.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHHHHHHHHhcC-Cc
Q 036087            9 QKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILG-NR   87 (344)
Q Consensus         9 p~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G-~k   87 (344)
                      |.+++|.||++||.+|+.+|.+||.++|-+|-+.++ ||+..|||+||.|+|+...|++.||-.||+.|+.+|.+|| ++
T Consensus       356 Psikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g~  434 (939)
T KOG0049|consen  356 PSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKGN  434 (939)
T ss_pred             ccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccch
Confidence            899999999999999999999999999999999999 9999999999999999999999999999999999999999 78


Q ss_pred             hHHHhhhCCCCCHHHHHHHH
Q 036087           88 WAQIAKHLPGRTDNEVKNYW  107 (344)
Q Consensus        88 W~~IAk~lpgRT~~qcknRW  107 (344)
                      |.+||..||.||.+|.+.|=
T Consensus       435 WakcA~~Lp~~t~~q~~rrR  454 (939)
T KOG0049|consen  435 WAKCAMLLPKKTSRQLRRRR  454 (939)
T ss_pred             HHHHHHHccccchhHHHHHH
Confidence            99999999999996554443

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.64  E-value=1e-16  Score=119.25  Aligned_cols=60  Identities=43%  Similarity=0.870  Sum_probs=55.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHHH
Q 036087           16 WSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQII   77 (344)
Q Consensus        16 WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~L   77 (344)
                      ||+|||++|+++|.+||. +|..||+.|| .|++.||+.||.++|++.+++++||++||++|
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999997 9999999998 89999999999999999999999999999987

...

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.55  E-value=1.7e-15  Score=142.28  Aligned_cols=98  Identities=15%  Similarity=0.220  Sum_probs=86.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcC-CchHHHhhhCC-CCCHHHHHHHHHHHhhhhhhhCCCCccccccCchhhhhhcccc
Q 036087           62 PDLRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLP-GRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASSK  139 (344)
Q Consensus        62 p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lp-gRT~~qcknRW~~~lkkkl~~~~~~~~e~~ll~~~q~~~~~~~  139 (344)
                      +.+.+|+||.|||++|+++|++|| .+|..||+.++ +|++++||.||.++|++.++++.|+++|+.+|..++...+++|
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW   84 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW   84 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence            345579999999999999999999 56999999998 9999999999999999999999999999999999999999999


Q ss_pred             cccccccCC--CCCCcccCccc
Q 036087          140 IACNIQLPI--SSRAFTVSSSQ  159 (344)
Q Consensus       140 ~~~~~~~p~--S~~~~~~~~~~  159 (344)
                      +.++..+|.  .+....++++.
T Consensus        85 s~IA~~LPGRTDNeIKN~Wnt~  106 (238)
T KOG0048|consen   85 SLIAGRLPGRTDNEVKNHWNTH  106 (238)
T ss_pred             HHHHhhCCCcCHHHHHHHHHHH
Confidence            999988884  33344455444

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.53  E-value=4.1e-15  Score=139.55  Aligned_cols=87  Identities=18%  Similarity=0.345  Sum_probs=80.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcC-CchHHHhhhC-CCCCHHHHHHHHHHHhhhhhhhCCCCccccccCchhhhhhcccc
Q 036087           62 PDLRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHL-PGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASSK  139 (344)
Q Consensus        62 p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~l-pgRT~~qcknRW~~~lkkkl~~~~~~~~e~~ll~~~q~~~~~~~  139 (344)
                      +.+++++||+|||++|+++|++|| .+|..||+.+ ++||++|||.||.++|++.+.++.|+.+|+.+|..++...+++|
T Consensus        21 ~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnKW  100 (249)
T PLN03212         21 MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRW  100 (249)
T ss_pred             CCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccccH
Confidence            578899999999999999999999 5799999998 69999999999999999999999999999999999998889999


Q ss_pred             cccccccCC
Q 036087          140 IACNIQLPI  148 (344)
Q Consensus       140 ~~~~~~~p~  148 (344)
                      ..++..+|.
T Consensus       101 s~IAk~LpG  109 (249)
T PLN03212        101 SLIAGRIPG  109 (249)
T ss_pred             HHHHhhcCC
Confidence            888877654

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.50  E-value=1.5e-14  Score=148.22  Aligned_cols=108  Identities=31%  Similarity=0.543  Sum_probs=102.9

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCCc
Q 036087            8 KQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNR   87 (344)
Q Consensus         8 Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~k   87 (344)
                      +.+++.|.|+..||+.|..+|++||..+|..||..+. .|+++||+.||.++++|.++++.|+.+||+.|+.+..++|..
T Consensus        15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~   93 (512)
T COG5147          15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ   93 (512)
T ss_pred             cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence            4567899999999999999999999999999999998 699999999999999999999999999999999999999999


Q ss_pred             hHHHhhhCCCCCHHHHHHHHHHHhhhhhh
Q 036087           88 WAQIAKHLPGRTDNEVKNYWNSCIKKKLM  116 (344)
Q Consensus        88 W~~IAk~lpgRT~~qcknRW~~~lkkkl~  116 (344)
                      |..||..+++||..+|.+||...+.....
T Consensus        94 wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          94 WSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            99999999999999999999988877655

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=5.9e-15  Score=149.15  Aligned_cols=105  Identities=24%  Similarity=0.612  Sum_probs=99.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCCchHH
Q 036087           11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQ   90 (344)
Q Consensus        11 ~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~   90 (344)
                      ++.|.|+.-||+.|..+|.+||.+.|.+|++++. ..+++||+.||..+|+|.+++..|+.|||++|+.+.+.....|..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt   83 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT   83 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence            5789999999999999999999999999999998 899999999999999999999999999999999999999999999


Q ss_pred             HhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 036087           91 IAKHLPGRTDNEVKNYWNSCIKKKLMS  117 (344)
Q Consensus        91 IAk~lpgRT~~qcknRW~~~lkkkl~~  117 (344)
                      |+..+ ||+.+||-.||+.++......
T Consensus        84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~  109 (617)
T KOG0050|consen   84 IADIM-GRTSQQCLERYNNLLDVYVSY  109 (617)
T ss_pred             HHHHh-hhhHHHHHHHHHHHHHHHHhh
Confidence            99999 999999999999998776543

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.44  E-value=9e-14  Score=144.00  Aligned_cols=106  Identities=28%  Similarity=0.590  Sum_probs=95.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCC--CCCCCCCHHHHHHHHHHHH-------
Q 036087           12 KKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD--LRRGSFTEEEEQIIIDVHR-------   82 (344)
Q Consensus        12 kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~--lkkg~WT~EED~~Ll~lv~-------   82 (344)
                      ++|.||+||++.|..+|.++|. .|..|++.||  |.+..||+||++|..++  .+++.||.||+++|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            7999999999999999999998 9999999998  99999999999999987  4899999999999999995       


Q ss_pred             hc-------------------CCchHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCC
Q 036087           83 IL-------------------GNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGL  120 (344)
Q Consensus        83 ~~-------------------G~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~  120 (344)
                      ++                   +..|..|++.+.+|+..|||.+|+.++......+..
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~  516 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQ  516 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhccc
Confidence            23                   135999999999999999999999999887665543

>PLN03091 hypothetical protein; Provisional

Probab=99.43  E-value=6.1e-14  Score=140.48  Aligned_cols=87  Identities=17%  Similarity=0.334  Sum_probs=78.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcC-CchHHHhhhC-CCCCHHHHHHHHHHHhhhhhhhCCCCccccccCchhhhhhccc
Q 036087           61 RPDLRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHL-PGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASS  138 (344)
Q Consensus        61 ~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~l-pgRT~~qcknRW~~~lkkkl~~~~~~~~e~~ll~~~q~~~~~~  138 (344)
                      +.+++++.||+|||++|+++|.+|| .+|..||+.+ ++|+++|||.||.++|++.++++.|+++|+.+|..+++..+.+
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnK   88 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR   88 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcc
Confidence            3578899999999999999999999 5799999988 5999999999999999999999999999999998888888888


Q ss_pred             ccccccccC
Q 036087          139 KIACNIQLP  147 (344)
Q Consensus       139 ~~~~~~~~p  147 (344)
                      |..++..+|
T Consensus        89 WskIAk~LP   97 (459)
T PLN03091         89 WSQIAAQLP   97 (459)
T ss_pred             hHHHHHhcC
Confidence            877766554

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.36  E-value=1.2e-13  Score=98.91  Aligned_cols=48  Identities=40%  Similarity=0.737  Sum_probs=43.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhccc
Q 036087           13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL   60 (344)
Q Consensus        13 kg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L   60 (344)
                      |++||+|||++|+++|++||.++|..||..|+.+||+.||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999999669999999987999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.36  E-value=4.2e-13  Score=99.76  Aligned_cols=58  Identities=26%  Similarity=0.603  Sum_probs=51.0

Q ss_pred             CCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCccccc
Q 036087           69 FTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHI  126 (344)
Q Consensus        69 WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~~  126 (344)
                      ||+|||++|++++.+||++|..||+.|+.||..+|++||+..|++.+.+..|+.+++.
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~   58 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQ   58 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHh
Confidence            9999999999999999999999999996699999999999988888988899887754

...

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.33  E-value=1.9e-12  Score=92.75  Aligned_cols=46  Identities=33%  Similarity=0.766  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCc-hHHHhhhCC-CCCHHHHHHHHHHHh
Q 036087           66 RGSFTEEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNYWNSCI  111 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G~k-W~~IAk~lp-gRT~~qcknRW~~~l  111 (344)
                      |++||+|||++|++++.+||.. |..||..|+ +||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999999 999999999999864

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.12  E-value=1.2e-10  Score=80.77  Aligned_cols=47  Identities=43%  Similarity=0.941  Sum_probs=44.3

Q ss_pred             CCCCCHHHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHhh
Q 036087           66 RGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIK  112 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~lk  112 (344)
                      ++.||++||.+|+.++.+|| .+|..||..+++||..+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.02  E-value=1.1e-10  Score=80.97  Aligned_cols=48  Identities=38%  Similarity=0.774  Sum_probs=44.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccC
Q 036087           13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR   61 (344)
Q Consensus        13 kg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~   61 (344)
                      ++.||++||++|+.++..||..+|..||..++ +|++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            47899999999999999999559999999999 9999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.98  E-value=9.9e-10  Score=75.13  Aligned_cols=44  Identities=36%  Similarity=0.860  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHh
Q 036087           68 SFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCI  111 (344)
Q Consensus        68 ~WT~EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~l  111 (344)
                      +||.+|+.+|+.++.+|| .+|..||+.+++||..+|++||+.++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 89999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.87  E-value=7.3e-10  Score=75.78  Aligned_cols=45  Identities=40%  Similarity=0.756  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhccc
Q 036087           15 LWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL   60 (344)
Q Consensus        15 ~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L   60 (344)
                      .||++||++|+.++.+||..+|..||+.++ +|++.+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHhC
Confidence            599999999999999999669999999998 899999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.81  E-value=2.5e-09  Score=111.35  Aligned_cols=116  Identities=23%  Similarity=0.280  Sum_probs=94.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---------------CC--------ccccccccccccCcccccc---hhhcccCCCCC
Q 036087           12 KKGLWSPEEDEKLLKHITAHGH---------------GS--------WSSVPKLAGLQRCGKSCRL---RWINYLRPDLR   65 (344)
Q Consensus        12 kkg~WT~EEDe~L~~lV~kyG~---------------~~--------W~~IA~~~~~~Rt~~QCr~---Rw~n~L~p~lk   65 (344)
                      +-+.|+.+||+.|...|+.|-.               .+        |..|...++ -|+.+.+..   |-.+.+.+  +
T Consensus       307 ~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~--~  383 (607)
T KOG0051|consen  307 NLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFEN--K  383 (607)
T ss_pred             hhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCcccc--c
Confidence            3488999999999999998811               01        567777888 599988877   33334443  8


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhhh--hhhCCCCccccccCchh
Q 036087           66 RGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKK--LMSKGLDPKTHILMPSH  131 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkkk--l~~~~~~~~e~~ll~~~  131 (344)
                      +|.||+||++.|..++.++|+.|..|++.| ||.+..|+.||+.+.+..  ..++.|+.++...|..+
T Consensus       384 rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~  450 (607)
T KOG0051|consen  384 RGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKT  450 (607)
T ss_pred             cCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHH
Confidence            999999999999999999999999999999 999999999999998876  47788887776655443

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.22  E-value=6.4e-07  Score=92.64  Aligned_cols=109  Identities=20%  Similarity=0.253  Sum_probs=93.5

Q ss_pred             CCCCCCcc------CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHH
Q 036087            1 MGHRCCSK------QKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEE   74 (344)
Q Consensus         1 mg~~c~~K------p~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED   74 (344)
                      +|.+|..+      +.++++.|+.|||+.|+.+-..+|. .|..||..++ +|+..+|.+||.+.|.+..+ ..|+..++
T Consensus        54 ~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~-~wstia~~~d-~rt~~~~~ery~~~~~~~~s-~~~s~~~~  130 (512)
T COG5147          54 TGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT-QWSTIADYKD-RRTAQQCVERYVNTLEDLSS-THDSKLQR  130 (512)
T ss_pred             ccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCc-hhhhhccccC-ccchHHHHHHHHHHhhhhhc-cccccccc
Confidence            35667655      7899999999999999999999999 7999999999 99999999999999987666 78999999


Q ss_pred             HHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhh
Q 036087           75 QIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIK  112 (344)
Q Consensus        75 ~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lk  112 (344)
                      ...+.-+..|+..|.++....-.+-...+.+++.++..
T Consensus       131 ~~~f~k~d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~~  168 (512)
T COG5147         131 RNEFDKIDPFNENSARRPDIYEDELLEREVNREASYRL  168 (512)
T ss_pred             hhhccccCchhhhhhhhhhhhhcccchhhhhHHHHHHH
Confidence            98888888888888888877666777777887765543

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=98.01  E-value=2.9e-06  Score=86.95  Aligned_cols=83  Identities=13%  Similarity=0.277  Sum_probs=72.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccCchhhhhhccccccc
Q 036087           64 LRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASSKIAC  142 (344)
Q Consensus        64 lkkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~~ll~~~q~~~~~~~~~~  142 (344)
                      ++.|.|+.-||+.|-.+|.+|| +.|++|+..++-.|..||++||+..+.+.+++-.|+.+++.-+..+-+..-..|..+
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI   84 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI   84 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence            4678999999999999999999 679999999999999999999999999999999999888777766666666677665


Q ss_pred             cccc
Q 036087          143 NIQL  146 (344)
Q Consensus       143 ~~~~  146 (344)
                      +..+
T Consensus        85 a~i~   88 (617)
T KOG0050|consen   85 ADIM   88 (617)
T ss_pred             HHHh
Confidence            5543

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.84  E-value=9.4e-06  Score=60.85  Aligned_cols=49  Identities=12%  Similarity=0.354  Sum_probs=43.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCc---ccccccccccc-Ccccccchhhccc
Q 036087           12 KKGLWSPEEDEKLLKHITAHGHGSW---SSVPKLAGLQR-CGKSCRLRWINYL   60 (344)
Q Consensus        12 kkg~WT~EEDe~L~~lV~kyG~~~W---~~IA~~~~~~R-t~~QCr~Rw~n~L   60 (344)
                      ++-.||+||..+++++|+.+|.++|   ..|++.|+..| |..||+.|++.|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            3556999999999999999999999   99999887556 9999999988764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.66  E-value=1.7e-05  Score=80.15  Aligned_cols=50  Identities=18%  Similarity=0.538  Sum_probs=46.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccC
Q 036087           11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR   61 (344)
Q Consensus        11 ~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~   61 (344)
                      +-...||.+|+-+|++++..||.|||..||.++| .|+..+|+++|.+++-
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~fv  119 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHFV  119 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHHh
Confidence            4467899999999999999999999999999999 9999999999998753

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.37  E-value=0.00049  Score=51.59  Aligned_cols=48  Identities=19%  Similarity=0.288  Sum_probs=41.3

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCC-ch---HHHhhhCC-CC-CHHHHHHHHHHHhh
Q 036087           65 RRGSFTEEEEQIIIDVHRILGN-RW---AQIAKHLP-GR-TDNEVKNYWNSCIK  112 (344)
Q Consensus        65 kkg~WT~EED~~Ll~lv~~~G~-kW---~~IAk~lp-gR-T~~qcknRW~~~lk  112 (344)
                      .+-.||+||..++++++..+|. .|   ..|++.+. .| |..||+.+.+.+.-
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            3568999999999999999996 99   99999873 45 99999999887643

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.37  E-value=0.00022  Score=63.74  Aligned_cols=52  Identities=21%  Similarity=0.457  Sum_probs=45.6

Q ss_pred             CCCCCCHHHHHHHHHHHHhc---CC----chHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 036087           65 RRGSFTEEEEQIIIDVHRIL---GN----RWAQIAKHLPGRTDNEVKNYWNSCIKKKLMS  117 (344)
Q Consensus        65 kkg~WT~EED~~Ll~lv~~~---G~----kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~  117 (344)
                      +...||.|||.+|.+.|..|   |.    -...++..| +||+.+|.-||+.++|+++..
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~   61 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE   61 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence            45689999999999999887   43    389999999 999999999999999998654

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.31  E-value=0.00036  Score=70.68  Aligned_cols=49  Identities=24%  Similarity=0.495  Sum_probs=44.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHh
Q 036087           63 DLRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCI  111 (344)
Q Consensus        63 ~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~l  111 (344)
                      .+-...||.+|+-+|++++..|| ++|..||.++..||..+|+.+|.+++
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            45567899999999999999999 89999999999999999999997643

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.03  E-value=0.0013  Score=60.97  Aligned_cols=99  Identities=22%  Similarity=0.377  Sum_probs=71.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccc--cccCcccccchhhcccC-CCC--------------------CCCCCCH
Q 036087           15 LWSPEEDEKLLKHITAHGHGSWSSVPKLAG--LQRCGKSCRLRWINYLR-PDL--------------------RRGSFTE   71 (344)
Q Consensus        15 ~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~--~~Rt~~QCr~Rw~n~L~-p~l--------------------kkg~WT~   71 (344)
                      +|++++|-+|+.+|..-.  +-..|+.-+.  ..-|-+.+.+||+..|. |.+                    .+..||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            599999999999998765  4666665332  24556777889997652 221                    3678999


Q ss_pred             HHHHHHHHHHHhcCC---chHHHhh----hC-CCCCHHHHHHHHHHHhhhhh
Q 036087           72 EEEQIIIDVHRILGN---RWAQIAK----HL-PGRTDNEVKNYWNSCIKKKL  115 (344)
Q Consensus        72 EED~~Ll~lv~~~G~---kW~~IAk----~l-pgRT~~qcknRW~~~lkkkl  115 (344)
                      +|+++|.........   .+.+|=.    .| ++||++++.++|..+.+..+
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~L  130 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHL  130 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhch
Confidence            999999997765543   4666633    23 78999999999996655544

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.92  E-value=0.00031  Score=71.76  Aligned_cols=46  Identities=26%  Similarity=0.556  Sum_probs=43.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcc
Q 036087           12 KKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY   59 (344)
Q Consensus        12 kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~   59 (344)
                      ....||.+|..+|+++|+.||. +|.+||.++| +|+..||..||.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            5568999999999999999998 9999999999 99999999999864

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.91  E-value=0.00049  Score=71.59  Aligned_cols=46  Identities=24%  Similarity=0.581  Sum_probs=43.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcc
Q 036087           12 KKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY   59 (344)
Q Consensus        12 kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~   59 (344)
                      .++.||.+|+.+|+++|+.||. +|.+||.++| +|+..||..|+.+.
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC-CCCHHHHHHHHHhc
Confidence            4788999999999999999998 9999999999 99999999998763

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.80  E-value=0.0012  Score=52.13  Aligned_cols=49  Identities=31%  Similarity=0.618  Sum_probs=34.7

Q ss_pred             CCCCCHHHHHHHHHHHHh------cC--C------chHHHhhhC----CCCCHHHHHHHHHHHhhhh
Q 036087           66 RGSFTEEEEQIIIDVHRI------LG--N------RWAQIAKHL----PGRTDNEVKNYWNSCIKKK  114 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~------~G--~------kW~~IAk~l----pgRT~~qcknRW~~~lkkk  114 (344)
                      +..||.+|...||+++..      ++  .      -|..||..|    ..||..||++||.++.+.-
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y   67 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY   67 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            357999999999999877      21  1      399999987    4699999999999966553

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.68  E-value=0.0017  Score=66.40  Aligned_cols=45  Identities=13%  Similarity=0.386  Sum_probs=42.1

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHH
Q 036087           66 RGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSC  110 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~  110 (344)
                      ...||.+|..+|++.+..||..|.+||+++..||..||--||-++
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            448999999999999999999999999999999999999999654

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.68  E-value=0.0022  Score=66.82  Aligned_cols=46  Identities=17%  Similarity=0.458  Sum_probs=42.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHH
Q 036087           65 RRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSC  110 (344)
Q Consensus        65 kkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~  110 (344)
                      .+..||.+|..+|++++..||..|.+||.++.+||..||-.++..+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            4678999999999999999999999999999999999999998654

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.36  E-value=0.0058  Score=47.02  Aligned_cols=50  Identities=20%  Similarity=0.427  Sum_probs=32.7

Q ss_pred             CCCCCHHHHHHHHHHHHhcC--------Cc-hHHHhhhCC-CCCHHHHHHHHHHHhhhhh
Q 036087           66 RGSFTEEEEQIIIDVHRILG--------NR-WAQIAKHLP-GRTDNEVKNYWNSCIKKKL  115 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G--------~k-W~~IAk~lp-gRT~~qcknRW~~~lkkkl  115 (344)
                      +.+||.+||+.|++.|+++.        ++ |.++++.-+ .+|-...|+||...|+.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            46899999999999996542        22 999999877 8999999999988877654

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.16  E-value=0.0058  Score=55.37  Aligned_cols=52  Identities=21%  Similarity=0.389  Sum_probs=43.7

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCC-------chHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 036087           65 RRGSFTEEEEQIIIDVHRILGN-------RWAQIAKHLPGRTDNEVKNYWNSCIKKKLMS  117 (344)
Q Consensus        65 kkg~WT~EED~~Ll~lv~~~G~-------kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~  117 (344)
                      +...||.|+|.+|.+.|..|+.       -...++..| +||..+|..||+.+++++...
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Yee   62 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQE   62 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHHH
Confidence            4678999999999998888762       266777778 999999999999999987643

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.14  E-value=0.0012  Score=52.08  Aligned_cols=47  Identities=23%  Similarity=0.553  Sum_probs=32.5

Q ss_pred             CCCCCHHHHHHHHHHHHH--h----C--CC-----Ccccccccc---ccccCcccccchhhcc
Q 036087           13 KGLWSPEEDEKLLKHITA--H----G--HG-----SWSSVPKLA---GLQRCGKSCRLRWINY   59 (344)
Q Consensus        13 kg~WT~EEDe~L~~lV~k--y----G--~~-----~W~~IA~~~---~~~Rt~~QCr~Rw~n~   59 (344)
                      |..||.+|...|+.++..  +    +  ..     -|..||..|   |..|++.||+.||.+.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L   63 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL   63 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            357999999999999988  2    1  11     399999876   4679999999999874

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.02  E-value=0.0016  Score=50.05  Aligned_cols=52  Identities=21%  Similarity=0.382  Sum_probs=32.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC------CC--ccccccccccccCcccccchhhcccCCCC
Q 036087           13 KGLWSPEEDEKLLKHITAHGH------GS--WSSVPKLAGLQRCGKSCRLRWINYLRPDL   64 (344)
Q Consensus        13 kg~WT~EEDe~L~~lV~kyG~------~~--W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~l   64 (344)
                      |.+||.|||+.|++.|..+..      |+  |.++++.-++.+|-.+-|+||...|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            567999999999999976632      22  99998876657888999999999987653

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.84  E-value=0.003  Score=56.62  Aligned_cols=50  Identities=28%  Similarity=0.622  Sum_probs=42.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-C-----CccccccccccccCcccccchhhcccCC
Q 036087           11 VKKGLWSPEEDEKLLKHITAHGH-G-----SWSSVPKLAGLQRCGKSCRLRWINYLRP   62 (344)
Q Consensus        11 ~kkg~WT~EEDe~L~~lV~kyG~-~-----~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p   62 (344)
                      .+...||.|||.+|.+.|-+|-. |     ....|++.++  ||+..|.=||..+++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence            56778999999999999999932 1     3788888876  9999999999988763

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.49  E-value=0.004  Score=61.28  Aligned_cols=48  Identities=17%  Similarity=0.508  Sum_probs=44.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccC
Q 036087           13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR   61 (344)
Q Consensus        13 kg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~   61 (344)
                      --.|+..|+-+|+++....|-|||..||..+| .|+...|+++|..++.
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            44699999999999999999999999999999 9999999999998765

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.27  E-value=0.036  Score=42.92  Aligned_cols=48  Identities=29%  Similarity=0.578  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHHHHHHhcC----C-------------chHHHhhhC-----CCCCHHHHHHHHHHHhhh
Q 036087           66 RGSFTEEEEQIIIDVHRILG----N-------------RWAQIAKHL-----PGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G----~-------------kW~~IAk~l-----pgRT~~qcknRW~~~lkk  113 (344)
                      +..||.+|...|++++.+|.    +             .|..|+..|     +.||..+++.+|.++...
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~   71 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK   71 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            45799999999999998862    1             299999876     369999999999987654

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.02  E-value=0.032  Score=55.09  Aligned_cols=46  Identities=24%  Similarity=0.493  Sum_probs=41.8

Q ss_pred             CCCCCHHHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHh
Q 036087           66 RGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCI  111 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~l  111 (344)
                      -..|+..|+.+|++...-.| ++|..||.++..|+...||.+|....
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y  109 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMY  109 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            45699999999999999999 89999999998899999999997543

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=94.47  E-value=0.068  Score=60.40  Aligned_cols=100  Identities=14%  Similarity=0.292  Sum_probs=78.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccc-------hhhcc---------------------------
Q 036087           14 GLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRL-------RWINY---------------------------   59 (344)
Q Consensus        14 g~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~-------Rw~n~---------------------------   59 (344)
                      +.|+.-+=..++.+..+||..+-..||..|. +++...++.       ||..+                           
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~  903 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAI  903 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3599999999999999999989999999987 777776652       22210                           


Q ss_pred             ---------------c-CCCCCCCCCCHHHHHHHHHHHHhcC-CchHHHhhh------------CCCCCHHHHHHHHHHH
Q 036087           60 ---------------L-RPDLRRGSFTEEEEQIIIDVHRILG-NRWAQIAKH------------LPGRTDNEVKNYWNSC  110 (344)
Q Consensus        60 ---------------L-~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~------------lpgRT~~qcknRW~~~  110 (344)
                                     + .+.-++..+|.+||..|+-.+.+|| .+|..|-..            +..||+..+..|...+
T Consensus       904 ~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l  983 (1033)
T PLN03142        904 GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTL  983 (1033)
T ss_pred             HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHH
Confidence                           0 1223455699999999999999999 679998542            2579999999999998


Q ss_pred             hhhh
Q 036087          111 IKKK  114 (344)
Q Consensus       111 lkkk  114 (344)
                      ++--
T Consensus       984 ~~~~  987 (1033)
T PLN03142        984 IRLI  987 (1033)
T ss_pred             HHHH
Confidence            8764

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.21  E-value=0.023  Score=44.08  Aligned_cols=49  Identities=24%  Similarity=0.418  Sum_probs=39.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC----------------CCccccccccc----cccCcccccchhhccc
Q 036087           12 KKGLWSPEEDEKLLKHITAHGH----------------GSWSSVPKLAG----LQRCGKSCRLRWINYL   60 (344)
Q Consensus        12 kkg~WT~EEDe~L~~lV~kyG~----------------~~W~~IA~~~~----~~Rt~~QCr~Rw~n~L   60 (344)
                      ++..||.+|.+.|+++|++|..                .-|..|+..+.    ..|+..|++.+|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            3567999999999999999821                13999998762    2699999999998754

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=93.80  E-value=0.014  Score=52.83  Aligned_cols=50  Identities=24%  Similarity=0.505  Sum_probs=39.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCC------ccccccccccccCcccccchhhcccC
Q 036087           10 KVKKGLWSPEEDEKLLKHITAHGHGS------WSSVPKLAGLQRCGKSCRLRWINYLR   61 (344)
Q Consensus        10 ~~kkg~WT~EEDe~L~~lV~kyG~~~------W~~IA~~~~~~Rt~~QCr~Rw~n~L~   61 (344)
                      +.+...||.|||.+|-+.|-+|+...      ...++..+.  |++.+|..||..+++
T Consensus         2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vr   57 (170)
T PRK13923          2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVR   57 (170)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHH
Confidence            45778999999999999999996533      455555655  999999999976655

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=91.73  E-value=0.2  Score=50.79  Aligned_cols=86  Identities=22%  Similarity=0.358  Sum_probs=63.7

Q ss_pred             CccccccccccccCcccccchhhcccCCC-------------------------CCCCCCCHHHHHHHHHHHHhcCCchH
Q 036087           35 SWSSVPKLAGLQRCGKSCRLRWINYLRPD-------------------------LRRGSFTEEEEQIIIDVHRILGNRWA   89 (344)
Q Consensus        35 ~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~-------------------------lkkg~WT~EED~~Ll~lv~~~G~kW~   89 (344)
                      .|.-+.=..+ -|...--..||.+.-++.                         +....||.+|-+.|+++.+.|.-+|-
T Consensus        75 ~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~  153 (445)
T KOG2656|consen   75 PWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF  153 (445)
T ss_pred             CceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence            4665554333 566666677777663321                         22356999999999999999999999


Q ss_pred             HHhhh-----CCC-CCHHHHHHHHHHHhhhhhhhCCCC
Q 036087           90 QIAKH-----LPG-RTDNEVKNYWNSCIKKKLMSKGLD  121 (344)
Q Consensus        90 ~IAk~-----lpg-RT~~qcknRW~~~lkkkl~~~~~~  121 (344)
                      .||..     ++. ||-..+|.||+..-++-++...-.
T Consensus       154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s  191 (445)
T KOG2656|consen  154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAPS  191 (445)
T ss_pred             EEeeccchhhccccccHHHHHHHHHHHHHHHHHccCCC
Confidence            99976     555 999999999998888776654433

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=91.43  E-value=0.48  Score=37.65  Aligned_cols=46  Identities=30%  Similarity=0.557  Sum_probs=35.5

Q ss_pred             CCCHHHHHHHHHHHHhc---CC----------chHHHhhhC---C--CCCHHHHHHHHHHHhhh
Q 036087           68 SFTEEEEQIIIDVHRIL---GN----------RWAQIAKHL---P--GRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        68 ~WT~EED~~Ll~lv~~~---G~----------kW~~IAk~l---p--gRT~~qcknRW~~~lkk  113 (344)
                      .||+++++.|++++.+.   |+          .|..|+..|   .  ..+..||++||..+.+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            59999999999987542   21          299999877   2  35789999999876655

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=91.19  E-value=0.39  Score=47.42  Aligned_cols=50  Identities=22%  Similarity=0.389  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHhc----------CCchHHHhhhC----CCCCHHHHHHHHHHHhhhhh
Q 036087           66 RGSFTEEEEQIIIDVHRIL----------GNRWAQIAKHL----PGRTDNEVKNYWNSCIKKKL  115 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~----------G~kW~~IAk~l----pgRT~~qcknRW~~~lkkkl  115 (344)
                      ...|+.+|-..||++..+.          +..|..||+.+    .-||+.+||++|.++.++.-
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk  117 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYK  117 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            3689999999999987653          23499999965    45999999999999776643

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=90.50  E-value=0.47  Score=40.63  Aligned_cols=51  Identities=24%  Similarity=0.479  Sum_probs=40.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCC----chHHHhhhC------------CCCCHHHHHHHHHHHhhh
Q 036087           63 DLRRGSFTEEEEQIIIDVHRILGN----RWAQIAKHL------------PGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        63 ~lkkg~WT~EED~~Ll~lv~~~G~----kW~~IAk~l------------pgRT~~qcknRW~~~lkk  113 (344)
                      .-++..||++||.-|+-.+.+||-    .|..|...+            ..||+..+..|...+++-
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~  112 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL  112 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence            456779999999999999999995    698887532            469999999999998875

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=89.65  E-value=0.93  Score=46.92  Aligned_cols=49  Identities=20%  Similarity=0.358  Sum_probs=44.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087           65 RRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        65 kkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkk  113 (344)
                      -...||.||--++-.+...||.++.+|.+.||.|+-..+...|+...+.
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~  234 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKT  234 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHH
Confidence            3558999999999999999999999999999999999999998876554

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=87.69  E-value=0.86  Score=46.24  Aligned_cols=47  Identities=17%  Similarity=0.258  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087           67 GSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        67 g~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkk  113 (344)
                      .+|+.+|-++...+..++|..+..|+..+|.|..+|||.+|.+--++
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            47999999999999999999999999999999999999999754433

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=83.59  E-value=3.2  Score=29.49  Aligned_cols=42  Identities=29%  Similarity=0.359  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087           71 EEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        71 ~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkk  113 (344)
                      ++++..++.++...|-.|.+||..+ |.+...|+.+....+++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~   53 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK   53 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence            4677888888888999999999999 99999999988776553

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=80.75  E-value=1  Score=45.75  Aligned_cols=67  Identities=25%  Similarity=0.364  Sum_probs=52.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhccc--CCC-----C-CCCCCCHHHHHHHH
Q 036087           10 KVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL--RPD-----L-RRGSFTEEEEQIII   78 (344)
Q Consensus        10 ~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L--~p~-----l-kkg~WT~EED~~Ll   78 (344)
                      +..--+||.+|-++..++...+|. +...|+.+++ .|..+|++.+|.+--  +|.     + .+.++..+|--+|.
T Consensus       362 ~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP-~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY~k~~  436 (507)
T COG5118         362 KKGALRWSKKEIEKFYKALSIWGT-DFSLISSLFP-NRERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEYNKLR  436 (507)
T ss_pred             CCCCCcccHHHHHHHHHHHHHhcc-hHHHHHHhcC-chhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHHhhHH
Confidence            445568999999999999999999 9999999999 999999999988642  221     1 24466666665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	344
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		4e-27
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		2e-26
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		3e-25
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		3e-25
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		4e-25
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		2e-15
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		8e-13
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		1e-12
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		2e-12
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		2e-09
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		2e-05
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		3e-05
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		9e-05

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  118 bits (296), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/104 (52%), Positives = 79/104 (75%), Gaps = 3/104 (2%)
Query: 13  KGLWSPEEDEKLLKHITAHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPDLRRGSFTE 71
           KG W+ EED+K+++ +  +G   W+ + K L G  R GK CR RW N+L P++++ S+TE
Sbjct: 7   KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG--RLGKQCRERWHNHLNPEVKKSSWTE 64
Query: 72  EEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
           EE++II + H++LGNRWA+IAK LPGRTDN VKN+WNS IK+K+
Sbjct: 65  EEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/104 (51%), Positives = 78/104 (75%), Gaps = 3/104 (2%)
Query: 13  KGLWSPEEDEKLLKHITAHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPDLRRGSFTE 71
           KG W+ EED+++++H+  +G   WS + K L G  R GK CR RW N+L P++++ S+TE
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 84
Query: 72  EEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
           EE++II   H+ LGNRWA+IAK LPGRTDN VKN+WNS +++K+
Sbjct: 85  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  112 bits (280), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/104 (50%), Positives = 77/104 (74%), Gaps = 3/104 (2%)
Query: 13  KGLWSPEEDEKLLKHITAHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPDLRRGSFTE 71
           KG W+ EED++++K +  +G   WS + K L G  R GK CR RW N+L P++++ S+TE
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 72  EEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
           EE++II   H+ LGNRWA+IAK LPGRTDN +KN+WNS +++K+
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  112 bits (280), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/104 (50%), Positives = 77/104 (74%), Gaps = 3/104 (2%)
Query: 13  KGLWSPEEDEKLLKHITAHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPDLRRGSFTE 71
           KG W+ EED++++K +  +G   WS + K L G  R GK CR RW N+L P++++ S+TE
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 72  EEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
           EE++II   H+ LGNRWA+IAK LPGRTDN +KN+WNS +++K+
Sbjct: 62  EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/104 (50%), Positives = 77/104 (74%), Gaps = 3/104 (2%)
Query: 13  KGLWSPEEDEKLLKHITAHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPDLRRGSFTE 71
           KG W+ EED++++K +  +G   WS + K L G  R GK CR RW N+L P++++ S+TE
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 115
Query: 72  EEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
           EE++II   H+ LGNRWA+IAK LPGRTDN +KN+WNS +++K+
Sbjct: 116 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 9/128 (7%)
Query: 13  KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGL--QRCGKSCRLRWINYLRPDLRRGSFT 70
           KG ++  ED+ + +++  +G  +W   P++      R  K CR RW N+L P + + ++T
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNW---PRITSFLPNRSPKQCRERWFNHLDPAVVKHAWT 58
Query: 71  EEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMP- 129
            EE++ I   +  LG++W+ IAK +PGRTDN +KN WNS I K++ +        IL+P 
Sbjct: 59  PEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNS--NHKEILLPD 116
Query: 130 -SHQRAAA 136
            S +R AA
Sbjct: 117 RSKKRKAA 124

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 44/52 (84%)
Query: 64  LRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
           +++ S+TEEE++II   H+ LGNRWA+IAK LPGRTDN +KN+WNS +++K+
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/53 (54%), Positives = 45/53 (84%)
Query: 63  DLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
           ++++ S+TEEE++I+   H+ LGNRWA+IAK LPGRTDN +KN+WNS +++K+
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 12  KKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTE 71
           KK  ++PEEDE L + +  HG   W  +       R  + CR RW NYL P +    +T 
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 72  EEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYW 107
           EE+ +++   +  G +WA IAK  PGRTD  +KN W
Sbjct: 68  EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 17  SPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQI 76
           + EED KL + +  +G   W  + +L  + R  + CR RW NY+ P LR   ++ EE+ +
Sbjct: 5   TEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 77  IIDVHRILGNRWAQIAKHLPGRTDNEVKNYW 107
           +   +   G +W +I+K L  R+DN ++N W
Sbjct: 64  LDQKYAEYGPKWNKISKFLKNRSDNNIRNRW 94

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPD 63
          KG W+ EED++L+K +  +G   WS + K L G  R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPD 63
          KG W+ EED++++K +  +G   WS + K L G  R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPK-LAGLQRCGKSCRLRWINYLRPD 63
          KG W+ EED+++++ +  +G   WS + K L G  R GK CR RW N+L P+
Sbjct: 3  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPE 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	344
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	2e-70
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	1e-68
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	1e-68
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	9e-62
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	4e-59
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-33
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	5e-55
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	2e-26
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	7e-24
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	6e-07
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	4e-20
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	2e-07
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	2e-15
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-10
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-07
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	3e-10
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	9e-05
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	4e-07
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	6e-04
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	4e-07
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	5e-07
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	8e-05
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	2e-06
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	2e-05
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	3e-06
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	3e-06
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	3e-06
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	3e-06
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	5e-04
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	3e-06
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	2e-04
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	5e-06
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	1e-05
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	1e-05
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	3e-05
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	1e-04
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	1e-04
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	5e-04

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  213 bits (545), Expect = 2e-70
 Identities = 51/106 (48%), Positives = 77/106 (72%), Gaps = 1/106 (0%)

Query: 10  KVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSF 69
           ++ KG W+ EED++++K +  +G   WS + K     R GK CR RW N+L P++++ S+
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 59

Query: 70  TEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
           TEEE++II   H+ LGNRWA+IAK LPGRTDN +KN+WNS +++K+
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  210 bits (536), Expect = 1e-68
 Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 1/125 (0%)

Query: 13  KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEE 72
           KG ++  ED+ + +++  +G  +W  +       R  K CR RW N+L P + + ++T E
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 73  EEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQ 132
           E++ I   +  LG++W+ IAK +PGRTDN +KN WNS I K++ +     +  +   S +
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKK 120

Query: 133 RAAAS 137
           R AA 
Sbjct: 121 RKAAD 125

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  209 bits (535), Expect = 1e-68
 Identities = 52/108 (48%), Positives = 78/108 (72%), Gaps = 1/108 (0%)

Query: 8   KQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRG 67
             ++ KG W+ EED+++++H+  +G   WS + K     R GK CR RW N+L P++++ 
Sbjct: 22  NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKT 80

Query: 68  SFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
           S+TEEE++II   H+ LGNRWA+IAK LPGRTDN VKN+WNS +++K+
Sbjct: 81  SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  192 bits (490), Expect = 9e-62
 Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 7   SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRR 66
           + +  KK  ++PEEDE L + +  HG   W  +       R  + CR RW NYL P +  
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAPSISH 62

Query: 67  GSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTH 125
             +T EE+ +++   +  G +WA IAK  PGRTD  +KN W +   K  + +      H
Sbjct: 63  TPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEH 121

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  186 bits (475), Expect = 4e-59
 Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 11/125 (8%)

Query: 1   MGHRCCS----------KQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGK 50
           + +R               ++ KG W+ EED++++K +  +G   WS + K     R GK
Sbjct: 36  LPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGK 94

Query: 51  SCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSC 110
            CR RW N+L P++++ S+TEEE++II   H+ LGNRWA+IAK LPGRTDN +KN+WNS 
Sbjct: 95  QCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154

Query: 111 IKKKL 115
           +++K+
Sbjct: 155 MRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  120 bits (303), Expect = 2e-33
 Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 6/108 (5%)

Query: 11  VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFT 70
           + K  W+ EEDEKL K +  +G   W  +       R    C+ RW   L P+L +G +T
Sbjct: 4   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWT 62

Query: 71  EEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEV----KNYWNSCIKK 113
           +EE+Q +I + +  G  RW+ IAKHL GR   +      N+ N  +KK
Sbjct: 63  KEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 110

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  174 bits (443), Expect = 5e-55
 Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 1/103 (0%)

Query: 13  KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEE 72
           K  ++ EED KL + +  +G   W  + +L    R  + CR RW NY+ P LR   ++ E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPE 59

Query: 73  EEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
           E+ ++   +   G +W +I+K L  R+DN ++N W    + + 
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRA 102

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 98.4 bits (246), Expect = 2e-26
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63
          + KG W+ EED++L+K +  +G   WS + K     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 92.0 bits (229), Expect = 7e-24
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 7  SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRR 66
          S    K G+W   EDE L   +  +G   WS +  L   ++  K C+ RW  +L P +++
Sbjct: 3  SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKK 61

Query: 67 GSFTEEEE 74
            ++    
Sbjct: 62 TEWSGPSS 69

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 61  RPDLRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVK----NYWNSCIKKK 114
               + G +   E++I+       G N+W++IA  L  ++  + K     + +  IKK 
Sbjct: 4   GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKT 62

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 81.5 bits (202), Expect = 4e-20
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63
          + K  W+ EEDEKL K +  +G   W  +       R    C+ RW   L P+
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 46.0 bits (110), Expect = 2e-07
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 64  LRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWN 108
           L +  +T EE++ +  +    G + W  IA +LP RTD + ++ W 
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQ 46

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 69.2 bits (170), Expect = 2e-15
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 7  SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSV-PKLAGLQRCGKSCRLRWINYLRP 62
          S     K  W+ EEDE+L   +   G   W  +        R  + C+ RW+  L  
Sbjct: 2  SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN--RTDQQCQYRWLRVLSG 56

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 42.2 bits (100), Expect = 6e-06
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 61  RPDLRRGSFTEEEEQIIIDVHRILGNR-WAQIAKHLPGRTD 100
                +  +T EE++ +  + R  G + W  +A H P RTD
Sbjct: 3   SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTD 43

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 2e-11
 Identities = 61/431 (14%), Positives = 111/431 (25%), Gaps = 149/431 (34%)

Query: 9   QKVKKG-LWSPEEDEKL------LKH---ITAHGHGSWSSVPKLAGLQRCGKSC------ 52
           Q   K  +   +   KL      L+    +   G         + G    GK+       
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG---------VLG---SGKTWVALDVC 171

Query: 53  -----------RLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTD- 100
                      ++ W+N         +    E  +      +L     QI  +   R+D 
Sbjct: 172 LSYKVQCKMDFKIFWLNL-------KNCNSPETVLE-----MLQKLLYQIDPNWTSRSDH 219

Query: 101 --------NEVKNYWNSCIKKKLMSKGL-------DPKT--------HILMPSHQRAAA- 136
                   + ++      +K K     L       + K          IL+ +  +    
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 137 --SSKIACNIQLPISSRAFTVSSS-QIMSNIVSMEIIRPPVLTLPAPTDQFSLLQPTAIP 193
             S+    +I L   S   T      ++   +           LP    +     P  + 
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-----RPQDLPR---EVLTTNPRRLS 331

Query: 194 MPPASEYQNPNFVWNAGDQNSQDYSTN-FPNYVSSSVDHLRNGPMSSPP--------CSS 244
           +   S        W     N +  + +     + SS++ L       P          S 
Sbjct: 332 IIAESIRDGLA-TW----DNWKHVNCDKLTTIIESSLNVL------EPAEYRKMFDRLSV 380

Query: 245 LMNPPGFGLTDENYCM-WGTNTNIEVPSLEAKLQQQREKEKN-------ICDRQAPQMEK 296
              PP   +      + W      +V  +  KL +    EK        I         K
Sbjct: 381 F--PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

Query: 297 IDDEA----------NMDCSFDSSSF-----D--------HHLDFVDSTLMAGAMCRDFS 333
           +++E           N+  +FDS        D        HHL  ++            +
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE-------HPERMT 491

Query: 334 SFSTD--DFAW 342
            F     DF +
Sbjct: 492 LFRMVFLDFRF 502

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 5e-05
 Identities = 52/361 (14%), Positives = 95/361 (26%), Gaps = 124/361 (34%)

Query: 10  KVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLA------GLQRCGKSCR---LRWINY- 59
                L +P+E + LL             +P+         L    +S R     W N+ 
Sbjct: 293 HHSMTL-TPDEVKSLLLKYL---DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 60  -----------------LRPDLRRGSFTE-----EEEQIIIDVHRILGNRWAQIAKHLPG 97
                            L P   R  F           I   +  ++   W  +      
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI---WFDV------ 399

Query: 98  RTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASSKIACNIQLPISSRAFTVSS 157
              ++V    N   K  L+ K     T  +            I   +++ + +       
Sbjct: 400 -IKSDVMVVVNKLHKYSLVEKQPKESTISI---PS-------IYLELKVKLENEY----- 443

Query: 158 SQIMSNIVSMEIIRPPVLTLPAPTDQFSLLQPTAIPMPPASEYQNPNFVWNAGDQNSQDY 217
             +  +IV                D +++ +           + + + +    DQ    Y
Sbjct: 444 -ALHRSIV----------------DHYNIPK----------TFDSDDLIPPYLDQ----Y 472

Query: 218 STNFPNYVSSSVDHLRNGPMSSPPCSSLMNPPGFGLTDENY-----CMWGTNTNIEVPSL 272
             +   +      HL+N           +    F   D  +         T  N    S+
Sbjct: 473 FYSHIGH------HLKNIEHPE---RMTLFRMVF--LDFRFLEQKIRHDSTAWN-ASGSI 520

Query: 273 EAKLQQQREKEKNICDRQAPQMEKIDD--------EANMDCSFDSSSFDHHLDFVDSTLM 324
              LQQ +  +  ICD        ++         E N+ CS        + D +   LM
Sbjct: 521 LNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS-------KYTDLLRIALM 573

Query: 325 A 325
           A
Sbjct: 574 A 574

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 55.2 bits (133), Expect = 2e-10
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 7  SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRR 66
          S    KK  WS EE+EKLL          W ++  + G  R    C   +   L    +R
Sbjct: 3  SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAPIIG--RTAAQCLEHYEFLLDKAAQR 59

Query: 67 GS 68
           S
Sbjct: 60 DS 61

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 45.6 bits (108), Expect = 4e-07
 Identities = 10/53 (18%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 64  LRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLM 116
            ++  ++ EEE+ ++ + +++  +W  IA  + GRT  +   ++   + K   
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQ 58

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 54.2 bits (131), Expect = 3e-10
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 12 KKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQ-RCGKSCRLRWINYLR 61
          K+  W  EED+ L   +  +G G+WS +        R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 38.8 bits (91), Expect = 9e-05
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 65  RRGSFTEEEEQIIID-VHRILGNRWAQIAKHLP--GRTDNEVKNYWNSCIKKK 114
           +R ++  EE++ +   V +     W++I  H     RT   +K+ W +  K K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 7  SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQ-RCGKSCRLRWINYLRPDL 64
          +    KK  W+ EE E +   +  +G G+W+++ K      R     + RW    R  +
Sbjct: 5  TTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 65  RRGSFTEEEEQIIID-VHRILGNRWAQIAKHLP--GRTDNEVKNYWNSCIKKKL 115
           ++  +T EE + +   V +     WA I+K+ P   RT   +K+ W +  +  +
Sbjct: 10  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 46.5 bits (110), Expect = 4e-07
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 53  RLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIK 112
                +  R +L    +TEEE           G  W+ IA+ +  +T ++ KN++ +  K
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKK 62

Query: 113 K 113
           +
Sbjct: 63  R 63

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 45.0 bits (107), Expect = 5e-07
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 12 KKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQ-RCGKSCRLRWINYLRPDL 64
          KK  W+ EE E +   +  +G G+W+++ K      R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 38.8 bits (91), Expect = 8e-05
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 65  RRGSFTEEEEQIIID-VHRILGNRWAQIAKHLP--GRTDNEVKNYWNSCIKKKL 115
           ++  +T EE + +   V +     WA I+K+ P   RT   +K+ W +  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 7  SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60
          S        W+ +E+  LL+ +   G G+W  V       +  + C   ++ Y 
Sbjct: 2  SSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF 54

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 65  RRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSC 110
              S+T +EE  +++     G   W  +A  +  +T  E + ++   
Sbjct: 7   GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY 53

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 9/96 (9%)

Query: 7   SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQ---RCGKSCRLRWINYLR-- 61
             Q+  +  +S  E E L++ +   G G W  V   A      R     + +W   +   
Sbjct: 7   DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66

Query: 62  ---PDLRRGSFTEEEEQI-IIDVHRILGNRWAQIAK 93
              P  RRG    +E    +++ H     +  Q  +
Sbjct: 67  KISPQQRRGEPVPQELLNRVLNAHGYWTQQQMQQLQ 102

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 46.9 bits (110), Expect = 3e-06
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 62  PDLRRGSFTEEEEQIIIDVHRILGNR------WAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
           P   + SFT+EE++ I+DV R    R      + +I+ ++P  T N +++ +   + K+L
Sbjct: 4   PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 46.9 bits (110), Expect = 3e-06
 Identities = 27/184 (14%), Positives = 52/184 (28%), Gaps = 15/184 (8%)

Query: 12  KKGLWSPEEDEKLLKHITAH-----GHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRR 66
            K  ++ EEDE +L  +  +      H  +  +         G S R R+  YL   L  
Sbjct: 7   NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEY 65

Query: 67  GSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHI 126
               ++  +++ D     GN                +K  +++     L           
Sbjct: 66  VYEVDKFGKLVRDDD---GNLIKT------KVLPPSIKRKFSADEDYTLAIAVKKQFYRD 116

Query: 127 LMPSHQRAAASSKIACNIQLPISSRAFTVSSSQIMSNIVSMEIIRPPVLTLPAPTDQFSL 186
           L         S     +    I+ R  T+  + +  +  +    R      P   + F  
Sbjct: 117 LFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREFFKH 176

Query: 187 LQPT 190
               
Sbjct: 177 FAEE 180

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 12 KKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRG 67
            G ++PEE EKL +    HG   W+++    G  R   S + R    ++     G
Sbjct: 22 HVGKYTPEEIEKLKELRIKHG-NDWATIGAALG--RSASSVKDRC-RLMKDTCNTG 73

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 66  RGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYW 107
            G +T EE + + ++    GN WA I   L GR+ + VK+  
Sbjct: 23  VGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRC 63

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 8  KQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQ-RCGKSCRLRWINYLRPDL 64
           +  K+  W  EED+ L   +  +G G+WS +        R     + RW    +  L
Sbjct: 5  HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 65  RRGSFTEEEEQIIID-VHRILGNRWAQIAKHLP--GRTDNEVKNYWNSCIKKKLMSK 118
           +R ++  EE++ +   V +     W++I  H     RT   +K+ W +  K KL+S 
Sbjct: 9   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 43.0 bits (101), Expect = 5e-06
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 11/83 (13%)

Query: 16 WSPEEDEKLLKHITAHGHGSWSSVPKLA---GLQRCGKSCRLRWINYLR-----PDLRRG 67
          +S  E E L++ +   G G W  V   A      R     + +W   +      P  RRG
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 68 SFTEEEEQIIIDVHRILGNRWAQ 90
              ++   ++D        W+Q
Sbjct: 63 EPVPQD---LLDRVLAAHAYWSQ 82

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 10/44 (22%), Positives = 19/44 (43%)

Query: 16 WSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
          W  +E+  L+      G G+W+ +    G  R  + CR  ++  
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 9/97 (9%)

Query: 2   GHRCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLA---GLQRCGKSCRLRWIN 58
             R    Q+  +  ++  E E L++ +   G G W  V   A      R     + +W  
Sbjct: 20  SKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKT 79

Query: 59  YLR-----PDLRRGSFTEEEEQI-IIDVHRILGNRWA 89
            +      P  RRG+   +E    ++          +
Sbjct: 80  LVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSVDSS 116

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 42.1 bits (98), Expect = 3e-05
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 7   SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQ---RCGKSCRLRWINYLR-- 61
             Q+  +  +S  E E L++ +   G G W  V   A      R     + +W   +   
Sbjct: 11  LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70

Query: 62  ---PDLRRGSFTEEEEQI-IIDVHRILGNRWA 89
              P  RRG    ++    ++  H     +  
Sbjct: 71  SIAPQQRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 61  RPDLRRGSFTEEE----EQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLM 116
           R       +T+ +    E  +    R   + W +IA+ +P ++  +    +   +     
Sbjct: 13  RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLV--SGP 70

Query: 117 SKG 119
           S G
Sbjct: 71  SSG 73

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 15/54 (27%), Positives = 24/54 (44%)

Query: 61  RPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKK 114
                   +T EE+++        G RW +I+K +  RT  +VK+Y     K K
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNK 57

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 8/41 (19%), Positives = 23/41 (56%)

Query: 70  TEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSC 110
           TE+E  ++++   +  + W ++++H+  RT +E   ++   
Sbjct: 22  TEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	344
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.98
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.98
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.98
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.89
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.83
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.72
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.68
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.68
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.67
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.67
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.66
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.66
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.65
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.65
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.64
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.64
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.61
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.61
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.61
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.58
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.57
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.57
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.57
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.56
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.55
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.54
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.52
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.52
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.52
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.52
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.51
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.5
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.5
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.49
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.46
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.46
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.11
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.4
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.36
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.35
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.34
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.34
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.31
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.27
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.26
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.92
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.25
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.23
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.2
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.19
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.16
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.14
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.9
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.89
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.86
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.83
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.79
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.72
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.6
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.46
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.45
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.43
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.32
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.29
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.25
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.24
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.04
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.02
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.9
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.88
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.8
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.74
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.9
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.65
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.48
2crg_A	70	Metastasis associated protein MTA3; transcription	97.48
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.38
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.34
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.02
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.98
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.88
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.84
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.79
2crg_A	70	Metastasis associated protein MTA3; transcription	96.74
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.28
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.08
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	94.47
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	92.72
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	91.38
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	90.8
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	90.52
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	90.19

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=3.1e-33  Score=229.22  Aligned_cols=105  Identities=49%  Similarity=0.922  Sum_probs=99.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCCchH
Q 036087           10 KVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWA   89 (344)
Q Consensus        10 ~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~   89 (344)
                      .+++|+||+|||++|+++|++||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|++++.+||++|.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            36899999999999999999999989999999998 99999999999999999999999999999999999999999999


Q ss_pred             HHhhhCCCCCHHHHHHHHHHHhhhhh
Q 036087           90 QIAKHLPGRTDNEVKNYWNSCIKKKL  115 (344)
Q Consensus        90 ~IAk~lpgRT~~qcknRW~~~lkkkl  115 (344)
                      .||+.|||||+++|++||+.++++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999998764

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.98  E-value=2.5e-33  Score=237.75  Aligned_cols=113  Identities=47%  Similarity=0.920  Sum_probs=102.0

Q ss_pred             CCCCCcc------CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHH
Q 036087            2 GHRCCSK------QKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQ   75 (344)
Q Consensus         2 g~~c~~K------p~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~   75 (344)
                      +.+|+.+      |.+++|+||+|||++|+++|++||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||+
T Consensus        10 ~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~   88 (128)
T 1h8a_C           10 DVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDR   88 (128)
T ss_dssp             ------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHH
T ss_pred             HHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHH
Confidence            3478776      889999999999999999999999888999999998 999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhhhh
Q 036087           76 IIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL  115 (344)
Q Consensus        76 ~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkkkl  115 (344)
                      +|++++.+||++|..||+.|||||+++|++||+.++++++
T Consensus        89 ~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~~  128 (128)
T 1h8a_C           89 IIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV  128 (128)
T ss_dssp             HHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999988753

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.98  E-value=9.1e-33  Score=235.51  Aligned_cols=110  Identities=35%  Similarity=0.672  Sum_probs=104.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCCchHHH
Q 036087           12 KKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQI   91 (344)
Q Consensus        12 kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~I   91 (344)
                      .||+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||++|..|
T Consensus         1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I   79 (131)
T 3zqc_A            1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI   79 (131)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence            379999999999999999999889999999998 9999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCCCHHHHHHHHHHHhhhhhhhCCCCc
Q 036087           92 AKHLPGRTDNEVKNYWNSCIKKKLMSKGLDP  122 (344)
Q Consensus        92 Ak~lpgRT~~qcknRW~~~lkkkl~~~~~~~  122 (344)
                      |++|||||+++|++||+.++++++....++.
T Consensus        80 a~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~  110 (131)
T 3zqc_A           80 AKLIPGRTDNAIKNRWNSSISKRISTNSNHK  110 (131)
T ss_dssp             TTTSTTCCHHHHHHHHHHTTGGGCCCCTTSC
T ss_pred             HHHcCCCCHHHHHHHHHHHHHHHhhcCCCcc
Confidence            9999999999999999999999987766543

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.98  E-value=4.9e-33  Score=229.55  Aligned_cols=104  Identities=30%  Similarity=0.585  Sum_probs=100.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCCchHHHh
Q 036087           13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIA   92 (344)
Q Consensus        13 kg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IA   92 (344)
                      ||+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|++++.+||++|..||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            68999999999999999999889999999998 99999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCCHHHHHHHHHHHhhhhhhh
Q 036087           93 KHLPGRTDNEVKNYWNSCIKKKLMS  117 (344)
Q Consensus        93 k~lpgRT~~qcknRW~~~lkkkl~~  117 (344)
                      +.|||||+++|++||+.++++..+.
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence            9999999999999999999886554

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=2.1e-33  Score=246.11  Aligned_cols=136  Identities=27%  Similarity=0.559  Sum_probs=91.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCC-chH
Q 036087           11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGN-RWA   89 (344)
Q Consensus        11 ~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~-kW~   89 (344)
                      +++++||+|||++|+++|++||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|.
T Consensus         4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~   82 (159)
T 1h89_C            4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS   82 (159)
T ss_dssp             ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence            6789999999999999999999889999999998 99999999999999999999999999999999999999996 699


Q ss_pred             HHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccCchhhhhhcccccccccccC
Q 036087           90 QIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASSKIACNIQLP  147 (344)
Q Consensus        90 ~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~~ll~~~q~~~~~~~~~~~~~~p  147 (344)
                      .||+.|||||+.||++||.++|.+.+.+..|+++++.+|..+....+.+|..++..+|
T Consensus        83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~  140 (159)
T 1h89_C           83 VIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLP  140 (159)
T ss_dssp             HHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTST
T ss_pred             HHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCC
Confidence            9999999999999999999999999999999999999998888888889987777655

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.97  E-value=2.1e-32  Score=232.02  Aligned_cols=106  Identities=36%  Similarity=0.698  Sum_probs=101.7

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCC
Q 036087            7 SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGN   86 (344)
Q Consensus         7 ~Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~   86 (344)
                      .+++.++|+||+|||++|+++|++||. +|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|++++.+||+
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence            467899999999999999999999998 9999999998 99999999999999999999999999999999999999999


Q ss_pred             chHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 036087           87 RWAQIAKHLPGRTDNEVKNYWNSCIKKK  114 (344)
Q Consensus        87 kW~~IAk~lpgRT~~qcknRW~~~lkkk  114 (344)
                      +|..||+.|||||+++|++||+.++++.
T Consensus        83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           83 QWAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             CHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            9999999999999999999999988774

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=5.3e-31  Score=230.89  Aligned_cols=112  Identities=46%  Similarity=0.897  Sum_probs=105.0

Q ss_pred             CCCCcc------CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHH
Q 036087            3 HRCCSK------QKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQI   76 (344)
Q Consensus         3 ~~c~~K------p~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~   76 (344)
                      .+|.++      |.+++|+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||.+
T Consensus        42 ~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~  120 (159)
T 1h89_C           42 VQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRI  120 (159)
T ss_dssp             -CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHH
T ss_pred             HHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHH
Confidence            467665      889999999999999999999999878999999998 9999999999999999999999999999999


Q ss_pred             HHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhhhh
Q 036087           77 IIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL  115 (344)
Q Consensus        77 Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkkkl  115 (344)
                      |++++.+||++|..||+.|||||+++|++||+.++++++
T Consensus       121 L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~~  159 (159)
T 1h89_C          121 IYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV  159 (159)
T ss_dssp             HHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC--
T ss_pred             HHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999999999999999999988764

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.89  E-value=2.6e-24  Score=182.28  Aligned_cols=108  Identities=24%  Similarity=0.523  Sum_probs=81.7

Q ss_pred             cccccccccCcccccchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCC-chHHHhhhCCCCCHHHHHHHHHHHhhhhhhh
Q 036087           39 VPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGN-RWAQIAKHLPGRTDNEVKNYWNSCIKKKLMS  117 (344)
Q Consensus        39 IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~  117 (344)
                      ||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||.++|.+.+.+
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence            788898 99999999999999999999999999999999999999995 6999999999999999999999999999999


Q ss_pred             CCCCccccccCchhhhhhcccccccccccC
Q 036087          118 KGLDPKTHILMPSHQRAAASSKIACNIQLP  147 (344)
Q Consensus       118 ~~~~~~e~~ll~~~q~~~~~~~~~~~~~~p  147 (344)
                      +.|+++|+.+|..+....+..|..++..+|
T Consensus        80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~  109 (128)
T 1h8a_C           80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLP  109 (128)
T ss_dssp             SCCCHHHHHHHHHHHHHHCSCHHHHGGGST
T ss_pred             ccCCHHHHHHHHHHHHHHCcCHHHHHHHCC
Confidence            999999999998888888889988777655

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=6.5e-22  Score=151.51  Aligned_cols=67  Identities=27%  Similarity=0.640  Sum_probs=64.4

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHHHH
Q 036087            7 SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEE   74 (344)
Q Consensus         7 ~Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED   74 (344)
                      ..+.+++|+||+|||++|+++|++||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            46789999999999999999999999779999999999 99999999999999999999999999997

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.72  E-value=3.8e-18  Score=158.34  Aligned_cols=106  Identities=18%  Similarity=0.313  Sum_probs=92.5

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCC-----ccccccccccccCcccccchhhcccCCCCC-----------------
Q 036087            8 KQKVKKGLWSPEEDEKLLKHITAHGHGS-----WSSVPKLAGLQRCGKSCRLRWINYLRPDLR-----------------   65 (344)
Q Consensus         8 Kp~~kkg~WT~EEDe~L~~lV~kyG~~~-----W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lk-----------------   65 (344)
                      .+.+++++||+|||++|+++|++||..+     |..||+.|+ |||+.|||.||..+|.+.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            4678899999999999999999998743     999999999 99999999999999999986                 


Q ss_pred             ------------CCCCCHHHHHHHHHHHHh-c------------------------------------------------
Q 036087           66 ------------RGSFTEEEEQIIIDVHRI-L------------------------------------------------   84 (344)
Q Consensus        66 ------------kg~WT~EED~~Ll~lv~~-~------------------------------------------------   84 (344)
                                  +..||.+||-.|...+.+ +                                                
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        789999999999998876 1                                                


Q ss_pred             -----C----CchHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 036087           85 -----G----NRWAQIAKHLPGRTDNEVKNYWNSCIKKK  114 (344)
Q Consensus        85 -----G----~kW~~IAk~lpgRT~~qcknRW~~~lkkk  114 (344)
                           |    ..|.+||+.+|+||.+++|+||..+++..
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                 1    16999999999999999999999888765

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.68  E-value=1.8e-17  Score=128.65  Aligned_cols=58  Identities=24%  Similarity=0.336  Sum_probs=47.3

Q ss_pred             cchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHh
Q 036087           53 RLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCI  111 (344)
Q Consensus        53 r~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~l  111 (344)
                      .-||.++|+|++++++||+|||++|++++.+||++|+.||+.| |||+++||+||+.+.
T Consensus        10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A           10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            4589999999999999999999999999999999999999999 999999999998654

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.68  E-value=5.9e-18  Score=142.99  Aligned_cols=82  Identities=21%  Similarity=0.374  Sum_probs=77.4

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc----ccccCcccccchhhcccC-----CCCCCC-CCCHHHHHHH
Q 036087            8 KQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLA----GLQRCGKSCRLRWINYLR-----PDLRRG-SFTEEEEQII   77 (344)
Q Consensus         8 Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~----~~~Rt~~QCr~Rw~n~L~-----p~lkkg-~WT~EED~~L   77 (344)
                      +++.++++||+|||+.|+++|++||.++|..|++.+    . +||+.+|++||+++|+     |.++++ +|+++|+.+|
T Consensus        12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv   90 (121)
T 2juh_A           12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV   90 (121)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence            478899999999999999999999999999999975    5 8999999999999998     999999 9999999999


Q ss_pred             HHHHHhcCCchHH
Q 036087           78 IDVHRILGNRWAQ   90 (344)
Q Consensus        78 l~lv~~~G~kW~~   90 (344)
                      ++++..+|++|.+
T Consensus        91 ~~~h~~~gn~~~~  103 (121)
T 2juh_A           91 LAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHccchhc
Confidence            9999999999986

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=6.3e-17  Score=123.69  Aligned_cols=65  Identities=17%  Similarity=0.365  Sum_probs=62.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCcccc
Q 036087           61 RPDLRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTH  125 (344)
Q Consensus        61 ~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~  125 (344)
                      .|.+++++||+|||++|+++|.+|| ++|..||++|+|||+.|||+||+++|++.++++.|+++++
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            4678999999999999999999999 7999999999999999999999999999999999998876

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.67  E-value=1.7e-17  Score=123.10  Aligned_cols=58  Identities=26%  Similarity=0.494  Sum_probs=54.7

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCC
Q 036087            7 SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLR   65 (344)
Q Consensus         7 ~Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lk   65 (344)
                      ..|.+++++||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|.++
T Consensus         2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            35789999999999999999999999779999999998 99999999999999999875

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.66  E-value=2e-17  Score=119.38  Aligned_cols=52  Identities=42%  Similarity=0.821  Sum_probs=49.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCC
Q 036087           11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD   63 (344)
Q Consensus        11 ~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~   63 (344)
                      +++|+||+|||++|+++|.+||.++|..||+.|+ +|+++||++||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5799999999999999999999888999999998 999999999999999984

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.66  E-value=4.9e-17  Score=137.57  Aligned_cols=79  Identities=20%  Similarity=0.316  Sum_probs=73.5

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc----ccccCcccccchhhccc-----CCCCCCCCCCHHH-HHHH
Q 036087            8 KQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLA----GLQRCGKSCRLRWINYL-----RPDLRRGSFTEEE-EQII   77 (344)
Q Consensus         8 Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~----~~~Rt~~QCr~Rw~n~L-----~p~lkkg~WT~EE-D~~L   77 (344)
                      +++.++++||+|||+.|+++|++||.++|..|++.+    . +||+.||++||++++     +|.++++.|+++| +.+|
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v  104 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence            467789999999999999999999999999999864    4 899999999999999     8999999999999 8999


Q ss_pred             HHHHHhcCCc
Q 036087           78 IDVHRILGNR   87 (344)
Q Consensus        78 l~lv~~~G~k   87 (344)
                      ++++..+|++
T Consensus       105 ~~~h~~~g~~  114 (122)
T 2roh_A          105 LAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhhH
Confidence            9999999974

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.65  E-value=1.8e-16  Score=121.92  Aligned_cols=65  Identities=29%  Similarity=0.383  Sum_probs=59.8

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCcccc
Q 036087           60 LRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTH  125 (344)
Q Consensus        60 L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~  125 (344)
                      ++|.+++++||+|||++|++++.+||.+|..||++|+|||++|||+||+.++++.++. ++++++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~~   67 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKETP   67 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCcc
Confidence            5789999999999999999999999999999999999999999999999999998766 6766554

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=1.6e-16  Score=120.13  Aligned_cols=60  Identities=17%  Similarity=0.357  Sum_probs=57.2

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCC
Q 036087           59 YLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKG  119 (344)
Q Consensus        59 ~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~  119 (344)
                      +|+|.+++++||+|||++|++++++||.+|..||+ ++|||++|||+||+.+|++.+.+..
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            79999999999999999999999999999999999 8899999999999999999887654

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.64  E-value=3e-17  Score=118.39  Aligned_cols=52  Identities=33%  Similarity=0.698  Sum_probs=48.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCC
Q 036087           11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD   63 (344)
Q Consensus        11 ~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~   63 (344)
                      +++|+||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5789999999999999999999989999999998 999999999999999984

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.64  E-value=4.7e-17  Score=124.14  Aligned_cols=63  Identities=22%  Similarity=0.351  Sum_probs=58.3

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccc-ccCcccccchhhcccCCCCCCCCCC
Q 036087            8 KQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGL-QRCGKSCRLRWINYLRPDLRRGSFT   70 (344)
Q Consensus         8 Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~-~Rt~~QCr~Rw~n~L~p~lkkg~WT   70 (344)
                      +++.++++||+|||++|+++|++||.++|..||..|++ +|++.||++||.++|+|.+.++..+
T Consensus         5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            57788999999999999999999998899999999975 8999999999999999999987654

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.61  E-value=3.2e-16  Score=132.43  Aligned_cols=87  Identities=15%  Similarity=0.318  Sum_probs=79.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccCchhhhhhccccc
Q 036087           61 RPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASSKI  140 (344)
Q Consensus        61 ~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~~ll~~~q~~~~~~~~  140 (344)
                      .+..++++||+|||++|+++|.+||.+|..||+.|+|||..||+.||.++|.+.+.++.|+++|+.+|..+....+..|.
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~   85 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWA   85 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999888887788898


Q ss_pred             ccccccC
Q 036087          141 ACNIQLP  147 (344)
Q Consensus       141 ~~~~~~p  147 (344)
                      .++..+|
T Consensus        86 ~Ia~~l~   92 (126)
T 3osg_A           86 IIAKFFP   92 (126)
T ss_dssp             HHHTTST
T ss_pred             HHHHHcC
Confidence            8777655

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.61  E-value=2.7e-16  Score=128.35  Aligned_cols=85  Identities=24%  Similarity=0.479  Sum_probs=78.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCC-chHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccCchhhhhhcccccc
Q 036087           63 DLRRGSFTEEEEQIIIDVHRILGN-RWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASSKIA  141 (344)
Q Consensus        63 ~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~~ll~~~q~~~~~~~~~  141 (344)
                      .+++++||+|||++|+++|.+||. +|..||+.|+|||+.||+.||.++|.+.+.++.|+++++.+|..+....+.+|..
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   80 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE   80 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence            368999999999999999999996 6999999999999999999999999999999999999999998888888888987


Q ss_pred             cccccC
Q 036087          142 CNIQLP  147 (344)
Q Consensus       142 ~~~~~p  147 (344)
                      ++..+|
T Consensus        81 Ia~~l~   86 (105)
T 1gv2_A           81 IAKLLP   86 (105)
T ss_dssp             HHTTCT
T ss_pred             HHHHcC
Confidence            777654

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.61  E-value=6.6e-16  Score=114.53  Aligned_cols=56  Identities=23%  Similarity=0.458  Sum_probs=52.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHhhhhhh
Q 036087           61 RPDLRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIKKKLM  116 (344)
Q Consensus        61 ~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~  116 (344)
                      +|.+++++||+|||++|+++|.+|| ++|..||+.|+|||+.|||+||+++|++.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            5788999999999999999999999 6999999999999999999999999988653

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.58  E-value=4.6e-16  Score=115.76  Aligned_cols=55  Identities=18%  Similarity=0.495  Sum_probs=51.9

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCC
Q 036087            8 KQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD   63 (344)
Q Consensus         8 Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~   63 (344)
                      .+.+++++||+|||++|+++|++||.++|..||+.|+ +|++.||++||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence            4789999999999999999999999779999999998 999999999999999865

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.57  E-value=2.4e-15  Score=108.38  Aligned_cols=50  Identities=28%  Similarity=0.556  Sum_probs=46.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCC-chHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087           64 LRRGSFTEEEEQIIIDVHRILGN-RWAQIAKHLPGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        64 lkkg~WT~EED~~Ll~lv~~~G~-kW~~IAk~lpgRT~~qcknRW~~~lkk  113 (344)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||+++|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999997 899999999999999999999999875

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.57  E-value=4.4e-15  Score=113.22  Aligned_cols=62  Identities=26%  Similarity=0.369  Sum_probs=56.3

Q ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHhcC-CchHHHhhhCC--CCCHHHHHHHHHHHhhhhhhhCCC
Q 036087           59 YLRPDLRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLP--GRTDNEVKNYWNSCIKKKLMSKGL  120 (344)
Q Consensus        59 ~L~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lp--gRT~~qcknRW~~~lkkkl~~~~~  120 (344)
                      ..++..++++||+|||++|+++|.+|| ++|..||+.|+  |||+.|||+||+++|++.+.+...
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~   67 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS   67 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence            346677899999999999999999999 69999999999  999999999999999998876543

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.57  E-value=3.7e-16  Score=118.13  Aligned_cols=57  Identities=25%  Similarity=0.439  Sum_probs=49.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc-cccCcccccchhhcccCCCCC
Q 036087            9 QKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAG-LQRCGKSCRLRWINYLRPDLR   65 (344)
Q Consensus         9 p~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~-~~Rt~~QCr~Rw~n~L~p~lk   65 (344)
                      ...+|++||+|||++|+++|++||.++|..||+.++ .+|++.||++||+++++|.++
T Consensus         7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            345789999999999999999999989999999754 289999999999999998764

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.56  E-value=3.8e-15  Score=107.39  Aligned_cols=50  Identities=36%  Similarity=0.744  Sum_probs=47.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCC-chHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087           64 LRRGSFTEEEEQIIIDVHRILGN-RWAQIAKHLPGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        64 lkkg~WT~EED~~Ll~lv~~~G~-kW~~IAk~lpgRT~~qcknRW~~~lkk  113 (344)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||.++|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            57899999999999999999997 699999999999999999999998875

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.55  E-value=1.1e-15  Score=125.59  Aligned_cols=82  Identities=20%  Similarity=0.330  Sum_probs=75.7

Q ss_pred             CCCCCHHHHHHHHHHHHhcCC-chHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccCchhhhhhccccccccc
Q 036087           66 RGSFTEEEEQIIIDVHRILGN-RWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASSKIACNI  144 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G~-kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~~ll~~~q~~~~~~~~~~~~  144 (344)
                      ++.||+|||++|+++|.+||. +|..||..|+|||+.||+.||.++|.+.+.++.|+++|+.+|..+....++.|..++.
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~   80 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK   80 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            589999999999999999995 8999999999999999999999999999999999999999998888888888877776


Q ss_pred             ccC
Q 036087          145 QLP  147 (344)
Q Consensus       145 ~~p  147 (344)
                      .+|
T Consensus        81 ~l~   83 (107)
T 2k9n_A           81 FLK   83 (107)
T ss_dssp             HHS
T ss_pred             HCC
Confidence            654

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.54  E-value=2.4e-15  Score=127.78  Aligned_cols=82  Identities=20%  Similarity=0.408  Sum_probs=76.6

Q ss_pred             CCCCCHHHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccCchhhhhhccccccccc
Q 036087           66 RGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAAASSKIACNI  144 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~~ll~~~q~~~~~~~~~~~~  144 (344)
                      +|+||+|||++|+++|.+|| .+|..||..|||||+.||+.||.++|.+.+.++.|+++++.+|..+....+..|..++.
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~   81 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK   81 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            78999999999999999999 67999999999999999999999999999999999999999998888888889988877


Q ss_pred             ccC
Q 036087          145 QLP  147 (344)
Q Consensus       145 ~~p  147 (344)
                      .+|
T Consensus        82 ~l~   84 (131)
T 3zqc_A           82 LIP   84 (131)
T ss_dssp             TST
T ss_pred             HcC
Confidence            765

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.52  E-value=1.3e-14  Score=105.21  Aligned_cols=49  Identities=27%  Similarity=0.449  Sum_probs=46.5

Q ss_pred             CCCCCCHHHHHHHHHHHHhcC-CchHHHhhhCC--CCCHHHHHHHHHHHhhh
Q 036087           65 RRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLP--GRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        65 kkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lp--gRT~~qcknRW~~~lkk  113 (344)
                      ++++||+|||++|+++|.+|| ++|..||..++  |||+.||++||.++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            578999999999999999999 69999999999  99999999999999875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1e-15  Score=118.28  Aligned_cols=61  Identities=21%  Similarity=0.326  Sum_probs=56.3

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-----CCccccccccccccCcccccchhhcccCCCCCCCC
Q 036087            7 SKQKVKKGLWSPEEDEKLLKHITAHGH-----GSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGS   68 (344)
Q Consensus         7 ~Kp~~kkg~WT~EEDe~L~~lV~kyG~-----~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~   68 (344)
                      ++|.++++.||+|||++|+++|.+||.     .+|..||+.|+ +||+.||+.||.++|.+.++.|.
T Consensus         2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence            579999999999999999999999995     58999999999 99999999999999998777654

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.52  E-value=1.2e-14  Score=108.03  Aligned_cols=53  Identities=17%  Similarity=0.305  Sum_probs=49.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087           61 RPDLRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        61 ~p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~lkk  113 (344)
                      .+.+.+++||+|||++|+++|.+|| ++|.+||++|+|||+.|||+||.++|..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            3578899999999999999999999 7999999999999999999999988764

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.52  E-value=2.2e-15  Score=109.26  Aligned_cols=50  Identities=26%  Similarity=0.460  Sum_probs=46.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcccccccccc-ccCcccccchhhcccC
Q 036087           12 KKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGL-QRCGKSCRLRWINYLR   61 (344)
Q Consensus        12 kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~-~Rt~~QCr~Rw~n~L~   61 (344)
                      ++|+||+|||++|+++|++||.++|..||+.+++ +|++.||++||.++++
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5899999999999999999998899999999975 6999999999999875

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=8.6e-16  Score=116.09  Aligned_cols=58  Identities=28%  Similarity=0.371  Sum_probs=53.0

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCC
Q 036087            7 SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRG   67 (344)
Q Consensus         7 ~Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg   67 (344)
                      -.|.+++++||+|||++|+++|+.||. +|..||+ +. +|++.||++||.++|+|.++++
T Consensus         3 L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            3 SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence            368899999999999999999999998 9999999 65 7999999999999999876654

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=2.1e-14  Score=110.90  Aligned_cols=58  Identities=21%  Similarity=0.216  Sum_probs=53.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcC------CchHHHhhhCCCCCHHHHHHHHHHHhhhhhhhC
Q 036087           61 RPDLRRGSFTEEEEQIIIDVHRILG------NRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSK  118 (344)
Q Consensus        61 ~p~lkkg~WT~EED~~Ll~lv~~~G------~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~  118 (344)
                      +|.+++++||+|||++|++++.+||      ++|..||++|+|||+.||++||+.+|.+.++.+
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g   66 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG   66 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence            5788999999999999999999999      789999999999999999999999998866543

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.50  E-value=4.7e-15  Score=109.69  Aligned_cols=52  Identities=19%  Similarity=0.462  Sum_probs=47.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhccc
Q 036087            9 QKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL   60 (344)
Q Consensus         9 p~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L   60 (344)
                      ..+.+++||+|||++|+++|++||.++|..||+.|+.+|+++||++||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            3466889999999999999999998899999999976899999999999875

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.49  E-value=3.7e-14  Score=107.11  Aligned_cols=52  Identities=25%  Similarity=0.484  Sum_probs=47.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHhcC-CchHHHhhhCC--CCCHHHHHHHHHHHhhhhh
Q 036087           64 LRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLP--GRTDNEVKNYWNSCIKKKL  115 (344)
Q Consensus        64 lkkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lp--gRT~~qcknRW~~~lkkkl  115 (344)
                      .++++||+|||++|+++|.+|| ++|..||+.++  |||+.|||+||++++++.+
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            4789999999999999999999 58999999865  9999999999999988754

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.46  E-value=6.1e-15  Score=113.38  Aligned_cols=58  Identities=21%  Similarity=0.355  Sum_probs=54.1

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCC
Q 036087            7 SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRR   66 (344)
Q Consensus         7 ~Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkk   66 (344)
                      ..|.+++++||+|||++|+++|++||. +|..||+.|+ +|++.||+.||.++|.+.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            468899999999999999999999999 9999999998 999999999999999876655

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.46  E-value=8.9e-14  Score=102.82  Aligned_cols=50  Identities=26%  Similarity=0.440  Sum_probs=46.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcC-CchHHHhhhCC-CCCHHHHHHHHHHHh
Q 036087           62 PDLRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLP-GRTDNEVKNYWNSCI  111 (344)
Q Consensus        62 p~lkkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lp-gRT~~qcknRW~~~l  111 (344)
                      ..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.|||+||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            456788999999999999999999 89999999999 999999999998764

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.11  E-value=2e-14  Score=115.09  Aligned_cols=57  Identities=25%  Similarity=0.310  Sum_probs=53.5

Q ss_pred             cccCCCCCCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 036087           58 NYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKK  114 (344)
Q Consensus        58 n~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkkk  114 (344)
                      ..++|.+++++||+|||++|++++.+||++|..||++|+|||++||++||++++++.
T Consensus         8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            356789999999999999999999999999999999999999999999999988874

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.40  E-value=1.1e-13  Score=114.34  Aligned_cols=79  Identities=23%  Similarity=0.327  Sum_probs=67.3

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc---cccCcccccchhhccc-----CCCCCCCCCCHHHHHH-H
Q 036087            7 SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAG---LQRCGKSCRLRWINYL-----RPDLRRGSFTEEEEQI-I   77 (344)
Q Consensus         7 ~Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~---~~Rt~~QCr~Rw~n~L-----~p~lkkg~WT~EED~~-L   77 (344)
                      .+++.++++||+|||++|+++|++||.++|..|++.+.   .+||+.+|++||++++     +|.+++|.-+++|-.. +
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv   86 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV   86 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence            45788999999999999999999999999999999652   3899999999999998     6899999888777655 7


Q ss_pred             HHHHHhcC
Q 036087           78 IDVHRILG   85 (344)
Q Consensus        78 l~lv~~~G   85 (344)
                      ++++..+|
T Consensus        87 ~~~~~~~~   94 (105)
T 2aje_A           87 LNAHGYWT   94 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77777655

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.36  E-value=2.6e-13  Score=107.62  Aligned_cols=69  Identities=23%  Similarity=0.412  Sum_probs=60.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccc----cccccCcccccchhhccc-----CCCCCCC-CCCHHHHHHHHHHHHh
Q 036087           14 GLWSPEEDEKLLKHITAHGHGSWSSVPKL----AGLQRCGKSCRLRWINYL-----RPDLRRG-SFTEEEEQIIIDVHRI   83 (344)
Q Consensus        14 g~WT~EEDe~L~~lV~kyG~~~W~~IA~~----~~~~Rt~~QCr~Rw~n~L-----~p~lkkg-~WT~EED~~Ll~lv~~   83 (344)
                      ++||+|||++|+++|++||.++|..|++.    ++ +||+.+|++||+++|     +|.++++ +..++...+++.+...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999999999985    66 899999999999988     6766665 6777777888888754

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.35  E-value=2.1e-13  Score=105.69  Aligned_cols=55  Identities=24%  Similarity=0.375  Sum_probs=48.2

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCC
Q 036087            8 KQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRR   66 (344)
Q Consensus         8 Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkk   66 (344)
                      .|++++|+||+|||++|+++|.+||. +|..||+.|  +|++.||+.||.. |....+.
T Consensus        18 dP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~   72 (73)
T 2llk_A           18 GDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCNT   72 (73)
T ss_dssp             -CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence            48999999999999999999999998 699999998  6999999999984 5544443

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.34  E-value=5e-13  Score=112.87  Aligned_cols=81  Identities=15%  Similarity=0.225  Sum_probs=64.7

Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHhcCC-chHHHhhh----CCCCCHHHHHHHHHHHhh-----hhhhhC-CCCccccccC
Q 036087           60 LRPDLRRGSFTEEEEQIIIDVHRILGN-RWAQIAKH----LPGRTDNEVKNYWNSCIK-----KKLMSK-GLDPKTHILM  128 (344)
Q Consensus        60 L~p~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IAk~----lpgRT~~qcknRW~~~lk-----kkl~~~-~~~~~e~~ll  128 (344)
                      +.+..++++||.|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+++++     +.++++ .+..++...+
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv   90 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV   90 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence            566778999999999999999999996 99999998    489999999999999998     555554 3333333445


Q ss_pred             chhhhhhccccc
Q 036087          129 PSHQRAAASSKI  140 (344)
Q Consensus       129 ~~~q~~~~~~~~  140 (344)
                      ..++..-++++.
T Consensus        91 ~~~h~~~gn~~~  102 (121)
T 2juh_A           91 LAAHAYWSQQQG  102 (121)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHccchh
Confidence            667777666663

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.34  E-value=1.3e-12  Score=101.24  Aligned_cols=52  Identities=10%  Similarity=0.300  Sum_probs=47.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcC----CchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087           62 PDLRRGSFTEEEEQIIIDVHRILG----NRWAQIAKHLPGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        62 p~lkkg~WT~EED~~Ll~lv~~~G----~kW~~IAk~lpgRT~~qcknRW~~~lkk  113 (344)
                      +...+++||.+||++|++++.+||    ++|.+||++|||||.+||++||+.+++.
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            456789999999999999999999    6899999999999999999999987653

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.31  E-value=4.4e-13  Score=105.26  Aligned_cols=50  Identities=22%  Similarity=0.456  Sum_probs=46.5

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcc
Q 036087            8 KQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY   59 (344)
Q Consensus         8 Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~   59 (344)
                      +....++.||+|||++|+++|++|| ++|..||++|+ +||+.||+.||.++
T Consensus        13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A           13 KGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             CSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             cccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            3556689999999999999999999 69999999999 99999999999998

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.27  E-value=2.8e-12  Score=100.71  Aligned_cols=48  Identities=17%  Similarity=0.379  Sum_probs=45.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHH
Q 036087           63 DLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSC  110 (344)
Q Consensus        63 ~lkkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~  110 (344)
                      ...+++||+|||++|++++.+||++|.+||++|++||..||++||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            356789999999999999999999999999999999999999999765

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.26  E-value=3.3e-12  Score=107.98  Aligned_cols=79  Identities=18%  Similarity=0.273  Sum_probs=63.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCC-chHHHhhh----CCCCCHHHHHHHHHHHhh-----hhhhhCCCCccc-cccCc
Q 036087           61 RPDLRRGSFTEEEEQIIIDVHRILGN-RWAQIAKH----LPGRTDNEVKNYWNSCIK-----KKLMSKGLDPKT-HILMP  129 (344)
Q Consensus        61 ~p~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IAk~----lpgRT~~qcknRW~~~lk-----kkl~~~~~~~~e-~~ll~  129 (344)
                      ....++++||.|||+.|+++|++||. +|..|++.    |++||+.+||+||+++++     +.++++.+.+++ ...+.
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~  105 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL  105 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence            33457899999999999999999996 99999997    389999999999999994     566666667666 34455


Q ss_pred             hhhhhhcccc
Q 036087          130 SHQRAAASSK  139 (344)
Q Consensus       130 ~~q~~~~~~~  139 (344)
                      .++..-+++.
T Consensus       106 ~~h~~~g~~~  115 (122)
T 2roh_A          106 AAQAYWSVDS  115 (122)
T ss_dssp             HHHHHHHSSC
T ss_pred             HHHHHHhhHH
Confidence            6666655543

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.92  E-value=4.5e-13  Score=107.22  Aligned_cols=54  Identities=22%  Similarity=0.533  Sum_probs=50.5

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCC
Q 036087            7 SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRP   62 (344)
Q Consensus         7 ~Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p   62 (344)
                      .-+.+++|+||+|||++|+++|.+||. +|..||..|+ +||+.||+.||.++|..
T Consensus        10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            357889999999999999999999999 8999999999 99999999999998864

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.25  E-value=5.8e-12  Score=116.98  Aligned_cols=78  Identities=23%  Similarity=0.400  Sum_probs=61.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCc------hHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccCchhhhhh
Q 036087           62 PDLRRGSFTEEEEQIIIDVHRILGNR------WAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQRAA  135 (344)
Q Consensus        62 p~lkkg~WT~EED~~Ll~lv~~~G~k------W~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~~ll~~~q~~~  135 (344)
                      +.+++++||+|||++|+++|+++|++      |..||+.|||||+++||+||+.+|++++... +...++..+.....  
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~v-y~~ded~~Li~d~~--   80 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV-YEVDKFGKLVRDDD--   80 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE-ECBCTTSCBCBCTT--
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccc-cccCcchhhhhccC--
Confidence            35678999999999999999999875      9999999999999999999999999988743 77666655554444  


Q ss_pred             cccccccc
Q 036087          136 ASSKIACN  143 (344)
Q Consensus       136 ~~~~~~~~  143 (344)
                      ++ |+.++
T Consensus        81 Gn-~ikis   87 (246)
T 1ign_A           81 GN-LIKTK   87 (246)
T ss_dssp             SC-BCEES
T ss_pred             CC-ceeee
Confidence            33 55444

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.23  E-value=1.2e-12  Score=101.35  Aligned_cols=55  Identities=9%  Similarity=0.305  Sum_probs=49.8

Q ss_pred             CccCCCCCCCCCHHHHHHHHHHHHHhCC---CCccccccccccccCcccccchhhcccC
Q 036087            6 CSKQKVKKGLWSPEEDEKLLKHITAHGH---GSWSSVPKLAGLQRCGKSCRLRWINYLR   61 (344)
Q Consensus         6 ~~Kp~~kkg~WT~EEDe~L~~lV~kyG~---~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~   61 (344)
                      .+++...++.||+|||++|++++.+||.   .+|.+||+.|+ |||..||+.||.+++.
T Consensus        11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            4667888999999999999999999993   47999999999 9999999999998764

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.20  E-value=2.6e-11  Score=100.02  Aligned_cols=53  Identities=21%  Similarity=0.414  Sum_probs=47.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCC-chHHHhhhC----CCCCHHHHHHHHHHHhhh
Q 036087           61 RPDLRRGSFTEEEEQIIIDVHRILGN-RWAQIAKHL----PGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        61 ~p~lkkg~WT~EED~~Ll~lv~~~G~-kW~~IAk~l----pgRT~~qcknRW~~~lkk  113 (344)
                      .+..++++||.|||+.|+++|.+||. +|+.|++.+    +|||+.+||+||+++++.
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~   65 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT   65 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            34568899999999999999999996 999999965    899999999999999974

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.19  E-value=2.6e-11  Score=96.10  Aligned_cols=48  Identities=21%  Similarity=0.493  Sum_probs=44.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCC-chHHHhhh----CCCCCHHHHHHHHHHHhhhh
Q 036087           67 GSFTEEEEQIIIDVHRILGN-RWAQIAKH----LPGRTDNEVKNYWNSCIKKK  114 (344)
Q Consensus        67 g~WT~EED~~Ll~lv~~~G~-kW~~IAk~----lpgRT~~qcknRW~~~lkkk  114 (344)
                      .+||.|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+++++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~   53 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   53 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence            47999999999999999996 99999996    89999999999999999754

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.16  E-value=3.8e-11  Score=90.04  Aligned_cols=49  Identities=24%  Similarity=0.452  Sum_probs=45.6

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCchHHHh---hhCCCCCHHHHHHHHHHHhhh
Q 036087           65 RRGSFTEEEEQIIIDVHRILGNRWAQIA---KHLPGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        65 kkg~WT~EED~~Ll~lv~~~G~kW~~IA---k~lpgRT~~qcknRW~~~lkk  113 (344)
                      ++.+||+|||+.|+++|++||.+|..|+   ..+++||..++|+||+++.+.
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            6789999999999999999999999999   467999999999999998765

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.14  E-value=6.1e-11  Score=95.84  Aligned_cols=50  Identities=22%  Similarity=0.458  Sum_probs=45.5

Q ss_pred             CCCCCCHHHHHHHHHHHHhcC----CchHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 036087           65 RRGSFTEEEEQIIIDVHRILG----NRWAQIAKHLPGRTDNEVKNYWNSCIKKK  114 (344)
Q Consensus        65 kkg~WT~EED~~Ll~lv~~~G----~kW~~IAk~lpgRT~~qcknRW~~~lkkk  114 (344)
                      .+++||.|||++|++++.+||    ++|.+||+.|||||.++|++||+.+++..
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    68999999999999999999999987664

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=2.7e-09  Score=79.45  Aligned_cols=48  Identities=19%  Similarity=0.182  Sum_probs=44.3

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhh
Q 036087           65 RRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIK  112 (344)
Q Consensus        65 kkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lk  112 (344)
                      ..++||+||++++++++.+||.+|..||..||+||..+|+.+|+...+
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            457999999999999999999999999999999999999999986544

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.89  E-value=2.1e-10  Score=92.68  Aligned_cols=48  Identities=13%  Similarity=0.338  Sum_probs=43.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---CCccccccccccccCcccccchhhccc
Q 036087           12 KKGLWSPEEDEKLLKHITAHGH---GSWSSVPKLAGLQRCGKSCRLRWINYL   60 (344)
Q Consensus        12 kkg~WT~EEDe~L~~lV~kyG~---~~W~~IA~~~~~~Rt~~QCr~Rw~n~L   60 (344)
                      .++.||+|||++|++++.+||.   ..|.+||+.|+ |||..||+.||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            4678999999999999999973   46999999999 999999999999864

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.86  E-value=3.6e-09  Score=85.46  Aligned_cols=67  Identities=16%  Similarity=0.238  Sum_probs=60.2

Q ss_pred             cccccchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCCchHHHhhhC-----CCCCHHHHHHHHHHHhhhhhhhCC
Q 036087           49 GKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHL-----PGRTDNEVKNYWNSCIKKKLMSKG  119 (344)
Q Consensus        49 ~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IAk~l-----pgRT~~qcknRW~~~lkkkl~~~~  119 (344)
                      +.=+.++|.++|.+    .+||.||+..|++|+++||.+|..|+..+     ++||..++|+||+.+.++.+...+
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~   88 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            45678999999976    79999999999999999999999999998     589999999999999888776653

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.83  E-value=4.7e-09  Score=80.95  Aligned_cols=56  Identities=23%  Similarity=0.291  Sum_probs=47.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcC----CchHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCC
Q 036087           63 DLRRGSFTEEEEQIIIDVHRILG----NRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKG  119 (344)
Q Consensus        63 ~lkkg~WT~EED~~Ll~lv~~~G----~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~  119 (344)
                      ..+.+.||.||+++|.+++.+|+    ++|.+||+.+ |||..+|++||..+.+...+..|
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G   64 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPG   64 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCC
Confidence            34678999999999999999997    6799999998 99999999999988766443333

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=2.1e-09  Score=79.99  Aligned_cols=55  Identities=13%  Similarity=0.239  Sum_probs=48.7

Q ss_pred             CCCccCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhccc
Q 036087            4 RCCSKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL   60 (344)
Q Consensus         4 ~c~~Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L   60 (344)
                      .-.++.+...++||+||++++.+++.+||. +|..||..|+ +|+..||+.+|....
T Consensus         3 ~~~~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            3 SGSSGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CSCCCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred             CccccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence            345667778899999999999999999996 9999999999 999999999987543

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.72  E-value=3e-09  Score=79.79  Aligned_cols=49  Identities=14%  Similarity=0.280  Sum_probs=44.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccc---cccccccCcccccchhhcccC
Q 036087           11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVP---KLAGLQRCGKSCRLRWINYLR   61 (344)
Q Consensus        11 ~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA---~~~~~~Rt~~QCr~Rw~n~L~   61 (344)
                      ..+.+||+|||+.|+++|++||. +|..|+   ..+. +|+...+++||++..+
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence            36889999999999999999998 999999   4665 8999999999998664

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.60  E-value=4.8e-08  Score=90.16  Aligned_cols=49  Identities=18%  Similarity=0.371  Sum_probs=45.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087           65 RRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        65 kkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkk  113 (344)
                      ..+.||+||++++++++.+||++|..||+.+++||..|||++|+..+++
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4579999999999999999999999999999999999999999987765

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.46  E-value=2.6e-08  Score=76.76  Aligned_cols=51  Identities=14%  Similarity=0.257  Sum_probs=44.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC---CCccccccccccccCcccccchhhcccC
Q 036087            9 QKVKKGLWSPEEDEKLLKHITAHGH---GSWSSVPKLAGLQRCGKSCRLRWINYLR   61 (344)
Q Consensus         9 p~~kkg~WT~EEDe~L~~lV~kyG~---~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~   61 (344)
                      .+.+++.||.|||++|.+++.+|+.   +.|.+||..+|  |+..+|+.||..+..
T Consensus         4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence            3456789999999999999999984   46999999985  999999999987654

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.45  E-value=1.9e-07  Score=72.18  Aligned_cols=48  Identities=17%  Similarity=0.242  Sum_probs=43.1

Q ss_pred             CCCCCHHHHHHHHHHHHhcC----CchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087           66 RGSFTEEEEQIIIDVHRILG----NRWAQIAKHLPGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G----~kW~~IAk~lpgRT~~qcknRW~~~lkk  113 (344)
                      ...||.+|+++|.+++..|+    .+|.+||..++|||..+|+.||..+++.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            46899999999999999998    4699999999999999999999887443

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.43  E-value=1.3e-07  Score=95.77  Aligned_cols=47  Identities=19%  Similarity=0.400  Sum_probs=43.0

Q ss_pred             CCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087           67 GSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        67 g~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkk  113 (344)
                      ..||.+|-+++++++.+||..|..||+.+.+||..|||++|....++
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr  427 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  427 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999764443

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.32  E-value=9.4e-08  Score=70.92  Aligned_cols=48  Identities=21%  Similarity=0.392  Sum_probs=43.0

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccccccCcccccchhhcccC
Q 036087           13 KGLWSPEEDEKLLKHITAH--------GHGSWSSVPK-LAGLQRCGKSCRLRWINYLR   61 (344)
Q Consensus        13 kg~WT~EEDe~L~~lV~ky--------G~~~W~~IA~-~~~~~Rt~~QCr~Rw~n~L~   61 (344)
                      |.+||+|||++|+++|.+|        |..-|..+|+ .++ ++|-.+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            6789999999999999999        4445999999 787 9999999999999875

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.29  E-value=8.6e-07  Score=65.70  Aligned_cols=47  Identities=21%  Similarity=0.412  Sum_probs=42.2

Q ss_pred             CCCCCHHHHHHHHHHHHhc--------CCc-hHHHhh-hCCCCCHHHHHHHHHHHhh
Q 036087           66 RGSFTEEEEQIIIDVHRIL--------GNR-WAQIAK-HLPGRTDNEVKNYWNSCIK  112 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~--------G~k-W~~IAk-~lpgRT~~qcknRW~~~lk  112 (344)
                      +.+||+|||++|++.|.+|        |+. |.++++ .+|++|-.++|+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        544 999999 7999999999999987664

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.25  E-value=2e-07  Score=72.10  Aligned_cols=48  Identities=25%  Similarity=0.495  Sum_probs=43.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC---CCccccccccccccCcccccchhhcccC
Q 036087           13 KGLWSPEEDEKLLKHITAHGH---GSWSSVPKLAGLQRCGKSCRLRWINYLR   61 (344)
Q Consensus        13 kg~WT~EEDe~L~~lV~kyG~---~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~   61 (344)
                      ...||.+|+.+|.+++..|+.   +.|..||..+| +|+..+|+.||..++.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            467999999999999999976   46999999999 9999999999997754

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.24  E-value=3.1e-07  Score=84.80  Aligned_cols=50  Identities=18%  Similarity=0.387  Sum_probs=45.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccC
Q 036087           10 KVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR   61 (344)
Q Consensus        10 ~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~   61 (344)
                      ....++||+||++++++++.+||. +|..||+.++ +||..||+.+|.++.+
T Consensus       130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            345779999999999999999997 9999999999 9999999999998764

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.04  E-value=9.4e-06  Score=60.65  Aligned_cols=51  Identities=20%  Similarity=0.294  Sum_probs=45.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCCchHHHhh-hCCCCCHHHHHHHHHHHh
Q 036087           61 RPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAK-HLPGRTDNEVKNYWNSCI  111 (344)
Q Consensus        61 ~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IAk-~lpgRT~~qcknRW~~~l  111 (344)
                      .|.++...||+||-++..+++.+||..|..|++ .+++||..+|...|+...
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK   55 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWK   55 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhccc
Confidence            366778899999999999999999999999999 489999999999887543

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.02  E-value=8.9e-06  Score=78.22  Aligned_cols=100  Identities=16%  Similarity=0.241  Sum_probs=80.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccc-------hhhcc---------------------------
Q 036087           14 GLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRL-------RWINY---------------------------   59 (344)
Q Consensus        14 g~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~-------Rw~n~---------------------------   59 (344)
                      +.||..+...++.++.+||..+|..||..|+ +++...++.       ||..+                           
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999999998 888877643       22110                           


Q ss_pred             -------------c---CCCCCCCCCCHHHHHHHHHHHHhcCC----chHHHhh------------hCCCCCHHHHHHHH
Q 036087           60 -------------L---RPDLRRGSFTEEEEQIIIDVHRILGN----RWAQIAK------------HLPGRTDNEVKNYW  107 (344)
Q Consensus        60 -------------L---~p~lkkg~WT~EED~~Ll~lv~~~G~----kW~~IAk------------~lpgRT~~qcknRW  107 (344)
                                   |   .+.-++..||++||..|+-.+.+||-    .|..|..            .+..||+.+|..|.
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                         1   02224568999999999999999994    5999972            34679999999999


Q ss_pred             HHHhhhh
Q 036087          108 NSCIKKK  114 (344)
Q Consensus       108 ~~~lkkk  114 (344)
                      +.+++--
T Consensus       270 ~tLi~~i  276 (304)
T 1ofc_X          270 NTLITLI  276 (304)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998753

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.90  E-value=2.9e-06  Score=65.48  Aligned_cols=43  Identities=23%  Similarity=0.369  Sum_probs=38.6

Q ss_pred             CCCCCHHHHHHHHHHHHhcCC----chHHHhhhCCCCCHHHHHHHHH
Q 036087           66 RGSFTEEEEQIIIDVHRILGN----RWAQIAKHLPGRTDNEVKNYWN  108 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G~----kW~~IAk~lpgRT~~qcknRW~  108 (344)
                      .+.||.+|+++|..++.+|+.    +|.+||..+||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999984    7999999999999999999885

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.88  E-value=1.6e-05  Score=63.72  Aligned_cols=49  Identities=18%  Similarity=0.302  Sum_probs=44.5

Q ss_pred             CCCCCHHHHHHHHHHHHhcCC---chHHHhhhCCCCCHHHHHHHHHHHhhhh
Q 036087           66 RGSFTEEEEQIIIDVHRILGN---RWAQIAKHLPGRTDNEVKNYWNSCIKKK  114 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G~---kW~~IAk~lpgRT~~qcknRW~~~lkkk  114 (344)
                      --.||.|||+.|+...++-|.   .|..||+.|.+|+.+||++||+.+++-.
T Consensus        33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf   84 (95)
T 1ug2_A           33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            346999999999999999985   7999999999999999999999988753

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.80  E-value=4.5e-05  Score=61.40  Aligned_cols=61  Identities=18%  Similarity=0.286  Sum_probs=51.9

Q ss_pred             chhhcccCCCCCCCCCCHHHHHHHHHHHHhcCCchHHHhhhCC-----CCCHHHHHHHHHHHhhhhhhhC
Q 036087           54 LRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNRWAQIAKHLP-----GRTDNEVKNYWNSCIKKKLMSK  118 (344)
Q Consensus        54 ~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lp-----gRT~~qcknRW~~~lkkkl~~~  118 (344)
                      +.|..+|.    ...||.||...|++|+++|+-+|..|+..+.     .||-.++|.||+.+.++.++..
T Consensus        22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r   87 (93)
T 4iej_A           22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            34556665    3689999999999999999999999998873     7999999999999988876554

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.74  E-value=5e-06  Score=64.18  Aligned_cols=44  Identities=11%  Similarity=0.245  Sum_probs=39.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC---CccccccccccccCcccccchhh
Q 036087           13 KGLWSPEEDEKLLKHITAHGHG---SWSSVPKLAGLQRCGKSCRLRWI   57 (344)
Q Consensus        13 kg~WT~EEDe~L~~lV~kyG~~---~W~~IA~~~~~~Rt~~QCr~Rw~   57 (344)
                      .+.||.+|+++|.+++..|+.+   .|.+||..+| ||+..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            5679999999999999999764   6999999999 999999999985

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.90  E-value=4.7e-06  Score=63.37  Aligned_cols=45  Identities=20%  Similarity=0.361  Sum_probs=41.8

Q ss_pred             CCCHHHHHHHHHHHHhcCC---chHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087           68 SFTEEEEQIIIDVHRILGN---RWAQIAKHLPGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        68 ~WT~EED~~Ll~lv~~~G~---kW~~IAk~lpgRT~~qcknRW~~~lkk  113 (344)
                      .||.|||+.|+..+++-|.   .|+.||+.| +|+.+||.+||..+++-
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L   63 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL   63 (70)
Confidence            6999999999999999996   799999999 99999999999987754

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.65  E-value=2.1e-05  Score=58.78  Aligned_cols=50  Identities=14%  Similarity=0.203  Sum_probs=45.4

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccCcccccchhhc
Q 036087            7 SKQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPK-LAGLQRCGKSCRLRWIN   58 (344)
Q Consensus         7 ~Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~-~~~~~Rt~~QCr~Rw~n   58 (344)
                      ..|.++...||+||-++..+++.+||. +|..|++ .++ +|+..+|..-|..
T Consensus         3 ~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            3 SGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred             CCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence            568888999999999999999999998 9999998 588 9999999887753

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.48  E-value=0.00016  Score=58.08  Aligned_cols=45  Identities=18%  Similarity=0.204  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHH
Q 036087           66 RGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSC  110 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~  110 (344)
                      ...||+||.++..+....||.+|..||..|++||..+|...|+..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            458999999999999999999999999999999999999988754

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.48  E-value=0.00023  Score=54.23  Aligned_cols=44  Identities=14%  Similarity=0.305  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCchHHHhh-hCCCCCHHHHHHHHHH
Q 036087           66 RGSFTEEEEQIIIDVHRILGNRWAQIAK-HLPGRTDNEVKNYWNS  109 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G~kW~~IAk-~lpgRT~~qcknRW~~  109 (344)
                      ...||+||-++..+++.+||..|..|++ .|++||..+|...|+.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4589999999999999999999999999 5899999999999874

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.38  E-value=5.2e-05  Score=76.92  Aligned_cols=47  Identities=17%  Similarity=0.383  Sum_probs=43.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcc
Q 036087           11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY   59 (344)
Q Consensus        11 ~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~   59 (344)
                      ....+||.||-+++++++.+||. +|..||+.++ +|+..||+..|.++
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~  424 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNY  424 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            34689999999999999999998 9999999999 99999999998765

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.34  E-value=5.2e-05  Score=61.08  Aligned_cols=49  Identities=10%  Similarity=0.217  Sum_probs=43.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccccccc----cccCcccccchhhccc
Q 036087           11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAG----LQRCGKSCRLRWINYL   60 (344)
Q Consensus        11 ~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~----~~Rt~~QCr~Rw~n~L   60 (344)
                      ++...||.||+..|++++++|+. .|..|+.++.    .+|+..++++||..+.
T Consensus        28 L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            34589999999999999999998 9999999883    2799999999998754

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.02  E-value=0.00062  Score=53.17  Aligned_cols=49  Identities=18%  Similarity=0.432  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHhcC----------CchHHHhhhC----CCCCHHHHHHHHHHHhhhh
Q 036087           66 RGSFTEEEEQIIIDVHRILG----------NRWAQIAKHL----PGRTDNEVKNYWNSCIKKK  114 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G----------~kW~~IAk~l----pgRT~~qcknRW~~~lkkk  114 (344)
                      ...||.+|-..||++...+.          ..|..||..|    -.||+.||+.+|.++.+.-
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y   66 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF   66 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            46899999999999987632          1499999986    3799999999999977763

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.98  E-value=7.5e-05  Score=58.48  Aligned_cols=50  Identities=20%  Similarity=0.494  Sum_probs=40.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC------C---Ccccccccc---ccccCcccccchhhccc
Q 036087           11 VKKGLWSPEEDEKLLKHITAHGH------G---SWSSVPKLA---GLQRCGKSCRLRWINYL   60 (344)
Q Consensus        11 ~kkg~WT~EEDe~L~~lV~kyG~------~---~W~~IA~~~---~~~Rt~~QCr~Rw~n~L   60 (344)
                      .+...||.+|-.+|+++...+..      .   -|..||..|   |..|++.||+.+|.++.
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            35678999999999999976421      1   499999876   35799999999998754

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.88  E-value=0.00031  Score=56.42  Aligned_cols=44  Identities=16%  Similarity=0.400  Sum_probs=40.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhc
Q 036087           13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWIN   58 (344)
Q Consensus        13 kg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n   58 (344)
                      ...||+||.++..++...||. +|..||+.++ +|+..+|...|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHhc
Confidence            468999999999999999998 9999999998 9999999987753

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.84  E-value=0.0019  Score=57.83  Aligned_cols=46  Identities=13%  Similarity=0.180  Sum_probs=37.2

Q ss_pred             CCCHHHHHHHHHHHHhcC-CchHHHhhhC--------------CCCCHHHHHHHHHHHhhh
Q 036087           68 SFTEEEEQIIIDVHRILG-NRWAQIAKHL--------------PGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        68 ~WT~EED~~Ll~lv~~~G-~kW~~IAk~l--------------pgRT~~qcknRW~~~lkk  113 (344)
                      .||.+||..|+..+.+|| ++|..|....              ..++...+..|...+|+-
T Consensus       136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~  196 (211)
T 4b4c_A          136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL  196 (211)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence            599999999999999999 8999997521              124677899998877663

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.79  E-value=0.0027  Score=62.57  Aligned_cols=101  Identities=17%  Similarity=0.248  Sum_probs=77.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcc----------------------------------
Q 036087           14 GLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY----------------------------------   59 (344)
Q Consensus        14 g~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~----------------------------------   59 (344)
                      +.||.-+=..++.++.+||..+-..||..|+.+++...++ +|.++                                  
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~  202 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA  202 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999999885356666555 22211                                  


Q ss_pred             --------------cC---CCC--CCCCCCHHHHHHHHHHHHhcC----CchHHHhhh------------CCCCCHHHHH
Q 036087           60 --------------LR---PDL--RRGSFTEEEEQIIIDVHRILG----NRWAQIAKH------------LPGRTDNEVK  104 (344)
Q Consensus        60 --------------L~---p~l--kkg~WT~EED~~Ll~lv~~~G----~kW~~IAk~------------lpgRT~~qck  104 (344)
                                    |.   +.-  ++..||++||..|+-++.+||    +.|..|-..            +..||+..|.
T Consensus       203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~  282 (374)
T 2y9y_A          203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA  282 (374)
T ss_dssp             HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred             HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence                          10   111  355799999999999999999    459999543            3569999999


Q ss_pred             HHHHHHhhhhh
Q 036087          105 NYWNSCIKKKL  115 (344)
Q Consensus       105 nRW~~~lkkkl  115 (344)
                      .|...+++--.
T Consensus       283 rRc~tLi~~Ie  293 (374)
T 2y9y_A          283 RRGNTLLQCLE  293 (374)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999997543

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.74  E-value=0.00074  Score=51.35  Aligned_cols=45  Identities=11%  Similarity=0.116  Sum_probs=40.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccccCcccccchhhc
Q 036087           12 KKGLWSPEEDEKLLKHITAHGHGSWSSVPK-LAGLQRCGKSCRLRWIN   58 (344)
Q Consensus        12 kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~-~~~~~Rt~~QCr~Rw~n   58 (344)
                      ....||+||-++..+++.+||. +|..|++ .++ +|+..+|..-|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence            5568999999999999999998 9999999 588 9999999987753

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.28  E-value=0.0011  Score=52.97  Aligned_cols=50  Identities=20%  Similarity=0.339  Sum_probs=43.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC--CCccccccccccccCcccccchhhcc
Q 036087            9 QKVKKGLWSPEEDEKLLKHITAHGH--GSWSSVPKLAGLQRCGKSCRLRWINY   59 (344)
Q Consensus         9 p~~kkg~WT~EEDe~L~~lV~kyG~--~~W~~IA~~~~~~Rt~~QCr~Rw~n~   59 (344)
                      +.-+--.||.|||..|+...++.|.  ..|..||+.++ +|++.|+.+||+..
T Consensus        29 ~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L   80 (95)
T 1ug2_A           29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             CCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence            3445568999999999999999876  36999999998 89999999999763

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.08  E-value=0.00097  Score=50.69  Aligned_cols=48  Identities=13%  Similarity=0.268  Sum_probs=41.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC--CCccccccccccccCcccccchhhcccC
Q 036087           12 KKGLWSPEEDEKLLKHITAHGH--GSWSSVPKLAGLQRCGKSCRLRWINYLR   61 (344)
Q Consensus        12 kkg~WT~EEDe~L~~lV~kyG~--~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~   61 (344)
                      .--.||.|||..|+..+++-|.  .-|..||+.++  |++.|+.+||...+.
T Consensus        13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Ln--ks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKLD--KNPNQVSERFQQLMK   62 (70)
Confidence            4457999999999999999886  36999999885  999999999987654

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=94.47  E-value=0.012  Score=47.22  Aligned_cols=49  Identities=10%  Similarity=0.217  Sum_probs=41.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccccccc----cccCcccccchhhccc
Q 036087           11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAG----LQRCGKSCRLRWINYL   60 (344)
Q Consensus        11 ~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~----~~Rt~~QCr~Rw~n~L   60 (344)
                      ++...||.||...|.+++++|.- .|..|+.+..    ..|+..+.++||..+.
T Consensus        28 L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            34468999999999999999998 9999998764    2688889999988653

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=92.72  E-value=0.27  Score=36.78  Aligned_cols=48  Identities=17%  Similarity=0.068  Sum_probs=41.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCc---hHHHhhhC--CCCCHHHHHHHHHHHh
Q 036087           64 LRRGSFTEEEEQIIIDVHRILGNR---WAQIAKHL--PGRTDNEVKNYWNSCI  111 (344)
Q Consensus        64 lkkg~WT~EED~~Ll~lv~~~G~k---W~~IAk~l--pgRT~~qcknRW~~~l  111 (344)
                      ..+-.||+|..+..++++.++|..   +..|.+.|  +|.|..+|+.+.+.+.
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999954   78998875  7999999999987654

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=91.38  E-value=0.31  Score=46.76  Aligned_cols=48  Identities=23%  Similarity=0.332  Sum_probs=42.8

Q ss_pred             CCCCCHHHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087           66 RGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~lkk  113 (344)
                      -+.||..+...++.+..+|| ..|..||..|+|+|..+|+..+..+..+
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r  158 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER  158 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            45799999999999999999 5799999999999999998877776655

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=90.80  E-value=0.35  Score=42.89  Aligned_cols=50  Identities=16%  Similarity=0.272  Sum_probs=41.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHhcC---CchHHHhhh--CCCCCHHHHHHHHHHHhhh
Q 036087           64 LRRGSFTEEEEQIIIDVHRILG---NRWAQIAKH--LPGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        64 lkkg~WT~EED~~Ll~lv~~~G---~kW~~IAk~--lpgRT~~qcknRW~~~lkk  113 (344)
                      -....||+.|-..|++++.+||   .+|..|+..  |.+||...++..+..++..
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~   59 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG   59 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            3456899999999999999999   579999875  7899999999877776654

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=90.52  E-value=0.12  Score=48.78  Aligned_cols=28  Identities=43%  Similarity=0.783  Sum_probs=26.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 036087           14 GLWSPEEDEKLLKHITAHGHGSWSSVPK   41 (344)
Q Consensus        14 g~WT~EEDe~L~~lV~kyG~~~W~~IA~   41 (344)
                      ..|+.+||..|+..|.+||.|+|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            4599999999999999999999999985

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=90.19  E-value=0.13  Score=38.48  Aligned_cols=50  Identities=16%  Similarity=0.199  Sum_probs=37.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCC--Cccccccccc-cccCcccccchhhcc
Q 036087           10 KVKKGLWSPEEDEKLLKHITAHGHG--SWSSVPKLAG-LQRCGKSCRLRWINY   59 (344)
Q Consensus        10 ~~kkg~WT~EEDe~L~~lV~kyG~~--~W~~IA~~~~-~~Rt~~QCr~Rw~n~   59 (344)
                      +..+-.||+|..++.+++|++.|..  -+..|.+.|+ .+.|..++..|.+.|
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            4466779999999999999999952  1678888776 256777777665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	344
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-19
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-11
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-18
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	7e-10
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	4e-17
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	4e-13
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	1e-15
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	5e-04
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-15
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	7e-10
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	2e-15
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	1e-06
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	5e-15
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	3e-06
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	6e-14
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	1e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	9e-13
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	9e-08
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	2e-12
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	5e-11
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	8e-09
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	3e-10
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	4e-05
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	6e-09
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	6e-09
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	1e-06

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.6 bits (194), Expect = 1e-19
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63
          + KG W+ EED++L+K +  +G   WS + K     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.0 bits (138), Expect = 1e-11
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 64  LRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIK 112
           L +G +T+EE+Q +I + +  G  RW+ IAKHL GR   + +  W++ + 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.2 bits (185), Expect = 3e-18
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD 63
          K  W+ EEDEKL K +  +G   W  +       R    C+ RW   L P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (124), Expect = 7e-10
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 66  RGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIK 112
           +  +T EE++ +  +    G + W  IA +LP RTD + ++ W   + 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.4 bits (180), Expect = 4e-17
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 13 KGLWSPEEDEKLLKHITAHGHG-----SWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRG 67
          K  ++ EEDE +L  +  +         +  +         G S R R+  YL   L   
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 68 SFTEEEEQIIIDVH 81
             ++  +++ D  
Sbjct: 60 YEVDKFGKLVRDDD 73

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.9 bits (150), Expect = 4e-13
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 6/56 (10%)

Query: 66  RGSFTEEEEQIIIDVHRILGNR------WAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
           + SFT+EE++ I+DV R    R      + +I+ ++P  T N +++ +   + K+L
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 56

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 68.9 bits (168), Expect = 1e-15
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 9/81 (11%)

Query: 16 WSPEEDEKLLKHITAHGHGSWSSVPKLA---GLQRCGKSCRLRWINYLR-----PDLRRG 67
          +S  E E L++ +   G G W  V   A      R     + +W   +      P  RRG
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 68 SFTEEEE-QIIIDVHRILGNR 87
              ++    ++  H     +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 36.2 bits (83), Expect = 5e-04
 Identities = 9/63 (14%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 69  FTEEEEQIIID-VHRILGNRWAQIAKH----LPGRTDNEVKNYWNSCIKKKLMSKGLDPK 123
           F+  E + +++ V  +   RW  +          RT  ++K+ W + +    ++      
Sbjct: 3   FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 124 THI 126
             +
Sbjct: 63  EPV 65

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.2 bits (164), Expect = 2e-15
 Identities = 29/47 (61%), Positives = 39/47 (82%)

Query: 66  RGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIK 112
           + S+TEEE++II   H+ LGNRWA+IAK LPGRTDN +KN+WNS ++
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.7 bits (124), Expect = 7e-10
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR 61
          K  W+ EED  + +     G+        L G  R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPG--RTDNAIKNHWNSTMR 47

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (164), Expect = 2e-15
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 12 KKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQ-RCGKSCRLRWINYLRPDL 64
          KK  W+ EE E +   +  +G G+W+++ K      R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 65  RRGSFTEEEEQIIIDVHRILG-NRWAQIAKH--LPGRTDNEVKNYWNSCIKKKL 115
           ++  +T EE + +    +  G   WA I+K+     RT   +K+ W +  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (162), Expect = 5e-15
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 12 KKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQ-RCGKSCRLRWINYLR 61
          K+  W  EED+ L   +  +G G+WS +        R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 3e-06
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 65  RRGSFTEEEEQIIID-VHRILGNRWAQIAKHLP--GRTDNEVKNYWNSCIK 112
           +R ++  EE++ +   V +     W++I  H     RT   +K+ W +  K
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (155), Expect = 6e-14
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 16 WSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQ 75
          W+ EE E   + +   G   W+ + KL G  R     +     Y +  ++ G   E   Q
Sbjct: 5  WTIEEKELFEQGLAKFGRR-WTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETPNQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 1e-11
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 69  FTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKT 124
           +T EE+++        G RW +I+K +  RT  +VK+Y     K K+   GLD +T
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV-KCGLDKET 59

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (146), Expect = 9e-13
 Identities = 9/48 (18%), Positives = 24/48 (50%)

Query: 66  RGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKK 113
              +T EE+ + +   R  G  +  I+  +  ++  +VKN++ +  ++
Sbjct: 5   NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (110), Expect = 9e-08
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 12 KKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR---PDLRRGS 68
              W+ EE    ++ I  +G   + ++  + G  +     +  ++NY R    D     
Sbjct: 4  CNARWTTEEQLLAVQAIRKYGRD-FQAISDVIG-NKSVVQVKNFFVNYRRRFNIDEVLQE 61

Query: 69 FTEE 72
          +  E
Sbjct: 62 WEAE 65

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (145), Expect = 2e-12
 Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 65  RRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKL 115
               ++E+E++   +        +  IA  L  +T  E   Y+    KK  
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL-TKKNE 65

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (133), Expect = 5e-11
 Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 8  KQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGL--QRCGKSCRLRW 56
          + +  +  W+  + + L   +  +  GS     K+A     +  + C  R+
Sbjct: 7  RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (117), Expect = 8e-09
 Identities = 6/51 (11%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 61  RPDLRRGSFTEEEEQIIIDVHRILG----NRWAQIAKHLPGRTDNEVKNYW 107
           R       +T+ +++++    +       + W +IA+ +P ++  +    +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 3e-10
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 16 WSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY 59
          W+ +E+  LL+ +   G G+W  V       +  + C   ++ Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 4e-05
 Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 68  SFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWN 108
           S+T +EE  +++     G   W  +A  +  +T  E + ++ 
Sbjct: 3   SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 44

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.7 bits (121), Expect = 6e-09
 Identities = 12/79 (15%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 37  SSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNR---WAQIAK 93
            ++PK +    C                +   +T E +++I+ + +  G +   ++ I++
Sbjct: 9   GALPKASEATVCAN-----NSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQ 63

Query: 94  HLPGRTDNEVKNYWNSCIK 112
            L  +T  EV + +   ++
Sbjct: 64  QLGNKTPVEVSHRFRELMQ 82

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 49.5 bits (118), Expect = 6e-09
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 68  SFTEEEEQIIIDVHRILG----NRWAQIAKHLPGRTDNEVKNYWNSCIKK-KLMSKGLDP 122
            ++ +E +       +      +RWA +A+ + GRT  EVK ++   ++  K +  G  P
Sbjct: 3   PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVP 62

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 7/53 (13%), Positives = 20/53 (37%), Gaps = 3/53 (5%)

Query: 16 WSPEEDEKLLKHITAHGHGSWSSVPKLAGL--QRCGKSCRLRWINYLRPDLRR 66
          WS +E++   + +  +   +      +A     R  +  +  +   L  D++ 
Sbjct: 4  WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKY 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	344
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.71
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.71
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.66
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.62
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.6
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.57
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.54
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.53
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.52
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.45
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.44
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.43
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.42
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.41
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.38
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.31
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.3
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.29
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.29
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.23
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.21
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.15
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.13
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.05
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.05
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.93
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.9
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.63
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.12
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.02
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.79
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.57
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.26
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.81
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.47
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.4
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.34
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.25
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.2
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	93.8
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	88.88
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	88.34

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=9.6e-19  Score=125.54  Aligned_cols=52  Identities=42%  Similarity=0.821  Sum_probs=49.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCC
Q 036087           11 VKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD   63 (344)
Q Consensus        11 ~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~   63 (344)
                      ++||+||+|||++|+++|++||.++|..||+.|+ +||+.||++||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            5799999999999999999999889999999998 999999999999999984

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=3.6e-20  Score=146.13  Aligned_cols=70  Identities=20%  Similarity=0.250  Sum_probs=64.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-----CccccccccccccCcccccchhhcccCCCCCCCCCCHHHHHHHHHHHHh
Q 036087           13 KGLWSPEEDEKLLKHITAHGHG-----SWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRI   83 (344)
Q Consensus        13 kg~WT~EEDe~L~~lV~kyG~~-----~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~   83 (344)
                      |+.||+|||++|+++|++||..     +|..||+.|+ |||++|||+||.++|+|.++++.||.+||++|+.....
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~   75 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   75 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhc
Confidence            6899999999999999999974     3999999998 99999999999999999999999999999998866544

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=6.8e-18  Score=119.97  Aligned_cols=50  Identities=34%  Similarity=0.721  Sum_probs=48.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCC
Q 036087           13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPD   63 (344)
Q Consensus        13 kg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~   63 (344)
                      |++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            67899999999999999999889999999998 999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.9e-16  Score=111.26  Aligned_cols=47  Identities=62%  Similarity=1.072  Sum_probs=45.1

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhh
Q 036087           66 RGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIK  112 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lk  112 (344)
                      +++||+|||++|+++|++||++|+.||++|||||+++||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999875

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=3.5e-16  Score=112.01  Aligned_cols=50  Identities=36%  Similarity=0.755  Sum_probs=47.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087           64 LRRGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        64 lkkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~lkk  113 (344)
                      |+||+||+|||++|+++|.+|| ++|..||+.|+|||+.||++||+++|++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            5799999999999999999999 5899999999999999999999998876

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=7.9e-16  Score=120.97  Aligned_cols=67  Identities=27%  Similarity=0.403  Sum_probs=62.3

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCc------hHHHhhhCCCCCHHHHHHHHHHHhhhhhhhCCCCccccccCchhh
Q 036087           66 RGSFTEEEEQIIIDVHRILGNR------WAQIAKHLPGRTDNEVKNYWNSCIKKKLMSKGLDPKTHILMPSHQ  132 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G~k------W~~IAk~lpgRT~~qcknRW~~~lkkkl~~~~~~~~e~~ll~~~q  132 (344)
                      |+.||+|||++|+++|.+||.+      |..||+.|||||++|||+||+++|.+.+.+..|+.+++.++...+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~   73 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDD   73 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHh
Confidence            5799999999999999999964      999999999999999999999999999999999999998886544

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.54  E-value=4.9e-16  Score=121.18  Aligned_cols=73  Identities=25%  Similarity=0.417  Sum_probs=59.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccc---ccccCcccccchhhccc-----CCCCCCCCCCHHHHHHHHHHHHhcCC
Q 036087           15 LWSPEEDEKLLKHITAHGHGSWSSVPKLA---GLQRCGKSCRLRWINYL-----RPDLRRGSFTEEEEQIIIDVHRILGN   86 (344)
Q Consensus        15 ~WT~EEDe~L~~lV~kyG~~~W~~IA~~~---~~~Rt~~QCr~Rw~n~L-----~p~lkkg~WT~EED~~Ll~lv~~~G~   86 (344)
                      +||+|||++|+++|++||.++|..|++.+   ..+||+.||++||+++|     .+..+++.|+++|   |+..|.+++.
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~~   78 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAHA   78 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHHH
Confidence            79999999999999999999999999853   23899999999999998     4677889999877   4444444555


Q ss_pred             chHH
Q 036087           87 RWAQ   90 (344)
Q Consensus        87 kW~~   90 (344)
                      +|++
T Consensus        79 ~wsq   82 (83)
T d2ckxa1          79 YWSQ   82 (83)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6653

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=4.8e-15  Score=104.97  Aligned_cols=48  Identities=27%  Similarity=0.570  Sum_probs=45.5

Q ss_pred             CCCCCHHHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087           66 RGSFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~lkk  113 (344)
                      |+.||+|||++|+++|.+|| ++|..||+.|+|||+.||++||+++|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 5799999999999999999999999876

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8e-16  Score=111.18  Aligned_cols=53  Identities=26%  Similarity=0.458  Sum_probs=48.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccccc--cccccCcccccchhhcccCCCCC
Q 036087           12 KKGLWSPEEDEKLLKHITAHGHGSWSSVPKL--AGLQRCGKSCRLRWINYLRPDLR   65 (344)
Q Consensus        12 kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~--~~~~Rt~~QCr~Rw~n~L~p~lk   65 (344)
                      |+++||+|||++|+++|++||.++|..||+.  ++ +|++.||++||+++++++++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~-~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFV-NRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCS-SCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCC-CcCHHHHHHHHHHHhcCCCC
Confidence            5789999999999999999999899999986  44 89999999999999988764

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.9e-15  Score=105.07  Aligned_cols=50  Identities=26%  Similarity=0.426  Sum_probs=44.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCccccccccc-cccCcccccchhhcccC
Q 036087           12 KKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAG-LQRCGKSCRLRWINYLR   61 (344)
Q Consensus        12 kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~-~~Rt~~QCr~Rw~n~L~   61 (344)
                      ++++||+|||++|+++|++||.++|..||+.++ .+|++.||++||.++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999999999999998643 38999999999998653

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=1e-14  Score=102.21  Aligned_cols=47  Identities=26%  Similarity=0.550  Sum_probs=44.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccC
Q 036087           13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR   61 (344)
Q Consensus        13 kg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~   61 (344)
                      |++||+|||++|+++|++||. +|..||+.|+ +||+.||+.||.++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcC-CCCHHHHHHHHHHHcC
Confidence            579999999999999999998 8999999998 9999999999998764

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=9.5e-15  Score=102.33  Aligned_cols=44  Identities=23%  Similarity=0.652  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcc
Q 036087           15 LWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINY   59 (344)
Q Consensus        15 ~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~   59 (344)
                      .||+|||++|+++|.+||.++|..||+.|+ +||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            599999999999999999989999999999 99999999999876

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.2e-13  Score=99.54  Aligned_cols=51  Identities=24%  Similarity=0.454  Sum_probs=46.4

Q ss_pred             CCCCCCHHHHHHHHHHHHhcC-CchHHHhhh--CCCCCHHHHHHHHHHHhhhhh
Q 036087           65 RRGSFTEEEEQIIIDVHRILG-NRWAQIAKH--LPGRTDNEVKNYWNSCIKKKL  115 (344)
Q Consensus        65 kkg~WT~EED~~Ll~lv~~~G-~kW~~IAk~--lpgRT~~qcknRW~~~lkkkl  115 (344)
                      ++.+||+|||++|+++|.+|| ++|..||+.  +++||+.||++||++++++.+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            478999999999999999999 589999998  569999999999999888754

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.4e-13  Score=98.07  Aligned_cols=48  Identities=27%  Similarity=0.475  Sum_probs=43.7

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCC-chHHHhhhC--CCCCHHHHHHHHHHHhh
Q 036087           65 RRGSFTEEEEQIIIDVHRILGN-RWAQIAKHL--PGRTDNEVKNYWNSCIK  112 (344)
Q Consensus        65 kkg~WT~EED~~Ll~lv~~~G~-kW~~IAk~l--pgRT~~qcknRW~~~lk  112 (344)
                      ++++||+|||++|+++|.+||. +|..||+.+  .+||+.||++||+++.+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            5789999999999999999995 899999985  59999999999998764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.9e-13  Score=100.04  Aligned_cols=53  Identities=28%  Similarity=0.406  Sum_probs=48.7

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhhhhhhC
Q 036087           66 RGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKKKLMSK  118 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkkkl~~~  118 (344)
                      ...||+|||++|++++.+||.+|..||++|++||+.||++||+.++++..+..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~   54 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG   54 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcC
Confidence            35799999999999999999999999999999999999999999998866544

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=8.6e-13  Score=92.16  Aligned_cols=43  Identities=21%  Similarity=0.424  Sum_probs=40.9

Q ss_pred             CCCHHHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHH
Q 036087           68 SFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSC  110 (344)
Q Consensus        68 ~WT~EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~  110 (344)
                      .||.|||++|+++|.+|| ++|..||++|++||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 5799999999999999999999875

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.9e-12  Score=94.50  Aligned_cols=50  Identities=12%  Similarity=0.316  Sum_probs=45.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHhcCC----chHHHhhhCCCCCHHHHHHHHHHH
Q 036087           61 RPDLRRGSFTEEEEQIIIDVHRILGN----RWAQIAKHLPGRTDNEVKNYWNSC  110 (344)
Q Consensus        61 ~p~lkkg~WT~EED~~Ll~lv~~~G~----kW~~IAk~lpgRT~~qcknRW~~~  110 (344)
                      .+...+++||.|||++|++++.+||.    +|.+||+.|||||..||++||+.+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45667889999999999999999995    599999999999999999999764

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.9e-13  Score=97.69  Aligned_cols=52  Identities=12%  Similarity=0.353  Sum_probs=47.6

Q ss_pred             CccCCCCCCCCCHHHHHHHHHHHHHhCCC---CccccccccccccCcccccchhhc
Q 036087            6 CSKQKVKKGLWSPEEDEKLLKHITAHGHG---SWSSVPKLAGLQRCGKSCRLRWIN   58 (344)
Q Consensus         6 ~~Kp~~kkg~WT~EEDe~L~~lV~kyG~~---~W~~IA~~~~~~Rt~~QCr~Rw~n   58 (344)
                      .++++.++++||+|||++|+++|.+||.+   +|..||+.|+ +|++.||+.||+.
T Consensus         5 ~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           5 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             cccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            35688889999999999999999999986   4999999999 9999999999974

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=9e-14  Score=102.82  Aligned_cols=58  Identities=22%  Similarity=0.399  Sum_probs=51.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccCCCCCCCCCCHH
Q 036087           13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSFTEE   72 (344)
Q Consensus        13 kg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p~lkkg~WT~E   72 (344)
                      ..+||+|||++|+++|..||. +|..||+.|+ +||+.||+.||.+++++..+.+.+...
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~   59 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKET   59 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhcc-hHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            357999999999999999996 9999999999 999999999999999887776665543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=8e-12  Score=99.09  Aligned_cols=70  Identities=13%  Similarity=0.165  Sum_probs=63.4

Q ss_pred             ccCcccccchhhcccCCCCCCCCCCHHHHHHHHHHHHhcCCc---hHHHhhhCCCCCHHHHHHHHHHHhhhhh
Q 036087           46 QRCGKSCRLRWINYLRPDLRRGSFTEEEEQIIIDVHRILGNR---WAQIAKHLPGRTDNEVKNYWNSCIKKKL  115 (344)
Q Consensus        46 ~Rt~~QCr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~k---W~~IAk~lpgRT~~qcknRW~~~lkkkl  115 (344)
                      ..+..++..++.+..+...+...||.|||++||+.++++|.+   |..||+.|+||+++|||+||+.+++-.-
T Consensus        13 ~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~   85 (95)
T d1ug2a_          13 KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH   85 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            577778888888888888888999999999999999999977   9999999999999999999999887643

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.21  E-value=1e-11  Score=91.39  Aligned_cols=47  Identities=23%  Similarity=0.501  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHHHhcCC----chHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087           67 GSFTEEEEQIIIDVHRILGN----RWAQIAKHLPGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        67 g~WT~EED~~Ll~lv~~~G~----kW~~IAk~lpgRT~~qcknRW~~~lkk  113 (344)
                      .+||+|||++|++++.+||.    +|.+||.+|||||..||++||+.+++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999995    599999999999999999999776543

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.15  E-value=2.6e-11  Score=93.89  Aligned_cols=49  Identities=20%  Similarity=0.492  Sum_probs=44.5

Q ss_pred             CCCHHHHHHHHHHHHhcCC-chHHHhhh----CCCCCHHHHHHHHHHHhhhhhh
Q 036087           68 SFTEEEEQIIIDVHRILGN-RWAQIAKH----LPGRTDNEVKNYWNSCIKKKLM  116 (344)
Q Consensus        68 ~WT~EED~~Ll~lv~~~G~-kW~~IAk~----lpgRT~~qcknRW~~~lkkkl~  116 (344)
                      +||.|||++|+++|.+||. +|..|++.    +++||+.||++||+++|+....
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~   55 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI   55 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhcc
Confidence            7999999999999999994 89999985    6899999999999999976543

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.13  E-value=4e-12  Score=93.65  Aligned_cols=44  Identities=14%  Similarity=0.376  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---ccccccccccccCcccccchhhc
Q 036087           14 GLWSPEEDEKLLKHITAHGHGS---WSSVPKLAGLQRCGKSCRLRWIN   58 (344)
Q Consensus        14 g~WT~EEDe~L~~lV~kyG~~~---W~~IA~~~~~~Rt~~QCr~Rw~n   58 (344)
                      .+||+|||++|+++|++||.+.   |.+||..|+ +||+.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            4799999999999999999864   999999999 9999999999954

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=5.8e-11  Score=88.42  Aligned_cols=47  Identities=17%  Similarity=0.167  Sum_probs=43.6

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHh
Q 036087           65 RRGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCI  111 (344)
Q Consensus        65 kkg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~l  111 (344)
                      ...+||+||+++|++++.+||.+|..||++|||||..||+++|+...
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999998643

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=7.9e-11  Score=86.85  Aligned_cols=48  Identities=19%  Similarity=0.394  Sum_probs=44.4

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087           66 RGSFTEEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G~kW~~IAk~lpgRT~~qcknRW~~~lkk  113 (344)
                      ...||++|+++|++++.+||.+|..||++|+|||..||+++|+...++
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            457999999999999999999999999999999999999999986543

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=8.8e-11  Score=87.42  Aligned_cols=51  Identities=16%  Similarity=0.343  Sum_probs=45.8

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhccc
Q 036087            8 KQKVKKGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL   60 (344)
Q Consensus         8 Kp~~kkg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L   60 (344)
                      +++....+||+|||++|++++.+||. +|..||+.|+ +|+..||+.||....
T Consensus        12 ~~~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          12 KDRQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYLTK   62 (68)
T ss_dssp             TSTTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHHHTT-TSCHHHHHHHHHHHT
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            45566788999999999999999997 9999999998 999999999997643

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.7e-10  Score=85.09  Aligned_cols=47  Identities=19%  Similarity=0.432  Sum_probs=43.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccccccccccCcccccchhhcccC
Q 036087           13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYLR   61 (344)
Q Consensus        13 kg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~   61 (344)
                      ..+||++||++|.+++.+||. +|..||+.|+ +|+..||+.||.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-hHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            356999999999999999997 8999999999 9999999999988653

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=3.5e-09  Score=83.66  Aligned_cols=50  Identities=20%  Similarity=0.335  Sum_probs=44.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCC--ccccccccccccCcccccchhhcc
Q 036087            9 QKVKKGLWSPEEDEKLLKHITAHGHGS--WSSVPKLAGLQRCGKSCRLRWINY   59 (344)
Q Consensus         9 p~~kkg~WT~EEDe~L~~lV~kyG~~~--W~~IA~~~~~~Rt~~QCr~Rw~n~   59 (344)
                      +..+...||.|||+.|++.++++|...  |..||+.|+ +|++.|||.||...
T Consensus        29 ~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~L   80 (95)
T d1ug2a_          29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             CCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            455678899999999999999999733  999999998 99999999999764

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.5e-06  Score=62.87  Aligned_cols=46  Identities=24%  Similarity=0.346  Sum_probs=41.0

Q ss_pred             CCCCHHHHHHHHHHHHhcC----CchHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087           67 GSFTEEEEQIIIDVHRILG----NRWAQIAKHLPGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        67 g~WT~EED~~Ll~lv~~~G----~kW~~IAk~lpgRT~~qcknRW~~~lkk  113 (344)
                      +.||.+|+.+|.+++.+|.    .+|.+||..+ |||..+|..|+..+...
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e~   51 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   51 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHHh
Confidence            4799999999999999996    5799999999 99999999999765443

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=5.1e-06  Score=59.24  Aligned_cols=45  Identities=13%  Similarity=0.292  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHHHHHHHhcCCchHHHhhh-CCCCCHHHHHHHHHHHh
Q 036087           67 GSFTEEEEQIIIDVHRILGNRWAQIAKH-LPGRTDNEVKNYWNSCI  111 (344)
Q Consensus        67 g~WT~EED~~Ll~lv~~~G~kW~~IAk~-lpgRT~~qcknRW~~~l  111 (344)
                      ..||+||-.+..+++..||.+|..|++. +|+||..+|.+.|+...
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~K   47 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWK   47 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence            3799999999999999999999999986 69999999999987533

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=1.7e-06  Score=62.43  Aligned_cols=44  Identities=16%  Similarity=0.341  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---CccccccccccccCcccccchhhcc
Q 036087           14 GLWSPEEDEKLLKHITAHGHG---SWSSVPKLAGLQRCGKSCRLRWINY   59 (344)
Q Consensus        14 g~WT~EEDe~L~~lV~kyG~~---~W~~IA~~~~~~Rt~~QCr~Rw~n~   59 (344)
                      +.||.+|+.+|.+++.+|+.+   .|.+||..+|  |+..+|..||+..
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence            579999999999999999754   5999999996  9999999999754

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=9.6e-06  Score=57.78  Aligned_cols=43  Identities=12%  Similarity=0.132  Sum_probs=39.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccc-cccccCcccccchhhcc
Q 036087           15 LWSPEEDEKLLKHITAHGHGSWSSVPKL-AGLQRCGKSCRLRWINY   59 (344)
Q Consensus        15 ~WT~EEDe~L~~lV~kyG~~~W~~IA~~-~~~~Rt~~QCr~Rw~n~   59 (344)
                      .||+||-+++.+++..||. +|..|++. ++ +|+..||...|...
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~-~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            6999999999999999998 99999985 56 99999999988653

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.26  E-value=0.00036  Score=47.10  Aligned_cols=46  Identities=26%  Similarity=0.500  Sum_probs=40.8

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCchHHHhhhC---CCCCHHHHHHHHHHHh
Q 036087           66 RGSFTEEEEQIIIDVHRILGNRWAQIAKHL---PGRTDNEVKNYWNSCI  111 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G~kW~~IAk~l---pgRT~~qcknRW~~~l  111 (344)
                      +..||+||-.-|+..|+.+|+.|..|--.+   +||+...+..+|+.++
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            347999999999999999999999997665   8999999999998653

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00095  Score=47.64  Aligned_cols=47  Identities=19%  Similarity=0.369  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHHHHHhcC--------Cc-hHHHhh-hCCCCCHHHHHHHHHHHhh
Q 036087           66 RGSFTEEEEQIIIDVHRILG--------NR-WAQIAK-HLPGRTDNEVKNYWNSCIK  112 (344)
Q Consensus        66 kg~WT~EED~~Ll~lv~~~G--------~k-W~~IAk-~lpgRT~~qcknRW~~~lk  112 (344)
                      +.+||.+||+.|++.|.++.        +. |...++ .++.+|-.+.|+||...|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            56899999999999998873        22 999996 6799999999999987664

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.0006  Score=48.72  Aligned_cols=48  Identities=19%  Similarity=0.345  Sum_probs=39.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC--------Ccccccc-ccccccCcccccchhhcccC
Q 036087           13 KGLWSPEEDEKLLKHITAHGHG--------SWSSVPK-LAGLQRCGKSCRLRWINYLR   61 (344)
Q Consensus        13 kg~WT~EEDe~L~~lV~kyG~~--------~W~~IA~-~~~~~Rt~~QCr~Rw~n~L~   61 (344)
                      |.+||.|||+.|+++|.++...        =|..+++ .++ .+|-.+-|+||.++|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            5689999999999999998432        2988885 455 8999999999998874

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.40  E-value=0.0007  Score=49.13  Aligned_cols=50  Identities=16%  Similarity=0.213  Sum_probs=38.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCc--cccccccc-cccCcccccchhhcc
Q 036087           10 KVKKGLWSPEEDEKLLKHITAHGHGSW--SSVPKLAG-LQRCGKSCRLRWINY   59 (344)
Q Consensus        10 ~~kkg~WT~EEDe~L~~lV~kyG~~~W--~~IA~~~~-~~Rt~~QCr~Rw~n~   59 (344)
                      +..+-.||+||.++.+++|+.+|...|  ..|.+.|+ .++|..||+.|.+.|
T Consensus         4 kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            345667999999999999999998444  46777664 277888998776554

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.34  E-value=0.0037  Score=45.18  Aligned_cols=47  Identities=17%  Similarity=0.101  Sum_probs=39.6

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCch---HHHhhh--CCCCCHHHHHHHHHHHh
Q 036087           65 RRGSFTEEEEQIIIDVHRILGNRW---AQIAKH--LPGRTDNEVKNYWNSCI  111 (344)
Q Consensus        65 kkg~WT~EED~~Ll~lv~~~G~kW---~~IAk~--lpgRT~~qcknRW~~~l  111 (344)
                      .+-.||+||.++.++++..+|..|   ..|...  ++|+|..+|+.+.+.+.
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999877   466665  59999999999887653

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0063  Score=44.49  Aligned_cols=52  Identities=23%  Similarity=0.434  Sum_probs=43.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC---CCccccccccccccCcccccchhhcccCC
Q 036087           10 KVKKGLWSPEEDEKLLKHITAHGH---GSWSSVPKLAGLQRCGKSCRLRWINYLRP   62 (344)
Q Consensus        10 ~~kkg~WT~EEDe~L~~lV~kyG~---~~W~~IA~~~~~~Rt~~QCr~Rw~n~L~p   62 (344)
                      ....+.|+++|-++|-.++.-...   +-|..||..+| .|++..|...|...+.-
T Consensus         5 ~t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           5 SSGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             CCSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             cCcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCccc
Confidence            344678999999999999987644   45999999999 99999999999876653

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.024  Score=41.27  Aligned_cols=49  Identities=16%  Similarity=0.259  Sum_probs=42.6

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCc----hHHHhhhCCCCCHHHHHHHHHHHhhh
Q 036087           65 RRGSFTEEEEQIIIDVHRILGNR----WAQIAKHLPGRTDNEVKNYWNSCIKK  113 (344)
Q Consensus        65 kkg~WT~EED~~Ll~lv~~~G~k----W~~IAk~lpgRT~~qcknRW~~~lkk  113 (344)
                      ..+.|+++|-.+|-.++..+...    |..||..+..||+..|..+|..-++.
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccc
Confidence            34689999999999999988743    99999999999999999999876544

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.80  E-value=0.0097  Score=39.90  Aligned_cols=45  Identities=16%  Similarity=0.214  Sum_probs=36.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCccccccccc--cccCcccccchhhc
Q 036087           13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAG--LQRCGKSCRLRWIN   58 (344)
Q Consensus        13 kg~WT~EEDe~L~~lV~kyG~~~W~~IA~~~~--~~Rt~~QCr~Rw~n   58 (344)
                      |..||.||-.-|...|+++|. .|+.|-=.++  .||+......+|..
T Consensus         1 Rknft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHHh
Confidence            357999999999999999998 9999975443  47888777777654

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.88  E-value=0.58  Score=31.88  Aligned_cols=45  Identities=24%  Similarity=0.366  Sum_probs=39.1

Q ss_pred             CCCHHHHHHHHHHHHhcC-CchHHHhhhCCCCCHHHHHHHHHHHhh
Q 036087           68 SFTEEEEQIIIDVHRILG-NRWAQIAKHLPGRTDNEVKNYWNSCIK  112 (344)
Q Consensus        68 ~WT~EED~~Ll~lv~~~G-~kW~~IAk~lpgRT~~qcknRW~~~lk  112 (344)
                      .|+.-|=..++.+..+|| ..-..||..+.|+|..+|+......-+
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw~   46 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE   46 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            499999999999999999 579999999999999999876554433

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.34  E-value=0.35  Score=38.83  Aligned_cols=53  Identities=19%  Similarity=0.335  Sum_probs=42.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcC-Cc---hHHHhhh------------CCCCCHHHHHHHHHHHhhhhh
Q 036087           63 DLRRGSFTEEEEQIIIDVHRILG-NR---WAQIAKH------------LPGRTDNEVKNYWNSCIKKKL  115 (344)
Q Consensus        63 ~lkkg~WT~EED~~Ll~lv~~~G-~k---W~~IAk~------------lpgRT~~qcknRW~~~lkkkl  115 (344)
                      ..++..+|.|||.-|+-.+.+|| .+   |..|-..            +..||+..+..|...+++--.
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~  114 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIE  114 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHH
Confidence            34555799999999999999999 44   9887532            257999999999999887643