Citrus Sinensis ID: 036096

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440
MAETQKRKEAAPENEKALNDWLPITKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKKLHFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRRFSLSWITNWFCIIVGVALMILAPIGGLRALILEAKSFKFYS
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
cccccccHcccccHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccEEEEEHHHHHHHHHHHEEEEEHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEHcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
maetqkrkeaapenekalndwlpitksrnakWWYSAFHNVTAMVGAGvlglpyamseigwgpGIAVIVLSWIITLYTLWQMVEMhemvpgkrfdRYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTggqclkkfhdtvcpsckdiRLTYFIMIFASVHFVLshlpsfnsVAVVSLAAAVMSISYSVIAWVACLhkgalpnvdyglraskttgNVFNFFSALGDVAFAFAGHNVVLEIQasipstpekpskkpmwkGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKKLHFKPTMILRFLTRTIYVGFTMFIAMtfpffggllsffgglafapttyyipCIIWLaiykprrfslswITNWFCIIVGVALMILAPIGGLRALILEAKSFKFYS
maetqkrkeaapenekalndwlpitKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASipstpekpskkpMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKKLHFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRRFSLSWITNWFCIIVGVALMILAPIGGLRALILEAKSFKFYS
MAETQKRKEAAPENEKALNDWLPITKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNsvavvslaaavmsisYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKKLHFKPTMILRFLTRTIYVGFTMFIAMTfpffggllsffgglafapTTYYIPCIIWLAIYKPRRFSLSWITNWFCIIVGVALMILAPIGGLRALILEAKSFKFYS
*****************LNDWLPITKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQA*************MWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKKLHFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRRFSLSWITNWFCIIVGVALMILAPIGGLRALILEAKSFKF**
*****************************AKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPE*PSKKPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKKLHFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRRFSLSWITNWFCIIVGVALMILAPIGGLRALILEAKSFKFYS
***************KALNDWLPITKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASI**********PMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKKLHFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRRFSLSWITNWFCIIVGVALMILAPIGGLRALILEAKSFKFYS
******************NDWLPITKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKKLHFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRRFSLSWITNWFCIIVGVALMILAPIGGLRALILEAKSFKFYS
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAETQKRKEAAPENEKALNDWLPITKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKKLHFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRRFSLSWITNWFCIIVGVALMILAPIGGLRALILEAKSFKFYS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query440 2.2.26 [Sep-21-2011]
Q9FKS8446 Lysine histidine transpor yes no 0.995 0.982 0.732 0.0
Q9LRB5441 Lysine histidine transpor no no 0.984 0.981 0.722 0.0
Q9SR44441 Lysine histidine transpor no no 0.995 0.993 0.724 0.0
Q9C733453 Lysine histidine transpor no no 0.972 0.944 0.705 0.0
O22719451 Lysine histidine transpor no no 0.963 0.940 0.631 1e-163
Q9SS86455 Lysine histidine transpor no no 0.965 0.934 0.639 1e-161
Q9C6M2440 Lysine histidine transpor no no 0.970 0.970 0.592 1e-147
Q9C9J0448 Lysine histidine transpor no no 0.993 0.975 0.581 1e-141
Q9SX98519 Lysine histidine transpor no no 0.952 0.807 0.385 1e-78
Q84WE9478 Lysine histidine transpor no no 0.927 0.853 0.285 5e-51
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/438 (73%), Positives = 381/438 (86%)

Query: 3   ETQKRKEAAPENEKALNDWLPITKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGP 62
           + Q  ++ A   +K + DWLPIT SRNAKWWYSAFHNVTAMVGAGVLGLPYAMS++GWGP
Sbjct: 9   DHQDDEKLAAARQKEIEDWLPITSSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGP 68

Query: 63  GIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGLWIIVPQQLLVEV 122
           GIAV+VLSW+ITLYTLWQMVEMHEMVPGKRFDRY+ELGQHAFGEKLGL+I+VPQQL+VE+
Sbjct: 69  GIAVLVLSWVITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEI 128

Query: 123 GVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAA 182
           GV I+YM+TGG+ LKKFH+ VC  CK I+LTYFIMIFASVHFVLSHLP+FNS++ VSLAA
Sbjct: 129 GVCIVYMVTGGKSLKKFHELVCDDCKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLAA 188

Query: 183 AVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEI 242
           AVMS+SYS IAW +   KG   +V YG +A  T G VFNFFS LGDVAFA+AGHNVVLEI
Sbjct: 189 AVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLEI 248

Query: 243 QASIPSTPEKPSKKPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRWL 302
           QA+IPSTPEKPSK PMW+GV++AY++VA CYFPVA+VGY+ FGN VEDN+LMSL+KP WL
Sbjct: 249 QATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKPAWL 308

Query: 303 IAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKKLHFKPTMILRFLTRTIYVGFTMFIAM 362
           IA AN+FVV+HVIGSYQ+YAMPVFDM+E  LVKKL+F+PT  LRF  R  YV  TMF+ M
Sbjct: 309 IATANIFVVIHVIGSYQIYAMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYVAATMFVGM 368

Query: 363 TFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRRFSLSWITNWFCIIVGVALMILAP 422
           TFPFFGGLL+FFGG AFAPTTY++PC+IWLAIYKP+++SLSW  NW CI+ G+ LM+L+P
Sbjct: 369 TFPFFGGLLAFFGGFAFAPTTYFLPCVIWLAIYKPKKYSLSWWANWVCIVFGLFLMVLSP 428

Query: 423 IGGLRALILEAKSFKFYS 440
           IGGLR ++++AK +KFYS
Sbjct: 429 IGGLRTIVIQAKGYKFYS 446
Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1 Back     alignment and function description
>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description
>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2 Back     alignment and function description
>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2 Back     alignment and function description
>sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1 Back     alignment and function description
>sp|Q84WE9|LHTL7_ARATH Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query440
255540337440 amino acid transporter, putative [Ricinu 1.0 1.0 0.770 0.0
356574036450 PREDICTED: lysine histidine transporter 0.970 0.948 0.756 0.0
30693663446 Lysine histidine transporter 1 [Arabidop 0.995 0.982 0.732 0.0
242078057460 hypothetical protein SORBIDRAFT_07g00225 0.981 0.939 0.743 0.0
30693666445 Lysine histidine transporter 1 [Arabidop 0.995 0.984 0.730 0.0
224102333439 lysine/histidine transporter [Populus tr 0.997 1.0 0.715 0.0
297805586445 hypothetical protein ARALYDRAFT_916150 [ 0.995 0.984 0.730 0.0
225452181442 PREDICTED: lysine histidine transporter 0.970 0.966 0.765 0.0
224133870423 lysine/histidine transporter [Populus tr 0.961 1.0 0.775 0.0
297738354471 unnamed protein product [Vitis vinifera] 0.993 0.927 0.756 0.0
>gi|255540337|ref|XP_002511233.1| amino acid transporter, putative [Ricinus communis] gi|223550348|gb|EEF51835.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/440 (77%), Positives = 387/440 (87%)

Query: 1   MAETQKRKEAAPENEKALNDWLPITKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGW 60
           MAETQ  K A+ ++ KALNDWLPITKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMS++GW
Sbjct: 1   MAETQLEKSASTQHVKALNDWLPITKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGW 60

Query: 61  GPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGLWIIVPQQLLV 120
           GPG AV+VLSW+ITLYTLWQMVEMHE   GKR DRY+ELGQHAFGEKLGLW++VPQQL+V
Sbjct: 61  GPGAAVMVLSWLITLYTLWQMVEMHETKEGKRLDRYHELGQHAFGEKLGLWVVVPQQLMV 120

Query: 121 EVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSL 180
           EVGV+I+YM+TGG+ LKKF DTV P+  DI+ TYFI++F  VH VLSHLPSFNS+  VSL
Sbjct: 121 EVGVNIVYMITGGKSLKKFVDTVRPNGPDIKTTYFILMFGCVHLVLSHLPSFNSITGVSL 180

Query: 181 AAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVL 240
           AAA+MS+SYS IAWVA +HKG   +V Y  R S +TG +F+FFSALGDVAFAFAGHNVVL
Sbjct: 181 AAAIMSLSYSTIAWVASVHKGVQHDVQYTPRVSTSTGQMFSFFSALGDVAFAFAGHNVVL 240

Query: 241 EIQASIPSTPEKPSKKPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPR 300
           EIQA+IPSTPEKPSKKPMWKGVV AY++VA CYFPVA  GYW FGN+VEDN+L+SLEKPR
Sbjct: 241 EIQATIPSTPEKPSKKPMWKGVVFAYIVVALCYFPVAFAGYWVFGNKVEDNILISLEKPR 300

Query: 301 WLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKKLHFKPTMILRFLTRTIYVGFTMFI 360
           WL+AAAN+FVVVHVIGSYQ++AMPVFDM+EA LV K++FKPTM+LR +TRT+YV  TMF+
Sbjct: 301 WLVAAANIFVVVHVIGSYQIFAMPVFDMVEACLVLKMNFKPTMMLRIVTRTLYVALTMFL 360

Query: 361 AMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRRFSLSWITNWFCIIVGVALMIL 420
            MTFPFFGGLLSFFGG AFAPTTYY+PCIIWLAI KP+RFSLSW  NW CI VGV LM+L
Sbjct: 361 GMTFPFFGGLLSFFGGFAFAPTTYYLPCIIWLAIRKPKRFSLSWSINWICITVGVILMVL 420

Query: 421 APIGGLRALILEAKSFKFYS 440
           APIG LR LIL+AK FKFYS
Sbjct: 421 APIGALRQLILQAKDFKFYS 440

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356574036|ref|XP_003555159.1| PREDICTED: lysine histidine transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|30693663|ref|NP_851109.1| Lysine histidine transporter 1 [Arabidopsis thaliana] gi|75262627|sp|Q9FKS8.1|LHT1_ARATH RecName: Full=Lysine histidine transporter 1 gi|14194151|gb|AAK56270.1|AF367281_1 AT5g40780/K1B16_3 [Arabidopsis thaliana] gi|10177957|dbj|BAB11340.1| amino acid permease [Arabidopsis thaliana] gi|22137070|gb|AAM91380.1| At5g40780/K1B16_3 [Arabidopsis thaliana] gi|332007210|gb|AED94593.1| Lysine histidine transporter 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|242078057|ref|XP_002443797.1| hypothetical protein SORBIDRAFT_07g002250 [Sorghum bicolor] gi|241940147|gb|EES13292.1| hypothetical protein SORBIDRAFT_07g002250 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|30693666|ref|NP_198894.2| Lysine histidine transporter 1 [Arabidopsis thaliana] gi|332007211|gb|AED94594.1| Lysine histidine transporter 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224102333|ref|XP_002312642.1| lysine/histidine transporter [Populus trichocarpa] gi|222852462|gb|EEE90009.1| lysine/histidine transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297805586|ref|XP_002870677.1| hypothetical protein ARALYDRAFT_916150 [Arabidopsis lyrata subsp. lyrata] gi|297316513|gb|EFH46936.1| hypothetical protein ARALYDRAFT_916150 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|225452181|ref|XP_002265308.1| PREDICTED: lysine histidine transporter 1 [Vitis vinifera] gi|296090261|emb|CBI40080.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224133870|ref|XP_002321681.1| lysine/histidine transporter [Populus trichocarpa] gi|222868677|gb|EEF05808.1| lysine/histidine transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297738354|emb|CBI27555.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query440
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.968 0.965 0.717 8.6e-175
TAIR|locus:2154815446 LHT1 "lysine histidine transpo 0.990 0.977 0.674 6.4e-170
TAIR|locus:2008605441 AT1G67640 "AT1G67640" [Arabido 0.995 0.993 0.665 8.5e-168
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.981 0.979 0.668 4.7e-167
TAIR|locus:2008154453 AT1G48640 [Arabidopsis thalian 0.972 0.944 0.647 4.8e-158
TAIR|locus:2008435451 AT1G61270 [Arabidopsis thalian 0.938 0.915 0.595 1.2e-138
TAIR|locus:2031215440 AT1G25530 [Arabidopsis thalian 0.970 0.970 0.531 1.5e-129
TAIR|locus:2013056448 AT1G71680 [Arabidopsis thalian 0.993 0.975 0.533 3.2e-129
TAIR|locus:2015383519 AT1G47670 [Arabidopsis thalian 0.947 0.803 0.366 5.1e-74
TAIR|locus:2199978451 AT1G08230 [Arabidopsis thalian 0.927 0.904 0.290 1.3e-45
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
 Score = 1698 (602.8 bits), Expect = 8.6e-175, P = 8.6e-175
 Identities = 307/428 (71%), Positives = 358/428 (83%)

Query:    15 EKALNDWLPITKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIIT 74
             EKA++DWLPIT SRNAKWWYSAFHNVTAMVGAGVL LPYAMSE+GWGPGIAV++LSWIIT
Sbjct:    14 EKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMSELGWGPGIAVLILSWIIT 73

Query:    75 LYTLWQMVEMHEMVPGKRFDRYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQ 134
             LYTLWQMVEMHEMVPGKRFDRY+ELGQHAFGEKLGLWI+VPQQL+VEVGV+I+YM+TGG+
Sbjct:    74 LYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLWIVVPQQLVVEVGVNIVYMVTGGK 133

Query:   135 CLKKFHDTVCPS--CKDIRLTYFIMIFASVHFVLSHLPSFNXXXXXXXXXXXXXXXYSVI 192
              LKKFHD +C    CK+I+LTYFIMIFASVHFVLS LP+FN               YS I
Sbjct:   134 SLKKFHDVLCEGHGCKNIKLTYFIMIFASVHFVLSQLPNFNSISGVSLAAAVMSLSYSTI 193

Query:   193 AWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEK 252
             AW A + KG + +VDY LRA+ +TG VF FFSALGDVAFA+AGHNVVLEIQA+IPSTPEK
Sbjct:   194 AWGASVDKGKVADVDYHLRATTSTGKVFGFFSALGDVAFAYAGHNVVLEIQATIPSTPEK 253

Query:   253 PSKKPMWKGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRWLIAAANLFVVV 312
             PSKKPMWKGVV+AY++VA CYFPVA+VGYWAFGN V+DN+L++L +P+WLIA AN+ VV+
Sbjct:   254 PSKKPMWKGVVVAYIIVALCYFPVALVGYWAFGNHVDDNILITLSRPKWLIALANMMVVI 313

Query:   313 HVIGSYQVYAMPVFDMLEAFLVKKLHFKPTMILRFLTRTIYVGFTMFIAMTXXXXXXXXX 372
             HVIGSYQ+YAMPVFDM+E  LVKKL F P + LR + RT+YV FTMFIA+T         
Sbjct:   314 HVIGSYQIYAMPVFDMIETVLVKKLRFPPGLTLRLIARTLYVAFTMFIAITFPFFGGLLG 373

Query:   373 XXXXXXXXXTTYYIPCIIWLAIYKPRRFSLSWITNWFCIIVGVALMILAPIGGLRALILE 432
                      TTY++PCI+WLAIYKPRRFSLSW TNW CII+GV LMIL+PIGGLR +I++
Sbjct:   374 FFGGFAFAPTTYFLPCIMWLAIYKPRRFSLSWFTNWICIILGVMLMILSPIGGLRQIIID 433

Query:   433 AKSFKFYS 440
             AK++KFYS
Sbjct:   434 AKTYKFYS 441
GO:0009536 "plastid" evidence=IC
TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015383 AT1G47670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199978 AT1G08230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FKS8LHT1_ARATHNo assigned EC number0.73280.99540.9820yesno
Q9LRB5LHT2_ARATHNo assigned EC number0.72280.98400.9818nono
Q9C733LHTL1_ARATHNo assigned EC number0.70560.97270.9448nono
Q9SR44LHTL2_ARATHNo assigned EC number0.72430.99540.9931nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query440
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 1e-110
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 6e-19
PLN03074473 PLN03074, PLN03074, auxin influx permease; Provisi 9e-16
TIGR00837381 TIGR00837, araaP, aromatic amino acid transport pr 8e-04
pfam03222393 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme 0.001
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  331 bits (850), Expect = e-110
 Identities = 146/412 (35%), Positives = 226/412 (54%), Gaps = 18/412 (4%)

Query: 28  RNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEM 87
                W + F+ + A++GAGVL LPYA  ++GW PG+ ++V+  +I+LYTL  +V+  + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 88  VP---GKRFDRYYELGQHAFGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVC 144
           V    GKR   Y +LG   FG K G  +I+   L+   GV I Y++  G  L    D+  
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPK-GKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFF 119

Query: 145 PSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAVMSISYSVIAWVACLHKGALP 204
            +C  I L YFI+IF  +   LS +P+ ++++++SL AAV S+ Y VI  ++    G L 
Sbjct: 120 DTC-HISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSL-YIVILVLSVAELGVLT 177

Query: 205 NVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVI 264
               G   +KT   +   F A+G + FAF GH V+L IQ ++ S P K   K M K ++ 
Sbjct: 178 AQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKS-PSK--FKAMTKVLLT 234

Query: 265 AYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMP 324
           A ++V   Y  V +VGY AFGN V+ N+L++L K  WLI  ANL +V+H++ SY + A P
Sbjct: 235 AIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFP 294

Query: 325 VFDMLEAFLVKK----LHFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFA 380
           +  ++E  L +K     H   + +LR + R+  V  T  IA++ PF G  LS  G  + A
Sbjct: 295 IRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGA 354

Query: 381 PTTYYIPCIIWLAIYKPRRFSLSW-----ITNWFCIIVGVALMILAPIGGLR 427
           P T+ +P +  L + K ++ SL       I +  CI++G+ LM     G + 
Sbjct: 355 PLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional Back     alignment and domain information
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein Back     alignment and domain information
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 440
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PLN03074473 auxin influx permease; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.96
PRK10483414 tryptophan permease; Provisional 99.96
PRK09664415 tryptophan permease TnaB; Provisional 99.95
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.95
PRK15132403 tyrosine transporter TyrP; Provisional 99.95
PRK13629443 threonine/serine transporter TdcC; Provisional 99.93
TIGR00814397 stp serine transporter. The HAAAP family includes 99.91
PRK10655438 potE putrescine transporter; Provisional 99.84
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.84
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.83
PRK15049499 L-asparagine permease; Provisional 99.82
PRK10644445 arginine:agmatin antiporter; Provisional 99.82
PRK10249458 phenylalanine transporter; Provisional 99.8
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.8
PRK11387471 S-methylmethionine transporter; Provisional 99.79
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.78
TIGR00909429 2A0306 amino acid transporter. 99.78
PRK11021410 putative transporter; Provisional 99.78
PRK10746461 putative transport protein YifK; Provisional 99.77
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.76
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.76
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.76
PRK10238456 aromatic amino acid transporter; Provisional 99.76
PRK10580457 proY putative proline-specific permease; Provision 99.75
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.75
PRK10836489 lysine transporter; Provisional 99.75
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.74
TIGR00911501 2A0308 L-type amino acid transporter. 99.73
TIGR00913478 2A0310 amino acid permease (yeast). 99.72
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.72
TIGR00930 953 2a30 K-Cl cotransporter. 99.71
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.69
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.68
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.68
COG0531466 PotE Amino acid transporters [Amino acid transport 99.64
COG0833541 LysP Amino acid transporters [Amino acid transport 99.6
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.55
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.55
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.5
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.49
TIGR00910507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.49
PRK15238496 inner membrane transporter YjeM; Provisional 99.47
PF03845320 Spore_permease: Spore germination protein; InterPr 99.4
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 99.29
KOG1289550 consensus Amino acid transporters [Amino acid tran 99.0
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.86
COG3949349 Uncharacterized membrane protein [Function unknown 98.79
PRK11375484 allantoin permease; Provisional 98.67
KOG3832319 consensus Predicted amino acid transporter [Genera 98.64
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.61
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.57
TIGR00813407 sss transporter, SSS family. have different number 98.53
PRK12488549 acetate permease; Provisional 98.51
COG1457442 CodB Purine-cytosine permease and related proteins 98.49
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.43
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.41
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.4
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.33
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 98.29
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 98.26
PRK10484523 putative transporter; Provisional 98.17
PRK15419502 proline:sodium symporter PutP; Provisional 98.17
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.16
PRK09395551 actP acetate permease; Provisional 98.13
PRK11017404 codB cytosine permease; Provisional 98.01
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.89
TIGR00835425 agcS amino acid carrier protein. Members of the AG 97.86
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.7
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 97.56
KOG1288 945 consensus Amino acid transporters [Amino acid tran 97.53
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 97.52
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.26
PF01566358 Nramp: Natural resistance-associated macrophage pr 97.26
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 97.19
PRK00701439 manganese transport protein MntH; Reviewed 97.14
COG4147529 DhlC Predicted symporter [General function predict 97.13
COG0733439 Na+-dependent transporters of the SNF family [Gene 96.91
PRK15015 701 carbon starvation protein A; Provisional 96.51
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 96.15
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 95.93
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 95.91
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 95.62
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 94.89
COG1966 575 CstA Carbon starvation protein, predicted membrane 94.74
PRK15433439 branched-chain amino acid transport system 2 carri 94.38
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 94.18
KOG2466572 consensus Uridine permease/thiamine transporter/al 93.78
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 93.57
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 90.29
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 87.02
PRK15433439 branched-chain amino acid transport system 2 carri 85.46
COG0814415 SdaC Amino acid permeases [Amino acid transport an 83.36
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-55  Score=418.61  Aligned_cols=389  Identities=20%  Similarity=0.295  Sum_probs=343.2

Q ss_pred             ccCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhc---cCCcccccHHHHHHHH
Q 036096           27 SRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEM---VPGKRFDRYYELGQHA  103 (440)
Q Consensus        27 ~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~---~~~~~~~~y~~~~~~~  103 (440)
                      ++..|..++..|+.++++|+|+|++|+||+++|++.|.+..++++.++.||++.+++|...   ..+....+|.+.++.+
T Consensus        44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a  123 (449)
T KOG1304|consen   44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA  123 (449)
T ss_pred             CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence            4568999999999999999999999999999999999999999999999999999998753   2222356777776555


Q ss_pred             ----------hccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcc
Q 036096          104 ----------FGEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFN  173 (440)
Q Consensus       104 ----------~G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~  173 (440)
                                +|| ++|.+++..+.+.++|.|++|+++++++++++.+..  .....+.+.|+.+..+..++++++|+++
T Consensus       124 ~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~--~~~~~s~~~~i~~~~~~~lll~~Ir~Lk  200 (449)
T KOG1304|consen  124 MEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH--SPGVLSVRLYILIQLPPLLLLNLIRNLK  200 (449)
T ss_pred             HcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc--CCCCccHHHHHHHHHHHHHHHHHHHhhH
Confidence                      455 677999999999999999999999999999999832  2345678889999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCC
Q 036096          174 SVAVVSLAAAVMSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKP  253 (440)
Q Consensus       174 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p  253 (440)
                      .+..+|.++.++.++.+.++.++.+....      ..+..+...++.++..++|+.+|||+|+.++.|++++|    |+|
T Consensus       201 ~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~------~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M----k~P  270 (449)
T KOG1304|consen  201 ILSPFSLFANVFILVGLAIIMYYLVQDLP------PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM----KKP  270 (449)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHhccC------CccccccccchhhhHHHHHHHHHHhccceEEEehhhcc----cCh
Confidence            99999999999887767666666554432      11223345568899999999999999999999999999    899


Q ss_pred             CCCCch-hhhhHHHHHHHHHHHhHHhHHHhhcCCCchhHHhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHH
Q 036096          254 SKKPMW-KGVVIAYLLVAFCYFPVAMVGYWAFGNQVEDNVLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAF  332 (440)
Q Consensus       254 ~~~~~~-~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  332 (440)
                      +++.-+ .++..++.+++++|..+|++||++||+++++.++.|+|+ +++...+++++++.+..+||++++|..+.+++.
T Consensus       271 ~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~  349 (449)
T KOG1304|consen  271 QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPG  349 (449)
T ss_pred             hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHh
Confidence            875422 778899999999999999999999999999999999998 999999999999999999999999999999999


Q ss_pred             HhhhcCCCcchhhhhhhHHHHHHHHHHHHhhccchhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCC---CchhHHHHHH
Q 036096          333 LVKKLHFKPTMILRFLTRTIYVGFTMFIAMTFPFFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRR---FSLSWITNWF  409 (440)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~p~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~~---~~~~~~~~~~  409 (440)
                      +.++.+.++++.....+|..+++++..+|..+|+++.+++++|+++++.+.+++|++++++..+++.   .+|+.+.+.+
T Consensus       350 i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~  429 (449)
T KOG1304|consen  350 IRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIV  429 (449)
T ss_pred             HHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHH
Confidence            8888766567788899999999999999999999999999999999999999999999999987655   4688899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 036096          410 CIIVGVALMILAPIGGLRAL  429 (440)
Q Consensus       410 ~~~~g~~~~~~g~~~~i~~i  429 (440)
                      ++++|++.++.|+|.+++|+
T Consensus       430 l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  430 LIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHHHHHHHHHHHhhhhhcC
Confidence            99999999999999999874

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query440
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.86
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.77
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.68
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.87
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.35
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.99
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 91.65
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.86  E-value=8.2e-20  Score=181.72  Aligned_cols=358  Identities=16%  Similarity=0.082  Sum_probs=221.2

Q ss_pred             ccccCCchhhHHHHHhhhhhcchhcchHHHHhhhCchHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccHHHHHHHHh
Q 036096           25 TKSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSEIGWGPGIAVIVLSWIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAF  104 (440)
Q Consensus        25 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~  104 (440)
                      +++|+.+.++..+..+++++|+|++.+|....+.|. .+++..++.+++.......+.|...+.|..+  +..++.++.+
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~   81 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCF   81 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHS
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHc
Confidence            356889999999999999999999999998888885 4777788888888889999999888777654  7788899999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhCCCCCCccchhhHHHHHHHHHHHhcCCCcchhhHHHHHHHH
Q 036096          105 GEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKKFHDTVCPSCKDIRLTYFIMIFASVHFVLSHLPSFNSVAVVSLAAAV  184 (440)
Q Consensus       105 G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~  184 (440)
                      ||++| ++..+..++.......++....++++..+++...   +.+....+ .+..+++.-....++.+....++.+...
T Consensus        82 G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~in~~g~~~~~~~~~~~~~  156 (445)
T 3l1l_A           82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK---DPWVLTIT-CVVVLWIFVLLNIVGPKMITRVQAVATV  156 (445)
T ss_dssp             CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG---SHHHHHHH-HHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc---ccHHHHHH-HHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            99888 7788888887777777777777777766554321   10111111 1112222223334567777777766665


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCccccCCCCccccchhhHHHHHHHHHHhccCCcchHhhhhhCCCCCCCCCCCCchhhhhH
Q 036096          185 MSISYSVIAWVACLHKGALPNVDYGLRASKTTGNVFNFFSALGDVAFAFAGHNVVLEIQASIPSTPEKPSKKPMWKGVVI  264 (440)
Q Consensus       185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~  264 (440)
                      ..+..+++..+......+.++....++ .....++.++..++...+|+|.|++......+|+    |||+| +.+|++..
T Consensus       157 ~~i~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r-~ip~a~~~  230 (445)
T 3l1l_A          157 LALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIATIG  230 (445)
T ss_dssp             HHHHHHHHHHHTTSTTCCCCCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhChhhcccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCccc-cccHHHHH
Confidence            544433333333222222222111111 1112235678899999999999999999999999    99976 78999999


Q ss_pred             HHHHHHHHHHhHHhHHHhhcCCCch----hH---HhhCCCCchHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhhc
Q 036096          265 AYLLVAFCYFPVAMVGYWAFGNQVE----DN---VLMSLEKPRWLIAAANLFVVVHVIGSYQVYAMPVFDMLEAFLVKKL  337 (440)
Q Consensus       265 s~~~~~~~y~~~g~~gy~~fg~~~~----~~---il~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  337 (440)
                      +...+.++|.+..+......+.+..    ++   +..... .++...+..+...++.+.+.....+...+.....-+++.
T Consensus       231 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~  309 (445)
T 3l1l_A          231 GVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGL  309 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999998877766654321    11   111111 133444555666666666655555555555444433321


Q ss_pred             ------CC-CcchhhhhhhHHHHHHHHHHHHhhcc----chhHHHHHhhhhhhhhHHHHHHHHHHHHHhcCCC
Q 036096          338 ------HF-KPTMILRFLTRTIYVGFTMFIAMTFP----FFGGLLSFFGGLAFAPTTYYIPCIIWLAIYKPRR  399 (440)
Q Consensus       338 ------~~-~~~~~~~~~~~~~~~~~~~~ia~~~p----~~~~i~~l~G~~~~~~l~~ilP~l~~~~~~~~~~  399 (440)
                            +. +++.+.+.+.....+.....+....|    .++.+.++.+  ....+.|.++++.+++.+++++
T Consensus       310 lP~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~  380 (445)
T 3l1l_A          310 FPPIFARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF  380 (445)
T ss_dssp             SCGGGGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred             CcHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence                  01 11222333222222222222211122    3555555544  3457889999999999887654
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query440
d2a65a1509 Na(+):neurotransmitter symporter homologue LeuT {A 94.82
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.82  E-value=1.6  Score=40.77  Aligned_cols=105  Identities=17%  Similarity=0.136  Sum_probs=53.6

Q ss_pred             CchhhHHHHHhhhhhcchh-cchHHHHhhhCchHHHHHHHHH----HHHHHHHHHHHHHhhhccCCcccccHHHHHHHHh
Q 036096           30 AKWWYSAFHNVTAMVGAGV-LGLPYAMSEIGWGPGIAVIVLS----WIITLYTLWQMVEMHEMVPGKRFDRYYELGQHAF  104 (440)
Q Consensus        30 ~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~~g~i~l~~~----~~~~~~s~~~l~~~~~~~~~~~~~~y~~~~~~~~  104 (440)
                      .|..+-++..++..+|-|- --.|+-..+-|....++..++.    ++=..+-=..+.+..++.+   ...+..+.....
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g~---i~~~~~i~~~~~   81 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQG---HGTTPAIFYLLW   81 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTT---CCSHHHHHHHHS
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc---ccHHHHHHHHhc
Confidence            3557889999999999995 5589987665533333333333    3322222233344333222   336666666554


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 036096          105 GEKLGLWIIVPQQLLVEVGVDIMYMLTGGQCLKK  138 (440)
Q Consensus       105 G~~~g~~~~~~~~~~~~~~~~~~y~i~~~~~~~~  138 (440)
                      +++.. ..+.+...+..+..++-|.+..+..+..
T Consensus        82 ~~~~~-~giG~~~~~~~~~i~~yy~vi~~w~l~Y  114 (509)
T d2a65a1          82 RNRFA-KILGVFGLWIPLVVAIYYVYIESWTLGF  114 (509)
T ss_dssp             CSHHH-HHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcch-hHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43222 1223333334444444455555544433