Citrus Sinensis ID: 036097

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-
Protein Sequence
MADVRSMKPKIDNADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLEMRAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTIEYGRAFRFCFQILYKKDEV
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEEEEEEEHHHHHHHHHcccccEEEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccccccccccccccEEEEEEEEEEEccccccccccccEEEEEEEEEEccEEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEccccccccccccccEEEEEEEEEEEcccHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEcccccEEcccccccccEEEEEEEEccccccHHHHHHHHHHccccccEEEEEEcccccEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEEEccccccEEccccEEEccEEEEEEEEcEEEEccccccccccHHHcEEEEEEEEcccHHHHHHHHcccHHHEEEEEEcccccEEEEEEccccEEEEEEccccccEEEEEcccccccEEEcccccccEEccccHHHHccccEEcccccccccccccHHHHHHHcHccEEEEEcccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccccccEEEEcccccHHHHHHHEEEEEEccccEEEEcHHHcccccccccccEEEEEEEEEEcHHHHHHHHHHHHHHccccccEEEEEccccEEEEEEEEEccccc
Coil and Loop (DISEMBL)
madvrsmkpkidnadrisalpePLLQHIMSFLPSKDAVRTRLLSKIWEKAwctfpvlnfdEDLFERELLEMRAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRfkasflddseladRCVCYAIESTVKELELHtilrgdrlyhlpqmvvcSETVNVLDLFGCillefpgrnsvklpslrKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNinalnghsitvvsplpsgkinevsCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFelqnikisspslkrleifkCTKLAAVEietpnlskckynggvvpfssSTALKLLETDlnlytinfdpqWYVKFIELIAKFHQWSKVLNLLSecgesvivpkelrqilppplsgvkhlnfsisipfKKFAIAQVVDGllwmsphvdtVTIEYGRAFRFCFQILYKKDEV
Flexible Loop (DISEMBL)
madvrsmkpkidnadrisALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLEMRAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKAsflddselaDRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEfpgrnsvklpsLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKsiklfgrsklRDIKIKGGREAEEvninalnghsitvVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQnikisspslkrleIFKCTKLAAVEIetpnlskckyngGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTIEYGRAFRFCFQILYKKDEV
Low Complexity Region (SEG)
MADVRSMKPKIDNADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVlnfdedlferelleMRAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTIEYGRAFRFCFQILYKKDEV
Disordered region (IsUnstruct)
**********************PLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLEMRAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTIEYGRAFRFCFQILYK****
Disordered Region (DISOPRED)
*******************LPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLEMRAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTIEYGRAFRFCFQILYKKD**
Disordered Region (DISEMBL)
*********KIDNADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLEMRAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTIEYGRAFRFCFQILYKKDEV
Disordered Region (DISPRO)
**************DRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLE*RAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTIEYGRAFRFCFQILYKKD**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADVRSMKPKIDNADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLEMRAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTIEYGRAFRFCFQILYKKDEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	481	2.2.26 [Sep-21-2011]
Q9LV26	456	Putative F-box/LRR-repeat	yes	no	0.496	0.524	0.258	5e-15
Q9FX89	385	Putative F-box protein At	no	no	0.530	0.662	0.270	1e-14
Q84W80	481	F-box/LRR-repeat protein	no	no	0.711	0.711	0.232	4e-14
Q3EAE5	441	Putative F-box/FBD/LRR-re	no	no	0.384	0.419	0.320	2e-13
Q6NKX3	448	F-box/FBD/LRR-repeat prot	no	no	0.690	0.741	0.263	2e-13
Q9FNI8	466	FBD-associated F-box prot	no	no	0.370	0.381	0.294	4e-13
Q3EA38	427	Putative F-box/FBD/LRR-re	no	no	0.365	0.412	0.313	1e-12
Q9SV82	409	FBD-associated F-box prot	no	no	0.365	0.430	0.295	5e-12
Q9LYZ2	469	Putative F-box/LRR-repeat	no	no	0.401	0.411	0.260	7e-12
Q9LSJ3	465	Putative F-box/LRR-repeat	no	no	0.422	0.436	0.235	8e-12

>sp|Q9LV26|FBL45_ARATH Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=4 SV=2

 Score = 82.8 bits (203), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 124/279 (44%), Gaps = 40/279 (14%)

Query: 14  ADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLEMRA 73
            D IS+LP+ +LQHI+SF+P+K A+ T LLSK W   WC  P L+F++   E   ++   
Sbjct: 30  VDSISSLPDVILQHILSFIPTKLAITTSLLSKRWRHVWCDTPSLSFNDYRLEAPFIDETL 89

Query: 74  ARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYA 133
            R    K               +  H H                S +++    +  + +A
Sbjct: 90  TRYTASKM--------------MRFHLH---------------TSLINNVPHLESWIKFA 120

Query: 134 IESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLR 193
           +   V  L L    +    +  P     + ++  L     ++L+F   +++    L+KL 
Sbjct: 121 MSRNVDHLSLDLWNQVANKFKFPDFFHINSSLKQL----TVVLDF--SDTMIAICLKKLY 174

Query: 194 LAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGG---REAEEV 250
           L+    SD+ + N++ GCP++E L  + C GL+ + L    +LR ++I       E   +
Sbjct: 175 LSTCLLSDESMANILFGCPILESLTLDHCGGLRVLDLSKSLRLRTLEINCNIWVPELTAM 234

Query: 251 NINALNGHSITVV-SPLPSGKINEVSCKNLKSLFLCITS 288
            I A + H + +  S LP   ++  S K  K L +CI S
Sbjct: 235 QIVAPHTHCLRLRNSKLPCSLVDVSSLKEAK-LNICIDS 272

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FX89|FB50_ARATH Putative F-box protein At1g49610 OS=Arabidopsis thaliana GN=At1g49610 PE=4 SV=2

 Score = 81.3 bits (199), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 141/337 (41%), Gaps = 82/337 (24%)

Query: 2   ADVRSMKPKIDNADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDE 61
           A VR +K  +++ D IS+LP+ +LQ  +S +P+K A+RT +LSK W   W   P L+FD+
Sbjct: 13  ASVRVLKHCLEDVDSISSLPDVILQENLSLIPTKFAIRTSVLSKRWRHVWSETPSLDFDD 72

Query: 62  ------DLFERELLEMRAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRF 115
                 D  ++ L   RA +          G  L Y                        
Sbjct: 73  CYKLDVDFIDKTLALYRARKIMTFDLWITNGINLPY------------------------ 108

Query: 116 KASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCIL 175
                      D  + +A+   V+ L L       RLY +P  +  + +V  L + G   
Sbjct: 109 ----------IDGWIKFAMSRNVENLFLSFDF---RLYDVPDYLYINSSVKQL-VLGTES 154

Query: 176 LEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSK 235
            E   R SV   SL KL L     SD+ I  +++GCP+IE L   FC+ L  + L     
Sbjct: 155 SELNPRCSVSWSSLTKLSL----FSDESIAKILSGCPIIESLTLHFCDQLMVLDLTKSPS 210

Query: 236 LRDIKIKGG-REAEEVNINALNGHSITV-----------VSPLPSGKINEVSC--KNLKS 281
           L+ ++I G    +   +I A + HS+T+           +S L   K++   C  K +K+
Sbjct: 211 LKILEIHGSIWGSGPKHIVAPHIHSLTLKTSQFFIYFCDISSLTEAKVDICFCSLKEIKA 270

Query: 282 LFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNI 318
            FL  T               VL+CL     ++LQN+
Sbjct: 271 NFLLDT---------------VLKCL-----YKLQNV 287

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W80|FBL42_ARATH F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2

 Score = 79.7 bits (195), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 174/404 (43%), Gaps = 62/404 (15%)

Query: 14  ADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLEMRA 73
            D IS LP+ +LQ I+S+LP++ A++T +LS+ W   W     L+F  D           
Sbjct: 36  GDLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSDTWSLSFHRD----------- 84

Query: 74  ARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYA 133
            R D    N    ++L+ ++         CS  + +        S  D     D  + +A
Sbjct: 85  -RPDAPCIN----RILDRYRAPKMMSFRICSCCRAAC------ISRPDTHADIDSWINFA 133

Query: 134 IESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDL-FGCI--LLEFPGRNSVKLPSLR 190
           +   V+ L L+  L  D+ Y +P+ +  + ++  L L FGC    +    + SV   SL+
Sbjct: 134 MSRNVENLSLY--LDEDK-YDIPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTSLK 190

Query: 191 KLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEV 250
            L L     SD+ I  +++GCP++E L+  FC+ LK + L    +L  ++I      E  
Sbjct: 191 NLSLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDLSKSPRLITLEITRRCRMEPT 250

Query: 251 NINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLI 310
            + A +   + +++      + +VS  +   L +   ++VD  L     + +V++ L   
Sbjct: 251 QLVAPHIRCLRLINSEKPCALVDVSSLSQAELDITAYAIVDNKLEADFHQTMVVKMLE-- 308

Query: 311 VCFELQNIKISSPSLKRLEI-------FKCTKLAAVEIET-----------------PNL 346
            C  ++ + + +  LK L +       F   K  A+ +ET                 P+L
Sbjct: 309 KCQNVEKLTLGANFLKMLSLAELRGVSFPKLKAKALILETMISRYVIHGIVKVLQNSPDL 368

Query: 347 SKCKYNGGVVPFSSSTALKLLETDLNLY----TINFDPQWYVKF 386
            K      + P  S+ +  + E  +++Y     +N+DP W  +F
Sbjct: 369 KKL----TIHPMGSAGSYPIPEEHIDIYLDSHGLNWDPSWSSEF 408

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EAE5|FDL24_ARATH Putative F-box/FBD/LRR-repeat protein At4g00315 OS=Arabidopsis thaliana GN=At4g00315 PE=4 SV=1

 Score = 77.8 bits (190), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 24/209 (11%)

Query: 15  DRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLEMRAA 74
           D+ S LP+ LL  ++SFLP+KDAVRT LLS  W+  W   P L +D              
Sbjct: 2   DKTSQLPDELLVKVLSFLPTKDAVRTSLLSMRWKSLWMWLPKLEYD-------------- 47

Query: 75  RGDVQKFNQARGK-LLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYA 133
               + ++ + G+ L  +   +L  H+   +   LS+ KLR+ A      E     V  A
Sbjct: 48  ---FRHYSVSEGQGLARFITLSLLGHKAP-AIESLSL-KLRYGAIGSIKPEDIYLWVSLA 102

Query: 134 I-ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKL 192
           + +S V+EL L      +R   LP+ +   +++ +L L   IL++ P +  V LPSL+ L
Sbjct: 103 VHDSNVRELSLKLCTFAERPTKLPKSLYKCKSIVILKLKDEILVDVPRK--VCLPSLKTL 160

Query: 193 RLAQVRASDQ-VIENLVAGCPLIEDLIFE 220
            L +V  SD+  +  L++ CP++EDL+ E
Sbjct: 161 FLGRVTYSDEDSLHRLLSNCPVLEDLVVE 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NKX3|FDL14_ARATH F-box/FBD/LRR-repeat protein At2g04230 OS=Arabidopsis thaliana GN=At2g04230 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 165/383 (43%), Gaps = 51/383 (13%)

Query: 13  NADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDED---LFERELL 69
           N DRIS LP+ LL  I+S LP+++A+ T +LSK W   W   P L FD +   +F+ + +
Sbjct: 11  NEDRISDLPDALLLQILSSLPTENAIATSVLSKRWRSLWTMLPKLKFDSNFNPVFDDDNI 70

Query: 70  EMRAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRC 129
                  D   F++   K L+  K  +    H    G+              D       
Sbjct: 71  -------DPTMFSENVYKTLSLHKAPVLESLHLSFEGRT-------------DCLHVGIW 110

Query: 130 VCYAIESTVKELELHTILRGDRLYHLPQMVVC-SETVNVLDLFGCILLEFPGRNSVKLPS 188
           +  A    V++L L +  + D+   LP ++   ++++ +L L   I L+FP R  V L S
Sbjct: 111 IATAFARGVRKLVLDSFYQEDQTVTLPSVLFSYNDSLEILKLKCAIDLDFPSR--VCLKS 168

Query: 189 LRKLRLAQVRASD-QVIENLVAGCPLIEDLIFEFCEGLKSIKL------FGRSKLRDIKI 241
           LRKL L QV   D + + NL+ GCP ++DL+                    R  + D++ 
Sbjct: 169 LRKLYLDQVHFKDEESVCNLLCGCPSLQDLVVHRYSNADVATFTIASPSLQRLTIEDLRQ 228

Query: 242 KGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRL 301
           +GG       INA     + +     +G I+  SC   K+L L    + + +    IT  
Sbjct: 229 EGGYGNGSYVINAPGLKYLNI-----NGVIDIESCLIDKALELEEAKISNVS---GITNE 280

Query: 302 VVLECLGLI--VCFELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFS 359
            +LE L     +   L  +++  P+ K  +   C +L   E E  NL         +   
Sbjct: 281 NILESLTSAKRLILHLSPLEVKVPTGKIFDQLGCLELLTHEREWWNLLS-------IMLD 333

Query: 360 SSTALKLLE-TDLNLYTINFDPQ 381
           SS  L++L+ TD+ L+    +P 
Sbjct: 334 SSPKLQILKLTDVYLHDNKTNPD 356

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNI8|FBD32_ARATH FBD-associated F-box protein At5g22730 OS=Arabidopsis thaliana GN=At5g22730 PE=2 SV=2

 Score = 76.6 bits (187), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 29/207 (14%)

Query: 15  DRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLEMRAA 74
           D IS LP+ L+  I+ +LP KD VRT  LS  W+  W   P L+ D + F+    +  A 
Sbjct: 28  DLISKLPDSLITQILLYLPIKDIVRTSSLSSRWKSLWLLIPRLDLDSEEFQ----DYNAF 83

Query: 75  RGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKA-SFLDDSELADRCVCYA 133
            G + KF    G+                   K+ ++KL+  +   ++D     R + + 
Sbjct: 84  VGFMNKFIDFSGE------------------EKICLDKLKLSSRKTVNDLPCVTRWIDFV 125

Query: 134 IESTVKELELHTILRGDRLYHLP-QMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKL 192
           +   +K L++  ++    L  +P  + VC   VN L L   +L +F    +V LP L+ +
Sbjct: 126 VRRKLKHLDVECLVNRKFLEEMPLSLYVCDTLVN-LRLHRVLLGKF---EAVSLPCLKTM 181

Query: 193 RLAQ-VRASDQVIENLVAGCPLIEDLI 218
           RL + V A+D V+E+L++ CP+++DLI
Sbjct: 182 RLEENVYANDVVLESLISSCPVLKDLI 208

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EA38|FDL48_ARATH Putative F-box/FBD/LRR-repeat protein At4g13965 OS=Arabidopsis thaliana GN=At4g13965 PE=4 SV=2

 Score = 75.1 bits (183), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 38/214 (17%)

Query: 11  IDNADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLE 70
           I NADRIS LPE L+  I+S LP++ AV T +LSK W+  W   P LNFD  L +R   E
Sbjct: 10  IVNADRISQLPEALIIQILSLLPTEVAVTTSVLSKQWQFLWKMLPKLNFD-SLDQRH--E 66

Query: 71  MRAARGDVQKFNQARGKLLNYWKQALEA-----HRHHCSTGKLSVEKLRFKASFLDDSEL 125
            +    +V++       LL++    L +     H H C++              ++ ++L
Sbjct: 67  FKTFSKNVKR------ALLSHKAPVLHSLHLIVHLHLCNS--------------MNTAKL 106

Query: 126 ADRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVK 185
                   +   V E++      G R + +P+ +   ET++ L+L   IL++ P   S+ 
Sbjct: 107 IGIAFACNLRKLVLEVD------GGR-FSIPESLYNCETLDTLELKYSILMDVPS--SIC 157

Query: 186 LPSLRKLRLAQVRASD-QVIENLVAGCPLIEDLI 218
           L SLR L L  V   D +   NL++GCP +E+L+
Sbjct: 158 LKSLRTLHLHYVDFKDNESALNLLSGCPNLENLV 191

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV82|FBD40_ARATH FBD-associated F-box protein At4g10400 OS=Arabidopsis thaliana GN=At4g10400 PE=2 SV=2

 Score = 73.2 bits (178), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 100/210 (47%), Gaps = 34/210 (16%)

Query: 15  DRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLEMRAA 74
           DRIS LP+ +L  I+SF+P+K AV T +LSK WE  W     L F               
Sbjct: 2   DRISGLPDEVLVKILSFVPTKVAVSTSILSKRWEFLWMWLTKLKFGS------------- 48

Query: 75  RGDVQKFNQARGKLLN-YWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADR----C 129
               ++++++  K L  +  + L  HR         +E  R     L DS          
Sbjct: 49  ----KRYSESEFKRLQCFLDRNLPLHRAPV------IESFRL---VLSDSHFKPEDIRMW 95

Query: 130 VCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSL 189
           V  A+   ++EL++++   G++   LP  +   +++ +L L G +LL+ P    V LPSL
Sbjct: 96  VVVAVSRYIRELKIYSSHYGEKQNILPSSLYTCKSLVILKLDGGVLLDVP--RMVCLPSL 153

Query: 190 RKLRLAQVRASDQ-VIENLVAGCPLIEDLI 218
           + L L  VR   Q  ++ L+  CP++EDL+
Sbjct: 154 KTLELKGVRYFKQGSLQRLLCNCPVLEDLV 183

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYZ2|FBL80_ARATH Putative F-box/LRR-repeat protein At5g02930 OS=Arabidopsis thaliana GN=At5g02930 PE=4 SV=1

 Score = 72.4 bits (176), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/253 (26%), Positives = 108/253 (42%), Gaps = 60/253 (23%)

Query: 5   RSMKPKID-NADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFD--- 60
           RS    +D   D IS LP+ +LQHI S++P++ A+RT +LSK W   W   P L+F+   
Sbjct: 17  RSKNVSVDVGVDSISDLPDAVLQHIFSYIPTELAIRTSVLSKRWRHVWSETPHLSFEWLK 76

Query: 61  --EDLFERELLEMRAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKAS 118
               L  + L    A++  ++ F+          + + EA  HH ++       + F  S
Sbjct: 77  VSPKLINKTLASYTASK--IKSFHLCT-------RYSYEADTHHVNSS------IEFAMS 121

Query: 119 F-LDDSELA-DRCV-------CYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLD 169
             +DD  LA  RC        C+   S++K +EL  +                       
Sbjct: 122 HNVDDLSLAFRRCSPFYNFDDCFYTNSSLKRVELRYV----------------------- 158

Query: 170 LFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIK 229
                  +   R  V   SL+ L L     SD+    +++GCP++E L  +FC  LK + 
Sbjct: 159 -------DLMPRCMVSWTSLKNLSLTDCTMSDESFLEILSGCPILESLSLKFCMSLKYLN 211

Query: 230 LFGRSKLRDIKIK 242
           L    +L  ++I+
Sbjct: 212 LSKSLRLTRLEIE 224

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSJ3|FBL48_ARATH Putative F-box/LRR-repeat protein At3g28410 OS=Arabidopsis thaliana GN=At3g28410 PE=4 SV=2

 Score = 72.4 bits (176), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 104/242 (42%), Gaps = 39/242 (16%)

Query: 5   RSMKPKIDNADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLF 64
           R ++  ID AD I+ +P+ +L HI+SF+P+  A+RT +LS+ W   WC  P         
Sbjct: 18  RKIQRIIDGADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPC-------- 69

Query: 65  ERELLEMRAARGDV-QKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDS 123
               L+++   G+  Q        ++  +K  ++                      L+D+
Sbjct: 70  ----LDIKLKHGETNQTLTSYTAPIITSFKLVMD----------------------LNDN 103

Query: 124 EL--ADRCVCYAIESTVKELELHT-ILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPG 180
            +   D  + +A+   V+ L +        + Y  P +   S ++  LD+        P 
Sbjct: 104 TVPQVDSWIEFALSRNVQNLSVFVRDFTYTKTYRFPDIFYISSSLKQLDVTLDFFDMIPT 163

Query: 181 RNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIK 240
             +V   SLR L L   +  D+ + N+++GCP++E L  + C  L+ + L     LR + 
Sbjct: 164 -CAVSWKSLRNLTLRFCQIPDESMHNILSGCPILESLTLDTCRLLERLDLSKSPNLRRLD 222

Query: 241 IK 242
           I 
Sbjct: 223 IN 224

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	481
449476923	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.889	0.912	0.326	2e-59
449458247	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.889	0.912	0.326	3e-59
224121624	528	predicted protein [Populus trichocarpa]	0.773	0.704	0.329	2e-39
224124628	524	f-box family protein [Populus trichocarp	0.864	0.793	0.286	3e-37
224119688	563	f-box family protein [Populus trichocarp	0.935	0.799	0.284	1e-36
147833276	521	hypothetical protein VITISV_011919 [Viti	0.914	0.844	0.308	1e-35
297743071	552	unnamed protein product [Vitis vinifera]	0.914	0.797	0.297	9e-33
225442254	520	PREDICTED: putative F-box protein At3g44	0.904	0.836	0.298	1e-32
357454743	761	Agglutinin alpha chain [Medicago truncat	0.841	0.532	0.279	1e-29
356557323	833	PREDICTED: uncharacterized protein LOC10	0.827	0.477	0.270	1e-27

>gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 148/453 (32%), Positives = 239/453 (52%), Gaps = 25/453 (5%)

Query: 15  DRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLEMRAA 74
           D IS LP+P+LQHI+SFL  K  ++T +LSK W   W TFP   FD++ F  E       
Sbjct: 2   DLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFHIE------- 54

Query: 75  RGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELA--DRCVCY 132
                K    R  L+N+ +Q L+  +         + K +    F + + +   DR + Y
Sbjct: 55  ----SKLQNKRFHLINFVEQTLKQLK--------CLRKFKLHTDFPEPNSMVVVDRWIDY 102

Query: 133 AIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKL 192
            +ES V+ELE+   +   + Y+LPQ V  ++++ VL +  C L   P  +  KL S++ +
Sbjct: 103 VLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLC--PSLDGYKLLSMKSV 160

Query: 193 RLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNI 252
            L  V A D+ ++ LV+ CP I+ +  + C GL+++ L   ++L  ++++      E   
Sbjct: 161 SLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRNLWLCETNELITMEVQNNSGLYEFGT 220

Query: 253 NALNGHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVC 312
            A+N  +           IN  SCKNLK+L L + ++ D+  +   +   +LE L L  C
Sbjct: 221 KAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILALSYC 280

Query: 313 FELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLN 372
             L++++ISS  LK+  +  C  +  V+I+TP LS  +++G V+ FS + A  L + D+ 
Sbjct: 281 HMLESLRISSSHLKKFILCGCESVTRVDIDTPCLSGLEFSGDVISFSLN-APALSQADIE 339

Query: 373 LYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNF 432
           L    FD  W VK IE +A F+   K L L S+ G+SV++P+ELR+    PL GVKHL  
Sbjct: 340 LSPRIFDNPWVVKQIEFLAHFNHL-KSLTLQSQTGKSVVIPQELRETFGSPLYGVKHLKL 398

Query: 433 SISIPFKKFAIAQVVDGLLWMSPHVDTVTIEYG 465
            I  P    ++  +V  LLW++P   T+ +E G
Sbjct: 399 RIIKPLFSPSLKDLVKALLWIAPQPQTIAVESG 431

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 148/453 (32%), Positives = 238/453 (52%), Gaps = 25/453 (5%)

Query: 15  DRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLEMRAA 74
           D IS LP+P+LQHI+SFL  K  ++T +LSK W   W TFP   FD++ F  E       
Sbjct: 2   DLISELPDPILQHILSFLSIKQIIQTTILSKRWIHLWLTFPSFEFDKNFFHIE------- 54

Query: 75  RGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELA--DRCVCY 132
                K    R  L+N+ +Q L+  +         + K +    F + + +   DR + Y
Sbjct: 55  ----SKLQNKRFHLINFVEQTLKQLK--------CLRKFKLHTDFPEPNSMVVVDRWIDY 102

Query: 133 AIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKL 192
            +ES V+ELE+   +   + Y+LPQ V  ++++ VL +  C L   P  +  KL S++ +
Sbjct: 103 VLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLC--PSLDGYKLLSMKSV 160

Query: 193 RLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNI 252
            L  V A D+ ++ LV+ CP I+ +  + C GL+S+ L   ++L  ++++      E   
Sbjct: 161 SLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRSLWLCETNELITMEVQNNSGLYEFGT 220

Query: 253 NALNGHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVC 312
            A+N  +           IN  SCKNLK+L L + ++ D+  +   +   +LE L L  C
Sbjct: 221 KAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEILALSYC 280

Query: 313 FELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLN 372
             L++++ISS  LK+  +  C  +  V+I+ P LS  +++G V+ FS + A  L + D+ 
Sbjct: 281 HMLESLRISSSHLKKFILCGCESVTRVDIDAPCLSGLEFSGDVISFSLN-APALSQADIE 339

Query: 373 LYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNF 432
           L    FD  W VK IE +A F+   K L L S+ G+SV++P+ELR+    PL GVKHL  
Sbjct: 340 LSPRIFDNPWVVKQIEFLAHFNHL-KSLTLQSQTGKSVVIPQELRETFGSPLYGVKHLKL 398

Query: 433 SISIPFKKFAIAQVVDGLLWMSPHVDTVTIEYG 465
            I  P    ++  +V  LLW++P   T+ +E G
Sbjct: 399 RIIKPLFSPSLKDLVKALLWIAPQPQTIAVESG 431

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121624|ref|XP_002330747.1| predicted protein [Populus trichocarpa] gi|222872523|gb|EEF09654.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 130/394 (32%), Positives = 200/394 (50%), Gaps = 22/394 (5%)

Query: 15  DRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLEMRAA 74
           D IS  P+ +L HI+SFLP+KD +RT +LSK W+    T+P+L+F       +  +   +
Sbjct: 2   DHISRFPDGVLHHILSFLPTKDVLRTSILSKRWKLVLDTYPILDFSWGDCAGQSSDAMYS 61

Query: 75  RGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELA---DRCVC 131
                ++ Q   K +NY    ++         K S++K +     L D EL+   D+ V 
Sbjct: 62  ENASDEYRQMLTKFMNY----VDTSIFRFCKYKFSMQKFKLFL-VLPDLELSSHLDKWVQ 116

Query: 132 YAIESTVKELELHTILRG----DRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLP 187
             IE+  KE++    L G     + Y +P  +  +++V VL LFGC + +      +KL 
Sbjct: 117 KVIENGAKEVDFGIDLPGYLHFKKPYSMPDAIFAAKSVTVLKLFGCNV-KLEESFCIKLH 175

Query: 188 SLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGR-- 245
           SL+KL L +V+  D ++  +V  CPL+ED+   FC GLK I++F   +L+  +I      
Sbjct: 176 SLQKLALKEVQMDDHLLRRIVTCCPLLEDISLRFCWGLKKIQVFELLRLKKFEIYSHLSK 235

Query: 246 -EAEEVNINALNGH--SITVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLV 302
            E+ E+   +L     S TV S  P   ++  +C+ LKSL L  + V +  L   + +  
Sbjct: 236 PESVEIKSPSLESFHCSFTVRSVKPIVSVD--ACQGLKSLILSGSFVTELLLQDLVPKFH 293

Query: 303 VLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFSSST 362
           VLE L +  C  L+ +KISS  LK LEI  C  +  +EI TPNL  CKY G VVP S   
Sbjct: 294 VLESLRVGDCPVLKKVKISSWRLKSLEIHSCENIMDIEINTPNLLSCKYCGSVVPVSLIN 353

Query: 363 ALKL-LETDLNLYTINFDPQWYVKFIELIAKFHQ 395
           A     + + +L     D  WY+   E +AK +Q
Sbjct: 354 APSCHWQVEFSLMN-TLDILWYMTLKEFLAKLNQ 386

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124628|ref|XP_002319379.1| f-box family protein [Populus trichocarpa] gi|222857755|gb|EEE95302.1| f-box family protein [Populus trichocarpa]

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 134/467 (28%), Positives = 223/467 (47%), Gaps = 51/467 (10%)

Query: 8   KPKIDNADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERE 67
           KP I   D IS LP+P++QHIMS LP KDA R  +LSK +  AW +FP++  DE L    
Sbjct: 14  KP-IQEVDLISELPDPIIQHIMSSLPYKDAARMSILSKRFASAWTSFPIIFLDETLNMGS 72

Query: 68  LLEMRAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELAD 127
            LE+       QK N      L+Y    L   R       +S+EK  F     + SE  +
Sbjct: 73  CLELTGK----QKLNS----FLSYVGAFLSRRRL-----DVSLEKFSFCFCLNNSSEQPN 119

Query: 128 ----RCVCYAIESTVKELELHTILRGDRL---YHLPQMVVCSETVNVLDLFGCILLEFPG 180
                 +CYAIE+ VKELEL  + +  +    Y LP  V+ +++V VL L G  +LE P 
Sbjct: 120 GGIENAICYAIENNVKELELDFVGKSFKCMAHYSLPMKVLSAQSVMVLSLKG-FMLEPP- 177

Query: 181 RNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIK 240
                                   +NLV   P I++L  E C+G++++ +  ++ L+ + 
Sbjct: 178 ------------------------QNLVLDFPFIKELRLEKCKGMQTLSVSSQT-LKIVV 212

Query: 241 IKGGREAEEVNINALNGHSITVVSPLPSG-KINEVSCKNLKSLFLCITSVVDETLSYHIT 299
           ++  +  E+V I+A N  S +      S   ++  +CK+L+ L L    + DE + + + 
Sbjct: 213 LESCQRLEKVEIDASNLESFSFGGGANSSCSVDITACKSLEYLSLKNAEITDEWIKHEVA 272

Query: 300 RLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFS 359
           + + LE   ++ C  L+N  +S+ +LK +E+  C+ L  +EI + +L+   Y G ++P  
Sbjct: 273 QFLRLEVFKVVGCRLLENFHVSNANLKTVELSDCSNLQKIEIYSRSLNTFVYGGQLMPSQ 332

Query: 360 SSTALKLLETDLNLYTINFDPQ-WYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQ 418
                      ++L   +  P  W+  F + ++ F    K L +      ++IVP + R 
Sbjct: 333 VFIYSPSFHAKVSLSVDHPLPHDWFSSFRDFLSCFDH-CKELEIACSIEMALIVPIDSRD 391

Query: 419 ILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTIEYG 465
            L PPL  +K+L      P K   +  ++D LLW +P +  ++   G
Sbjct: 392 SLLPPLYDLKYLKVVAKFPTKSEDLVGLLDSLLWFAPRLTVLSFVSG 438

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119688|ref|XP_002318135.1| f-box family protein [Populus trichocarpa] gi|222858808|gb|EEE96355.1| f-box family protein [Populus trichocarpa]

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 141/495 (28%), Positives = 241/495 (48%), Gaps = 45/495 (9%)

Query: 7   MKPKIDNADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFER 66
           M  ++D +DRIS LP+ +L +I+S+L  +  VR  +LSK W +   +FPV +F ED+   
Sbjct: 27  MGIRVDASDRISRLPDHVLHYILSYLSIRAVVRFSVLSKTWHRISTSFPVSDFSEDVL-- 84

Query: 67  ELLEMRAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDS--- 123
               +   R ++Q +   + K +++ + +L A  HH      +    +F+ S   DS   
Sbjct: 85  ----LLGKRYEIQDW---KNKFIDFVQDSLLAQHHH------NTRSHKFRLSMDLDSYDP 131

Query: 124 ---ELADRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPG 180
                AD  +  A +  V E +L+   +    Y LP+ ++ +E + VL L G   L  P 
Sbjct: 132 QLTSRADHLLELATKCGVYEFDLN--FQNISHYCLPRALLSAEEITVLRLNGNYKLSLP- 188

Query: 181 RNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIK 240
           R+++  PSLR L L  VR  + +++NL+ GCPLIE L   +C G+KSI++ G  KL++++
Sbjct: 189 RDAINWPSLRVLSLMNVRVDEAILQNLICGCPLIEKLALVYCYGVKSIRISGCIKLKEVE 248

Query: 241 IKGGR---EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSL---FLCITSVVDETL 294
           +  G    E  E+++ +L     T         I+   C+NL+ L   F  IT V+ +  
Sbjct: 249 VNEGDSVLERMEIHVPSLRTFCYTTGLVKSFFHIDMTGCRNLELLKLKFYNITEVIGQVF 308

Query: 295 SYHITRLVVLECLGLIVCF--ELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYN 352
              I +   L+ L L  C+   +  IKIS+P L++L+++  + L  V I +P+L   K+ 
Sbjct: 309 QDLIAQFPALKVLAL-NCYATSVSRIKISNPQLEKLQLWS-SALTKVTITSPSLHSFKHF 366

Query: 353 GGVVPFSSS-TALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVI 411
               P + S     L +  L+++        +++  E +  F+Q  ++   ++  G   I
Sbjct: 367 TYGFPSAFSLDQSSLQKATLHVHKGALYSSDFLQLREYLGNFNQIRRLTLRINYVGIRFI 426

Query: 412 VPKELRQILPPPLSGVKHLNFSISIPFKKFA-------IAQVVDGLLWMSPHVDTVTIEY 464
            P+ L  I  P L  +KHL   I                  +VDGLLW+  H +T+ +  
Sbjct: 427 -PETLNNISIPALPDIKHLKLKICPSTGASGSLANLKDYRDIVDGLLWVC-HPETILLIS 484

Query: 465 GRAFRFCF-QILYKK 478
           G +    F QIL +K
Sbjct: 485 GWSSENLFIQILCEK 499

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833276|emb|CAN68530.1| hypothetical protein VITISV_011919 [Vitis vinifera] gi|297743067|emb|CBI35934.3| unnamed protein product [Vitis vinifera]

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 148/480 (30%), Positives = 232/480 (48%), Gaps = 40/480 (8%)

Query: 12  DNADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFE-RELLE 70
           +  DRIS LP+ +L  I+  LP+KD  R+ LLS+ W K     P  +    +F+  + LE
Sbjct: 3   EEQDRISHLPDDILIRILGLLPTKDVARSSLLSQAWRKL---SPFSSLSLLMFQCPDFLE 59

Query: 71  MRAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCV 130
                 DV  F       +N    +L       +  +L   +L      ++   L D  +
Sbjct: 60  SCRKNTDVSSF-------INAIDSSLRLRPKDVNLARL---RLHLDLDDIESESLIDSWI 109

Query: 131 CYAIESTVKELELHTILRG-DRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSL 189
             A+E  VKEL+L+   R   + Y LP  +  + T+ VL L  C  LE  G   + LP+L
Sbjct: 110 DAALERKVKELDLYLRPRSIAKPYGLPAKIFSTTTITVLSLEQC-RLEICG--DIDLPAL 166

Query: 190 RKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEE 249
           RKL L Q+R  +Q I  L++ CPLIEDL    C GL+ + + G + L  +++        
Sbjct: 167 RKLCLRQIRCDEQAIRQLISSCPLIEDLDIASCGGLQKLHVSGLANLHRLEVICCYNLRR 226

Query: 250 VNINALN-GHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLG 308
           + I+A +  H +     LP   +    C+ L+ L L    + ++ L    +    LE L 
Sbjct: 227 IEIDAPSLQHLVYHCGRLPCDMV-LTPCEFLRELILHDPHITNDFLQNLDSGFPNLERLE 285

Query: 309 LIVCFELQNIKISSPSLKRLEIFKCTKL---AAVEIETPNLSKCKYNGGVVPFSSSTA-- 363
            I    LQ I+IS   LKRLE+ K T L   A ++I+ PNL    Y+G  +P +S+ +  
Sbjct: 286 -IDSTRLQRIEISHHQLKRLEL-KLTPLQKEAKLKIDAPNLQSFTYSGYRMPLTSTISSM 343

Query: 364 --LKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSK---VLNLLSECGESVIVPKELRQ 418
               L E +++    N    +   FI  + +F + SK   V+NLL +  E +I+P++LR 
Sbjct: 344 NTSSLREAEIHFRNYN---DYSHFFIPQLKEFFEKSKNCQVINLLIKSKEELIIPRKLRP 400

Query: 419 ILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTIEYGRAFRFCFQILYKK 478
           IL PP+  +KHL   +S   +      ++D +LWM  H  T++I  G   RF  ++LY K
Sbjct: 401 ILSPPVYDIKHLYLRVSYCSR---FQYIIDRMLWMC-HPQTLSILSGTNVRF-LKVLYNK 455

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743071|emb|CBI35938.3| unnamed protein product [Vitis vinifera]

 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 146/491 (29%), Positives = 230/491 (46%), Gaps = 51/491 (10%)

Query: 6   SMKPKIDNADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEK--AWCTFPVLNFDEDL 63
           S+   ++  DRIS LP+ +L  I+S LP+K+  RT LLSK W K   + +  VL F    
Sbjct: 29  SVSVMVEEQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKLSPFSSLSVLMFQSPD 88

Query: 64  FERELLEMRAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDS 123
           F       R    DV  F       +N    +L   +   S  +L   +LR   + ++  
Sbjct: 89  F----FHSRRKNFDVSSF-------INAIDSSLRLRQKDVSLARL---QLRLHLNDIESE 134

Query: 124 ELADRCVCYAIESTVKELELHTILRG-DRLYHLPQMVVCSETVNVLDLFGCILLEFPGRN 182
            L D  +  A+E  VKEL+L+ + R     Y LP  +  + T+ VL L  C  LE  G  
Sbjct: 135 SLIDSWIDAALERKVKELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQC-RLEICG-- 191

Query: 183 SVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIK 242
            V LP+LRKL L ++   +Q I  L++ CPLIEDL    C  LK + + G + L  + + 
Sbjct: 192 DVDLPALRKLCLRKILCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVT 251

Query: 243 GGREAEEVNINA------LNGHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSY 296
                  + I+A      +  H  +++       +     + L+ L L    + ++ L  
Sbjct: 252 CCYNLRRIEIDAPSLQYFMYDHQRSLLC-----DVVWTPGEFLRELILHDRHITNDLLQN 306

Query: 297 HITRLVVLECLGLIVCFELQNIKISSPSLKRLE--IFKCTKLAAVEIETPNLSKCKYNGG 354
            ++ +  LE L  I    LQ I+IS   LKRLE  + +  + A ++I+ PNL    Y G 
Sbjct: 307 LVSGVPNLERLE-IDSTRLQRIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGY 365

Query: 355 VVPF----SSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSK---VLNLLSECG 407
            +P     SS     L E +++    N    +   FI  + +F + SK   V+NLL +  
Sbjct: 366 RMPLTSMISSMNTSSLREAEIHFRNCN---DYSHFFILQLKEFFEKSKNCQVINLLIKSK 422

Query: 408 ESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTIEYGRA 467
           E +I+P++LR I  PP+  +KHL+    I +       ++D +LWM  H  T++IE    
Sbjct: 423 EELIIPRKLRPIPSPPVYDIKHLHL---IVYYCSRFQYIIDRMLWMC-HPQTLSIETSAK 478

Query: 468 FRFCFQILYKK 478
           F    ++LY K
Sbjct: 479 F---LKVLYNK 486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442254|ref|XP_002275641.1| PREDICTED: putative F-box protein At3g44060 [Vitis vinifera]

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 145/486 (29%), Positives = 228/486 (46%), Gaps = 51/486 (10%)

Query: 11  IDNADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEK--AWCTFPVLNFDEDLFEREL 68
           ++  DRIS LP+ +L  I+S LP+K+  RT LLSK W K   + +  VL F    F    
Sbjct: 2   VEEQDRISYLPDDILIRILSLLPTKEIARTSLLSKAWRKLSPFSSLSVLMFQSPDF---- 57

Query: 69  LEMRAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADR 128
              R    DV  F       +N    +L   +   S  +L   +LR   + ++   L D 
Sbjct: 58  FHSRRKNFDVSSF-------INAIDSSLRLRQKDVSLARL---QLRLHLNDIESESLIDS 107

Query: 129 CVCYAIESTVKELELHTILRG-DRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLP 187
            +  A+E  VKEL+L+ + R     Y LP  +  + T+ VL L  C  LE  G   V LP
Sbjct: 108 WIDAALERKVKELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQC-RLEICG--DVDLP 164

Query: 188 SLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREA 247
           +LRKL L ++   +Q I  L++ CPLIEDL    C  LK + + G + L  + +      
Sbjct: 165 ALRKLCLRKILCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVTCCYNL 224

Query: 248 EEVNINA------LNGHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRL 301
             + I+A      +  H  +++       +     + L+ L L    + ++ L   ++ +
Sbjct: 225 RRIEIDAPSLQYFMYDHQRSLLC-----DVVWTPGEFLRELILHDRHITNDLLQNLVSGV 279

Query: 302 VVLECLGLIVCFELQNIKISSPSLKRLE--IFKCTKLAAVEIETPNLSKCKYNGGVVPF- 358
             LE L  I    LQ I+IS   LKRLE  + +  + A ++I+ PNL    Y G  +P  
Sbjct: 280 PNLERLE-IDSTRLQRIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLT 338

Query: 359 ---SSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSK---VLNLLSECGESVIV 412
              SS     L E +++    N    +   FI  + +F + SK   V+NLL +  E +I+
Sbjct: 339 SMISSMNTSSLREAEIHFRNCN---DYSHFFILQLKEFFEKSKNCQVINLLIKSKEELII 395

Query: 413 PKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTIEYGRAFRFCF 472
           P++LR I  PP+  +KHL+    I +       ++D +LWM  H  T++IE    F    
Sbjct: 396 PRKLRPIPSPPVYDIKHLHL---IVYYCSRFQYIIDRMLWMC-HPQTLSIETSAKF---L 448

Query: 473 QILYKK 478
           ++LY K
Sbjct: 449 KVLYNK 454

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454743|ref|XP_003597652.1| Agglutinin alpha chain [Medicago truncatula] gi|355486700|gb|AES67903.1| Agglutinin alpha chain [Medicago truncatula]

 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 201/433 (46%), Gaps = 28/433 (6%)

Query: 3   DVRSMKPKIDNADRISALPEPLLQHIMSFL-PSKDAVRTRLLSKIWEKAWCTFPVLNFDE 61
           +V  M   +++ DRIS LP+ ++ HI+SFL  ++DA+RT+ LSK W   W ++  L F E
Sbjct: 30  NVEQMIQIVESVDRISQLPDHVIYHILSFLRNTRDAIRTKCLSKRWRTLWFSYAALIFYE 89

Query: 62  DLFERELLEMRAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLD 121
             F        A  G     N+      N ++Q +    H      L ++KL       D
Sbjct: 90  QKFA-------AGIGPEDGSNKE-----NLFRQHVADSLHTYLANNLQIQKLLLHMMSFD 137

Query: 122 --DSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFP 179
             D+ L D  +  A+   ++E++L    +    Y LP++V+ SET+  L L GCIL    
Sbjct: 138 LTDAPLVDSWLTSAVSQDIQEIDLQIGFKDINRYTLPEVVLSSETLTGLRLSGCILRRC- 196

Query: 180 GRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDI 239
              ++ LP L+KL L +V   +Q++ NL++ CP IEDL F  C GLK + +   S L  +
Sbjct: 197 --GNIMLPRLQKLYLRKVHLGEQIVTNLISCCPSIEDLRFVQCSGLKFLYIHCDS-LSRL 253

Query: 240 KIKGGREAEEVNINALNGHSITVVSPLPSG-KINEVSCKNLKSLFLCITSVVDETLSYHI 298
           +I    + +   I A N  +        +  K+N   C +LK L L    V  +      
Sbjct: 254 EIHNCNQLKTAYIFAPNLDTFWFCGKKSTPCKVNLEDCASLKKLTLEHPRVSRDFCENQF 313

Query: 299 TRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVP- 357
            +  +LE L L +  ++++I I +  L+R+ +  C KL  V+I  P L   +  G  +P 
Sbjct: 314 NKFPLLEKLDLCIADKMKSITIFNRCLQRIVLKGCKKLTYVQIYAPKLVSFELKGETMPY 373

Query: 358 FSSSTALKLLETDLNLYT------INFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVI 411
           F   T   L +  ++L T      +    Q +      I+ F    +   ++    + +I
Sbjct: 374 FDFVTPFLLTDAKISLSTATESRDVGLGNQLWFMMRPFISLFFP-VEGFKMIMHSSKHII 432

Query: 412 VPKELRQILPPPL 424
           + ++L  I  PPL
Sbjct: 433 IHEDLSSIKCPPL 445

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557323|ref|XP_003546966.1| PREDICTED: uncharacterized protein LOC100794867 [Glycine max]

 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/421 (27%), Positives = 199/421 (47%), Gaps = 23/421 (5%)

Query: 13  NADRISALPEPLLQHIMSFLPS-KDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLEM 71
           + DRIS  P+ ++ HI+S L +  DA+RT +LSK W + W ++ VL FDE  F  ++   
Sbjct: 158 SVDRISQFPDHVIHHILSHLRNVNDAIRTSVLSKRWRELWYSYSVLIFDERKFAAKIGHE 217

Query: 72  RAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVC 131
            ++   +   +     LL    + L+         KL +    F    L+D+   +  + 
Sbjct: 218 DSSNKGMMFRDYVSNSLLTSNAKNLQIR-------KLVLHMTSF--DLLEDAPCLELWLN 268

Query: 132 YAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRK 191
            AI   +KEL+LH  ++    Y LPQ V  S+T+  + L GC L      N++KLP L+K
Sbjct: 269 IAIYRNIKELDLHVGIKNGECYTLPQTVFSSKTLTGIRLSGCKLGTC---NNIKLPYLQK 325

Query: 192 LRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVN 251
           L L ++   +  I+NL++ C  +EDL    C GLK + +    +L+  +I    + ++V 
Sbjct: 326 LYLRKIPLVENFIQNLISCCHSVEDLRIIKCSGLKHLHVSNLIRLKRAEIHHCIQLKKVE 385

Query: 252 INALNGHSITVVSPLPSG-KINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLI 310
           I+A N  +        S  K++   C +LK L L    V  +      +   +LE L L 
Sbjct: 386 ISAPNLDTFWYCGKKTSPCKVSLEGCTSLKRLTLEHPQVTRDFCENQFSNFPLLEKLDLS 445

Query: 311 VCFELQN-IKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFSSSTALKLLET 369
           +       I IS+P L++  +  C KL  V +E PNL   +  G  +P+       L + 
Sbjct: 446 MSNNKSRFIIISNPHLEKFTLKGCKKLGIVLVEAPNLLSFECKGETMPWVEIHPFGLTQA 505

Query: 370 DLNLY------TINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPP 423
            L+         + +  + +++    I KF++    L L S   +S+++ ++L  ++ PP
Sbjct: 506 KLSFVPKSEPRVVGYGDKIWIRMKSFIQKFNRERFKLVLYSN--KSIVIHEDLNNVILPP 563

Query: 424 L 424
           +
Sbjct: 564 V 564

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	481
TAIR|locus:2099644	481	AT3G03360 [Arabidopsis thalian	0.488	0.488	0.243	1.9e-13
TAIR|locus:2092737	456	AT3G18150 "AT3G18150" [Arabido	0.095	0.100	0.553	3.1e-13
TAIR|locus:1005716372	441	AT4G00315 "AT4G00315" [Arabido	0.291	0.317	0.299	6.5e-13
TAIR|locus:2101293	447	AT3G49020 "AT3G49020" [Arabido	0.222	0.239	0.333	1.1e-11
TAIR|locus:2151316	456	AT5G02700 "AT5G02700" [Arabido	0.106	0.111	0.431	1.3e-11
TAIR|locus:2055993	448	AT2G04230 "AT2G04230" [Arabido	0.484	0.520	0.262	2.6e-11
TAIR|locus:2162484	466	AT5G22730 "AT5G22730" [Arabido	0.224	0.231	0.295	5e-11
TAIR|locus:2122754	409	AT4G10400 "AT4G10400" [Arabido	0.180	0.212	0.322	1.8e-10
TAIR|locus:2151231	458	AT5G02910 "AT5G02910" [Arabido	0.093	0.098	0.511	3e-10
TAIR|locus:2088882	465	AT3G28410 "AT3G28410" [Arabido	0.106	0.109	0.431	3.1e-10

TAIR|locus:2099644 AT3G03360 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 1.9e-13, Sum P(3) = 1.9e-13
 Identities = 61/251 (24%), Positives = 116/251 (46%)

Query:   127 DRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDL-FGCI--LLEFPGRNS 183
             D  + +A+   V+ L L+  L  D+ Y +P+ +  + ++  L L FGC    +    + S
Sbjct:   127 DSWINFAMSRNVENLSLY--LDEDK-YDIPEFLYINSSLKQLYLDFGCKKDFISLNPKCS 183

Query:   184 VKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKG 243
             V   SL+ L L     SD+ I  +++GCP++E L+  FC+ LK + L    +L  ++I  
Sbjct:   184 VSWTSLKNLSLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDLSKSPRLITLEITR 243

Query:   244 GREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVV 303
                 E   + A +   + +++      + +VS  +   L +   ++VD  L     + +V
Sbjct:   244 RCRMEPTQLVAPHIRCLRLINSEKPCALVDVSSLSQAELDITAYAIVDNKLEADFHQTMV 303

Query:   304 LECLGLIVCFELQNIKISSPSLKRLEI-------FKCTKLAAVEIETPNLSKCKYNGGVV 356
             ++ L    C  ++ + + +  LK L +       F   K  A+ +ET  +S+   +G V 
Sbjct:   304 VKMLEK--CQNVEKLTLGANFLKMLSLAELRGVSFPKLKAKALILETM-ISRYVIHGIVK 360

Query:   357 PFSSSTALKLL 367
                +S  LK L
Sbjct:   361 VLQNSPDLKKL 371

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092737 AT3G18150 "AT3G18150" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
 Identities = 26/47 (55%), Positives = 33/47 (70%)

Query:    10 KIDNA-DRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFP 55
             KI  A D IS+LP+ +LQHI+SF+P+K A+ T LLSK W   WC  P
Sbjct:    25 KIKEAVDSISSLPDVILQHILSFIPTKLAITTSLLSKRWRHVWCDTP 71

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1005716372 AT4G00315 "AT4G00315" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 6.5e-13, Sum P(3) = 6.5e-13
 Identities = 44/147 (29%), Positives = 77/147 (52%)

Query:    77 DVQKFNQARGK-LLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYAI- 134
             D + ++ + G+ L  +   +L  H+   +   LS+ KLR+ A      E     V  A+ 
Sbjct:    47 DFRHYSVSEGQGLARFITLSLLGHKAP-AIESLSL-KLRYGAIGSIKPEDIYLWVSLAVH 104

Query:   135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRL 194
             +S V+EL L      +R   LP+ +   +++ +L L   IL++ P +  V LPSL+ L L
Sbjct:   105 DSNVRELSLKLCTFAERPTKLPKSLYKCKSIVILKLKDEILVDVPRK--VCLPSLKTLFL 162

Query:   195 AQVRASDQ-VIENLVAGCPLIEDLIFE 220
              +V  SD+  +  L++ CP++EDL+ E
Sbjct:   163 GRVTYSDEDSLHRLLSNCPVLEDLVVE 189

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101293 AT3G49020 "AT3G49020" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 1.1e-11, Sum P(3) = 1.1e-11
 Identities = 37/111 (33%), Positives = 58/111 (52%)

Query:   110 VEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQM-VVCSETVNVL 168
             ++ L  K    DD+      +  A    +++  L   L  +     P     C++T+ +L
Sbjct:    92 LDSLHLKVEDKDDALDVGILIGIAFSRHMRKFVLKITLLEESFVRFPSAWCSCNDTLEIL 151

Query:   169 DLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQV-IENLVAGCPLIEDLI 218
             +L  CILL+FP  + V L SLRKL L  VR +D+  + NL+ GCP +EDL+
Sbjct:   152 ELKYCILLDFP--SLVCLKSLRKLYLYHVRFNDEESVCNLLCGCPSLEDLV 200

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151316 AT5G02700 "AT5G02700" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
 Identities = 22/51 (43%), Positives = 34/51 (66%)

Query:     5 RSMKPKIDNADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFP 55
             R ++  ID AD I+ +P+ +L HI+SF+P+  A+RT +LS+ W   WC  P
Sbjct:    17 RRIQRIIDGADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETP 67

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055993 AT2G04230 "AT2G04230" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
 Identities = 69/263 (26%), Positives = 117/263 (44%)

Query:   130 VCYAIESTVKELELHTILRGDRLYHLPQMVVC-SETVNVLDLFGCILLEFPGRNSVKLPS 188
             +  A    V++L L +  + D+   LP ++   ++++ +L L   I L+FP R  V L S
Sbjct:   111 IATAFARGVRKLVLDSFYQEDQTVTLPSVLFSYNDSLEILKLKCAIDLDFPSR--VCLKS 168

Query:   189 LRKLRLAQVRASDQV-IENLVAGCPLIEDLIFEFCEGLKSIKLFG-------RSKLRDIK 240
             LRKL L QV   D+  + NL+ GCP ++DL+         +  F        R  + D++
Sbjct:   169 LRKLYLDQVHFKDEESVCNLLCGCPSLQDLVVHRYSNA-DVATFTIASPSLQRLTIEDLR 227

Query:   241 IKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITR 300
              +GG       INA     + +     +G I+  SC   K+L L    + + +    IT 
Sbjct:   228 QEGGYGNGSYVINAPGLKYLNI-----NGVIDIESCLIDKALELEEAKISNVS---GITN 279

Query:   301 LVVLECLGLI--VCFELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPF 358
               +LE L     +   L  +++  P+ K  +   C +L   E E  NL         +  
Sbjct:   280 ENILESLTSAKRLILHLSPLEVKVPTGKIFDQLGCLELLTHEREWWNLLS-------IML 332

Query:   359 SSSTALKLLE-TDLNLYTINFDP 380
              SS  L++L+ TD+ L+    +P
Sbjct:   333 DSSPKLQILKLTDVYLHDNKTNP 355

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162484 AT5G22730 "AT5G22730" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 5.0e-11, Sum P(3) = 5.0e-11
 Identities = 34/115 (29%), Positives = 65/115 (56%)

Query:   107 KLSVEKLRFKA-SFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLP-QMVVCSET 164
             K+ ++KL+  +   ++D     R + + +   +K L++  ++    L  +P  + VC   
Sbjct:    98 KICLDKLKLSSRKTVNDLPCVTRWIDFVVRRKLKHLDVECLVNRKFLEEMPLSLYVCDTL 157

Query:   165 VNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQ-VRASDQVIENLVAGCPLIEDLI 218
             VN L L   +L +F    +V LP L+ +RL + V A+D V+E+L++ CP+++DLI
Sbjct:   158 VN-LRLHRVLLGKF---EAVSLPCLKTMRLEENVYANDVVLESLISSCPVLKDLI 208

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122754 AT4G10400 "AT4G10400" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
 Identities = 29/90 (32%), Positives = 52/90 (57%)

Query:   130 VCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSL 189
             V  A+   ++EL++++   G++   LP  +   +++ +L L G +LL+ P    V LPSL
Sbjct:    96 VVVAVSRYIRELKIYSSHYGEKQNILPSSLYTCKSLVILKLDGGVLLDVP--RMVCLPSL 153

Query:   190 RKLRLAQVRASDQ-VIENLVAGCPLIEDLI 218
             + L L  VR   Q  ++ L+  CP++EDL+
Sbjct:   154 KTLELKGVRYFKQGSLQRLLCNCPVLEDLV 183

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151231 AT5G02910 "AT5G02910" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
 Identities = 23/45 (51%), Positives = 30/45 (66%)

Query:    11 IDNADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFP 55
             ID  D IS+LP+ +L HI+S +P+K A+RT LLSK W   W   P
Sbjct:     7 IDGMDFISSLPDEILHHILSSVPTKSAIRTSLLSKRWRYVWSETP 51

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088882 AT3G28410 "AT3G28410" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
 Identities = 22/51 (43%), Positives = 34/51 (66%)

Query:     5 RSMKPKIDNADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFP 55
             R ++  ID AD I+ +P+ +L HI+SF+P+  A+RT +LS+ W   WC  P
Sbjct:    18 RKIQRIIDGADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETP 68

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	481
pfam00646	48	pfam00646, F-box, F-box domain	6e-04
PRK09630	479	PRK09630, PRK09630, DNA topoisomerase IV subunit A	0.004

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 37.2 bits (87), Expect = 6e-04
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 15 DRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNF 59
            +  LP+ LL  I+S L  KD +R  L+SK W     +  +   
Sbjct: 1  FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKK 45

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|170022 PRK09630, PRK09630, DNA topoisomerase IV subunit A; Provisional

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 20/132 (15%)

Query: 4   VRSMKPKIDNADRISALPEPLLQHIMSFL------PSKDAVRTRLLSKIWEKAWCTFPVL 57
           VR M  K   +   S L   +L+ +  FL        K A   +L S   +K  C     
Sbjct: 357 VREMLSKRKTSPSSSDLHNAVLEALTPFLDTLPTPVDKQAT-AQLASLTIKKILC----- 410

Query: 58  NFDEDLFERELLEMRAARGDVQK-FNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFK 116
            F+E+ + +EL  +   +  VQK  +Q +   + Y K  LE +      G    +  +FK
Sbjct: 411 -FNENSYTKELACIEKKQAAVQKDLSQLKKYTVKYLKGLLETYGQ---LGHRKTQIAKFK 466

Query: 117 A---SFLDDSEL 125
           A   S L   EL
Sbjct: 467 AKKLSALKQQEL 478

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	481
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.8
KOG4341	483	consensus F-box protein containing LRR [General fu	99.73
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.66
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.63
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.5
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.45
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.39
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.24
KOG4341	483	consensus F-box protein containing LRR [General fu	99.19
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.11
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.03
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.01
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.88
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.85
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.78
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.63
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.6
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.56
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.44
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.4
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.38
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.35
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.34
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.34
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.3
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.29
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.28
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.11
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.99
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.96
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.69
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.68
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.55
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.53
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.52
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.46
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.41
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.38
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.34
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.3
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.26
KOG0617	264	consensus Ras suppressor protein (contains leucine	97.19
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.19
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.16
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.97
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.82
PRK15386	426	type III secretion protein GogB; Provisional	96.34
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.26
PRK15386	426	type III secretion protein GogB; Provisional	96.15
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.12
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.78
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	95.72
PLN03150	623	hypothetical protein; Provisional	95.66
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.51
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.38
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.3
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.19
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	95.18
PLN03150	623	hypothetical protein; Provisional	94.89
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.88
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	94.1
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.9
KOG2997	366	consensus F-box protein FBX9 [General function pre	93.61
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	93.21
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.67
KOG2123	388	consensus Uncharacterized conserved protein [Funct	91.61
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	91.14
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	90.26
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	90.15
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	90.1
PF13013	109	F-box-like_2: F-box-like domain	87.79
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.28
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	86.99
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	86.33
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	86.2
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	85.58
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	82.98
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	82.91
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	82.72
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.18
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	81.64

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=7.2e-21  Score=170.05  Aligned_cols=260  Identities=19%  Similarity=0.236  Sum_probs=147.5

Q ss_pred             ccCCCCCHHHHHHHHcCCChhHHHhhhcccccchhhhccCC---eeEeeccchhhHHHHHHhhcCchhhhHHHHHHHHHH
Q 036097           15 DRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFP---VLNFDEDLFERELLEMRAARGDVQKFNQARGKLLNY   91 (481)
Q Consensus        15 d~i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (481)
                      -.++.|||||+..||+.|+.+|+.+++.|||||.++-+...   .++.......+.                        
T Consensus        96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~------------------------  151 (419)
T KOG2120|consen   96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPD------------------------  151 (419)
T ss_pred             CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChh------------------------
Confidence            34789999999999999999999999999999997433211   133333332221                        


Q ss_pred             HHHHHHhccCCCCCCCcceeEEEEEEEeeCChhhHHHHHHHHHhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEc
Q 036097           92 WKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLF  171 (481)
Q Consensus        92 v~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~  171 (481)
                      +...+.++.         +.-|++-.....+...+.  ....++.+++.++|+..  ..+...+-..+..|.+|+.|.|.
T Consensus       152 ~l~~l~~rg---------V~v~Rlar~~~~~prlae--~~~~frsRlq~lDLS~s--~it~stl~~iLs~C~kLk~lSlE  218 (419)
T KOG2120|consen  152 VLGRLLSRG---------VIVFRLARSFMDQPRLAE--HFSPFRSRLQHLDLSNS--VITVSTLHGILSQCSKLKNLSLE  218 (419)
T ss_pred             HHHHHHhCC---------eEEEEcchhhhcCchhhh--hhhhhhhhhHHhhcchh--heeHHHHHHHHHHHHhhhhcccc
Confidence            111222221         544444422112221111  11234457888888876  44444555555678888888888


Q ss_pred             CeeccCCCCCCCcCCCcceEEEecce-ecChHHHHHHhcCCCccceeEeeeecCcceE-----eecCCCCCcEEEEccCC
Q 036097          172 GCILLEFPGRNSVKLPSLRKLRLAQV-RASDQVIENLVAGCPLIEDLIFEFCEGLKSI-----KLFGRSKLRDIKIKGGR  245 (481)
Q Consensus       172 ~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-----~i~~~~~L~~L~l~~~~  245 (481)
                      |..+.+......+.-.+|+.|+|+.+ .++...+..++++|..|.+|+++.|...+..     .-.+ ++|+.|++++|.
T Consensus       219 g~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his-e~l~~LNlsG~r  297 (419)
T KOG2120|consen  219 GLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS-ETLTQLNLSGYR  297 (419)
T ss_pred             ccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc-hhhhhhhhhhhH
Confidence            87774433223345567788888776 4566667777778888888888877654432     0012 444444444442


Q ss_pred             CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEEechhhhHHhhhcCCcccEEEeccccccccccc----cccc
Q 036097          246 EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQN----IKIS  321 (481)
Q Consensus       246 ~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~----l~~~  321 (481)
                      .                   .                   +....+..+...||+|.+|+|++   |..++.    ....
T Consensus       298 r-------------------n-------------------l~~sh~~tL~~rcp~l~~LDLSD---~v~l~~~~~~~~~k  336 (419)
T KOG2120|consen  298 R-------------------N-------------------LQKSHLSTLVRRCPNLVHLDLSD---SVMLKNDCFQEFFK  336 (419)
T ss_pred             h-------------------h-------------------hhhhHHHHHHHhCCceeeecccc---ccccCchHHHHHHh
Confidence            0                   0                   22233445556666666666666   544442    1223


Q ss_pred             CCcccEEEecCCCCccc---cc-ccCCCcceeEecc
Q 036097          322 SPSLKRLEIFKCTKLAA---VE-IETPNLSKCKYNG  353 (481)
Q Consensus       322 ~~~L~~L~l~~c~~l~~---~~-~~~p~L~~L~~~~  353 (481)
                      ++.|++|.++.|..+..   +. ...|+|.+|...|
T Consensus       337 f~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g  372 (419)
T KOG2120|consen  337 FNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFG  372 (419)
T ss_pred             cchheeeehhhhcCCChHHeeeeccCcceEEEEecc
Confidence            56666666666665432   11 2235555555544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.73  E-value=2.5e-19  Score=167.29  Aligned_cols=354  Identities=16%  Similarity=0.210  Sum_probs=192.4

Q ss_pred             CCCCHHHHHHHHcCCChhHHHhhhcccccchhh------hccCCeeEeeccchhhHHHHHHhhcCchhhhHHHHHHHHHH
Q 036097           18 SALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKA------WCTFPVLNFDEDLFERELLEMRAARGDVQKFNQARGKLLNY   91 (481)
Q Consensus        18 ~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (481)
                      -.||+|++.+|||+|+.+.+++++.+|+.|+.+      |.++....|..+.-                        ...
T Consensus        73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~------------------------g~V  128 (483)
T KOG4341|consen   73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVD------------------------GGV  128 (483)
T ss_pred             ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCC------------------------Ccc
Confidence            479999999999999999999999999999974      44443322222210                        001


Q ss_pred             HHHHHHhccCCCCCCCcceeEEEEEEEeeCChhhHHHHHHHHHhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEc
Q 036097           92 WKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLF  171 (481)
Q Consensus        92 v~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~  171 (481)
                      |...+. |.+                                  ..+++|++..+ .......+......|+++++|++.
T Consensus       129 V~~~~~-Rcg----------------------------------g~lk~LSlrG~-r~v~~sslrt~~~~CpnIehL~l~  172 (483)
T KOG4341|consen  129 VENMIS-RCG----------------------------------GFLKELSLRGC-RAVGDSSLRTFASNCPNIEHLALY  172 (483)
T ss_pred             eehHhh-hhc----------------------------------ccccccccccc-ccCCcchhhHHhhhCCchhhhhhh
Confidence            111111 111                                  23444444443 122222333333467777777777


Q ss_pred             CeeccCCCCC----CCcCCCcceEEEecce-ecChHHHHHHhcCCCccceeEeeeecCcceEe----ecCCCCCcEEEEc
Q 036097          172 GCILLEFPGR----NSVKLPSLRKLRLAQV-RASDQVIENLVAGCPLIEDLIFEFCEGLKSIK----LFGRSKLRDIKIK  242 (481)
Q Consensus       172 ~~~~~~~~~~----~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~----i~~~~~L~~L~l~  242 (481)
                      +|..  +...    ....+++|+.|+|..| .+++..+..+..+||+|++|+++.|+.+..-.    ..++..++++...
T Consensus       173 gc~~--iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~k  250 (483)
T KOG4341|consen  173 GCKK--ITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLK  250 (483)
T ss_pred             ccee--ccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhc
Confidence            7752  1111    1234667777777774 45666666677777777777777776544311    1223444444444


Q ss_pred             cCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE----echhhhHHhhhcCCcccEEEecccccccccc--
Q 036097          243 GGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC----ITSVVDETLSYHITRLVVLECLGLIVCFELQ--  316 (481)
Q Consensus       243 ~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~----~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~--  316 (481)
                      +|.....-                 .....-..++.+.++++.    +++..+..+..++..|+.|+.++   |..+.  
T Consensus       251 GC~e~~le-----------------~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~---~t~~~d~  310 (483)
T KOG4341|consen  251 GCLELELE-----------------ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSS---CTDITDE  310 (483)
T ss_pred             ccccccHH-----------------HHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccC---CCCCchH
Confidence            44311000                 000011222333333332    66666666667777777777777   66654  


Q ss_pred             ---cccccCCcccEEEecCCCCccc-----ccccCCCcceeEeccccc-CCcchhhhhccCCCccEEEEeeChhhHHH-H
Q 036097          317 ---NIKISSPSLKRLEIFKCTKLAA-----VEIETPNLSKCKYNGGVV-PFSSSTALKLLETDLNLYTINFDPQWYVK-F  386 (481)
Q Consensus       317 ---~l~~~~~~L~~L~l~~c~~l~~-----~~~~~p~L~~L~~~~~~~-~~~~~~~l~~~~~~L~~l~l~~~~~~~~~-~  386 (481)
                         .+...+++|+.|.+..|..+.+     +..+++.|+.+...+... .+....++..+|+.|+.+.++.|...++. +
T Consensus       311 ~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi  390 (483)
T KOG4341|consen  311 VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGI  390 (483)
T ss_pred             HHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhh
Confidence               3444567777777777776554     455667777776665332 22334455567888888888766544332 1


Q ss_pred             HHHHhhcccceeeEEEEEEeec--eeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097          387 IELIAKFHQWSKVLNLLSECGE--SVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       387 ~~~~~~l~~L~~l~~L~i~~~~--~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                      ..+-..-.+.+.+..+.++...  .+...+.     ....++|+.+++-.+....    ...+..+-..+|+++....
T Consensus       391 ~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~-----l~~c~~Leri~l~~~q~vt----k~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  391 RHLSSSSCSLEGLEVLELDNCPLITDATLEH-----LSICRNLERIELIDCQDVT----KEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             hhhhhccccccccceeeecCCCCchHHHHHH-----HhhCcccceeeeechhhhh----hhhhHHHHhhCccceehhh
Confidence            1111111222222225555221  1111222     3335678887777766555    4455666667888887666

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.66  E-value=2.1e-16  Score=175.99  Aligned_cols=262  Identities=13%  Similarity=-0.009  Sum_probs=161.2

Q ss_pred             hCCeeEEEEEEeecCCcccccCCccc-CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097          135 ESTVKELELHTILRGDRLYHLPQMVV-CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL  213 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  213 (481)
                      .++++.|+++.+   .-...+|..++ .+.+|++|+|++|.+....+  ...+++|++|+|++|.+... +...+..+++
T Consensus        92 l~~L~~L~Ls~n---~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p--~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~  165 (968)
T PLN00113         92 LPYIQTINLSNN---QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP--RGSIPNLETLDLSNNMLSGE-IPNDIGSFSS  165 (968)
T ss_pred             CCCCCEEECCCC---ccCCcCChHHhccCCCCCEEECcCCccccccC--ccccCCCCEEECcCCccccc-CChHHhcCCC
Confidence            478899988875   12346777766 78899999999988754322  24578899999998877532 2233567888


Q ss_pred             cceeEeeeecCcce--EeecCCCCCcEEEEccCCCC---ceEEEecCCccEEEEcCC--CCCCceeccCCCCCcEEEEE-
Q 036097          214 IEDLIFEFCEGLKS--IKLFGRSKLRDIKIKGGREA---EEVNINALNGHSITVVSP--LPSGKINEVSCKNLKSLFLC-  285 (481)
Q Consensus       214 Le~L~l~~~~~~~~--l~i~~~~~L~~L~l~~~~~~---~~~~~~~p~L~~L~l~~~--~~~~~~~~~~~~~L~~L~l~-  285 (481)
                      |++|++++|.....  -.+..+++|+.|++++|...   ......+++|+.|+++++  .+..+..+..+++|++|++. 
T Consensus       166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  245 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY  245 (968)
T ss_pred             CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence            99999988753222  23455688888888887622   122235678888888877  33455667888888888876 


Q ss_pred             --echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccc---ccccCCCcceeEecccccCCcc
Q 036097          286 --ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA---VEIETPNLSKCKYNGGVVPFSS  360 (481)
Q Consensus       286 --~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~---~~~~~p~L~~L~~~~~~~~~~~  360 (481)
                        +.+ .++..+.++++|+.|++++|.....+.......++|+.|++++|.....   .....++|+.|.+.++.+....
T Consensus       246 n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~  324 (968)
T PLN00113        246 NNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKI  324 (968)
T ss_pred             ceecc-ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcC
Confidence              222 3445567778888888887332222222223356778888877652222   2234567777777776554333


Q ss_pred             hhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeec
Q 036097          361 STALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGE  408 (481)
Q Consensus       361 ~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~  408 (481)
                      ...+. .+++|+.+++..+...    ..++..+..+.+|+.|+++.+.
T Consensus       325 ~~~~~-~l~~L~~L~L~~n~l~----~~~p~~l~~~~~L~~L~Ls~n~  367 (968)
T PLN00113        325 PVALT-SLPRLQVLQLWSNKFS----GEIPKNLGKHNNLTVLDLSTNN  367 (968)
T ss_pred             ChhHh-cCCCCCEEECcCCCCc----CcCChHHhCCCCCcEEECCCCe
Confidence            32222 5677777777554411    1223333344444446666443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.63  E-value=6.7e-16  Score=171.95  Aligned_cols=307  Identities=13%  Similarity=0.049  Sum_probs=173.0

Q ss_pred             hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      ..++++|++..+   .....+|..+.++++|++|++++|.+....+.....+++|++|++++|.+... +...+..+++|
T Consensus       235 l~~L~~L~L~~n---~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L  310 (968)
T PLN00113        235 LTSLNHLDLVYN---NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE-IPELVIQLQNL  310 (968)
T ss_pred             CCCCCEEECcCc---eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC-CChhHcCCCCC
Confidence            367888888765   22345677777788888888888877544333455677888888887766432 23335667777


Q ss_pred             ceeEeeeecCcce--EeecCCCCCcEEEEccCCCC---ceEEEecCCccEEEEcCC--CC--------------------
Q 036097          215 EDLIFEFCEGLKS--IKLFGRSKLRDIKIKGGREA---EEVNINALNGHSITVVSP--LP--------------------  267 (481)
Q Consensus       215 e~L~l~~~~~~~~--l~i~~~~~L~~L~l~~~~~~---~~~~~~~p~L~~L~l~~~--~~--------------------  267 (481)
                      ++|++++|.....  ..+..+++|+.|++++|...   .......++|+.|+++++  .+                    
T Consensus       311 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n  390 (968)
T PLN00113        311 EILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN  390 (968)
T ss_pred             cEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCC
Confidence            7777776642211  12334566777777666411   111123455555555554  11                    


Q ss_pred             ----CCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccccc
Q 036097          268 ----SGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVE  340 (481)
Q Consensus       268 ----~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~  340 (481)
                          ..+..+..+++|+.|++.   +++ .++..+..+++|+.|++++|............+++|+.|++++|.....++
T Consensus       391 ~l~~~~p~~~~~~~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p  469 (968)
T PLN00113        391 SLEGEIPKSLGACRSLRRVRLQDNSFSG-ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP  469 (968)
T ss_pred             EecccCCHHHhCCCCCCEEECcCCEeee-ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecC
Confidence                222334455555555554   221 123334556666666666643322222222345677777777765332221


Q ss_pred             --ccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeece-eeechhhh
Q 036097          341 --IETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGES-VIVPKELR  417 (481)
Q Consensus       341 --~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~-~~~~~~~~  417 (481)
                        ...++|+.|.++++.+.......+. ++++|+.++++.+.    ..+.++..+.++.+|+.|+++.|.. ...|+.  
T Consensus       470 ~~~~~~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~----l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--  542 (968)
T PLN00113        470 DSFGSKRLENLDLSRNQFSGAVPRKLG-SLSELMQLKLSENK----LSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS--  542 (968)
T ss_pred             cccccccceEEECcCCccCCccChhhh-hhhccCEEECcCCc----ceeeCChHHcCccCCCEEECCCCcccccCChh--
Confidence              2346677777777665543332332 56777777776554    1122334455555555688876643 234433  


Q ss_pred             ccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097          418 QILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       418 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                         +..+++|+.|+++.+.-.+      .++..+...++|+.|.+
T Consensus       543 ---~~~l~~L~~L~Ls~N~l~~------~~p~~l~~l~~L~~l~l  578 (968)
T PLN00113        543 ---FSEMPVLSQLDLSQNQLSG------EIPKNLGNVESLVQVNI  578 (968)
T ss_pred             ---HhCcccCCEEECCCCcccc------cCChhHhcCcccCEEec
Confidence               4556778888887765322      34555667778888888

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.50  E-value=4.5e-15  Score=144.33  Aligned_cols=288  Identities=15%  Similarity=0.124  Sum_probs=142.3

Q ss_pred             hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      .++++++++..+    ....+|.......+|+.|+|.+|.+..+.......+|.|++|+|+.|.++.-.... +..-+++
T Consensus       101 l~nLq~v~l~~N----~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~s-fp~~~ni  175 (873)
T KOG4194|consen  101 LPNLQEVNLNKN----ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPS-FPAKVNI  175 (873)
T ss_pred             CCcceeeeeccc----hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCC-CCCCCCc
Confidence            367777777665    55666766556666777777777776555445555677777777777654311110 2234567


Q ss_pred             ceeEeeeec--CcceEeecCCCCCcEEEEccCC---CCceEEEecCCccEEEEcCCCCC--CceeccCCCCCcEEEEE--
Q 036097          215 EDLIFEFCE--GLKSIKLFGRSKLRDIKIKGGR---EAEEVNINALNGHSITVVSPLPS--GKINEVSCKNLKSLFLC--  285 (481)
Q Consensus       215 e~L~l~~~~--~~~~l~i~~~~~L~~L~l~~~~---~~~~~~~~~p~L~~L~l~~~~~~--~~~~~~~~~~L~~L~l~--  285 (481)
                      ++|+++++.  .++.-++.++.+|..|+++++.   .+.......|.|+.|++..+...  ....|.+++.|+.|.+.  
T Consensus       176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN  255 (873)
T KOG4194|consen  176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN  255 (873)
T ss_pred             eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc
Confidence            777777663  2222234445666666666665   22223334666666666555111  12234444444444443  


Q ss_pred             ----echhh--------------------hHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccccc-
Q 036097          286 ----ITSVV--------------------DETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVE-  340 (481)
Q Consensus       286 ----~~~~~--------------------~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~-  340 (481)
                          +.+..                    -..++-++++|++|++++|..-..-.+-.-.+++|+.|++++. .+..+. 
T Consensus       256 ~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~  334 (873)
T KOG4194|consen  256 DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSN-RITRLDE  334 (873)
T ss_pred             CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccc-ccccCCh
Confidence                11111                    1122334444444444442211000011111455666666552 233221 


Q ss_pred             ---ccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeCh-hhH-HHHHHHHhhcccceeeEEEEEEeeceeeechh
Q 036097          341 ---IETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDP-QWY-VKFIELIAKFHQWSKVLNLLSECGESVIVPKE  415 (481)
Q Consensus       341 ---~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~-~~~-~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~  415 (481)
                         .....|+.|.++++.+.-..-.++ ..+.+|++|++..+. .|. ++-...+.+++.|++   |.+.+|....++..
T Consensus       335 ~sf~~L~~Le~LnLs~Nsi~~l~e~af-~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk---L~l~gNqlk~I~kr  410 (873)
T KOG4194|consen  335 GSFRVLSQLEELNLSHNSIDHLAEGAF-VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK---LRLTGNQLKSIPKR  410 (873)
T ss_pred             hHHHHHHHhhhhcccccchHHHHhhHH-HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh---eeecCceeeecchh
Confidence               112445555555544332111111 245666766664333 221 122233344555555   88877766666632


Q ss_pred             hhccCCCCCCCCceEEEEecc
Q 036097          416 LRQILPPPLSGVKHLNFSISI  436 (481)
Q Consensus       416 ~~~~~~~~l~~L~~L~l~~~~  436 (481)
                          .+.-|.+|++|+|..+.
T Consensus       411 ----Afsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  411 ----AFSGLEALEHLDLGDNA  427 (873)
T ss_pred             ----hhccCcccceecCCCCc
Confidence                34557778888887654

>PLN03210 Resistant to P

Probab=99.45  E-value=2.4e-13  Score=152.44  Aligned_cols=122  Identities=18%  Similarity=0.210  Sum_probs=84.3

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      .+++.|++..+    ....+|..+ ...+|+.|+++++.+...+. ....+++|+.|+|+++.... .++. ++.+++|+
T Consensus       589 ~~Lr~L~~~~~----~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~-~~~~l~~Lk~L~Ls~~~~l~-~ip~-ls~l~~Le  660 (1153)
T PLN03210        589 PKLRLLRWDKY----PLRCMPSNF-RPENLVKLQMQGSKLEKLWD-GVHSLTGLRNIDLRGSKNLK-EIPD-LSMATNLE  660 (1153)
T ss_pred             cccEEEEecCC----CCCCCCCcC-CccCCcEEECcCcccccccc-ccccCCCCCEEECCCCCCcC-cCCc-cccCCccc
Confidence            45777777654    446677654 67889999999988866553 45578889999998764221 1111 56688899


Q ss_pred             eeEeeeecCcceE--eecCCCCCcEEEEccCCCCceEE--EecCCccEEEEcCC
Q 036097          216 DLIFEFCEGLKSI--KLFGRSKLRDIKIKGGREAEEVN--INALNGHSITVVSP  265 (481)
Q Consensus       216 ~L~l~~~~~~~~l--~i~~~~~L~~L~l~~~~~~~~~~--~~~p~L~~L~l~~~  265 (481)
                      +|++.+|..+..+  .+..+++|+.|++++|..+..+.  +.+++|+.|.+++|
T Consensus       661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc  714 (1153)
T PLN03210        661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC  714 (1153)
T ss_pred             EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCC
Confidence            9999888766554  34556888888888887444433  35678888888877

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.39  E-value=4.3e-14  Score=137.62  Aligned_cols=283  Identities=12%  Similarity=0.083  Sum_probs=184.0

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccC-CCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVC-SETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      +-++.|+|+.+    ...++|...+. -.++++|+|++|++.++....+.++.+|.+|.|+.|+++. -....+.+.|+|
T Consensus       149 ~alrslDLSrN----~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~~L  223 (873)
T KOG4194|consen  149 PALRSLDLSRN----LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLPKL  223 (873)
T ss_pred             hhhhhhhhhhc----hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhhhcchh
Confidence            56777777776    34455544443 4789999999999987766667778899999999998864 233446779999


Q ss_pred             ceeEeeeec--CcceEeecCCCCCcEEEEccCC--CC-ceEEEecCCccEEEEcCC--CCCCceeccCCCCCcEEEEE--
Q 036097          215 EDLIFEFCE--GLKSIKLFGRSKLRDIKIKGGR--EA-EEVNINALNGHSITVVSP--LPSGKINEVSCKNLKSLFLC--  285 (481)
Q Consensus       215 e~L~l~~~~--~~~~l~i~~~~~L~~L~l~~~~--~~-~~~~~~~p~L~~L~l~~~--~~~~~~~~~~~~~L~~L~l~--  285 (481)
                      +.|++..+.  ..+.+.+.++++|+.|++.++.  .+ ..+...+.+++.|++.-+  ..-....+-++..|+.|+++  
T Consensus       224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N  303 (873)
T KOG4194|consen  224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN  303 (873)
T ss_pred             hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence            999998773  2334556678999999998876  23 234567888899988776  23345567788888888877  


Q ss_pred             -echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcccc----cccCCCcceeEecccccCCcc
Q 036097          286 -ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV----EIETPNLSKCKYNGGVVPFSS  360 (481)
Q Consensus       286 -~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~L~~~~~~~~~~~  360 (481)
                       |..-. ...-..+++|+.|+|++|++..-=+.-......|+.|++++. .+..+    .....+|++|.++.+.+....
T Consensus       304 aI~rih-~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~I  381 (873)
T KOG4194|consen  304 AIQRIH-IDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCI  381 (873)
T ss_pred             hhheee-cchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence             11111 122257889999999986532221222233567888888873 34432    234478888888776554322


Q ss_pred             ---hhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEec
Q 036097          361 ---STALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSIS  435 (481)
Q Consensus       361 ---~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  435 (481)
                         ..++. .+++|++|++..++ .....++-+.+++.|+   .|++.+|.+..+.++    .+.++ +|+.|.+.+.
T Consensus       382 EDaa~~f~-gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE---~LdL~~NaiaSIq~n----AFe~m-~Lk~Lv~nSs  449 (873)
T KOG4194|consen  382 EDAAVAFN-GLPSLRKLRLTGNQ-LKSIPKRAFSGLEALE---HLDLGDNAIASIQPN----AFEPM-ELKELVMNSS  449 (873)
T ss_pred             ecchhhhc-cchhhhheeecCce-eeecchhhhccCcccc---eecCCCCcceeeccc----ccccc-hhhhhhhccc
Confidence               11233 58999999886654 1112233344555444   499997865544422    24444 7888877654

>PLN03210 Resistant to P

Probab=99.24  E-value=1.6e-11  Score=137.89  Aligned_cols=232  Identities=19%  Similarity=0.199  Sum_probs=138.1

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeecc-CCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILL-EFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      .++++|++..+    ....+|..+..+++|+.|+|+++... .+|  ....+++|++|+|.+|.... .+..-+..+++|
T Consensus       611 ~~L~~L~L~~s----~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L  683 (1153)
T PLN03210        611 ENLVKLQMQGS----KLEKLWDGVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLV-ELPSSIQYLNKL  683 (1153)
T ss_pred             cCCcEEECcCc----cccccccccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCcc-ccchhhhccCCC
Confidence            57888888776    45567777788999999999987543 333  35568999999999885432 233346778999


Q ss_pred             ceeEeeeecCcceEeec-CCCCCcEEEEccCCCCceEEEecCCccEEEEcCCC-CCCceeccCCCCCcEEEEE-ec----
Q 036097          215 EDLIFEFCEGLKSIKLF-GRSKLRDIKIKGGREAEEVNINALNGHSITVVSPL-PSGKINEVSCKNLKSLFLC-IT----  287 (481)
Q Consensus       215 e~L~l~~~~~~~~l~i~-~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~-~~----  287 (481)
                      +.|++++|..++.+... .+++|+.|.+++|..+..+....++|++|+++++. ...+.. ..+++|++|.+. ..    
T Consensus       684 ~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~-~~l~~L~~L~l~~~~~~~l  762 (1153)
T PLN03210        684 EDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSN-LRLENLDELILCEMKSEKL  762 (1153)
T ss_pred             CEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccc-ccccccccccccccchhhc
Confidence            99999999877665332 46899999999998665555455788888887762 222211 134445444443 10    


Q ss_pred             ----------------------------hhhhHHhhhcCCcccEEEecccccccccccccc--cCCcccEEEecCCCCcc
Q 036097          288 ----------------------------SVVDETLSYHITRLVVLECLGLIVCFELQNIKI--SSPSLKRLEIFKCTKLA  337 (481)
Q Consensus       288 ----------------------------~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~--~~~~L~~L~l~~c~~l~  337 (481)
                                                  ...++..+.++++|+.|++.+   |.+++.++.  ..++|+.|++++|..+.
T Consensus       763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~---C~~L~~LP~~~~L~sL~~L~Ls~c~~L~  839 (1153)
T PLN03210        763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN---CINLETLPTGINLESLESLDLSGCSRLR  839 (1153)
T ss_pred             cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC---CCCcCeeCCCCCccccCEEECCCCCccc
Confidence                                        111233344555555555555   544443322  23455555555555544


Q ss_pred             cccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeCh
Q 036097          338 AVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDP  380 (481)
Q Consensus       338 ~~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~  380 (481)
                      .++...++|+.|.+.++.+...+ ..+ ..+++|+.+++..|+
T Consensus       840 ~~p~~~~nL~~L~Ls~n~i~~iP-~si-~~l~~L~~L~L~~C~  880 (1153)
T PLN03210        840 TFPDISTNISDLNLSRTGIEEVP-WWI-EKFSNLSFLDMNGCN  880 (1153)
T ss_pred             cccccccccCEeECCCCCCccCh-HHH-hcCCCCCEEECCCCC
Confidence            44433445555555554333211 111 144555555555544

syringae 6; Provisional

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.19  E-value=1.1e-12  Score=123.25  Aligned_cols=275  Identities=16%  Similarity=0.167  Sum_probs=183.6

Q ss_pred             CCccEEEEcCeeccCCCC--CCCcCCCcceEEEecce-ecChHHHHHHhcCCCccceeEeeeecCcceEeec----CCCC
Q 036097          163 ETVNVLDLFGCILLEFPG--RNSVKLPSLRKLRLAQV-RASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLF----GRSK  235 (481)
Q Consensus       163 ~~L~~L~L~~~~~~~~~~--~~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~----~~~~  235 (481)
                      ..|+.|.+.||+-.....  .....+|+++.|.+.++ +++|..+..+...|+.|+.|.+..|..++...+.    +|++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            458999999987543321  23457899999999888 5567888888889999999999998877664332    4788


Q ss_pred             CcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE----echhhhHHhhhcCCcccEEEeccccc
Q 036097          236 LRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC----ITSVVDETLSYHITRLVVLECLGLIV  311 (481)
Q Consensus       236 L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~----~~~~~~~~~~~~~~~L~~L~L~~~~~  311 (481)
                      |+.|++++|.....-                 .......+|++++.+.+.    .+.+.+.....+++.+..+++..   
T Consensus       218 L~~lNlSwc~qi~~~-----------------gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~---  277 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGN-----------------GVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQH---  277 (483)
T ss_pred             HHHhhhccCchhhcC-----------------cchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhh---
Confidence            888888888633220                 111223334444444332    45566666677888888888878   


Q ss_pred             cccccccc-----ccCCcccEEEecCCCCccc-----ccccCCCcceeEecccc-cCCcchhhhhccCCCccEEEEeeCh
Q 036097          312 CFELQNIK-----ISSPSLKRLEIFKCTKLAA-----VEIETPNLSKCKYNGGV-VPFSSSTALKLLETDLNLYTINFDP  380 (481)
Q Consensus       312 c~~l~~l~-----~~~~~L~~L~l~~c~~l~~-----~~~~~p~L~~L~~~~~~-~~~~~~~~l~~~~~~L~~l~l~~~~  380 (481)
                      |..+++..     ..+..|+.|..++|.++.+     +...+++|+.+.+.++. .++.-.+.+..+++.|+.+++..+.
T Consensus       278 c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~  357 (483)
T KOG4341|consen  278 CNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG  357 (483)
T ss_pred             hccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence            87776433     3478999999999998776     56788999999999854 4555556677899999999986666


Q ss_pred             hhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhh--ccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccc
Q 036097          381 QWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELR--QILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVD  458 (481)
Q Consensus       381 ~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~  458 (481)
                      ...+.  ++.+.-.++..|++|.++... .+..+.+.  .........|..+.++.++.+.    ...+ ..+..||+||
T Consensus       358 ~~~d~--tL~sls~~C~~lr~lslshce-~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~----d~~L-e~l~~c~~Le  429 (483)
T KOG4341|consen  358 LITDG--TLASLSRNCPRLRVLSLSHCE-LITDEGIRHLSSSSCSLEGLEVLELDNCPLIT----DATL-EHLSICRNLE  429 (483)
T ss_pred             eehhh--hHhhhccCCchhccCChhhhh-hhhhhhhhhhhhccccccccceeeecCCCCch----HHHH-HHHhhCcccc
Confidence            44332  344444444454557776221 11111100  1112335788999999998766    3333 4578999999


Q ss_pred             eEEE-eec
Q 036097          459 TVTI-EYG  465 (481)
Q Consensus       459 ~L~l-~~~  465 (481)
                      ++++ .|.
T Consensus       430 ri~l~~~q  437 (483)
T KOG4341|consen  430 RIELIDCQ  437 (483)
T ss_pred             eeeeechh
Confidence            9888 554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.11  E-value=2.3e-13  Score=133.59  Aligned_cols=81  Identities=10%  Similarity=0.113  Sum_probs=41.1

Q ss_pred             cCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHH
Q 036097          367 LETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQV  446 (481)
Q Consensus       367 ~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  446 (481)
                      .++.|+++.++.+.   -.+..+++++.+|..|..+...+|..+-+||.     +..+..|+.|.|+-+.-++       
T Consensus       289 KL~kL~kLy~n~Nk---L~FeGiPSGIGKL~~Levf~aanN~LElVPEg-----lcRC~kL~kL~L~~NrLiT-------  353 (1255)
T KOG0444|consen  289 KLTKLTKLYANNNK---LTFEGIPSGIGKLIQLEVFHAANNKLELVPEG-----LCRCVKLQKLKLDHNRLIT-------  353 (1255)
T ss_pred             hhHHHHHHHhccCc---ccccCCccchhhhhhhHHHHhhccccccCchh-----hhhhHHHHHhcccccceee-------
Confidence            44455555443332   13344556666665544555555555556655     5556666666665544322       


Q ss_pred             HhhhhhcCcccceEEE
Q 036097          447 VDGLLWMSPHVDTVTI  462 (481)
Q Consensus       447 l~~ll~~~p~L~~L~l  462 (481)
                      +|.-+.-.|.|+.|++
T Consensus       354 LPeaIHlL~~l~vLDl  369 (1255)
T KOG0444|consen  354 LPEAIHLLPDLKVLDL  369 (1255)
T ss_pred             chhhhhhcCCcceeec
Confidence            1222233555666665

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.03  E-value=1.2e-12  Score=128.55  Aligned_cols=277  Identities=14%  Similarity=0.110  Sum_probs=173.7

Q ss_pred             CeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccce
Q 036097          137 TVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIED  216 (481)
Q Consensus       137 ~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  216 (481)
                      .++.+.+..+  ......+|..+|.+..|..|+||+|.+...| .....-+++-.|+|++|.+. .....++.+.+.|-.
T Consensus        79 ~LRsv~~R~N--~LKnsGiP~diF~l~dLt~lDLShNqL~EvP-~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf  154 (1255)
T KOG0444|consen   79 RLRSVIVRDN--NLKNSGIPTDIFRLKDLTILDLSHNQLREVP-TNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF  154 (1255)
T ss_pred             hhHHHhhhcc--ccccCCCCchhcccccceeeecchhhhhhcc-hhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence            3444443333  4456678888888888888888888876665 24445677888888888773 223334445666777


Q ss_pred             eEeeeecCcceE--eecCCCCCcEEEEccCCCCceEE---EecCCccEEEEcCC---CCCCceeccCCCCCcEEEEEech
Q 036097          217 LIFEFCEGLKSI--KLFGRSKLRDIKIKGGREAEEVN---INALNGHSITVVSP---LPSGKINEVSCKNLKSLFLCITS  288 (481)
Q Consensus       217 L~l~~~~~~~~l--~i~~~~~L~~L~l~~~~~~~~~~---~~~p~L~~L~l~~~---~~~~~~~~~~~~~L~~L~l~~~~  288 (481)
                      |+++++. ++.+  .+.-+..|+.|++++++......   -++.+|+.|.+++.   ....+.++..+.||..++++-++
T Consensus       155 LDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~  233 (1255)
T KOG0444|consen  155 LDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN  233 (1255)
T ss_pred             hccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence            7777764 2221  22334677788888776211111   13345566666665   33467778888999999887222


Q ss_pred             -hhhHHhhhcCCcccEEEeccccccccccccccc---CCcccEEEecCCCCcccccc---cCCCcceeEeccccc-----
Q 036097          289 -VVDETLSYHITRLVVLECLGLIVCFELQNIKIS---SPSLKRLEIFKCTKLAAVEI---ETPNLSKCKYNGGVV-----  356 (481)
Q Consensus       289 -~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~---~~~L~~L~l~~c~~l~~~~~---~~p~L~~L~~~~~~~-----  356 (481)
                       -.++..+-++++|+.|+|++|++    +.+...   -.+|++|+++... +..++.   ..+.|+.|..+++..     
T Consensus       234 Lp~vPecly~l~~LrrLNLS~N~i----teL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGi  308 (1255)
T KOG0444|consen  234 LPIVPECLYKLRNLRRLNLSGNKI----TELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGI  308 (1255)
T ss_pred             CCcchHHHhhhhhhheeccCcCce----eeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCC
Confidence             33455567889999999999543    222221   2578888888743 443332   346677777666443     


Q ss_pred             CCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecc
Q 036097          357 PFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISI  436 (481)
Q Consensus       357 ~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  436 (481)
                      |...+     .+..|+.+....+.     +.-++.++..+..|+.|.+++|....+|+.     +.-++.|+.|++..+.
T Consensus       309 PSGIG-----KL~~Levf~aanN~-----LElVPEglcRC~kL~kL~L~~NrLiTLPea-----IHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  309 PSGIG-----KLIQLEVFHAANNK-----LELVPEGLCRCVKLQKLKLDHNRLITLPEA-----IHLLPDLKVLDLRENP  373 (1255)
T ss_pred             ccchh-----hhhhhHHHHhhccc-----cccCchhhhhhHHHHHhcccccceeechhh-----hhhcCCcceeeccCCc
Confidence            33332     33344443333222     233467777777777799999988889987     7778999999998876


Q ss_pred             cc
Q 036097          437 PF  438 (481)
Q Consensus       437 ~~  438 (481)
                      +.
T Consensus       374 nL  375 (1255)
T KOG0444|consen  374 NL  375 (1255)
T ss_pred             Cc
Confidence            43

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.01  E-value=1.1e-09  Score=115.16  Aligned_cols=255  Identities=15%  Similarity=0.092  Sum_probs=158.7

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      .+-..|+++..    ....+|..+.  ++|+.|.+.+|.+..+|.    ..++|++|++++|.++.  +.   ...++|+
T Consensus       201 ~~~~~LdLs~~----~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~Lts--LP---~lp~sL~  265 (788)
T PRK15387        201 NGNAVLNVGES----GLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS--LP---VLPPGLL  265 (788)
T ss_pred             CCCcEEEcCCC----CCCcCCcchh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCc--cc---Ccccccc
Confidence            34556776665    4456887664  479999999998876653    35889999999998753  22   1246889


Q ss_pred             eeEeeeecCcceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCC-CCCceeccCCCCCcEEEEEechhhhHHh
Q 036097          216 DLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPL-PSGKINEVSCKNLKSLFLCITSVVDETL  294 (481)
Q Consensus       216 ~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~  294 (481)
                      +|++.+|. +..+.- ...+|+.|++++|. +..+....++|+.|+++++. ...+.   ...+|+.|.+.  +..+..+
T Consensus       266 ~L~Ls~N~-L~~Lp~-lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~N~L~~Lp~---lp~~L~~L~Ls--~N~L~~L  337 (788)
T PRK15387        266 ELSIFSNP-LTHLPA-LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLPA---LPSELCKLWAY--NNQLTSL  337 (788)
T ss_pred             eeeccCCc-hhhhhh-chhhcCEEECcCCc-cccccccccccceeECCCCccccCCC---Ccccccccccc--cCccccc
Confidence            99998874 332211 12678888888875 23333345789999998872 22221   12346666544  2222222


Q ss_pred             hhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcccccccCCCcceeEecccccCCcchhhhhccCCCccEE
Q 036097          295 SYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLY  374 (481)
Q Consensus       295 ~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l  374 (481)
                      ....++|+.|++++|+    ++.++...++|+.|+++++ .+..++...++|+.|.++++.+.....     ..++|+.+
T Consensus       338 P~lp~~Lq~LdLS~N~----Ls~LP~lp~~L~~L~Ls~N-~L~~LP~l~~~L~~LdLs~N~Lt~LP~-----l~s~L~~L  407 (788)
T PRK15387        338 PTLPSGLQELSVSDNQ----LASLPTLPSELYKLWAYNN-RLTSLPALPSGLKELIVSGNRLTSLPV-----LPSELKEL  407 (788)
T ss_pred             cccccccceEecCCCc----cCCCCCCCcccceehhhcc-ccccCcccccccceEEecCCcccCCCC-----cccCCCEE
Confidence            2222478999998853    3333334467888888764 355555555678888888876654332     34678888


Q ss_pred             EEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecc
Q 036097          375 TINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISI  436 (481)
Q Consensus       375 ~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  436 (481)
                      +++.+.     +..++..+.+|.   .|+++.|....+|+.     +..+.+|+.|+|+++.
T Consensus       408 dLS~N~-----LssIP~l~~~L~---~L~Ls~NqLt~LP~s-----l~~L~~L~~LdLs~N~  456 (788)
T PRK15387        408 MVSGNR-----LTSLPMLPSGLL---SLSVYRNQLTRLPES-----LIHLSSETTVNLEGNP  456 (788)
T ss_pred             EccCCc-----CCCCCcchhhhh---hhhhccCcccccChH-----HhhccCCCeEECCCCC
Confidence            776654     122233233344   488887777777765     5557788889988775

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.88  E-value=4.4e-09  Score=110.81  Aligned_cols=251  Identities=14%  Similarity=0.068  Sum_probs=160.0

Q ss_pred             CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEEc
Q 036097          163 ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIK  242 (481)
Q Consensus       163 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~  242 (481)
                      .+-..|+++++.+..+|...   .++|+.|.+..|.++.  +   ....|+|++|++++|. ++.+... .++|+.|++.
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l---~~~L~~L~L~~N~Lt~--L---P~lp~~Lk~LdLs~N~-LtsLP~l-p~sL~~L~Ls  270 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCL---PAHITTLVIPDNNLTS--L---PALPPELRTLEVSGNQ-LTSLPVL-PPGLLELSIF  270 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcch---hcCCCEEEccCCcCCC--C---CCCCCCCcEEEecCCc-cCcccCc-ccccceeecc
Confidence            45778999999887666422   2579999999998753  2   1236899999999883 4433222 3789999998


Q ss_pred             cCCCCceEEEecCCccEEEEcCCC-CCCceeccCCCCCcEEEEEechhhhHHhhhcCCcccEEEeccccccccccccccc
Q 036097          243 GGREAEEVNINALNGHSITVVSPL-PSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNIKIS  321 (481)
Q Consensus       243 ~~~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~  321 (481)
                      ++. +..+....++|+.|+++++. ...+.   ..++|+.|+++  ...+..+....++|+.|.+.+|.    ++.++..
T Consensus       271 ~N~-L~~Lp~lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS--~N~L~~Lp~lp~~L~~L~Ls~N~----L~~LP~l  340 (788)
T PRK15387        271 SNP-LTHLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVS--DNQLASLPALPSELCKLWAYNNQ----LTSLPTL  340 (788)
T ss_pred             CCc-hhhhhhchhhcCEEECcCCccccccc---cccccceeECC--CCccccCCCCcccccccccccCc----ccccccc
Confidence            885 22222234678899988872 22221   34678888876  12222222233468888888743    2333333


Q ss_pred             CCcccEEEecCCCCcccccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEE
Q 036097          322 SPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLN  401 (481)
Q Consensus       322 ~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~  401 (481)
                      .++|+.|+++++ .+..++...++|+.|.++++.+.....     ..++|+.++++.+.     +..++...++++   .
T Consensus       341 p~~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~N~L~~LP~-----l~~~L~~LdLs~N~-----Lt~LP~l~s~L~---~  406 (788)
T PRK15387        341 PSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPA-----LPSGLKELIVSGNR-----LTSLPVLPSELK---E  406 (788)
T ss_pred             ccccceEecCCC-ccCCCCCCCcccceehhhccccccCcc-----cccccceEEecCCc-----ccCCCCcccCCC---E
Confidence            357999999884 466666556788888887766654322     34578888886554     223333334444   4


Q ss_pred             EEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097          402 LLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       402 L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                      |+++.|....+|..        +.+|+.|+++.+.-       ..+|.-+.++++|+.|.+
T Consensus       407 LdLS~N~LssIP~l--------~~~L~~L~Ls~NqL-------t~LP~sl~~L~~L~~LdL  452 (788)
T PRK15387        407 LMVSGNRLTSLPML--------PSGLLSLSVYRNQL-------TRLPESLIHLSSETTVNL  452 (788)
T ss_pred             EEccCCcCCCCCcc--------hhhhhhhhhccCcc-------cccChHHhhccCCCeEEC
Confidence            89987766656522        35788888877652       234555667889999988

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.85  E-value=2e-09  Score=71.78  Aligned_cols=37  Identities=32%  Similarity=0.647  Sum_probs=31.9

Q ss_pred             CCCCCHHHHHHHHcCCChhHHHhhhcccccchhhhcc
Q 036097           17 ISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCT   53 (481)
Q Consensus        17 i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l~~~   53 (481)
                      |+.||+||+.+||+||+.+|+++++.|||+|+++...
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~   37 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAND   37 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTC
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCC
Confidence            5789999999999999999999999999999986543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.78  E-value=3.3e-09  Score=102.87  Aligned_cols=41  Identities=10%  Similarity=-0.014  Sum_probs=22.7

Q ss_pred             CCCCCCCceEEEEecccchhhhHHHHHhhhh-hcCcccceEEEe
Q 036097          421 PPPLSGVKHLNFSISIPFKKFAIAQVVDGLL-WMSPHVDTVTIE  463 (481)
Q Consensus       421 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll-~~~p~L~~L~l~  463 (481)
                      .+.+.+|++++++.+.-....  ...+...+ ...++|+.+.++
T Consensus       274 ~~~~~~L~~l~l~~N~l~~~~--~~~~~~~~~~~~~~~~~~~~~  315 (319)
T cd00116         274 LAEKESLLELDLRGNKFGEEG--AQLLAESLLEPGNELESLWVK  315 (319)
T ss_pred             HhcCCCccEEECCCCCCcHHH--HHHHHHHHhhcCCchhhcccC
Confidence            444577888888776543322  22233223 334678877763

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.63  E-value=6.5e-11  Score=110.91  Aligned_cols=32  Identities=9%  Similarity=0.151  Sum_probs=19.5

Q ss_pred             CCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097          424 LSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       424 l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                      +.+|+.|++..+.       ...+|-.+++|.+|++|.+
T Consensus       504 m~nL~tLDL~nNd-------lq~IPp~LgnmtnL~hLeL  535 (565)
T KOG0472|consen  504 MRNLTTLDLQNND-------LQQIPPILGNMTNLRHLEL  535 (565)
T ss_pred             hhhcceeccCCCc-------hhhCChhhccccceeEEEe
Confidence            4566666665554       3445566667777777766

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.60  E-value=6.2e-08  Score=93.90  Aligned_cols=56  Identities=23%  Similarity=0.261  Sum_probs=34.3

Q ss_pred             EEEcCeeccCCC-CCCCcCCCcceEEEecceecChH---HHHHHhcCCCccceeEeeeec
Q 036097          168 LDLFGCILLEFP-GRNSVKLPSLRKLRLAQVRASDQ---VIENLVAGCPLIEDLIFEFCE  223 (481)
Q Consensus       168 L~L~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~---~l~~l~~~~p~Le~L~l~~~~  223 (481)
                      |+|.++.+.... ......+++|+.|++.++.+++.   .+...+...|.|++|.++++.
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~   62 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE   62 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccc
Confidence            555555543111 11223456789999998888663   344455677788888887664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.56  E-value=9.8e-09  Score=106.00  Aligned_cols=166  Identities=14%  Similarity=0.015  Sum_probs=80.3

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecce------------------
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQV------------------  197 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~------------------  197 (481)
                      ++++++.|..+    ....+|..+....+|++|++++|.+...|.. ...+..+..+..++|                  
T Consensus        91 ~~l~~lnL~~n----~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~  165 (1081)
T KOG0618|consen   91 RNLQYLNLKNN----RLQSLPASISELKNLQYLDLSFNHFGPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRL  165 (1081)
T ss_pred             hcchhheeccc----hhhcCchhHHhhhcccccccchhccCCCchh-HHhhhHHHHHhhhcchhhhhhccccchhhhhhh
Confidence            45666666554    4556666666666677777776666544431 111222222222222                  


Q ss_pred             -ecChHHHHHHhcCCCccce-eEeeeecCcceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccC
Q 036097          198 -RASDQVIENLVAGCPLIED-LIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVS  275 (481)
Q Consensus       198 -~~~~~~l~~l~~~~p~Le~-L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~  275 (481)
                       ...+..    +..--.|++ |+++++.-. ......+++|+.+....+ .+..+.+.-|+|+.|+...+.-.....-..
T Consensus       166 n~l~~~~----~~~i~~l~~~ldLr~N~~~-~~dls~~~~l~~l~c~rn-~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~  239 (1081)
T KOG0618|consen  166 NVLGGSF----LIDIYNLTHQLDLRYNEME-VLDLSNLANLEVLHCERN-QLSELEISGPSLTALYADHNPLTTLDVHPV  239 (1081)
T ss_pred             hhcccch----hcchhhhheeeecccchhh-hhhhhhccchhhhhhhhc-ccceEEecCcchheeeeccCcceeeccccc
Confidence             111100    111112222 455544322 222333344444443332 444555566667776666653222222223


Q ss_pred             CCCCcEEEEEe-chhhhHHhhhcCCcccEEEecccccc
Q 036097          276 CKNLKSLFLCI-TSVVDETLSYHITRLVVLECLGLIVC  312 (481)
Q Consensus       276 ~~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~L~~~~~c  312 (481)
                      -.+|++++++. .-..++.++..|++|+.+.+..|+++
T Consensus       240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~  277 (1081)
T KOG0618|consen  240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV  277 (1081)
T ss_pred             cccceeeecchhhhhcchHHHHhcccceEecccchhHH
Confidence            34677777762 22334577888888888888876653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=2.8e-08  Score=94.62  Aligned_cols=193  Identities=12%  Similarity=0.029  Sum_probs=119.7

Q ss_pred             CCCCccEEEEcCeeccCCCC-CCCcCCCcceEEEecceecCh-HHHHHHhcCCCccceeEeeeecCc---ceEeecCCCC
Q 036097          161 CSETVNVLDLFGCILLEFPG-RNSVKLPSLRKLRLAQVRASD-QVIENLVAGCPLIEDLIFEFCEGL---KSIKLFGRSK  235 (481)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~Le~L~l~~~~~~---~~l~i~~~~~  235 (481)
                      +.++|+...|.++.+...+. .....|++++.|+|+.+-+.. ..+..++...|+||.|.++.|.-.   .......+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            45667777777776643332 133467888888888876655 666777788888888888877421   1111223588


Q ss_pred             CcEEEEccCC----CCceEEEecCCccEEEEcCCCC--CCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEe
Q 036097          236 LRDIKIKGGR----EAEEVNINALNGHSITVVSPLP--SGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLEC  306 (481)
Q Consensus       236 L~~L~l~~~~----~~~~~~~~~p~L~~L~l~~~~~--~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L  306 (481)
                      ||.|.++.|.    ....+...+|+|+.|.+.++.+  ........+..|+.|+|+   +-+........++|.|+.|.+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            8888888887    3344456788888888887731  122344566778888877   333333345678888888888


Q ss_pred             cccccccccc---------cccccCCcccEEEecCCCC--cccc--cccCCCcceeEeccccc
Q 036097          307 LGLIVCFELQ---------NIKISSPSLKRLEIFKCTK--LAAV--EIETPNLSKCKYNGGVV  356 (481)
Q Consensus       307 ~~~~~c~~l~---------~l~~~~~~L~~L~l~~c~~--l~~~--~~~~p~L~~L~~~~~~~  356 (481)
                      +.   |..-.         +....+|+|+.|++...+-  +..+  ....++|+.|.+.++.+
T Consensus       279 s~---tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  279 SS---TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             cc---cCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence            77   43211         1123478888888887543  2221  12346667666655443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=1.1e-07  Score=86.43  Aligned_cols=198  Identities=16%  Similarity=0.110  Sum_probs=112.6

Q ss_pred             cceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--eecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCC
Q 036097          188 SLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI--KLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSP  265 (481)
Q Consensus       188 ~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l--~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~  265 (481)
                      +|+.|+|+...++...+..+++.|..|+.|.+.+..--+.+  .+..                     ..+|+.++++++
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk---------------------N~~L~~lnlsm~  244 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK---------------------NSNLVRLNLSMC  244 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc---------------------cccceeeccccc
Confidence            57888888777777778888888888888888766432222  1111                     123333333333


Q ss_pred             CCCCceeccCCCCCcEEEEEechhhhHHhhhcCCcccEEEecccccccccccccc-----cCCcccEEEecCCCC-cccc
Q 036097          266 LPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNIKI-----SSPSLKRLEIFKCTK-LAAV  339 (481)
Q Consensus       266 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~-----~~~~L~~L~l~~c~~-l~~~  339 (481)
                      .|                  ++.....-++.+|+.|..|+|+.   |.-.+....     ..++|+.|++++|.. +.  
T Consensus       245 sG------------------~t~n~~~ll~~scs~L~~LNlsW---c~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~--  301 (419)
T KOG2120|consen  245 SG------------------FTENALQLLLSSCSRLDELNLSW---CFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ--  301 (419)
T ss_pred             cc------------------cchhHHHHHHHhhhhHhhcCchH---hhccchhhhHHHhhhchhhhhhhhhhhHhhhh--
Confidence            22                  44555667778888888888888   766553321     246778888877652 11  


Q ss_pred             cccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhcc
Q 036097          340 EIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQI  419 (481)
Q Consensus       340 ~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~  419 (481)
                                        ......+...||+|..++++.+....+.   +...+-+...|++|.++-. -...|+.+.. 
T Consensus       302 ------------------~sh~~tL~~rcp~l~~LDLSD~v~l~~~---~~~~~~kf~~L~~lSlsRC-Y~i~p~~~~~-  358 (419)
T KOG2120|consen  302 ------------------KSHLSTLVRRCPNLVHLDLSDSVMLKND---CFQEFFKFNYLQHLSLSRC-YDIIPETLLE-  358 (419)
T ss_pred             ------------------hhHHHHHHHhCCceeeeccccccccCch---HHHHHHhcchheeeehhhh-cCCChHHeee-
Confidence                              1122223345666666666555433332   2233333444444777622 1222332111 


Q ss_pred             CCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccce
Q 036097          420 LPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDT  459 (481)
Q Consensus       420 ~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~  459 (481)
                       +...++|.+|++.++...+      ..+.+.+.||+|+.
T Consensus       359 -l~s~psl~yLdv~g~vsdt------~mel~~e~~~~lki  391 (419)
T KOG2120|consen  359 -LNSKPSLVYLDVFGCVSDT------TMELLKEMLSHLKI  391 (419)
T ss_pred             -eccCcceEEEEeccccCch------HHHHHHHhCccccc
Confidence             2334689999998887533      45666778987763

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.38  E-value=1.1e-07  Score=63.80  Aligned_cols=37  Identities=41%  Similarity=0.684  Sum_probs=31.3

Q ss_pred             CCCCCHHHHHHHHcCCChhHHHhhhcccccchhhhcc
Q 036097           17 ISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCT   53 (481)
Q Consensus        17 i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l~~~   53 (481)
                      +.+||+|++.+||++|+..|+++++.|||+|+++...
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence            5689999999999999999999999999999987655

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=8.8e-08  Score=91.28  Aligned_cols=131  Identities=16%  Similarity=0.130  Sum_probs=89.3

Q ss_pred             HhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCC-CCcCCCcceEEEecceecChHHHHHHhcCCC
Q 036097          134 IESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGR-NSVKLPSLRKLRLAQVRASDQVIENLVAGCP  212 (481)
Q Consensus       134 ~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  212 (481)
                      ..+++++|+|+.+. ......+...+..+|+|+.|+|+.|++...... ....+++|++|.|.+|.++-..+..++..||
T Consensus       144 ~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP  222 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP  222 (505)
T ss_pred             hCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence            34688888887651 223333334445678999999998887543322 2336789999999999998888888899999


Q ss_pred             ccceeEeeeecCcceE--eecCCCCCcEEEEccCCCC--c--eEEEecCCccEEEEcCC
Q 036097          213 LIEDLIFEFCEGLKSI--KLFGRSKLRDIKIKGGREA--E--EVNINALNGHSITVVSP  265 (481)
Q Consensus       213 ~Le~L~l~~~~~~~~l--~i~~~~~L~~L~l~~~~~~--~--~~~~~~p~L~~L~l~~~  265 (481)
                      .|+.|++.+|.+....  +..-+..|+.|+++++..+  .  ......|.|+.|.++.+
T Consensus       223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t  281 (505)
T KOG3207|consen  223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST  281 (505)
T ss_pred             cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence            9999999988533221  1222478888888887622  1  23345677777776665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.34  E-value=8e-08  Score=89.12  Aligned_cols=262  Identities=18%  Similarity=0.196  Sum_probs=138.6

Q ss_pred             eeEEEEEEEeeCChhhHHHHHHHHHh--CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCC
Q 036097          110 VEKLRFKASFLDDSELADRCVCYAIE--STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLP  187 (481)
Q Consensus       110 l~~l~l~~~~~~~~~~~~~~~~~~~~--~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~  187 (481)
                      +.++.+...  .-+...++|+.....  +.+++.+++..+......++|..+..+                 ......+|
T Consensus        32 ~~~l~lsgn--t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l-----------------~~aL~~~~   92 (382)
T KOG1909|consen   32 LTKLDLSGN--TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKML-----------------SKALLGCP   92 (382)
T ss_pred             eEEEeccCC--chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHH-----------------HHHHhcCC
Confidence            666666532  235667788877654  356666665543233333444322110                 01234556


Q ss_pred             cceEEEecceecCh---HHHHHHhcCCCccceeEeeeecCc-ceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEc
Q 036097          188 SLRKLRLAQVRASD---QVIENLVAGCPLIEDLIFEFCEGL-KSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVV  263 (481)
Q Consensus       188 ~L~~L~L~~~~~~~---~~l~~l~~~~p~Le~L~l~~~~~~-~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~  263 (481)
                      +|++|+|++|-+..   ..+..++++|..|++|.+.+|.-- ..-...+ .-|..|..+      ...-+.|+|+.+..+
T Consensus        93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~-~al~~l~~~------kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG-RALFELAVN------KKAASKPKLRVFICG  165 (382)
T ss_pred             ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH-HHHHHHHHH------hccCCCcceEEEEee
Confidence            77777777776543   677888899999999999988311 0000000 001111000      001123455555554


Q ss_pred             CC---CCC---CceeccCCCCCcEEEEE---echhh---hHHhhhcCCcccEEEeccccccc----ccccccccCCcccE
Q 036097          264 SP---LPS---GKINEVSCKNLKSLFLC---ITSVV---DETLSYHITRLVVLECLGLIVCF----ELQNIKISSPSLKR  327 (481)
Q Consensus       264 ~~---~~~---~~~~~~~~~~L~~L~l~---~~~~~---~~~~~~~~~~L~~L~L~~~~~c~----~l~~l~~~~~~L~~  327 (481)
                      .+   +++   ....+..++.|+.+.+.   |....   +...+.+||+|+.|+|.+|....    .+.......+.|+.
T Consensus       166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE  245 (382)
T ss_pred             ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence            44   111   11234555667777666   33322   23445778888888888753211    11111223467888


Q ss_pred             EEecCCCCccc---------ccccCCCcceeEecccccCCcchhhhhc---cCCCccEEEEeeChh--hHHHHHHHHhhc
Q 036097          328 LEIFKCTKLAA---------VEIETPNLSKCKYNGGVVPFSSSTALKL---LETDLNLYTINFDPQ--WYVKFIELIAKF  393 (481)
Q Consensus       328 L~l~~c~~l~~---------~~~~~p~L~~L~~~~~~~~~~~~~~l~~---~~~~L~~l~l~~~~~--~~~~~~~~~~~l  393 (481)
                      |++++|. +++         +....|+|+.+.+.++.+......++..   ..|.|++|.++.+..  -.+.+..+...+
T Consensus       246 l~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~  324 (382)
T KOG1909|consen  246 LNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKF  324 (382)
T ss_pred             ecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhc
Confidence            8888875 221         4455788888888888776543332211   468888888877653  223344444555


Q ss_pred             cccee
Q 036097          394 HQWSK  398 (481)
Q Consensus       394 ~~L~~  398 (481)
                      +....
T Consensus       325 ~~~~~  329 (382)
T KOG1909|consen  325 DTAHV  329 (382)
T ss_pred             ccccc
Confidence            43333

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.34  E-value=1.5e-06  Score=92.42  Aligned_cols=115  Identities=14%  Similarity=0.123  Sum_probs=68.4

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      .+..+|++...    ....+|..+.  ++|+.|+|++|.+..+|..   .+++|++|++++|.+..  +..-  -.++|+
T Consensus       178 ~~~~~L~L~~~----~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~---l~~nL~~L~Ls~N~Lts--LP~~--l~~~L~  244 (754)
T PRK15370        178 NNKTELRLKIL----GLTTIPACIP--EQITTLILDNNELKSLPEN---LQGNIKTLYANSNQLTS--IPAT--LPDTIQ  244 (754)
T ss_pred             cCceEEEeCCC----CcCcCCcccc--cCCcEEEecCCCCCcCChh---hccCCCEEECCCCcccc--CChh--hhcccc
Confidence            45666766654    4445665542  5788999998888766532   23588888888887653  1111  124688


Q ss_pred             eeEeeeecCcceEeecCCCCCcEEEEccCCCCceEEE-ecCCccEEEEcCC
Q 036097          216 DLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNI-NALNGHSITVVSP  265 (481)
Q Consensus       216 ~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~-~~p~L~~L~l~~~  265 (481)
                      .|++++|. +..+...-..+|+.|+++++. +..+.. -.++|+.|+++++
T Consensus       245 ~L~Ls~N~-L~~LP~~l~s~L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N  293 (754)
T PRK15370        245 EMELSINR-ITELPERLPSALQSLDLFHNK-ISCLPENLPEELRYLSVYDN  293 (754)
T ss_pred             EEECcCCc-cCcCChhHhCCCCEEECcCCc-cCccccccCCCCcEEECCCC
Confidence            88888774 222211112567888887654 222221 1246777777776

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.30  E-value=7.5e-08  Score=99.65  Aligned_cols=79  Identities=16%  Similarity=0.140  Sum_probs=40.3

Q ss_pred             CeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccce
Q 036097          137 TVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIED  216 (481)
Q Consensus       137 ~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  216 (481)
                      .++.|.++.+    ....+|....+..+|++|.|.++.....| .....+.+|++|+++.+.+....  ..+..+..++.
T Consensus        69 ~L~~ln~s~n----~i~~vp~s~~~~~~l~~lnL~~n~l~~lP-~~~~~lknl~~LdlS~N~f~~~P--l~i~~lt~~~~  141 (1081)
T KOG0618|consen   69 HLRQLNLSRN----YIRSVPSSCSNMRNLQYLNLKNNRLQSLP-ASISELKNLQYLDLSFNHFGPIP--LVIEVLTAEEE  141 (1081)
T ss_pred             HHhhcccchh----hHhhCchhhhhhhcchhheeccchhhcCc-hhHHhhhcccccccchhccCCCc--hhHHhhhHHHH
Confidence            4444444443    33444555555566666666666553333 24445566666666666554311  12344555555


Q ss_pred             eEeeee
Q 036097          217 LIFEFC  222 (481)
Q Consensus       217 L~l~~~  222 (481)
                      +..+++
T Consensus       142 ~~~s~N  147 (1081)
T KOG0618|consen  142 LAASNN  147 (1081)
T ss_pred             Hhhhcc
Confidence            555555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.29  E-value=6.8e-07  Score=94.90  Aligned_cols=243  Identities=14%  Similarity=0.086  Sum_probs=137.3

Q ss_pred             CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEEc
Q 036097          163 ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIK  242 (481)
Q Consensus       163 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~  242 (481)
                      .+...|+++++.+..+|...   .+.|+.|+|++|.+..  +...  ..++|++|++++|. +..+.....++|+.|+++
T Consensus       178 ~~~~~L~L~~~~LtsLP~~I---p~~L~~L~Ls~N~Lts--LP~~--l~~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls  249 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACI---PEQITTLILDNNELKS--LPEN--LQGNIKTLYANSNQ-LTSIPATLPDTIQEMELS  249 (754)
T ss_pred             cCceEEEeCCCCcCcCCccc---ccCCcEEEecCCCCCc--CChh--hccCCCEEECCCCc-cccCChhhhccccEEECc
Confidence            45788999998876665321   3579999999998753  2211  13589999999874 443322222689999999


Q ss_pred             cCCCCceEEE-ecCCccEEEEcCC-CCCCceeccCCCCCcEEEEEechhhhHHhhhc-CCcccEEEeccccccccccccc
Q 036097          243 GGREAEEVNI-NALNGHSITVVSP-LPSGKINEVSCKNLKSLFLCITSVVDETLSYH-ITRLVVLECLGLIVCFELQNIK  319 (481)
Q Consensus       243 ~~~~~~~~~~-~~p~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~L~~~~~c~~l~~l~  319 (481)
                      +|... .+.. -..+|+.|+++++ ....+..+  .++|+.|+++  +..+..+... .++|+.|++++|.+    +.++
T Consensus       250 ~N~L~-~LP~~l~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls--~N~Lt~LP~~lp~sL~~L~Ls~N~L----t~LP  320 (754)
T PRK15370        250 INRIT-ELPERLPSALQSLDLFHNKISCLPENL--PEELRYLSVY--DNSIRTLPAHLPSGITHLNVQSNSL----TALP  320 (754)
T ss_pred             CCccC-cCChhHhCCCCEEECcCCccCcccccc--CCCCcEEECC--CCccccCcccchhhHHHHHhcCCcc----ccCC
Confidence            88621 2211 1247899998877 22222222  3578888865  1112222111 23577777777432    2222


Q ss_pred             c-cCCcccEEEecCCCCccccccc-CCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcc-cc
Q 036097          320 I-SSPSLKRLEIFKCTKLAAVEIE-TPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFH-QW  396 (481)
Q Consensus       320 ~-~~~~L~~L~l~~c~~l~~~~~~-~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~-~L  396 (481)
                      . ..++|+.|++++|. +..++.. .++|+.|.++++.+.....    .-.++|+.|++..+.     +..++..++ .|
T Consensus       321 ~~l~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~L~~LP~----~lp~~L~~LdLs~N~-----Lt~LP~~l~~sL  390 (754)
T PRK15370        321 ETLPPGLKTLEAGENA-LTSLPASLPPELQVLDVSKNQITVLPE----TLPPTITTLDVSRNA-----LTNLPENLPAAL  390 (754)
T ss_pred             ccccccceeccccCCc-cccCChhhcCcccEEECCCCCCCcCCh----hhcCCcCEEECCCCc-----CCCCCHhHHHHH
Confidence            1 23578888888764 4433321 3578888888776553222    123567777776554     111222221 23


Q ss_pred             eeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecc
Q 036097          397 SKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISI  436 (481)
Q Consensus       397 ~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  436 (481)
                      +.   |++++|....+|+.+..- ...++++..|++..+.
T Consensus       391 ~~---LdLs~N~L~~LP~sl~~~-~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        391 QI---MQASRNNLVRLPESLPHF-RGEGPQPTRIIVEYNP  426 (754)
T ss_pred             HH---HhhccCCcccCchhHHHH-hhcCCCccEEEeeCCC
Confidence            33   777766666666542211 2223566777776654

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.28  E-value=5.2e-07  Score=58.14  Aligned_cols=34  Identities=38%  Similarity=0.679  Sum_probs=31.7

Q ss_pred             CCHHHHHHHHcCCChhHHHhhhcccccchhhhcc
Q 036097           20 LPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCT   53 (481)
Q Consensus        20 LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l~~~   53 (481)
                      ||+|++.+||++|+..|+++++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999986654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.20  E-value=7.4e-10  Score=103.97  Aligned_cols=197  Identities=16%  Similarity=0.095  Sum_probs=108.5

Q ss_pred             cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcce-Ee
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKS-IK  229 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~-l~  229 (481)
                      ....+|..++....++.|+.+++.+...|+ ...+.+.|+.++.+++.+..  +..-++.|-+|++|+..++.-... -.
T Consensus        79 ~l~~lp~aig~l~~l~~l~vs~n~ls~lp~-~i~s~~~l~~l~~s~n~~~e--l~~~i~~~~~l~dl~~~~N~i~slp~~  155 (565)
T KOG0472|consen   79 KLSQLPAAIGELEALKSLNVSHNKLSELPE-QIGSLISLVKLDCSSNELKE--LPDSIGRLLDLEDLDATNNQISSLPED  155 (565)
T ss_pred             hhhhCCHHHHHHHHHHHhhcccchHhhccH-HHhhhhhhhhhhccccceee--cCchHHHHhhhhhhhccccccccCchH
Confidence            556677777777777777777777765553 45566777777777765532  111123345566665554421100 01


Q ss_pred             ec-----------------------CCCCCcEEEEccCC--CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEE
Q 036097          230 LF-----------------------GRSKLRDIKIKGGR--EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFL  284 (481)
Q Consensus       230 i~-----------------------~~~~L~~L~l~~~~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  284 (481)
                      +.                       .+.+|++|+...+.  .+..-.-.+.+|+-|++..+.-.+...|++|..|+++.+
T Consensus       156 ~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~  235 (565)
T KOG0472|consen  156 MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHV  235 (565)
T ss_pred             HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHh
Confidence            11                       14555555554432  111111123444445555553334447778888887775


Q ss_pred             Ee-chhhhH-HhhhcCCcccEEEeccccccccccccccc---CCcccEEEecCCCCcccccc--cCCCcceeEecccc
Q 036097          285 CI-TSVVDE-TLSYHITRLVVLECLGLIVCFELQNIKIS---SPSLKRLEIFKCTKLAAVEI--ETPNLSKCKYNGGV  355 (481)
Q Consensus       285 ~~-~~~~~~-~~~~~~~~L~~L~L~~~~~c~~l~~l~~~---~~~L~~L~l~~c~~l~~~~~--~~p~L~~L~~~~~~  355 (481)
                      .. .-+.++ ...++++++..|++.+|+    ++..+..   ..+|+.|++++. .++.++-  +.-+|+.|.+.|++
T Consensus       236 g~N~i~~lpae~~~~L~~l~vLDLRdNk----lke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnlhL~~L~leGNP  308 (565)
T KOG0472|consen  236 GENQIEMLPAEHLKHLNSLLVLDLRDNK----LKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNLHLKFLALEGNP  308 (565)
T ss_pred             cccHHHhhHHHHhcccccceeeeccccc----cccCchHHHHhhhhhhhcccCC-ccccCCcccccceeeehhhcCCc
Confidence            51 112232 345689999999999954    3333222   467889999984 4544332  22367777777755

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.11  E-value=5.7e-07  Score=77.85  Aligned_cols=101  Identities=24%  Similarity=0.340  Sum_probs=33.2

Q ss_pred             CeeEEEEEEeecCCcccccCCccc-CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          137 TVKELELHTILRGDRLYHLPQMVV-CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       137 ~l~~L~L~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      ++++|+|..+    ....+. .+. .+.+|+.|++++|.+.++.  ....+++|++|++++|.+++-. ..+...+|+|+
T Consensus        20 ~~~~L~L~~n----~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~   91 (175)
T PF14580_consen   20 KLRELNLRGN----QISTIE-NLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-C-HHHHHH-TT--
T ss_pred             cccccccccc----cccccc-chhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccc-cchHHhCCcCC
Confidence            5677888776    222232 233 4678999999999887664  4556889999999999885411 12234688999


Q ss_pred             eeEeeeec--CcceE-eecCCCCCcEEEEccCC
Q 036097          216 DLIFEFCE--GLKSI-KLFGRSKLRDIKIKGGR  245 (481)
Q Consensus       216 ~L~l~~~~--~~~~l-~i~~~~~L~~L~l~~~~  245 (481)
                      +|++++|.  .+..+ .+..+++|+.|++.+++
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence            99998773  22222 23345666666666554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.99  E-value=7e-06  Score=76.47  Aligned_cols=36  Identities=25%  Similarity=0.123  Sum_probs=18.7

Q ss_pred             ccCCCCCcEEEEE---ech---hhhHHhhhcCCcccEEEecc
Q 036097          273 EVSCKNLKSLFLC---ITS---VVDETLSYHITRLVVLECLG  308 (481)
Q Consensus       273 ~~~~~~L~~L~l~---~~~---~~~~~~~~~~~~L~~L~L~~  308 (481)
                      +..||+|++|+|+   ++.   ..+..++.++..|++|.|.+
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N  129 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNN  129 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhc
Confidence            3455566666655   322   22334455566666666655

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.96  E-value=2.2e-07  Score=77.72  Aligned_cols=137  Identities=18%  Similarity=0.144  Sum_probs=65.8

Q ss_pred             cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEee
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKL  230 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i  230 (481)
                      ....+|+.+..+.+|+.|+++++.+.+.| +...++++|+.|++.-+++.  .+..-++++|.||.|+++++..-+.   
T Consensus        44 Kl~~vppnia~l~nlevln~~nnqie~lp-~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldltynnl~e~---  117 (264)
T KOG0617|consen   44 KLTVVPPNIAELKNLEVLNLSNNQIEELP-TSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDLTYNNLNEN---  117 (264)
T ss_pred             ceeecCCcHHHhhhhhhhhcccchhhhcC-hhhhhchhhhheecchhhhh--cCccccCCCchhhhhhccccccccc---
Confidence            34445555555666666666666665544 34455666666665544331  1222244556666666655421111   


Q ss_pred             cCCCCCcEEEEccCCCCceEEEecCCccEEEEcCC-CCCCceeccCCCCCcEEEEEech-hhhHHhhhcCCcccEEEecc
Q 036097          231 FGRSKLRDIKIKGGREAEEVNINALNGHSITVVSP-LPSGKINEVSCKNLKSLFLCITS-VVDETLSYHITRLVVLECLG  308 (481)
Q Consensus       231 ~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~L~~  308 (481)
                                     .+..-.+.+..|+-|.++.+ .+-.+..++.+.+|+.|.+.-.+ -.++.-++.+..|++|.+.+
T Consensus       118 ---------------~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  118 ---------------SLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             ---------------cCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc
Confidence                           11111233444555555554 33345556666666666544111 12223334455555555555

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.89  E-value=7.1e-07  Score=91.73  Aligned_cols=165  Identities=22%  Similarity=0.255  Sum_probs=97.3

Q ss_pred             hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCe-eccCCC----CCCCcCCCcceEEEeccee-cChHHHHHHh
Q 036097          135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGC-ILLEFP----GRNSVKLPSLRKLRLAQVR-ASDQVIENLV  208 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~----~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~  208 (481)
                      .++++.+.+..++ ......+-.....++.|+.|+++++ ......    ......+++|+.|++.++. ++|..+..+.
T Consensus       187 ~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  187 CPLLKRLSLSGCS-KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             CchhhHhhhcccc-cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            3667777777652 1111123344567888888888873 211111    1123456888888888886 7777787777


Q ss_pred             cCCCccceeEeeeecCcceEee----cCCCCCcEEEEccCCCCc-----eEEEecCCccEEEEcCCCCCCceeccCCCCC
Q 036097          209 AGCPLIEDLIFEFCEGLKSIKL----FGRSKLRDIKIKGGREAE-----EVNINALNGHSITVVSPLPSGKINEVSCKNL  279 (481)
Q Consensus       209 ~~~p~Le~L~l~~~~~~~~l~i----~~~~~L~~L~l~~~~~~~-----~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L  279 (481)
                      ..||+|++|.+.+|..++...+    ..|++|++|+++.|..+.     .+...+|+|+.|.+.+...        |+.+
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~--------c~~l  337 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG--------CPSL  337 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC--------CccH
Confidence            7888888888877775443222    135778888888776331     1223466666655444322        5555


Q ss_pred             cEEEEE----ec-hhhhHHhhhcCCcccEEEecc
Q 036097          280 KSLFLC----IT-SVVDETLSYHITRLVVLECLG  308 (481)
Q Consensus       280 ~~L~l~----~~-~~~~~~~~~~~~~L~~L~L~~  308 (481)
                      +.+.+.    .. +........++++++.+.+..
T Consensus       338 ~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~  371 (482)
T KOG1947|consen  338 TDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSY  371 (482)
T ss_pred             HHHHHHHhhccCchhHhHHHHhcCCCcchhhhhh
Confidence            555544    11 233344456677777777666

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.69  E-value=2.4e-06  Score=80.68  Aligned_cols=234  Identities=14%  Similarity=0.092  Sum_probs=123.9

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccC-CCCccEEEEcCeeccCCCCCCCcCCCcceEEEecc-eecChHHHHHHhcCCCc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVC-SETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQ-VRASDQVIENLVAGCPL  213 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~~p~  213 (481)
                      +...+++|+.+    ....+|...|. .++|++|+|++|.+..+.+..+.++++|.+|.+.+ +++.+ .....+.+...
T Consensus        67 ~~tveirLdqN----~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~-l~k~~F~gL~s  141 (498)
T KOG4237|consen   67 PETVEIRLDQN----QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD-LPKGAFGGLSS  141 (498)
T ss_pred             CcceEEEeccC----CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh-hhhhHhhhHHH
Confidence            45667777765    55677776654 78888888888888766666667788887777776 66644 11223444555


Q ss_pred             cceeEeeeec--CcceEeecCCCCCcEEEEccCC--CC-ceEEEecCCccEEEEcCCC-------C-------CCceecc
Q 036097          214 IEDLIFEFCE--GLKSIKLFGRSKLRDIKIKGGR--EA-EEVNINALNGHSITVVSPL-------P-------SGKINEV  274 (481)
Q Consensus       214 Le~L~l~~~~--~~~~l~i~~~~~L~~L~l~~~~--~~-~~~~~~~p~L~~L~l~~~~-------~-------~~~~~~~  274 (481)
                      |+.|.+.-|.  ....-.+..+++|..|.+.++.  .+ ........+++.+.+..+.       .       ..+..++
T Consensus       142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets  221 (498)
T KOG4237|consen  142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS  221 (498)
T ss_pred             HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence            6666655432  1111112234677777766653  11 0011112222222221110       0       0000011


Q ss_pred             CCC----------------------CCcEE--EEE----echhhhHHhhhcCCcccEEEecccccccccccccccCCccc
Q 036097          275 SCK----------------------NLKSL--FLC----ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLK  326 (481)
Q Consensus       275 ~~~----------------------~L~~L--~l~----~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~  326 (481)
                      .+.                      .++.+  .+.    ........-+..+|+|++|++++|++...-...--....++
T Consensus       222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~  301 (498)
T KOG4237|consen  222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ  301 (498)
T ss_pred             cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence            000                      01111  000    11112234467899999999999765332222223346788


Q ss_pred             EEEecCCCCccc----ccccCCCcceeEecccccCCcchhhhhccCCCccEEEE
Q 036097          327 RLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTI  376 (481)
Q Consensus       327 ~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l  376 (481)
                      +|.+... .+..    +..+...|++|+++|+.++.....++. ...+|..+.+
T Consensus       302 eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~-~~~~l~~l~l  353 (498)
T KOG4237|consen  302 ELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ-TLFSLSTLNL  353 (498)
T ss_pred             hhhcCcc-hHHHHHHHhhhccccceeeeecCCeeEEEeccccc-ccceeeeeeh
Confidence            8888763 3443    455667899999999877654443333 5566777776

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.68  E-value=1.2e-05  Score=69.64  Aligned_cols=79  Identities=18%  Similarity=0.233  Sum_probs=20.1

Q ss_pred             cCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh-HHHHHHhcCCCccceeEeeeecCcceEe--e-cCCCC
Q 036097          160 VCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD-QVIENLVAGCPLIEDLIFEFCEGLKSIK--L-FGRSK  235 (481)
Q Consensus       160 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~Le~L~l~~~~~~~~l~--i-~~~~~  235 (481)
                      .++.+++.|+|.++.+..+.. ....+.+|+.|+|++|.+.. +.    +..++.|++|++++|. +..+.  + .++++
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~----l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~   89 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLEG----LPGLPRLKTLDLSNNR-ISSISEGLDKNLPN   89 (175)
T ss_dssp             --------------------S---TT-TT--EEE-TTS--S--TT--------TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             ccccccccccccccccccccc-hhhhhcCCCEEECCCCCCccccC----ccChhhhhhcccCCCC-CCccccchHHhCCc
Confidence            356678999999998866542 22357889999999988754 32    3456778888887764 22221  1 12455


Q ss_pred             CcEEEEccC
Q 036097          236 LRDIKIKGG  244 (481)
Q Consensus       236 L~~L~l~~~  244 (481)
                      |+.|.++++
T Consensus        90 L~~L~L~~N   98 (175)
T PF14580_consen   90 LQELYLSNN   98 (175)
T ss_dssp             --EEE-TTS
T ss_pred             CCEEECcCC
Confidence            555555444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.55  E-value=3.1e-05  Score=54.72  Aligned_cols=59  Identities=22%  Similarity=0.245  Sum_probs=34.0

Q ss_pred             CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeee
Q 036097          163 ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFC  222 (481)
Q Consensus       163 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~  222 (481)
                      ++|++|++++|.+..++......+++|++|+++++.+..- ....+..+++|++|++++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence            3566666666666655554555666666666666655321 1122455666666666654

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.53  E-value=1.1e-05  Score=82.87  Aligned_cols=39  Identities=21%  Similarity=0.323  Sum_probs=31.3

Q ss_pred             ccCCCCCHHHHHHHHcCCChhHHHhhhcccccchhhhcc
Q 036097           15 DRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCT   53 (481)
Q Consensus        15 d~i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l~~~   53 (481)
                      +.....|++....++...+..+......++++|......
T Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (482)
T KOG1947|consen   43 RFTLLLPDELLADLLLKLVVLDRESVSLVTRLWLTLLGS   81 (482)
T ss_pred             eeeeccccchhhhcccccccccccccchhhhhhhhhhhh
Confidence            456678888899998888888888888999999865443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.52  E-value=7.9e-05  Score=52.59  Aligned_cols=60  Identities=25%  Similarity=0.335  Sum_probs=49.8

Q ss_pred             CCeeEEEEEEeecCCcccccCCccc-CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceec
Q 036097          136 STVKELELHTILRGDRLYHLPQMVV-CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRA  199 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  199 (481)
                      +++++|++..+    ....+|...+ .+++|++|++++|.+..+++.....+++|++|++++|.+
T Consensus         1 p~L~~L~l~~n----~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNN----KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSS----TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCC----CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46788888876    5667786554 599999999999999888777788999999999998864

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.46  E-value=4.1e-05  Score=72.61  Aligned_cols=82  Identities=17%  Similarity=0.220  Sum_probs=52.4

Q ss_pred             CCeeEEEEEEeecCCccccc-CCcccCCCCccEEEEcC-eeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097          136 STVKELELHTILRGDRLYHL-PQMVVCSETVNVLDLFG-CILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL  213 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  213 (481)
                      ++++.|+|+.+    ....+ |..+..+++|..|-+-+ +++.+++...+.++..|+.|.+.-+++. ......+...++
T Consensus        91 ~~LRrLdLS~N----~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~  165 (498)
T KOG4237|consen   91 HRLRRLDLSKN----NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPS  165 (498)
T ss_pred             hhhceeccccc----chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhh
Confidence            68999999886    22233 33444577777777766 8888887666667777777777666552 333444555566


Q ss_pred             cceeEeeee
Q 036097          214 IEDLIFEFC  222 (481)
Q Consensus       214 Le~L~l~~~  222 (481)
                      |..|.+-++
T Consensus       166 l~lLslyDn  174 (498)
T KOG4237|consen  166 LSLLSLYDN  174 (498)
T ss_pred             cchhcccch
Confidence            666655543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.41  E-value=3.6e-05  Score=81.23  Aligned_cols=144  Identities=17%  Similarity=0.174  Sum_probs=79.4

Q ss_pred             CCccEEEEcCeeccC--CCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcce-EeecCCCCCcEE
Q 036097          163 ETVNVLDLFGCILLE--FPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKS-IKLFGRSKLRDI  239 (481)
Q Consensus       163 ~~L~~L~L~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~-l~i~~~~~L~~L  239 (481)
                      .+|++|+++|.....  .+.....-+|.|++|.+.+..+..+.+..+..++|+|..|+++++. +.. ..++.+++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHH
Confidence            567777777754321  1111233578888888888877666677778888888888888763 222 234445666666


Q ss_pred             EEccCCCCc--e--EEEecCCccEEEEcCC-CCCCc-------eeccCCCCCcEEEEE---echhhhHHhhhcCCcccEE
Q 036097          240 KIKGGREAE--E--VNINALNGHSITVVSP-LPSGK-------INEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVL  304 (481)
Q Consensus       240 ~l~~~~~~~--~--~~~~~p~L~~L~l~~~-~~~~~-------~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L  304 (481)
                      .+.+-....  .  --....+|+.|+++.. ....+       ..-..+|+|+.|+.+   ++.+.+..+....|+|+.+
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i  280 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI  280 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence            665432110  0  0123555666666554 11111       112335666666665   4445555555555555555


Q ss_pred             Eec
Q 036097          305 ECL  307 (481)
Q Consensus       305 ~L~  307 (481)
                      .+-
T Consensus       281 ~~~  283 (699)
T KOG3665|consen  281 AAL  283 (699)
T ss_pred             hhh
Confidence            443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.38  E-value=2.2e-05  Score=79.86  Aligned_cols=198  Identities=18%  Similarity=0.143  Sum_probs=117.2

Q ss_pred             ceeEEEEEEEeeCChhhHHHHHH-HHHhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCC-
Q 036097          109 SVEKLRFKASFLDDSELADRCVC-YAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKL-  186 (481)
Q Consensus       109 ~l~~l~l~~~~~~~~~~~~~~~~-~~~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~-  186 (481)
                      +++.|........|...+...-. .-+....+.+.+...  +.....=|-.++.+.+|++|.|.+|.+...-  +...+ 
T Consensus        56 ~~~~f~a~~s~~ads~vl~qLq~i~d~lqkt~~lkl~~~--pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~--GL~~lr  131 (1096)
T KOG1859|consen   56 PVDYFRAYVSDNADSRVLEQLQRILDFLQKTKVLKLLPS--PARDPTEPISIFPFRSLRVLELRGCDLSTAK--GLQELR  131 (1096)
T ss_pred             CCceeEEecCCcccchHHHHHHHHHHHHhhheeeeeccc--CCCCCCCCceeccccceeeEEecCcchhhhh--hhHHHH
Confidence            37887776553344333222211 112245666666554  2222222888999999999999999874321  11111 


Q ss_pred             --------------------------------CcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCC
Q 036097          187 --------------------------------PSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRS  234 (481)
Q Consensus       187 --------------------------------~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~  234 (481)
                                                      -.|.+.+.++|.+  ..++.-+.-.|.||.|+|+.|.--.--.+.-|+
T Consensus       132 ~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~  209 (1096)
T KOG1859|consen  132 HQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKFTKVDNLRRLP  209 (1096)
T ss_pred             HhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhhhhhHHHHhcc
Confidence                                            1222223333322  112222333577888888877422111334468


Q ss_pred             CCcEEEEccCC--CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccc
Q 036097          235 KLRDIKIKGGR--EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGL  309 (481)
Q Consensus       235 ~L~~L~l~~~~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~  309 (481)
                      +||+|+++.+.  .+..+....-.|..|.+.++.-.....+.++.+|+.|+++   +.+..-...+..+..|+.|.|.||
T Consensus       210 ~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  210 KLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             cccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence            99999998876  4444444444488888888865566678899999999988   444333344566778899999997


Q ss_pred             ccc
Q 036097          310 IVC  312 (481)
Q Consensus       310 ~~c  312 (481)
                      -+|
T Consensus       290 Pl~  292 (1096)
T KOG1859|consen  290 PLC  292 (1096)
T ss_pred             ccc
Confidence            654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.34  E-value=6.9e-05  Score=68.53  Aligned_cols=190  Identities=16%  Similarity=0.057  Sum_probs=120.5

Q ss_pred             hhHHHHHHHHH-hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChH
Q 036097          124 ELADRCVCYAI-ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQ  202 (481)
Q Consensus       124 ~~~~~~~~~~~-~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~  202 (481)
                      +..+.....+. ...+++++|..+. -....++...+.++|.|+.|+|++|.+.......+....+|++|.|.+..++=.
T Consensus        58 d~~gd~~~~~~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~  136 (418)
T KOG2982|consen   58 DNEGDVMLFGSSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWT  136 (418)
T ss_pred             CcchhHHHHHHHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChh
Confidence            33334333332 3578899988761 223344555556789999999999988554443445677999999998877657


Q ss_pred             HHHHHhcCCCccceeEeeeec----CcceEe--ecCCCCCcEEEEccCC-----CCceEEEecCCccEEEEcCC---CCC
Q 036097          203 VIENLVAGCPLIEDLIFEFCE----GLKSIK--LFGRSKLRDIKIKGGR-----EAEEVNINALNGHSITVVSP---LPS  268 (481)
Q Consensus       203 ~l~~l~~~~p~Le~L~l~~~~----~~~~l~--i~~~~~L~~L~l~~~~-----~~~~~~~~~p~L~~L~l~~~---~~~  268 (481)
                      ....++...|.+++|+++.+.    +++.-.  -.+ +.++.|+...|.     ....+....||+.++.+..+   ...
T Consensus       137 ~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s-~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s  215 (418)
T KOG2982|consen  137 QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS-TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTES  215 (418)
T ss_pred             hhhhhhhcchhhhhhhhccchhhhhccccccccccc-hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchh
Confidence            777778889999999998773    122211  123 677888888876     22233345788888877766   222


Q ss_pred             CceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccccccccc
Q 036097          269 GKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFEL  315 (481)
Q Consensus       269 ~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l  315 (481)
                      .......+|.+-.|.+.   +..=.-..-+..+|.|..|.+..|-+-..+
T Consensus       216 ~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  216 SEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             hcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            23344455555566655   222222344578889999888886543333

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.30  E-value=6.2e-05  Score=79.47  Aligned_cols=98  Identities=19%  Similarity=0.131  Sum_probs=58.1

Q ss_pred             CCccceeEeeeecCcce-E--eecC-CCCCcEEEEccCC----CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEE
Q 036097          211 CPLIEDLIFEFCEGLKS-I--KLFG-RSKLRDIKIKGGR----EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSL  282 (481)
Q Consensus       211 ~p~Le~L~l~~~~~~~~-l--~i~~-~~~L~~L~l~~~~----~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L  282 (481)
                      -.+|++|++++...+.. +  .++. +|+|++|.+.+-.    ....+-.+.|||.+|++++..-.....++.+++|+.|
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L  200 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL  200 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence            35778888876533211 1  1222 5888888777643    2223345677888888887755555667777777777


Q ss_pred             EEE---echhhhHHhhhcCCcccEEEecc
Q 036097          283 FLC---ITSVVDETLSYHITRLVVLECLG  308 (481)
Q Consensus       283 ~l~---~~~~~~~~~~~~~~~L~~L~L~~  308 (481)
                      .+.   +....-..-+.++.+|+.|+++.
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~  229 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISR  229 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccc
Confidence            766   33322222234577777777776

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.26  E-value=7.2e-05  Score=81.08  Aligned_cols=80  Identities=19%  Similarity=0.166  Sum_probs=35.6

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      +.++.|+|+.+   ....++|..+..+-+|++|++++..+...| .....++.|.+|++..+... ..+..+....++|+
T Consensus       571 ~~LrVLDLs~~---~~l~~LP~~I~~Li~LryL~L~~t~I~~LP-~~l~~Lk~L~~Lnl~~~~~l-~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  571 PLLRVLDLSGN---SSLSKLPSSIGELVHLRYLDLSDTGISHLP-SGLGNLKKLIYLNLEVTGRL-ESIPGILLELQSLR  645 (889)
T ss_pred             cceEEEECCCC---CccCcCChHHhhhhhhhcccccCCCccccc-hHHHHHHhhheecccccccc-ccccchhhhccccc
Confidence            44455555442   233455555555555555555555544333 23344445555555444221 11122233345555


Q ss_pred             eeEee
Q 036097          216 DLIFE  220 (481)
Q Consensus       216 ~L~l~  220 (481)
                      +|.+-
T Consensus       646 ~L~l~  650 (889)
T KOG4658|consen  646 VLRLP  650 (889)
T ss_pred             EEEee
Confidence            55544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=97.19  E-value=8.4e-06  Score=68.36  Aligned_cols=104  Identities=13%  Similarity=0.139  Sum_probs=75.0

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      .+++.|++.++    ...++|..+.++++|+.|+++-+++...| .++.++|.|+.|+|.++.+.+..+..-+..+..|+
T Consensus        56 ~nlevln~~nn----qie~lp~~issl~klr~lnvgmnrl~~lp-rgfgs~p~levldltynnl~e~~lpgnff~m~tlr  130 (264)
T KOG0617|consen   56 KNLEVLNLSNN----QIEELPTSISSLPKLRILNVGMNRLNILP-RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLR  130 (264)
T ss_pred             hhhhhhhcccc----hhhhcChhhhhchhhhheecchhhhhcCc-cccCCCchhhhhhccccccccccCCcchhHHHHHH
Confidence            57888888776    67899999999999999999999885444 58889999999999999887755443344456677


Q ss_pred             eeEeeeecC-cceEeecCCCCCcEEEEccC
Q 036097          216 DLIFEFCEG-LKSIKLFGRSKLRDIKIKGG  244 (481)
Q Consensus       216 ~L~l~~~~~-~~~l~i~~~~~L~~L~l~~~  244 (481)
                      -|++++++. +-.-.++.+.+|+.|.+.++
T Consensus       131 alyl~dndfe~lp~dvg~lt~lqil~lrdn  160 (264)
T KOG0617|consen  131 ALYLGDNDFEILPPDVGKLTNLQILSLRDN  160 (264)
T ss_pred             HHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence            777777641 11123444455555555544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.19  E-value=8.4e-05  Score=67.99  Aligned_cols=195  Identities=13%  Similarity=0.041  Sum_probs=112.1

Q ss_pred             HhCCeeEEEEEEeecCCc-----ccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh-H-----
Q 036097          134 IESTVKELELHTILRGDR-----LYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD-Q-----  202 (481)
Q Consensus       134 ~~~~l~~L~L~~~~~~~~-----~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~-----  202 (481)
                      ++..+..|.++..-.+.+     ..-+|..+..+.+|..+.++.|.-..+-+ ....-|.|.++......+.+ .     
T Consensus       180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~-~~~~kptl~t~~v~~s~~~~~~~l~pe  258 (490)
T KOG1259|consen  180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVD-IELLKPTLQTICVHNTTIQDVPSLLPE  258 (490)
T ss_pred             hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheec-eeecCchhheeeeecccccccccccch
Confidence            345777777765422222     22345455567899999999887543321 12234677777766543322 0     


Q ss_pred             -HHH---------------HHhcCCCccceeEeeeecCcceE--eecCCCCCcEEEEccCCC--CceEEEecCCccEEEE
Q 036097          203 -VIE---------------NLVAGCPLIEDLIFEFCEGLKSI--KLFGRSKLRDIKIKGGRE--AEEVNINALNGHSITV  262 (481)
Q Consensus       203 -~l~---------------~l~~~~p~Le~L~l~~~~~~~~l--~i~~~~~L~~L~l~~~~~--~~~~~~~~p~L~~L~l  262 (481)
                       .+.               ..+-....|++++++++.- ..+  ++.-.|.++.|+++.+..  ... -...++|+.|++
T Consensus       259 ~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDL  336 (490)
T KOG1259|consen  259 TILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDL  336 (490)
T ss_pred             hhhcCccCCCCCccCCceEEecchHhhhhhccccccch-hhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeec
Confidence             000               0112345688888887741 111  222248899999988762  222 236789999999


Q ss_pred             cCC-CCCCceeccCCCCCcEEEEEechhhhH--HhhhcCCcccEEEeccccc--ccccccccccCCcccEEEecCCC
Q 036097          263 VSP-LPSGKINEVSCKNLKSLFLCITSVVDE--TLSYHITRLVVLECLGLIV--CFELQNIKISSPSLKRLEIFKCT  334 (481)
Q Consensus       263 ~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~L~~~~~--c~~l~~l~~~~~~L~~L~l~~c~  334 (481)
                      +++ .......-..+-|+++|.++  ...+.  ..+..+-+|+.|++.+|+.  ...++. ....|.|+++.+.+.+
T Consensus       337 S~N~Ls~~~Gwh~KLGNIKtL~La--~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~-IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  337 SGNLLAECVGWHLKLGNIKTLKLA--QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNH-IGNLPCLETLRLTGNP  410 (490)
T ss_pred             ccchhHhhhhhHhhhcCEeeeehh--hhhHhhhhhhHhhhhheeccccccchhhHHHhcc-cccccHHHHHhhcCCC
Confidence            988 22223333456677788765  22222  2345677889999988643  111222 2346788888887755

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.16  E-value=0.00014  Score=66.65  Aligned_cols=63  Identities=11%  Similarity=0.165  Sum_probs=32.6

Q ss_pred             HHHHHhcCCCccceeEeeeecC------cce----EeecCCCCCcEEEEccCC--CCceEEEecCCccEEEEcCC
Q 036097          203 VIENLVAGCPLIEDLIFEFCEG------LKS----IKLFGRSKLRDIKIKGGR--EAEEVNINALNGHSITVVSP  265 (481)
Q Consensus       203 ~l~~l~~~~p~Le~L~l~~~~~------~~~----l~i~~~~~L~~L~l~~~~--~~~~~~~~~p~L~~L~l~~~  265 (481)
                      ++..++-.|.+|..|.++...+      +..    +.+..+++|+.+.++.|.  ....+....|.|.++.+...
T Consensus       173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s  247 (490)
T KOG1259|consen  173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNT  247 (490)
T ss_pred             chHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecc
Confidence            3444555566666666665422      111    112224667777777665  33444455566666655443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.97  E-value=0.0015  Score=60.04  Aligned_cols=177  Identities=12%  Similarity=0.077  Sum_probs=90.3

Q ss_pred             cCCCCCcEEEEE---ech-hhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccc-----ccccCC
Q 036097          274 VSCKNLKSLFLC---ITS-VVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA-----VEIETP  344 (481)
Q Consensus       274 ~~~~~L~~L~l~---~~~-~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~-----~~~~~p  344 (481)
                      ..++.++.+++.   +++ +.+..++.++|.|+.|+|+.|.+...+..++....+|+.|-+.+.. +.+     .....|
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDLP  146 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC-CChhhhhhhhhcch
Confidence            345566666665   444 4566777888888888888877766676666666788888877643 222     444556


Q ss_pred             CcceeEecccccCC--cchhhhhccCCCccEEEEeeChh-hHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCC
Q 036097          345 NLSKCKYNGGVVPF--SSSTALKLLETDLNLYTINFDPQ-WYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILP  421 (481)
Q Consensus       345 ~L~~L~~~~~~~~~--~~~~~l~~~~~~L~~l~l~~~~~-~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~  421 (481)
                      .++.|.++.+...-  ..-+|.+...+.+..+....|.. ......++-..|+++.+   +-+..+.......   +...
T Consensus       147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s---v~v~e~PlK~~s~---ek~s  220 (418)
T KOG2982|consen  147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS---VFVCEGPLKTESS---EKGS  220 (418)
T ss_pred             hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh---eeeecCcccchhh---cccC
Confidence            66666665542110  00111112223344444444431 11233455566777766   5554332221110   1123


Q ss_pred             CCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097          422 PPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       422 ~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                      .+++.+..|+|.......    +..++. |...|.|.-|.+
T Consensus       221 e~~p~~~~LnL~~~~ids----wasvD~-Ln~f~~l~dlRv  256 (418)
T KOG2982|consen  221 EPFPSLSCLNLGANNIDS----WASVDA-LNGFPQLVDLRV  256 (418)
T ss_pred             CCCCcchhhhhccccccc----HHHHHH-HcCCchhheeec
Confidence            334455566665544222    222332 344555555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.82  E-value=0.00028  Score=76.61  Aligned_cols=124  Identities=15%  Similarity=0.084  Sum_probs=76.9

Q ss_pred             cCCCCccEEEEcCee--ccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--eecCCCC
Q 036097          160 VCSETVNVLDLFGCI--LLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI--KLFGRSK  235 (481)
Q Consensus       160 ~~~~~L~~L~L~~~~--~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l--~i~~~~~  235 (481)
                      ..|++|++|-+.++.  +...+...+..+|.|+.|+|++|.-. ..++..++..-+|+.|++++.. +..+  .+..+.+
T Consensus       542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~  619 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKK  619 (889)
T ss_pred             CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhcccccCCC-ccccchHHHHHHh
Confidence            356789888888885  43444333567899999999986432 3444446667778888888653 3322  3344677


Q ss_pred             CcEEEEccCCCCceE---EEecCCccEEEEcCCC-CC---CceeccCCCCCcEEEEE
Q 036097          236 LRDIKIKGGREAEEV---NINALNGHSITVVSPL-PS---GKINEVSCKNLKSLFLC  285 (481)
Q Consensus       236 L~~L~l~~~~~~~~~---~~~~p~L~~L~l~~~~-~~---~~~~~~~~~~L~~L~l~  285 (481)
                      |.+|++..+..+..+   ...+++|++|.+.+.. ..   ....+..+.+|+.+...
T Consensus       620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             hheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            888888766533222   2347888888887763 22   22234555555555555

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.34  E-value=0.012  Score=57.75  Aligned_cols=9  Identities=11%  Similarity=-0.141  Sum_probs=5.4

Q ss_pred             cccEEEecc
Q 036097          300 RLVVLECLG  308 (481)
Q Consensus       300 ~L~~L~L~~  308 (481)
                      +|+.|.+..
T Consensus       178 SLk~L~ls~  186 (426)
T PRK15386        178 SLQSITLHI  186 (426)
T ss_pred             cCcEEEecc
Confidence            566666654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.26  E-value=0.0024  Score=63.84  Aligned_cols=144  Identities=17%  Similarity=0.155  Sum_probs=76.8

Q ss_pred             CCCCccEEEEcCeeccCCCCCCCcCC-CcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeec-CCCCCcE
Q 036097          161 CSETVNVLDLFGCILLEFPGRNSVKL-PSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLF-GRSKLRD  238 (481)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~-~~~~L~~  238 (481)
                      ....+..|++.++.+.++++ ....+ ++|+.|+++.+.+..  +..-+..+|.|+.|++.+|.-.+..... ..+.|+.
T Consensus       114 ~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~  190 (394)
T COG4886         114 ELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN  190 (394)
T ss_pred             cccceeEEecCCcccccCcc-ccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence            34567777777777766543 22233 277777777776633  2122556777777777776422221111 2366777


Q ss_pred             EEEccCCCCceEEE--ecC-CccEEEEcCC-CCCCceeccCCCCCcEEEEE-echhhhHHhhhcCCcccEEEecc
Q 036097          239 IKIKGGREAEEVNI--NAL-NGHSITVVSP-LPSGKINEVSCKNLKSLFLC-ITSVVDETLSYHITRLVVLECLG  308 (481)
Q Consensus       239 L~l~~~~~~~~~~~--~~p-~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~L~~L~L~~  308 (481)
                      |.++++. +..+..  ..+ .|+++.++++ .......+..+.++..+.+. .....+...+..+++++.|++++
T Consensus       191 L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~  264 (394)
T COG4886         191 LDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSN  264 (394)
T ss_pred             eeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccc
Confidence            7776664 111111  233 3667766666 33444445555555555533 11111134455666666666666

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.15  E-value=0.013  Score=57.56  Aligned_cols=139  Identities=14%  Similarity=0.210  Sum_probs=75.1

Q ss_pred             ccCCCCCcEEEEEechhhhHHhhhcCCcccEEEeccccccccccccccc-CCcccEEEecCCCCcccccccCCCcceeEe
Q 036097          273 EVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNIKIS-SPSLKRLEIFKCTKLAAVEIETPNLSKCKY  351 (481)
Q Consensus       273 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~-~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~  351 (481)
                      +..|.+++.|+++  ...+..+..-.++|+.|.+++   |.+++.++.. .++|+.|.+.+|.++..++   ++|++|.+
T Consensus        48 ~~~~~~l~~L~Is--~c~L~sLP~LP~sLtsL~Lsn---c~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP---~sLe~L~L  119 (426)
T PRK15386         48 IEEARASGRLYIK--DCDIESLPVLPNELTEITIEN---CNNLTTLPGSIPEGLEKLTVCHCPEISGLP---ESVRSLEI  119 (426)
T ss_pred             HHHhcCCCEEEeC--CCCCcccCCCCCCCcEEEccC---CCCcccCCchhhhhhhheEccCcccccccc---cccceEEe
Confidence            4567888888866  223333332233689999988   8888766543 3589999999887665443   46777777


Q ss_pred             cccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEE
Q 036097          352 NGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLN  431 (481)
Q Consensus       352 ~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~  431 (481)
                      .+...... .    .-.++|+.|.+.....  ......+..+|  .+|+.|.++++....+|+.     +|  .+|++|.
T Consensus       120 ~~n~~~~L-~----~LPssLk~L~I~~~n~--~~~~~lp~~LP--sSLk~L~Is~c~~i~LP~~-----LP--~SLk~L~  183 (426)
T PRK15386        120 KGSATDSI-K----NVPNGLTSLSINSYNP--ENQARIDNLIS--PSLKTLSLTGCSNIILPEK-----LP--ESLQSIT  183 (426)
T ss_pred             CCCCCccc-c----cCcchHhheecccccc--ccccccccccC--CcccEEEecCCCcccCccc-----cc--ccCcEEE
Confidence            65332211 1    1234566665522110  00000111121  2344477764434444432     33  4777777


Q ss_pred             EEec
Q 036097          432 FSIS  435 (481)
Q Consensus       432 l~~~  435 (481)
                      ++.+
T Consensus       184 ls~n  187 (426)
T PRK15386        184 LHIE  187 (426)
T ss_pred             eccc
Confidence            7653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.12  E-value=0.0034  Score=40.73  Aligned_cols=36  Identities=28%  Similarity=0.409  Sum_probs=20.0

Q ss_pred             CccEEEEcCeeccCCCCCCCcCCCcceEEEecceecC
Q 036097          164 TVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRAS  200 (481)
Q Consensus       164 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  200 (481)
                      +|++|++++|.+.++++ ....+++|+.|++++|.++
T Consensus         2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCC
Confidence            56666666666655442 2445666666666666554

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.78  E-value=0.017  Score=50.40  Aligned_cols=61  Identities=20%  Similarity=0.209  Sum_probs=39.0

Q ss_pred             CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh-HHHHHHhcCCCccceeEeeee
Q 036097          161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD-QVIENLVAGCPLIEDLIFEFC  222 (481)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~Le~L~l~~~  222 (481)
                      ..+.|..|.|++|++..+.+....-+|+|+.|.|.+|.+.. +.+.. +..||.|++|.+-++
T Consensus        62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~N  123 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGN  123 (233)
T ss_pred             CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCC
Confidence            45677777777777766654444456777777777776644 33333 345777777776655

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=95.72  E-value=0.0036  Score=58.25  Aligned_cols=36  Identities=31%  Similarity=0.612  Sum_probs=34.7

Q ss_pred             CccCCCCC----HHHHHHHHcCCChhHHHhhhcccccchh
Q 036097           14 ADRISALP----EPLLQHIMSFLPSKDAVRTRLLSKIWEK   49 (481)
Q Consensus        14 ~d~i~~LP----d~iL~~Ils~L~~~d~~r~~~vskrW~~   49 (481)
                      .|.|+.||    |+|-..||+||+..+++.+.+|||+|++
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r  111 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKR  111 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHH
Confidence            68899999    9999999999999999999999999996

>PLN03150 hypothetical protein; Provisional

Probab=95.66  E-value=0.0083  Score=63.53  Aligned_cols=81  Identities=20%  Similarity=0.136  Sum_probs=60.2

Q ss_pred             CccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcce--EeecCCCCCcEEEE
Q 036097          164 TVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKS--IKLFGRSKLRDIKI  241 (481)
Q Consensus       164 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~--l~i~~~~~L~~L~l  241 (481)
                      .++.|+|+++.+....+.....+++|+.|+|++|.+... +...+..+++|+.|++++|.....  -.+..+++|+.|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            378899999888655445566789999999999987542 333367899999999998853322  23556799999999


Q ss_pred             ccCC
Q 036097          242 KGGR  245 (481)
Q Consensus       242 ~~~~  245 (481)
                      ++|.
T Consensus       498 s~N~  501 (623)
T PLN03150        498 NGNS  501 (623)
T ss_pred             cCCc
Confidence            8875

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.51  E-value=0.021  Score=52.08  Aligned_cols=193  Identities=16%  Similarity=0.104  Sum_probs=116.0

Q ss_pred             CCCCccEEEEcCeeccCCCC----CCCcCCCcceEEEecceec---Ch------HHHHHHhcCCCccceeEeeeec-Ccc
Q 036097          161 CSETVNVLDLFGCILLEFPG----RNSVKLPSLRKLRLAQVRA---SD------QVIENLVAGCPLIEDLIFEFCE-GLK  226 (481)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~----~~~~~~~~L~~L~L~~~~~---~~------~~l~~l~~~~p~Le~L~l~~~~-~~~  226 (481)
                      ....++.++||||.+..-..    ....+-++|+..+++....   .+      ..+...+..||+|+..+++.|. +.+
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            46789999999998732100    1223457788888776522   12      2233446689999999999883 222


Q ss_pred             eE-----eecCCCCCcEEEEccCC-CCc---eE------------EEecCCccEEEEcCC---CCCC---ceeccCCCCC
Q 036097          227 SI-----KLFGRSKLRDIKIKGGR-EAE---EV------------NINALNGHSITVVSP---LPSG---KINEVSCKNL  279 (481)
Q Consensus       227 ~l-----~i~~~~~L~~L~l~~~~-~~~---~~------------~~~~p~L~~L~l~~~---~~~~---~~~~~~~~~L  279 (481)
                      ..     -+++-..|++|.+++|. ++.   .+            ..+.|.|+++....+   .++.   ...+..-.+|
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l  187 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL  187 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence            21     12333889999999996 111   11            136789999988776   2221   1233444788


Q ss_pred             cEEEEE---echhhhHHh----hhcCCcccEEEecccccccc----cccccccCCcccEEEecCCCCc----cc-----c
Q 036097          280 KSLFLC---ITSVVDETL----SYHITRLVVLECLGLIVCFE----LQNIKISSPSLKRLEIFKCTKL----AA-----V  339 (481)
Q Consensus       280 ~~L~l~---~~~~~~~~~----~~~~~~L~~L~L~~~~~c~~----l~~l~~~~~~L~~L~l~~c~~l----~~-----~  339 (481)
                      +.+.+.   |....+..+    ...+.+|+.|+|.+|.....    +......-+.|+.|.+..|---    ..     -
T Consensus       188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~  267 (388)
T COG5238         188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN  267 (388)
T ss_pred             eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence            999887   555544433    36789999999998532110    1111111356889999888511    11     1


Q ss_pred             cccCCCcceeEecc
Q 036097          340 EIETPNLSKCKYNG  353 (481)
Q Consensus       340 ~~~~p~L~~L~~~~  353 (481)
                      ....|+|..|...-
T Consensus       268 e~~~p~l~~L~~~Y  281 (388)
T COG5238         268 EKFVPNLMPLPGDY  281 (388)
T ss_pred             hhcCCCccccccch
Confidence            23357888776543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.38  E-value=0.0015  Score=59.08  Aligned_cols=89  Identities=20%  Similarity=0.186  Sum_probs=53.3

Q ss_pred             cCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh-HHHHHHhcCCCccceeEeeeecC--cceE-ee
Q 036097          155 LPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD-QVIENLVAGCPLIEDLIFEFCEG--LKSI-KL  230 (481)
Q Consensus       155 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~Le~L~l~~~~~--~~~l-~i  230 (481)
                      +....-....|+.|++.++.+...  .....+|+|++|.++.+.... ..+.-++..||+|.+|.+++|..  ++.+ .+
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence            443334456677777777765433  234457788888888884432 45555567788888888887742  1111 12


Q ss_pred             cCCCCCcEEEEccCC
Q 036097          231 FGRSKLRDIKIKGGR  245 (481)
Q Consensus       231 ~~~~~L~~L~l~~~~  245 (481)
                      ..+++|+.|.+.+|.
T Consensus       113 ~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen  113 KELENLKSLDLFNCS  127 (260)
T ss_pred             hhhcchhhhhcccCC
Confidence            224556666666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.30  E-value=0.045  Score=47.80  Aligned_cols=78  Identities=23%  Similarity=0.279  Sum_probs=53.1

Q ss_pred             CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh--HHHHHHhcCCCccceeEeeeecC--cceE-eecCCCCCc
Q 036097          163 ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD--QVIENLVAGCPLIEDLIFEFCEG--LKSI-KLFGRSKLR  237 (481)
Q Consensus       163 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~--~~l~~l~~~~p~Le~L~l~~~~~--~~~l-~i~~~~~L~  237 (481)
                      .....++|++|.+...+  ...++++|.+|.|..|.++.  ..+.   ...|+|..|.+.+++-  +.++ .+.+||+|+
T Consensus        42 d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILTNNSIQELGDLDPLASCPKLE  116 (233)
T ss_pred             cccceecccccchhhcc--cCCCccccceEEecCCcceeeccchh---hhccccceEEecCcchhhhhhcchhccCCccc
Confidence            45667788888775443  45578899999999998865  4443   3468899999988752  2222 345567777


Q ss_pred             EEEEccCC
Q 036097          238 DIKIKGGR  245 (481)
Q Consensus       238 ~L~l~~~~  245 (481)
                      .|.+-++.
T Consensus       117 ~Ltll~Np  124 (233)
T KOG1644|consen  117 YLTLLGNP  124 (233)
T ss_pred             eeeecCCc
Confidence            77776664

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.19  E-value=0.00083  Score=61.07  Aligned_cols=97  Identities=18%  Similarity=0.141  Sum_probs=67.9

Q ss_pred             CCCcEEEEccCC-CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccc
Q 036097          234 SKLRDIKIKGGR-EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGL  309 (481)
Q Consensus       234 ~~L~~L~l~~~~-~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~  309 (481)
                      .+.++|+.++|. ..-++-..+|.|+.|.++-+.......+..|++|++|.|.   |.+-.-...+.++|+|+.|.|..|
T Consensus        19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence            556667776664 2222234578888888888766677789999999999987   555444566799999999999987


Q ss_pred             ccccccc-----cccccCCcccEEEe
Q 036097          310 IVCFELQ-----NIKISSPSLKRLEI  330 (481)
Q Consensus       310 ~~c~~l~-----~l~~~~~~L~~L~l  330 (481)
                      -.|..-.     ......|+|++|+=
T Consensus        99 PCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   99 PCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             CcccccchhHHHHHHHHcccchhccC
Confidence            6554322     22334788998863

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=95.18  E-value=0.0057  Score=61.14  Aligned_cols=163  Identities=20%  Similarity=0.217  Sum_probs=107.5

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCC-CccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSE-TVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      ..++.|.+...    ....++....... +|+.|+++++.+...+ .....+++|+.|+++.+.+.+  +.......+.|
T Consensus       116 ~~l~~L~l~~n----~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L  188 (394)
T COG4886         116 TNLTSLDLDNN----NITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNL  188 (394)
T ss_pred             cceeEEecCCc----ccccCccccccchhhcccccccccchhhhh-hhhhccccccccccCCchhhh--hhhhhhhhhhh
Confidence            46777777665    5677777777774 9999999999987664 245678999999999998854  33333368889


Q ss_pred             ceeEeeeecCcceEee--cCCCCCcEEEEccCC--CCceEEEecCCccEEEEcCC-CCCCceeccCCCCCcEEEEE---e
Q 036097          215 EDLIFEFCEGLKSIKL--FGRSKLRDIKIKGGR--EAEEVNINALNGHSITVVSP-LPSGKINEVSCKNLKSLFLC---I  286 (481)
Q Consensus       215 e~L~l~~~~~~~~l~i--~~~~~L~~L~l~~~~--~~~~~~~~~p~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~---~  286 (481)
                      +.|+++++. +..+..  .....|+.|.++++.  ..........++..+.+.+. .......+..+++++.|++.   +
T Consensus       189 ~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         189 NNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQI  267 (394)
T ss_pred             hheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccc
Confidence            999999874 233322  122458888888874  12122223455555554444 22224667788888888877   2


Q ss_pred             chhhhHHhhhcCCcccEEEeccc
Q 036097          287 TSVVDETLSYHITRLVVLECLGL  309 (481)
Q Consensus       287 ~~~~~~~~~~~~~~L~~L~L~~~  309 (481)
                      +.-  .. +....+++.|+++++
T Consensus       268 ~~i--~~-~~~~~~l~~L~~s~n  287 (394)
T COG4886         268 SSI--SS-LGSLTNLRELDLSGN  287 (394)
T ss_pred             ccc--cc-ccccCccCEEeccCc
Confidence            221  11 677889999999884

>PLN03150 hypothetical protein; Provisional

Probab=94.89  E-value=0.022  Score=60.32  Aligned_cols=104  Identities=13%  Similarity=0.032  Sum_probs=73.4

Q ss_pred             eeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcccee
Q 036097          138 VKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDL  217 (481)
Q Consensus       138 l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L  217 (481)
                      ++.|+|..+   .-...+|..+..+++|+.|+|++|.+....+.....+++|+.|+|++|.+... +...+..+++|+.|
T Consensus       420 v~~L~L~~n---~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L  495 (623)
T PLN03150        420 IDGLGLDNQ---GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEECCCC---CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEE
Confidence            666776664   23457788888999999999999998654444667899999999999988643 33346789999999


Q ss_pred             EeeeecCcceE--eecC-CCCCcEEEEccCC
Q 036097          218 IFEFCEGLKSI--KLFG-RSKLRDIKIKGGR  245 (481)
Q Consensus       218 ~l~~~~~~~~l--~i~~-~~~L~~L~l~~~~  245 (481)
                      ++++|.....+  .+.. ..++..+.+.++.
T Consensus       496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             ECcCCcccccCChHHhhccccCceEEecCCc
Confidence            99988532221  1111 1345566666654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.88  E-value=0.012  Score=38.18  Aligned_cols=39  Identities=18%  Similarity=0.301  Sum_probs=30.6

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCC
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEF  178 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~  178 (481)
                      +++++|+++.+    ....+|..+.++++|+.|++++|.+.++
T Consensus         1 ~~L~~L~l~~N----~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNN----QITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSS----S-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCC----CCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            36788888876    5557888788999999999999988654

...

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=94.10  E-value=0.032  Score=54.19  Aligned_cols=37  Identities=30%  Similarity=0.408  Sum_probs=33.3

Q ss_pred             cCCCCCHHHHHHHHcCCC-hhHHHhhhcccccchhhhc
Q 036097           16 RISALPEPLLQHIMSFLP-SKDAVRTRLLSKIWEKAWC   52 (481)
Q Consensus        16 ~i~~LPd~iL~~Ils~L~-~~d~~r~~~vskrW~~l~~   52 (481)
                      .+++||+|+|..|..+|+ ..|++|.+.|||.||....
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~   40 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS   40 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence            367999999999999997 7999999999999998544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.90  E-value=0.012  Score=53.35  Aligned_cols=54  Identities=15%  Similarity=0.038  Sum_probs=28.3

Q ss_pred             CccceeEeeeecCcceEeecCCCCCcEEEEccC--C---CCceEEEecCCccEEEEcCC
Q 036097          212 PLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGG--R---EAEEVNINALNGHSITVVSP  265 (481)
Q Consensus       212 p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~~~--~---~~~~~~~~~p~L~~L~l~~~  265 (481)
                      ..|+.|++.++...+......+++||+|.++.+  +   .+..+...+|+|+.++++++
T Consensus        43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N  101 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN  101 (260)
T ss_pred             cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC
Confidence            344444444443222223334567777777666  2   33333345577777777776

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=93.61  E-value=0.1  Score=48.60  Aligned_cols=35  Identities=26%  Similarity=0.382  Sum_probs=30.5

Q ss_pred             ccCCCCCHHHHHHHHcC-----CChhHHHhhhcccccchh
Q 036097           15 DRISALPEPLLQHIMSF-----LPSKDAVRTRLLSKIWEK   49 (481)
Q Consensus        15 d~i~~LPd~iL~~Ils~-----L~~~d~~r~~~vskrW~~   49 (481)
                      +.|..||||||..||.+     ++.+++-++|+|||.|+.
T Consensus       105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~  144 (366)
T KOG2997|consen  105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYK  144 (366)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHH
Confidence            45679999999999975     456999999999999985

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.21  E-value=0.11  Score=29.34  Aligned_cols=25  Identities=48%  Similarity=0.836  Sum_probs=21.7

Q ss_pred             cceEEEecceecCh-HHHHHHhcCCC
Q 036097          188 SLRKLRLAQVRASD-QVIENLVAGCP  212 (481)
Q Consensus       188 ~L~~L~L~~~~~~~-~~l~~l~~~~p  212 (481)
                      +|++|.|.++.+.+ +.+..++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            48999999998866 58999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.67  E-value=0.033  Score=48.56  Aligned_cols=90  Identities=20%  Similarity=0.216  Sum_probs=56.4

Q ss_pred             ccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecce-ecChHHHHHHhcCCCccceeEeeeecCcceEee--
Q 036097          154 HLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQV-RASDQVIENLVAGCPLIEDLIFEFCEGLKSIKL--  230 (481)
Q Consensus       154 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i--  230 (481)
                      ++|..-..--.++.++-+++.+...--.....++.++.|.+..| ++.|..+..+-.-.|+|++|++++|..+++-.+  
T Consensus        92 ~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~  171 (221)
T KOG3864|consen   92 SLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC  171 (221)
T ss_pred             cCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH
Confidence            45543333334666777766553221123445677788888888 455577777777788999999999987665432  


Q ss_pred             -cCCCCCcEEEEcc
Q 036097          231 -FGRSKLRDIKIKG  243 (481)
Q Consensus       231 -~~~~~L~~L~l~~  243 (481)
                       ..+++|+.|.+.+
T Consensus       172 L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  172 LLKLKNLRRLHLYD  185 (221)
T ss_pred             HHHhhhhHHHHhcC
Confidence             2346677666654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.61  E-value=0.0081  Score=54.86  Aligned_cols=77  Identities=14%  Similarity=0.109  Sum_probs=40.2

Q ss_pred             CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh-HHHHHHhcCCCccceeEeeeecCc-------ceEeecC
Q 036097          161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD-QVIENLVAGCPLIEDLIFEFCEGL-------KSIKLFG  232 (481)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~Le~L~l~~~~~~-------~~l~i~~  232 (481)
                      ..+.|+.|.|+-|.+..+.  ....|.+|++|-|..|.+.+ +.+.. +.+.|+|+.|-|..|...       ....+..
T Consensus        39 kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~  115 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV  115 (388)
T ss_pred             hcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence            3455566666655553331  23456666666666666654 33332 456677777776654321       1122333


Q ss_pred             CCCCcEEE
Q 036097          233 RSKLRDIK  240 (481)
Q Consensus       233 ~~~L~~L~  240 (481)
                      +|+|++|+
T Consensus       116 LPnLkKLD  123 (388)
T KOG2123|consen  116 LPNLKKLD  123 (388)
T ss_pred             cccchhcc
Confidence            56666664

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=91.14  E-value=0.01  Score=61.14  Aligned_cols=101  Identities=16%  Similarity=0.150  Sum_probs=69.3

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      +.++.|+|+-+    ...... .+..|++|++|||++|.+..+|.....++. |..|.|.+|.++.  +.. +.+..+|+
T Consensus       187 ~ale~LnLshN----k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t--L~g-ie~LksL~  257 (1096)
T KOG1859|consen  187 PALESLNLSHN----KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT--LRG-IENLKSLY  257 (1096)
T ss_pred             HHhhhhccchh----hhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh--hhh-HHhhhhhh
Confidence            56778888765    222332 566789999999999999878766666666 9999999887643  221 34567799


Q ss_pred             eeEeeeecC--cceE-eecCCCCCcEEEEccCC
Q 036097          216 DLIFEFCEG--LKSI-KLFGRSKLRDIKIKGGR  245 (481)
Q Consensus       216 ~L~l~~~~~--~~~l-~i~~~~~L~~L~l~~~~  245 (481)
                      .|++++|--  ...+ .+.++..|+.|.+.++.
T Consensus       258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            999998732  2222 23445777888887765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=90.26  E-value=0.24  Score=45.45  Aligned_cols=198  Identities=13%  Similarity=0.058  Sum_probs=99.2

Q ss_pred             eeEEEEEEEeeCChhhHHHHHHHHHh--CCeeEEEEEEeecCCcccccCC-------cccCCCCccEEEEcCeeccCCCC
Q 036097          110 VEKLRFKASFLDDSELADRCVCYAIE--STVKELELHTILRGDRLYHLPQ-------MVVCSETVNVLDLFGCILLEFPG  180 (481)
Q Consensus       110 l~~l~l~~~~~~~~~~~~~~~~~~~~--~~l~~L~L~~~~~~~~~~~l~~-------~~~~~~~L~~L~L~~~~~~~~~~  180 (481)
                      +..+.+...  .-+.....|++...+  ++++..+++..+......+++.       .+..||+|+..+||.|-+.... 
T Consensus        32 ~~evdLSGN--tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~-  108 (388)
T COG5238          32 LVEVDLSGN--TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF-  108 (388)
T ss_pred             eeEEeccCC--cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc-
Confidence            444444422  225566777776553  4455555443321222223332       2234555555555555431110 


Q ss_pred             CCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE----------------eecCCCCCcEEEEccC
Q 036097          181 RNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI----------------KLFGRSKLRDIKIKGG  244 (481)
Q Consensus       181 ~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l----------------~i~~~~~L~~L~l~~~  244 (481)
                                          ...+..++++-+.|++|.+.+|. +..+                ...+=|.|+.....++
T Consensus       109 --------------------~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238         109 --------------------PEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             --------------------chHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence                                14455556666666666666552 1100                1111255666655554


Q ss_pred             CC---C---ceEE-EecCCccEEEEcCCCCC-------CceeccCCCCCcEEEEE---e---chhhhHHhhhcCCcccEE
Q 036097          245 RE---A---EEVN-INALNGHSITVVSPLPS-------GKINEVSCKNLKSLFLC---I---TSVVDETLSYHITRLVVL  304 (481)
Q Consensus       245 ~~---~---~~~~-~~~p~L~~L~l~~~~~~-------~~~~~~~~~~L~~L~l~---~---~~~~~~~~~~~~~~L~~L  304 (481)
                      ..   .   .... .+..+|+.+.+..+...       ....+..+.+|+.|+++   +   +...+......-+.|+.|
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            40   0   0000 12246666666655211       12235667888888887   2   233445566777889999


Q ss_pred             Eecccccccccc----cc-----cccCCcccEEEecCCC
Q 036097          305 ECLGLIVCFELQ----NI-----KISSPSLKRLEIFKCT  334 (481)
Q Consensus       305 ~L~~~~~c~~l~----~l-----~~~~~~L~~L~l~~c~  334 (481)
                      .+.+   |---.    ..     ....|+|..|...+..
T Consensus       248 ~lnD---Clls~~G~~~v~~~f~e~~~p~l~~L~~~Yne  283 (388)
T COG5238         248 RLND---CLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE  283 (388)
T ss_pred             cccc---hhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence            9998   74321    11     2235788888777643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=90.15  E-value=0.04  Score=45.10  Aligned_cols=62  Identities=24%  Similarity=0.306  Sum_probs=43.5

Q ss_pred             CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecC
Q 036097          161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEG  224 (481)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~  224 (481)
                      ....|+..+|++|.+.++|......+|.+++|+|.++.+.+-...  +..+|.|+.|+++.|..
T Consensus        51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l  112 (177)
T KOG4579|consen   51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNPL  112 (177)
T ss_pred             CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCcc
Confidence            445677778888887777766666778888888888877552222  55678888888877753

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=90.10  E-value=0.042  Score=55.30  Aligned_cols=102  Identities=12%  Similarity=0.062  Sum_probs=56.2

Q ss_pred             ccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh-HHHHHHhcCCCccceeEeeeecCcceEeecCCCCCc
Q 036097          159 VVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD-QVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLR  237 (481)
Q Consensus       159 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~  237 (481)
                      +..+.+|+.|++.++.+..+.. ....+++|+.|+++++.+++ ..+.    .++.|+.|++.+|..-..-.+.++.+|+
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~~~~~~~~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNLISDISGLESLKSLK  165 (414)
T ss_pred             cccccceeeeeccccchhhccc-chhhhhcchheeccccccccccchh----hccchhhheeccCcchhccCCccchhhh
Confidence            4456677777777777654431 14457777777777777654 3332    3444777777776422222223346666


Q ss_pred             EEEEccCCCCceE---EEecCCccEEEEcCC
Q 036097          238 DIKIKGGREAEEV---NINALNGHSITVVSP  265 (481)
Q Consensus       238 ~L~l~~~~~~~~~---~~~~p~L~~L~l~~~  265 (481)
                      .++++++.....-   ....++++.+.+.++
T Consensus       166 ~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  166 LLDLSYNRIVDIENDELSELISLEELDLGGN  196 (414)
T ss_pred             cccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence            6666666511111   134555666666555

>PF13013 F-box-like_2: F-box-like domain

Probab=87.79  E-value=0.47  Score=37.43  Aligned_cols=30  Identities=20%  Similarity=0.207  Sum_probs=27.7

Q ss_pred             cCCCCCHHHHHHHHcCCChhHHHhhhcccc
Q 036097           16 RISALPEPLLQHIMSFLPSKDAVRTRLLSK   45 (481)
Q Consensus        16 ~i~~LPd~iL~~Ils~L~~~d~~r~~~vsk   45 (481)
                      .+.+||+||+..||.+-+..+...+...|+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            578899999999999999999999888887

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.28  E-value=0.12  Score=45.14  Aligned_cols=55  Identities=16%  Similarity=0.308  Sum_probs=29.3

Q ss_pred             hcCCcccEEEecccccccccccc-----cccCCcccEEEecCCCCccc----ccccCCCcceeEecc
Q 036097          296 YHITRLVVLECLGLIVCFELQNI-----KISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNG  353 (481)
Q Consensus       296 ~~~~~L~~L~L~~~~~c~~l~~l-----~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~  353 (481)
                      .+++.++.|.+.+   |..+.+.     ...+++|+.|+|++|+.+++    .....++|+.|.+.+
T Consensus       122 ~~l~~i~~l~l~~---ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  122 RDLRSIKSLSLAN---CKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             hccchhhhheecc---ccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            3444555555555   5554422     23356666666666666655    223345666666555

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=86.99  E-value=0.26  Score=50.97  Aligned_cols=40  Identities=35%  Similarity=0.625  Sum_probs=36.8

Q ss_pred             CCCCccCCCCCHHHHHHHHcCCChhHHHhhhcccccchhh
Q 036097           11 IDNADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKA   50 (481)
Q Consensus        11 ~~~~d~i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l   50 (481)
                      ....|.++.||-|+..+||+||+.++++++++||+.|+.+
T Consensus       102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            4557999999999999999999999999999999999863

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=86.33  E-value=0.52  Score=23.46  Aligned_cols=14  Identities=29%  Similarity=0.261  Sum_probs=7.4

Q ss_pred             CCccEEEEcCeecc
Q 036097          163 ETVNVLDLFGCILL  176 (481)
Q Consensus       163 ~~L~~L~L~~~~~~  176 (481)
                      ++|+.|+|++|.+.
T Consensus         1 ~~L~~L~l~~n~L~   14 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT   14 (17)
T ss_dssp             TT-SEEEETSS--S
T ss_pred             CccCEEECCCCCCC
Confidence            35777777777653

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=86.20  E-value=0.3  Score=39.85  Aligned_cols=57  Identities=11%  Similarity=0.243  Sum_probs=21.8

Q ss_pred             CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEee
Q 036097          161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFE  220 (481)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~  220 (481)
                      .|.+|+.+.+.. .+..+.......+++|+.+.+... +.. .-...+..|+.|+.+.+.
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~-i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTS-IGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSC-E-TTTTTT-TT-EEEEET
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccc-cceeeeeccccccccccc
Confidence            355666666653 232333334445556666666543 211 011124456556666664

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=85.58  E-value=0.16  Score=51.16  Aligned_cols=100  Identities=16%  Similarity=0.188  Sum_probs=53.4

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh-HHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD-QVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~L  214 (481)
                      .+++.+++..+    ....+...+..+++|++|+|++|.+.++.  ....++.|+.|++.+|.+.+ ..    +..+++|
T Consensus        95 ~~l~~l~l~~n----~i~~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~~----~~~l~~L  164 (414)
T KOG0531|consen   95 KSLEALDLYDN----KIEKIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDISG----LESLKSL  164 (414)
T ss_pred             cceeeeecccc----chhhcccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhccC----Cccchhh
Confidence            34555555443    33333333455677777777777775553  33445557777777776643 22    2235666


Q ss_pred             ceeEeeeecCcceEe--ecCCCCCcEEEEccCC
Q 036097          215 EDLIFEFCEGLKSIK--LFGRSKLRDIKIKGGR  245 (481)
Q Consensus       215 e~L~l~~~~~~~~l~--i~~~~~L~~L~l~~~~  245 (481)
                      +.++++++.....-.  ...+.+++.+.+.++.
T Consensus       165 ~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  165 KLLDLSYNRIVDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             hcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence            666776664211111  2344666666665553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=82.98  E-value=0.072  Score=53.65  Aligned_cols=29  Identities=10%  Similarity=0.002  Sum_probs=12.5

Q ss_pred             ccEEEEcCC-CCCCceeccCCCCCcEEEEE
Q 036097          257 GHSITVVSP-LPSGKINEVSCKNLKSLFLC  285 (481)
Q Consensus       257 L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~  285 (481)
                      |..|+++.+ ....++.|..+.+|+.|.|.
T Consensus       213 Li~lDfScNkis~iPv~fr~m~~Lq~l~Le  242 (722)
T KOG0532|consen  213 LIRLDFSCNKISYLPVDFRKMRHLQVLQLE  242 (722)
T ss_pred             eeeeecccCceeecchhhhhhhhheeeeec
Confidence            344444433 23344444444444444443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=82.91  E-value=0.19  Score=50.79  Aligned_cols=100  Identities=19%  Similarity=0.225  Sum_probs=52.9

Q ss_pred             CeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccce
Q 036097          137 TVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIED  216 (481)
Q Consensus       137 ~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  216 (481)
                      .|+.|-+.++    ....+|..+...++|..|+.+.|.+...+ .....+..|+.|++..+++.+ .+.. +. +-.|..
T Consensus       144 pLkvli~sNN----kl~~lp~~ig~~~tl~~ld~s~nei~slp-sql~~l~slr~l~vrRn~l~~-lp~E-l~-~LpLi~  215 (722)
T KOG0532|consen  144 PLKVLIVSNN----KLTSLPEEIGLLPTLAHLDVSKNEIQSLP-SQLGYLTSLRDLNVRRNHLED-LPEE-LC-SLPLIR  215 (722)
T ss_pred             cceeEEEecC----ccccCCcccccchhHHHhhhhhhhhhhch-HHhhhHHHHHHHHHhhhhhhh-CCHH-Hh-CCceee
Confidence            4555555554    44556666666666666666666664443 244556666666666665532 1111 11 333666


Q ss_pred             eEeeeecCcceE--eecCCCCCcEEEEccCC
Q 036097          217 LIFEFCEGLKSI--KLFGRSKLRDIKIKGGR  245 (481)
Q Consensus       217 L~l~~~~~~~~l--~i~~~~~L~~L~l~~~~  245 (481)
                      |++++|. +..+  .+..|..|+.|-+.++.
T Consensus       216 lDfScNk-is~iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  216 LDFSCNK-ISYLPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             eecccCc-eeecchhhhhhhhheeeeeccCC
Confidence            6666543 2222  33445666666666654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=82.72  E-value=0.91  Score=24.25  Aligned_cols=16  Identities=38%  Similarity=0.532  Sum_probs=11.8

Q ss_pred             CccEEEEcCeeccCCC
Q 036097          164 TVNVLDLFGCILLEFP  179 (481)
Q Consensus       164 ~L~~L~L~~~~~~~~~  179 (481)
                      +|++|+|++|.+..+|
T Consensus         1 ~L~~Ldls~n~l~~ip   16 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIP   16 (22)
T ss_dssp             TESEEEETSSEESEEG
T ss_pred             CccEEECCCCcCEeCC
Confidence            4788888888776554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.18  E-value=0.95  Score=24.68  Aligned_cols=20  Identities=25%  Similarity=0.413  Sum_probs=11.4

Q ss_pred             CcceEEEecceecChHHHHH
Q 036097          187 PSLRKLRLAQVRASDQVIEN  206 (481)
Q Consensus       187 ~~L~~L~L~~~~~~~~~l~~  206 (481)
                      ++|++|+|++|.++++.+..
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~   21 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASA   21 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHH
Confidence            56677777777766655544

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=81.64  E-value=0.83  Score=25.55  Aligned_cols=17  Identities=29%  Similarity=0.768  Sum_probs=12.3

Q ss_pred             CCcccEEEecCCCCccc
Q 036097          322 SPSLKRLEIFKCTKLAA  338 (481)
Q Consensus       322 ~~~L~~L~l~~c~~l~~  338 (481)
                      |++|++|++++|..+++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            46777888888876654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	481
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 69.9 bits (171), Expect = 2e-13
 Identities = 57/347 (16%), Positives = 117/347 (33%), Gaps = 65/347 (18%)

Query: 17  ISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLEMRAARG 76
             +LP+ LL  I S L   + ++   + K W +       L  DE L++   L  +    
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYR-------LASDESLWQTLDLTGKNLHP 61

Query: 77  DVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYAIES 136
           DV     ++G +     ++              V+ +    S ++ S L        I S
Sbjct: 62  DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH------GILS 115

Query: 137 TVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQ 196
              +L+                         L L G  L +       K  +L +L L+ 
Sbjct: 116 QCSKLQ------------------------NLSLEGLRLSDPIVNTLAKNSNLVRLNLSG 151

Query: 197 VRA-SDQVIENLVAGCPLIEDLIFEFC-----EGLKSIKLFGRSKLRDIKIKGGREAEEV 250
               S+  ++ L++ C  +++L   +C     + ++         +  + + G R+    
Sbjct: 152 CSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK---- 207

Query: 251 NINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC-ITSVVDETLSYHITRLVVLECLGL 309
               L    ++ +            C NL  L L     + ++       +L  L+ L L
Sbjct: 208 ---NLQKSDLSTLVR---------RCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSL 254

Query: 310 IVCFELQNIKISS----PSLKRLEIFKCTKLAAVEIETPNLSKCKYN 352
             C+++    +      P+LK L++F       +++    L   + N
Sbjct: 255 SRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQIN 301

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 58/361 (16%), Positives = 112/361 (31%), Gaps = 52/361 (14%)

Query: 15  DRISALPEPLLQHIMSFLPS-KDAVRTRLLSKIWEKAW--------CTFPVLNFDEDLFE 65
               + PE +L+H+ SF+   KD     L+ K W +                     +  
Sbjct: 4   RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIR 63

Query: 66  R----ELLEMRAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLD 121
           R      +E++        FN        Y    +EA     +     +E++R K   + 
Sbjct: 64  RFPKVRSVELKGKPH-FADFNLVPDGWGGYVYPWIEAMSSSYT----WLEEIRLKRMVVT 118

Query: 122 DS---ELADRCVCYAIESTVKELELHTILR-GDRLYHLPQMVVCSETVNVLDLFGCILLE 177
           D     +A            K L L +          L  +      +  LDL    + +
Sbjct: 119 DDCLELIAKSF------KNFKVLVLSSCEGFSTD--GLAAIAATCRNLKELDLRESDVDD 170

Query: 178 FPGRN----SVKLPSLRKLRLAQVRA--SDQVIENLVAGCPLIEDLIFEFCEGLKSIKLF 231
             G           SL  L ++ + +  S   +E LV  CP ++ L       L+ +   
Sbjct: 171 VSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL 230

Query: 232 GR--SKLRDIKIKG------GREAEEVNINALNGHSITVVSPLPSGKINEVS-----CKN 278
            +   +L ++   G            +++       +  +S         +      C  
Sbjct: 231 LQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR 290

Query: 279 LKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFE---LQNIKISSPSLKRLEIFKCTK 335
           L +L L   +V    L   + +   L+ L ++   E   L+ +  +   L+ L +F    
Sbjct: 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEP 350

Query: 336 L 336
            
Sbjct: 351 F 351

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 27/207 (13%), Positives = 55/207 (26%), Gaps = 25/207 (12%)

Query: 143 LHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQ 202
               +R D    L   +   + +  L  F   +  +          L  L L+       
Sbjct: 245 YTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSY 304

Query: 203 VIENLVAGCPLIEDLIFEFCEGLKSIKLFGRS--KLRDIKIKGGREAEEVNINALNGHSI 260
            +  L+  CP ++ L          +++   +   LR++++            AL    +
Sbjct: 305 DLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL 364

Query: 261 TVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVC-------- 312
             VS           C  L+S+      + +  L         +    L +         
Sbjct: 365 VSVSM---------GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYL 415

Query: 313 ------FELQNIKISSPSLKRLEIFKC 333
                      I      L+RL +   
Sbjct: 416 TLEPLDIGFGAIVEHCKDLRRLSLSGL 442

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 46/276 (16%), Positives = 78/276 (28%), Gaps = 72/276 (26%)

Query: 167 VLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLK 226
           V D +G  +  +    S     L ++RL ++  +D  +E +       + L+   CEG  
Sbjct: 85  VPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG-- 142

Query: 227 SIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC- 285
                                        +   +  ++          +C+NLK L L  
Sbjct: 143 ----------------------------FSTDGLAAIA---------ATCRNLKELDLRE 165

Query: 286 --ITSVVDETLSYHITRLVVLECLGLIVCFE------LQNIKISSPSLKRLEIFKCTKLA 337
             +  V    LS+       L  L +           L+ +    P+LK L         
Sbjct: 166 SDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL--------- 216

Query: 338 AVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWS 397
                   L++      +       A +L E     YT    P  Y      ++      
Sbjct: 217 -------KLNRAVPLEKLATLLQR-APQLEELGTGGYTAEVRPDVYSGLSVALSGC---- 264

Query: 398 KVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFS 433
               L    G    VP  L  +     S +  LN S
Sbjct: 265 --KELRCLSGFWDAVPAYLPAVY-SVCSRLTTLNLS 297

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 65.0 bits (158), Expect = 2e-11
 Identities = 57/380 (15%), Positives = 115/380 (30%), Gaps = 47/380 (12%)

Query: 1   MADVRSMKPKIDNADRISALPEPLLQHIMSFLPS-KDAVRTRLLSKIWEKA--------W 51
           M D    + K+       A  + +++ +M+++   KD     L+ + W K          
Sbjct: 1   MEDPDIKRCKLS----CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVT 56

Query: 52  CTFPVLNFDEDLFER----ELLEMRAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGK 107
                    + L  R      L+++        FN        Y    +    ++     
Sbjct: 57  MALCYTATPDRLSRRFPNLRSLKLKGKP-RAAMFNLIPENWGGYVTPWVTEISNNLR--- 112

Query: 108 LSVEKLRFKASFLDDSELADRCVCYAIESTVKELELH--TILRGDRLYHLPQMVVCSETV 165
             ++ + F+   + D +L       A    ++ L+L   +    D L  +   V     +
Sbjct: 113 -QLKSVHFRRMIVSDLDLDRLAKARA--DDLETLKLDKCSGFTTDGLLSI---VTHCRKI 166

Query: 166 NVLDLFGCILLEFPGRNSVKL----PSLRKLRLAQV---RASDQVIENLVAGCPLIEDLI 218
             L +      E  G+   +L     SL  L        + S + +E +   C  +  + 
Sbjct: 167 KTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226

Query: 219 FEFCEGLKSIKLFGRS----KLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKIN-- 272
               E L+ +  F  +    +     +       E  +N +    +  +     G     
Sbjct: 227 VGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMP 286

Query: 273 --EVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFE---LQNIKISSPSLKR 327
                   ++ L L    +  E     I +   LE L          L+ +      LKR
Sbjct: 287 ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346

Query: 328 LEIFKCTKLAAVEIETPNLS 347
           L I +      +E E   +S
Sbjct: 347 LRIERGADEQGMEDEEGLVS 366

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 89/522 (17%), Positives = 156/522 (29%), Gaps = 151/522 (28%)

Query: 3   DVR-SMKPKIDNA--DRISALPEPLLQ--HIMSFLPSK----------DAVRTR---LLS 44
           DV+   K  +     D I    + +     +   L SK          + +R     L+S
Sbjct: 37  DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96

Query: 45  KIWEKAWCTFPVLNFDEDLFERELLEMRAARGDVQKF---NQARGKLLNYWKQALEAHRH 101
            I  K     P +     + +R+ L       D Q F   N +R +     +QAL   R 
Sbjct: 97  PI--KTEQRQPSMMTRMYIEQRDRLY-----NDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 102 H----------CSTGK--LSVEKLR---------FKASFL-------DDSELAD-RCVCY 132
                         GK  ++++            FK  +L        ++ L   + + Y
Sbjct: 150 AKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 133 AIESTVKELELHTI------------LRGDRLYHLPQMVVC---------SETVNVLDLF 171
            I+        H+             LR  RL        C         ++  N  +  
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELR--RLLKSKPYENCLLVLLNVQNAKAWNAFN-L 264

Query: 172 GC-ILL--------EFPGRNSVKLPSLRKLRLAQVRASDQVIENL--VAGCPLIEDLIFE 220
            C ILL        +F    +    SL    +      D+V   L     C   +DL  E
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP--DEVKSLLLKYLDCR-PQDLPRE 321

Query: 221 FCEGL-KSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNL 279
                 + + +   S +RD         + VN + L               I E S   L
Sbjct: 322 VLTTNPRRLSIIAES-IRDGLATWDN-WKHVNCDKLT-------------TIIESSLNVL 366

Query: 280 K-----------SLF---LCITSVVDETL----SYHITRLVVLEC--LGLIVCFELQNIK 319
           +           S+F     I +++   +          +VV +     L+   + +   
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-QPKEST 425

Query: 320 ISSPSLKRLEIFKCTKLAAVE---IETPNLSKCKYNGGVVP------FSSSTALKLLETD 370
           IS PS+      K     A+    ++  N+ K   +  ++P      F S     L   +
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 371 LNLYTINFDPQWYV--KFIE--LIAKFHQW---SKVLNLLSE 405
                  F    ++  +F+E  +      W     +LN L +
Sbjct: 486 HPERMTLF-RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 6e-05
 Identities = 33/215 (15%), Positives = 68/215 (31%), Gaps = 49/215 (22%)

Query: 20  LPEPLL------------QHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFD-----ED 62
           +P  LL              +++ L         L+ K  +++  + P +  +     E+
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKY-----SLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 63  LFE--RELLEMRAARGDVQKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFL 120
            +   R +++           +     L  Y+   +    HH    +       F+  FL
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG---HHLKNIEHPERMTLFRMVFL 498

Query: 121 DDSELADR--------CVCYAIESTVKELELHT--ILRGDRLYHLPQMVVCSETVNVLDL 170
           D   L  +            +I +T+++L+ +   I   D  Y           VN +  
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE--------RLVNAILD 550

Query: 171 FGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIE 205
           F    L     N +       LR+A +   + + E
Sbjct: 551 F----LPKIEENLICSKYTDLLRIALMAEDEAIFE 581

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	481
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.73
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.69
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.69
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.69
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.68
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.68
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.66
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.65
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.64
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.63
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.63
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.63
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.63
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.62
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.61
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.61
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.6
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.6
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.6
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.59
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.59
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.58
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.58
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.58
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.57
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.56
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.55
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.55
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.55
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.54
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.54
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.54
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.53
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.52
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.51
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.51
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.5
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.49
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.48
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.47
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.46
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.46
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.45
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.44
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.43
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.42
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.41
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.39
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.39
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.38
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.35
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.35
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.33
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.32
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.31
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.3
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.29
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.27
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.25
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.22
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.21
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.2
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.19
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.12
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.1
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.07
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.03
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.0
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.0
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.97
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.97
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.94
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.91
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.9
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.89
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.86
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.84
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.84
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.61
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.59
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.56
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.47
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.47
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.46
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.46
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.45
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.44
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.39
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.37
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.33
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.33
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.3
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.26
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.22
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.19
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.18
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.14
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.14
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.1
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.02
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.02
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.01
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.01
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.94
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.93
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.92
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.92
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.91
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.91
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.86
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.83
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.8
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.65
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.62
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.59
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.54
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.53
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.51
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.47
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.46
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.42
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.38
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.05
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.81
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.74
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.72
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.68
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.6
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.28
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.36
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.1
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	93.64
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	88.08
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	85.73
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	83.56

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=1e-27  Score=251.24  Aligned_cols=424  Identities=13%  Similarity=0.075  Sum_probs=237.6

Q ss_pred             CCCCHHHHHHHHcCC-ChhHHHhhhcccccchhhhccCC-eeEeeccchhhH--HHHHH-hh--cCch---hh---hHH-
Q 036097           18 SALPEPLLQHIMSFL-PSKDAVRTRLLSKIWEKAWCTFP-VLNFDEDLFERE--LLEMR-AA--RGDV---QK---FNQ-   83 (481)
Q Consensus        18 ~~LPd~iL~~Ils~L-~~~d~~r~~~vskrW~~l~~~~~-~l~~~~~~~~~~--~~~~~-~~--~~~~---~~---~~~-   83 (481)
                      ++||||+|.+||+|| +.+|++++++|||||++++...+ .+.+.. .+...  ....+ +.  .-+.   +.   +.. 
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~   92 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLI   92 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCS
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccc
Confidence            489999999999999 79999999999999998764433 222211 11100  00000 00  0000   00   000 


Q ss_pred             --HHHH-HHHHHHHHHHhccCCCCCCCcceeEEEEEEEeeCChhhHHHHHHHHHhCCeeEEEEEEeecCCcccccCCccc
Q 036097           84 --ARGK-LLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMVV  160 (481)
Q Consensus        84 --~~~~-~~~~v~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~l~~~~~  160 (481)
                        .... ...++..+....+.        ++.+.+... .. ......|+......++++|++..+. ......++....
T Consensus        93 ~~~~~~~~~~~l~~l~~~~~~--------L~~L~L~~~-~i-~~~~~~~l~~~~~~~L~~L~L~~~~-~~~~~~l~~~~~  161 (592)
T 3ogk_B           93 PENWGGYVTPWVTEISNNLRQ--------LKSVHFRRM-IV-SDLDLDRLAKARADDLETLKLDKCS-GFTTDGLLSIVT  161 (592)
T ss_dssp             CTTSCCBCHHHHHHHHHHCTT--------CCEEEEESC-BC-CHHHHHHHHHHHGGGCCEEEEESCE-EEEHHHHHHHHH
T ss_pred             cccccccchHHHHHHHhhCCC--------CCeEEeecc-Ee-cHHHHHHHHHhccccCcEEECcCCC-CcCHHHHHHHHh
Confidence              0000 00111122212221        666666643 11 1222334444433458888887651 122334444445


Q ss_pred             CCCCccEEEEcCeeccCCCC----CCCcCCCcceEEEecceecC---hHHHHHHhcCCCccceeEeeeecCcce-EeecC
Q 036097          161 CSETVNVLDLFGCILLEFPG----RNSVKLPSLRKLRLAQVRAS---DQVIENLVAGCPLIEDLIFEFCEGLKS-IKLFG  232 (481)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~----~~~~~~~~L~~L~L~~~~~~---~~~l~~l~~~~p~Le~L~l~~~~~~~~-l~i~~  232 (481)
                      .|++|++|+|++|.+.+...    .....+++|++|+++++.++   ...+..++..||+|++|++++|..... -.+..
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~  241 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA  241 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence            78999999999987643311    12246789999999988775   467777788899999999988742110 01112


Q ss_pred             CCCCcEEEEc---------------------------cCC--CCceEEEecCCccEEEEcCCCCC---CceeccCCCCCc
Q 036097          233 RSKLRDIKIK---------------------------GGR--EAEEVNINALNGHSITVVSPLPS---GKINEVSCKNLK  280 (481)
Q Consensus       233 ~~~L~~L~l~---------------------------~~~--~~~~~~~~~p~L~~L~l~~~~~~---~~~~~~~~~~L~  280 (481)
                      +++|+.|.+.                           ++.  .+..+...+++|++|+++++.-.   ....+..+++|+
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~  321 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE  321 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence            3445555444                           322  11222234667777777776311   112356777888


Q ss_pred             EEEEE--echhhhHHhhhcCCcccEEEecc-c------ccccccc-----cccccCCcccEEEecCCCCccc-----ccc
Q 036097          281 SLFLC--ITSVVDETLSYHITRLVVLECLG-L------IVCFELQ-----NIKISSPSLKRLEIFKCTKLAA-----VEI  341 (481)
Q Consensus       281 ~L~l~--~~~~~~~~~~~~~~~L~~L~L~~-~------~~c~~l~-----~l~~~~~~L~~L~l~~c~~l~~-----~~~  341 (481)
                      .|++.  +++..+..+...+++|++|++.+ +      ..|..++     .+...+++|+.|++ +|..+.+     +..
T Consensus       322 ~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~  400 (592)
T 3ogk_B          322 VLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGT  400 (592)
T ss_dssp             EEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHH
T ss_pred             EEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHh
Confidence            88776  55566666667778888888772 0      0012222     22334678888888 3444443     334


Q ss_pred             cCCCcceeEecc----cccCCc----chhhhhccCCCccEEEEeeChh-hH-HHHHHHHhhcccceeeEEEEEEeeceee
Q 036097          342 ETPNLSKCKYNG----GVVPFS----SSTALKLLETDLNLYTINFDPQ-WY-VKFIELIAKFHQWSKVLNLLSECGESVI  411 (481)
Q Consensus       342 ~~p~L~~L~~~~----~~~~~~----~~~~l~~~~~~L~~l~l~~~~~-~~-~~~~~~~~~l~~L~~l~~L~i~~~~~~~  411 (481)
                      .+|+|+.|.+.+    +.++..    ....+...+++|+.+++..|.+ .. ..+..+...+++|+.   |.++++....
T Consensus       401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~---L~L~~n~l~~  477 (592)
T 3ogk_B          401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW---MLLGYVGESD  477 (592)
T ss_dssp             HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCE---EEECSCCSSH
T ss_pred             hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceE---eeccCCCCCH
Confidence            578888888853    233331    1222334688888888876542 11 223334444555555   8888664221


Q ss_pred             --echhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE-eecCc
Q 036097          412 --VPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI-EYGRA  467 (481)
Q Consensus       412 --~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l-~~~~~  467 (481)
                        ++..     ...+++|++|+|+.+. .+    ...++.+...+|+|+.|.+ +|...
T Consensus       478 ~~~~~~-----~~~~~~L~~L~l~~n~-l~----~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          478 EGLMEF-----SRGCPNLQKLEMRGCC-FS----ERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             HHHHHH-----HTCCTTCCEEEEESCC-CB----HHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             HHHHHH-----HhcCcccCeeeccCCC-Cc----HHHHHHHHHhcCccCeeECcCCcCC
Confidence              2211     3346889999999987 34    3345666678999999999 66543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=6e-28  Score=253.06  Aligned_cols=424  Identities=14%  Similarity=0.132  Sum_probs=241.5

Q ss_pred             CccCCCCCHHHHHHHHcCCC-hhHHHhhhcccccchhhhcc-CCeeEeeccchhh-HHHHHH-h-----------hcCch
Q 036097           14 ADRISALPEPLLQHIMSFLP-SKDAVRTRLLSKIWEKAWCT-FPVLNFDEDLFER-ELLEMR-A-----------ARGDV   78 (481)
Q Consensus        14 ~d~i~~LPd~iL~~Ils~L~-~~d~~r~~~vskrW~~l~~~-~~~l~~~~~~~~~-~~~~~~-~-----------~~~~~   78 (481)
                      .|+++.||||||.+||+||+ .+|++++++|||||+++... ...+.+....... ...-.+ +           ...+.
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~   82 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF   82 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGG
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhc
Confidence            58999999999999999999 99999999999999987321 2223332211000 000000 0           00000


Q ss_pred             ----hhhHHHHHHHHHHHHHHHHhccCCCCCCCcceeEEEEEEEeeCChhhHHHHHHHHHhCCeeEEEEEEeecCCcccc
Q 036097           79 ----QKFNQARGKLLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYH  154 (481)
Q Consensus        79 ----~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~  154 (481)
                          ..|.   ..+..++..+....+.        ++.+.+... ...........  ...+++++|++..+. ......
T Consensus        83 ~l~~~~~~---~~~~~~l~~l~~~~~~--------L~~L~L~~~-~~~~~~~~~l~--~~~~~L~~L~L~~~~-~~~~~~  147 (594)
T 2p1m_B           83 NLVPDGWG---GYVYPWIEAMSSSYTW--------LEEIRLKRM-VVTDDCLELIA--KSFKNFKVLVLSSCE-GFSTDG  147 (594)
T ss_dssp             TCSCTTSC---CBCHHHHHHHHHHCTT--------CCEEEEESC-BCCHHHHHHHH--HHCTTCCEEEEESCE-EEEHHH
T ss_pred             cccccccc---chhhHHHHHHHHhCCC--------CCeEEeeCc-EEcHHHHHHHH--HhCCCCcEEeCCCcC-CCCHHH
Confidence                0000   0011223333333222        888888754 22222222111  124789999988651 122233


Q ss_pred             cCCcccCCCCccEEEEcCeeccCCCC----CCCcCCCcceEEEeccee--cChHHHHHHhcCCCccceeEeeeecCcceE
Q 036097          155 LPQMVVCSETVNVLDLFGCILLEFPG----RNSVKLPSLRKLRLAQVR--ASDQVIENLVAGCPLIEDLIFEFCEGLKSI  228 (481)
Q Consensus       155 l~~~~~~~~~L~~L~L~~~~~~~~~~----~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l  228 (481)
                      ++.....|++|++|+|++|.+.+...    .....+++|++|+++++.  +++..+..+...||+|++|++++|..+..+
T Consensus       148 l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l  227 (594)
T 2p1m_B          148 LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL  227 (594)
T ss_dssp             HHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHH
T ss_pred             HHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHH
Confidence            55555578999999999998654321    122367899999999885  666778887888999999999988443331


Q ss_pred             --eecCCCCCcEEEEccCC-------------------CCceE--------------EEecCCccEEEEcCCCCC---Cc
Q 036097          229 --KLFGRSKLRDIKIKGGR-------------------EAEEV--------------NINALNGHSITVVSPLPS---GK  270 (481)
Q Consensus       229 --~i~~~~~L~~L~l~~~~-------------------~~~~~--------------~~~~p~L~~L~l~~~~~~---~~  270 (481)
                        .+..+++|+.|.+..+.                   .+..+              ...+++|++|+++++.-.   ..
T Consensus       228 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~  307 (594)
T 2p1m_B          228 ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLV  307 (594)
T ss_dssp             HHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHH
T ss_pred             HHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHH
Confidence              11234667777654331                   11111              114678888888887421   12


Q ss_pred             eeccCCCCCcEEEEE--echhhhHHhhhcCCcccEEEeccc-----ccccccc-----cccccCCcccEEEecCCCCccc
Q 036097          271 INEVSCKNLKSLFLC--ITSVVDETLSYHITRLVVLECLGL-----IVCFELQ-----NIKISSPSLKRLEIFKCTKLAA  338 (481)
Q Consensus       271 ~~~~~~~~L~~L~l~--~~~~~~~~~~~~~~~L~~L~L~~~-----~~c~~l~-----~l~~~~~~L~~L~l~~c~~l~~  338 (481)
                      ..+..+++|++|.+.  +++..+..+...+++|+.|++.+.     ..|..++     .+...+++|+.|.+ +|..+.+
T Consensus       308 ~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~  386 (594)
T 2p1m_B          308 KLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTN  386 (594)
T ss_dssp             HHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCH
T ss_pred             HHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCH
Confidence            235678888888887  555666667777888888888430     0033333     22234788888855 4455543


Q ss_pred             -----ccccCCCcceeEec--c----cccCC----cchhhhhccCCCccEEEEeeChhhHH-HHHHHHhhcccceeeEEE
Q 036097          339 -----VEIETPNLSKCKYN--G----GVVPF----SSSTALKLLETDLNLYTINFDPQWYV-KFIELIAKFHQWSKVLNL  402 (481)
Q Consensus       339 -----~~~~~p~L~~L~~~--~----~~~~~----~~~~~l~~~~~~L~~l~l~~~~~~~~-~~~~~~~~l~~L~~l~~L  402 (481)
                           +...+|+|+.|.+.  +    +.++.    .....+...+++|+.+++..  ...+ .+..+...+++|+.   |
T Consensus       387 ~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~---L  461 (594)
T 2p1m_B          387 AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEM---L  461 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCE---E
T ss_pred             HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccE---e
Confidence                 33457888888887  3    23331    11222334788888888844  2222 22333334555665   8


Q ss_pred             EEEeecee-eechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE-eecCc
Q 036097          403 LSECGESV-IVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI-EYGRA  467 (481)
Q Consensus       403 ~i~~~~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l-~~~~~  467 (481)
                      .++++... .....+    ...+++|+.|+|+.+.. +    ...+..+...+|+|+.|.+ +|...
T Consensus       462 ~L~~~~i~~~~~~~l----~~~~~~L~~L~L~~n~~-~----~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          462 SVAFAGDSDLGMHHV----LSGCDSLRKLEIRDCPF-G----DKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             EEESCCSSHHHHHHH----HHHCTTCCEEEEESCSC-C----HHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             eccCCCCcHHHHHHH----HhcCCCcCEEECcCCCC-c----HHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            88866421 111111    12267899999998875 3    2344556677999999999 76643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=6.7e-23  Score=199.07  Aligned_cols=259  Identities=17%  Similarity=0.154  Sum_probs=148.8

Q ss_pred             CCccCCCCCHHHHHHHHcCCChhHHHhhhcccccchhhhccCCeeEeeccchhhHHHHHHhhcCchhhhHHHHHHHHHHH
Q 036097           13 NADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLEMRAARGDVQKFNQARGKLLNYW   92 (481)
Q Consensus        13 ~~d~i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   92 (481)
                      +...+++|||||+.+||+||+.+|+++++.|||+|+++... |.+                                   
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~-~~~-----------------------------------   48 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD-ESL-----------------------------------   48 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTC-STT-----------------------------------
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC-chh-----------------------------------
Confidence            34568999999999999999999999999999999997532 110                                   


Q ss_pred             HHHHHhccCCCCCCCcceeEEEEEEEeeCChhhHHHHHHHHHhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcC
Q 036097           93 KQALEAHRHHCSTGKLSVEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFG  172 (481)
Q Consensus        93 ~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~  172 (481)
                                       ++.+.+... ...    ...+.....++++.+++..+    .....+..++.+++|++|++++
T Consensus        49 -----------------~~~l~l~~~-~~~----~~~~~~~~~~~l~~L~l~~n----~l~~~~~~~~~~~~L~~L~L~~  102 (336)
T 2ast_B           49 -----------------WQTLDLTGK-NLH----PDVTGRLLSQGVIAFRCPRS----FMDQPLAEHFSPFRVQHMDLSN  102 (336)
T ss_dssp             -----------------SSEEECTTC-BCC----HHHHHHHHHTTCSEEECTTC----EECSCCCSCCCCBCCCEEECTT
T ss_pred             -----------------heeeccccc-cCC----HHHHHhhhhccceEEEcCCc----cccccchhhccCCCCCEEEccC
Confidence                             111111100 000    11223333356666666543    2223333456778888888888


Q ss_pred             eeccCC-CCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE----eecCCCCCcEEEEccCCCC
Q 036097          173 CILLEF-PGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI----KLFGRSKLRDIKIKGGREA  247 (481)
Q Consensus       173 ~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l----~i~~~~~L~~L~l~~~~~~  247 (481)
                      |.+... .+.....+++|++|++++|.+++..+.. +..+++|++|++++|..+...    .+..+++|+.|++++|..+
T Consensus       103 ~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l  181 (336)
T 2ast_B          103 SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF  181 (336)
T ss_dssp             CEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred             CCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence            876421 1123446778888888888776554443 455788888888877544321    1233566666666665211


Q ss_pred             ceEEEecCCccEEEEcCCCCCCceeccCCC-CCcEEEEE-----echhhhHHhhhcCCcccEEEeccccccccccc----
Q 036097          248 EEVNINALNGHSITVVSPLPSGKINEVSCK-NLKSLFLC-----ITSVVDETLSYHITRLVVLECLGLIVCFELQN----  317 (481)
Q Consensus       248 ~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~-~L~~L~l~-----~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~----  317 (481)
                      ...                 .....+..++ +|++|+++     +++..+...+..+++|+.|++++   |..++.    
T Consensus       182 ~~~-----------------~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~---~~~l~~~~~~  241 (336)
T 2ast_B          182 TEK-----------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD---SVMLKNDCFQ  241 (336)
T ss_dssp             CHH-----------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT---CTTCCGGGGG
T ss_pred             ChH-----------------HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC---CCcCCHHHHH
Confidence            100                 0112233444 44444443     33355566667778888888887   443221    


Q ss_pred             ccccCCcccEEEecCCCCcccc----cccCCCcceeEeccc
Q 036097          318 IKISSPSLKRLEIFKCTKLAAV----EIETPNLSKCKYNGG  354 (481)
Q Consensus       318 l~~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~L~~~~~  354 (481)
                      ....+++|++|++++|..+.+.    ...+|+|+.|.+.++
T Consensus       242 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            1123577777777777544321    234566777766665

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.73  E-value=1.1e-18  Score=187.97  Aligned_cols=305  Identities=11%  Similarity=0.014  Sum_probs=173.8

Q ss_pred             hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      .+++++|+++.+  . -....|  ...+++|++|++++|.+...++. ...+++|++|++++|.+.+. +...+..+++|
T Consensus       177 l~~L~~L~Ls~n--~-l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L  249 (768)
T 3rgz_A          177 CGELKHLAISGN--K-ISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD-FSRAISTCTEL  249 (768)
T ss_dssp             CTTCCEEECCSS--E-EESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC-HHHHTTTCSSC
T ss_pred             CCCCCEEECCCC--c-ccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc-ccHHHhcCCCC
Confidence            356777777654  1 111122  25788899999999888665443 67789999999999988643 33447889999


Q ss_pred             ceeEeeeecCcceEeecCCCCCcEEEEccCCCC----ceEEEecCCccEEEEcCC--CCCCceeccCCCCCcEEEEE---
Q 036097          215 EDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREA----EEVNINALNGHSITVVSP--LPSGKINEVSCKNLKSLFLC---  285 (481)
Q Consensus       215 e~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~----~~~~~~~p~L~~L~l~~~--~~~~~~~~~~~~~L~~L~l~---  285 (481)
                      ++|++++|..........+++|+.|++++|...    ..+...+++|+.|+++++  .+..+..+..+++|++|+++   
T Consensus       250 ~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~  329 (768)
T 3rgz_A          250 KLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN  329 (768)
T ss_dssp             CEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred             CEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence            999999885433332235688999999887511    111122488999999888  33456678888999999887   


Q ss_pred             echhhhHHhhhcCCcccEEEecccccccccccccccCC-cccEEEecCCCCcc---------------------------
Q 036097          286 ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSP-SLKRLEIFKCTKLA---------------------------  337 (481)
Q Consensus       286 ~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~-~L~~L~l~~c~~l~---------------------------  337 (481)
                      +.+......+..+++|+.|++++|.+...+.......+ +|+.|++++|..-.                           
T Consensus       330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  409 (768)
T 3rgz_A          330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK  409 (768)
T ss_dssp             EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred             ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence            44343444567788888888888432211111111112 45555555443111                           


Q ss_pred             --cccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeecee-eech
Q 036097          338 --AVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESV-IVPK  414 (481)
Q Consensus       338 --~~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~-~~~~  414 (481)
                        .....+++|+.|.++++.+.......+. .+++|+.+++..+...    +.++..+..+.+|+.|+++.+... ..|+
T Consensus       410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~  484 (768)
T 3rgz_A          410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLE----GEIPQELMYVKTLETLILDFNDLTGEIPS  484 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCC----SCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             cCHHHhcCCCCCEEECcCCcccCcccHHHh-cCCCCCEEECCCCccc----CcCCHHHcCCCCceEEEecCCcccCcCCH
Confidence              1112344555555554433222221111 4455555555433300    112233334444444666655432 3333


Q ss_pred             hhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097          415 ELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       415 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                      .     +..+++|+.|+++.+.-.+      .++..+..+|+|+.|.+
T Consensus       485 ~-----l~~l~~L~~L~L~~N~l~~------~~p~~~~~l~~L~~L~L  521 (768)
T 3rgz_A          485 G-----LSNCTNLNWISLSNNRLTG------EIPKWIGRLENLAILKL  521 (768)
T ss_dssp             G-----GGGCTTCCEEECCSSCCCS------CCCGGGGGCTTCCEEEC
T ss_pred             H-----HhcCCCCCEEEccCCccCC------cCChHHhcCCCCCEEEC
Confidence            3     3345667777776665321      23455666777777777

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.69  E-value=9.2e-18  Score=180.72  Aligned_cols=238  Identities=12%  Similarity=0.057  Sum_probs=142.1

Q ss_pred             CCeeEEEEEEeecCCcccccCC--cccCCCCccEEEEcCeeccCCCCCC-CcCCCcceEEEecceecChHHHH--HHhcC
Q 036097          136 STVKELELHTILRGDRLYHLPQ--MVVCSETVNVLDLFGCILLEFPGRN-SVKLPSLRKLRLAQVRASDQVIE--NLVAG  210 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~--~l~~~  210 (481)
                      +++++|+|+.+   .-...+|.  .+..+++|++|+|++|.+....+.. ...+++|++|+++++.+.+....  ..+..
T Consensus       100 ~~L~~L~Ls~n---~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~  176 (768)
T 3rgz_A          100 ASLTSLDLSRN---SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG  176 (768)
T ss_dssp             TTCCEEECCSS---EEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred             CCCCEEECCCC---cCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence            57888887765   12234555  6677888888888888775433222 25778888888888877552222  23677


Q ss_pred             CCccceeEeeeecCcceEeecCCCCCcEEEEccCCCCc--eEEEecCCccEEEEcCC--CCCCceeccCCCCCcEEEEE-
Q 036097          211 CPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAE--EVNINALNGHSITVVSP--LPSGKINEVSCKNLKSLFLC-  285 (481)
Q Consensus       211 ~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~--~~~~~~p~L~~L~l~~~--~~~~~~~~~~~~~L~~L~l~-  285 (481)
                      +++|++|++++|..........+++|+.|++++|....  .....+++|++|+++++  .+..+..+..+++|+.|+++ 
T Consensus       177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  256 (768)
T 3rgz_A          177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS  256 (768)
T ss_dssp             CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred             CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence            88888888887753333344567888888888876211  11335678888888887  33445567788888888876 


Q ss_pred             --echhhhHHhhhcCCcccEEEeccccccccccc-ccccCCcccEEEecCCCCc---ccccccCCCcceeEecccccCCc
Q 036097          286 --ITSVVDETLSYHITRLVVLECLGLIVCFELQN-IKISSPSLKRLEIFKCTKL---AAVEIETPNLSKCKYNGGVVPFS  359 (481)
Q Consensus       286 --~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~-l~~~~~~L~~L~l~~c~~l---~~~~~~~p~L~~L~~~~~~~~~~  359 (481)
                        +.+.. ..  ..+++|+.|++++|.....+.. +...+++|++|++++|.--   .......++|++|.++++.+...
T Consensus       257 n~l~~~~-~~--~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~  333 (768)
T 3rgz_A          257 NQFVGPI-PP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE  333 (768)
T ss_dssp             SCCEESC-CC--CCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             CcccCcc-Cc--cccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCc
Confidence              22211 11  1667777777777432222221 1122467777777775421   12233456777777776554321


Q ss_pred             chhhhhccCCCccEEEEeeC
Q 036097          360 SSTALKLLETDLNLYTINFD  379 (481)
Q Consensus       360 ~~~~l~~~~~~L~~l~l~~~  379 (481)
                      ........+++|+.+++..+
T Consensus       334 ip~~~l~~l~~L~~L~Ls~n  353 (768)
T 3rgz_A          334 LPMDTLLKMRGLKVLDLSFN  353 (768)
T ss_dssp             CCHHHHTTCTTCCEEECCSS
T ss_pred             CCHHHHhcCCCCCEEeCcCC
Confidence            11111125667777776544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.69  E-value=6.4e-17  Score=157.53  Aligned_cols=291  Identities=12%  Similarity=0.072  Sum_probs=190.4

Q ss_pred             hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      .+++++|++..+    ....++. +..+++|++|++++|.+.+.+.  ...+++|++|+++++.+.+-  . .+..+++|
T Consensus        43 l~~L~~L~l~~~----~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L  112 (347)
T 4fmz_A           43 LESITKLVVAGE----KVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--S-ALQNLTNL  112 (347)
T ss_dssp             HTTCSEEECCSS----CCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--G-GGTTCTTC
T ss_pred             cccccEEEEeCC----ccccchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--h-HHcCCCcC
Confidence            468888888775    2334443 5678899999999998866653  66788999999998877652  1 26788999


Q ss_pred             ceeEeeeecCcceEeecCCCCCcEEEEccCCCCceE--EEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echh
Q 036097          215 EDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEV--NINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSV  289 (481)
Q Consensus       215 e~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~--~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~  289 (481)
                      ++|++++|.--....+..+++|+.|++++|.....+  ...+++|+.|+++++.......+..+++|+.|+++   +.+ 
T Consensus       113 ~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-  191 (347)
T 4fmz_A          113 RELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED-  191 (347)
T ss_dssp             SEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCC-
T ss_pred             CEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccc-
Confidence            999998875222112556788999999888522221  23567889999888843333337888889998876   222 


Q ss_pred             hhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcccc--cccCCCcceeEecccccCCcchhhhhcc
Q 036097          290 VDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV--EIETPNLSKCKYNGGVVPFSSSTALKLL  367 (481)
Q Consensus       290 ~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~--~~~~p~L~~L~~~~~~~~~~~~~~l~~~  367 (481)
                       +.. +..+++|+.|+++++.... +.. ...+++|++|++++|. +..+  ....++|++|.++++.+....  .+ ..
T Consensus       192 -~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~--~~-~~  263 (347)
T 4fmz_A          192 -ISP-LASLTSLHYFTAYVNQITD-ITP-VANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQISDIN--AV-KD  263 (347)
T ss_dssp             -CGG-GGGCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCG--GG-TT
T ss_pred             -ccc-ccCCCccceeecccCCCCC-Cch-hhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCccCCCh--hH-hc
Confidence             112 6778889999988832211 111 3346789999998875 3322  345688999988887665431  12 37


Q ss_pred             CCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHH
Q 036097          368 ETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVV  447 (481)
Q Consensus       368 ~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l  447 (481)
                      +++|+.+++..+.-..     + ..+..+.+|+.|+++++.....+...    +..+++|++|+++.+.-..      ..
T Consensus       264 l~~L~~L~l~~n~l~~-----~-~~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~~------~~  327 (347)
T 4fmz_A          264 LTKLKMLNVGSNQISD-----I-SVLNNLSQLNSLFLNNNQLGNEDMEV----IGGLTNLTTLFLSQNHITD------IR  327 (347)
T ss_dssp             CTTCCEEECCSSCCCC-----C-GGGGGCTTCSEEECCSSCCCGGGHHH----HHTCTTCSEEECCSSSCCC------CG
T ss_pred             CCCcCEEEccCCccCC-----C-hhhcCCCCCCEEECcCCcCCCcChhH----hhccccCCEEEccCCcccc------cc
Confidence            7888888886654110     1 23344444455888876544333221    3446789999998876322      11


Q ss_pred             hhhhhcCcccceEEE
Q 036097          448 DGLLWMSPHVDTVTI  462 (481)
Q Consensus       448 ~~ll~~~p~L~~L~l  462 (481)
                      +  +..+|+|+.|++
T Consensus       328 ~--~~~l~~L~~L~l  340 (347)
T 4fmz_A          328 P--LASLSKMDSADF  340 (347)
T ss_dssp             G--GGGCTTCSEESS
T ss_pred             C--hhhhhccceeeh
Confidence            2  667899998887

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.69  E-value=2.1e-17  Score=174.03  Aligned_cols=281  Identities=10%  Similarity=0.065  Sum_probs=168.1

Q ss_pred             hCCeeEEEEEEeecCCcccc------------------cCCccc--CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEe
Q 036097          135 ESTVKELELHTILRGDRLYH------------------LPQMVV--CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRL  194 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~~------------------l~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L  194 (481)
                      .+++++|+++.+  .  ...                  +|..+.  ++++|++|+|++|.+....+.....+++|++|++
T Consensus       205 l~~L~~L~Ls~n--~--l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  280 (636)
T 4eco_A          205 LTKLRQFYMGNS--P--FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV  280 (636)
T ss_dssp             CTTCCEEEEESC--C--CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred             ccCCCEEECcCC--c--cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence            468999999987  2  233                  999998  9999999999999876655556778999999999


Q ss_pred             ccee-cChHHHHHHhc------CCCccceeEeeeecCcceE----eecCCCCCcEEEEccCCCCce--EEEecCCccEEE
Q 036097          195 AQVR-ASDQVIENLVA------GCPLIEDLIFEFCEGLKSI----KLFGRSKLRDIKIKGGREAEE--VNINALNGHSIT  261 (481)
Q Consensus       195 ~~~~-~~~~~l~~l~~------~~p~Le~L~l~~~~~~~~l----~i~~~~~L~~L~l~~~~~~~~--~~~~~p~L~~L~  261 (481)
                      ++|. ++...+..-+.      .+++|++|++++|.-- .+    .+..+++|+.|+++++.....  ....+++|+.|+
T Consensus       281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~  359 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLN  359 (636)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEE
T ss_pred             cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEE
Confidence            9998 76523333233      4599999999988532 33    355678999999998862211  223567888888


Q ss_pred             EcCC-CCCCceeccCCCC-CcEEEEE---echhhhHHhhhc--CCcccEEEeccccccccccc-cc------ccCCcccE
Q 036097          262 VVSP-LPSGKINEVSCKN-LKSLFLC---ITSVVDETLSYH--ITRLVVLECLGLIVCFELQN-IK------ISSPSLKR  327 (481)
Q Consensus       262 l~~~-~~~~~~~~~~~~~-L~~L~l~---~~~~~~~~~~~~--~~~L~~L~L~~~~~c~~l~~-l~------~~~~~L~~  327 (481)
                      ++++ ....+..+..+++ |+.|+++   ++  .++..+..  +++|+.|++++|.+...... +.      ...++|+.
T Consensus       360 L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~  437 (636)
T 4eco_A          360 LAYNQITEIPANFCGFTEQVENLSFAHNKLK--YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS  437 (636)
T ss_dssp             CCSSEEEECCTTSEEECTTCCEEECCSSCCS--SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred             CCCCccccccHhhhhhcccCcEEEccCCcCc--ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence            8887 2344445777888 8888877   33  23333333  34778888777443221111 11      12346777


Q ss_pred             EEecCCCCccccc----ccCCCcceeEecccccCCcchhhhh------ccCCCccEEEEeeChhhHHHHHHHHhhcc--c
Q 036097          328 LEIFKCTKLAAVE----IETPNLSKCKYNGGVVPFSSSTALK------LLETDLNLYTINFDPQWYVKFIELIAKFH--Q  395 (481)
Q Consensus       328 L~l~~c~~l~~~~----~~~p~L~~L~~~~~~~~~~~~~~l~------~~~~~L~~l~l~~~~~~~~~~~~~~~~l~--~  395 (481)
                      |++++|. +..++    ...++|+.|.++++.+.......+.      .++++|+.+++..+.-     ..++..+.  .
T Consensus       438 L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-----~~lp~~~~~~~  511 (636)
T 4eco_A          438 INLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-----TKLSDDFRATT  511 (636)
T ss_dssp             EECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCC-----CBCCGGGSTTT
T ss_pred             EECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcC-----CccChhhhhcc
Confidence            7777654 22322    2356666666666554422111010      0112566666644431     11222332  3


Q ss_pred             ceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEE
Q 036097          396 WSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFS  433 (481)
Q Consensus       396 L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  433 (481)
                      +.+|+.|+++.+....+|+.     +..+++|+.|+++
T Consensus       512 l~~L~~L~Ls~N~l~~ip~~-----~~~l~~L~~L~Ls  544 (636)
T 4eco_A          512 LPYLVGIDLSYNSFSKFPTQ-----PLNSSTLKGFGIR  544 (636)
T ss_dssp             CTTCCEEECCSSCCSSCCCG-----GGGCSSCCEEECC
T ss_pred             CCCcCEEECCCCCCCCcChh-----hhcCCCCCEEECC
Confidence            34444466665554444433     2334556666664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.68  E-value=4.5e-17  Score=165.74  Aligned_cols=232  Identities=16%  Similarity=0.056  Sum_probs=100.4

Q ss_pred             CCeeEEEEEEeecCCccccc-CCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHL-PQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      .+++.|+++.+    ....+ +..+..+++|++|+|++|.+....+.....+++|++|+|+++.+..- ....+..+++|
T Consensus        32 ~~l~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L  106 (477)
T 2id5_A           32 TETRLLDLGKN----RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNL  106 (477)
T ss_dssp             TTCSEEECCSS----CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTC
T ss_pred             CCCcEEECCCC----ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCC
Confidence            34555555543    12222 23344556666666666655444333444556666666665554321 11123455566


Q ss_pred             ceeEeeeecCcce--EeecCCCCCcEEEEccCCCCc---eEEEecCCccEEEEcCCC-CC-CceeccCCCCCcEEEEE--
Q 036097          215 EDLIFEFCEGLKS--IKLFGRSKLRDIKIKGGREAE---EVNINALNGHSITVVSPL-PS-GKINEVSCKNLKSLFLC--  285 (481)
Q Consensus       215 e~L~l~~~~~~~~--l~i~~~~~L~~L~l~~~~~~~---~~~~~~p~L~~L~l~~~~-~~-~~~~~~~~~~L~~L~l~--  285 (481)
                      ++|++++|.-...  ..+..+++|+.|+++++....   .....+++|+.|+++++. .. ....+..+++|+.|++.  
T Consensus       107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  186 (477)
T 2id5_A          107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL  186 (477)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred             CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence            6666655532111  122334555566555543110   011134555555555551 11 12234555555555554  


Q ss_pred             -echhhhHHhhhcCCcccEEEeccccccccccccc---ccCCcccEEEecCCCCccccc----ccCCCcceeEecccccC
Q 036097          286 -ITSVVDETLSYHITRLVVLECLGLIVCFELQNIK---ISSPSLKRLEIFKCTKLAAVE----IETPNLSKCKYNGGVVP  357 (481)
Q Consensus       286 -~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~---~~~~~L~~L~l~~c~~l~~~~----~~~p~L~~L~~~~~~~~  357 (481)
                       +.. .....+..+++|+.|++++   |..+..+.   ....+|+.|++++|. +..+.    ..+++|+.|.++++.+.
T Consensus       187 ~i~~-~~~~~~~~l~~L~~L~l~~---~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~  261 (477)
T 2id5_A          187 NINA-IRDYSFKRLYRLKVLEISH---WPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPIS  261 (477)
T ss_dssp             CCCE-ECTTCSCSCTTCCEEEEEC---CTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred             cCcE-eChhhcccCcccceeeCCC---CccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCC
Confidence             111 1112234455555555555   33322221   112355555555543 22221    23455555555554433


Q ss_pred             CcchhhhhccCCCccEEEEee
Q 036097          358 FSSSTALKLLETDLNLYTINF  378 (481)
Q Consensus       358 ~~~~~~l~~~~~~L~~l~l~~  378 (481)
                      ......+ ..+++|+.+++..
T Consensus       262 ~~~~~~~-~~l~~L~~L~L~~  281 (477)
T 2id5_A          262 TIEGSML-HELLRLQEIQLVG  281 (477)
T ss_dssp             EECTTSC-TTCTTCCEEECCS
T ss_pred             ccChhhc-cccccCCEEECCC
Confidence            2221111 1445555555533

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=3.7e-17  Score=175.96  Aligned_cols=311  Identities=11%  Similarity=0.034  Sum_probs=194.9

Q ss_pred             hCCeeEEEEEEeecCCccc----------------ccCCccc--CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecc
Q 036097          135 ESTVKELELHTILRGDRLY----------------HLPQMVV--CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQ  196 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~----------------~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~  196 (481)
                      .++++.|+|+.+  .....                .+|..+.  .+++|++|+|++|.+....+.....+++|+.|+|++
T Consensus       447 L~~L~~L~Ls~N--~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~  524 (876)
T 4ecn_A          447 LTKLQIIYFANS--PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC  524 (876)
T ss_dssp             CTTCCEEEEESC--CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred             CCCCCEEECcCC--cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence            478999999987  32221                2898887  899999999999987655545677899999999999


Q ss_pred             ee-cChHHHHH----H---hcCCCccceeEeeeecCcceE----eecCCCCCcEEEEccCCC--CceEEEecCCccEEEE
Q 036097          197 VR-ASDQVIEN----L---VAGCPLIEDLIFEFCEGLKSI----KLFGRSKLRDIKIKGGRE--AEEVNINALNGHSITV  262 (481)
Q Consensus       197 ~~-~~~~~l~~----l---~~~~p~Le~L~l~~~~~~~~l----~i~~~~~L~~L~l~~~~~--~~~~~~~~p~L~~L~l  262 (481)
                      |. ++...++.    +   +..+|+|++|++++|..- .+    .+..+++|+.|+++++..  +. ....+++|+.|++
T Consensus       525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~L  602 (876)
T 4ecn_A          525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKL  602 (876)
T ss_dssp             CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEEC
T ss_pred             CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEEC
Confidence            97 76412222    1   245679999999998533 33    245679999999999872  22 2235688999999


Q ss_pred             cCC-CCCCceeccCCCC-CcEEEEE---echhhhHHhhhcC--CcccEEEeccccccccccccc-----ccCCcccEEEe
Q 036097          263 VSP-LPSGKINEVSCKN-LKSLFLC---ITSVVDETLSYHI--TRLVVLECLGLIVCFELQNIK-----ISSPSLKRLEI  330 (481)
Q Consensus       263 ~~~-~~~~~~~~~~~~~-L~~L~l~---~~~~~~~~~~~~~--~~L~~L~L~~~~~c~~l~~l~-----~~~~~L~~L~l  330 (481)
                      +++ ....+..+..+++ |+.|+++   ++  .++..+...  ++|+.|++++|.+...+..+.     ...++|+.|++
T Consensus       603 s~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~L  680 (876)
T 4ecn_A          603 DYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL  680 (876)
T ss_dssp             CSSCCSCCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEEC
T ss_pred             cCCccccchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEc
Confidence            988 3345556888888 9999987   33  333444444  348999998865443333222     12347888888


Q ss_pred             cCCCCccccc----ccCCCcceeEecccccCCcchhhhh------ccCCCccEEEEeeChhhHHHHHHHHhhcc--ccee
Q 036097          331 FKCTKLAAVE----IETPNLSKCKYNGGVVPFSSSTALK------LLETDLNLYTINFDPQWYVKFIELIAKFH--QWSK  398 (481)
Q Consensus       331 ~~c~~l~~~~----~~~p~L~~L~~~~~~~~~~~~~~l~------~~~~~L~~l~l~~~~~~~~~~~~~~~~l~--~L~~  398 (481)
                      ++|. +..++    ..+++|+.|.++++.+.......+.      .++++|+.|++..+.-     ..++..+.  .+.+
T Consensus       681 s~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L-----~~lp~~l~~~~l~~  754 (876)
T 4ecn_A          681 SYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-----TSLSDDFRATTLPY  754 (876)
T ss_dssp             CSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCC-----CCCCGGGSTTTCTT
T ss_pred             cCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCC-----ccchHHhhhccCCC
Confidence            8764 33322    2467788888877655422211110      1233777777765541     12333333  4444


Q ss_pred             eEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097          399 VLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       399 l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                      |+.|++++|....+|..     +..+++|+.|+|+.+.......+...++..+.++|+|+.|.+
T Consensus       755 L~~L~Ls~N~L~~lp~~-----l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~L  813 (876)
T 4ecn_A          755 LSNMDVSYNCFSSFPTQ-----PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI  813 (876)
T ss_dssp             CCEEECCSSCCSSCCCG-----GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEEC
T ss_pred             cCEEEeCCCCCCccchh-----hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEEC
Confidence            55577776655555544     334667777777653200000002223445566777777777

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.68  E-value=2.1e-17  Score=172.75  Aligned_cols=334  Identities=11%  Similarity=0.034  Sum_probs=213.2

Q ss_pred             eeEEEEEEEeeCChhhHHHHHHH-HHhCCeeEEEEEEeecCCcccc---cCCcccCCCCccEEEEcCeeccCCCCC----
Q 036097          110 VEKLRFKASFLDDSELADRCVCY-AIESTVKELELHTILRGDRLYH---LPQMVVCSETVNVLDLFGCILLEFPGR----  181 (481)
Q Consensus       110 l~~l~l~~~~~~~~~~~~~~~~~-~~~~~l~~L~L~~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~~~~~~~~----  181 (481)
                      ++.+.+......   ....+... ...+++++|+|..+  ......   ++.....+++|++|+++++.+......    
T Consensus       140 L~~L~L~~~~~~---~~~~l~~~~~~~~~L~~L~L~~~--~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~  214 (592)
T 3ogk_B          140 LETLKLDKCSGF---TTDGLLSIVTHCRKIKTLLMEES--SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET  214 (592)
T ss_dssp             CCEEEEESCEEE---EHHHHHHHHHHCTTCSEEECTTC--EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH
T ss_pred             CcEEECcCCCCc---CHHHHHHHHhhCCCCCEEECccc--cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH
Confidence            888888754211   11222222 24489999999876  111111   333445789999999999887422211    


Q ss_pred             CCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeec----------------CcceEee------------cCC
Q 036097          182 NSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCE----------------GLKSIKL------------FGR  233 (481)
Q Consensus       182 ~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~----------------~~~~l~i------------~~~  233 (481)
                      ....+++|++|++.++.+.+  +...+..+++|++|.++.+.                .++.+.+            ..+
T Consensus       215 ~~~~~~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~  292 (592)
T 3ogk_B          215 IARNCRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFA  292 (592)
T ss_dssp             HHHHCTTCCEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGG
T ss_pred             HHhhCCCCcEEeccCccHHH--HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhc
Confidence            22468999999999987743  44667788999999997431                1111211            235


Q ss_pred             CCCcEEEEccCCC-Cc---eEEEecCCccEEEEcCCC--CCCceeccCCCCCcEEEEE--------------echhhhHH
Q 036097          234 SKLRDIKIKGGRE-AE---EVNINALNGHSITVVSPL--PSGKINEVSCKNLKSLFLC--------------ITSVVDET  293 (481)
Q Consensus       234 ~~L~~L~l~~~~~-~~---~~~~~~p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~--------------~~~~~~~~  293 (481)
                      ++|++|++++|.. ..   .+...+++|+.|++.++.  .........|++|++|++.              +++..+..
T Consensus       293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~  372 (592)
T 3ogk_B          293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA  372 (592)
T ss_dssp             GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred             CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence            7999999999871 11   122468999999998552  2233445789999999987              33445666


Q ss_pred             hhhcCCcccEEEecccccc-cccccccccCCcccEEEecC---CCCccc---------ccccCCCcceeEeccc--ccCC
Q 036097          294 LSYHITRLVVLECLGLIVC-FELQNIKISSPSLKRLEIFK---CTKLAA---------VEIETPNLSKCKYNGG--VVPF  358 (481)
Q Consensus       294 ~~~~~~~L~~L~L~~~~~c-~~l~~l~~~~~~L~~L~l~~---c~~l~~---------~~~~~p~L~~L~~~~~--~~~~  358 (481)
                      +...+++|+.|++..+.+. ..+..+...+++|++|+++.   |+.+.+         +...+++|++|.++.+  .+..
T Consensus       373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~  452 (592)
T 3ogk_B          373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD  452 (592)
T ss_dssp             HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred             HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence            7788999999999442211 11223344588999999984   455554         2456899999999542  3454


Q ss_pred             cchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeecee-eechhhhccCCCCCCCCceEEEEeccc
Q 036097          359 SSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESV-IVPKELRQILPPPLSGVKHLNFSISIP  437 (481)
Q Consensus       359 ~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~  437 (481)
                      .....+...+++|+.+++..+.--...+..+...+++|+.   |+++++... .....+    ...+++|++|+++.+. 
T Consensus       453 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~---L~l~~n~l~~~~~~~~----~~~l~~L~~L~ls~n~-  524 (592)
T 3ogk_B          453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQK---LEMRGCCFSERAIAAA----VTKLPSLRYLWVQGYR-  524 (592)
T ss_dssp             HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCE---EEEESCCCBHHHHHHH----HHHCSSCCEEEEESCB-
T ss_pred             HHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCe---eeccCCCCcHHHHHHH----HHhcCccCeeECcCCc-
Confidence            4444555578999999998765222234445556665555   999977522 111111    2236789999999987 


Q ss_pred             chhhhHHHHHhhhhhcCcccceEEE
Q 036097          438 FKKFAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       438 ~~~~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                      .++    ..+..+...+|.+....+
T Consensus       525 it~----~~~~~l~~~~p~l~~~~~  545 (592)
T 3ogk_B          525 ASM----TGQDLMQMARPYWNIELI  545 (592)
T ss_dssp             CCT----TCTTGGGGCCTTEEEEEE
T ss_pred             CCH----HHHHHHHHhCCCcEEEEe
Confidence            332    234455667898877666

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.66  E-value=1.7e-16  Score=166.52  Aligned_cols=56  Identities=16%  Similarity=-0.026  Sum_probs=26.3

Q ss_pred             ecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echh-hhHHhhhcCCcccEEEecc
Q 036097          253 NALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSV-VDETLSYHITRLVVLECLG  308 (481)
Q Consensus       253 ~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~-~~~~~~~~~~~L~~L~L~~  308 (481)
                      .+++|+.|+++++.......+..+++|+.|+++   ++.. .....+..+++|+.|++++
T Consensus       326 ~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~  385 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF  385 (606)
T ss_dssp             CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS
T ss_pred             CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCC
Confidence            344455555554422222244455666666655   2211 1123345556666666665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.65  E-value=5.9e-16  Score=156.98  Aligned_cols=268  Identities=15%  Similarity=0.096  Sum_probs=149.5

Q ss_pred             ccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcE
Q 036097          159 VVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRD  238 (481)
Q Consensus       159 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~  238 (481)
                      +..+++|++|++++|.+...++  ...+++|++|+++++.+.+-.   .+..+++|++|++.++. .....+..+++|+.
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~  181 (466)
T 1o6v_A          108 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSFGNQV-TDLKPLANLTTLER  181 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG---GGTTCTTCSEEEEEESC-CCCGGGTTCTTCCE
T ss_pred             hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh---hhccCCcccEeecCCcc-cCchhhccCCCCCE
Confidence            3445555555555554443321  334555555555555443311   13445555555554221 01112344566777


Q ss_pred             EEEccCC--CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccccccc
Q 036097          239 IKIKGGR--EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCF  313 (481)
Q Consensus       239 L~l~~~~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~  313 (481)
                      |++++|.  .+.. ...+++|++|+++++.-.....+..+++|+.|+++   +.+  + ..+..+++|+.|+++++.+..
T Consensus       182 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l~~  257 (466)
T 1o6v_A          182 LDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--I-GTLASLTNLTDLDLANNQISN  257 (466)
T ss_dssp             EECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCC
T ss_pred             EECcCCcCCCChh-hccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc--c-hhhhcCCCCCEEECCCCcccc
Confidence            7776665  1111 12456777777777632222236667777777766   222  1 234667788888887733211


Q ss_pred             ccccccccCCcccEEEecCCCCcccc--cccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHh
Q 036097          314 ELQNIKISSPSLKRLEIFKCTKLAAV--EIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIA  391 (481)
Q Consensus       314 ~l~~l~~~~~~L~~L~l~~c~~l~~~--~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~  391 (481)
                       +.. ...+++|+.|++++|. +..+  ....++|+.|.++++.+.....  + ..+++|+.+++..+.-..     . .
T Consensus       258 -~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~-~~l~~L~~L~L~~n~l~~-----~-~  325 (466)
T 1o6v_A          258 -LAP-LSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNENQLEDISP--I-SNLKNLTYLTLYFNNISD-----I-S  325 (466)
T ss_dssp             -CGG-GTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCSCCGG--G-GGCTTCSEEECCSSCCSC-----C-G
T ss_pred             -chh-hhcCCCCCEEECCCCc-cCccccccCCCccCeEEcCCCcccCchh--h-cCCCCCCEEECcCCcCCC-----c-h
Confidence             111 2345788888888764 2221  3356788888888876654322  2 378889988887664110     1 0


Q ss_pred             hcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097          392 KFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       392 ~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                      .+..+.+|+.|+++++....++ .     +..+++|+.|+++.+.-.+      ..+  +..+|+|+.|.+
T Consensus       326 ~~~~l~~L~~L~l~~n~l~~~~-~-----l~~l~~L~~L~l~~n~l~~------~~~--~~~l~~L~~L~l  382 (466)
T 1o6v_A          326 PVSSLTKLQRLFFYNNKVSDVS-S-----LANLTNINWLSAGHNQISD------LTP--LANLTRITQLGL  382 (466)
T ss_dssp             GGGGCTTCCEEECCSSCCCCCG-G-----GTTCTTCCEEECCSSCCCB------CGG--GTTCTTCCEEEC
T ss_pred             hhccCccCCEeECCCCccCCch-h-----hccCCCCCEEeCCCCccCc------cch--hhcCCCCCEEec
Confidence            1334444445888877554443 2     4567889999998776322      123  678999999998

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.64  E-value=1e-16  Score=162.00  Aligned_cols=308  Identities=12%  Similarity=0.048  Sum_probs=157.4

Q ss_pred             CCeeEEEEEEeecCCccccc-CCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHH-HHhcCCCc
Q 036097          136 STVKELELHTILRGDRLYHL-PQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIE-NLVAGCPL  213 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~-~l~~~~p~  213 (481)
                      +++++|+++.+  .. ...+ +..+..+++|++|+|++|.+...++.....+++|++|++++|.+.+..+. ..+..+++
T Consensus        54 ~~L~~L~L~~n--~~-~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~  130 (455)
T 3v47_A           54 QDLQFLKVEQQ--TP-GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS  130 (455)
T ss_dssp             TTCCEEECCCC--ST-TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTT
T ss_pred             ccccEEECcCC--cc-cceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCccc
Confidence            45666666554  11 1122 33344566666666666666554444455566666666666666432222 22455666


Q ss_pred             cceeEeeeecCcceE--e-ecCCCCCcEEEEccCCCCc----eE-EEecCCccEEEEcCCC-CCC-c--------eeccC
Q 036097          214 IEDLIFEFCEGLKSI--K-LFGRSKLRDIKIKGGREAE----EV-NINALNGHSITVVSPL-PSG-K--------INEVS  275 (481)
Q Consensus       214 Le~L~l~~~~~~~~l--~-i~~~~~L~~L~l~~~~~~~----~~-~~~~p~L~~L~l~~~~-~~~-~--------~~~~~  275 (481)
                      |++|++++|.-....  . +..+++|+.|+++++....    .+ ....++|+.++++++. ... .        ..+..
T Consensus       131 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~  210 (455)
T 3v47_A          131 LEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK  210 (455)
T ss_dssp             CCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTT
T ss_pred             CCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccc
Confidence            777766666321111  1 3445666666666664110    00 0112456666666551 110 0        11234


Q ss_pred             CCCCcEEEEE---echhhhHHhhh--cCCcccEEEeccccccc------cccc------ccccCCcccEEEecCCCCcc-
Q 036097          276 CKNLKSLFLC---ITSVVDETLSY--HITRLVVLECLGLIVCF------ELQN------IKISSPSLKRLEIFKCTKLA-  337 (481)
Q Consensus       276 ~~~L~~L~l~---~~~~~~~~~~~--~~~~L~~L~L~~~~~c~------~l~~------l~~~~~~L~~L~l~~c~~l~-  337 (481)
                      +++|+.|+++   +++.....+..  ..++|+.|+++++....      .+..      .....++|+.|++++|.-.. 
T Consensus       211 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  290 (455)
T 3v47_A          211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL  290 (455)
T ss_dssp             TCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE
T ss_pred             cceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccccc
Confidence            5677777766   33322222221  23667777776621100      0000      01113577888887764221 


Q ss_pred             --cccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHH-HhhcccceeeEEEEEEeeceeeech
Q 036097          338 --AVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIEL-IAKFHQWSKVLNLLSECGESVIVPK  414 (481)
Q Consensus       338 --~~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~-~~~l~~L~~l~~L~i~~~~~~~~~~  414 (481)
                        ......++|+.|.++++.+.......+. .+++|+.+++..+.-     ..+ +..+.++.+|+.|+++.+....+++
T Consensus       291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l-----~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  364 (455)
T 3v47_A          291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFW-GLTHLLKLNLSQNFL-----GSIDSRMFENLDKLEVLDLSYNHIRALGD  364 (455)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCC-----CEECGGGGTTCTTCCEEECCSSCCCEECT
T ss_pred             chhhcccCCCCCEEECCCCcccccChhHhc-CcccCCEEECCCCcc-----CCcChhHhcCcccCCEEECCCCcccccCh
Confidence              1233457788888877666543332222 677788887765531     111 2334444555558887665544421


Q ss_pred             hhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097          415 ELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       415 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                          ..+..+++|++|+++.+.-..      ..+..+..+|+|+.|.+
T Consensus       365 ----~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~l  402 (455)
T 3v47_A          365 ----QSFLGLPNLKELALDTNQLKS------VPDGIFDRLTSLQKIWL  402 (455)
T ss_dssp             ----TTTTTCTTCCEEECCSSCCSC------CCTTTTTTCTTCCEEEC
T ss_pred             ----hhccccccccEEECCCCcccc------CCHhHhccCCcccEEEc
Confidence                124556778888887764221      12345567788888887

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.64  E-value=9.2e-16  Score=149.29  Aligned_cols=274  Identities=13%  Similarity=0.028  Sum_probs=196.2

Q ss_pred             cCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE-eecCCCCCcE
Q 036097          160 VCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-KLFGRSKLRD  238 (481)
Q Consensus       160 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-~i~~~~~L~~  238 (481)
                      ..+++|++|+++++.+...+  ....+++|++|+++++.+.+-..   +..+++|++|++++|. +..+ .+..+++|+.
T Consensus        41 ~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~  114 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP---LSNLVKLTNLYIGTNK-ITDISALQNLTNLRE  114 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSE
T ss_pred             hhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh---hhcCCcCCEEEccCCc-ccCchHHcCCCcCCE
Confidence            35789999999999987665  36679999999999998865221   7889999999999984 3332 3566899999


Q ss_pred             EEEccCC--CCceEEEecCCccEEEEcCC-CCCCceeccCCCCCcEEEEE-echhhhHHhhhcCCcccEEEecccccccc
Q 036097          239 IKIKGGR--EAEEVNINALNGHSITVVSP-LPSGKINEVSCKNLKSLFLC-ITSVVDETLSYHITRLVVLECLGLIVCFE  314 (481)
Q Consensus       239 L~l~~~~--~~~~~~~~~p~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~L~~L~L~~~~~c~~  314 (481)
                      |+++++.  .... ...+++|+.|+++++ .......+..+++|++|++. .....+.. +..+++|+.|+++++... .
T Consensus       115 L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~-~  191 (347)
T 4fmz_A          115 LYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIE-D  191 (347)
T ss_dssp             EECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCC-C
T ss_pred             EECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccc-c
Confidence            9999987  2222 346789999999998 33444458999999999987 11111111 678999999999994321 1


Q ss_pred             cccccccCCcccEEEecCCCCcccc--cccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhh
Q 036097          315 LQNIKISSPSLKRLEIFKCTKLAAV--EIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAK  392 (481)
Q Consensus       315 l~~l~~~~~~L~~L~l~~c~~l~~~--~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~  392 (481)
                      +.. ...+++|+.|++++|. +..+  ....++|++|.++++.+.....   ...+++|+.+++..+.-..     + ..
T Consensus       192 ~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~-----~-~~  260 (347)
T 4fmz_A          192 ISP-LASLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISD-----I-NA  260 (347)
T ss_dssp             CGG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCC-----C-GG
T ss_pred             ccc-ccCCCccceeecccCC-CCCCchhhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCccCC-----C-hh
Confidence            111 3446899999999875 3332  3467899999999987764432   2488999999997764111     1 33


Q ss_pred             cccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE-eec
Q 036097          393 FHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI-EYG  465 (481)
Q Consensus       393 l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l-~~~  465 (481)
                      +..+.+|+.|+++++....++ .     +..+++|+.|+++.+.-..      ..+..+..+|+|+.|.+ ++.
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~-~-----~~~l~~L~~L~L~~n~l~~------~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          261 VKDLTKLKMLNVGSNQISDIS-V-----LNNLSQLNSLFLNNNQLGN------EDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG-G-----GGGCTTCSEEECCSSCCCG------GGHHHHHTCTTCSEEECCSSS
T ss_pred             HhcCCCcCEEEccCCccCCCh-h-----hcCCCCCCEEECcCCcCCC------cChhHhhccccCCEEEccCCc
Confidence            455555556999977655554 2     4457899999999886422      23455678999999999 554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.63  E-value=1.4e-16  Score=167.08  Aligned_cols=156  Identities=12%  Similarity=0.008  Sum_probs=72.9

Q ss_pred             hhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcc---cccccCCCcceeEecccccCCcchhhhhccCCCc
Q 036097          295 SYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLA---AVEIETPNLSKCKYNGGVVPFSSSTALKLLETDL  371 (481)
Q Consensus       295 ~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~---~~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L  371 (481)
                      +..+++|+.|+++++.+. .+......+++|+.|++++|.--.   ......++|++|.++++.+...........+++|
T Consensus       274 ~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  352 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL  352 (606)
T ss_dssp             TTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred             hccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence            344555666666653211 111111224566666666654111   1223456666666666543311111101256667


Q ss_pred             cEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhh
Q 036097          372 NLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLL  451 (481)
Q Consensus       372 ~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll  451 (481)
                      +.+++..+.-..  ....+..+.++.+|+.|+++.+.....+.    ..+..+++|++|+++.+.-...     ..+..+
T Consensus       353 ~~L~l~~n~l~~--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~  421 (606)
T 3t6q_A          353 RELDLSHDDIET--SDCCNLQLRNLSHLQSLNLSYNEPLSLKT----EAFKECPQLELLDLAFTRLKVK-----DAQSPF  421 (606)
T ss_dssp             CEEECCSSCCCE--EEESTTTTTTCTTCCEEECCSCSCEEECT----TTTTTCTTCSEEECTTCCEECC-----TTCCTT
T ss_pred             CEEECCCCcccc--ccCcchhcccCCCCCEEECCCCcCCcCCH----HHhcCCccCCeEECCCCcCCCc-----ccchhh
Confidence            777665443100  00001233444444457776554433321    1244566777777766542111     112345


Q ss_pred             hcCcccceEEE
Q 036097          452 WMSPHVDTVTI  462 (481)
Q Consensus       452 ~~~p~L~~L~l  462 (481)
                      ..+++|+.|.+
T Consensus       422 ~~l~~L~~L~l  432 (606)
T 3t6q_A          422 QNLHLLKVLNL  432 (606)
T ss_dssp             TTCTTCCEEEC
T ss_pred             hCcccCCEEEC
Confidence            67788888888

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.63  E-value=1.4e-15  Score=154.11  Aligned_cols=289  Identities=13%  Similarity=0.054  Sum_probs=164.1

Q ss_pred             hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      .+++++|+++.+    ....++. +..+++|++|++++|.+...++  ...+++|++|+++++.+.+-..   +..+++|
T Consensus        67 l~~L~~L~Ls~n----~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L  136 (466)
T 1o6v_A           67 LNNLTQINFSNN----QLTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP---LKNLTNL  136 (466)
T ss_dssp             CTTCCEEECCSS----CCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG---GTTCTTC
T ss_pred             hcCCCEEECCCC----ccCCchh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH---HcCCCCC
Confidence            467777777765    2333443 5667778888887777755543  5567777888877776654211   5677778


Q ss_pred             ceeEeeeecCcceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhh
Q 036097          215 EDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVD  291 (481)
Q Consensus       215 e~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~  291 (481)
                      ++|++++|.-.....+..+++|+.|.+.++.........+++|+.|+++++.-.....+..+++|+.|+++   +.+.. 
T Consensus       137 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~-  215 (466)
T 1o6v_A          137 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT-  215 (466)
T ss_dssp             SEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG-
T ss_pred             CEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccc-
Confidence            88877777421111345567777777764431111123457777777777732223346777777777776   22211 


Q ss_pred             HHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcccc--cccCCCcceeEecccccCCcchhhhhccCC
Q 036097          292 ETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV--EIETPNLSKCKYNGGVVPFSSSTALKLLET  369 (481)
Q Consensus       292 ~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~--~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~  369 (481)
                       . +..+++|+.|+++++.+.. +. ....+++|+.|++++|. +..+  ...+++|+.|.++++.+.....  + ..++
T Consensus       216 -~-~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~-~~l~  287 (466)
T 1o6v_A          216 -P-LGILTNLDELSLNGNQLKD-IG-TLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGANQISNISP--L-AGLT  287 (466)
T ss_dssp             -G-GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCGG--G-TTCT
T ss_pred             -c-ccccCCCCEEECCCCCccc-ch-hhhcCCCCCEEECCCCc-cccchhhhcCCCCCEEECCCCccCcccc--c-cCCC
Confidence             1 4567777777777732211 11 12235677777777764 2221  2345777777777765543322  1 3667


Q ss_pred             CccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhh
Q 036097          370 DLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDG  449 (481)
Q Consensus       370 ~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~  449 (481)
                      +|+.+++..+.-.     .+ ..+..+.+|+.|+++.+.....+.      +..+++|+.|+++.+.-..       ++ 
T Consensus       288 ~L~~L~L~~n~l~-----~~-~~~~~l~~L~~L~L~~n~l~~~~~------~~~l~~L~~L~l~~n~l~~-------~~-  347 (466)
T 1o6v_A          288 ALTNLELNENQLE-----DI-SPISNLKNLTYLTLYFNNISDISP------VSSLTKLQRLFFYNNKVSD-------VS-  347 (466)
T ss_dssp             TCSEEECCSSCCS-----CC-GGGGGCTTCSEEECCSSCCSCCGG------GGGCTTCCEEECCSSCCCC-------CG-
T ss_pred             ccCeEEcCCCccc-----Cc-hhhcCCCCCCEEECcCCcCCCchh------hccCccCCEeECCCCccCC-------ch-
Confidence            7777777554411     00 012333333447777664443332      2345677777777664222       11 


Q ss_pred             hhhcCcccceEEE
Q 036097          450 LLWMSPHVDTVTI  462 (481)
Q Consensus       450 ll~~~p~L~~L~l  462 (481)
                      -+..+++|+.|.+
T Consensus       348 ~l~~l~~L~~L~l  360 (466)
T 1o6v_A          348 SLANLTNINWLSA  360 (466)
T ss_dssp             GGTTCTTCCEEEC
T ss_pred             hhccCCCCCEEeC
Confidence            3556777777777

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.63  E-value=1.4e-16  Score=162.07  Aligned_cols=126  Identities=13%  Similarity=0.018  Sum_probs=54.4

Q ss_pred             cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE---eecCCC
Q 036097          158 MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI---KLFGRS  234 (481)
Q Consensus       158 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l---~i~~~~  234 (481)
                      .+..+++|++|+|++|.+...+......+++|++|+|+++.+... ....+..+++|++|++++|. +..+   .+..++
T Consensus        75 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~  152 (477)
T 2id5_A           75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLN  152 (477)
T ss_dssp             TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCT
T ss_pred             hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEEECCCCc-cceeChhhccCCC
Confidence            344455555555555555444433334455555555555544321 11123445555555555442 1111   223345


Q ss_pred             CCcEEEEccCCCC---ceEEEecCCccEEEEcCCC--CCCceeccCCCCCcEEEEE
Q 036097          235 KLRDIKIKGGREA---EEVNINALNGHSITVVSPL--PSGKINEVSCKNLKSLFLC  285 (481)
Q Consensus       235 ~L~~L~l~~~~~~---~~~~~~~p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~  285 (481)
                      +|+.|++++|..-   ......+++|+.|+++++.  ......+..+++|+.|+++
T Consensus       153 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  208 (477)
T 2id5_A          153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS  208 (477)
T ss_dssp             TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred             CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence            5555555554310   0011234455555555541  1122234455555555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.63  E-value=1.1e-16  Score=158.53  Aligned_cols=271  Identities=13%  Similarity=0.079  Sum_probs=151.6

Q ss_pred             CCeeEEEEEEeecCCcccccCC-cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHLPQ-MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      +++++|++..+    ....++. .+..+++|++|+|++|.+...++.....+++|++|+++++.+.. ....++..+++|
T Consensus        69 ~~L~~L~L~~n----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L  143 (390)
T 3o6n_A           69 RQVELLNLNDL----QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPKL  143 (390)
T ss_dssp             CCCSEEECTTS----CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             ccCcEEECCCC----cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc-CCHHHhcCCCCC
Confidence            56666666554    2223332 44556677777777776655554445566677777777666542 111224556677


Q ss_pred             ceeEeeeecCcceE---eecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---ech
Q 036097          215 EDLIFEFCEGLKSI---KLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITS  288 (481)
Q Consensus       215 e~L~l~~~~~~~~l---~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~  288 (481)
                      ++|++++|.- ..+   .+..+++|+.|+++++..-..-....++|+.++++++.-.   .+...++|+.|+++   ++.
T Consensus       144 ~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~L~~L~l~~n~l~~  219 (390)
T 3o6n_A          144 TTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS---TLAIPIAVEELDASHNSINV  219 (390)
T ss_dssp             CEEECCSSCC-CBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCS---EEECCSSCSEEECCSSCCCE
T ss_pred             cEEECCCCcc-CccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccc---ccCCCCcceEEECCCCeeee
Confidence            7777766632 111   2334566777777666411111123466666666665211   22344566777655   111


Q ss_pred             hhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchhhh
Q 036097          289 VVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTAL  364 (481)
Q Consensus       289 ~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l  364 (481)
                      .    .....++|+.|++++|.+...  .....+++|++|+++++. +..    .....++|+.|.++++.+.....  .
T Consensus       220 ~----~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~  290 (390)
T 3o6n_A          220 V----RGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNL--Y  290 (390)
T ss_dssp             E----ECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCCCEEEC--S
T ss_pred             c----cccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCcCcccCc--c
Confidence            1    012346788888888433211  223346789999998865 332    23356888999888876653221  0


Q ss_pred             hccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecc
Q 036097          365 KLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISI  436 (481)
Q Consensus       365 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  436 (481)
                      ...+++|+.+++..+.-.     .++..+..+.+|+.|+++++....++       +..+++|+.|+++.+.
T Consensus       291 ~~~l~~L~~L~L~~n~l~-----~~~~~~~~l~~L~~L~L~~N~i~~~~-------~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          291 GQPIPTLKVLDLSHNHLL-----HVERNQPQFDRLENLYLDHNSIVTLK-------LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             SSCCTTCCEEECCSSCCC-----CCGGGHHHHTTCSEEECCSSCCCCCC-------CCTTCCCSEEECCSSC
T ss_pred             cCCCCCCCEEECCCCcce-----ecCccccccCcCCEEECCCCccceeC-------chhhccCCEEEcCCCC
Confidence            126788888888666411     11222223333444888877555444       5567889999988775

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.62  E-value=8.1e-16  Score=160.78  Aligned_cols=150  Identities=14%  Similarity=0.078  Sum_probs=100.9

Q ss_pred             HhCCeeEEEEEEeecCCccccc-------------CCcccCCCCccEEEEcCeeccCCCCCCCc-CCCcceEEEecce-e
Q 036097          134 IESTVKELELHTILRGDRLYHL-------------PQMVVCSETVNVLDLFGCILLEFPGRNSV-KLPSLRKLRLAQV-R  198 (481)
Q Consensus       134 ~~~~l~~L~L~~~~~~~~~~~l-------------~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~L~~~-~  198 (481)
                      ..++++.|++..+. ......+             +.....+++|++|+|++|.+.+....... .+++|++|+|.+| .
T Consensus        64 ~~~~L~~L~L~~~~-~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~  142 (594)
T 2p1m_B           64 RFPKVRSVELKGKP-HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG  142 (594)
T ss_dssp             HCTTCCEEEEECSC-GGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred             hCCCceEEeccCCC-chhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence            34789999998862 1111111             11123688999999999876432111122 5899999999998 6


Q ss_pred             cChHHHHHHhcCCCccceeEeeeecCcce-----E-e-ecCCCCCcEEEEccCC-CC-----ceEEEecCCccEEEEcCC
Q 036097          199 ASDQVIENLVAGCPLIEDLIFEFCEGLKS-----I-K-LFGRSKLRDIKIKGGR-EA-----EEVNINALNGHSITVVSP  265 (481)
Q Consensus       199 ~~~~~l~~l~~~~p~Le~L~l~~~~~~~~-----l-~-i~~~~~L~~L~l~~~~-~~-----~~~~~~~p~L~~L~l~~~  265 (481)
                      +++..+..+...|++|++|++++|. +..     + . ...+++|+.|++++|. ..     ..+...+|+|++|+++++
T Consensus       143 ~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          143 FSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            6667788888899999999999885 221     1 1 1246899999999885 11     122234799999999987


Q ss_pred             CC--CCceeccCCCCCcEEEEE
Q 036097          266 LP--SGKINEVSCKNLKSLFLC  285 (481)
Q Consensus       266 ~~--~~~~~~~~~~~L~~L~l~  285 (481)
                      ..  ..+..+..+++|+.|++.
T Consensus       222 ~~~~~l~~~~~~~~~L~~L~l~  243 (594)
T 2p1m_B          222 VPLEKLATLLQRAPQLEELGTG  243 (594)
T ss_dssp             SCHHHHHHHHHHCTTCSEEECS
T ss_pred             CcHHHHHHHHhcCCcceEcccc
Confidence            21  234456778888888754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.62  E-value=2.8e-17  Score=166.45  Aligned_cols=343  Identities=15%  Similarity=0.046  Sum_probs=167.8

Q ss_pred             eeEEEEEEEeeCChhhHHHHHH-HHHhCCeeEEEEEEeecCCcc---cccCCcccCCCCccEEEEcCeeccCCCCC-CCc
Q 036097          110 VEKLRFKASFLDDSELADRCVC-YAIESTVKELELHTILRGDRL---YHLPQMVVCSETVNVLDLFGCILLEFPGR-NSV  184 (481)
Q Consensus       110 l~~l~l~~~~~~~~~~~~~~~~-~~~~~~l~~L~L~~~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~  184 (481)
                      ++.+.+... ....   ..|.. ....++++.|+++.+  ....   ..++..+..+++|++|+|++|.+.+.... ...
T Consensus         5 l~~L~Ls~~-~l~~---~~~~~~~~~~~~L~~L~L~~~--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~   78 (461)
T 1z7x_W            5 IQSLDIQCE-ELSD---ARWAELLPLLQQCQVVRLDDC--GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ   78 (461)
T ss_dssp             EEEEEEESC-CCCH---HHHHHHHHHHTTCSEEEEESS--CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             ceehhhhhc-ccCc---hhHHHHHhhcCCccEEEccCC--CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence            666666533 1111   22333 334578888888876  3222   24556666778888888888876431110 111


Q ss_pred             CCC----cceEEEecceecCh---HHHHHHhcCCCccceeEeeeecCcce-----Ee---ecCCCCCcEEEEccCCCCc-
Q 036097          185 KLP----SLRKLRLAQVRASD---QVIENLVAGCPLIEDLIFEFCEGLKS-----IK---LFGRSKLRDIKIKGGREAE-  248 (481)
Q Consensus       185 ~~~----~L~~L~L~~~~~~~---~~l~~l~~~~p~Le~L~l~~~~~~~~-----l~---i~~~~~L~~L~l~~~~~~~-  248 (481)
                      .++    +|++|+|++|.+.+   ..+...+..+++|++|++++|. +..     +.   ....++|++|++++|..-. 
T Consensus        79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  157 (461)
T 1z7x_W           79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA  157 (461)
T ss_dssp             TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHH
Confidence            233    68888888888765   3455667788888888888775 221     10   1112567777777775111 


Q ss_pred             ------eEEEecCCccEEEEcCCCCC--Cceec-----cCCCCCcEEEEE---echhh---hHHhhhcCCcccEEEeccc
Q 036097          249 ------EVNINALNGHSITVVSPLPS--GKINE-----VSCKNLKSLFLC---ITSVV---DETLSYHITRLVVLECLGL  309 (481)
Q Consensus       249 ------~~~~~~p~L~~L~l~~~~~~--~~~~~-----~~~~~L~~L~l~---~~~~~---~~~~~~~~~~L~~L~L~~~  309 (481)
                            .....+++|++|+++++.-.  ....+     ...++|+.|+++   +++..   +...+..+++|++|++++|
T Consensus       158 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  237 (461)
T 1z7x_W          158 SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN  237 (461)
T ss_dssp             GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence                  11123467777777766211  01111     124567777665   33332   3444556677777777763


Q ss_pred             cccc-ccc----cccccCCcccEEEecCCCCccc-----c---cccCCCcceeEecccccCCcchhh----hhccCCCcc
Q 036097          310 IVCF-ELQ----NIKISSPSLKRLEIFKCTKLAA-----V---EIETPNLSKCKYNGGVVPFSSSTA----LKLLETDLN  372 (481)
Q Consensus       310 ~~c~-~l~----~l~~~~~~L~~L~l~~c~~l~~-----~---~~~~p~L~~L~~~~~~~~~~~~~~----l~~~~~~L~  372 (481)
                      .+.. ++.    .+...+++|++|++++|. +..     +   ...+++|++|.++++.+.......    +....++|+
T Consensus       238 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~  316 (461)
T 1z7x_W          238 KLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE  316 (461)
T ss_dssp             BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred             cCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccce
Confidence            2111 111    111124566667766653 222     1   123566666666665544322211    112234666


Q ss_pred             EEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeee-chhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhh
Q 036097          373 LYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIV-PKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLL  451 (481)
Q Consensus       373 ~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll  451 (481)
                      .+++..+.-.......+...+..++.|+.|+++.+..... +..+........++|++|+++.+.-....  ...++..+
T Consensus       317 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~--~~~l~~~l  394 (461)
T 1z7x_W          317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS--CSSLAATL  394 (461)
T ss_dssp             EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH--HHHHHHHH
T ss_pred             eeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh--HHHHHHHH
Confidence            6666544311111122222232233333366664432211 11111110111345666666555422111  22334445


Q ss_pred             hcCcccceEEE
Q 036097          452 WMSPHVDTVTI  462 (481)
Q Consensus       452 ~~~p~L~~L~l  462 (481)
                      ..+|+|+.|++
T Consensus       395 ~~~~~L~~L~l  405 (461)
T 1z7x_W          395 LANHSLRELDL  405 (461)
T ss_dssp             HHCCCCCEEEC
T ss_pred             HhCCCccEEEC
Confidence            55666666666

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.61  E-value=7.6e-17  Score=169.73  Aligned_cols=287  Identities=11%  Similarity=-0.008  Sum_probs=197.8

Q ss_pred             ccCCcccCCCCccEEEEcCeeccC------------------CCCCCCc--CCCcceEEEecceecChHHHHHHhcCCCc
Q 036097          154 HLPQMVVCSETVNVLDLFGCILLE------------------FPGRNSV--KLPSLRKLRLAQVRASDQVIENLVAGCPL  213 (481)
Q Consensus       154 ~l~~~~~~~~~L~~L~L~~~~~~~------------------~~~~~~~--~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  213 (481)
                      .+|..+.++++|++|+|++|.+..                  +| ....  .+++|++|+|++|.+... +...+..+++
T Consensus       197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~  274 (636)
T 4eco_A          197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPE  274 (636)
T ss_dssp             EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSS
T ss_pred             cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc-hhhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCC
Confidence            488888899999999999999877                  44 3555  899999999999976542 2234678999


Q ss_pred             cceeEeeeecCcce--E--eecC------CCCCcEEEEccCCC--Cce--EEEecCCccEEEEcCCC--CCCceeccCCC
Q 036097          214 IEDLIFEFCEGLKS--I--KLFG------RSKLRDIKIKGGRE--AEE--VNINALNGHSITVVSPL--PSGKINEVSCK  277 (481)
Q Consensus       214 Le~L~l~~~~~~~~--l--~i~~------~~~L~~L~l~~~~~--~~~--~~~~~p~L~~L~l~~~~--~~~~~~~~~~~  277 (481)
                      |++|++++|..+..  +  .+..      +++|+.|++++|..  +..  ....+++|+.|+++++.  +..+ .+..++
T Consensus       275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~  353 (636)
T 4eco_A          275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI  353 (636)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred             CCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence            99999999863332  1  2222      48999999999872  222  22367899999999982  2455 788899


Q ss_pred             CCcEEEEE---echhhhHHhhhcCCc-ccEEEeccccccccccccccc--CCcccEEEecCCCCcccccc----------
Q 036097          278 NLKSLFLC---ITSVVDETLSYHITR-LVVLECLGLIVCFELQNIKIS--SPSLKRLEIFKCTKLAAVEI----------  341 (481)
Q Consensus       278 ~L~~L~l~---~~~~~~~~~~~~~~~-L~~L~L~~~~~c~~l~~l~~~--~~~L~~L~l~~c~~l~~~~~----------  341 (481)
                      +|+.|+++   ++  .++..+..+++ |+.|++++|.+. .+......  .++|+.|++++|.--..++.          
T Consensus       354 ~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~  430 (636)
T 4eco_A          354 KLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF  430 (636)
T ss_dssp             EESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCC
T ss_pred             CCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccc
Confidence            99999987   44  45555788888 999999995543 23222111  34899999999763222211          


Q ss_pred             cCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHh-h-------cccceeeEEEEEEeeceeeec
Q 036097          342 ETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIA-K-------FHQWSKVLNLLSECGESVIVP  413 (481)
Q Consensus       342 ~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~-~-------l~~L~~l~~L~i~~~~~~~~~  413 (481)
                      ..++|+.|.++++.+..... .+...+++|+.+++..+.-.     .++. .       +.++.+|+.|+++.+....+|
T Consensus       431 ~~~~L~~L~Ls~N~l~~lp~-~~~~~l~~L~~L~Ls~N~l~-----~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp  504 (636)
T 4eco_A          431 KGINVSSINLSNNQISKFPK-ELFSTGSPLSSINLMGNMLT-----EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS  504 (636)
T ss_dssp             CCCCEEEEECCSSCCCSCCT-HHHHTTCCCSEEECCSSCCS-----BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCC
T ss_pred             cCCCCCEEECcCCccCcCCH-HHHccCCCCCEEECCCCCCC-----CcCHHHhccccccccccCCccEEECcCCcCCccC
Confidence            45689999999987764332 22236899999999665411     1211 1       222235666999988777777


Q ss_pred             hhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097          414 KELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       414 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                      +.+.   ...+++|++|+++.+.-..       ++.-+..+++|+.|.+
T Consensus       505 ~~~~---~~~l~~L~~L~Ls~N~l~~-------ip~~~~~l~~L~~L~L  543 (636)
T 4eco_A          505 DDFR---ATTLPYLVGIDLSYNSFSK-------FPTQPLNSSTLKGFGI  543 (636)
T ss_dssp             GGGS---TTTCTTCCEEECCSSCCSS-------CCCGGGGCSSCCEEEC
T ss_pred             hhhh---hccCCCcCEEECCCCCCCC-------cChhhhcCCCCCEEEC
Confidence            5521   0267899999998875321       3444556777777777

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.61  E-value=1.2e-15  Score=160.04  Aligned_cols=284  Identities=15%  Similarity=0.108  Sum_probs=161.9

Q ss_pred             CeeEEEEEEeecCCcccccCCc-ccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          137 TVKELELHTILRGDRLYHLPQM-VVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       137 ~l~~L~L~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      +++.|++..+    ....++.. +..+++|++|++++|.+..+|. ....+++|++|+++++.+.+.. ...+..+++|+
T Consensus       255 ~L~~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~  328 (606)
T 3t6q_A          255 SVESINLQKH----YFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFENLC-QISASNFPSLT  328 (606)
T ss_dssp             EEEEEECTTC----CCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCS
T ss_pred             ceeEEEeecC----ccCccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccCCcCcCc-hhhhhccCcCC
Confidence            4555555443    22334433 4557788888888887765553 4556778888888887765421 12356678888


Q ss_pred             eeEeeeecCcceE---eecCCCCCcEEEEccCCCCceE-----EEecCCccEEEEcCCC--CCCceeccCCCCCcEEEEE
Q 036097          216 DLIFEFCEGLKSI---KLFGRSKLRDIKIKGGREAEEV-----NINALNGHSITVVSPL--PSGKINEVSCKNLKSLFLC  285 (481)
Q Consensus       216 ~L~l~~~~~~~~l---~i~~~~~L~~L~l~~~~~~~~~-----~~~~p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~  285 (481)
                      +|++++|.....+   .+..+++|+.|+++++......     ...+++|+.|+++++.  +..+..+..+++|+.|+++
T Consensus       329 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  408 (606)
T 3t6q_A          329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA  408 (606)
T ss_dssp             EEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECT
T ss_pred             EEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECC
Confidence            8888777432222   2445677888888777522111     1246777788777762  2233456677777777776


Q ss_pred             ---echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcc------cccccCCCcceeEeccccc
Q 036097          286 ---ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLA------AVEIETPNLSKCKYNGGVV  356 (481)
Q Consensus       286 ---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~------~~~~~~p~L~~L~~~~~~~  356 (481)
                         +........+..+++|+.|++++|.+..........+++|+.|++++|.--.      ......++|+.|.++++.+
T Consensus       409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l  488 (606)
T 3t6q_A          409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL  488 (606)
T ss_dssp             TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred             CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence               3333333445677778888877733222222222335777778877765221      1233457777777777655


Q ss_pred             CCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecc
Q 036097          357 PFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISI  436 (481)
Q Consensus       357 ~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  436 (481)
                      .......+. .+++|+.+++..+.-.    ...+..+.+++.| .|+++.+....+++..    +..+++|+.|+++.+.
T Consensus       489 ~~~~~~~~~-~l~~L~~L~Ls~N~l~----~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~----~~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          489 SSIDQHAFT-SLKMMNHVDLSHNRLT----SSSIEALSHLKGI-YLNLASNHISIILPSL----LPILSQQRTINLRQNP  558 (606)
T ss_dssp             CEECTTTTT-TCTTCCEEECCSSCCC----GGGGGGGTTCCSC-EEECCSSCCCCCCGGG----HHHHHTSSEEECTTCC
T ss_pred             CccChhhhc-cccCCCEEECCCCccC----cCChhHhCccccc-EEECcCCcccccCHhh----cccCCCCCEEeCCCCC
Confidence            433322222 6677777777655411    1123455566665 5777666544443221    2235667777776653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.60  E-value=1.2e-15  Score=157.01  Aligned_cols=149  Identities=9%  Similarity=0.029  Sum_probs=78.4

Q ss_pred             hcCCcccEEEecccccccccccccccCCcccEEEecCCCCcc--c---ccccCCCcceeEecccccCCcchhhhhccCCC
Q 036097          296 YHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLA--A---VEIETPNLSKCKYNGGVVPFSSSTALKLLETD  370 (481)
Q Consensus       296 ~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~--~---~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~  370 (481)
                      ..+++|+.|++++|.+..........+++|+.|++++|.--.  .   .....++|++|.++++.+...........+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            456677777777643322222222345677777777654211  1   12345777777777766554221111124567


Q ss_pred             ccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhh-
Q 036097          371 LNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDG-  449 (481)
Q Consensus       371 L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~-  449 (481)
                      |+.+++..+.-.    ...+..++  .+|+.|+++.+....+|+.     +..+++|++|+++.+.-..       ++. 
T Consensus       401 L~~L~Ls~N~l~----~~~~~~l~--~~L~~L~Ls~N~l~~ip~~-----~~~l~~L~~L~L~~N~l~~-------l~~~  462 (520)
T 2z7x_B          401 LLSLNMSSNILT----DTIFRCLP--PRIKVLDLHSNKIKSIPKQ-----VVKLEALQELNVASNQLKS-------VPDG  462 (520)
T ss_dssp             CCEEECCSSCCC----GGGGGSCC--TTCCEEECCSSCCCCCCGG-----GGGCTTCCEEECCSSCCCC-------CCTT
T ss_pred             CCEEECcCCCCC----cchhhhhc--ccCCEEECCCCcccccchh-----hhcCCCCCEEECCCCcCCc-------cCHH
Confidence            777777555310    11222332  2334477776665566654     2246677777777664211       122 


Q ss_pred             hhhcCcccceEEE
Q 036097          450 LLWMSPHVDTVTI  462 (481)
Q Consensus       450 ll~~~p~L~~L~l  462 (481)
                      .+..+++|+.|.+
T Consensus       463 ~~~~l~~L~~L~l  475 (520)
T 2z7x_B          463 IFDRLTSLQKIWL  475 (520)
T ss_dssp             TTTTCTTCCEEEC
T ss_pred             HhccCCcccEEEC
Confidence            3566777877777

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.60  E-value=1.2e-15  Score=157.87  Aligned_cols=170  Identities=14%  Similarity=0.041  Sum_probs=109.0

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      +++++|+++.+  .. ....|..+..+++|++|++++|.+...++.....+++|++|+++++.+.+.. ...+..+++|+
T Consensus        26 ~~L~~L~Ls~n--~l-~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~  101 (549)
T 2z81_A           26 AAMKSLDLSFN--KI-TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLK  101 (549)
T ss_dssp             TTCCEEECCSS--CC-CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCC
T ss_pred             CCccEEECcCC--cc-CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC-HHHhccCCCCc
Confidence            57888888776  21 1223455677888999999888887766556677888899988888776422 22357788888


Q ss_pred             eeEeeeecCcc--e-EeecCCCCCcEEEEccCCCCceEE----EecCCccEEEEcCCC--CCCceeccCCCCCcEEEEE-
Q 036097          216 DLIFEFCEGLK--S-IKLFGRSKLRDIKIKGGREAEEVN----INALNGHSITVVSPL--PSGKINEVSCKNLKSLFLC-  285 (481)
Q Consensus       216 ~L~l~~~~~~~--~-l~i~~~~~L~~L~l~~~~~~~~~~----~~~p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~-  285 (481)
                      +|++++|.--.  . -.+..+++|+.|+++++.....+.    ..+++|+.|+++++.  +..+..+..+++|++|++. 
T Consensus       102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~  181 (549)
T 2z81_A          102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL  181 (549)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEeccc
Confidence            88888874211  1 134557888888888876333332    246778888888762  2244556667777777766 


Q ss_pred             echhhhH-HhhhcCCcccEEEeccc
Q 036097          286 ITSVVDE-TLSYHITRLVVLECLGL  309 (481)
Q Consensus       286 ~~~~~~~-~~~~~~~~L~~L~L~~~  309 (481)
                      -....+. .....+++|+.|++++|
T Consensus       182 n~~~~~~~~~~~~l~~L~~L~L~~n  206 (549)
T 2z81_A          182 SESAFLLEIFADILSSVRYLELRDT  206 (549)
T ss_dssp             SBSTTHHHHHHHSTTTBSEEEEESC
T ss_pred             CcccccchhhHhhcccccEEEccCC
Confidence            1111122 22345666777766664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.60  E-value=3e-15  Score=159.14  Aligned_cols=288  Identities=10%  Similarity=-0.022  Sum_probs=132.7

Q ss_pred             ccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChH----HHH----HHhcCCCccceeEeeeecCcc--eE
Q 036097          159 VVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQ----VIE----NLVAGCPLIEDLIFEFCEGLK--SI  228 (481)
Q Consensus       159 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~----~l~----~l~~~~p~Le~L~l~~~~~~~--~l  228 (481)
                      +..+++|++|++++|.+...++.....+++|++|++.++.....    .+.    ..+..+++|++|++++|.-..  ..
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~  347 (680)
T 1ziw_A          268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN  347 (680)
T ss_dssp             TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT
T ss_pred             ccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh
Confidence            33455555555555554443333344455555555544322110    000    013445666666665553111  11


Q ss_pred             eecCCCCCcEEEEccCC-CCceEE------EecCCccEEEEcCCC--CCCceeccCCCCCcEEEEE---echhhhHHhhh
Q 036097          229 KLFGRSKLRDIKIKGGR-EAEEVN------INALNGHSITVVSPL--PSGKINEVSCKNLKSLFLC---ITSVVDETLSY  296 (481)
Q Consensus       229 ~i~~~~~L~~L~l~~~~-~~~~~~------~~~p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~  296 (481)
                      .+..+++|+.|++++|. ....+.      ...++|+.|+++++.  +..+..+..+++|+.|+++   +++......+.
T Consensus       348 ~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  427 (680)
T 1ziw_A          348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR  427 (680)
T ss_dssp             TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT
T ss_pred             HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc
Confidence            12345666666666553 111111      012455666665551  1123345566666666665   22222223445


Q ss_pred             cCCcccEEEeccccc---------------------cc-----ccccccccCCcccEEEecCCCCcccc----cccCCCc
Q 036097          297 HITRLVVLECLGLIV---------------------CF-----ELQNIKISSPSLKRLEIFKCTKLAAV----EIETPNL  346 (481)
Q Consensus       297 ~~~~L~~L~L~~~~~---------------------c~-----~l~~l~~~~~~L~~L~l~~c~~l~~~----~~~~p~L  346 (481)
                      ++++|+.|++++|..                     +.     ........+++|+.|++++|. +..+    ....++|
T Consensus       428 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L  506 (680)
T 1ziw_A          428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKL  506 (680)
T ss_dssp             TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred             CcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CCcCChhhhcccccc
Confidence            556666666665321                     10     000111123556666666543 2222    2234666


Q ss_pred             ceeEecccccCCcchhh-------hhccCCCccEEEEeeChhhHHHHHHHH-hhcccceeeEEEEEEeeceeeechhhhc
Q 036097          347 SKCKYNGGVVPFSSSTA-------LKLLETDLNLYTINFDPQWYVKFIELI-AKFHQWSKVLNLLSECGESVIVPKELRQ  418 (481)
Q Consensus       347 ~~L~~~~~~~~~~~~~~-------l~~~~~~L~~l~l~~~~~~~~~~~~~~-~~l~~L~~l~~L~i~~~~~~~~~~~~~~  418 (481)
                      +.|.++++.+......+       ....+++|+.+++..+.     +..++ ..+.++..|+.|+++++....+|+.   
T Consensus       507 ~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-----l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~---  578 (680)
T 1ziw_A          507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-----FDEIPVEVFKDLFELKIIDLGLNNLNTLPAS---  578 (680)
T ss_dssp             CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT---
T ss_pred             CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-----CCCCCHHHcccccCcceeECCCCCCCcCCHh---
Confidence            66666665443211000       01255666666665443     11121 2244455555577776655555533   


Q ss_pred             cCCCCCCCCceEEEEecccchhhhHHHHHhhhhh-cCcccceEEE
Q 036097          419 ILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLW-MSPHVDTVTI  462 (481)
Q Consensus       419 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~-~~p~L~~L~l  462 (481)
                       .+..+.+|+.|+++.+.-..      ..+..+. .+++|+.|.+
T Consensus       579 -~~~~l~~L~~L~L~~N~l~~------~~~~~~~~~~~~L~~l~l  616 (680)
T 1ziw_A          579 -VFNNQVSLKSLNLQKNLITS------VEKKVFGPAFRNLTELDM  616 (680)
T ss_dssp             -TTTTCTTCCEEECTTSCCCB------CCHHHHHHHHTTCSEEEC
T ss_pred             -HhCCCCCCCEEECCCCcCCc------cChhHhcccccccCEEEc
Confidence             23446778888887764222      1123333 5788999998

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.59  E-value=1.2e-15  Score=158.12  Aligned_cols=56  Identities=11%  Similarity=0.090  Sum_probs=36.3

Q ss_pred             cceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097          395 QWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       395 ~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                      .+..|++|+++++....+|+.      ..+++|+.|+++.+.-.+      ..+..+..+++|+.|.+
T Consensus       449 ~l~~L~~L~Ls~N~l~~ip~~------~~l~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~l  504 (549)
T 2z81_A          449 FLPRLQELYISRNKLKTLPDA------SLFPVLLVMKISRNQLKS------VPDGIFDRLTSLQKIWL  504 (549)
T ss_dssp             CCTTCCEEECCSSCCSSCCCG------GGCTTCCEEECCSSCCCC------CCTTGGGGCTTCCEEEC
T ss_pred             cCChhcEEECCCCccCcCCCc------ccCccCCEEecCCCccCC------cCHHHHhcCcccCEEEe
Confidence            344445588887766666632      235788888888765322      23455677888998888

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.59  E-value=7.1e-16  Score=165.96  Aligned_cols=287  Identities=9%  Similarity=0.003  Sum_probs=200.2

Q ss_pred             cCCcccCCCCccEEEEcCeeccC------------------CCCCCCc--CCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          155 LPQMVVCSETVNVLDLFGCILLE------------------FPGRNSV--KLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       155 l~~~~~~~~~L~~L~L~~~~~~~------------------~~~~~~~--~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      +|..+.++++|++|+|++|.+..                  +|. ...  .+++|++|+|++|.+... ++..+..+++|
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L  517 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPEL  517 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSC
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCC
Confidence            88888999999999999999877                  443 444  899999999999976542 22447789999


Q ss_pred             ceeEeeeecCcce--E---------eecCCCCCcEEEEccCCCC--ce--EEEecCCccEEEEcCC-CCCCceeccCCCC
Q 036097          215 EDLIFEFCEGLKS--I---------KLFGRSKLRDIKIKGGREA--EE--VNINALNGHSITVVSP-LPSGKINEVSCKN  278 (481)
Q Consensus       215 e~L~l~~~~~~~~--l---------~i~~~~~L~~L~l~~~~~~--~~--~~~~~p~L~~L~l~~~-~~~~~~~~~~~~~  278 (481)
                      ++|++++|..+..  +         ....+++|+.|++++|..-  ..  ....+++|+.|+++++ ....+ .+..+++
T Consensus       518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~  596 (876)
T 4ecn_A          518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVK  596 (876)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSE
T ss_pred             CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCc
Confidence            9999999863321  1         1224579999999998722  22  2236789999999998 33444 8899999


Q ss_pred             CcEEEEE---echhhhHHhhhcCCc-ccEEEeccccccccccccccc--CCcccEEEecCCCCccc---cc-----ccCC
Q 036097          279 LKSLFLC---ITSVVDETLSYHITR-LVVLECLGLIVCFELQNIKIS--SPSLKRLEIFKCTKLAA---VE-----IETP  344 (481)
Q Consensus       279 L~~L~l~---~~~~~~~~~~~~~~~-L~~L~L~~~~~c~~l~~l~~~--~~~L~~L~l~~c~~l~~---~~-----~~~p  344 (481)
                      |+.|+++   ++  .++..+..+++ |+.|++++|.+. .+......  .++|+.|++++|.--..   +.     ...+
T Consensus       597 L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~  673 (876)
T 4ecn_A          597 LTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI  673 (876)
T ss_dssp             ESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred             ceEEECcCCccc--cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence            9999987   44  45556778888 999999995433 22222112  24599999999753221   11     2346


Q ss_pred             CcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhh--------cccceeeEEEEEEeeceeeechhh
Q 036097          345 NLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAK--------FHQWSKVLNLLSECGESVIVPKEL  416 (481)
Q Consensus       345 ~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~--------l~~L~~l~~L~i~~~~~~~~~~~~  416 (481)
                      +|+.|.++++.+.... ..+...+++|+.+++..+.-     ..++..        +.++.+|+.|+++.+....+|+.+
T Consensus       674 ~L~~L~Ls~N~L~~lp-~~~~~~l~~L~~L~Ls~N~L-----~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l  747 (876)
T 4ecn_A          674 NASTVTLSYNEIQKFP-TELFATGSPISTIILSNNLM-----TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF  747 (876)
T ss_dssp             CEEEEECCSSCCCSCC-HHHHHTTCCCSEEECCSCCC-----SCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGG
T ss_pred             CcCEEEccCCcCCccC-HHHHccCCCCCEEECCCCcC-----CccChHHhccccccccccCCccEEECCCCCCccchHHh
Confidence            8999999998777433 23334789999999966541     112211        223336666999988777777552


Q ss_pred             hccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEEe
Q 036097          417 RQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTIE  463 (481)
Q Consensus       417 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l~  463 (481)
                      .   ...+++|+.|+|+.+.-..       ++.-+.++++|+.|.+.
T Consensus       748 ~---~~~l~~L~~L~Ls~N~L~~-------lp~~l~~L~~L~~L~Ls  784 (876)
T 4ecn_A          748 R---ATTLPYLSNMDVSYNCFSS-------FPTQPLNSSQLKAFGIR  784 (876)
T ss_dssp             S---TTTCTTCCEEECCSSCCSS-------CCCGGGGCTTCCEEECC
T ss_pred             h---hccCCCcCEEEeCCCCCCc-------cchhhhcCCCCCEEECC
Confidence            1   1267899999998875321       35556789999999993

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.59  E-value=1.3e-15  Score=158.47  Aligned_cols=153  Identities=14%  Similarity=0.022  Sum_probs=85.5

Q ss_pred             hhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchhhhhccCC
Q 036097          294 LSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTALKLLET  369 (481)
Q Consensus       294 ~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~  369 (481)
                      .+..+++|+.|+++++.... +......+++|+.|++++|.-...    ....+++|++|.++++.+.......+. .++
T Consensus       368 ~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~  445 (570)
T 2z63_A          368 SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLS  445 (570)
T ss_dssp             HHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTT-TCT
T ss_pred             cccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhh-cCC
Confidence            34556666666666622111 111122356777777776542111    223457777777777654433222222 677


Q ss_pred             CccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeee-chhhhccCCCCCCCCceEEEEecccchhhhHHHHHh
Q 036097          370 DLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIV-PKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVD  448 (481)
Q Consensus       370 ~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~  448 (481)
                      +|+.+++..+....   ..++..+..+.+|+.|+++.+..... |+.     +..+++|++|+++.+.-..      ..+
T Consensus       446 ~L~~L~l~~n~l~~---~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~------~~~  511 (570)
T 2z63_A          446 SLEVLKMAGNSFQE---NFLPDIFTELRNLTFLDLSQCQLEQLSPTA-----FNSLSSLQVLNMASNQLKS------VPD  511 (570)
T ss_dssp             TCCEEECTTCEEGG---GEECSCCTTCTTCCEEECTTSCCCEECTTT-----TTTCTTCCEEECCSSCCSC------CCT
T ss_pred             cCcEEECcCCcCcc---ccchhhhhcccCCCEEECCCCccccCChhh-----hhcccCCCEEeCCCCcCCC------CCH
Confidence            88888776554110   11234455555666688886655444 323     5567888999888764222      224


Q ss_pred             hhhhcCcccceEEE
Q 036097          449 GLLWMSPHVDTVTI  462 (481)
Q Consensus       449 ~ll~~~p~L~~L~l  462 (481)
                      ..+..+|+|+.|.+
T Consensus       512 ~~~~~l~~L~~L~l  525 (570)
T 2z63_A          512 GIFDRLTSLQKIWL  525 (570)
T ss_dssp             TTTTTCTTCCEEEC
T ss_pred             HHhhcccCCcEEEe
Confidence            55677899999988

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.58  E-value=7.2e-16  Score=161.65  Aligned_cols=262  Identities=12%  Similarity=0.096  Sum_probs=184.9

Q ss_pred             ccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcE
Q 036097          159 VVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRD  238 (481)
Q Consensus       159 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~  238 (481)
                      +..+++|+.|+++++.+...+  ....+++|++|++++|.+..  +.. + .+++|++|++++|.......+..+++|+.
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~l~~--lp~-~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~  354 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQLKQ--FPT-L-DLPFLKSLTLTMNKGSISFKKVALPSLSY  354 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCCCSS--CCC-C-CCSSCCEEEEESCSSCEECCCCCCTTCCE
T ss_pred             cccCCCCCEEEecCccchhhh--hccccccCCEEEcccccCcc--ccc-C-CCCccceeeccCCcCccchhhccCCCCCE
Confidence            566899999999999986665  56678999999999998833  222 2 89999999999997666666777899999


Q ss_pred             EEEccCCCC-----ceEEEecCCccEEEEcCCC-CCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccc
Q 036097          239 IKIKGGREA-----EEVNINALNGHSITVVSPL-PSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGL  309 (481)
Q Consensus       239 L~l~~~~~~-----~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~  309 (481)
                      |+++++...     ......+++|+.|+++++. ...+..+..+++|+.|+++   +........+..+++|+.|++++|
T Consensus       355 L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  434 (606)
T 3vq2_A          355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT  434 (606)
T ss_dssp             EECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred             EECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence            999988611     1112357899999999882 2234678889999999987   443333356678999999999994


Q ss_pred             ccccccccccccCCcccEEEecCCCCcc----cccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHH
Q 036097          310 IVCFELQNIKISSPSLKRLEIFKCTKLA----AVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVK  385 (481)
Q Consensus       310 ~~c~~l~~l~~~~~~L~~L~l~~c~~l~----~~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~  385 (481)
                      ............+++|+.|++++|.--.    ......++|+.|.++++.+.......+. .+++|+.+++..+.-.   
T Consensus       435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~---  510 (606)
T 3vq2_A          435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD-TLHRLQLLNMSHNNLL---  510 (606)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCS---
T ss_pred             CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhc-ccccCCEEECCCCcCC---
Confidence            3322222233456899999999875322    2334568999999999876544333333 7889999998766411   


Q ss_pred             HHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCC-CCceEEEEecc
Q 036097          386 FIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLS-GVKHLNFSISI  436 (481)
Q Consensus       386 ~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~  436 (481)
                       ...+..+.++.+|+.|+++++....+|+.     +..+. +|++|+++.+.
T Consensus       511 -~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-----~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          511 -FLDSSHYNQLYSLSTLDCSFNRIETSKGI-----LQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             -CEEGGGTTTCTTCCEEECTTSCCCCEESC-----GGGSCTTCCEEECCSCC
T ss_pred             -CcCHHHccCCCcCCEEECCCCcCcccCHh-----HhhhcccCcEEEccCCC
Confidence             01134555666666699988877677754     33343 69999998764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.58  E-value=3.5e-16  Score=163.62  Aligned_cols=275  Identities=12%  Similarity=0.044  Sum_probs=166.2

Q ss_pred             hCCeeEEEEEEeecCCcccccCC-cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097          135 ESTVKELELHTILRGDRLYHLPQ-MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL  213 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  213 (481)
                      .++++.|++..+    ....++. .+..+++|++|+|++|.+...++.....+++|++|+|++|.+.. ....++..+++
T Consensus        74 l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~  148 (597)
T 3oja_B           74 FRQVELLNLNDL----QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFHNTPK  148 (597)
T ss_dssp             CCCCSEEECTTS----CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred             CCCCcEEECCCC----CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCHHHhccCCC
Confidence            367777777665    2233333 55567788888888887766665555677888888888776653 12223466778


Q ss_pred             cceeEeeeecCcce--EeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEEechhhh
Q 036097          214 IEDLIFEFCEGLKS--IKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVD  291 (481)
Q Consensus       214 Le~L~l~~~~~~~~--l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  291 (481)
                      |++|++++|.-...  -.+..+++|+.|+++++..-......+++|+.|+++++.-   ..+...++|+.|+++  ...+
T Consensus       149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l---~~l~~~~~L~~L~ls--~n~l  223 (597)
T 3oja_B          149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL---STLAIPIAVEELDAS--HNSI  223 (597)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCC---SEEECCTTCSEEECC--SSCC
T ss_pred             CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcc---ccccCCchhheeecc--CCcc
Confidence            88888877742111  1244567788888877752111122457777777777621   123445677777765  1111


Q ss_pred             HHh-hhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchhhhhc
Q 036097          292 ETL-SYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTALKL  366 (481)
Q Consensus       292 ~~~-~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l~~  366 (481)
                      ..+ ....++|+.|++++|.+...  .....+++|+.|++++|. +..    .....++|+.|.++++.+.....  ...
T Consensus       224 ~~~~~~~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~  298 (597)
T 3oja_B          224 NVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNL--YGQ  298 (597)
T ss_dssp             CEEECSCCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCCCEEEC--SSS
T ss_pred             cccccccCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCCCCCCc--ccc
Confidence            111 12236888999888443221  223446889999999865 332    23456889999998876654221  112


Q ss_pred             cCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecc
Q 036097          367 LETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISI  436 (481)
Q Consensus       367 ~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  436 (481)
                      .+++|+.+++..+.-.     .++..+..+.+|..|+++++....++       +..+++|+.|+++.+.
T Consensus       299 ~l~~L~~L~Ls~N~l~-----~i~~~~~~l~~L~~L~L~~N~l~~~~-------~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          299 PIPTLKVLDLSHNHLL-----HVERNQPQFDRLENLYLDHNSIVTLK-------LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CCTTCCEEECCSSCCC-----CCGGGHHHHTTCSEEECCSSCCCCCC-------CCTTCCCSEEECCSSC
T ss_pred             cCCCCcEEECCCCCCC-----ccCcccccCCCCCEEECCCCCCCCcC-------hhhcCCCCEEEeeCCC
Confidence            5789999998766511     12223333344444999877655444       5567889999998875

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.58  E-value=1.7e-14  Score=139.09  Aligned_cols=225  Identities=19%  Similarity=0.220  Sum_probs=142.5

Q ss_pred             HHHHHhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhc
Q 036097          130 VCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVA  209 (481)
Q Consensus       130 ~~~~~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~  209 (481)
                      +......+++.|++..+    ....+|..++.+++|++|+|++|.+..+| .....+++|++|+|++|.+.  .+...+.
T Consensus        75 l~~~~~~~l~~L~L~~n----~l~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~--~lp~~l~  147 (328)
T 4fcg_A           75 LEDATQPGRVALELRSV----PLPQFPDQAFRLSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLARNPLR--ALPASIA  147 (328)
T ss_dssp             HHHHTSTTCCEEEEESS----CCSSCCSCGGGGTTCSEEEEESSCCCCCC-SCGGGGTTCSEEEEESCCCC--CCCGGGG
T ss_pred             HhcccccceeEEEccCC----CchhcChhhhhCCCCCEEECCCCCccchh-HHHhccCCCCEEECCCCccc--cCcHHHh
Confidence            34445578999999887    34488999999999999999999987555 35678999999999999886  3333477


Q ss_pred             CCCccceeEeeeecCcceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCC-CCCCceeccCCCCCcEEEEE---
Q 036097          210 GCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSP-LPSGKINEVSCKNLKSLFLC---  285 (481)
Q Consensus       210 ~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~---  285 (481)
                      .+++|++|++++|.....+.    ..+....+.      .....+++|+.|+++++ ....+..+..+++|++|+++   
T Consensus       148 ~l~~L~~L~L~~n~~~~~~p----~~~~~~~~~------~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~  217 (328)
T 4fcg_A          148 SLNRLRELSIRACPELTELP----EPLASTDAS------GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP  217 (328)
T ss_dssp             GCTTCCEEEEEEETTCCCCC----SCSEEEC-C------CCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC
T ss_pred             cCcCCCEEECCCCCCccccC----hhHhhccch------hhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC
Confidence            89999999999986544321    011111000      00123455555555554 22334456667777777766   


Q ss_pred             echhhhHHhhhcCCcccEEEecccccccccccc---cccCCcccEEEecCCCCccccc---ccCCCcceeEecccccCCc
Q 036097          286 ITSVVDETLSYHITRLVVLECLGLIVCFELQNI---KISSPSLKRLEIFKCTKLAAVE---IETPNLSKCKYNGGVVPFS  359 (481)
Q Consensus       286 ~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l---~~~~~~L~~L~l~~c~~l~~~~---~~~p~L~~L~~~~~~~~~~  359 (481)
                      ++  .+...+..+++|+.|++++   |.....+   ...+++|+.|++++|.....++   ...++|+.|.++++.....
T Consensus       218 l~--~l~~~l~~l~~L~~L~Ls~---n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          218 LS--ALGPAIHHLPKLEELDLRG---CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             CC--CCCGGGGGCTTCCEEECTT---CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred             CC--cCchhhccCCCCCEEECcC---CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence            22  2333456777777777777   4333322   2335677777777776544432   3567777787777655444


Q ss_pred             chhhhhccCCCccEEEEe
Q 036097          360 SSTALKLLETDLNLYTIN  377 (481)
Q Consensus       360 ~~~~l~~~~~~L~~l~l~  377 (481)
                      ....+. ++++++.+.+.
T Consensus       293 iP~~l~-~L~~L~~l~l~  309 (328)
T 4fcg_A          293 LPSLIA-QLPANCIILVP  309 (328)
T ss_dssp             CCGGGG-GSCTTCEEECC
T ss_pred             ccHHHh-hccCceEEeCC
Confidence            333333 67777777664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.57  E-value=1.9e-15  Score=152.88  Aligned_cols=343  Identities=14%  Similarity=0.052  Sum_probs=201.8

Q ss_pred             eeEEEEEEEeeCChhhHHHHHHH-HHhCCeeEEEEEEeecCCcccccCCcccCCC----CccEEEEcCeeccCC----CC
Q 036097          110 VEKLRFKASFLDDSELADRCVCY-AIESTVKELELHTILRGDRLYHLPQMVVCSE----TVNVLDLFGCILLEF----PG  180 (481)
Q Consensus       110 l~~l~l~~~~~~~~~~~~~~~~~-~~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~----~L~~L~L~~~~~~~~----~~  180 (481)
                      ++.+.+.... -........... ...+++++|+++.+  .............++    +|++|+|++|.+.+.    .+
T Consensus        30 L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~  106 (461)
T 1z7x_W           30 CQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN--ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS  106 (461)
T ss_dssp             CSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC--CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             ccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC--cCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence            8888888552 222222222111 12378999999876  332222221112233    799999999987531    12


Q ss_pred             CCCcCCCcceEEEecceecChHHHHHHh----cCCCccceeEeeeecCcc----eE--eecCCCCCcEEEEccCCCC---
Q 036097          181 RNSVKLPSLRKLRLAQVRASDQVIENLV----AGCPLIEDLIFEFCEGLK----SI--KLFGRSKLRDIKIKGGREA---  247 (481)
Q Consensus       181 ~~~~~~~~L~~L~L~~~~~~~~~l~~l~----~~~p~Le~L~l~~~~~~~----~l--~i~~~~~L~~L~l~~~~~~---  247 (481)
                      .....+++|++|+++++.+.+..+..+.    ...++|++|++++|.--.    .+  .+..+++|+.|+++++..-   
T Consensus       107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  186 (461)
T 1z7x_W          107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG  186 (461)
T ss_dssp             HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred             HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence            2345788999999999988765444333    235689999999884211    11  2234689999999988611   


Q ss_pred             -ceEE----EecCCccEEEEcCCCCC------CceeccCCCCCcEEEEE---echhhhHHh----hhcCCcccEEEeccc
Q 036097          248 -EEVN----INALNGHSITVVSPLPS------GKINEVSCKNLKSLFLC---ITSVVDETL----SYHITRLVVLECLGL  309 (481)
Q Consensus       248 -~~~~----~~~p~L~~L~l~~~~~~------~~~~~~~~~~L~~L~l~---~~~~~~~~~----~~~~~~L~~L~L~~~  309 (481)
                       ..+.    ...++|++|+++++.-.      ....+..+++|++|+++   +++..+..+    ...+++|+.|+++++
T Consensus       187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n  266 (461)
T 1z7x_W          187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC  266 (461)
T ss_dssp             HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC
Confidence             1111    12468999999998322      24456788999999988   555444332    336889999999983


Q ss_pred             ccccc----cccccccCCcccEEEecCCCCccc---------ccccCCCcceeEecccccCCcchhhh---hccCCCccE
Q 036097          310 IVCFE----LQNIKISSPSLKRLEIFKCTKLAA---------VEIETPNLSKCKYNGGVVPFSSSTAL---KLLETDLNL  373 (481)
Q Consensus       310 ~~c~~----l~~l~~~~~~L~~L~l~~c~~l~~---------~~~~~p~L~~L~~~~~~~~~~~~~~l---~~~~~~L~~  373 (481)
                      .+...    +......+++|++|+++++. +.+         +....++|++|.++++.+.......+   ...+++|+.
T Consensus       267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  345 (461)
T 1z7x_W          267 GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE  345 (461)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred             CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence            22110    11112236889999999875 332         22233689999999887765422211   125789999


Q ss_pred             EEEeeChhhHHHHHHHHhhccc-ceeeEEEEEEeecee-----eechhhhccCCCCCCCCceEEEEecccchhhhHHHHH
Q 036097          374 YTINFDPQWYVKFIELIAKFHQ-WSKVLNLLSECGESV-----IVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVV  447 (481)
Q Consensus       374 l~l~~~~~~~~~~~~~~~~l~~-L~~l~~L~i~~~~~~-----~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l  447 (481)
                      +++..+.-.......+...+.. ...|+.|+++++...     .+++.     +..+++|++|+++.+.-.. .++..+.
T Consensus       346 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~-----l~~~~~L~~L~l~~N~i~~-~~~~~l~  419 (461)
T 1z7x_W          346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT-----LLANHSLRELDLSNNCLGD-AGILQLV  419 (461)
T ss_dssp             EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-----HHHCCCCCEEECCSSSCCH-HHHHHHH
T ss_pred             EEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH-----HHhCCCccEEECCCCCCCH-HHHHHHH
Confidence            9987764222223333333332 334444888866543     33433     3336789999998875322 2122222


Q ss_pred             hhhhhcCcccceEEE
Q 036097          448 DGLLWMSPHVDTVTI  462 (481)
Q Consensus       448 ~~ll~~~p~L~~L~l  462 (481)
                      ..+-...++|+.|.+
T Consensus       420 ~~l~~~~~~L~~L~~  434 (461)
T 1z7x_W          420 ESVRQPGCLLEQLVL  434 (461)
T ss_dssp             HHHTSTTCCCCEEEC
T ss_pred             HHhccCCcchhheee
Confidence            222233446888877

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.56  E-value=2.3e-15  Score=156.47  Aligned_cols=105  Identities=11%  Similarity=0.087  Sum_probs=65.9

Q ss_pred             hCCeeEEEEEEeecCCcccccC-CcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh-HHHHHHhcCCC
Q 036097          135 ESTVKELELHTILRGDRLYHLP-QMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD-QVIENLVAGCP  212 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p  212 (481)
                      .++++.|+++.+    ....++ ..+..+++|++|+|++|.+...++.....+++|++|+++++.+.. ...  .+..++
T Consensus        51 l~~L~~L~Ls~n----~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--~~~~l~  124 (570)
T 2z63_A           51 FPELQVLDLSRC----EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF--PIGHLK  124 (570)
T ss_dssp             CSSCCEEECTTC----CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC--SCTTCT
T ss_pred             CCCceEEECCCC----cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCc--cccccc
Confidence            356777777665    223343 344567778888888777766655556677788888887776643 111  156778


Q ss_pred             ccceeEeeeecCcc---eEeecCCCCCcEEEEccCC
Q 036097          213 LIEDLIFEFCEGLK---SIKLFGRSKLRDIKIKGGR  245 (481)
Q Consensus       213 ~Le~L~l~~~~~~~---~l~i~~~~~L~~L~l~~~~  245 (481)
                      +|++|++++|.-..   .-.+..+++|+.|+++++.
T Consensus       125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~  160 (570)
T 2z63_A          125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (570)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred             cccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence            88888887774211   1124456778888877764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.55  E-value=2.8e-15  Score=151.48  Aligned_cols=288  Identities=12%  Similarity=0.046  Sum_probs=179.1

Q ss_pred             hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccC--CCCCCCcCCCcceEEEecceecChHHHHHHhcCCC
Q 036097          135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLE--FPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCP  212 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p  212 (481)
                      .+++++|+++.+  . -....|..+..+++|++|+|++|.+..  ........+++|++|+++++.+.+.....++..++
T Consensus        78 l~~L~~L~Ls~n--~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  154 (455)
T 3v47_A           78 LSSLIILKLDYN--Q-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR  154 (455)
T ss_dssp             CTTCCEEECTTC--T-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT
T ss_pred             cccCCEEeCCCC--c-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC
Confidence            378999999876  2 223346677889999999999998864  22223567899999999999886533334477899


Q ss_pred             ccceeEeeeecCcce--EeecC--CCCCcEEEEccCCC--CceE---------EEecCCccEEEEcCCCCC--Cceec--
Q 036097          213 LIEDLIFEFCEGLKS--IKLFG--RSKLRDIKIKGGRE--AEEV---------NINALNGHSITVVSPLPS--GKINE--  273 (481)
Q Consensus       213 ~Le~L~l~~~~~~~~--l~i~~--~~~L~~L~l~~~~~--~~~~---------~~~~p~L~~L~l~~~~~~--~~~~~--  273 (481)
                      +|++|++++|.-...  ..+..  ..+|+.|+++++..  ....         ....++|+.|+++++.-.  .+..+  
T Consensus       155 ~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  234 (455)
T 3v47_A          155 RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD  234 (455)
T ss_dssp             TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred             cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence            999999998852111  11111  26778888877751  1110         113467888888887221  22222  


Q ss_pred             -cCCCCCcEEEEE---echhh-----h----HHhh--hcCCcccEEEecccccccccccccccCCcccEEEecCCCCccc
Q 036097          274 -VSCKNLKSLFLC---ITSVV-----D----ETLS--YHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA  338 (481)
Q Consensus       274 -~~~~~L~~L~l~---~~~~~-----~----~~~~--~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~  338 (481)
                       ...++|+.|++.   .....     +    ...+  ...++|+.|+++++.+..........+++|+.|++++|. +..
T Consensus       235 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~  313 (455)
T 3v47_A          235 AIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INK  313 (455)
T ss_dssp             HTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCE
T ss_pred             cccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccc
Confidence             223667777655   00000     0    0001  134688888888843322222333446788888888865 332


Q ss_pred             ----ccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHH-HhhcccceeeEEEEEEeeceeeec
Q 036097          339 ----VEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIEL-IAKFHQWSKVLNLLSECGESVIVP  413 (481)
Q Consensus       339 ----~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~-~~~l~~L~~l~~L~i~~~~~~~~~  413 (481)
                          .....++|++|.++++.+.......+. .+++|+.+++..+.-     ..+ +..+.++.+|+.|+++++....+|
T Consensus       314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l-----~~~~~~~~~~l~~L~~L~L~~N~l~~~~  387 (455)
T 3v47_A          314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE-NLDKLEVLDLSYNHI-----RALGDQSFLGLPNLKELALDTNQLKSVP  387 (455)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECGGGGT-TCTTCCEEECCSSCC-----CEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             cChhHhcCcccCCEEECCCCccCCcChhHhc-CcccCCEEECCCCcc-----cccChhhccccccccEEECCCCccccCC
Confidence                223568888888888776544333333 788899998866541     111 244555566666999988766666


Q ss_pred             hhhhccCCCCCCCCceEEEEecc
Q 036097          414 KELRQILPPPLSGVKHLNFSISI  436 (481)
Q Consensus       414 ~~~~~~~~~~l~~L~~L~l~~~~  436 (481)
                      +.    .+..+++|++|+++.+.
T Consensus       388 ~~----~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          388 DG----IFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             TT----TTTTCTTCCEEECCSSC
T ss_pred             Hh----HhccCCcccEEEccCCC
Confidence            43    24567899999998875

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.55  E-value=1.2e-14  Score=150.86  Aligned_cols=148  Identities=9%  Similarity=0.001  Sum_probs=84.0

Q ss_pred             hcCCcccEEEecccccccccccccccCCcccEEEecCCCCccc------ccccCCCcceeEecccccCCcchhhhhccCC
Q 036097          296 YHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA------VEIETPNLSKCKYNGGVVPFSSSTALKLLET  369 (481)
Q Consensus       296 ~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~------~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~  369 (481)
                      ..+++|+.|++++|.+..........+++|+.|+++++. +..      .....++|+.|.++++.+...........++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            456777777777743322222222345778888887754 332      1235577888888776655411111112567


Q ss_pred             CccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhh
Q 036097          370 DLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDG  449 (481)
Q Consensus       370 ~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~  449 (481)
                      +|+.+++..+.-.    ...+..++  .+|+.|+++.+....+|+.     +..+++|+.|+++.+.-..       ++.
T Consensus       429 ~L~~L~l~~n~l~----~~~~~~l~--~~L~~L~L~~N~l~~ip~~-----~~~l~~L~~L~L~~N~l~~-------l~~  490 (562)
T 3a79_B          429 SILVLNLSSNMLT----GSVFRCLP--PKVKVLDLHNNRIMSIPKD-----VTHLQALQELNVASNQLKS-------VPD  490 (562)
T ss_dssp             TCCEEECCSSCCC----GGGGSSCC--TTCSEEECCSSCCCCCCTT-----TTSSCCCSEEECCSSCCCC-------CCT
T ss_pred             cCCEEECCCCCCC----cchhhhhc--CcCCEEECCCCcCcccChh-----hcCCCCCCEEECCCCCCCC-------CCH
Confidence            7777777655411    12233332  2344488887766666654     3356788888887765221       122


Q ss_pred             -hhhcCcccceEEE
Q 036097          450 -LLWMSPHVDTVTI  462 (481)
Q Consensus       450 -ll~~~p~L~~L~l  462 (481)
                       .+..+|+|+.|.+
T Consensus       491 ~~~~~l~~L~~L~l  504 (562)
T 3a79_B          491 GVFDRLTSLQYIWL  504 (562)
T ss_dssp             TSTTTCTTCCCEEC
T ss_pred             HHHhcCCCCCEEEe
Confidence             3667888888887

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.55  E-value=1.5e-14  Score=148.62  Aligned_cols=284  Identities=10%  Similarity=-0.033  Sum_probs=157.5

Q ss_pred             CCeeEEEEEEeecCCcccccC-CcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHLP-QMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      +++++|+++.+    ....++ ..+..+++|++|+|++|.+...++.....+++|++|+|+++.+..  +...  .+++|
T Consensus        21 ~~L~~L~Ls~n----~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~--~l~~L   92 (520)
T 2z7x_B           21 QKTTILNISQN----YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK--ISCH--PTVNL   92 (520)
T ss_dssp             TTCSEEECCSS----CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE--EECC--CCCCC
T ss_pred             ccccEEECCCC----cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee--cCcc--ccCCc
Confidence            67888888776    223343 345668888888888888766644456678888888888887753  1111  67888


Q ss_pred             ceeEeeeecCcc-e--EeecCCCCCcEEEEccCCCCceEEEecCCc--cEEEEcCCCC----CCcee-------------
Q 036097          215 EDLIFEFCEGLK-S--IKLFGRSKLRDIKIKGGREAEEVNINALNG--HSITVVSPLP----SGKIN-------------  272 (481)
Q Consensus       215 e~L~l~~~~~~~-~--l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L--~~L~l~~~~~----~~~~~-------------  272 (481)
                      ++|++++|.-.. .  -.+..+++|+.|+++++.........+++|  +.|+++++.-    ..+..             
T Consensus        93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l  172 (520)
T 2z7x_B           93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF  172 (520)
T ss_dssp             SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred             cEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence            888888875221 1  234567888888888876222222245566  8888876521    11111             


Q ss_pred             -------------------------------------------ccCCCCCcEEEEE---echhhhHHhhh--cCCcccEE
Q 036097          273 -------------------------------------------EVSCKNLKSLFLC---ITSVVDETLSY--HITRLVVL  304 (481)
Q Consensus       273 -------------------------------------------~~~~~~L~~L~l~---~~~~~~~~~~~--~~~~L~~L  304 (481)
                                                                 +..+++|+.|++.   +++..+..+..  ..++|+.|
T Consensus       173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L  252 (520)
T 2z7x_B          173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF  252 (520)
T ss_dssp             CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred             ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence                                                       2233444444444   22222222221  23466777


Q ss_pred             Eeccccccccccccc-----ccC--------------------------CcccEEEecCCCCccccc--ccCCCcceeEe
Q 036097          305 ECLGLIVCFELQNIK-----ISS--------------------------PSLKRLEIFKCTKLAAVE--IETPNLSKCKY  351 (481)
Q Consensus       305 ~L~~~~~c~~l~~l~-----~~~--------------------------~~L~~L~l~~c~~l~~~~--~~~p~L~~L~~  351 (481)
                      +++++.....+....     ...                          .+|+.|++++|. +..+.  ...++|++|.+
T Consensus       253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L  331 (520)
T 2z7x_B          253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDF  331 (520)
T ss_dssp             EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSC-CCCCCCCSSCCCCCEEEC
T ss_pred             EeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCc-cccccchhhCCcccEEEe
Confidence            766633221111111     112                          235555555543 22222  56788999998


Q ss_pred             cccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceee-echhhhccCCCCCCCCceE
Q 036097          352 NGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVI-VPKELRQILPPPLSGVKHL  430 (481)
Q Consensus       352 ~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~-~~~~~~~~~~~~l~~L~~L  430 (481)
                      +++.+.......+ ..+++|+.+++..+.-.  .+..++..+..+.+|+.|+++.+.... +|+.    .+..+++|++|
T Consensus       332 s~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~--~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~----~~~~l~~L~~L  404 (520)
T 2z7x_B          332 SNNLLTDTVFENC-GHLTELETLILQMNQLK--ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG----DCSWTKSLLSL  404 (520)
T ss_dssp             CSSCCCTTTTTTC-CCCSSCCEEECCSSCCC--BHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC----SCCCCTTCCEE
T ss_pred             ECCccChhhhhhh-ccCCCCCEEEccCCccC--ccccchHHHhhCCCCCEEECCCCcCCcccccc----hhccCccCCEE
Confidence            8877665333223 27788888888665521  122334444455555558888775444 5532    12334455555


Q ss_pred             EEEec
Q 036097          431 NFSIS  435 (481)
Q Consensus       431 ~l~~~  435 (481)
                      +++.+
T Consensus       405 ~Ls~N  409 (520)
T 2z7x_B          405 NMSSN  409 (520)
T ss_dssp             ECCSS
T ss_pred             ECcCC
Confidence            55544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.54  E-value=1.4e-14  Score=157.55  Aligned_cols=100  Identities=14%  Similarity=0.089  Sum_probs=52.5

Q ss_pred             CCccEEEEcCCC--CCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEE
Q 036097          255 LNGHSITVVSPL--PSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLE  329 (481)
Q Consensus       255 p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~  329 (481)
                      ++|+.|+++++.  +..+..+..+++|+.|+++   ++. .....+.++++|+.|++++|.+..........+++|+.|+
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  344 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID  344 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE-ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC-CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence            567777777662  1233456777888888876   221 1223456677777777777432211112222345666666


Q ss_pred             ecCCCCcccc----cccCCCcceeEeccccc
Q 036097          330 IFKCTKLAAV----EIETPNLSKCKYNGGVV  356 (481)
Q Consensus       330 l~~c~~l~~~----~~~~p~L~~L~~~~~~~  356 (481)
                      ++++. +..+    ....++|+.|.++++.+
T Consensus       345 L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l  374 (844)
T 3j0a_A          345 LQKNH-IAIIQDQTFKFLEKLQTLDLRDNAL  374 (844)
T ss_dssp             CCSCC-CCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred             CCCCC-CCccChhhhcCCCCCCEEECCCCCC
Confidence            66543 2221    12345566665555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.54  E-value=1.2e-14  Score=158.11  Aligned_cols=286  Identities=15%  Similarity=0.049  Sum_probs=157.7

Q ss_pred             hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeecc-CCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097          135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILL-EFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL  213 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  213 (481)
                      .+++++|+|+.+  .. ....|..+..+++|++|+|++|... .+++.....+++|++|+|++|.+.... ...+..+++
T Consensus        23 p~~l~~LdLs~N--~i-~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~   98 (844)
T 3j0a_A           23 LNTTERLLLSFN--YI-RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH-PDAFQGLFH   98 (844)
T ss_dssp             CTTCCEEEEESC--CC-CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC-TTSSCSCSS
T ss_pred             CCCcCEEECCCC--cC-CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC-HhHccCCcc
Confidence            357888888876  22 2233556667888888888887432 333445667888888888888765321 223667888


Q ss_pred             cceeEeeeecCcce----EeecCCCCCcEEEEccCCCCc----eEEEecCCccEEEEcCC--CCCCceeccCC--CCCcE
Q 036097          214 IEDLIFEFCEGLKS----IKLFGRSKLRDIKIKGGREAE----EVNINALNGHSITVVSP--LPSGKINEVSC--KNLKS  281 (481)
Q Consensus       214 Le~L~l~~~~~~~~----l~i~~~~~L~~L~l~~~~~~~----~~~~~~p~L~~L~l~~~--~~~~~~~~~~~--~~L~~  281 (481)
                      |++|++++|.-...    ..+..+++|+.|++++|....    .....+++|+.|+++++  .+..+..+..+  ++|+.
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~  178 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF  178 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence            88888887743221    125567888888888776211    11235678888888877  22233344444  77888


Q ss_pred             EEEE---echhhhHHhhhcCC------cccEEEecccccccccc-cc------------c--------------------
Q 036097          282 LFLC---ITSVVDETLSYHIT------RLVVLECLGLIVCFELQ-NI------------K--------------------  319 (481)
Q Consensus       282 L~l~---~~~~~~~~~~~~~~------~L~~L~L~~~~~c~~l~-~l------------~--------------------  319 (481)
                      |++.   +.... ...+..++      +|+.|++++|....... .+            .                    
T Consensus       179 L~L~~n~l~~~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~  257 (844)
T 3j0a_A          179 FSLAANSLYSRV-SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ  257 (844)
T ss_dssp             CEECCSBSCCCC-CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGG
T ss_pred             EECCCCcccccc-ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCCh
Confidence            8776   22211 11112222      38888888742211100 00            0                    


Q ss_pred             -----ccCCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHH-
Q 036097          320 -----ISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIEL-  389 (481)
Q Consensus       320 -----~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~-  389 (481)
                           ...++|+.|+++++. +..    .....++|+.|.+.++.+.......+. .+++|+.+++..+.-     ..+ 
T Consensus       258 ~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~l-----~~~~  330 (844)
T 3j0a_A          258 NTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYNLL-----GELY  330 (844)
T ss_dssp             TTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESCCC-----SCCC
T ss_pred             hhhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCCCC-----CccC
Confidence                 002456667766654 221    223456677777766655433222222 566777777755431     011 


Q ss_pred             HhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecc
Q 036097          390 IAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISI  436 (481)
Q Consensus       390 ~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  436 (481)
                      +..+..+.+|+.|+++.+....++.    ..+..+++|+.|+++.+.
T Consensus       331 ~~~~~~l~~L~~L~L~~N~i~~~~~----~~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          331 SSNFYGLPKVAYIDLQKNHIAIIQD----QTFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             SCSCSSCTTCCEEECCSCCCCCCCS----SCSCSCCCCCEEEEETCC
T ss_pred             HHHhcCCCCCCEEECCCCCCCccCh----hhhcCCCCCCEEECCCCC
Confidence            2334444455557776554433332    124446677777776654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.54  E-value=8.8e-15  Score=155.53  Aligned_cols=83  Identities=19%  Similarity=0.169  Sum_probs=49.8

Q ss_pred             CCeeEEEEEEeecCCcccccC-CcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHH-hcCCCc
Q 036097          136 STVKELELHTILRGDRLYHLP-QMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENL-VAGCPL  213 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l-~~~~p~  213 (481)
                      .++++|+++.+    ....++ ..+..+++|++|++++|.+...+......+++|++|+++++.+.......+ ...+++
T Consensus        97 ~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~  172 (680)
T 1ziw_A           97 TNLTELHLMSN----SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS  172 (680)
T ss_dssp             TTCSEEECCSS----CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCE
T ss_pred             CCCCEEECCCC----ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhcccccc
Confidence            56777776654    223344 345567777777777777655544445567777777777776644221111 234677


Q ss_pred             cceeEeeee
Q 036097          214 IEDLIFEFC  222 (481)
Q Consensus       214 Le~L~l~~~  222 (481)
                      |++|++++|
T Consensus       173 L~~L~L~~n  181 (680)
T 1ziw_A          173 LKKLELSSN  181 (680)
T ss_dssp             ESEEECTTC
T ss_pred             ccEEECCCC
Confidence            777777765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.53  E-value=1.8e-14  Score=145.26  Aligned_cols=292  Identities=10%  Similarity=-0.003  Sum_probs=185.4

Q ss_pred             hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      .+++++|+++.+    ....+| .+..+++|++|++++|.+...+   ...+++|++|+++++.+.+-.    +..+++|
T Consensus        41 l~~L~~L~Ls~n----~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L  108 (457)
T 3bz5_A           41 LATLTSLDCHNS----SITDMT-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD----VTPLTKL  108 (457)
T ss_dssp             HTTCCEEECCSS----CCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC----CTTCTTC
T ss_pred             cCCCCEEEccCC----CcccCh-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee----cCCCCcC
Confidence            478888888876    233455 5678899999999999886653   567889999999998876531    6778999


Q ss_pred             ceeEeeeecCcceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhh
Q 036097          215 EDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVD  291 (481)
Q Consensus       215 e~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~  291 (481)
                      ++|++++|. +..+.+..+++|+.|+++++..-..-...+++|+.|+++++.......+..+++|+.|+++   ++.  +
T Consensus       109 ~~L~L~~N~-l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~--l  185 (457)
T 3bz5_A          109 TYLNCDTNK-LTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE--L  185 (457)
T ss_dssp             CEEECCSSC-CSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC--C
T ss_pred             CEEECCCCc-CCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce--e
Confidence            999998884 3444567788999999988862111123577889999888732233367888899999887   333  2


Q ss_pred             HHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccccc-ccCCCcceeEecccccCCcchhhhhccCCC
Q 036097          292 ETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVE-IETPNLSKCKYNGGVVPFSSSTALKLLETD  370 (481)
Q Consensus       292 ~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~-~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~  370 (481)
                      .  +..+++|+.|++++|.+.. +  -...+++|+.|+++++. +..++ ..+++|+.|.++++.+.....    ..+++
T Consensus       186 ~--l~~l~~L~~L~l~~N~l~~-~--~l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~l~~~~~----~~l~~  255 (457)
T 3bz5_A          186 D--VSQNKLLNRLNCDTNNITK-L--DLNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDV----STLSK  255 (457)
T ss_dssp             C--CTTCTTCCEEECCSSCCSC-C--CCTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCCC----TTCTT
T ss_pred             c--cccCCCCCEEECcCCcCCe-e--ccccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCcCCCcCH----HHCCC
Confidence            2  5678889999988843221 1  12336788888888864 33333 346788888888876654433    35666


Q ss_pred             ccEEEEeeChh------hHHHHHHHHhhcccceeeEEEEEEeec-eeeechh---hhccCCCCCCCCceEEEEecccchh
Q 036097          371 LNLYTINFDPQ------WYVKFIELIAKFHQWSKVLNLLSECGE-SVIVPKE---LRQILPPPLSGVKHLNFSISIPFKK  440 (481)
Q Consensus       371 L~~l~l~~~~~------~~~~~~~~~~~l~~L~~l~~L~i~~~~-~~~~~~~---~~~~~~~~l~~L~~L~l~~~~~~~~  440 (481)
                      |+.+.+....-      .....+.++  +..+.+|+.|+++.+. ...+|..   +....+...++|+.|+++.+.-.+ 
T Consensus       256 L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-  332 (457)
T 3bz5_A          256 LTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-  332 (457)
T ss_dssp             CCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-
T ss_pred             CCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-
Confidence            66665422110      000001111  1223344448887554 3333321   111224445688888887665211 


Q ss_pred             hhHHHHHhhhhhcCcccceEEE
Q 036097          441 FAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       441 ~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                            ++  +.+||+|+.|.+
T Consensus       333 ------l~--l~~l~~L~~L~l  346 (457)
T 3bz5_A          333 ------LD--VSHNTKLKSLSC  346 (457)
T ss_dssp             ------CC--CTTCTTCSEEEC
T ss_pred             ------cc--cccCCcCcEEEC
Confidence                  22  678999999998

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.52  E-value=2.9e-14  Score=137.69  Aligned_cols=262  Identities=12%  Similarity=0.023  Sum_probs=146.7

Q ss_pred             CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEEc
Q 036097          163 ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIK  242 (481)
Q Consensus       163 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~  242 (481)
                      ++|++|++++|.+...+......+++|++|+++++.+.+-. ...+..+++|++|++++|. +..+...           
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~l~~~-----------  118 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQ-LKELPEK-----------  118 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSC-CSBCCSS-----------
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCc-CCccChh-----------
Confidence            45555666655555444334445555556655555443211 1123445555555555442 1111111           


Q ss_pred             cCCCCceEEEecCCccEEEEcCCC-C-CCceeccCCCCCcEEEEE---ech-hhhHHhhhcCCcccEEEecccccccccc
Q 036097          243 GGREAEEVNINALNGHSITVVSPL-P-SGKINEVSCKNLKSLFLC---ITS-VVDETLSYHITRLVVLECLGLIVCFELQ  316 (481)
Q Consensus       243 ~~~~~~~~~~~~p~L~~L~l~~~~-~-~~~~~~~~~~~L~~L~l~---~~~-~~~~~~~~~~~~L~~L~L~~~~~c~~l~  316 (481)
                                ..++|++|+++++. . .....+..+++|+.|+++   +.. ......+..+++|+.|+++++.+    +
T Consensus       119 ----------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l----~  184 (330)
T 1xku_A          119 ----------MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI----T  184 (330)
T ss_dssp             ----------CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC----C
T ss_pred             ----------hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc----c
Confidence                      11456666666552 1 122346677777777766   222 12334567788888888887322    2


Q ss_pred             cccc-cCCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHh
Q 036097          317 NIKI-SSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIA  391 (481)
Q Consensus       317 ~l~~-~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~  391 (481)
                      .++. ..++|+.|+++++. +..    .....++|+.|.++++.+.......+. .+++|+.+++..+.     +..++.
T Consensus       185 ~l~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N~-----l~~lp~  257 (330)
T 1xku_A          185 TIPQGLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA-NTPHLRELHLNNNK-----LVKVPG  257 (330)
T ss_dssp             SCCSSCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG-GSTTCCEEECCSSC-----CSSCCT
T ss_pred             cCCccccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhcc-CCCCCCEEECCCCc-----CccCCh
Confidence            2221 13688888888765 332    233567888888888766543322222 67888888887664     113444


Q ss_pred             hcccceeeEEEEEEeeceeeechhhhccC--CCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097          392 KFHQWSKVLNLLSECGESVIVPKELRQIL--PPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       392 ~l~~L~~l~~L~i~~~~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                      .+..+..|+.|+++.+....++...+...  ...+..++.|++..+....    ....+..+..+++|+.+.+
T Consensus       258 ~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~----~~i~~~~f~~~~~l~~l~L  326 (330)
T 1xku_A          258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY----WEIQPSTFRCVYVRAAVQL  326 (330)
T ss_dssp             TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG----GGSCGGGGTTCCCGGGEEC
T ss_pred             hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc----cccCccccccccceeEEEe
Confidence            55566666669999887666664433221  1234678889888765322    2233456777888988877

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.51  E-value=1.9e-13  Score=135.12  Aligned_cols=252  Identities=14%  Similarity=0.060  Sum_probs=173.6

Q ss_pred             hCCeeEEEEEEeecCCcccccC-CcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097          135 ESTVKELELHTILRGDRLYHLP-QMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL  213 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  213 (481)
                      .+++++|+++.+    ....++ ..+..+++|++|++++|.+...+......+++|++|+++++.+..-. ...+..+++
T Consensus        92 l~~L~~L~L~~n----~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~  166 (390)
T 3o6n_A           92 AHTIQKLYMGFN----AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTS  166 (390)
T ss_dssp             CTTCCEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTT
T ss_pred             CCCcCEEECCCC----CCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCC
Confidence            468999999876    233444 44567999999999999998777655678999999999999875421 223678999


Q ss_pred             cceeEeeeecCcceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhh
Q 036097          214 IEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVV  290 (481)
Q Consensus       214 Le~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~  290 (481)
                      |++|++++|. +..+.+..+++|+.|+++++. +..+ ...++|+.|+++++.-... .....++|+.|+++   +++. 
T Consensus       167 L~~L~l~~n~-l~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~l~~n~l~~~-  241 (390)
T 3o6n_A          167 LQNLQLSSNR-LTHVDLSLIPSLFHANVSYNL-LSTL-AIPIAVEELDASHNSINVV-RGPVNVELTILKLQHNNLTDT-  241 (390)
T ss_dssp             CCEEECCSSC-CSBCCGGGCTTCSEEECCSSC-CSEE-ECCSSCSEEECCSSCCCEE-ECCCCSSCCEEECCSSCCCCC-
T ss_pred             CCEEECCCCc-CCccccccccccceeeccccc-cccc-CCCCcceEEECCCCeeeec-cccccccccEEECCCCCCccc-
Confidence            9999999885 344456667999999998875 2222 2346899999988732211 22446789999987   3332 


Q ss_pred             hHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcccc---cccCCCcceeEecccccCCcchhhhhcc
Q 036097          291 DETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV---EIETPNLSKCKYNGGVVPFSSSTALKLL  367 (481)
Q Consensus       291 ~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~L~~~~~~~~~~~~~~l~~~  367 (481)
                        ..+..+++|+.|++++|.+..........+++|+.|+++++. +..+   ....|+|+.|.++++.+..... .+ ..
T Consensus       242 --~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~-~~  316 (390)
T 3o6n_A          242 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVER-NQ-PQ  316 (390)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCCCCCGG-GH-HH
T ss_pred             --HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcceecCc-cc-cc
Confidence              456889999999999943322222233346899999999865 4432   3356899999999987653322 12 26


Q ss_pred             CCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeec
Q 036097          368 ETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGE  408 (481)
Q Consensus       368 ~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~  408 (481)
                      +++|+.+++..+.--     .+  .+..+..|+.|++++|.
T Consensus       317 l~~L~~L~L~~N~i~-----~~--~~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          317 FDRLENLYLDHNSIV-----TL--KLSTHHTLKNLTLSHND  350 (390)
T ss_dssp             HTTCSEEECCSSCCC-----CC--CCCTTCCCSEEECCSSC
T ss_pred             cCcCCEEECCCCccc-----ee--CchhhccCCEEEcCCCC
Confidence            789999999766511     11  13444455559998774

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.51  E-value=4.3e-15  Score=155.35  Aligned_cols=294  Identities=12%  Similarity=0.056  Sum_probs=193.1

Q ss_pred             hCCeeEEEEEEeecCCcccccCCccc-CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097          135 ESTVKELELHTILRGDRLYHLPQMVV-CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL  213 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  213 (481)
                      ..+++.+++..+    ....+|..++ .+++|++|+|++|.+...++.....+++|++|+|++|.+..- ....+..+++
T Consensus        50 l~~l~~l~l~~~----~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~  124 (597)
T 3oja_B           50 LNNQKIVTFKNS----TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPL  124 (597)
T ss_dssp             GCCCSEEEESSC----EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTT
T ss_pred             CCCceEEEeeCC----CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCC
Confidence            367888887665    4566777654 589999999999988777766777889999999999987541 2233578899


Q ss_pred             cceeEeeeecCcceEe---ecCCCCCcEEEEccCCCC---ceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEEec
Q 036097          214 IEDLIFEFCEGLKSIK---LFGRSKLRDIKIKGGREA---EEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCIT  287 (481)
Q Consensus       214 Le~L~l~~~~~~~~l~---i~~~~~L~~L~l~~~~~~---~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  287 (481)
                      |++|++++|. +..+.   +..+++|+.|++++|...   ......+++|+.|+++++.-. ...+..+++|+.|+++  
T Consensus       125 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~l~~L~~L~l~--  200 (597)
T 3oja_B          125 LTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVS--  200 (597)
T ss_dssp             CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCCGGGCTTCSEEECC--
T ss_pred             CCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcChhhhhhhhhhhcc--
Confidence            9999999884 33332   345789999999888621   111235688899998887321 1246778888888865  


Q ss_pred             hhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccc--ccccCCCcceeEecccccCCcchhhhh
Q 036097          288 SVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA--VEIETPNLSKCKYNGGVVPFSSSTALK  365 (481)
Q Consensus       288 ~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~--~~~~~p~L~~L~~~~~~~~~~~~~~l~  365 (481)
                      ...+. .+...++|+.|++++|   ..-.-.....++|+.|++++|. +..  .....++|+.|.++++.+.......+.
T Consensus       201 ~n~l~-~l~~~~~L~~L~ls~n---~l~~~~~~~~~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~  275 (597)
T 3oja_B          201 YNLLS-TLAIPIAVEELDASHN---SINVVRGPVNVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFV  275 (597)
T ss_dssp             SSCCS-EEECCTTCSEEECCSS---CCCEEECSCCSCCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred             cCccc-cccCCchhheeeccCC---cccccccccCCCCCEEECCCCC-CCCChhhccCCCCCEEECCCCccCCCCHHHhc
Confidence            11111 1234567888888883   2211112224689999998865 322  334578899999988776544333333


Q ss_pred             ccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHH
Q 036097          366 LLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQ  445 (481)
Q Consensus       366 ~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  445 (481)
                       .+++|+.+++..+.-     ..++..+..+.+|+.|+++++....+|+.     +..+++|+.|+++.+.-..      
T Consensus       276 -~l~~L~~L~Ls~N~l-----~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~-----~~~l~~L~~L~L~~N~l~~------  338 (597)
T 3oja_B          276 -KMQRLERLYISNNRL-----VALNLYGQPIPTLKVLDLSHNHLLHVERN-----QPQFDRLENLYLDHNSIVT------  338 (597)
T ss_dssp             -TCSSCCEEECTTSCC-----CEEECSSSCCTTCCEEECCSSCCCCCGGG-----HHHHTTCSEEECCSSCCCC------
T ss_pred             -CccCCCEEECCCCCC-----CCCCcccccCCCCcEEECCCCCCCccCcc-----cccCCCCCEEECCCCCCCC------
Confidence             778888888865541     11222223344455588887766666654     3446789999998776322      


Q ss_pred             HHhhhhhcCcccceEEE
Q 036097          446 VVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       446 ~l~~ll~~~p~L~~L~l  462 (481)
                       ++  +..+|+|+.|.+
T Consensus       339 -~~--~~~~~~L~~L~l  352 (597)
T 3oja_B          339 -LK--LSTHHTLKNLTL  352 (597)
T ss_dssp             -CC--CCTTCCCSEEEC
T ss_pred             -cC--hhhcCCCCEEEe
Confidence             11  566889999988

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.50  E-value=9.9e-14  Score=144.44  Aligned_cols=256  Identities=15%  Similarity=0.085  Sum_probs=172.8

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      .+++.|+++.+    ....+|..+.  ++|++|+|++|.+..++.    .+++|++|+|++|.++.  +   -...++|+
T Consensus        40 ~~l~~L~ls~n----~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~--l---p~~l~~L~  104 (622)
T 3g06_A           40 NGNAVLNVGES----GLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTS--L---PVLPPGLL  104 (622)
T ss_dssp             HCCCEEECCSS----CCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSC--C---CCCCTTCC
T ss_pred             CCCcEEEecCC----CcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCc--C---CCCCCCCC
Confidence            46888888765    3447777665  789999999998876653    57899999999998753  1   12678999


Q ss_pred             eeEeeeecCcceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCC-CCCceeccCCCCCcEEEEEechhhhHHh
Q 036097          216 DLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPL-PSGKINEVSCKNLKSLFLCITSVVDETL  294 (481)
Q Consensus       216 ~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~  294 (481)
                      +|++++|. +..+.. .+++|+.|++++|. +..+....++|++|+++++. ...+   ...++|+.|++.  ...+..+
T Consensus       105 ~L~Ls~N~-l~~l~~-~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N~l~~l~---~~~~~L~~L~L~--~N~l~~l  176 (622)
T 3g06_A          105 ELSIFSNP-LTHLPA-LPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDNQLASLP---ALPSELCKLWAY--NNQLTSL  176 (622)
T ss_dssp             EEEECSCC-CCCCCC-CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECC--SSCCSCC
T ss_pred             EEECcCCc-CCCCCC-CCCCcCEEECCCCC-CCcCCCCCCCCCEEECcCCcCCCcC---CccCCCCEEECC--CCCCCCC
Confidence            99998874 222222 34889999998885 22233345899999998882 2222   245678888765  2222222


Q ss_pred             hhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcccccccCCCcceeEecccccCCcchhhhhccCCCccEE
Q 036097          295 SYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLY  374 (481)
Q Consensus       295 ~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l  374 (481)
                      ...+++|+.|++++|.    ++.++...++|+.|++++|. +..++...++|++|.++++.+.....     .+++|+.+
T Consensus       177 ~~~~~~L~~L~Ls~N~----l~~l~~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N~L~~lp~-----~l~~L~~L  246 (622)
T 3g06_A          177 PMLPSGLQELSVSDNQ----LASLPTLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGNRLTSLPV-----LPSELKEL  246 (622)
T ss_dssp             CCCCTTCCEEECCSSC----CSCCCCCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSCCCC-----CCTTCCEE
T ss_pred             cccCCCCcEEECCCCC----CCCCCCccchhhEEECcCCc-ccccCCCCCCCCEEEccCCccCcCCC-----CCCcCcEE
Confidence            3567889999998843    33344455788899988854 55566566889999988877665433     66888888


Q ss_pred             EEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEeccc
Q 036097          375 TINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIP  437 (481)
Q Consensus       375 ~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  437 (481)
                      +++.+.     +..++..+++|+.   |++++|....+|+.     +..+++|+.|+|+.+.-
T Consensus       247 ~Ls~N~-----L~~lp~~~~~L~~---L~Ls~N~L~~lp~~-----l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          247 MVSGNR-----LTSLPMLPSGLLS---LSVYRNQLTRLPES-----LIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             ECCSSC-----CSCCCCCCTTCCE---EECCSSCCCSCCGG-----GGGSCTTCEEECCSCCC
T ss_pred             ECCCCC-----CCcCCcccccCcE---EeCCCCCCCcCCHH-----HhhccccCEEEecCCCC
Confidence            886654     1122233444444   88887776677755     45578899999987753

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.49  E-value=1.5e-13  Score=132.47  Aligned_cols=226  Identities=15%  Similarity=0.097  Sum_probs=154.2

Q ss_pred             CCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--eecCCCCCcEE
Q 036097          162 SETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI--KLFGRSKLRDI  239 (481)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l--~i~~~~~L~~L  239 (481)
                      .+++++|+|+++.+..+|. ....+++|++|+|+++.+.  .+...+..+++|++|++++|.- ..+  .+..+++|+.|
T Consensus        80 ~~~l~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L  155 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLREL  155 (328)
T ss_dssp             STTCCEEEEESSCCSSCCS-CGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEE
T ss_pred             ccceeEEEccCCCchhcCh-hhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEE
Confidence            4789999999999976664 4567999999999999886  2333467889999999998852 232  24456777777


Q ss_pred             EEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE-echhhhHHhhhcCCcccEEEecccccccccccc
Q 036097          240 KIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC-ITSVVDETLSYHITRLVVLECLGLIVCFELQNI  318 (481)
Q Consensus       240 ~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l  318 (481)
                      ++++|.....+.   ..+....       ....+..+++|+.|+++ -.-..++..+..+++|+.|++++|.+.. +...
T Consensus       156 ~L~~n~~~~~~p---~~~~~~~-------~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~  224 (328)
T 4fcg_A          156 SIRACPELTELP---EPLASTD-------ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPA  224 (328)
T ss_dssp             EEEEETTCCCCC---SCSEEEC--------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGG
T ss_pred             ECCCCCCccccC---hhHhhcc-------chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-Cchh
Confidence            777765222211   0111111       11235679999999998 1112455667899999999999954332 2222


Q ss_pred             cccCCcccEEEecCCCCcccc---cccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhccc
Q 036097          319 KISSPSLKRLEIFKCTKLAAV---EIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQ  395 (481)
Q Consensus       319 ~~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~  395 (481)
                      ...+++|+.|++++|.....+   ....++|+.|.++++.........+. ++++|+.+++..+.    ..+.++..+.+
T Consensus       225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~----~~~~iP~~l~~  299 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH-RLTQLEKLDLRGCV----NLSRLPSLIAQ  299 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG-GCTTCCEEECTTCT----TCCCCCGGGGG
T ss_pred             hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh-cCCCCCEEeCCCCC----chhhccHHHhh
Confidence            335689999999998765543   34578999999998665444333333 88999999998876    23445677777


Q ss_pred             ceeeEEEEEEee
Q 036097          396 WSKVLNLLSECG  407 (481)
Q Consensus       396 L~~l~~L~i~~~  407 (481)
                      +.++..+.+..+
T Consensus       300 L~~L~~l~l~~~  311 (328)
T 4fcg_A          300 LPANCIILVPPH  311 (328)
T ss_dssp             SCTTCEEECCGG
T ss_pred             ccCceEEeCCHH
Confidence            777666776644

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.48  E-value=7.1e-14  Score=140.97  Aligned_cols=154  Identities=14%  Similarity=0.127  Sum_probs=78.1

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      +++++|+++.+  .  ...+|  +..+++|++|++++|.+...+   ...+++|++|+++++.+.+-  .  +..+++|+
T Consensus        64 ~~L~~L~Ls~n--~--l~~~~--~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~  130 (457)
T 3bz5_A           64 TGLTKLICTSN--N--ITTLD--LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLT  130 (457)
T ss_dssp             TTCSEEECCSS--C--CSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCC--C--CTTCTTCC
T ss_pred             CCCCEEEccCC--c--CCeEc--cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCee--c--CCCCCcCC
Confidence            56666666655  1  22233  445666666666666654432   44566666666666655431  1  45566666


Q ss_pred             eeEeeeecCcceEeecCCCCCcEEEEccCCCCceEE-EecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhh
Q 036097          216 DLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVN-INALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVD  291 (481)
Q Consensus       216 ~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~-~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~  291 (481)
                      +|++++|. +..+.+..+++|+.|++++|.....+. ..+++|+.|+++++.-.. ..+..+++|+.|+++   ++..  
T Consensus       131 ~L~l~~N~-l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~l~~l~~L~~L~l~~N~l~~~--  206 (457)
T 3bz5_A          131 YLNCARNT-LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LDVSQNKLLNRLNCDTNNITKL--  206 (457)
T ss_dssp             EEECTTSC-CSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CCCTTCTTCCEEECCSSCCSCC--
T ss_pred             EEECCCCc-cceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-eccccCCCCCEEECcCCcCCee--
Confidence            66666553 222344455666666666653222221 134556666665551111 114555555555554   2211  


Q ss_pred             HHhhhcCCcccEEEecc
Q 036097          292 ETLSYHITRLVVLECLG  308 (481)
Q Consensus       292 ~~~~~~~~~L~~L~L~~  308 (481)
                        -+..+++|+.|++++
T Consensus       207 --~l~~l~~L~~L~Ls~  221 (457)
T 3bz5_A          207 --DLNQNIQLTFLDCSS  221 (457)
T ss_dssp             --CCTTCTTCSEEECCS
T ss_pred             --ccccCCCCCEEECcC
Confidence              134455555555555

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.47  E-value=3.3e-14  Score=137.45  Aligned_cols=277  Identities=10%  Similarity=0.020  Sum_probs=155.2

Q ss_pred             CccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE---eecCCCCCcEEE
Q 036097          164 TVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI---KLFGRSKLRDIK  240 (481)
Q Consensus       164 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l---~i~~~~~L~~L~  240 (481)
                      +++.++++++.+..+|..   -.++|+.|+++++.+..-. ...+..+++|++|++++|. +..+   .+..+++|+.|+
T Consensus        34 ~l~~l~~~~~~l~~ip~~---~~~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKE---ISPDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCSSCCSC---CCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCccccCCC---CCCCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEE
Confidence            455555555555443321   1245555555555443211 1123455555555555553 2222   233445666666


Q ss_pred             EccCCCCceEE-EecCCccEEEEcCC-CCC-CceeccCCCCCcEEEEE---echh-hhHHhhhcCCcccEEEeccccccc
Q 036097          241 IKGGREAEEVN-INALNGHSITVVSP-LPS-GKINEVSCKNLKSLFLC---ITSV-VDETLSYHITRLVVLECLGLIVCF  313 (481)
Q Consensus       241 l~~~~~~~~~~-~~~p~L~~L~l~~~-~~~-~~~~~~~~~~L~~L~l~---~~~~-~~~~~~~~~~~L~~L~L~~~~~c~  313 (481)
                      ++++... .+. ...++|++|+++++ ... ....+..+++|+.|++.   ++.. .....+..+ +|+.|++++|.+  
T Consensus       109 L~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l--  184 (332)
T 2ft3_A          109 ISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL--  184 (332)
T ss_dssp             CCSSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC--
T ss_pred             CCCCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC--
Confidence            6555411 110 01167777777776 222 22346778888888876   3321 222333444 888888888432  


Q ss_pred             cccccccc-CCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHH
Q 036097          314 ELQNIKIS-SPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIE  388 (481)
Q Consensus       314 ~l~~l~~~-~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~  388 (481)
                        +.++.. +++|++|+++++. +..    .....++|+.|.++++.+.......+. .+++|+.+++..+.     +..
T Consensus       185 --~~l~~~~~~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~-----l~~  255 (332)
T 2ft3_A          185 --TGIPKDLPETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS-FLPTLRELHLDNNK-----LSR  255 (332)
T ss_dssp             --SSCCSSSCSSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG-GCTTCCEEECCSSC-----CCB
T ss_pred             --CccCccccCCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh-CCCCCCEEECCCCc-----Cee
Confidence              222221 3688888888864 332    233568899999988766544332332 78899999987654     112


Q ss_pred             HHhhcccceeeEEEEEEeeceeeechhhhccCC--CCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097          389 LIAKFHQWSKVLNLLSECGESVIVPKELRQILP--PPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       389 ~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                      ++..+..+.+|+.|+++.+....++........  ..+.+|+.|++..+....    ....+..+..+++|+.+.+
T Consensus       256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~----~~~~~~~~~~l~~L~~l~l  327 (332)
T 2ft3_A          256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY----WEVQPATFRCVTDRLAIQF  327 (332)
T ss_dssp             CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG----GGSCGGGGTTBCCSTTEEC
T ss_pred             cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc----cccCcccccccchhhhhhc
Confidence            344455666666699998876666643222211  124678999998876332    2234566788999999887

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.46  E-value=4.6e-13  Score=130.53  Aligned_cols=255  Identities=13%  Similarity=0.021  Sum_probs=135.3

Q ss_pred             cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI--  228 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l--  228 (481)
                      ....+|..+.  ++|++|++++|.+...+......+++|++|+++++.+.+-. ...+..+++|++|++++|.- ..+  
T Consensus        42 ~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l-~~~~~  117 (353)
T 2z80_A           42 SLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNYL-SNLSS  117 (353)
T ss_dssp             TCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCC-SSCCH
T ss_pred             Cccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC-HhhcCCCCCCCEEECCCCcC-CcCCH
Confidence            4455665443  57888888888877666555667888888888888765411 12256678888888877742 222  


Q ss_pred             -eecCCCCCcEEEEccCC--CCce--EEEecCCccEEEEcCCC--CC-CceeccCCCCCcEEEEE---echhhhHHhhhc
Q 036097          229 -KLFGRSKLRDIKIKGGR--EAEE--VNINALNGHSITVVSPL--PS-GKINEVSCKNLKSLFLC---ITSVVDETLSYH  297 (481)
Q Consensus       229 -~i~~~~~L~~L~l~~~~--~~~~--~~~~~p~L~~L~l~~~~--~~-~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~  297 (481)
                       .+..+++|+.|+++++.  .+..  ....+++|+.|+++++.  .. .+..+..+++|++|+++   ++. .....+..
T Consensus       118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~  196 (353)
T 2z80_A          118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-YEPKSLKS  196 (353)
T ss_dssp             HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-ECTTTTTT
T ss_pred             hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc-cCHHHHhc
Confidence             13445667777666654  1111  12234555555555441  11 12234444455555444   111 11222334


Q ss_pred             CCcccEEEecccccccccccccccCCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchhhh--hccCCCc
Q 036097          298 ITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTAL--KLLETDL  371 (481)
Q Consensus       298 ~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l--~~~~~~L  371 (481)
                      +++|++|++++                        +. +..    +....++|+.|.++++.+.......+  ....+.+
T Consensus       197 l~~L~~L~l~~------------------------n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l  251 (353)
T 2z80_A          197 IQNVSHLILHM------------------------KQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLI  251 (353)
T ss_dssp             CSEEEEEEEEC------------------------SC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCC
T ss_pred             cccCCeecCCC------------------------Cc-cccchhhhhhhcccccEEECCCCccccccccccccccccchh
Confidence            44444444444                        33 111    11123455555555443332111000  0134556


Q ss_pred             cEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhccCCCCCCCCceEEEEecccch
Q 036097          372 NLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFK  439 (481)
Q Consensus       372 ~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  439 (481)
                      +.+.+....-....+..++..+.++.+|+.|+++++....+|+.+    +..+++|++|+++.+.-.+
T Consensus       252 ~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~----~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI----FDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCSSCBCC
T ss_pred             hccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHH----HhcCCCCCEEEeeCCCccC
Confidence            666664443222234455555666666666999988777777542    3567899999999875333

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.46  E-value=1.7e-13  Score=142.30  Aligned_cols=83  Identities=11%  Similarity=0.003  Sum_probs=43.2

Q ss_pred             cccEEEecCCCCccccc--ccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEE
Q 036097          324 SLKRLEIFKCTKLAAVE--IETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLN  401 (481)
Q Consensus       324 ~L~~L~l~~c~~l~~~~--~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~  401 (481)
                      +|+.|+++++.- ..+.  ...++|+.|.++++.+.......+ ..+++|+.+++..+.-.  .+..++..+.++.+|+.
T Consensus       332 ~L~~L~l~~n~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~--~~~~~~~~~~~l~~L~~  407 (562)
T 3a79_B          332 NIKMLSISDTPF-IHMVCPPSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLK--NFFKVALMTKNMSSLET  407 (562)
T ss_dssp             CCSEEEEESSCC-CCCCCCSSCCCCCEEECCSSCCCTTTTTTC-CSCSSCCEEECCSSCCC--BTTHHHHTTTTCTTCCE
T ss_pred             cceEEEccCCCc-ccccCccCCCCceEEECCCCccccchhhhh-cccCCCCEEECCCCCcC--CcccchhhhcCCCCCCE
Confidence            356666665442 2221  456778888877766554322222 26677777777554311  11123334444445455


Q ss_pred             EEEEeecee
Q 036097          402 LLSECGESV  410 (481)
Q Consensus       402 L~i~~~~~~  410 (481)
                      |+++.+...
T Consensus       408 L~l~~N~l~  416 (562)
T 3a79_B          408 LDVSLNSLN  416 (562)
T ss_dssp             EECTTSCCB
T ss_pred             EECCCCcCC
Confidence            777755443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.45  E-value=1.3e-13  Score=138.82  Aligned_cols=178  Identities=13%  Similarity=0.037  Sum_probs=93.6

Q ss_pred             CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEEc
Q 036097          163 ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIK  242 (481)
Q Consensus       163 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~  242 (481)
                      ++|++|++++|.+..+|  ....+++|++|+++++.+..  +   -...++|++|++++|.--.--.+..+++|+.|+++
T Consensus       131 ~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~--l---p~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKK--L---PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYAD  203 (454)
T ss_dssp             TTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSC--C---CCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECC
T ss_pred             CCCCEEECcCCCCCCCc--ccCCCCCCCEEECCCCcCcc--c---CCCcccccEEECcCCcCCcCccccCCCCCCEEECC
Confidence            46666666666665544  34556666777766665542  1   11234667777666631111134456777777777


Q ss_pred             cCCCCceEEEecCCccEEEEcCCC-CCCceeccCCCCCcEEEEEechhhhHHhhhcCCcccEEEeccccccccccccccc
Q 036097          243 GGREAEEVNINALNGHSITVVSPL-PSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNIKIS  321 (481)
Q Consensus       243 ~~~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~  321 (481)
                      +|... .+....++|+.|+++++. ...+ .+..+++|+.|+++  ...+..+...+++|+.|++++|.    ++.++..
T Consensus       204 ~N~l~-~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~--~N~l~~l~~~~~~L~~L~l~~N~----l~~l~~~  275 (454)
T 1jl5_A          204 NNSLK-KLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYAD--NNLLKTLPDLPPSLEALNVRDNY----LTDLPEL  275 (454)
T ss_dssp             SSCCS-SCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECC--SSCCSSCCSCCTTCCEEECCSSC----CSCCCCC
T ss_pred             CCcCC-cCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECC--CCcCCcccccccccCEEECCCCc----ccccCcc
Confidence            76511 122223577888887772 2222 46777888888765  11111122234677777777632    2223333


Q ss_pred             CCcccEEEecCCCCcccccccCCCcceeEeccccc
Q 036097          322 SPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVV  356 (481)
Q Consensus       322 ~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~~~~  356 (481)
                      .++|+.|++++|. +..+....++|+.|.++++.+
T Consensus       276 ~~~L~~L~ls~N~-l~~l~~~~~~L~~L~l~~N~l  309 (454)
T 1jl5_A          276 PQSLTFLDVSENI-FSGLSELPPNLYYLNASSNEI  309 (454)
T ss_dssp             CTTCCEEECCSSC-CSEESCCCTTCCEEECCSSCC
T ss_pred             cCcCCEEECcCCc-cCcccCcCCcCCEEECcCCcC
Confidence            4566666666643 333222234555555555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.44  E-value=2.7e-13  Score=129.31  Aligned_cols=225  Identities=15%  Similarity=0.076  Sum_probs=155.6

Q ss_pred             cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChH-HHHHHhcCCCccceeEeeeecCcceE-
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQ-VIENLVAGCPLIEDLIFEFCEGLKSI-  228 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~l~~l~~~~p~Le~L~l~~~~~~~~l-  228 (481)
                      ....+|..+.  ++|++|++++|.+..++......+++|++|+++++.+... .....+..+++|++|++++|. +..+ 
T Consensus        18 ~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~   94 (306)
T 2z66_A           18 GLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMS   94 (306)
T ss_dssp             CCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEE
T ss_pred             CcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccCh
Confidence            4556666443  6899999999999877765567899999999999987641 111124468999999999885 2222 


Q ss_pred             -eecCCCCCcEEEEccCC--CCc--eEEEecCCccEEEEcCCC--CCCceeccCCCCCcEEEEE---echhhhHHhhhcC
Q 036097          229 -KLFGRSKLRDIKIKGGR--EAE--EVNINALNGHSITVVSPL--PSGKINEVSCKNLKSLFLC---ITSVVDETLSYHI  298 (481)
Q Consensus       229 -~i~~~~~L~~L~l~~~~--~~~--~~~~~~p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~  298 (481)
                       .+..+++|+.|+++++.  ...  .....+++|+.|+++++.  +..+..+..+++|+.|+++   +++..+...+..+
T Consensus        95 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  174 (306)
T 2z66_A           95 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL  174 (306)
T ss_dssp             EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred             hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhC
Confidence             35567999999999885  221  123357899999999883  2234457888999999987   5544456677889


Q ss_pred             CcccEEEecccccccccccccccCCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchhhhhccC-CCccE
Q 036097          299 TRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTALKLLE-TDLNL  373 (481)
Q Consensus       299 ~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~-~~L~~  373 (481)
                      ++|+.|++++|.+..........+++|+.|+++++. +..    .....++|+.|.++++.+.......+. .+ ++|+.
T Consensus       175 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~~~~~L~~  252 (306)
T 2z66_A          175 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ-HFPSSLAF  252 (306)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC-CCCTTCCE
T ss_pred             cCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHH-hhhccCCE
Confidence            999999999943322112222346889999999865 333    223468999999998877654332222 44 48888


Q ss_pred             EEEeeCh
Q 036097          374 YTINFDP  380 (481)
Q Consensus       374 l~l~~~~  380 (481)
                      +++..+.
T Consensus       253 L~L~~N~  259 (306)
T 2z66_A          253 LNLTQND  259 (306)
T ss_dssp             EECTTCC
T ss_pred             EEccCCC
Confidence            8885443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.43  E-value=3.9e-13  Score=139.96  Aligned_cols=251  Identities=14%  Similarity=0.060  Sum_probs=179.0

Q ss_pred             CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEEc
Q 036097          163 ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIK  242 (481)
Q Consensus       163 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~  242 (481)
                      .+++.|+++++.+..+|...   .++|++|++++|.+..  +   -..+++|++|++++|. +..+.. .+++|+.|+++
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l---~~~L~~L~L~~N~l~~--l---p~~l~~L~~L~Ls~N~-l~~lp~-~l~~L~~L~Ls  109 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCL---PAHITTLVIPDNNLTS--L---PALPPELRTLEVSGNQ-LTSLPV-LPPGLLELSIF  109 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCC---CTTCSEEEECSCCCSC--C---CCCCTTCCEEEECSCC-CSCCCC-CCTTCCEEEEC
T ss_pred             CCCcEEEecCCCcCccChhh---CCCCcEEEecCCCCCC--C---CCcCCCCCEEEcCCCc-CCcCCC-CCCCCCEEECc
Confidence            46899999999997766422   2899999999998853  1   1257999999999985 443333 46999999999


Q ss_pred             cCCCCceEEEecCCccEEEEcCCC-CCCceeccCCCCCcEEEEEechhhhHHhhhcCCcccEEEeccccccccccccccc
Q 036097          243 GGREAEEVNINALNGHSITVVSPL-PSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNIKIS  321 (481)
Q Consensus       243 ~~~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~  321 (481)
                      +|. +..+....++|+.|+++++. ...+.   .+++|++|+++  ...+..+...+++|+.|.+.+|.    ++.++..
T Consensus       110 ~N~-l~~l~~~l~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls--~N~l~~l~~~~~~L~~L~L~~N~----l~~l~~~  179 (622)
T 3g06_A          110 SNP-LTHLPALPSGLCKLWIFGNQLTSLPV---LPPGLQELSVS--DNQLASLPALPSELCKLWAYNNQ----LTSLPML  179 (622)
T ss_dssp             SCC-CCCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECC--SSCCSCCCCCCTTCCEEECCSSC----CSCCCCC
T ss_pred             CCc-CCCCCCCCCCcCEEECCCCCCCcCCC---CCCCCCEEECc--CCcCCCcCCccCCCCEEECCCCC----CCCCccc
Confidence            986 11222267899999999882 22222   35899999976  22222233456889999999843    3344556


Q ss_pred             CCcccEEEecCCCCcccccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEE
Q 036097          322 SPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLN  401 (481)
Q Consensus       322 ~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~  401 (481)
                      +++|+.|++++|. +..++...++|+.|.+.++.+.....     ..++|+.++++.+.     +..++..+++|+   .
T Consensus       180 ~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N~-----L~~lp~~l~~L~---~  245 (622)
T 3g06_A          180 PSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPA-----LPSGLKELIVSGNR-----LTSLPVLPSELK---E  245 (622)
T ss_dssp             CTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCC-----CCTTCCEEECCSSC-----CSCCCCCCTTCC---E
T ss_pred             CCCCcEEECCCCC-CCCCCCccchhhEEECcCCcccccCC-----CCCCCCEEEccCCc-----cCcCCCCCCcCc---E
Confidence            7899999999864 66666667899999999987775443     56889999997664     111234444444   4


Q ss_pred             EEEEeeceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097          402 LLSECGESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       402 L~i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                      |++++|....+|.        .+++|+.|+++.+.-.       .++..+.++|+|+.|.+
T Consensus       246 L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N~L~-------~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          246 LMVSGNRLTSLPM--------LPSGLLSLSVYRNQLT-------RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             EECCSSCCSCCCC--------CCTTCCEEECCSSCCC-------SCCGGGGGSCTTCEEEC
T ss_pred             EECCCCCCCcCCc--------ccccCcEEeCCCCCCC-------cCCHHHhhccccCEEEe
Confidence            9999886666663        3578999999887532       23455788999999999

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.42  E-value=1.3e-13  Score=133.28  Aligned_cols=225  Identities=14%  Similarity=0.102  Sum_probs=148.7

Q ss_pred             HHHHHHHHhC-CeeEEEEEEeecCCcccccCCcccCC--CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHH
Q 036097          127 DRCVCYAIES-TVKELELHTILRGDRLYHLPQMVVCS--ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQV  203 (481)
Q Consensus       127 ~~~~~~~~~~-~l~~L~L~~~~~~~~~~~l~~~~~~~--~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~  203 (481)
                      .+|-..+..+ .++.++++.+  ...    +..+...  ++++.|+++++.+...+. ....+++|++|+++++.+.+..
T Consensus        37 ~~W~~~~~~~~~~~~l~l~~~--~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~  109 (336)
T 2ast_B           37 KRWYRLASDESLWQTLDLTGK--NLH----PDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVST  109 (336)
T ss_dssp             HHHHHHHTCSTTSSEEECTTC--BCC----HHHHHHHHHTTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHH
T ss_pred             HHHHHHhcCchhheeeccccc--cCC----HHHHHhhhhccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHH
Confidence            3565555433 3777776654  111    2233344  889999999999866554 4567899999999999998777


Q ss_pred             HHHHhcCCCccceeEeeeecCcce--EeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcE
Q 036097          204 IENLVAGCPLIEDLIFEFCEGLKS--IKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKS  281 (481)
Q Consensus       204 l~~l~~~~p~Le~L~l~~~~~~~~--l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~  281 (481)
                      +...+..|++|++|++++|.--..  ..+..+++|+.|++++|..+...                 ..+..+..+++|++
T Consensus       110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-----------------~l~~~~~~~~~L~~  172 (336)
T 2ast_B          110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-----------------ALQTLLSSCSRLDE  172 (336)
T ss_dssp             HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----------------HHHHHHHHCTTCCE
T ss_pred             HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-----------------HHHHHHhcCCCCCE
Confidence            888899999999999998852211  12344677777777776311110                 01122344555555


Q ss_pred             EEEE----echhhhHHhhhcCC-cccEEEeccccccc-cc-----ccccccCCcccEEEecCCCCccc----ccccCCCc
Q 036097          282 LFLC----ITSVVDETLSYHIT-RLVVLECLGLIVCF-EL-----QNIKISSPSLKRLEIFKCTKLAA----VEIETPNL  346 (481)
Q Consensus       282 L~l~----~~~~~~~~~~~~~~-~L~~L~L~~~~~c~-~l-----~~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L  346 (481)
                      |+++    +++..+...+..++ +|+.|++++   |. .+     ......+++|+.|++++|..+.+    .....++|
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~---~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L  249 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSG---YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL  249 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCS---CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCC---CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence            5554    55555677788999 999999999   63 23     23334578999999999875443    22356899


Q ss_pred             ceeEecccc-cCCcchhhhhccCCCccEEEEeeC
Q 036097          347 SKCKYNGGV-VPFSSSTALKLLETDLNLYTINFD  379 (481)
Q Consensus       347 ~~L~~~~~~-~~~~~~~~l~~~~~~L~~l~l~~~  379 (481)
                      ++|.++++. +.......+. .+++|+.+++..+
T Consensus       250 ~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~  282 (336)
T 2ast_B          250 QHLSLSRCYDIIPETLLELG-EIPTLKTLQVFGI  282 (336)
T ss_dssp             CEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTS
T ss_pred             CEeeCCCCCCCCHHHHHHHh-cCCCCCEEeccCc
Confidence            999998873 3333222233 6888888888655

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.42  E-value=1e-13  Score=132.76  Aligned_cols=193  Identities=16%  Similarity=0.090  Sum_probs=100.4

Q ss_pred             CCeeEEEEEEeecCCc-ccccCCcccCCCCccEEEEcC-eeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097          136 STVKELELHTILRGDR-LYHLPQMVVCSETVNVLDLFG-CILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL  213 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~-~~~l~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  213 (481)
                      .++++|+++.+  ... ...+|..+..+++|++|+|++ +.+....+.....+++|++|+++++.+... +...+..+++
T Consensus        50 ~~l~~L~L~~~--~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGL--NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECC--CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTT
T ss_pred             ceEEEEECCCC--CccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCC
Confidence            46777777765  211 115677777778888888874 555444334556777888888877766421 1223556777


Q ss_pred             cceeEeeeecCcce--EeecCCCCCcEEEEccCCCCceEE---EecC-CccEEEEcCC--CCCCceeccCCCCCcEEEEE
Q 036097          214 IEDLIFEFCEGLKS--IKLFGRSKLRDIKIKGGREAEEVN---INAL-NGHSITVVSP--LPSGKINEVSCKNLKSLFLC  285 (481)
Q Consensus       214 Le~L~l~~~~~~~~--l~i~~~~~L~~L~l~~~~~~~~~~---~~~p-~L~~L~l~~~--~~~~~~~~~~~~~L~~L~l~  285 (481)
                      |++|++++|.-...  -.+..+++|+.|+++++.....+.   ...+ +|+.|+++++  .+..+..+..++ |+.|+++
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence            88887777642111  123445677777776664211111   1223 5666666655  222333344444 5555554


Q ss_pred             ---echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCC
Q 036097          286 ---ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCT  334 (481)
Q Consensus       286 ---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~  334 (481)
                         +++ .....+..+++|+.|++++|.+...... ....++|++|++++|.
T Consensus       206 ~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~  255 (313)
T 1ogq_A          206 RNMLEG-DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR  255 (313)
T ss_dssp             SSEEEE-CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSC
T ss_pred             CCcccC-cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCc
Confidence               221 1233445555666666655332211111 1223455555555543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.41  E-value=4.8e-13  Score=128.36  Aligned_cols=230  Identities=12%  Similarity=0.098  Sum_probs=132.6

Q ss_pred             CCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEE
Q 036097          162 SETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKI  241 (481)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l  241 (481)
                      +++|++|+|++|.+...++.....+++|++|+|++|.+.+.. .  +..+++|++|++++|. +..+  ...++|+.|++
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~--~~~l~~L~~L~Ls~n~-l~~l--~~~~~L~~L~l  106 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQEL--LVGPSIETLHA  106 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-E--ETTCTTCCEEECCSSE-EEEE--EECTTCCEEEC
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-h--hhhcCCCCEEECcCCc-cccc--cCCCCcCEEEC
Confidence            445666666666654443333445666666666666553311 0  4556666666666553 2222  12366666666


Q ss_pred             ccCCCCceEEEecCCccEEEEcCCC--CCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccc
Q 036097          242 KGGREAEEVNINALNGHSITVVSPL--PSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQ  316 (481)
Q Consensus       242 ~~~~~~~~~~~~~p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~  316 (481)
                      +++..........++|+.|+++++.  +..+..+..+++|+.|+++   ++......+...+++|+.|++++|.+-. +.
T Consensus       107 ~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~  185 (317)
T 3o53_A          107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VK  185 (317)
T ss_dssp             CSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EE
T ss_pred             CCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-cc
Confidence            6665332233345677777777762  2234456777888888876   4433334445678889999998843211 11


Q ss_pred             cccccCCcccEEEecCCCCcccc---cccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhc
Q 036097          317 NIKISSPSLKRLEIFKCTKLAAV---EIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKF  393 (481)
Q Consensus       317 ~l~~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l  393 (481)
                      . ....++|+.|++++|. +..+   ....++|+.|.++++.+.... ..+ ..+++|+.+++..+......+..++..+
T Consensus       186 ~-~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~-~~~-~~l~~L~~L~l~~N~~~~~~~~~~~~~~  261 (317)
T 3o53_A          186 G-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIE-KAL-RFSQNLEHFDLRGNGFHCGTLRDFFSKN  261 (317)
T ss_dssp             C-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEEC-TTC-CCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred             c-ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchh-hHh-hcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence            1 1236788999988864 3332   335688899988887665321 112 2678888888866653323444555555


Q ss_pred             ccceeeEEEEEE
Q 036097          394 HQWSKVLNLLSE  405 (481)
Q Consensus       394 ~~L~~l~~L~i~  405 (481)
                      +.++.   |.+.
T Consensus       262 ~~L~~---l~l~  270 (317)
T 3o53_A          262 QRVQT---VAKQ  270 (317)
T ss_dssp             HHHHH---HHHH
T ss_pred             ccceE---EECC
Confidence            55555   5554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.39  E-value=9.3e-13  Score=133.93  Aligned_cols=226  Identities=12%  Similarity=0.081  Sum_probs=147.2

Q ss_pred             CCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEE
Q 036097          162 SETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKI  241 (481)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l  241 (481)
                      +++|++|+|++|.+...++.....+++|++|+|++|.+.+...   +..+++|++|++++|. +..+.  ..++|+.|++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~-l~~l~--~~~~L~~L~L  106 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNY-VQELL--VGPSIETLHA  106 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSE-EEEEE--ECTTCCEEEC
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCc-CCCCC--CCCCcCEEEC
Confidence            4578888888888766655556678888888888887654111   6678888888888773 33322  2378888888


Q ss_pred             ccCCCCceEEEecCCccEEEEcCC--CCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccc
Q 036097          242 KGGREAEEVNINALNGHSITVVSP--LPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQ  316 (481)
Q Consensus       242 ~~~~~~~~~~~~~p~L~~L~l~~~--~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~  316 (481)
                      ++|..........++|+.|+++++  .+..+..+..+++|+.|+++   +++.....+...+++|+.|++++|.+.. +.
T Consensus       107 ~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~  185 (487)
T 3oja_A          107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VK  185 (487)
T ss_dssp             CSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EE
T ss_pred             cCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc-cc
Confidence            888633333345688899998888  33345577888999999887   4444444455578999999999844211 11


Q ss_pred             cccccCCcccEEEecCCCCcccc---cccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhc
Q 036097          317 NIKISSPSLKRLEIFKCTKLAAV---EIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKF  393 (481)
Q Consensus       317 ~l~~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l  393 (481)
                      . ...+++|+.|+++++. +..+   ....++|+.|.++++.+..... .+ ..+++|+.+++..+......+..++..+
T Consensus       186 ~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~l-~~l~~L~~L~l~~N~l~c~~~~~~~~~l  261 (487)
T 3oja_A          186 G-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEK-AL-RFSQNLEHFDLRGNGFHCGTLRDFFSKN  261 (487)
T ss_dssp             C-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECT-TC-CCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred             c-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccch-hh-ccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence            1 1236889999999865 3332   2356889999998876653221 11 2678888988866553323333444444


Q ss_pred             cccee
Q 036097          394 HQWSK  398 (481)
Q Consensus       394 ~~L~~  398 (481)
                      +.++.
T Consensus       262 ~~L~~  266 (487)
T 3oja_A          262 QRVQT  266 (487)
T ss_dssp             HHHHH
T ss_pred             CCCcE
Confidence            44443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.39  E-value=7.6e-13  Score=133.47  Aligned_cols=62  Identities=15%  Similarity=0.013  Sum_probs=27.1

Q ss_pred             cCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeee
Q 036097          160 VCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFC  222 (481)
Q Consensus       160 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~  222 (481)
                      ..+++|++|+|++|.+...++.....+++|++|+|++|.+.. .....+..+++|++|++++|
T Consensus        96 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N  157 (452)
T 3zyi_A           96 RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYLSKLRELWLRNN  157 (452)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSB-CCTTTSSSCTTCCEEECCSC
T ss_pred             CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCc-cChhhhcccCCCCEEECCCC
Confidence            344555555555554444333333444555555555544432 01111334445555555444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.38  E-value=1.5e-12  Score=126.94  Aligned_cols=238  Identities=12%  Similarity=0.045  Sum_probs=162.4

Q ss_pred             CCeeEEEEEEeecCCcccccCC-cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHLPQ-MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      +++++|+++.+    ....++. .+..+++|++|++++|.+...++.....+++|++|+++++.+.. .....+..+++|
T Consensus        52 ~~L~~L~l~~n----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L  126 (353)
T 2z80_A           52 EAVKSLDLSNN----RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSL  126 (353)
T ss_dssp             TTCCEEECTTS----CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTC
T ss_pred             ccCcEEECCCC----cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccC
Confidence            58999998876    3345555 56789999999999999877766567789999999999998864 222346789999


Q ss_pred             ceeEeeeecC--cce-EeecCCCCCcEEEEccCCCCceEE----EecCCccEEEEcCCC--CCCceeccCCCCCcEEEEE
Q 036097          215 EDLIFEFCEG--LKS-IKLFGRSKLRDIKIKGGREAEEVN----INALNGHSITVVSPL--PSGKINEVSCKNLKSLFLC  285 (481)
Q Consensus       215 e~L~l~~~~~--~~~-l~i~~~~~L~~L~l~~~~~~~~~~----~~~p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~  285 (481)
                      ++|++++|.-  +.. ..+..+++|+.|+++++.....+.    ..+++|+.|+++++.  +..+..+..+++|++|+++
T Consensus       127 ~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  206 (353)
T 2z80_A          127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH  206 (353)
T ss_dssp             SEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             CEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC
Confidence            9999998842  221 134567999999999985333332    256889999999882  2235678889999999998


Q ss_pred             e-c-hhhhHHhhhcCCcccEEEecccccccc-cccc--cccCCcccEEEecCCCCccc--------ccccCCCcceeEec
Q 036097          286 I-T-SVVDETLSYHITRLVVLECLGLIVCFE-LQNI--KISSPSLKRLEIFKCTKLAA--------VEIETPNLSKCKYN  352 (481)
Q Consensus       286 ~-~-~~~~~~~~~~~~~L~~L~L~~~~~c~~-l~~l--~~~~~~L~~L~l~~c~~l~~--------~~~~~p~L~~L~~~  352 (481)
                      - . ..........+++|+.|++++|.+... ...+  ....+.++.+++..+. +.+        .....++|+.|.++
T Consensus       207 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls  285 (353)
T 2z80_A          207 MKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQISGLLELEFS  285 (353)
T ss_dssp             CSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEEECC
T ss_pred             CCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc-ccCcchhhhHHHHhcccCCCEEECC
Confidence            1 1 122233456799999999999543211 1111  1124567778887754 221        22356889999998


Q ss_pred             ccccCCcchhhhhccCCCccEEEEeeCh
Q 036097          353 GGVVPFSSSTALKLLETDLNLYTINFDP  380 (481)
Q Consensus       353 ~~~~~~~~~~~l~~~~~~L~~l~l~~~~  380 (481)
                      ++.+.......+ ..+++|+.+++..+.
T Consensus       286 ~N~l~~i~~~~~-~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          286 RNQLKSVPDGIF-DRLTSLQKIWLHTNP  312 (353)
T ss_dssp             SSCCCCCCTTTT-TTCTTCCEEECCSSC
T ss_pred             CCCCCccCHHHH-hcCCCCCEEEeeCCC
Confidence            876653322111 267888888886554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.37  E-value=8.5e-13  Score=127.33  Aligned_cols=210  Identities=13%  Similarity=0.067  Sum_probs=103.8

Q ss_pred             CCeeEEEEEEeecCCcccccCC-cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHLPQ-MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      ++++.|+++.+    ....++. .+..+++|++|+|++|.+....+.....+++|++|+++++.+..  +.  ....++|
T Consensus        52 ~~l~~L~L~~n----~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~--~~~~~~L  123 (330)
T 1xku_A           52 PDTALLDLQNN----KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LP--EKMPKTL  123 (330)
T ss_dssp             TTCCEEECCSS----CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CC--SSCCTTC
T ss_pred             CCCeEEECCCC----cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cC--hhhcccc
Confidence            45666666654    2233433 44566777777777777665544455566777777777776542  10  0123567


Q ss_pred             ceeEeeeecCcce--EeecCCCCCcEEEEccCCCC-----ceEEEecCCccEEEEcCC-CCCCceeccCCCCCcEEEEE-
Q 036097          215 EDLIFEFCEGLKS--IKLFGRSKLRDIKIKGGREA-----EEVNINALNGHSITVVSP-LPSGKINEVSCKNLKSLFLC-  285 (481)
Q Consensus       215 e~L~l~~~~~~~~--l~i~~~~~L~~L~l~~~~~~-----~~~~~~~p~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~-  285 (481)
                      ++|++++|.--..  ..+..+++|+.|+++++..-     ......+++|+.|+++++ ....+..+  .++|+.|+++ 
T Consensus       124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~  201 (330)
T 1xku_A          124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDG  201 (330)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTT
T ss_pred             cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc--cccCCEEECCC
Confidence            7777766632111  12344566666666665411     001123456666666655 11111111  2556666554 


Q ss_pred             --echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcccc---cccCCCcceeEecccccC
Q 036097          286 --ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV---EIETPNLSKCKYNGGVVP  357 (481)
Q Consensus       286 --~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~---~~~~p~L~~L~~~~~~~~  357 (481)
                        ++. .....+..+++|+.|++++|.+..........+++|+.|++++|. +..+   ....++|+.|.++++.+.
T Consensus       202 n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          202 NKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             SCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred             CcCCc-cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCC
Confidence              111 112334556666666666632211111112234566666666653 2222   123455666666555444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.35  E-value=6.9e-13  Score=126.99  Aligned_cols=239  Identities=12%  Similarity=0.008  Sum_probs=158.7

Q ss_pred             eeEEEEEEEeeCChhhHHHHHHHHHhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcc
Q 036097          110 VEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSL  189 (481)
Q Consensus       110 l~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L  189 (481)
                      ++.+.+......+...+..  .....+++++|+++.+  ..-...+|..+..+++|++|+|++|.+....+.....+++|
T Consensus        52 l~~L~L~~~~l~~~~~~~~--~l~~l~~L~~L~L~~~--n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           52 VNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGI--NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             EEEEEEECCCCSSCEECCG--GGGGCTTCSEEEEEEE--TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             EEEEECCCCCccCCcccCh--hHhCCCCCCeeeCCCC--CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            7887777542221001111  1123478999999953  23445778888899999999999999874444466789999


Q ss_pred             eEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--eecCCC-CCcEEEEccCCCCceE--EEecCCccEEEEcC
Q 036097          190 RKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI--KLFGRS-KLRDIKIKGGREAEEV--NINALNGHSITVVS  264 (481)
Q Consensus       190 ~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l--~i~~~~-~L~~L~l~~~~~~~~~--~~~~p~L~~L~l~~  264 (481)
                      ++|+++++.+... +...+..+++|++|++++|.--..+  .+..++ +|+.|+++++......  .+...+|+.|++++
T Consensus       128 ~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~  206 (313)
T 1ogq_A          128 VTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCS
T ss_pred             CEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcC
Confidence            9999999987532 2223677999999999988632222  344555 9999999988511111  11122399999999


Q ss_pred             C--CCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcccc
Q 036097          265 P--LPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV  339 (481)
Q Consensus       265 ~--~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~  339 (481)
                      +  .+..+..+..+++|+.|+++   ++..  ...+..+++|+.|++++|.+...+......+++|+.|+++++.--..+
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  284 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFD--LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCB--GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeee--cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence            8  33456678899999999988   4322  122577899999999995543333343445789999999986522222


Q ss_pred             c--ccCCCcceeEecccc
Q 036097          340 E--IETPNLSKCKYNGGV  355 (481)
Q Consensus       340 ~--~~~p~L~~L~~~~~~  355 (481)
                      +  ...++|+.+.+.++.
T Consensus       285 p~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          285 PQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCSTTGGGSCGGGTCSSS
T ss_pred             CCCccccccChHHhcCCC
Confidence            2  234556666665543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.35  E-value=1.5e-12  Score=131.16  Aligned_cols=175  Identities=13%  Similarity=0.042  Sum_probs=86.0

Q ss_pred             CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEEc
Q 036097          163 ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIK  242 (481)
Q Consensus       163 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~  242 (481)
                      ++|++|++++|.+..++.    ..++|++|+++++.+..  +.. +..+++|++|++++|. +..+... .++|+.|+++
T Consensus       111 ~~L~~L~l~~n~l~~l~~----~~~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~-l~~lp~~-~~~L~~L~L~  181 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALSD----LPPLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNS-LKKLPDL-PPSLEFIAAG  181 (454)
T ss_dssp             TTCCEEECCSSCCSCCCS----CCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSC-CSCCCCC-CTTCCEEECC
T ss_pred             CCCcEEECCCCccCcccC----CCCCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCc-CcccCCC-cccccEEECc
Confidence            455555555554433221    11455555555555432  111 4455556666655553 2211111 1455566555


Q ss_pred             cCC--CCceEEEecCCccEEEEcCCCC-CCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccc
Q 036097          243 GGR--EAEEVNINALNGHSITVVSPLP-SGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQ  316 (481)
Q Consensus       243 ~~~--~~~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~  316 (481)
                      ++.  .+.. ...+++|+.|+++++.- ..+.   ..++|+.|+++   ++  .+.. +..+++|+.|++++|.    ++
T Consensus       182 ~n~l~~l~~-~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~n~l~--~lp~-~~~l~~L~~L~l~~N~----l~  250 (454)
T 1jl5_A          182 NNQLEELPE-LQNLPFLTAIYADNNSLKKLPD---LPLSLESIVAGNNILE--ELPE-LQNLPFLTTIYADNNL----LK  250 (454)
T ss_dssp             SSCCSSCCC-CTTCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCS--SCCC-CTTCTTCCEEECCSSC----CS
T ss_pred             CCcCCcCcc-ccCCCCCCEEECCCCcCCcCCC---CcCcccEEECcCCcCC--cccc-cCCCCCCCEEECCCCc----CC
Confidence            554  1111 12345556666555521 1111   12356666654   22  1222 4566777777777732    22


Q ss_pred             cccccCCcccEEEecCCCCcccccccCCCcceeEecccccCC
Q 036097          317 NIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNGGVVPF  358 (481)
Q Consensus       317 ~l~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~~~~~~  358 (481)
                      .++...++|+.|++++|. +..++...++|+.|.++++.+..
T Consensus       251 ~l~~~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N~l~~  291 (454)
T 1jl5_A          251 TLPDLPPSLEALNVRDNY-LTDLPELPQSLTFLDVSENIFSG  291 (454)
T ss_dssp             SCCSCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSE
T ss_pred             cccccccccCEEECCCCc-ccccCcccCcCCEEECcCCccCc
Confidence            233334677778877754 44454455778888887765543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.35  E-value=1.5e-12  Score=130.90  Aligned_cols=217  Identities=12%  Similarity=0.051  Sum_probs=107.5

Q ss_pred             ccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE---
Q 036097          152 LYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI---  228 (481)
Q Consensus       152 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l---  228 (481)
                      ...+|..+.  ++++.|+|++|.+...+......+++|++|+|+++.+..-. ...+..+++|++|++++|. +..+   
T Consensus        55 l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~~~  130 (440)
T 3zyj_A           55 LREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNR-LTTIPNG  130 (440)
T ss_dssp             CSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSC-CSSCCTT
T ss_pred             cCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCc-CCeeCHh
Confidence            334444332  45666666666665554444555666666666666554311 1124456666666666552 2221   


Q ss_pred             eecCCCCCcEEEEccCCCCceE----EEecCCccEEEEcCCC--CC-CceeccCCCCCcEEEEE---echhhhHHhhhcC
Q 036097          229 KLFGRSKLRDIKIKGGREAEEV----NINALNGHSITVVSPL--PS-GKINEVSCKNLKSLFLC---ITSVVDETLSYHI  298 (481)
Q Consensus       229 ~i~~~~~L~~L~l~~~~~~~~~----~~~~p~L~~L~l~~~~--~~-~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~  298 (481)
                      .+..+++|+.|+++++.. ..+    ...+++|+.|+++++.  .. ....+..+++|+.|+++   ++  .+. .+..+
T Consensus       131 ~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~--~~~-~~~~l  206 (440)
T 3zyj_A          131 AFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR--EIP-NLTPL  206 (440)
T ss_dssp             TSCSCSSCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS--SCC-CCTTC
T ss_pred             HhhccccCceeeCCCCcc-cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc--ccc-ccCCC
Confidence            133446666666665541 111    1234566666666541  11 12235566666666655   21  111 23556


Q ss_pred             CcccEEEecccccccccccccccCCcccEEEecCCCCcccc----cccCCCcceeEecccccCCcchhhhhccCCCccEE
Q 036097          299 TRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV----EIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLY  374 (481)
Q Consensus       299 ~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l  374 (481)
                      ++|+.|+|++|.+..........+++|+.|+++++. +..+    ....++|+.|.++++.+.......+. .+++|+.+
T Consensus       207 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L  284 (440)
T 3zyj_A          207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT-PLHHLERI  284 (440)
T ss_dssp             SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS-SCTTCCEE
T ss_pred             cccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCCCCCccChhHhc-cccCCCEE
Confidence            667777777632211111222234667777776643 3222    23456677777776655433322222 56677777


Q ss_pred             EEee
Q 036097          375 TINF  378 (481)
Q Consensus       375 ~l~~  378 (481)
                      ++..
T Consensus       285 ~L~~  288 (440)
T 3zyj_A          285 HLHH  288 (440)
T ss_dssp             ECCS
T ss_pred             EcCC
Confidence            7643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.33  E-value=1.8e-12  Score=130.34  Aligned_cols=214  Identities=13%  Similarity=0.043  Sum_probs=155.6

Q ss_pred             CCeeEEEEEEeecCCcccccC-CcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHLP-QMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      ++++.|+|+.+    ....++ ..+..+++|++|+|++|.+..++......+++|++|+|++|.+..- ....+..+++|
T Consensus        64 ~~l~~L~L~~n----~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L  138 (440)
T 3zyj_A           64 TNTRLLNLHEN----QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKL  138 (440)
T ss_dssp             TTCSEEECCSC----CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSC
T ss_pred             CCCcEEEccCC----cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccC
Confidence            67899998876    233333 4566799999999999998777655677899999999999987541 12236789999


Q ss_pred             ceeEeeeecCcceE---eecCCCCCcEEEEccCCCCceEE----EecCCccEEEEcCCCCCCceeccCCCCCcEEEEE--
Q 036097          215 EDLIFEFCEGLKSI---KLFGRSKLRDIKIKGGREAEEVN----INALNGHSITVVSPLPSGKINEVSCKNLKSLFLC--  285 (481)
Q Consensus       215 e~L~l~~~~~~~~l---~i~~~~~L~~L~l~~~~~~~~~~----~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~--  285 (481)
                      ++|++++|. +..+   .+..+++|+.|+++++..+..+.    ..+++|+.|+++++.-.....+..+++|+.|+++  
T Consensus       139 ~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          139 KELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN  217 (440)
T ss_dssp             CEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS
T ss_pred             ceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCC
Confidence            999999885 3333   24557999999999877554443    2578999999999843333468899999999987  


Q ss_pred             -echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcccc----cccCCCcceeEecccccC
Q 036097          286 -ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV----EIETPNLSKCKYNGGVVP  357 (481)
Q Consensus       286 -~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~L~~~~~~~~  357 (481)
                       ++. .....+.++++|+.|++++|.+..........+++|+.|+++++. +..+    ....++|+.|.++++...
T Consensus       218 ~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          218 HLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ccCc-cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCCcc
Confidence             222 223456789999999999954322222223346899999999964 4443    345689999999887653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.32  E-value=2.1e-12  Score=130.25  Aligned_cols=220  Identities=16%  Similarity=0.026  Sum_probs=155.5

Q ss_pred             cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI--  228 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l--  228 (481)
                      ....+|..+.  +++++|+|++|.+...++.....+++|++|+|+++.+..-. ...+..+++|++|++++|. +..+  
T Consensus        65 ~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~  140 (452)
T 3zyi_A           65 GLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNW-LTVIPS  140 (452)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CSBCCT
T ss_pred             CcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCc-CCccCh
Confidence            4456665443  68999999999998776667788999999999999886421 1236789999999999885 3222  


Q ss_pred             -eecCCCCCcEEEEccCCCCceE----EEecCCccEEEEcCCCC--C-CceeccCCCCCcEEEEE---echhhhHHhhhc
Q 036097          229 -KLFGRSKLRDIKIKGGREAEEV----NINALNGHSITVVSPLP--S-GKINEVSCKNLKSLFLC---ITSVVDETLSYH  297 (481)
Q Consensus       229 -~i~~~~~L~~L~l~~~~~~~~~----~~~~p~L~~L~l~~~~~--~-~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~  297 (481)
                       .+..+++|+.|+++++.. ..+    ...+++|+.|+++++..  . ....+..+++|+.|+++   ++.  + ..+..
T Consensus       141 ~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~-~~~~~  216 (452)
T 3zyi_A          141 GAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--M-PNLTP  216 (452)
T ss_dssp             TTSSSCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--C-CCCTT
T ss_pred             hhhcccCCCCEEECCCCCc-ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--c-ccccc
Confidence             244579999999999862 222    23578999999998622  2 22357889999999987   322  1 23567


Q ss_pred             CCcccEEEecccccccccccccccCCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchhhhhccCCCccE
Q 036097          298 ITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNL  373 (481)
Q Consensus       298 ~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~  373 (481)
                      +++|+.|++++|.+..........+++|+.|+++++. +..    .....++|+.|.++++.+.......+ ..+++|+.
T Consensus       217 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~  294 (452)
T 3zyi_A          217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLSSLPHDLF-TPLRYLVE  294 (452)
T ss_dssp             CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTSS-TTCTTCCE
T ss_pred             cccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCcCCccChHHh-ccccCCCE
Confidence            8999999999954322222333456899999999865 333    23456899999999987764433222 26789999


Q ss_pred             EEEeeCh
Q 036097          374 YTINFDP  380 (481)
Q Consensus       374 l~l~~~~  380 (481)
                      +++..+.
T Consensus       295 L~L~~Np  301 (452)
T 3zyi_A          295 LHLHHNP  301 (452)
T ss_dssp             EECCSSC
T ss_pred             EEccCCC
Confidence            9985543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.31  E-value=1.4e-12  Score=125.02  Aligned_cols=233  Identities=14%  Similarity=0.090  Sum_probs=137.4

Q ss_pred             cCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEc
Q 036097          184 VKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVV  263 (481)
Q Consensus       184 ~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~  263 (481)
                      ..+++|++|+|+++.+.+-. ...+..+++|++|++++|.-.....+..+++|+.|++++|. +..+. ..++|+.|+++
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~-l~~l~-~~~~L~~L~l~  107 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQIS-AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY-VQELL-VGPSIETLHAA  107 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCC-HHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSE-EEEEE-ECTTCCEEECC
T ss_pred             ccCCCCCEEECcCCccCcCC-HHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCc-ccccc-CCCCcCEEECC
Confidence            35679999999999886532 23367899999999998864444457778999999999884 22222 34889999988


Q ss_pred             CCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccc-cccccccCCcccEEEecCCCCcccc
Q 036097          264 SPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFE-LQNIKISSPSLKRLEIFKCTKLAAV  339 (481)
Q Consensus       264 ~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~-l~~l~~~~~~L~~L~l~~c~~l~~~  339 (481)
                      ++.-.. .....+++|+.|+++   ++. .....+..+++|+.|++++|.+... ...+...+++|+.|++++|. +..+
T Consensus       108 ~n~l~~-~~~~~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~  184 (317)
T 3o53_A          108 NNNISR-VSCSRGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDV  184 (317)
T ss_dssp             SSCCSE-EEECCCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEE
T ss_pred             CCccCC-cCccccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccc
Confidence            873221 122346667777765   221 1112334566777777776322111 11112234566666666643 2221


Q ss_pred             c--ccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhh
Q 036097          340 E--IETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELR  417 (481)
Q Consensus       340 ~--~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~  417 (481)
                      .  ...++|+.|.++++.+....                              ..+..+.+|+.|+++.+....+|+.  
T Consensus       185 ~~~~~l~~L~~L~Ls~N~l~~l~------------------------------~~~~~l~~L~~L~L~~N~l~~l~~~--  232 (317)
T 3o53_A          185 KGQVVFAKLKTLDLSSNKLAFMG------------------------------PEFQSAAGVTWISLRNNKLVLIEKA--  232 (317)
T ss_dssp             ECCCCCTTCCEEECCSSCCCEEC------------------------------GGGGGGTTCSEEECTTSCCCEECTT--
T ss_pred             ccccccccCCEEECCCCcCCcch------------------------------hhhcccCcccEEECcCCcccchhhH--
Confidence            1  12445555555544333211                              1233344444488887766666654  


Q ss_pred             ccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097          418 QILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       418 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                         +..+++|+.|+++.+.-..     ..++.++..+|+|+.|.+
T Consensus       233 ---~~~l~~L~~L~l~~N~~~~-----~~~~~~~~~~~~L~~l~l  269 (317)
T 3o53_A          233 ---LRFSQNLEHFDLRGNGFHC-----GTLRDFFSKNQRVQTVAK  269 (317)
T ss_dssp             ---CCCCTTCCEEECTTCCCBH-----HHHHHHHHTCHHHHHHHH
T ss_pred             ---hhcCCCCCEEEccCCCccC-----cCHHHHHhccccceEEEC
Confidence               5667889999998776432     234556666777776655

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.30  E-value=5e-12  Score=119.24  Aligned_cols=112  Identities=14%  Similarity=0.114  Sum_probs=70.1

Q ss_pred             cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI--  228 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l--  228 (481)
                      ....+|..+  .++|++|+++++.+...+......+++|++|+++++.+.+-. ...+..+++|++|++++|..+..+  
T Consensus        22 ~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~   98 (285)
T 1ozn_A           22 GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDP   98 (285)
T ss_dssp             CCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred             CcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCH
Confidence            344555433  468899999998887776556677889999999888775421 123567888999998887544433  


Q ss_pred             -eecCCCCCcEEEEccCCCC---ceEEEecCCccEEEEcCC
Q 036097          229 -KLFGRSKLRDIKIKGGREA---EEVNINALNGHSITVVSP  265 (481)
Q Consensus       229 -~i~~~~~L~~L~l~~~~~~---~~~~~~~p~L~~L~l~~~  265 (481)
                       .+..+++|+.|+++++...   ......+++|++|+++++
T Consensus        99 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  139 (285)
T 1ozn_A           99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN  139 (285)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC
Confidence             2344567777777666411   111123455555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.29  E-value=1.8e-12  Score=125.20  Aligned_cols=274  Identities=14%  Similarity=0.013  Sum_probs=158.8

Q ss_pred             CeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccce
Q 036097          137 TVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIED  216 (481)
Q Consensus       137 ~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  216 (481)
                      .++.++++.+    ....+|..+  .++|++|++++|.+...++.....+++|++|+++++.+..-. ...+..+++|++
T Consensus        34 ~l~~l~~~~~----~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  106 (332)
T 2ft3_A           34 HLRVVQCSDL----GLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQK  106 (332)
T ss_dssp             ETTEEECCSS----CCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCE
T ss_pred             cCCEEECCCC----CccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC-HhHhhCcCCCCE
Confidence            4566665543    344666654  367888999888887666556677888899988888775421 223567888899


Q ss_pred             eEeeeecCcceEeecCCCCCcEEEEccCCC--C-ceEEEecCCccEEEEcCCCC----CCceeccCCCCCcEEEEE---e
Q 036097          217 LIFEFCEGLKSIKLFGRSKLRDIKIKGGRE--A-EEVNINALNGHSITVVSPLP----SGKINEVSCKNLKSLFLC---I  286 (481)
Q Consensus       217 L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~--~-~~~~~~~p~L~~L~l~~~~~----~~~~~~~~~~~L~~L~l~---~  286 (481)
                      |++++|. +..+.....++|+.|+++++..  . ......+++|+.|+++++.-    ..+..+..+ +|+.|+++   +
T Consensus       107 L~L~~n~-l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l  184 (332)
T 2ft3_A          107 LYISKNH-LVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL  184 (332)
T ss_dssp             EECCSSC-CCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred             EECCCCc-CCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence            9888774 2232222237888888888761  1 11223578888888888722    233344555 77777765   2


Q ss_pred             chhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchh
Q 036097          287 TSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSST  362 (481)
Q Consensus       287 ~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~  362 (481)
                      +.  +..  ...++|+.|++++|.+..........+++|+.|+++++. +..    .....++|+.|.++++.+... ..
T Consensus       185 ~~--l~~--~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~  258 (332)
T 2ft3_A          185 TG--IPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNKLSRV-PA  258 (332)
T ss_dssp             SS--CCS--SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSSCCCBC-CT
T ss_pred             Cc--cCc--cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCCcCeec-Ch
Confidence            21  111  112678888888743322111222345778888888754 332    223567888888887665522 11


Q ss_pred             hhhccCCCccEEEEeeChhhHHHHHHH-Hhhccc------ceeeEEEEEEeecee--eechhhhccCCCCCCCCceEEEE
Q 036097          363 ALKLLETDLNLYTINFDPQWYVKFIEL-IAKFHQ------WSKVLNLLSECGESV--IVPKELRQILPPPLSGVKHLNFS  433 (481)
Q Consensus       363 ~l~~~~~~L~~l~l~~~~~~~~~~~~~-~~~l~~------L~~l~~L~i~~~~~~--~~~~~~~~~~~~~l~~L~~L~l~  433 (481)
                      .+ ..+++|+.+++..+.-.     .+ ...+..      ...+..|.+.++...  .+++    ..+..+.+|+.++++
T Consensus       259 ~l-~~l~~L~~L~l~~N~l~-----~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~----~~~~~l~~L~~l~l~  328 (332)
T 2ft3_A          259 GL-PDLKLLQVVYLHTNNIT-----KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP----ATFRCVTDRLAIQFG  328 (332)
T ss_dssp             TG-GGCTTCCEEECCSSCCC-----BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG----GGGTTBCCSTTEEC-
T ss_pred             hh-hcCccCCEEECCCCCCC-----ccChhHccccccccccccccceEeecCcccccccCc----ccccccchhhhhhcc
Confidence            12 26788888888654310     01 011111      223344888876533  2221    225557888888887


Q ss_pred             ec
Q 036097          434 IS  435 (481)
Q Consensus       434 ~~  435 (481)
                      .+
T Consensus       329 ~n  330 (332)
T 2ft3_A          329 NY  330 (332)
T ss_dssp             --
T ss_pred             cc
Confidence            65

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.27  E-value=1.5e-11  Score=117.20  Aligned_cols=232  Identities=13%  Similarity=0.025  Sum_probs=131.1

Q ss_pred             cEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcce----EeecCCCCCcEEEE
Q 036097          166 NVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKS----IKLFGRSKLRDIKI  241 (481)
Q Consensus       166 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~----l~i~~~~~L~~L~l  241 (481)
                      +.++.+++.+..+|.   .-.++|++|+++++.+.+ .....+..+++|++|++++|.--..    ..+..+++|+.|++
T Consensus        10 ~~l~c~~~~l~~ip~---~~~~~l~~L~L~~n~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLTSVPT---GIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCSSCCS---CCCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcccCCC---CCCCCCCEEECCCCccCc-cCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            467777777766653   223689999999998763 2223467899999999998852211    12334689999999


Q ss_pred             ccCC--CCceEEEecCCccEEEEcCCC-CC--CceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccccccc
Q 036097          242 KGGR--EAEEVNINALNGHSITVVSPL-PS--GKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCF  313 (481)
Q Consensus       242 ~~~~--~~~~~~~~~p~L~~L~l~~~~-~~--~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~  313 (481)
                      +++.  .+......+++|++|+++++. ..  ....+..+++|+.|+++   +. ......+..+++|+.|++++|....
T Consensus        86 s~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           86 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             CSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEECCCCcccc
Confidence            8886  222223467788888888761 11  11346667777777765   11 1223344566777777777632211


Q ss_pred             -ccccccccCCcccEEEecCCCCcccc----cccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHH
Q 036097          314 -ELQNIKISSPSLKRLEIFKCTKLAAV----EIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIE  388 (481)
Q Consensus       314 -~l~~l~~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~  388 (481)
                       .+......+++|+.|++++|. +..+    ....++|+.|.++++.+.....                           
T Consensus       165 ~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------------------  216 (306)
T 2z66_A          165 NFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFFSLDT---------------------------  216 (306)
T ss_dssp             GEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCSBCCS---------------------------
T ss_pred             ccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCCccCccCh---------------------------
Confidence             112222334566666666653 2221    1234555555555544332211                           


Q ss_pred             HHhhcccceeeEEEEEEeeceeeechhhhccCCCCC-CCCceEEEEecc
Q 036097          389 LIAKFHQWSKVLNLLSECGESVIVPKELRQILPPPL-SGVKHLNFSISI  436 (481)
Q Consensus       389 ~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~  436 (481)
                        ..+..+.+|+.|+++.+.....+..    .+..+ ++|++|+++.+.
T Consensus       217 --~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          217 --FPYKCLNSLQVLDYSLNHIMTSKKQ----ELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             --GGGTTCTTCCEEECTTSCCCBCSSS----SCCCCCTTCCEEECTTCC
T ss_pred             --hhccCcccCCEeECCCCCCcccCHH----HHHhhhccCCEEEccCCC
Confidence              1123333444477776654332211    13344 489999998764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.25  E-value=2.8e-12  Score=120.97  Aligned_cols=197  Identities=16%  Similarity=0.075  Sum_probs=115.9

Q ss_pred             hCCeeEEEEEEeecCCcccccCC-cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEeccee-cChHHHHHHhcCCC
Q 036097          135 ESTVKELELHTILRGDRLYHLPQ-MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVR-ASDQVIENLVAGCP  212 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~p  212 (481)
                      .+++++|+++.+    ....++. .+..+++|++|++++|.+....+.....+++|++|+++++. +..- ....+..++
T Consensus        31 ~~~l~~L~l~~n----~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~  105 (285)
T 1ozn_A           31 PAASQRIFLHGN----RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLG  105 (285)
T ss_dssp             CTTCSEEECTTS----CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCT
T ss_pred             CCCceEEEeeCC----cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCc
Confidence            357888888775    3334443 45678999999999998877655567788999999999986 5431 122366789


Q ss_pred             ccceeEeeeecCcce--EeecCCCCCcEEEEccCCCC--c-eEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEEec
Q 036097          213 LIEDLIFEFCEGLKS--IKLFGRSKLRDIKIKGGREA--E-EVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCIT  287 (481)
Q Consensus       213 ~Le~L~l~~~~~~~~--l~i~~~~~L~~L~l~~~~~~--~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  287 (481)
                      +|++|++++|.--..  -.+..+++|+.|+++++..-  . .....+++|+.|+++++.-..                  
T Consensus       106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------------  167 (285)
T 1ozn_A          106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS------------------  167 (285)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE------------------
T ss_pred             CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc------------------
Confidence            999999998852211  12455799999999988511  1 111235666666666652110                  


Q ss_pred             hhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCcccc----cccCCCcceeEecccccC
Q 036097          288 SVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV----EIETPNLSKCKYNGGVVP  357 (481)
Q Consensus       288 ~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~L~~~~~~~~  357 (481)
                        .....+..+++|+.|++++|.+..........+++|+.|+++++. +..+    ....++|+.|.++++.+.
T Consensus       168 --~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          168 --VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             --ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             --cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCCcc
Confidence              011123345555555555532211111111224556666666543 2221    234566777777665443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.22  E-value=9.2e-12  Score=130.79  Aligned_cols=83  Identities=14%  Similarity=0.052  Sum_probs=53.8

Q ss_pred             CCeeEEEEEEeecCCcccccCCc-ccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHLPQM-VVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      +++++|+|+.+    ....+|.. +.++++|++|+|++|.+..+++.....+++|++|++++|.+....+...+..++.|
T Consensus       100 ~~L~~L~Ls~N----~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L  175 (635)
T 4g8a_A          100 SHLSTLILTGN----PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL  175 (635)
T ss_dssp             TTCCEEECTTC----CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred             CCCCEEEccCC----cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhh
Confidence            56777777665    33455543 34577777777777777666654556777788888877766442233345667777


Q ss_pred             ceeEeeee
Q 036097          215 EDLIFEFC  222 (481)
Q Consensus       215 e~L~l~~~  222 (481)
                      ++|++++|
T Consensus       176 ~~L~L~~N  183 (635)
T 4g8a_A          176 EHLDLSSN  183 (635)
T ss_dssp             CEEECCSS
T ss_pred             hhhcccCc
Confidence            77777765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.21  E-value=1.7e-12  Score=128.10  Aligned_cols=88  Identities=14%  Similarity=0.175  Sum_probs=40.8

Q ss_pred             CCeeEEEEEEee-cCCcccccCCcccCCCCccEEEEcCeeccCCCCC---C-------CcCCCcceEEEecceecChH--
Q 036097          136 STVKELELHTIL-RGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGR---N-------SVKLPSLRKLRLAQVRASDQ--  202 (481)
Q Consensus       136 ~~l~~L~L~~~~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~---~-------~~~~~~L~~L~L~~~~~~~~--  202 (481)
                      +++++|+++.+. .......++..+..+++|++|+|++|.+..+...   .       ...+++|++|+|++|.+.+.  
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            456666655431 0001111333344556666666666543222110   0       13455666666666655442  


Q ss_pred             -HHHHHhcCCCccceeEeeeec
Q 036097          203 -VIENLVAGCPLIEDLIFEFCE  223 (481)
Q Consensus       203 -~l~~l~~~~p~Le~L~l~~~~  223 (481)
                       .+...+..+++|++|++++|.
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSC
T ss_pred             HHHHHHHHhCCCCCEEECcCCC
Confidence             233344556666666666553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.21  E-value=1.3e-11  Score=125.50  Aligned_cols=204  Identities=17%  Similarity=0.114  Sum_probs=145.1

Q ss_pred             CCeeEEEEEEeecCCcccccC-CcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHLP-QMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      ++++.|+|+.+    ....++ ..+..+++|++|+|++|.+...++  ...+++|++|+|++|.+.+      +...++|
T Consensus        34 ~~L~~L~Ls~n----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~------l~~~~~L  101 (487)
T 3oja_A           34 WNVKELDLSGN----PLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE------LLVGPSI  101 (487)
T ss_dssp             GGCCEEECCSS----CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE------EEECTTC
T ss_pred             CCccEEEeeCC----cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC------CCCCCCc
Confidence            48999999886    223343 466789999999999998865543  6688999999999998754      2245899


Q ss_pred             ceeEeeeecCcceEeecCCCCCcEEEEccCC--CCce-EEEecCCccEEEEcCCCC--CCceecc-CCCCCcEEEEE---
Q 036097          215 EDLIFEFCEGLKSIKLFGRSKLRDIKIKGGR--EAEE-VNINALNGHSITVVSPLP--SGKINEV-SCKNLKSLFLC---  285 (481)
Q Consensus       215 e~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~--~~~~-~~~~~p~L~~L~l~~~~~--~~~~~~~-~~~~L~~L~l~---  285 (481)
                      ++|++++|. +..+....+++|+.|++++|.  .... ....+++|+.|+++++.-  ..+..+. .+++|+.|+++   
T Consensus       102 ~~L~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          102 ETLHAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             CEEECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             CEEECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            999999885 334444456999999999987  2211 223578999999999832  2333444 78999999987   


Q ss_pred             echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCCCccccc---ccCCCcceeEecccccC
Q 036097          286 ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAVE---IETPNLSKCKYNGGVVP  357 (481)
Q Consensus       286 ~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~---~~~p~L~~L~~~~~~~~  357 (481)
                      +++.   .....+++|+.|++++|.+...... ...+++|+.|+++++. +..++   ...++|+.|.++++.+.
T Consensus       181 l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          181 IYDV---KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCEE---ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             cccc---cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCc
Confidence            3222   1123589999999999554321112 2346899999999965 44333   34588999999998776

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.21  E-value=2.4e-12  Score=123.12  Aligned_cols=199  Identities=14%  Similarity=0.001  Sum_probs=95.0

Q ss_pred             CCCCccEEEEcCeeccCCCCCCC--cCCCcceEEEecceecCh--HHHHHHhc-CCCccceeEeeeecCcce--EeecCC
Q 036097          161 CSETVNVLDLFGCILLEFPGRNS--VKLPSLRKLRLAQVRASD--QVIENLVA-GCPLIEDLIFEFCEGLKS--IKLFGR  233 (481)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~--~~l~~l~~-~~p~Le~L~l~~~~~~~~--l~i~~~  233 (481)
                      .+++|++|+|++|.+....+...  ..+++|++|+|+++.+.+  ..+..+.. ..++|++|++++|.-...  -.+..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            56778888888877764332232  567778888888777654  22222211 137777777777642111  123334


Q ss_pred             CCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---ech--hhhHHhhhcCCcccEEEecc
Q 036097          234 SKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITS--VVDETLSYHITRLVVLECLG  308 (481)
Q Consensus       234 ~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~--~~~~~~~~~~~~L~~L~L~~  308 (481)
                      ++|+.|+++++........               .....+..+++|++|+++   ++.  .....++..+++|+.|++++
T Consensus       173 ~~L~~L~Ls~N~l~~~~~~---------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~  237 (312)
T 1wwl_A          173 PALSTLDLSDNPELGERGL---------------ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH  237 (312)
T ss_dssp             SSCCEEECCSCTTCHHHHH---------------HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTT
T ss_pred             CCCCEEECCCCCcCcchHH---------------HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCC
Confidence            5555555555531110000               000011334444444443   221  11223344566666666666


Q ss_pred             cccccccc-cccccCCcccEEEecCCCCcccccccC-CCcceeEecccccCCcchhhhhccCCCccEEEEee
Q 036097          309 LIVCFELQ-NIKISSPSLKRLEIFKCTKLAAVEIET-PNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINF  378 (481)
Q Consensus       309 ~~~c~~l~-~l~~~~~~L~~L~l~~c~~l~~~~~~~-p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~  378 (481)
                      |.+..... ......++|+.|++++|. +..++... ++|+.|.++++.+.....  + ..+++|+.+++..
T Consensus       238 N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~l~~~p~--~-~~l~~L~~L~L~~  305 (312)
T 1wwl_A          238 NSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNRLDRNPS--P-DELPQVGNLSLKG  305 (312)
T ss_dssp             SCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSCCCSCCC--T-TTSCEEEEEECTT
T ss_pred             CcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCCCCCCChh--H-hhCCCCCEEeccC
Confidence            43222110 111123566666666643 33332222 466666666655543211  1 2556666666543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.20  E-value=3.2e-11  Score=114.99  Aligned_cols=160  Identities=13%  Similarity=0.080  Sum_probs=95.9

Q ss_pred             hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      .+++++|++..+    ....++ .+..+++|++|++++|.+.+.+.  ...+++|++|+++++.+.+-  . .+..+++|
T Consensus        40 l~~L~~L~l~~~----~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L  109 (308)
T 1h6u_A           40 LDGITTLSAFGT----GVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--S-AIAGLQSI  109 (308)
T ss_dssp             HHTCCEEECTTS----CCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--G-GGTTCTTC
T ss_pred             cCCcCEEEeeCC----CccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--h-hhcCCCCC
Confidence            357888887665    233454 45678889999999888866653  66788888998888877552  1 26678888


Q ss_pred             ceeEeeeecCcceEeecCCCCCcEEEEccCC--CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echh
Q 036097          215 EDLIFEFCEGLKSIKLFGRSKLRDIKIKGGR--EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSV  289 (481)
Q Consensus       215 e~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~  289 (481)
                      ++|++++|.--....+..+++|+.|++++|.  .... ...+++|+.|+++++.-.....+..+++|+.|+++   +++-
T Consensus       110 ~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~  188 (308)
T 1h6u_A          110 KTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI  188 (308)
T ss_dssp             CEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             CEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcC
Confidence            8888887742111124556777777777765  1111 12446666666666521111115555555555554   2111


Q ss_pred             hhHHhhhcCCcccEEEecc
Q 036097          290 VDETLSYHITRLVVLECLG  308 (481)
Q Consensus       290 ~~~~~~~~~~~L~~L~L~~  308 (481)
                        .. +..+++|+.|++++
T Consensus       189 --~~-l~~l~~L~~L~L~~  204 (308)
T 1h6u_A          189 --SP-LASLPNLIEVHLKN  204 (308)
T ss_dssp             --GG-GGGCTTCCEEECTT
T ss_pred             --hh-hcCCCCCCEEEccC
Confidence              11 34555555555555

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.19  E-value=2.1e-11  Score=113.99  Aligned_cols=180  Identities=17%  Similarity=0.090  Sum_probs=94.3

Q ss_pred             ccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE---
Q 036097          152 LYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI---  228 (481)
Q Consensus       152 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l---  228 (481)
                      ...+|..+.  +++++|+|+++.+...+......+++|++|+++++.+.. ....++..+++|++|++++|. +..+   
T Consensus        28 l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~-l~~~~~~  103 (270)
T 2o6q_A           28 LTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK-LQALPIG  103 (270)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCEEECCSSC-CCCCCTT
T ss_pred             CCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCEEECCCCc-CCcCCHh
Confidence            344555433  568888888888776665556677888888888876643 112234567788888887764 2222   


Q ss_pred             eecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEE
Q 036097          229 KLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLE  305 (481)
Q Consensus       229 ~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~  305 (481)
                      .+..+++|+.|+++++..                   .......+..+++|++|+++   ++. .....+..+++|+.|+
T Consensus       104 ~~~~l~~L~~L~l~~n~l-------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~  163 (270)
T 2o6q_A          104 VFDQLVNLAELRLDRNQL-------------------KSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELR  163 (270)
T ss_dssp             TTTTCSSCCEEECCSSCC-------------------CCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEE
T ss_pred             HcccccCCCEEECCCCcc-------------------CeeCHHHhCcCcCCCEEECCCCcCCc-cCHhHccCCcccceeE
Confidence            122345555555555431                   01111223444555555544   111 1112245566666666


Q ss_pred             ecccccccccccccccCCcccEEEecCCCCcccc----cccCCCcceeEeccccc
Q 036097          306 CLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV----EIETPNLSKCKYNGGVV  356 (481)
Q Consensus       306 L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~L~~~~~~~  356 (481)
                      +++|.+..........+++|+.|+++++. +..+    ....++|+.|.+.++..
T Consensus       164 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ecCCcCcEeChhHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCCe
Confidence            66632211111111224566777776653 3322    22356777777777554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.18  E-value=7.4e-11  Score=112.49  Aligned_cols=161  Identities=14%  Similarity=0.136  Sum_probs=100.4

Q ss_pred             CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE-eecCCCCCcEE
Q 036097          161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-KLFGRSKLRDI  239 (481)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-~i~~~~~L~~L  239 (481)
                      .+++|++|++++|.+...+  ....+++|++|+++++.+.+-..   +..+++|++|++++|. +..+ .+..+++|+.|
T Consensus        39 ~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L  112 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNP-LKNVSAIAGLQSIKTL  112 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEE
T ss_pred             HcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCc-CCCchhhcCCCCCCEE
Confidence            5689999999999887664  46679999999999998865221   7789999999999885 2222 34556888888


Q ss_pred             EEccCC--CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccc
Q 036097          240 KIKGGR--EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFE  314 (481)
Q Consensus       240 ~l~~~~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~  314 (481)
                      ++++|.  .+.. ...+++|+.|+++++.-.....+..+++|+.|+++   +++  +.. +..+++|+.|++++|.+. .
T Consensus       113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~-~  187 (308)
T 1h6u_A          113 DLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD--LTP-LANLSKLTTLKADDNKIS-D  187 (308)
T ss_dssp             ECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCC-C
T ss_pred             ECCCCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC--Chh-hcCCCCCCEEECCCCccC-c
Confidence            888775  2211 22456777777776622222225666666666655   221  111 455666666666663221 1


Q ss_pred             cccccccCCcccEEEecCC
Q 036097          315 LQNIKISSPSLKRLEIFKC  333 (481)
Q Consensus       315 l~~l~~~~~~L~~L~l~~c  333 (481)
                      +.. ...+++|+.|++++|
T Consensus       188 ~~~-l~~l~~L~~L~L~~N  205 (308)
T 1h6u_A          188 ISP-LASLPNLIEVHLKNN  205 (308)
T ss_dssp             CGG-GGGCTTCCEEECTTS
T ss_pred             Chh-hcCCCCCCEEEccCC
Confidence            111 123455666666554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.14  E-value=2.2e-11  Score=114.21  Aligned_cols=200  Identities=18%  Similarity=0.085  Sum_probs=123.0

Q ss_pred             cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI--  228 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l--  228 (481)
                      ....+|..+.  ++|++|++++|.+...+......+++|++|+++++.+..-. ...+..+++|++|++++|. +..+  
T Consensus        18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~   93 (276)
T 2z62_A           18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLAL   93 (276)
T ss_dssp             CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECT
T ss_pred             CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCc-cCccCh
Confidence            3444555432  56888888888776665545667788888888887664311 1125567788888887764 2222  


Q ss_pred             -eecCCCCCcEEEEccCC--CCce-EEEecCCccEEEEcCCC-CC--CceeccCCCCCcEEEEE---echhhhHHhhhcC
Q 036097          229 -KLFGRSKLRDIKIKGGR--EAEE-VNINALNGHSITVVSPL-PS--GKINEVSCKNLKSLFLC---ITSVVDETLSYHI  298 (481)
Q Consensus       229 -~i~~~~~L~~L~l~~~~--~~~~-~~~~~p~L~~L~l~~~~-~~--~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~  298 (481)
                       .+..+++|+.|+++++.  .... ....+++|+.|+++++. ..  .+..+..+++|+.|+++   ++.. ....+..+
T Consensus        94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l  172 (276)
T 2z62_A           94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVL  172 (276)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-CGGGGHHH
T ss_pred             hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-CHHHhhhh
Confidence             23456788888887775  2211 12356788888888872 22  35678888999999887   2221 11222333


Q ss_pred             Cccc----EEEecccccccccccccccCCcccEEEecCCCCcccc----cccCCCcceeEecccccC
Q 036097          299 TRLV----VLECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAAV----EIETPNLSKCKYNGGVVP  357 (481)
Q Consensus       299 ~~L~----~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~L~~~~~~~~  357 (481)
                      ++|+    .|++++|.+. .+........+|+.|+++++. +..+    ....++|+.|.++++.+.
T Consensus       173 ~~L~~l~l~L~ls~n~l~-~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          173 HQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             HTCTTCCEEEECCSSCCC-EECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             hhccccceeeecCCCccc-ccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCCccc
Confidence            4444    7888884321 111112223489999999865 4443    345789999999887665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.14  E-value=1.6e-10  Score=108.20  Aligned_cols=188  Identities=13%  Similarity=0.025  Sum_probs=122.4

Q ss_pred             CcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE---eecCCCCCcEEEEccCCCCc---eEEEecCCccEE
Q 036097          187 PSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI---KLFGRSKLRDIKIKGGREAE---EVNINALNGHSI  260 (481)
Q Consensus       187 ~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l---~i~~~~~L~~L~l~~~~~~~---~~~~~~p~L~~L  260 (481)
                      ++|++|+++++.+.+-.. ..+..+++|++|++++|. +..+   .+..+++|+.|+++++....   .....+++|++|
T Consensus        28 ~~l~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TTCCEEECTTCCCCEECT-TTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             CCccEEECCCCcccccCH-hHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence            579999999998865221 136789999999999884 3333   24557999999999886211   112357899999


Q ss_pred             EEcCCC--CCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccccccccCCccc----EEEec
Q 036097          261 TVVSPL--PSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLK----RLEIF  331 (481)
Q Consensus       261 ~l~~~~--~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~----~L~l~  331 (481)
                      +++++.  ......+..+++|++|+++   ++...+...+..+++|+.|++++|.+...........++|+    .|+++
T Consensus       106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls  185 (276)
T 2z62_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (276)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred             ECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecC
Confidence            999872  2233458899999999987   44434556778899999999998432111111111123444    78888


Q ss_pred             CCCCcccc---cccCCCcceeEecccccCCcchhhhhccCCCccEEEEee
Q 036097          332 KCTKLAAV---EIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINF  378 (481)
Q Consensus       332 ~c~~l~~~---~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~  378 (481)
                      ++. +..+   ....++|+.|.++++.+.......+ ..+++|+.+++..
T Consensus       186 ~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~  233 (276)
T 2z62_A          186 LNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIF-DRLTSLQKIWLHT  233 (276)
T ss_dssp             SSC-CCEECTTSSCSCCEEEEECCSSCCSCCCTTTT-TTCCSCCEEECCS
T ss_pred             CCc-ccccCccccCCCcccEEECCCCceeecCHhHh-cccccccEEEccC
Confidence            754 3332   2234578888888876654433222 2567777777753

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.12  E-value=2.4e-10  Score=107.93  Aligned_cols=168  Identities=11%  Similarity=-0.052  Sum_probs=86.5

Q ss_pred             cCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE-eecCCCCCcE
Q 036097          160 VCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-KLFGRSKLRD  238 (481)
Q Consensus       160 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-~i~~~~~L~~  238 (481)
                      .+++++++++++++.+..+|..   -.++++.|+|+++.+..-. ...+..+++|++|++++|. +..+ ....+++|+.
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~---~~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~   81 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPD---LPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGT   81 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSC---CCTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCE
T ss_pred             cccCCccEEECCCCCCCcCCCC---CCCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCE
Confidence            3556777777777777655432   1357777777777665311 1235567777777777664 2222 1234566667


Q ss_pred             EEEccCC--CCceEEEecCCccEEEEcCCC-CC-CceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccccc
Q 036097          239 IKIKGGR--EAEEVNINALNGHSITVVSPL-PS-GKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIV  311 (481)
Q Consensus       239 L~l~~~~--~~~~~~~~~p~L~~L~l~~~~-~~-~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~  311 (481)
                      |+++++.  .+.......++|+.|+++++. .. .+..+..+++|+.|+++   ++ ......+..+++|+.|++++|++
T Consensus        82 L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G           82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCC
T ss_pred             EECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCcC
Confidence            7666664  111112245566666666651 11 22345556666666654   21 11122334556666666666332


Q ss_pred             ccccccccccCCcccEEEecCC
Q 036097          312 CFELQNIKISSPSLKRLEIFKC  333 (481)
Q Consensus       312 c~~l~~l~~~~~~L~~L~l~~c  333 (481)
                      ..--.......++|+.|+++++
T Consensus       161 ~~l~~~~~~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          161 TELPAGLLNGLENLDTLLLQEN  182 (290)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSS
T ss_pred             CccCHHHhcCcCCCCEEECCCC
Confidence            1111111122455566666553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.10  E-value=8.4e-11  Score=109.99  Aligned_cols=80  Identities=13%  Similarity=0.136  Sum_probs=45.6

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      +++++|.+..+    ....++ .+..+++|++|++++|.+...+  ....+++|++|+++++.+.+ .....+..+++|+
T Consensus        41 ~~L~~L~l~~~----~i~~~~-~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~  112 (272)
T 3rfs_A           41 NSIDQIIANNS----DIKSVQ-GIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLK  112 (272)
T ss_dssp             TTCCEEECTTS----CCCCCT-TGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCC
T ss_pred             cceeeeeeCCC----Cccccc-ccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCc-cChhHhcCCcCCC
Confidence            56676666554    122222 3456677777777777665432  34466777777777766543 1112245566677


Q ss_pred             eeEeeeec
Q 036097          216 DLIFEFCE  223 (481)
Q Consensus       216 ~L~l~~~~  223 (481)
                      +|++++|.
T Consensus       113 ~L~L~~n~  120 (272)
T 3rfs_A          113 ELVLVENQ  120 (272)
T ss_dssp             EEECTTSC
T ss_pred             EEECCCCc
Confidence            77766653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.09  E-value=1.6e-10  Score=110.34  Aligned_cols=131  Identities=15%  Similarity=0.125  Sum_probs=89.6

Q ss_pred             HHHHHhCCeeEEEEEEeecCCcccccCCcc--cCCCCccEEEEcCeeccCCCCCCCcCC-----CcceEEEecceecChH
Q 036097          130 VCYAIESTVKELELHTILRGDRLYHLPQMV--VCSETVNVLDLFGCILLEFPGRNSVKL-----PSLRKLRLAQVRASDQ  202 (481)
Q Consensus       130 ~~~~~~~~l~~L~L~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~  202 (481)
                      +.....+++++|+++.+  . -...+|..+  ..+++|++|+|++|.+...+ .....+     ++|++|+++++.+...
T Consensus        89 ~~~~~l~~L~~L~L~~n--~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~  164 (312)
T 1wwl_A           89 LRVLGISGLQELTLENL--E-VTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNF  164 (312)
T ss_dssp             HHHHTTSCCCEEEEEEE--B-CBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCC
T ss_pred             HHhcCcCCccEEEccCC--c-ccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccc
Confidence            33344589999999997  2 223566665  67899999999999987663 233333     8999999999988542


Q ss_pred             HHHHHhcCCCccceeEeeeecCcce------EeecCCCCCcEEEEccCCCC--ceE----EEecCCccEEEEcCC
Q 036097          203 VIENLVAGCPLIEDLIFEFCEGLKS------IKLFGRSKLRDIKIKGGREA--EEV----NINALNGHSITVVSP  265 (481)
Q Consensus       203 ~l~~l~~~~p~Le~L~l~~~~~~~~------l~i~~~~~L~~L~l~~~~~~--~~~----~~~~p~L~~L~l~~~  265 (481)
                      .. ..+..+++|++|++++|.....      +....+++|+.|++++|..-  ..+    ...+++|+.|+++++
T Consensus       165 ~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N  238 (312)
T 1wwl_A          165 SC-EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN  238 (312)
T ss_dssp             CT-TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred             hH-HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence            21 2367899999999999863322      12255688888888887521  111    113467777777666

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.08  E-value=8.7e-10  Score=100.88  Aligned_cols=90  Identities=13%  Similarity=0.173  Sum_probs=57.1

Q ss_pred             ccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEeccee-cChHHHHHHhcCCCccceeEeeeecCcceEe-
Q 036097          152 LYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVR-ASDQVIENLVAGCPLIEDLIFEFCEGLKSIK-  229 (481)
Q Consensus       152 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~-  229 (481)
                      ...+|. +  .++|++|+++++.+..++......+++|++|+++++. +.. .....+..+++|++|++++|..++.+. 
T Consensus        23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            345555 2  2478888888888877665566678888888888885 543 111125677888888888744444432 


Q ss_pred             --ecCCCCCcEEEEccCC
Q 036097          230 --LFGRSKLRDIKIKGGR  245 (481)
Q Consensus       230 --i~~~~~L~~L~l~~~~  245 (481)
                        +..+++|+.|+++++.
T Consensus        99 ~~f~~l~~L~~L~l~~n~  116 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTG  116 (239)
T ss_dssp             TSEECCTTCCEEEEEEEC
T ss_pred             HHhCCCCCCCEEeCCCCC
Confidence              3345666666666553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.07  E-value=5.1e-11  Score=117.43  Aligned_cols=94  Identities=11%  Similarity=0.115  Sum_probs=57.9

Q ss_pred             ccccCCcccCCCCccEEEEcCeeccCCCC----CCCcCCCcceEEEecceecC---h------HHHHHHhcCCCccceeE
Q 036097          152 LYHLPQMVVCSETVNVLDLFGCILLEFPG----RNSVKLPSLRKLRLAQVRAS---D------QVIENLVAGCPLIEDLI  218 (481)
Q Consensus       152 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~----~~~~~~~~L~~L~L~~~~~~---~------~~l~~l~~~~p~Le~L~  218 (481)
                      ...++..+..+++|++|+|++|.+.....    .....+++|++|+|+++.+.   +      ..+...+..+++|++|+
T Consensus        21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~  100 (386)
T 2ca6_A           21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR  100 (386)
T ss_dssp             HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence            34455556677888888888887743211    12346788888888876432   1      22333356788888888


Q ss_pred             eeeecCcc----eE--eecCCCCCcEEEEccCC
Q 036097          219 FEFCEGLK----SI--KLFGRSKLRDIKIKGGR  245 (481)
Q Consensus       219 l~~~~~~~----~l--~i~~~~~L~~L~l~~~~  245 (481)
                      +++|.--.    .+  .+..+++|+.|++++|.
T Consensus       101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A          101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence            88774221    11  23345777777777765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.06  E-value=7.4e-11  Score=112.61  Aligned_cols=220  Identities=15%  Similarity=0.129  Sum_probs=115.1

Q ss_pred             eeEEEEEEEeeCChhhHHHHHHHHHhCCeeEEEEEEeecCCcccccCCcc--cCCCCccEEEEcCeeccCCCC----CCC
Q 036097          110 VEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRLYHLPQMV--VCSETVNVLDLFGCILLEFPG----RNS  183 (481)
Q Consensus       110 l~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~~----~~~  183 (481)
                      ++.+.+... ......+..........++++|+++.+  . -....|..+  ..+++|++|+|++|.+.....    ...
T Consensus        66 l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n--~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           66 VRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDL--K-ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             CCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESC--C-CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             eeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCC--E-eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            555555422 122344444445555567888888775  1 223444444  567788888888887754221    112


Q ss_pred             cCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcce------EeecCCCCCcEEEEccCCC--CceE----E
Q 036097          184 VKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKS------IKLFGRSKLRDIKIKGGRE--AEEV----N  251 (481)
Q Consensus       184 ~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~------l~i~~~~~L~~L~l~~~~~--~~~~----~  251 (481)
                      ..+++|++|+|++|.+... ....+..+++|++|++++|.....      ..+..+++|+.|++++|..  +...    .
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~  220 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA  220 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred             hhccCCCEEEeeCCCcchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence            3577777777777766431 112345677777777777753221      1123456666666666641  1110    1


Q ss_pred             EecCCccEEEEcCCC-CC-CceeccCCCCCcEEEEEechhhhHHhhhcCCcccEEEecccccccccccccc-cCCcccEE
Q 036097          252 INALNGHSITVVSPL-PS-GKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNIKI-SSPSLKRL  328 (481)
Q Consensus       252 ~~~p~L~~L~l~~~~-~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~-~~~~L~~L  328 (481)
                      ...++|++|+++++. .. .+..+..+                   ..+++|++|++++|.+.    .++. .+++|+.|
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~-------------------~~~~~L~~L~Ls~N~l~----~lp~~~~~~L~~L  277 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRC-------------------MWSSALNSLNLSFAGLE----QVPKGLPAKLRVL  277 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSC-------------------CCCTTCCCEECCSSCCC----SCCSCCCSCCSCE
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhc-------------------cCcCcCCEEECCCCCCC----chhhhhcCCCCEE
Confidence            133555555555541 11 11112211                   12256777777664322    1111 13677777


Q ss_pred             EecCCCCccc--ccccCCCcceeEecccccCC
Q 036097          329 EIFKCTKLAA--VEIETPNLSKCKYNGGVVPF  358 (481)
Q Consensus       329 ~l~~c~~l~~--~~~~~p~L~~L~~~~~~~~~  358 (481)
                      +++++. +..  .....|+|+.|.++++.+..
T Consensus       278 ~Ls~N~-l~~~~~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          278 DLSSNR-LNRAPQPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             ECCSCC-CCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred             ECCCCc-CCCCchhhhCCCccEEECcCCCCCC
Confidence            777754 332  23456788888887776543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.06  E-value=1.8e-10  Score=112.43  Aligned_cols=234  Identities=10%  Similarity=0.024  Sum_probs=124.7

Q ss_pred             CCCCccEEEEcCeeccCCCC----CCCcCCC-cceEEEecceecCh---HHHHHHhcCC-CccceeEeeeecCcceEe--
Q 036097          161 CSETVNVLDLFGCILLEFPG----RNSVKLP-SLRKLRLAQVRASD---QVIENLVAGC-PLIEDLIFEFCEGLKSIK--  229 (481)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~----~~~~~~~-~L~~L~L~~~~~~~---~~l~~l~~~~-p~Le~L~l~~~~~~~~l~--  229 (481)
                      ..++|++|+|++|.+.+.+.    .....++ +|++|+|++|.+++   ..+..++..+ ++|++|++++|. +....  
T Consensus        20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~   98 (362)
T 3goz_A           20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSD   98 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHH
T ss_pred             CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHH
Confidence            34558888888777755442    2233566 67777777776654   3344444443 777777777664 11110  


Q ss_pred             -----ecCC-CCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEEech---hhhHHhhhc-CC
Q 036097          230 -----LFGR-SKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCITS---VVDETLSYH-IT  299 (481)
Q Consensus       230 -----i~~~-~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~-~~  299 (481)
                           +..+ ++|+.|++++|.                                        +++   ..+...+.. .+
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~----------------------------------------l~~~~~~~l~~~l~~~~~  138 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWND----------------------------------------FSSKSSSEFKQAFSNLPA  138 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSC----------------------------------------GGGSCHHHHHHHHTTSCT
T ss_pred             HHHHHHHhCCCCccEEECcCCc----------------------------------------CCcHHHHHHHHHHHhCCC
Confidence                 1111 233333333321                                        222   223344455 46


Q ss_pred             cccEEEeccccccc-ccccc---cccC-CcccEEEecCCCCccc--------ccccC-CCcceeEecccccCCcchh---
Q 036097          300 RLVVLECLGLIVCF-ELQNI---KISS-PSLKRLEIFKCTKLAA--------VEIET-PNLSKCKYNGGVVPFSSST---  362 (481)
Q Consensus       300 ~L~~L~L~~~~~c~-~l~~l---~~~~-~~L~~L~l~~c~~l~~--------~~~~~-p~L~~L~~~~~~~~~~~~~---  362 (481)
                      +|++|++++|.+.. +...+   .... ++|++|++++|. +..        ..... ++|++|.++++.+......   
T Consensus       139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~  217 (362)
T 3goz_A          139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-LASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA  217 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-CchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH
Confidence            99999999954321 11111   1123 389999999975 332        11233 4899999999877653222   


Q ss_pred             -hhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechh-h--hccCCCCCCCCceEEEEecc
Q 036097          363 -ALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKE-L--RQILPPPLSGVKHLNFSISI  436 (481)
Q Consensus       363 -~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~-~--~~~~~~~l~~L~~L~l~~~~  436 (481)
                       .+....++|+.++++.+.-.......+...+..++.|+.|+++.+....+.+. +  .....+.+.+|+.|+++.+.
T Consensus       218 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          218 YIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence             23323568888888665421111222333334444444588886652222211 1  12235566777777777654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.04  E-value=1.8e-10  Score=107.59  Aligned_cols=124  Identities=15%  Similarity=0.105  Sum_probs=83.6

Q ss_pred             CCeeEEEEEEeecCCcccccCC-cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHLPQ-MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      +++++|+++.+    ....++. .+..+++|++|+|++|.+..++......+++|++|+++++.+..- ....+..+++|
T Consensus        37 ~~l~~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L  111 (270)
T 2o6q_A           37 ADTKKLDLQSN----KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNL  111 (270)
T ss_dssp             TTCSEEECCSS----CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSC
T ss_pred             CCCCEEECcCC----CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCC
Confidence            57889988776    3345554 566799999999999998777765567899999999999987541 12336789999


Q ss_pred             ceeEeeeecCcceE---eecCCCCCcEEEEccCCC--Cc-eEEEecCCccEEEEcCC
Q 036097          215 EDLIFEFCEGLKSI---KLFGRSKLRDIKIKGGRE--AE-EVNINALNGHSITVVSP  265 (481)
Q Consensus       215 e~L~l~~~~~~~~l---~i~~~~~L~~L~l~~~~~--~~-~~~~~~p~L~~L~l~~~  265 (481)
                      ++|++++|.- ..+   .+..+++|+.|+++++..  +. .....+++|+.|+++++
T Consensus       112 ~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A          112 AELRLDRNQL-KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN  167 (270)
T ss_dssp             CEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcc-CeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence            9999998742 222   234467777777777641  10 01113455555555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.03  E-value=2.2e-10  Score=104.88  Aligned_cols=189  Identities=12%  Similarity=-0.002  Sum_probs=113.3

Q ss_pred             CCeeEEEEEEeecCCcccccCC-cccCCCCccEEEEcCee-ccCCCCCCCcCCCcceEEEecc-eecChHHHHHHhcCCC
Q 036097          136 STVKELELHTILRGDRLYHLPQ-MVVCSETVNVLDLFGCI-LLEFPGRNSVKLPSLRKLRLAQ-VRASDQVIENLVAGCP  212 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~~p  212 (481)
                      .++++|++..+    ....+|. .+..+++|++|++++|. +..+++.....+++|++|++++ +.+..- ....+..++
T Consensus        31 ~~l~~L~l~~n----~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~  105 (239)
T 2xwt_C           31 PSTQTLKLIET----HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELP  105 (239)
T ss_dssp             TTCCEEEEESC----CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCT
T ss_pred             CcccEEEEeCC----cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCC
Confidence            47899998876    3445665 45579999999999997 7667655667899999999998 666531 122366899


Q ss_pred             ccceeEeeeecCcceEeecCCCCCc---EEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCc-EEEEE---
Q 036097          213 LIEDLIFEFCEGLKSIKLFGRSKLR---DIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLK-SLFLC---  285 (481)
Q Consensus       213 ~Le~L~l~~~~~~~~l~i~~~~~L~---~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~-~L~l~---  285 (481)
                      +|++|++++|.--.--.+..+++|+   .|+++++..+..+.                  ...+..+++|+ .|+++   
T Consensus       106 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~------------------~~~~~~l~~L~~~L~l~~n~  167 (239)
T 2xwt_C          106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP------------------VNAFQGLCNETLTLKLYNNG  167 (239)
T ss_dssp             TCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEEC------------------TTTTTTTBSSEEEEECCSCC
T ss_pred             CCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcC------------------cccccchhcceeEEEcCCCC
Confidence            9999999998421111133445555   66666652221111                  11244555555 55544   


Q ss_pred             echhhhHHhhhcCCcccEEEecccccccccccc----cccC-CcccEEEecCCCCcccccc-cCCCcceeEecc
Q 036097          286 ITSVVDETLSYHITRLVVLECLGLIVCFELQNI----KISS-PSLKRLEIFKCTKLAAVEI-ETPNLSKCKYNG  353 (481)
Q Consensus       286 ~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l----~~~~-~~L~~L~l~~c~~l~~~~~-~~p~L~~L~~~~  353 (481)
                      ++ ......+.. ++|+.|++++   +..++.+    ...+ ++|+.|+++++. +..++. ..++|+.|.+.+
T Consensus       168 l~-~i~~~~~~~-~~L~~L~L~~---n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~L~~L~l~~  235 (239)
T 2xwt_C          168 FT-SVQGYAFNG-TKLDAVYLNK---NKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEHLKELIARN  235 (239)
T ss_dssp             CC-EECTTTTTT-CEEEEEECTT---CTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTTCSEEECTT
T ss_pred             Cc-ccCHhhcCC-CCCCEEEcCC---CCCcccCCHHHhhccccCCcEEECCCCc-cccCChhHhccCceeeccC
Confidence            21 111112223 6777777777   4333322    1224 677788887743 444332 356777777654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.00  E-value=3.4e-10  Score=107.97  Aligned_cols=223  Identities=13%  Similarity=0.007  Sum_probs=133.5

Q ss_pred             CCeeEEEEEEeecCCcccccCCc--ccCCCCccEEEEcCeeccCCCCCCC--cCCCcceEEEecceecChH--HHH-HHh
Q 036097          136 STVKELELHTILRGDRLYHLPQM--VVCSETVNVLDLFGCILLEFPGRNS--VKLPSLRKLRLAQVRASDQ--VIE-NLV  208 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~--~~~~~~L~~L~L~~~~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~--~l~-~l~  208 (481)
                      ..++.+.+...  ......+...  ...+++|++|++++|.+....+...  ..+++|++|+|++|.+.+.  .+. .-+
T Consensus        64 ~~l~~l~l~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           64 LRVRRLTVGAA--QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             CCCCEEEECSC--CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             cceeEEEEeCC--cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            35677776654  2222222111  1235679999999998876554444  6789999999999988651  111 223


Q ss_pred             cCCCccceeEeeeecCcce--EeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE-
Q 036097          209 AGCPLIEDLIFEFCEGLKS--IKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC-  285 (481)
Q Consensus       209 ~~~p~Le~L~l~~~~~~~~--l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~-  285 (481)
                      ..+++|++|++++|.-...  -.+..+++|+.|+++++.......               ......+..+++|++|+++ 
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---------------~~~~~~~~~l~~L~~L~Ls~  206 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG---------------LMAALCPHKFPAIQNLALRN  206 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH---------------HHTTSCTTSSCCCCSCBCCS
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh---------------hhHHHhhhcCCCCCEEECCC
Confidence            4788999999988853211  122344556666555553110000               0011223456667777665 


Q ss_pred             --ec--hhhhHHhhhcCCcccEEEeccccccccccccccc---CCcccEEEecCCCCccccccc-CCCcceeEecccccC
Q 036097          286 --IT--SVVDETLSYHITRLVVLECLGLIVCFELQNIKIS---SPSLKRLEIFKCTKLAAVEIE-TPNLSKCKYNGGVVP  357 (481)
Q Consensus       286 --~~--~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~---~~~L~~L~l~~c~~l~~~~~~-~p~L~~L~~~~~~~~  357 (481)
                        ++  ......++..+++|++|++++|.+..........   .++|++|++++|. +..++.. .++|+.|.++++.+.
T Consensus       207 N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~l~  285 (310)
T 4glp_A          207 TGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNRLN  285 (310)
T ss_dssp             SCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCCCC
T ss_pred             CCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCCcCC
Confidence              32  1222234678899999999996543321111122   2799999999865 4444332 379999999998776


Q ss_pred             Cc-chhhhhccCCCccEEEEeeCh
Q 036097          358 FS-SSTALKLLETDLNLYTINFDP  380 (481)
Q Consensus       358 ~~-~~~~l~~~~~~L~~l~l~~~~  380 (481)
                      .. ..    ..+++|+.+++..+.
T Consensus       286 ~~~~~----~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          286 RAPQP----DELPEVDNLTLDGNP  305 (310)
T ss_dssp             SCCCT----TSCCCCSCEECSSTT
T ss_pred             CCchh----hhCCCccEEECcCCC
Confidence            52 22    478999999886543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.00  E-value=2.9e-10  Score=107.31  Aligned_cols=186  Identities=14%  Similarity=0.053  Sum_probs=121.3

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      ++++++++...    ....+|..+.  ++++.|+|++|.+...++.....+++|++|+|+++.+..-..   ...+++|+
T Consensus        10 ~~l~~l~~~~~----~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~   80 (290)
T 1p9a_G           10 ASHLEVNCDKR----NLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLG   80 (290)
T ss_dssp             TTCCEEECTTS----CCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCC
T ss_pred             CCccEEECCCC----CCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCC
Confidence            35666665543    4456666553  688999999998866655566778999999999988765111   25788999


Q ss_pred             eeEeeeecCcceE--eecCCCCCcEEEEccCC--CCc-eEEEecCCccEEEEcCCC--CCCceeccCCCCCcEEEEE---
Q 036097          216 DLIFEFCEGLKSI--KLFGRSKLRDIKIKGGR--EAE-EVNINALNGHSITVVSPL--PSGKINEVSCKNLKSLFLC---  285 (481)
Q Consensus       216 ~L~l~~~~~~~~l--~i~~~~~L~~L~l~~~~--~~~-~~~~~~p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~---  285 (481)
                      +|++++|. +..+  .+..+++|+.|+++++.  .+. .....+++|+.|+++++.  .-....+..+++|+.|+++   
T Consensus        81 ~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  159 (290)
T 1p9a_G           81 TLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN  159 (290)
T ss_dssp             EEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence            99998874 2222  23456889999998886  111 222356889999999882  2233446788999999976   


Q ss_pred             echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCC
Q 036097          286 ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKC  333 (481)
Q Consensus       286 ~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c  333 (481)
                      ++ ......+..+++|+.|++++|.+. .+.......++|+.|++.++
T Consensus       160 l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          160 LT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             CS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSC
T ss_pred             CC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCC
Confidence            32 122234577899999999995432 12221222345666666653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.97  E-value=5e-10  Score=109.31  Aligned_cols=84  Identities=21%  Similarity=0.169  Sum_probs=58.7

Q ss_pred             CCeeEEEEEEeecCCcccccC-----CcccCCC-CccEEEEcCeeccCCCCCCCcC-----CCcceEEEecceecCh---
Q 036097          136 STVKELELHTILRGDRLYHLP-----QMVVCSE-TVNVLDLFGCILLEFPGRNSVK-----LPSLRKLRLAQVRASD---  201 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~-----~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~-----~~~L~~L~L~~~~~~~---  201 (481)
                      .++++|+++.+  .  ....+     ..+..++ +|++|+|++|.+.+........     +++|++|+|++|.+++   
T Consensus        22 ~~L~~L~Ls~n--~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           22 HGVTSLDLSLN--N--LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             TTCCEEECTTS--C--GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             CCceEEEccCC--C--CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence            45899988876  2  22222     3444667 8999999999886543222222     3899999999998865   


Q ss_pred             HHHHHHhcCC-CccceeEeeeec
Q 036097          202 QVIENLVAGC-PLIEDLIFEFCE  223 (481)
Q Consensus       202 ~~l~~l~~~~-p~Le~L~l~~~~  223 (481)
                      ..+...+..+ ++|++|++++|.
T Consensus        98 ~~l~~~l~~~~~~L~~L~Ls~N~  120 (362)
T 3goz_A           98 DELVKTLAAIPFTITVLDLGWND  120 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSSC
T ss_pred             HHHHHHHHhCCCCccEEECcCCc
Confidence            4455556666 899999999885

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.97  E-value=1.5e-10  Score=108.27  Aligned_cols=182  Identities=14%  Similarity=0.027  Sum_probs=112.5

Q ss_pred             CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE---eecCCCCCc
Q 036097          161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI---KLFGRSKLR  237 (481)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l---~i~~~~~L~  237 (481)
                      .+++|+.|+++++.+...+  ....+++|++|+++++.+.+-  . .+..+++|++|++++|. +..+   .+..+++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred             cccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCC
Confidence            4577888888887765443  355678888888888877541  1 35677888888888774 2222   134567888


Q ss_pred             EEEEccCCCC---ceEEEecCCccEEEEcCCC-C-CCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccc
Q 036097          238 DIKIKGGREA---EEVNINALNGHSITVVSPL-P-SGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGL  309 (481)
Q Consensus       238 ~L~l~~~~~~---~~~~~~~p~L~~L~l~~~~-~-~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~  309 (481)
                      .|++++|..-   ......+++|+.|+++++. . ..+..+..+++|+.|+++   ++ ......+..+++|+.|++++|
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N  191 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQN  191 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCC
Confidence            8888877511   1112246778888888772 2 223345777888888876   32 122334567888888888884


Q ss_pred             ccccccccccccCCcccEEEecCCCCcccccccCCCcceeEecc
Q 036097          310 IVCFELQNIKISSPSLKRLEIFKCTKLAAVEIETPNLSKCKYNG  353 (481)
Q Consensus       310 ~~c~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~p~L~~L~~~~  353 (481)
                      .+..........+++|+.|++++++.    .-.+|+|+.+....
T Consensus       192 ~l~~~~~~~~~~l~~L~~L~l~~N~~----~~~~~~l~~l~~~~  231 (272)
T 3rfs_A          192 QLKSVPDGVFDRLTSLQYIWLHDNPW----DCTCPGIRYLSEWI  231 (272)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCB----CCCTTTTHHHHHHH
T ss_pred             cCCccCHHHHhCCcCCCEEEccCCCc----cccCcHHHHHHHHH
Confidence            43222222233467888888887652    23456677666544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.94  E-value=1.1e-09  Score=103.34  Aligned_cols=100  Identities=14%  Similarity=0.134  Sum_probs=58.1

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      ++++.|++..+    ....++ .+..+++|++|++++|.+...++  ...+++|++|+++++.+.+  +.. +..+++|+
T Consensus        46 ~~L~~L~l~~~----~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~  115 (291)
T 1h6t_A           46 NSIDQIIANNS----DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--LSS-LKDLKKLK  115 (291)
T ss_dssp             HTCCEEECTTS----CCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--GGG-GTTCTTCC
T ss_pred             CcccEEEccCC----CcccCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC--Chh-hccCCCCC
Confidence            56777766654    223333 25567777777777777755543  5567777777777776654  111 55677777


Q ss_pred             eeEeeeecCcceEeecCCCCCcEEEEccCC
Q 036097          216 DLIFEFCEGLKSIKLFGRSKLRDIKIKGGR  245 (481)
Q Consensus       216 ~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~  245 (481)
                      +|++++|.--..-.+..+++|+.|++++|.
T Consensus       116 ~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~  145 (291)
T 1h6t_A          116 SLSLEHNGISDINGLVHLPQLESLYLGNNK  145 (291)
T ss_dssp             EEECTTSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             EEECCCCcCCCChhhcCCCCCCEEEccCCc
Confidence            777776632111123334555555555553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.91  E-value=1.4e-09  Score=112.98  Aligned_cols=161  Identities=15%  Similarity=0.112  Sum_probs=101.0

Q ss_pred             hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      ..+|+.|++..+    ....++ .+..+++|+.|+|++|.+...++  ...+++|+.|+|++|.+.+-  . .+..+++|
T Consensus        42 L~~L~~L~l~~n----~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L  111 (605)
T 1m9s_A           42 LNSIDQIIANNS----DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--S-SLKDLKKL  111 (605)
T ss_dssp             HTTCCCCBCTTC----CCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--T-TSTTCTTC
T ss_pred             CCCCCEEECcCC----CCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--h-hhccCCCC
Confidence            367787777665    233444 46678888888888888766553  56788888888888877551  1 25678888


Q ss_pred             ceeEeeeecCcceEeecCCCCCcEEEEccCC--CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echh
Q 036097          215 EDLIFEFCEGLKSIKLFGRSKLRDIKIKGGR--EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSV  289 (481)
Q Consensus       215 e~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~  289 (481)
                      ++|++++|.--..-.+..+++|+.|++++|.  .+ .....+++|+.|+++++.-.....+..+++|+.|+|+   +++ 
T Consensus       112 ~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~-  189 (605)
T 1m9s_A          112 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-  189 (605)
T ss_dssp             CEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-
T ss_pred             CEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC-
Confidence            8888887742221134456778888887775  22 1112456777777777622211126667777777765   222 


Q ss_pred             hhHHhhhcCCcccEEEeccc
Q 036097          290 VDETLSYHITRLVVLECLGL  309 (481)
Q Consensus       290 ~~~~~~~~~~~L~~L~L~~~  309 (481)
                       + ..+..+++|+.|+|++|
T Consensus       190 -l-~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          190 -L-RALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             -C-GGGTTCTTCSEEECCSE
T ss_pred             -C-hHHccCCCCCEEEccCC
Confidence             1 23456667777777663

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.90  E-value=1.9e-09  Score=101.71  Aligned_cols=163  Identities=15%  Similarity=0.053  Sum_probs=111.8

Q ss_pred             CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEE
Q 036097          161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIK  240 (481)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~  240 (481)
                      .+++|++|++++|.+...+  ....+++|++|+++++.+.+-..   +..+++|++|++++|.--..-.+..+++|+.|+
T Consensus        44 ~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~  118 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLS  118 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEE
T ss_pred             hcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCCChhhccCCCCCEEE
Confidence            4678888999888876664  35668889999998888765221   678888999998887422111355678899998


Q ss_pred             EccCC--CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccccccccc
Q 036097          241 IKGGR--EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFEL  315 (481)
Q Consensus       241 l~~~~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l  315 (481)
                      +++|.  .+. ....+++|+.|+++++.-.....+..+++|+.|+++   +++.  .. +..+++|+.|++++|.+.. +
T Consensus       119 L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~--~~-l~~l~~L~~L~L~~N~i~~-l  193 (291)
T 1h6t_A          119 LEHNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNHISD-L  193 (291)
T ss_dssp             CTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCB-C
T ss_pred             CCCCcCCCCh-hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccc--hh-hcCCCccCEEECCCCcCCC-C
Confidence            88886  221 122568888999888833333567888889998887   3332  12 6788899999998854321 2


Q ss_pred             ccccccCCcccEEEecCCC
Q 036097          316 QNIKISSPSLKRLEIFKCT  334 (481)
Q Consensus       316 ~~l~~~~~~L~~L~l~~c~  334 (481)
                      .. ...+++|+.|++++++
T Consensus       194 ~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          194 RA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             GG-GTTCTTCSEEEEEEEE
T ss_pred             hh-hccCCCCCEEECcCCc
Confidence            22 2346788899888754

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.89  E-value=1.7e-09  Score=95.76  Aligned_cols=101  Identities=14%  Similarity=0.153  Sum_probs=54.6

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      ++++.|+++.+    ....+| .+..+++|++|++++|.+...+  ....+++|++|+++++.+.+..+. .+..+++|+
T Consensus        44 ~~L~~L~l~~n----~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~  115 (197)
T 4ezg_A           44 NSLTYITLANI----NVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLT  115 (197)
T ss_dssp             HTCCEEEEESS----CCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTCC
T ss_pred             CCccEEeccCC----CccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccCh-hhcCCCCCC
Confidence            56777777665    222445 4556777777777777553332  344566777777776666432222 144566666


Q ss_pred             eeEeeeecCcc--eEeecCCCCCcEEEEccC
Q 036097          216 DLIFEFCEGLK--SIKLFGRSKLRDIKIKGG  244 (481)
Q Consensus       216 ~L~l~~~~~~~--~l~i~~~~~L~~L~l~~~  244 (481)
                      +|++++|.--.  .-.+..+++|+.|++++|
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n  146 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYN  146 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSC
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCC
Confidence            66666653221  112233444555554444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.89  E-value=9.1e-10  Score=101.60  Aligned_cols=91  Identities=16%  Similarity=0.130  Sum_probs=58.1

Q ss_pred             cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI--  228 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l--  228 (481)
                      ....+|..+.  +++++|+|++|.+...++.....+++|++|+|+++.+.+- ....+..+++|++|++++|. +..+  
T Consensus        25 ~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~  100 (251)
T 3m19_A           25 SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQ-LASLPL  100 (251)
T ss_dssp             CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCT
T ss_pred             CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCc-ccccCh
Confidence            4455665443  5788888888888776655666788888888888877541 12235667888888887764 2221  


Q ss_pred             -eecCCCCCcEEEEccCC
Q 036097          229 -KLFGRSKLRDIKIKGGR  245 (481)
Q Consensus       229 -~i~~~~~L~~L~l~~~~  245 (481)
                       .+..+++|+.|+++++.
T Consensus       101 ~~~~~l~~L~~L~L~~N~  118 (251)
T 3m19_A          101 GVFDHLTQLDKLYLGGNQ  118 (251)
T ss_dssp             TTTTTCTTCCEEECCSSC
T ss_pred             hHhcccCCCCEEEcCCCc
Confidence             12334566666665553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.87  E-value=1.4e-09  Score=113.09  Aligned_cols=163  Identities=14%  Similarity=0.052  Sum_probs=104.6

Q ss_pred             CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEE
Q 036097          161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIK  240 (481)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~  240 (481)
                      .+++|+.|++++|.+..++  ....+++|+.|+|++|.+.+-..   +..+++|+.|+|++|.--..-.+..+++|+.|+
T Consensus        41 ~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~  115 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLS  115 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEE
T ss_pred             cCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCCCCCCChhhccCCCCCEEE
Confidence            4577888888888776554  35567888888888887755211   667888888888877422111345568888888


Q ss_pred             EccCC--CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccccccccc
Q 036097          241 IKGGR--EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFEL  315 (481)
Q Consensus       241 l~~~~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l  315 (481)
                      +++|.  .+.. ...+++|+.|+++++.-.....+..+++|+.|+|+   +.+.  .. +..+++|+.|+|++|.+.. +
T Consensus       116 Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~i~~-l  190 (605)
T 1m9s_A          116 LEHNGISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNHISD-L  190 (605)
T ss_dssp             CTTSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCB-C
T ss_pred             ecCCCCCCCcc-ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCc--hh-hccCCCCCEEECcCCCCCC-C
Confidence            88776  2211 22567888888888733323567778888888876   3322  11 6677888888888743321 2


Q ss_pred             ccccccCCcccEEEecCCC
Q 036097          316 QNIKISSPSLKRLEIFKCT  334 (481)
Q Consensus       316 ~~l~~~~~~L~~L~l~~c~  334 (481)
                      .. ...+++|+.|++++|.
T Consensus       191 ~~-l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          191 RA-LAGLKNLDVLELFSQE  208 (605)
T ss_dssp             GG-GTTCTTCSEEECCSEE
T ss_pred             hH-HccCCCCCEEEccCCc
Confidence            11 2335778888887754

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.86  E-value=3.7e-09  Score=110.85  Aligned_cols=193  Identities=12%  Similarity=0.059  Sum_probs=103.2

Q ss_pred             CCCCcEEEEccCCCCceE-----EEecCCccEEEEcCCC-CCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccE
Q 036097          233 RSKLRDIKIKGGREAEEV-----NINALNGHSITVVSPL-PSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVV  303 (481)
Q Consensus       233 ~~~L~~L~l~~~~~~~~~-----~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~  303 (481)
                      +++|+.|.++.+......     ....++|+.+++..+. ......+..+++|+.+++.   .........+..+++++.
T Consensus       370 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~  449 (635)
T 4g8a_A          370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  449 (635)
T ss_dssp             CTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCE
T ss_pred             ccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            455666655554311110     1134455555555441 1122345556666666654   222222234556677777


Q ss_pred             EEecccccccccccccccCCcccEEEecCCCCccc----ccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeC
Q 036097          304 LECLGLIVCFELQNIKISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFD  379 (481)
Q Consensus       304 L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~  379 (481)
                      ++++.+.............+.|+.|+++++.....    .....++|+.|.++++.+.......+. .+++|+.++++.+
T Consensus       450 l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~-~l~~L~~L~Ls~N  528 (635)
T 4g8a_A          450 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN-SLSSLQVLNMSHN  528 (635)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTS
T ss_pred             ccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHc-CCCCCCEEECCCC
Confidence            77776432222223333457788888887653332    334567888888888765543332222 6788888887554


Q ss_pred             hhhHHHHHHH-HhhcccceeeEEEEEEeeceeeechhhhccCCCCC-CCCceEEEEec
Q 036097          380 PQWYVKFIEL-IAKFHQWSKVLNLLSECGESVIVPKELRQILPPPL-SGVKHLNFSIS  435 (481)
Q Consensus       380 ~~~~~~~~~~-~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~  435 (481)
                      .-     ..+ +..+.++++|+.|+++.|....+++.    .+..+ ++|+.|+|+.+
T Consensus       529 ~l-----~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~l~~l~~~L~~L~L~~N  577 (635)
T 4g8a_A          529 NF-----FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ----ELQHFPSSLAFLNLTQN  577 (635)
T ss_dssp             CC-----CBCCCGGGTTCTTCCEEECTTSCCCBCCSS----CTTCCCTTCCEEECTTC
T ss_pred             cC-----CCCChhHHhCCCCCCEEECCCCcCCCCCHH----HHHhhhCcCCEEEeeCC
Confidence            30     111 13345555556688887765554422    13333 57888988764

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.84  E-value=1.5e-09  Score=73.61  Aligned_cols=40  Identities=23%  Similarity=0.284  Sum_probs=33.9

Q ss_pred             CCccCCCCCHHHHHHHHcCCChhHHHhhhcccccchhhhc
Q 036097           13 NADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWC   52 (481)
Q Consensus        13 ~~d~i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l~~   52 (481)
                      ..+.++.||+|++.+||+||+.+|+++++.|||+|+.+..
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            3567899999999999999999999999999999998544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.84  E-value=2.5e-09  Score=94.67  Aligned_cols=140  Identities=13%  Similarity=0.064  Sum_probs=62.8

Q ss_pred             CCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcc--eEeecCCCCCcEE
Q 036097          162 SETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLK--SIKLFGRSKLRDI  239 (481)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~--~l~i~~~~~L~~L  239 (481)
                      +++|++|+++++.+..++  ....+++|++|+++++.+.+-.   .+..+++|++|++++|.--.  ...+..+++|+.|
T Consensus        43 l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG---GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             cCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch---hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            344555555555544333  2334455555555555433211   13445555555555443111  1123334555555


Q ss_pred             EEccCCCCc---eEEEecCCccEEEEcCCC-CCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccc
Q 036097          240 KIKGGREAE---EVNINALNGHSITVVSPL-PSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGL  309 (481)
Q Consensus       240 ~l~~~~~~~---~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~  309 (481)
                      ++++|....   .....+++|+.|+++++. ......+..+++|+.|+++   +++  +. .+..+++|+.|++++|
T Consensus       118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCEEEECBC
T ss_pred             EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCEEEeeCc
Confidence            555543110   111134455555555542 2111234555555555544   222  11 3456777777777764

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.81  E-value=4.7e-09  Score=96.77  Aligned_cols=169  Identities=14%  Similarity=0.060  Sum_probs=94.8

Q ss_pred             CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE---eecCCCCCcEE
Q 036097          163 ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI---KLFGRSKLRDI  239 (481)
Q Consensus       163 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l---~i~~~~~L~~L  239 (481)
                      ++.++++++++.+..+|...   .+.|++|+|+++.+..-. ...+..+++|++|++++|. +..+   .+..+++|+.|
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L   88 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTL   88 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred             CCCeEEecCCCCccccCCCC---CCCCCEEEccCCCcCccC-HhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEE
Confidence            46788999999887766422   268999999999886521 1236678999999999874 2222   13345677777


Q ss_pred             EEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccc
Q 036097          240 KIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQ  316 (481)
Q Consensus       240 ~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~  316 (481)
                      +++++..- .                  -....+..+++|++|+++   ++ ......+..+++|+.|++++|.+.....
T Consensus        89 ~L~~n~l~-~------------------~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  148 (251)
T 3m19_A           89 GLANNQLA-S------------------LPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPA  148 (251)
T ss_dssp             ECTTSCCC-C------------------CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ECCCCccc-c------------------cChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCccCH
Confidence            77666411 0                  011123344444444443   11 1111233556666666666633211111


Q ss_pred             cccccCCcccEEEecCCCCccc----ccccCCCcceeEecccccC
Q 036097          317 NIKISSPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGGVVP  357 (481)
Q Consensus       317 ~l~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~~~~  357 (481)
                      .....+++|+.|+++++. +..    .....++|+.|.+.++.+.
T Consensus       149 ~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          149 GAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             HHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCcee
Confidence            112234667777776643 222    2234567777777776654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.78  E-value=2.5e-08  Score=96.73  Aligned_cols=93  Identities=13%  Similarity=0.164  Sum_probs=62.9

Q ss_pred             cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEe-
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIK-  229 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~-  229 (481)
                      ....+|..+  .+++++|+|++|.+..++.....++++|++|+|++|.+.+......+.+++.|.++.+..+..+..+. 
T Consensus        20 ~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~   97 (350)
T 4ay9_X           20 KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP   97 (350)
T ss_dssp             TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred             CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence            455677655  36799999999998877765677889999999998876432112235677777776665554455442 


Q ss_pred             --ecCCCCCcEEEEccCC
Q 036097          230 --LFGRSKLRDIKIKGGR  245 (481)
Q Consensus       230 --i~~~~~L~~L~l~~~~  245 (481)
                        +..+++|+.|+++++.
T Consensus        98 ~~f~~l~~L~~L~l~~n~  115 (350)
T 4ay9_X           98 EAFQNLPNLQYLLISNTG  115 (350)
T ss_dssp             TSBCCCTTCCEEEEEEEC
T ss_pred             hhhhhccccccccccccc
Confidence              3445777777777664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.73  E-value=3e-08  Score=96.15  Aligned_cols=194  Identities=10%  Similarity=0.061  Sum_probs=111.4

Q ss_pred             CCeeEEEEEEeecCCcccccCCc-ccCCCCccEEEEcCeeccC-CCCCCCcCCCcceEE-EecceecChHHHHHHhcCCC
Q 036097          136 STVKELELHTILRGDRLYHLPQM-VVCSETVNVLDLFGCILLE-FPGRNSVKLPSLRKL-RLAQVRASDQVIENLVAGCP  212 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L-~L~~~~~~~~~l~~l~~~~p  212 (481)
                      +++++|+|+.+    ....+|.. +.++++|++|+|++|.+.. ++.....++++|+++ .+..+.+.. .....+..++
T Consensus        30 ~~l~~L~Ls~N----~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~  104 (350)
T 4ay9_X           30 RNAIELRFVLT----KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP  104 (350)
T ss_dssp             TTCSEEEEESC----CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCT
T ss_pred             CCCCEEEccCC----cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcc
Confidence            58999999887    45578775 4569999999999998754 444345678887664 444555532 1123367899


Q ss_pred             ccceeEeeeecCc--ceEeecCCCCCcEEEEccCCCCceEEE----e-cCCccEEEEcCC-CCCCceeccCCCCCcEEEE
Q 036097          213 LIEDLIFEFCEGL--KSIKLFGRSKLRDIKIKGGREAEEVNI----N-ALNGHSITVVSP-LPSGKINEVSCKNLKSLFL  284 (481)
Q Consensus       213 ~Le~L~l~~~~~~--~~l~i~~~~~L~~L~l~~~~~~~~~~~----~-~p~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l  284 (481)
                      +|++|++++|.--  .........++..|.+.++..+..+..    . ...++.|+++++ ....+..+....+|+.+.+
T Consensus       105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l  184 (350)
T 4ay9_X          105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL  184 (350)
T ss_dssp             TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEEC
T ss_pred             ccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhh
Confidence            9999999998522  111112235667777766654443321    1 235677777766 2222222333444555554


Q ss_pred             E---echhhhHHhhhcCCcccEEEecccccccccccccc-cCCcccEEEecCCCCccc
Q 036097          285 C---ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKI-SSPSLKRLEIFKCTKLAA  338 (481)
Q Consensus       285 ~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~-~~~~L~~L~l~~c~~l~~  338 (481)
                      .   .........+.++++|+.|++++|    .++.++. .+.+|++|.+.++.+++.
T Consensus       185 ~~~n~l~~i~~~~f~~l~~L~~LdLs~N----~l~~lp~~~~~~L~~L~~l~~~~l~~  238 (350)
T 4ay9_X          185 SDNNNLEELPNDVFHGASGPVILDISRT----RIHSLPSYGLENLKKLRARSTYNLKK  238 (350)
T ss_dssp             TTCTTCCCCCTTTTTTEECCSEEECTTS----CCCCCCSSSCTTCCEEECTTCTTCCC
T ss_pred             ccCCcccCCCHHHhccCcccchhhcCCC----CcCccChhhhccchHhhhccCCCcCc
Confidence            3   000111233456667777777763    2333322 245666666666655443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.72  E-value=3.4e-08  Score=101.50  Aligned_cols=131  Identities=17%  Similarity=0.153  Sum_probs=85.6

Q ss_pred             HhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097          134 IESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL  213 (481)
Q Consensus       134 ~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  213 (481)
                      ...+++.|+++.+    ....+|..++  ++|++|+|++|.+..+|    ..+++|++|++++|.++.  +.. +.  .+
T Consensus        57 ~~~~L~~L~Ls~n----~L~~lp~~l~--~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~--ip~-l~--~~  121 (571)
T 3cvr_A           57 LINQFSELQLNRL----NLSSLPDNLP--PQITVLEITQNALISLP----ELPASLEYLDACDNRLST--LPE-LP--AS  121 (571)
T ss_dssp             HHTTCSEEECCSS----CCSCCCSCCC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC--CCC-CC--TT
T ss_pred             ccCCccEEEeCCC----CCCccCHhHc--CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC--cch-hh--cC
Confidence            3468999998876    3345777654  78999999999987665    457899999999998764  222 22  28


Q ss_pred             cceeEeeeecCcceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCC-CCCceeccCCCCCcEEEEE
Q 036097          214 IEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPL-PSGKINEVSCKNLKSLFLC  285 (481)
Q Consensus       214 Le~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~  285 (481)
                      |++|++++|. +..+.- .+++|+.|++++|.. ..+....++|+.|+++++. ...+. +.  ++|+.|+++
T Consensus       122 L~~L~Ls~N~-l~~lp~-~l~~L~~L~Ls~N~l-~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls  188 (571)
T 3cvr_A          122 LKHLDVDNNQ-LTMLPE-LPALLEYINADNNQL-TMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVS  188 (571)
T ss_dssp             CCEEECCSSC-CSCCCC-CCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECC
T ss_pred             CCEEECCCCc-CCCCCC-cCccccEEeCCCCcc-CcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECc
Confidence            9999998874 222222 457888888887751 1121245677777777762 22222 22  556666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.66  E-value=1.8e-08  Score=93.58  Aligned_cols=57  Identities=14%  Similarity=0.085  Sum_probs=31.6

Q ss_pred             CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeee
Q 036097          161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFC  222 (481)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~  222 (481)
                      .+++|++|++++|.+...+  ....+++|++|+++++.+.+-..   +..+++|++|++++|
T Consensus        39 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSS
T ss_pred             hcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCC
Confidence            4556666666666554443  34455666666666665544111   455666666666655

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.64  E-value=6.1e-09  Score=96.70  Aligned_cols=160  Identities=10%  Similarity=0.037  Sum_probs=102.3

Q ss_pred             CCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEE
Q 036097          162 SETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKI  241 (481)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l  241 (481)
                      +.+++.++++++.+.+.+  ....+++|++|+++++.+.+-  . -+..+++|++|++++|.--....+..+++|+.|++
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L   92 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEEC
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEEC
Confidence            456677777777765543  345789999999999988652  1 26789999999999884211112667799999999


Q ss_pred             ccCC--CCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccc
Q 036097          242 KGGR--EAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQ  316 (481)
Q Consensus       242 ~~~~--~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~  316 (481)
                      +++.  .+.....  ++|+.|+++++.-.....+..+++|+.|+++   +++-   ..+..+++|+.|++++|.+...  
T Consensus        93 ~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~---~~l~~l~~L~~L~L~~N~i~~~--  165 (263)
T 1xeu_A           93 NRNRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNEITNT--  165 (263)
T ss_dssp             CSSCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC---GGGGGCTTCCEEECTTSCCCBC--
T ss_pred             CCCccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC---hHHccCCCCCEEECCCCcCcch--
Confidence            9886  2222222  8888888888733223356777777777766   3221   2355677777777777432211  


Q ss_pred             cccccCCcccEEEecCC
Q 036097          317 NIKISSPSLKRLEIFKC  333 (481)
Q Consensus       317 ~l~~~~~~L~~L~l~~c  333 (481)
                      .....+++|+.|+++++
T Consensus       166 ~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          166 GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             TTSTTCCCCCEEEEEEE
T ss_pred             HHhccCCCCCEEeCCCC
Confidence            11223456666666653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.62  E-value=3.2e-08  Score=83.12  Aligned_cols=82  Identities=29%  Similarity=0.289  Sum_probs=45.9

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      ++++.|+++.+  ......+|..+..+++|++|++++|.+...  .....+++|++|++++|.+.+. +...+..+++|+
T Consensus        17 ~~l~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~   91 (149)
T 2je0_A           17 SDVKELVLDNS--RSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLT   91 (149)
T ss_dssp             GGCSEEECTTC--BCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCC
T ss_pred             ccCeEEEccCC--cCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCC
Confidence            35666666554  222235565555666677777776666444  2344566666666666665432 233344566666


Q ss_pred             eeEeeee
Q 036097          216 DLIFEFC  222 (481)
Q Consensus       216 ~L~l~~~  222 (481)
                      +|++++|
T Consensus        92 ~L~ls~N   98 (149)
T 2je0_A           92 HLNLSGN   98 (149)
T ss_dssp             EEECTTS
T ss_pred             EEECCCC
Confidence            6666555

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.61  E-value=1e-08  Score=88.10  Aligned_cols=104  Identities=23%  Similarity=0.259  Sum_probs=74.9

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      +++++|+++.+  ......+|..+..+++|++|++++|.+...  .....+++|++|++++|.+.+. +...+..+++|+
T Consensus        24 ~~L~~L~l~~n--~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~   98 (168)
T 2ell_A           24 AAVRELVLDNC--KSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLT   98 (168)
T ss_dssp             TSCSEEECCSC--BCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCC
T ss_pred             ccCCEEECCCC--CCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCC
Confidence            67999998886  333347888778899999999999988665  4566789999999999988652 344456789999


Q ss_pred             eeEeeeecCcceE----eecCCCCCcEEEEccCC
Q 036097          216 DLIFEFCEGLKSI----KLFGRSKLRDIKIKGGR  245 (481)
Q Consensus       216 ~L~l~~~~~~~~l----~i~~~~~L~~L~l~~~~  245 (481)
                      +|++++|. +..+    .+..+++|+.|++++|.
T Consensus        99 ~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~  131 (168)
T 2ell_A           99 HLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE  131 (168)
T ss_dssp             EEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG
T ss_pred             EEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc
Confidence            99999884 2221    23345666666666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.59  E-value=1.5e-07  Score=96.83  Aligned_cols=107  Identities=14%  Similarity=0.022  Sum_probs=70.4

Q ss_pred             CCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEEc
Q 036097          163 ETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIK  242 (481)
Q Consensus       163 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~  242 (481)
                      .+|+.|++++|.+..+|...   +++|++|+|++|.++.  +.   ..+++|++|++++|. +..+.... .+|+.|+++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~-l~~ip~l~-~~L~~L~Ls  128 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL---PPQITVLEITQNALIS--LP---ELPASLEYLDACDNR-LSTLPELP-ASLKHLDVD  128 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSCCCCCC-TTCCEEECC
T ss_pred             CCccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC-CCCcchhh-cCCCEEECC
Confidence            48999999999987765422   4889999999998863  22   457899999999884 22222111 388888888


Q ss_pred             cCC--CCceEEEecCCccEEEEcCCCC-CCceeccCCCCCcEEEEE
Q 036097          243 GGR--EAEEVNINALNGHSITVVSPLP-SGKINEVSCKNLKSLFLC  285 (481)
Q Consensus       243 ~~~--~~~~~~~~~p~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~  285 (481)
                      +|.  .+..   .+++|+.|+++++.- ..+.   .+++|+.|+++
T Consensus       129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls  168 (571)
T 3cvr_A          129 NNQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVR  168 (571)
T ss_dssp             SSCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred             CCcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECC
Confidence            776  2222   567777777777621 1111   34555555544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.56  E-value=1.9e-08  Score=89.76  Aligned_cols=89  Identities=17%  Similarity=0.191  Sum_probs=53.6

Q ss_pred             ccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEe--
Q 036097          152 LYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIK--  229 (481)
Q Consensus       152 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~--  229 (481)
                      ...+|..+  .++|++|+++++.+...+......+++|++|+++++.+.. .....+..+++|++|++++|. +..+.  
T Consensus        19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~   94 (208)
T 2o6s_A           19 RTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQ-LQSLPNG   94 (208)
T ss_dssp             CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred             ccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEECCCCc-CCccCHh
Confidence            34455433  3578888888888766655445677888888888877653 112234567788888887763 22211  


Q ss_pred             -ecCCCCCcEEEEccC
Q 036097          230 -LFGRSKLRDIKIKGG  244 (481)
Q Consensus       230 -i~~~~~L~~L~l~~~  244 (481)
                       +..+++|+.|+++++
T Consensus        95 ~~~~l~~L~~L~L~~N  110 (208)
T 2o6s_A           95 VFDKLTQLKELALNTN  110 (208)
T ss_dssp             TTTTCTTCCEEECCSS
T ss_pred             HhcCccCCCEEEcCCC
Confidence             233455555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.47  E-value=1e-07  Score=85.87  Aligned_cols=136  Identities=13%  Similarity=0.112  Sum_probs=79.2

Q ss_pred             cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEe-
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIK-  229 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~-  229 (481)
                      ....+|..+.  ++|+.|++++|.+..++......+++|++|+|+++.+..-. ...+..+++|++|++++|. +..+. 
T Consensus        22 ~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~   97 (220)
T 2v9t_B           22 GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNK-ITELPK   97 (220)
T ss_dssp             CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSC-CCCCCT
T ss_pred             CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCc-CCccCH
Confidence            4455665443  67888888888887766556667888888888888775311 1235667888888888774 22221 


Q ss_pred             --ecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEE
Q 036097          230 --LFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVL  304 (481)
Q Consensus       230 --i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L  304 (481)
                        +..+++|+.|+++++..                   .+..+..+..+++|+.|+++   ++. .....+..+++|+.|
T Consensus        98 ~~f~~l~~L~~L~L~~N~l-------------------~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L  157 (220)
T 2v9t_B           98 SLFEGLFSLQLLLLNANKI-------------------NCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTM  157 (220)
T ss_dssp             TTTTTCTTCCEEECCSSCC-------------------CCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEE
T ss_pred             hHccCCCCCCEEECCCCCC-------------------CEeCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEE
Confidence              22345555555555431                   11112334555556655554   111 112234567778888


Q ss_pred             Eecccc
Q 036097          305 ECLGLI  310 (481)
Q Consensus       305 ~L~~~~  310 (481)
                      ++++|.
T Consensus       158 ~L~~N~  163 (220)
T 2v9t_B          158 HLAQNP  163 (220)
T ss_dssp             ECCSSC
T ss_pred             EeCCCC
Confidence            887753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.47  E-value=1.2e-07  Score=85.93  Aligned_cols=135  Identities=13%  Similarity=0.076  Sum_probs=82.3

Q ss_pred             cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEe-
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIK-  229 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~-  229 (481)
                      ....+|..+.  ++|++|+|++|.+...++.....+++|++|+|+++.+.. .....+..+++|++|++++|. +..+. 
T Consensus        30 ~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~N~-l~~l~~  105 (229)
T 3e6j_A           30 RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQ-LTVLPS  105 (229)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred             CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEECCCCc-CCccCh
Confidence            4456665443  788999999988877665566678889999998887743 111235678888888888774 22221 


Q ss_pred             --ecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEE
Q 036097          230 --LFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVL  304 (481)
Q Consensus       230 --i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L  304 (481)
                        +..+++|+.|+++++.                    ....+..+..+++|+.|+++   ++. .....+..+++|+.|
T Consensus       106 ~~~~~l~~L~~L~Ls~N~--------------------l~~lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L  164 (229)
T 3e6j_A          106 AVFDRLVHLKELFMCCNK--------------------LTELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHA  164 (229)
T ss_dssp             TTTTTCTTCCEEECCSSC--------------------CCSCCTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred             hHhCcchhhCeEeccCCc--------------------ccccCcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEE
Confidence              2334555555555543                    11223334555666666654   221 112345677888888


Q ss_pred             Eecccc
Q 036097          305 ECLGLI  310 (481)
Q Consensus       305 ~L~~~~  310 (481)
                      ++.+|.
T Consensus       165 ~l~~N~  170 (229)
T 3e6j_A          165 YLFGNP  170 (229)
T ss_dssp             ECTTSC
T ss_pred             EeeCCC
Confidence            888754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.46  E-value=6.5e-08  Score=83.03  Aligned_cols=58  Identities=19%  Similarity=0.175  Sum_probs=38.4

Q ss_pred             CCCccEEEEcCeecc--CCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeec
Q 036097          162 SETVNVLDLFGCILL--EFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCE  223 (481)
Q Consensus       162 ~~~L~~L~L~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~  223 (481)
                      .++|++|++++|.+.  .++. ....+++|++|++++|.+.+-   ..+..+++|++|++++|.
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~   82 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENR   82 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCC
T ss_pred             cccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCc
Confidence            467888888888775  3432 345677788888877776442   335566777777776664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.46  E-value=1.5e-07  Score=80.52  Aligned_cols=94  Identities=15%  Similarity=0.151  Sum_probs=68.7

Q ss_pred             cccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecce-ecChHHHHHHhcC---CCccceeEeeeecCcceE
Q 036097          153 YHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQV-RASDQVIENLVAG---CPLIEDLIFEFCEGLKSI  228 (481)
Q Consensus       153 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~---~p~Le~L~l~~~~~~~~l  228 (481)
                      ..+|..-...-.|++|++++|.+.+.--....++++|++|+|++| .++|..+..+...   |++|++|++++|..++.-
T Consensus        51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             GGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             ccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence            456654344567999999999875432223457899999999999 5888888887653   789999999999877653


Q ss_pred             ---eecCCCCCcEEEEccCCC
Q 036097          229 ---KLFGRSKLRDIKIKGGRE  246 (481)
Q Consensus       229 ---~i~~~~~L~~L~l~~~~~  246 (481)
                         .+..|++|++|++++|..
T Consensus       131 Gl~~L~~~~~L~~L~L~~c~~  151 (176)
T 3e4g_A          131 GIIALHHFRNLKYLFLSDLPG  151 (176)
T ss_dssp             HHHHGGGCTTCCEEEEESCTT
T ss_pred             HHHHHhcCCCCCEEECCCCCC
Confidence               334568888888877753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.45  E-value=7.5e-08  Score=85.84  Aligned_cols=104  Identities=21%  Similarity=0.237  Sum_probs=73.7

Q ss_pred             CCeeEEEEEEeecCCcccccCCc-ccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHLPQM-VVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      +++++|+++.+    ....++.. +..+++|++|++++|.+...+......+++|++|+++++.+.. .....+..+++|
T Consensus        28 ~~l~~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L  102 (208)
T 2o6s_A           28 AQTTYLDLETN----SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKLTQL  102 (208)
T ss_dssp             TTCSEEECCSS----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCcEEEcCCC----ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc-cCHhHhcCccCC
Confidence            57888888876    23355554 4578999999999999877765556789999999999998763 112235788999


Q ss_pred             ceeEeeeecCcceE---eecCCCCCcEEEEccCC
Q 036097          215 EDLIFEFCEGLKSI---KLFGRSKLRDIKIKGGR  245 (481)
Q Consensus       215 e~L~l~~~~~~~~l---~i~~~~~L~~L~l~~~~  245 (481)
                      ++|++++|. +..+   .+..+++|+.|+++++.
T Consensus       103 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  135 (208)
T 2o6s_A          103 KELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQ  135 (208)
T ss_dssp             CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCc-CcccCHhHhccCCcCCEEECCCCc
Confidence            999999874 2222   12345666666666653

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.44  E-value=6.1e-07  Score=86.02  Aligned_cols=32  Identities=25%  Similarity=0.217  Sum_probs=14.8

Q ss_pred             CCcccEEEecCCCCccc----ccccCCCcceeEeccc
Q 036097          322 SPSLKRLEIFKCTKLAA----VEIETPNLSKCKYNGG  354 (481)
Q Consensus       322 ~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~~~~~  354 (481)
                      +++|+.+++.++. +..    ...++++|+++.+.++
T Consensus       225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n  260 (329)
T 3sb4_A          225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN  260 (329)
T ss_dssp             CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT
T ss_pred             cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc
Confidence            4455555555421 222    2234556666665543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.39  E-value=1.1e-07  Score=85.70  Aligned_cols=104  Identities=15%  Similarity=0.199  Sum_probs=73.9

Q ss_pred             CCeeEEEEEEeecCCcccccCC-cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHLPQ-MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      .++++|++..+    ....++. .+..+++|++|+|++|.+....+.....+++|++|+|++|.+.. ....++..+++|
T Consensus        32 ~~l~~L~l~~n----~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L  106 (220)
T 2v9t_B           32 ETITEIRLEQN----TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGLFSL  106 (220)
T ss_dssp             TTCCEEECCSS----CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             cCCCEEECCCC----cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc-cCHhHccCCCCC
Confidence            57888888776    3344554 45568999999999999877766677789999999999998863 122335778999


Q ss_pred             ceeEeeeecCcceE---eecCCCCCcEEEEccCC
Q 036097          215 EDLIFEFCEGLKSI---KLFGRSKLRDIKIKGGR  245 (481)
Q Consensus       215 e~L~l~~~~~~~~l---~i~~~~~L~~L~l~~~~  245 (481)
                      ++|++++|. +..+   .+..+++|+.|+++++.
T Consensus       107 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  139 (220)
T 2v9t_B          107 QLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK  139 (220)
T ss_dssp             CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc
Confidence            999999884 2222   23344666666665553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.37  E-value=1.3e-07  Score=85.14  Aligned_cols=69  Identities=19%  Similarity=0.295  Sum_probs=40.8

Q ss_pred             ccccCCcccCCCCccEEEEcCeeccCCCCC-CCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeec
Q 036097          152 LYHLPQMVVCSETVNVLDLFGCILLEFPGR-NSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCE  223 (481)
Q Consensus       152 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~  223 (481)
                      ...+|..+  .+.+++|+|++|.+...++. ....+++|++|+|+++.+..-. ...+..+++|++|++++|.
T Consensus        23 l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           23 LNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             CSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC
T ss_pred             cccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCc
Confidence            34455543  24567777777777655332 2456777777777777664311 1124566777777777663

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.33  E-value=2.1e-07  Score=83.80  Aligned_cols=104  Identities=11%  Similarity=0.106  Sum_probs=71.8

Q ss_pred             CCeeEEEEEEeecCCccccc-C-CcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097          136 STVKELELHTILRGDRLYHL-P-QMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL  213 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l-~-~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  213 (481)
                      ..+++|+++.+    ....+ + ..+..+++|++|+|++|.+..+++.....+++|++|+|++|.+..- ....+..+++
T Consensus        32 ~~~~~L~L~~N----~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~  106 (220)
T 2v70_A           32 QYTAELRLNNN----EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLES  106 (220)
T ss_dssp             TTCSEEECCSS----CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSS
T ss_pred             CCCCEEEcCCC----cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcC
Confidence            45778887776    23344 2 3356799999999999999877766677899999999999988541 1223677899


Q ss_pred             cceeEeeeecCcc--eEeecCCCCCcEEEEccC
Q 036097          214 IEDLIFEFCEGLK--SIKLFGRSKLRDIKIKGG  244 (481)
Q Consensus       214 Le~L~l~~~~~~~--~l~i~~~~~L~~L~l~~~  244 (481)
                      |++|++++|.--.  .-.+..+++|+.|+++++
T Consensus       107 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  139 (220)
T 2v70_A          107 LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN  139 (220)
T ss_dssp             CCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS
T ss_pred             CCEEECCCCcCCeECHhHcCCCccCCEEECCCC
Confidence            9999999875211  112334455555555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.33  E-value=2.6e-07  Score=83.69  Aligned_cols=104  Identities=15%  Similarity=0.135  Sum_probs=74.8

Q ss_pred             CCeeEEEEEEeecCCccccc-CCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHL-PQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      ++++.|+++.+    ....+ |..+..+++|++|+|++|.+..++......+++|++|+|++|.+.. .....+..+++|
T Consensus        40 ~~L~~L~Ls~n----~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L  114 (229)
T 3e6j_A           40 TNAQILYLHDN----QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHL  114 (229)
T ss_dssp             TTCSEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCCEEEcCCC----ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCc-cChhHhCcchhh
Confidence            68999998876    23334 4556678999999999999977776556789999999999998864 112335679999


Q ss_pred             ceeEeeeecCcceE--eecCCCCCcEEEEccCC
Q 036097          215 EDLIFEFCEGLKSI--KLFGRSKLRDIKIKGGR  245 (481)
Q Consensus       215 e~L~l~~~~~~~~l--~i~~~~~L~~L~l~~~~  245 (481)
                      ++|++++|. +..+  .+..+++|+.|+++++.
T Consensus       115 ~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~  146 (229)
T 3e6j_A          115 KELFMCCNK-LTELPRGIERLTHLTHLALDQNQ  146 (229)
T ss_dssp             CEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC
T ss_pred             CeEeccCCc-ccccCcccccCCCCCEEECCCCc
Confidence            999999885 2222  22344666666666553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.30  E-value=2.1e-07  Score=90.56  Aligned_cols=155  Identities=13%  Similarity=0.028  Sum_probs=83.3

Q ss_pred             cccccCCcccCCCCccEEEEcCeeccCCCCCCCc-CCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE-
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSV-KLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-  228 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-  228 (481)
                      ....+|..+.  +.++.|+|++|.+...+..... .+++|++|+|++|.+..-. ...+..+++|++|++++|. +..+ 
T Consensus        29 ~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~  104 (361)
T 2xot_A           29 QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNH-LHTLD  104 (361)
T ss_dssp             CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEEC
T ss_pred             CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCc-CCcCC
Confidence            3445555432  4577888888877666544444 6778888888877765311 1125567778888887764 3332 


Q ss_pred             --eecCCCCCcEEEEccCCCCc---eEEEecCCccEEEEcCC-CCCCcee-c---cCCCCCcEEEEE---echhhhHHhh
Q 036097          229 --KLFGRSKLRDIKIKGGREAE---EVNINALNGHSITVVSP-LPSGKIN-E---VSCKNLKSLFLC---ITSVVDETLS  295 (481)
Q Consensus       229 --~i~~~~~L~~L~l~~~~~~~---~~~~~~p~L~~L~l~~~-~~~~~~~-~---~~~~~L~~L~l~---~~~~~~~~~~  295 (481)
                        .+..+++|+.|+++++....   .....+++|+.|+++++ ....+.. +   ..+++|+.|+++   ++. .....+
T Consensus       105 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~  183 (361)
T 2xot_A          105 EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDL  183 (361)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC-CCHHHH
T ss_pred             HHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc-cCHHHh
Confidence              13345777777777664111   11123566677776666 2222221 2   446666666655   221 111233


Q ss_pred             hcCCc--ccEEEecccc
Q 036097          296 YHITR--LVVLECLGLI  310 (481)
Q Consensus       296 ~~~~~--L~~L~L~~~~  310 (481)
                      ..+++  |+.|++.+|.
T Consensus       184 ~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          184 QKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             HHSCHHHHTTEECCSSC
T ss_pred             hhccHhhcceEEecCCC
Confidence            44444  3566666643

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.26  E-value=1.8e-07  Score=90.96  Aligned_cols=144  Identities=16%  Similarity=0.069  Sum_probs=102.8

Q ss_pred             CCeeEEEEEEeecCCcccccCCccc--CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVV--CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL  213 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  213 (481)
                      ..++.|+|+.+    ....++...+  .+++|++|+|++|.+..+++.....+++|++|+|++|.+..- ....+..+++
T Consensus        39 ~~l~~L~Ls~N----~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~  113 (361)
T 2xot_A           39 SYTALLDLSHN----NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQA  113 (361)
T ss_dssp             TTCSEEECCSS----CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTT
T ss_pred             CCCCEEECCCC----CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcC
Confidence            46788888876    3445555444  789999999999999877766677899999999999987541 1223678899


Q ss_pred             cceeEeeeecCcceE---eecCCCCCcEEEEccCC--CCc-eEE---EecCCccEEEEcCCC-CC-CceeccCCCC--Cc
Q 036097          214 IEDLIFEFCEGLKSI---KLFGRSKLRDIKIKGGR--EAE-EVN---INALNGHSITVVSPL-PS-GKINEVSCKN--LK  280 (481)
Q Consensus       214 Le~L~l~~~~~~~~l---~i~~~~~L~~L~l~~~~--~~~-~~~---~~~p~L~~L~l~~~~-~~-~~~~~~~~~~--L~  280 (481)
                      |++|++++|. +..+   .+..+++|+.|+++++.  .+. .+.   ..+++|+.|+++++. .. ....+..++.  ++
T Consensus       114 L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~  192 (361)
T 2xot_A          114 LEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKN  192 (361)
T ss_dssp             CCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHT
T ss_pred             CCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcc
Confidence            9999999885 3332   34567999999999986  211 111   357999999999982 22 2234566666  37


Q ss_pred             EEEEE
Q 036097          281 SLFLC  285 (481)
Q Consensus       281 ~L~l~  285 (481)
                      .|++.
T Consensus       193 ~l~l~  197 (361)
T 2xot_A          193 GLYLH  197 (361)
T ss_dssp             TEECC
T ss_pred             eEEec
Confidence            77776

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.22  E-value=4.2e-07  Score=78.59  Aligned_cols=59  Identities=12%  Similarity=0.043  Sum_probs=34.8

Q ss_pred             cCCCCccEEEEcCeeccCCCCCCCcC-CCcceEEEecceecChHHHHHHhcCCCccceeEeeeec
Q 036097          160 VCSETVNVLDLFGCILLEFPGRNSVK-LPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCE  223 (481)
Q Consensus       160 ~~~~~L~~L~L~~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~  223 (481)
                      ..+.+|+.|++++|.+..++  .... .++|+.|++++|.+.+-   ..+..+++|++|++++|.
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~--~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~   75 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR   75 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCC--CGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC
T ss_pred             CCcCCceEEEeeCCCCchhH--HhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCc
Confidence            45667777777777765443  2223 34777777777766431   224556666666666653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.19  E-value=5.3e-08  Score=86.16  Aligned_cols=65  Identities=20%  Similarity=0.207  Sum_probs=37.1

Q ss_pred             ccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeee
Q 036097          154 HLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFC  222 (481)
Q Consensus       154 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~  222 (481)
                      .+|..+..+++|++|++++|.+..++  ....+++|++|++++|.+..  +...+..+++|++|++++|
T Consensus        39 ~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N  103 (198)
T 1ds9_A           39 KMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYN  103 (198)
T ss_dssp             CCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEE
T ss_pred             hhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCC
Confidence            33335555666777777776665543  44456666777776666542  2222334466666666665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.18  E-value=9.7e-07  Score=85.47  Aligned_cols=60  Identities=17%  Similarity=0.239  Sum_probs=35.2

Q ss_pred             HHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEEEccCCCCc----eEE-EecCCccEEEEc
Q 036097          203 VIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAE----EVN-INALNGHSITVV  263 (481)
Q Consensus       203 ~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~----~~~-~~~p~L~~L~l~  263 (481)
                      .+..++..+|+|++|.++++.++....+. +++|++|.+..|....    .+. ..+|+|+.|+++
T Consensus       163 ~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             BCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             CHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            35566788999999999887443222222 3777777776554111    111 135666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.15  E-value=1.6e-06  Score=83.08  Aligned_cols=229  Identities=11%  Similarity=0.054  Sum_probs=123.2

Q ss_pred             eeEEEEEEEeeCChhhHHHHHHHHHhCCeeEEEEEEeecC-------Cc---------ccccCCccc-C--------CCC
Q 036097          110 VEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRG-------DR---------LYHLPQMVV-C--------SET  164 (481)
Q Consensus       110 l~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~~~-------~~---------~~~l~~~~~-~--------~~~  164 (481)
                      ++.+.+....  ....+ .++... .++++.|+|+.+.-.       ..         ...+|...| .        |++
T Consensus        27 l~~L~l~g~i--~~~~~-~~l~~~-l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~  102 (329)
T 3sb4_A           27 ITHLTLTGKL--NAEDF-RHLRDE-FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQT  102 (329)
T ss_dssp             CSEEEEEEEE--CHHHH-HHHHHS-CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTT
T ss_pred             eeEEEEeccc--cHHHH-HHHHHh-hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCC
Confidence            6777776431  12222 222221 468999999876211       00         003344333 4        788


Q ss_pred             ccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeec------CcceEeecCCCCCc-
Q 036097          165 VNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCE------GLKSIKLFGRSKLR-  237 (481)
Q Consensus       165 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~------~~~~l~i~~~~~L~-  237 (481)
                      |+.|+|.. .+..++......|++|+++++..+.+.. .....+..|..+..+......      .+....+..|.+|+ 
T Consensus       103 L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~-i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~  180 (329)
T 3sb4_A          103 LEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN-LLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET  180 (329)
T ss_dssp             CCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE-ECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred             CcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc-cchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence            88888888 6656666667778888888888775432 001123456555555433210      01111111122332 


Q ss_pred             -------------------------EEEEccCCC---CceEEEecCCccEEEEcCC-CCC-CceeccCCCCCcEEEEEec
Q 036097          238 -------------------------DIKIKGGRE---AEEVNINALNGHSITVVSP-LPS-GKINEVSCKNLKSLFLCIT  287 (481)
Q Consensus       238 -------------------------~L~l~~~~~---~~~~~~~~p~L~~L~l~~~-~~~-~~~~~~~~~~L~~L~l~~~  287 (481)
                                               .+.+.+...   ...+...+++|++++++++ ... ....+.+|++|+.+.+.-+
T Consensus       181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n  260 (329)
T 3sb4_A          181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN  260 (329)
T ss_dssp             EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT
T ss_pred             eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc
Confidence                                     333222110   0000013788999998875 222 3346888999999987611


Q ss_pred             hh-hhHHhhhcCCccc-EEEecccccccccccc----cccCCcccEEEecCCCCccc----ccccCCCcceeE
Q 036097          288 SV-VDETLSYHITRLV-VLECLGLIVCFELQNI----KISSPSLKRLEIFKCTKLAA----VEIETPNLSKCK  350 (481)
Q Consensus       288 ~~-~~~~~~~~~~~L~-~L~L~~~~~c~~l~~l----~~~~~~L~~L~l~~c~~l~~----~~~~~p~L~~L~  350 (481)
                      -. .-...+.+|++|+ .+.+.+     +++.+    -..|++|+.+++.+. .+..    ...++++|+++.
T Consensus       261 i~~I~~~aF~~~~~L~~~l~l~~-----~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          261 LKTIGQRVFSNCGRLAGTLELPA-----SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CCEECTTTTTTCTTCCEEEEECT-----TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred             cceehHHHhhCChhccEEEEEcc-----cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence            11 1123467889999 999876     23322    234688999998653 3443    345678888875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.14  E-value=1.6e-06  Score=74.02  Aligned_cols=80  Identities=16%  Similarity=0.147  Sum_probs=42.3

Q ss_pred             CccEEEEcCCC--CCCceeccCCCCCcEEEEE----echhhhHHhhhc---CCcccEEEeccccccccccccc----ccC
Q 036097          256 NGHSITVVSPL--PSGKINEVSCKNLKSLFLC----ITSVVDETLSYH---ITRLVVLECLGLIVCFELQNIK----ISS  322 (481)
Q Consensus       256 ~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~----~~~~~~~~~~~~---~~~L~~L~L~~~~~c~~l~~l~----~~~  322 (481)
                      +|++|++++|.  ......+..|++|++|+|+    +++..+..+...   +++|++|+|++   |.++++-.    ..+
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~---C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIIS---CGNVTDKGIIALHHF  138 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEES---CTTCCHHHHHHGGGC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCC---CCcCCHHHHHHHhcC
Confidence            35555555552  1112234556666666665    556555555442   45666666666   66555321    135


Q ss_pred             CcccEEEecCCCCccc
Q 036097          323 PSLKRLEIFKCTKLAA  338 (481)
Q Consensus       323 ~~L~~L~l~~c~~l~~  338 (481)
                      ++|++|++++|+.+++
T Consensus       139 ~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TTCCEEEEESCTTCCC
T ss_pred             CCCCEEECCCCCCCCc
Confidence            6666666666665543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.14  E-value=6.1e-06  Score=79.85  Aligned_cols=122  Identities=18%  Similarity=0.197  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHhccCCCCCCCcceeEEEEEEEeeCC--h--hhHHHHHHHH-HhCCeeEEEEEEeecCCc--------ccc
Q 036097           88 LLNYWKQALEAHRHHCSTGKLSVEKLRFKASFLDD--S--ELADRCVCYA-IESTVKELELHTILRGDR--------LYH  154 (481)
Q Consensus        88 ~~~~v~~~l~~~~~~~~~~~~~l~~l~l~~~~~~~--~--~~~~~~~~~~-~~~~l~~L~L~~~~~~~~--------~~~  154 (481)
                      +...+.+++...... +     ++.+.+... ..+  .  ..+..+.... ..++|+.|.+...  ...        ...
T Consensus        93 ~~~~~~~fl~~~~~~-~-----v~~L~lg~~-~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~--~~e~~~is~~~~~~  163 (362)
T 2ra8_A           93 GVNLMDKILKDKKLP-S-----LKQITIGXW-GYEGEDCSDIADGIVENKEKFAHFEGLFWGDI--DFEEQEISWIEQVD  163 (362)
T ss_dssp             TCCHHHHHHHCTTGG-G-----CSEEEECCC-CSSSCCSHHHHHHHHTTHHHHTTCSEEEECCC--CTTTCCGGGCBCCB
T ss_pred             HHHHHHHHhcCCCch-h-----cceEEEccc-ccCCCcHHHHHHHHHHhhhhcchhhheeecCc--chhhcccccccccC
Confidence            334455555554432 2     777776632 222  1  2233333222 3479999988543  111        123


Q ss_pred             cCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhc-CCCccceeEeee
Q 036097          155 LPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVA-GCPLIEDLIFEF  221 (481)
Q Consensus       155 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~-~~p~Le~L~l~~  221 (481)
                      +...+..+|+|+.|+|+++.....+.   ...++|++|+|..+.+++..+..+.. .+|+|++|+|..
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l~l~~---~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~  228 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNLSIGK---KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV  228 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTCBCCS---CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred             HHHHHhcCCCCcEEEEeCCCCceecc---ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence            44455678999999999884323322   34899999999999888877766653 799999999864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.10  E-value=1.8e-06  Score=75.81  Aligned_cols=68  Identities=13%  Similarity=0.093  Sum_probs=29.5

Q ss_pred             ccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeee
Q 036097          154 HLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFC  222 (481)
Q Consensus       154 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~  222 (481)
                      .+|..+..+++|++|+|++|.+..+++.....+++|++|+|++|.+..-. ...+..+++|++|++++|
T Consensus        45 ~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~L~~N  112 (193)
T 2wfh_A           45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLLSLHGN  112 (193)
T ss_dssp             SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCSS
T ss_pred             hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEEECCCC
Confidence            34444444455555555555544443333444455555555554443210 011334444444444444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.06  E-value=8.3e-08  Score=93.65  Aligned_cols=88  Identities=15%  Similarity=0.089  Sum_probs=44.5

Q ss_pred             HhCCeeEEEEEEeecCCcc---cccCCccc-CCCCccEEEEcCeeccCCCC-CCCcCCCcceEEEecceecChHHHHHH-
Q 036097          134 IESTVKELELHTILRGDRL---YHLPQMVV-CSETVNVLDLFGCILLEFPG-RNSVKLPSLRKLRLAQVRASDQVIENL-  207 (481)
Q Consensus       134 ~~~~l~~L~L~~~~~~~~~---~~l~~~~~-~~~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l-  207 (481)
                      ..+.+++|+++.+  ....   ..+...+. .+++|++|+|++|.+.+... .....+++|++|+|++|.+++.....+ 
T Consensus        70 ~~~~L~~L~Ls~n--~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~  147 (372)
T 3un9_A           70 VLSSLRQLNLAGV--RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR  147 (372)
T ss_dssp             HHTTCCEEECTTS--CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred             HHhhCCEEEecCC--CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence            4466777776655  2111   11222222 23567777777776532100 011234567777777777666333322 


Q ss_pred             --h-cCCCccceeEeeeec
Q 036097          208 --V-AGCPLIEDLIFEFCE  223 (481)
Q Consensus       208 --~-~~~p~Le~L~l~~~~  223 (481)
                        + ..++.|++|++++|.
T Consensus       148 ~~L~~~~~~L~~L~Ls~n~  166 (372)
T 3un9_A          148 DLLLHDQCQITTLRLSNNP  166 (372)
T ss_dssp             HHHHSTTCCCCEEECCSSC
T ss_pred             HHHHhcCCccceeeCCCCC
Confidence              2 245667777776663

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.05  E-value=4.3e-06  Score=69.87  Aligned_cols=14  Identities=21%  Similarity=0.147  Sum_probs=7.0

Q ss_pred             hhcCCcccEEEecc
Q 036097          295 SYHITRLVVLECLG  308 (481)
Q Consensus       295 ~~~~~~L~~L~L~~  308 (481)
                      +..+++|+.|++++
T Consensus        60 ~~~l~~L~~L~Ls~   73 (149)
T 2je0_A           60 LPKLNKLKKLELSD   73 (149)
T ss_dssp             CCCCTTCCEEECCS
T ss_pred             hhcCCCCCEEECCC
Confidence            34445555555555

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.02  E-value=2.1e-06  Score=74.13  Aligned_cols=130  Identities=18%  Similarity=0.156  Sum_probs=70.5

Q ss_pred             CcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE-eecCCCCCcEEEEccCCCCceEEEecCCccEEE
Q 036097          183 SVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-KLFGRSKLRDIKIKGGREAEEVNINALNGHSIT  261 (481)
Q Consensus       183 ~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~  261 (481)
                      ...+++|+.|+++++.+..  +..+....|+|++|++++|. +..+ .+..+++|+.|+++++.. ..+.          
T Consensus        15 ~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l-~~~~----------   80 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRI-CRIG----------   80 (176)
T ss_dssp             EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSCC-CEEC----------
T ss_pred             cCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCcc-cccC----------
Confidence            4467889999999998764  22333445689999998874 3332 334456666666666541 1111          


Q ss_pred             EcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccccccccccc---ccccCCcccEEEecCCC
Q 036097          262 VVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQN---IKISSPSLKRLEIFKCT  334 (481)
Q Consensus       262 l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~---l~~~~~~L~~L~l~~c~  334 (481)
                              +..+..+++|+.|+++   ++.-.....+..+++|+.|++++|.++..-..   ....+++|+.|+++.+.
T Consensus        81 --------~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           81 --------EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             --------SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             --------cchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence                    1112444555555544   22111112445677777777777443211111   23346777777777654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.02  E-value=2.3e-06  Score=73.91  Aligned_cols=69  Identities=20%  Similarity=0.202  Sum_probs=43.9

Q ss_pred             ccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeec
Q 036097          152 LYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCE  223 (481)
Q Consensus       152 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~  223 (481)
                      ...+|..+  .++|++|+++++.+...+......+++|++|+++++.+.. .....+..+++|++|++++|.
T Consensus        19 l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           19 LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             CSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred             CccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE-eChhHccCCCccCEEECCCCC
Confidence            34455433  2578888888887766655445667788888888776643 111224567777777777663

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.01  E-value=1.1e-06  Score=80.13  Aligned_cols=34  Identities=24%  Similarity=0.451  Sum_probs=32.3

Q ss_pred             cCCCCCHHHHHHHHcCCChhHHHhhhcccccchh
Q 036097           16 RISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEK   49 (481)
Q Consensus        16 ~i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~   49 (481)
                      .+++||+||+.+||+||+++|+++++.|||+||.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~   37 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE   37 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999995

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.01  E-value=1.8e-06  Score=75.73  Aligned_cols=91  Identities=21%  Similarity=0.247  Sum_probs=58.3

Q ss_pred             cccccCCcccCCCCccEEEEcCeeccCCCCC-CCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE-
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGR-NSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-  228 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-  228 (481)
                      ....+|..+.  ++|++|++++|.+...+.. ....+++|++|+|+++.++.-. ...+..+++|++|++++|. +..+ 
T Consensus        19 ~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~   94 (192)
T 1w8a_A           19 GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENK-IKEIS   94 (192)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCC-CCEEC
T ss_pred             CcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCc-CCccC
Confidence            3456666544  3788888888888766643 2567888888888888775421 2235677888888888774 2222 


Q ss_pred             --eecCCCCCcEEEEccCC
Q 036097          229 --KLFGRSKLRDIKIKGGR  245 (481)
Q Consensus       229 --~i~~~~~L~~L~l~~~~  245 (481)
                        .+..+++|+.|+++++.
T Consensus        95 ~~~~~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           95 NKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             SSSSTTCTTCCEEECCSSC
T ss_pred             HHHhcCCCCCCEEECCCCc
Confidence              13344666666665553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.94  E-value=1.5e-05  Score=78.42  Aligned_cols=31  Identities=6%  Similarity=0.053  Sum_probs=14.0

Q ss_pred             CCccEEEEcCCCCC-CceeccCCCCCcEEEEE
Q 036097          255 LNGHSITVVSPLPS-GKINEVSCKNLKSLFLC  285 (481)
Q Consensus       255 p~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~  285 (481)
                      .+|+.+.+...... ....+.+|++|+.+.+.
T Consensus       248 ~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~  279 (401)
T 4fdw_A          248 SGITTVKLPNGVTNIASRAFYYCPELAEVTTY  279 (401)
T ss_dssp             CCCSEEEEETTCCEECTTTTTTCTTCCEEEEE
T ss_pred             CCccEEEeCCCccEEChhHhhCCCCCCEEEeC
Confidence            34555554333211 12345555566655554

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.93  E-value=4.5e-06  Score=77.16  Aligned_cols=38  Identities=32%  Similarity=0.614  Sum_probs=34.8

Q ss_pred             ccCCCCCHHHHHHHHcCCChhHHH-hhhcccccchhhhc
Q 036097           15 DRISALPEPLLQHIMSFLPSKDAV-RTRLLSKIWEKAWC   52 (481)
Q Consensus        15 d~i~~LPd~iL~~Ils~L~~~d~~-r~~~vskrW~~l~~   52 (481)
                      ..+..||+|+|.+||++||.++++ |+++|||+|+.+..
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~   87 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVD   87 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc
Confidence            468899999999999999999999 99999999998543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.92  E-value=3.9e-06  Score=73.56  Aligned_cols=103  Identities=12%  Similarity=0.111  Sum_probs=74.2

Q ss_pred             CCeeEEEEEEeecCCcccccCC--cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097          136 STVKELELHTILRGDRLYHLPQ--MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL  213 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  213 (481)
                      .++++|+++.+    ....++.  .+..+++|++|+|++|.+...++.....+++|++|+|++|.+..-. ...+..+++
T Consensus        29 ~~l~~L~l~~n----~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~  103 (192)
T 1w8a_A           29 LHTTELLLNDN----ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQ  103 (192)
T ss_dssp             TTCSEEECCSC----CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTT
T ss_pred             CCCCEEECCCC----cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC-HHHhcCCCC
Confidence            37888888776    3345554  3667999999999999998776667778999999999999886521 123567899


Q ss_pred             cceeEeeeecCcceE---eecCCCCCcEEEEccC
Q 036097          214 IEDLIFEFCEGLKSI---KLFGRSKLRDIKIKGG  244 (481)
Q Consensus       214 Le~L~l~~~~~~~~l---~i~~~~~L~~L~l~~~  244 (481)
                      |++|++++|. +..+   .+..+++|+.|+++++
T Consensus       104 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A          104 LKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCEEECCSSC-CCEECTTSSTTCTTCCEEECTTC
T ss_pred             CCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCC
Confidence            9999999885 2222   2334466666666555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.92  E-value=3.5e-06  Score=86.85  Aligned_cols=79  Identities=23%  Similarity=0.203  Sum_probs=50.1

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      ..++.|+++.+    ....+|. +..+++|+.|+|++|.+..+|. ....+++|++|+|++|.++.  ++ -+..+++|+
T Consensus       441 ~~L~~L~Ls~n----~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~  511 (567)
T 1dce_A          441 ADVRVLHLAHK----DLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN--VD-GVANLPRLQ  511 (567)
T ss_dssp             TTCSEEECTTS----CCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCC
T ss_pred             cCceEEEecCC----CCCCCcC-ccccccCcEeecCcccccccch-hhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCc
Confidence            35666666654    3334565 6667777777777777765543 45567777777777776654  22 356677777


Q ss_pred             eeEeeeec
Q 036097          216 DLIFEFCE  223 (481)
Q Consensus       216 ~L~l~~~~  223 (481)
                      +|++++|.
T Consensus       512 ~L~Ls~N~  519 (567)
T 1dce_A          512 ELLLCNNR  519 (567)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCC
Confidence            77777663

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.91  E-value=6.9e-06  Score=70.88  Aligned_cols=103  Identities=21%  Similarity=0.234  Sum_probs=72.8

Q ss_pred             CCeeEEEEEEeecCCcccccCCcc-cCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHLPQMV-VCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      +++++|++..+    ....++... ..+++|++|++++|.+...++.....+++|++|+++++.+.. .....+..+++|
T Consensus        28 ~~l~~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L  102 (177)
T 2o6r_A           28 SSATRLELESN----KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQL  102 (177)
T ss_dssp             TTCSEEECCSS----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCcEEEeCCC----cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccc-cCHHHhhCCccc
Confidence            57899988876    234555544 578999999999999987776556789999999999998864 122235678999


Q ss_pred             ceeEeeeecCcceEe---ecCCCCCcEEEEccC
Q 036097          215 EDLIFEFCEGLKSIK---LFGRSKLRDIKIKGG  244 (481)
Q Consensus       215 e~L~l~~~~~~~~l~---i~~~~~L~~L~l~~~  244 (481)
                      ++|++++|. +..+.   +..+++|+.|+++++
T Consensus       103 ~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A          103 KELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             CEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECcCCc-ceEeCHHHhcCCcccCEEEecCC
Confidence            999999874 33221   223455666665554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.91  E-value=4.1e-06  Score=86.34  Aligned_cols=117  Identities=18%  Similarity=0.105  Sum_probs=63.0

Q ss_pred             CccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE-eecCCCCCcEEEEc
Q 036097          164 TVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-KLFGRSKLRDIKIK  242 (481)
Q Consensus       164 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-~i~~~~~L~~L~l~  242 (481)
                      .|+.|+|++|.+..+|.  ...+++|+.|+|++|.+.  .++..+..+++|++|++++|.- ..+ .+..          
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l-~~lp~l~~----------  506 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNAL-ENVDGVAN----------  506 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCC-CCCGGGTT----------
T ss_pred             CceEEEecCCCCCCCcC--ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCC-CCCcccCC----------
Confidence            46666666666655542  455666666666666654  2222345566666666665531 111 2223          


Q ss_pred             cCCCCceEEEecCCccEEEEcCC-CCCC--ceeccCCCCCcEEEEE---echh--hhHHhhhcCCcccEEEe
Q 036097          243 GGREAEEVNINALNGHSITVVSP-LPSG--KINEVSCKNLKSLFLC---ITSV--VDETLSYHITRLVVLEC  306 (481)
Q Consensus       243 ~~~~~~~~~~~~p~L~~L~l~~~-~~~~--~~~~~~~~~L~~L~l~---~~~~--~~~~~~~~~~~L~~L~L  306 (481)
                                 +++|+.|+++++ ....  +..+..+++|+.|+++   +++.  ....+...+|+|+.|++
T Consensus       507 -----------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          507 -----------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             -----------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             -----------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence                       345555555555 2222  4556677777777765   2221  22344556778877753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.86  E-value=7.1e-06  Score=72.00  Aligned_cols=89  Identities=22%  Similarity=0.289  Sum_probs=52.3

Q ss_pred             cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI--  228 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l--  228 (481)
                      ....+|..+.  ++|++|++++|.+..++ .....+++|++|+|+++.++.-. ...+..+++|++|++++|. +..+  
T Consensus        21 ~l~~ip~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~~   95 (193)
T 2wfh_A           21 GLKVLPKGIP--RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNR-LRCIPP   95 (193)
T ss_dssp             CCSSCCSCCC--TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCBCCT
T ss_pred             CCCcCCCCCC--CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCc-cCEeCH
Confidence            3445565432  57888888888776555 35566778888888887765311 1225567777777777764 2221  


Q ss_pred             -eecCCCCCcEEEEccC
Q 036097          229 -KLFGRSKLRDIKIKGG  244 (481)
Q Consensus       229 -~i~~~~~L~~L~l~~~  244 (481)
                       .+..+++|+.|+++++
T Consensus        96 ~~f~~l~~L~~L~L~~N  112 (193)
T 2wfh_A           96 RTFDGLKSLRLLSLHGN  112 (193)
T ss_dssp             TTTTTCTTCCEEECCSS
T ss_pred             HHhCCCCCCCEEECCCC
Confidence             1223345555555444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.83  E-value=7.5e-06  Score=70.21  Aligned_cols=90  Identities=19%  Similarity=0.187  Sum_probs=58.5

Q ss_pred             cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI--  228 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l--  228 (481)
                      ....+|..+.  ++|++|+|++|.+..+++.....+++|++|+|++|.+.. .....+..+++|++|++++|. +..+  
T Consensus        20 ~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~-l~~~~~   95 (170)
T 3g39_A           20 SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQ-LKSIPR   95 (170)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred             CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCCCc-cCEeCH
Confidence            4455666553  778888888888877766566778888888888887753 112235677888888888774 2222  


Q ss_pred             -eecCCCCCcEEEEccC
Q 036097          229 -KLFGRSKLRDIKIKGG  244 (481)
Q Consensus       229 -~i~~~~~L~~L~l~~~  244 (481)
                       .+..+++|+.|+++++
T Consensus        96 ~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           96 GAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TTTTTCTTCCEEECCSS
T ss_pred             HHhcCCCCCCEEEeCCC
Confidence             1233455555555554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.80  E-value=1.1e-05  Score=69.35  Aligned_cols=90  Identities=17%  Similarity=0.118  Sum_probs=59.0

Q ss_pred             cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI--  228 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l--  228 (481)
                      ....+|..+.  ++|++|+|++|.+...++.....+++|++|+|++|.+.. .....+..+++|++|++++|. +..+  
T Consensus        23 ~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~-l~~l~~   98 (174)
T 2r9u_A           23 RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNH-LKSIPR   98 (174)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCT
T ss_pred             CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCCCc-cceeCH
Confidence            4456776553  788999999988877766566788889999998887754 112234677888888888774 2222  


Q ss_pred             -eecCCCCCcEEEEccC
Q 036097          229 -KLFGRSKLRDIKIKGG  244 (481)
Q Consensus       229 -~i~~~~~L~~L~l~~~  244 (481)
                       .+..+++|+.|+++++
T Consensus        99 ~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           99 GAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             TTTTTCTTCSEEECCSS
T ss_pred             HHhccccCCCEEEeCCC
Confidence             1233455555555544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.65  E-value=1.2e-05  Score=80.43  Aligned_cols=40  Identities=25%  Similarity=0.404  Sum_probs=36.6

Q ss_pred             CCccCCCCCHHHHHHHHcCCChhHHHhhhcccccchhhhc
Q 036097           13 NADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWC   52 (481)
Q Consensus        13 ~~d~i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l~~   52 (481)
                      ..|.|+.||+|++.+||+||+.+|++++++|||+|+++..
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~   50 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR   50 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999999999999997543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.62  E-value=2.3e-05  Score=76.27  Aligned_cols=160  Identities=9%  Similarity=-0.017  Sum_probs=84.7

Q ss_pred             CCCCcEEEEE---echhhhH---Hhhh-cCCcccEEEeccccccc-ccccccccCCcccEEEecCCCCccc-----c---
Q 036097          276 CKNLKSLFLC---ITSVVDE---TLSY-HITRLVVLECLGLIVCF-ELQNIKISSPSLKRLEIFKCTKLAA-----V---  339 (481)
Q Consensus       276 ~~~L~~L~l~---~~~~~~~---~~~~-~~~~L~~L~L~~~~~c~-~l~~l~~~~~~L~~L~l~~c~~l~~-----~---  339 (481)
                      .++|+.|+++   +++....   ..+. ..++|+.|+|++|.+.. .+..+...+++|+.|++++|. +.+     +   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHH
Confidence            4678888876   4443322   2333 34688888888843211 122233334678888888864 332     1   


Q ss_pred             -cccCCCcceeEecccccCCcchhhhh---ccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechh
Q 036097          340 -EIETPNLSKCKYNGGVVPFSSSTALK---LLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKE  415 (481)
Q Consensus       340 -~~~~p~L~~L~~~~~~~~~~~~~~l~---~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~  415 (481)
                       ....++|++|.++++.+.......+.   ..+++|+.+++..+.--......+...+.....|++|+++.|........
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence             12357788888888766543322221   25677887777665522223334444555555555577776543321100


Q ss_pred             hhccCCCCCCCCceEEEEecc
Q 036097          416 LRQILPPPLSGVKHLNFSISI  436 (481)
Q Consensus       416 ~~~~~~~~l~~L~~L~l~~~~  436 (481)
                      .....+...++|++|+|+.+.
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHHHHhCCCCCEEeccCCC
Confidence            000112223567778777665

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.59  E-value=4.7e-05  Score=74.78  Aligned_cols=61  Identities=8%  Similarity=0.134  Sum_probs=35.4

Q ss_pred             cCCccc-CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecce--ecChHHHHHHhcCCCccceeEee
Q 036097          155 LPQMVV-CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQV--RASDQVIENLVAGCPLIEDLIFE  220 (481)
Q Consensus       155 l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~--~~~~~~l~~l~~~~p~Le~L~l~  220 (481)
                      +....| +|.+|+.+.|... +..+......+|++|+.++|...  .+.+.    .+..|+.|+.+.+.
T Consensus        62 Ig~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~----aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           62 IGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSVKMIGRC----TFSGCYALKSILLP  125 (394)
T ss_dssp             ECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTT----TTTTCTTCCCCCCC
T ss_pred             hHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCceEccch----hhcccccchhhccc
Confidence            444333 5778888888643 33444445567788888877543  22221    25567777766553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.54  E-value=1.6e-05  Score=69.89  Aligned_cols=102  Identities=17%  Similarity=0.163  Sum_probs=74.4

Q ss_pred             HhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097          134 IESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL  213 (481)
Q Consensus       134 ~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  213 (481)
                      ..+++++|+++.+    ....+| .+..+++|++|++++|.+..++. ....+++|++|++++|.+.+  +. -+..+++
T Consensus        46 ~l~~L~~L~ls~n----~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~  116 (198)
T 1ds9_A           46 TLKACKHLALSTN----NIEKIS-SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIAS--LS-GIEKLVN  116 (198)
T ss_dssp             HTTTCSEEECSEE----EESCCC-CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCC--HH-HHHHHHH
T ss_pred             cCCCCCEEECCCC----CCcccc-ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCc--CC-ccccCCC
Confidence            3579999999887    334477 67789999999999999976653 33456899999999999875  22 2567899


Q ss_pred             cceeEeeeecCc--ceE-eecCCCCCcEEEEccC
Q 036097          214 IEDLIFEFCEGL--KSI-KLFGRSKLRDIKIKGG  244 (481)
Q Consensus       214 Le~L~l~~~~~~--~~l-~i~~~~~L~~L~l~~~  244 (481)
                      |++|++++|.--  ..+ .+..+++|+.|+++++
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence            999999988522  111 2344566777766665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.53  E-value=4.7e-05  Score=65.43  Aligned_cols=83  Identities=14%  Similarity=0.102  Sum_probs=65.5

Q ss_pred             CCeeEEEEEEeecCCccccc-CCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHL-PQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      .+++.|+++.+    ....+ |..+..+++|++|+|++|.+..++......+++|++|+|++|.+.. .....+..+++|
T Consensus        33 ~~L~~L~Ls~N----~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L  107 (174)
T 2r9u_A           33 TDKQRLWLNNN----QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSL  107 (174)
T ss_dssp             TTCSEEECCSS----CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCcEEEeCCC----CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccce-eCHHHhccccCC
Confidence            68899998876    33455 4456679999999999999988776556789999999999998864 112336779999


Q ss_pred             ceeEeeeec
Q 036097          215 EDLIFEFCE  223 (481)
Q Consensus       215 e~L~l~~~~  223 (481)
                      ++|++++|.
T Consensus       108 ~~L~L~~N~  116 (174)
T 2r9u_A          108 THIYLYNNP  116 (174)
T ss_dssp             SEEECCSSC
T ss_pred             CEEEeCCCC
Confidence            999999875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.51  E-value=5.2e-05  Score=64.87  Aligned_cols=83  Identities=18%  Similarity=0.135  Sum_probs=65.0

Q ss_pred             CCeeEEEEEEeecCCccccc-CCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHL-PQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      .+++.|+++.+    ....+ |..+..+++|++|+|++|.+..+++.....+++|++|+|++|.+.. .....+..+++|
T Consensus        30 ~~l~~L~L~~N----~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L  104 (170)
T 3g39_A           30 TTTQVLYLYDN----QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSL  104 (170)
T ss_dssp             TTCSEEECCSS----CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             CCCcEEEcCCC----cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE-eCHHHhcCCCCC
Confidence            67888888876    34445 4456679999999999999988776566789999999999998854 112236778999


Q ss_pred             ceeEeeeec
Q 036097          215 EDLIFEFCE  223 (481)
Q Consensus       215 e~L~l~~~~  223 (481)
                      ++|++++|.
T Consensus       105 ~~L~L~~N~  113 (170)
T 3g39_A          105 THIWLLNNP  113 (170)
T ss_dssp             CEEECCSSC
T ss_pred             CEEEeCCCC
Confidence            999999874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.47  E-value=1.8e-05  Score=84.19  Aligned_cols=60  Identities=15%  Similarity=0.102  Sum_probs=25.2

Q ss_pred             cCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeee
Q 036097          160 VCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFC  222 (481)
Q Consensus       160 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~  222 (481)
                      ..+++|+.|+|++|.+..++. ....+++|++|+|++|.++  .+..-+..+++|++|+|++|
T Consensus       221 ~~l~~L~~L~Ls~n~l~~l~~-~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N  280 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQIFNISA-NIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHN  280 (727)
T ss_dssp             -CCCCCCEEECTTSCCSCCCG-GGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTS
T ss_pred             ccCCCCcEEECCCCCCCCCCh-hhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCC
Confidence            344445555555544433322 2224444555555544443  11112334444555555444

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.46  E-value=2.1e-05  Score=83.62  Aligned_cols=102  Identities=18%  Similarity=0.282  Sum_probs=67.4

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      ..++.|+|+.+    ....+|..++.+++|++|+|++|.+..+| .....+++|++|+|++|.++  .+..-+..+++|+
T Consensus       224 ~~L~~L~Ls~n----~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~  296 (727)
T 4b8c_D          224 QLWHALDLSNL----QIFNISANIFKYDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLK  296 (727)
T ss_dssp             CCCCEEECTTS----CCSCCCGGGGGCCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCS
T ss_pred             CCCcEEECCCC----CCCCCChhhcCCCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCC
Confidence            46777777665    33467777777888888888888776554 34567788888888888775  2233356677788


Q ss_pred             eeEeeeecCcceE--eecCCCCCcEEEEccCC
Q 036097          216 DLIFEFCEGLKSI--KLFGRSKLRDIKIKGGR  245 (481)
Q Consensus       216 ~L~l~~~~~~~~l--~i~~~~~L~~L~l~~~~  245 (481)
                      +|+|++|. +..+  .+..+++|+.|+++++.
T Consensus       297 ~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          297 YFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             EEECCSSC-CCCCCSSTTSCTTCCCEECTTSC
T ss_pred             EEECCCCC-CCccChhhhcCCCccEEeCCCCc
Confidence            88887773 2222  24456777777777665

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.42  E-value=6.5e-05  Score=74.71  Aligned_cols=37  Identities=32%  Similarity=0.529  Sum_probs=35.4

Q ss_pred             CCccCCCCCHHHHHHHHcCCChhHHHhhhcccccchh
Q 036097           13 NADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEK   49 (481)
Q Consensus        13 ~~d~i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~   49 (481)
                      ..|.++.||+|++.+||+||+.+|+++++.|||+|+.
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~   51 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRI   51 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHh
Confidence            5689999999999999999999999999999999986

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.38  E-value=0.00024  Score=69.74  Aligned_cols=140  Identities=10%  Similarity=0.067  Sum_probs=75.3

Q ss_pred             CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecce--ecChHHHHHHhcCCCccceeEeeeecCcceE---eecCCCC
Q 036097          161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQV--RASDQVIENLVAGCPLIEDLIFEFCEGLKSI---KLFGRSK  235 (481)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~--~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l---~i~~~~~  235 (481)
                      .|.+|+.+++.++.+..++.... .+.+|+.+.|...  .+.+    ..+..|++|+++.+..+  +..+   .+.+ .+
T Consensus       178 ~c~~L~~l~l~~n~l~~I~~~aF-~~~~L~~l~lp~~l~~I~~----~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~  249 (401)
T 4fdw_A          178 YCYNLKKADLSKTKITKLPASTF-VYAGIEEVLLPVTLKEIGS----QAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SG  249 (401)
T ss_dssp             TCTTCCEEECTTSCCSEECTTTT-TTCCCSEEECCTTCCEECT----TTTTTCTTCCCEECCTT--CCEECTTTTTT-CC
T ss_pred             CcccCCeeecCCCcceEechhhE-eecccCEEEeCCchheehh----hHhhCCCCCCEEecCCC--ccCcccccccc-CC
Confidence            46777777777666655443222 3566777766543  1211    12567788888877642  3332   2223 67


Q ss_pred             CcEEEEccCC-C-CceEEEecCCccEEEEcCCCCC-------CceeccCCCCCcEEEEEechhh-hHHhhhcCCcccEEE
Q 036097          236 LRDIKIKGGR-E-AEEVNINALNGHSITVVSPLPS-------GKINEVSCKNLKSLFLCITSVV-DETLSYHITRLVVLE  305 (481)
Q Consensus       236 L~~L~l~~~~-~-~~~~~~~~p~L~~L~l~~~~~~-------~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~  305 (481)
                      |+.+.+.... . .......+++|+.+.+.+....       ....+.+|++|+.+.+.-+-.. -...+.+|++|+.+.
T Consensus       250 L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~  329 (401)
T 4fdw_A          250 ITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLT  329 (401)
T ss_dssp             CSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEE
T ss_pred             ccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEE
Confidence            7777775432 1 1112246889999999876221       2335667777777765400000 012334556666666


Q ss_pred             ecc
Q 036097          306 CLG  308 (481)
Q Consensus       306 L~~  308 (481)
                      |..
T Consensus       330 lp~  332 (401)
T 4fdw_A          330 IPA  332 (401)
T ss_dssp             ECT
T ss_pred             ECc
Confidence            543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.32  E-value=3.9e-05  Score=76.21  Aligned_cols=37  Identities=32%  Similarity=0.601  Sum_probs=34.9

Q ss_pred             CCccCCCCCHH----HHHHHHcCCChhHHHhhhcccccchh
Q 036097           13 NADRISALPEP----LLQHIMSFLPSKDAVRTRLLSKIWEK   49 (481)
Q Consensus        13 ~~d~i~~LPd~----iL~~Ils~L~~~d~~r~~~vskrW~~   49 (481)
                      ..|.++.||+|    |+.+||+||+.+|++++++|||+|++
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~   47 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR   47 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            36899999999    99999999999999999999999995

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.05  E-value=0.00027  Score=67.86  Aligned_cols=91  Identities=21%  Similarity=0.235  Sum_probs=63.0

Q ss_pred             cccccCCcccCCCCccEEEEcC-eeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEe
Q 036097          151 RLYHLPQMVVCSETVNVLDLFG-CILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIK  229 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~  229 (481)
                      ....+|. +..+.+|++|+|++ |.+..+++.....+++|+.|+|++|.+.. .....+..+++|++|+|++|. +..+.
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~-l~~~~   96 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNA-LESLS   96 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSC-CSCCC
T ss_pred             CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCc-cceeC
Confidence            4556888 77888999999986 88877765567788999999999988754 122236778899999998874 22221


Q ss_pred             ---ecCCCCCcEEEEccCC
Q 036097          230 ---LFGRSKLRDIKIKGGR  245 (481)
Q Consensus       230 ---i~~~~~L~~L~l~~~~  245 (481)
                         +.. .+|+.|.+.++.
T Consensus        97 ~~~~~~-~~L~~l~l~~N~  114 (347)
T 2ifg_A           97 WKTVQG-LSLQELVLSGNP  114 (347)
T ss_dssp             STTTCS-CCCCEEECCSSC
T ss_pred             HHHccc-CCceEEEeeCCC
Confidence               112 236666666553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.81  E-value=0.0043  Score=60.59  Aligned_cols=11  Identities=0%  Similarity=0.117  Sum_probs=3.3

Q ss_pred             hcCcccceEEE
Q 036097          452 WMSPHVDTVTI  462 (481)
Q Consensus       452 ~~~p~L~~L~l  462 (481)
                      ..|.+|+.+.+
T Consensus       375 ~~~~~L~~i~i  385 (394)
T 4gt6_A          375 STDSGLQNLPV  385 (394)
T ss_dssp             BCCCCC-----
T ss_pred             hccCCCCEEEe
Confidence            44556666555

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.74  E-value=0.0039  Score=60.86  Aligned_cols=34  Identities=18%  Similarity=0.310  Sum_probs=15.5

Q ss_pred             CcCCCcceEEEeccee--cChHHHHHHhcCCCccceeEee
Q 036097          183 SVKLPSLRKLRLAQVR--ASDQVIENLVAGCPLIEDLIFE  220 (481)
Q Consensus       183 ~~~~~~L~~L~L~~~~--~~~~~l~~l~~~~p~Le~L~l~  220 (481)
                      ...+++|+.+.+....  +.+    ..+..|++|+.+.+.
T Consensus       158 F~~c~~L~~i~l~~~~~~I~~----~~F~~c~~L~~i~l~  193 (394)
T 4fs7_A          158 FATCESLEYVSLPDSMETLHN----GLFSGCGKLKSIKLP  193 (394)
T ss_dssp             TTTCTTCCEEECCTTCCEECT----TTTTTCTTCCBCCCC
T ss_pred             hcccCCCcEEecCCccceecc----ccccCCCCceEEEcC
Confidence            3445556666554321  111    124455555555553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.72  E-value=0.0054  Score=59.86  Aligned_cols=99  Identities=8%  Similarity=0.014  Sum_probs=50.5

Q ss_pred             cCCCcceeEeccccc--CCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEeeceeeechhhhcc
Q 036097          342 ETPNLSKCKYNGGVV--PFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQI  419 (481)
Q Consensus       342 ~~p~L~~L~~~~~~~--~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~~  419 (481)
                      .|.+|+++.+.....  .....    .+|++|+.+.+...-  .. ++  -..|.++.+|+.+.|..+ ...+.+.    
T Consensus       263 ~c~~L~~i~lp~~~~~I~~~aF----~~c~~L~~i~l~~~i--~~-I~--~~aF~~c~~L~~i~lp~~-v~~I~~~----  328 (394)
T 4gt6_A          263 SCAYLASVKMPDSVVSIGTGAF----MNCPALQDIEFSSRI--TE-LP--ESVFAGCISLKSIDIPEG-ITQILDD----  328 (394)
T ss_dssp             TCSSCCEEECCTTCCEECTTTT----TTCTTCCEEECCTTC--CE-EC--TTTTTTCTTCCEEECCTT-CCEECTT----
T ss_pred             ecccccEEecccccceecCccc----ccccccccccCCCcc--cc-cC--ceeecCCCCcCEEEeCCc-ccEehHh----
Confidence            456677777655322  22222    377777777662110  00 00  023333344444766533 3333322    


Q ss_pred             CCCCCCCCceEEEEecc-cchhhhHHHHHhhhhhcCcccceEEE
Q 036097          420 LPPPLSGVKHLNFSISI-PFKKFAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       420 ~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                      .+..+.+|+.+.|-... .++        ..-+.+|++|+.+.+
T Consensus       329 aF~~C~~L~~i~ip~sv~~I~--------~~aF~~C~~L~~i~~  364 (394)
T 4gt6_A          329 AFAGCEQLERIAIPSSVTKIP--------ESAFSNCTALNNIEY  364 (394)
T ss_dssp             TTTTCTTCCEEEECTTCCBCC--------GGGGTTCTTCCEEEE
T ss_pred             HhhCCCCCCEEEECcccCEEh--------HhHhhCCCCCCEEEE
Confidence            24446788888884321 111        344678999999888

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.68  E-value=0.00023  Score=61.68  Aligned_cols=33  Identities=12%  Similarity=0.112  Sum_probs=15.4

Q ss_pred             CcceEEEecceecChHH---HHHHhcCCCccceeEe
Q 036097          187 PSLRKLRLAQVRASDQV---IENLVAGCPLIEDLIF  219 (481)
Q Consensus       187 ~~L~~L~L~~~~~~~~~---l~~l~~~~p~Le~L~l  219 (481)
                      ++|++|+|++|.+++..   +...+..++.|++|++
T Consensus        93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A           93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRI  128 (185)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence            44555555555555432   2222334445555555

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.60  E-value=0.00071  Score=58.59  Aligned_cols=63  Identities=11%  Similarity=0.090  Sum_probs=35.5

Q ss_pred             cCCCCccEEEEcCe-eccCCC----CCCCcCCCcceEEEecceecChHH---HHHHhcCCCccceeEeeee
Q 036097          160 VCSETVNVLDLFGC-ILLEFP----GRNSVKLPSLRKLRLAQVRASDQV---IENLVAGCPLIEDLIFEFC  222 (481)
Q Consensus       160 ~~~~~L~~L~L~~~-~~~~~~----~~~~~~~~~L~~L~L~~~~~~~~~---l~~l~~~~p~Le~L~l~~~  222 (481)
                      ..+++|++|+|++| .+.+..    .......++|++|+|++|.+.+..   +...+...+.|++|++++|
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N  103 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN  103 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence            45677777777777 542210    001223566777777777776633   3333445566666666655

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.28  E-value=0.0012  Score=63.22  Aligned_cols=82  Identities=17%  Similarity=0.125  Sum_probs=59.7

Q ss_pred             CCeeEEEEEE-eecCCcccccCC-cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097          136 STVKELELHT-ILRGDRLYHLPQ-MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL  213 (481)
Q Consensus       136 ~~l~~L~L~~-~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  213 (481)
                      .+|++|+|+. +    ....++. .+..+++|+.|+|++|.+..+++.....+++|++|+|++|.+.. ....++...+ 
T Consensus        31 ~~L~~L~l~~~n----~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~-  104 (347)
T 2ifg_A           31 ENLTELYIENQQ----HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLS-  104 (347)
T ss_dssp             SCCSEEECCSCS----SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTTCSCC-
T ss_pred             CCeeEEEccCCC----CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccce-eCHHHcccCC-
Confidence            4688998874 4    3445553 45678999999999999887776666789999999999998753 1112233344 


Q ss_pred             cceeEeeeec
Q 036097          214 IEDLIFEFCE  223 (481)
Q Consensus       214 Le~L~l~~~~  223 (481)
                      |+.|++.+|.
T Consensus       105 L~~l~l~~N~  114 (347)
T 2ifg_A          105 LQELVLSGNP  114 (347)
T ss_dssp             CCEEECCSSC
T ss_pred             ceEEEeeCCC
Confidence            9999998764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.36  E-value=0.0061  Score=55.81  Aligned_cols=61  Identities=23%  Similarity=0.207  Sum_probs=26.2

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCC--cceEEEecceec
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLP--SLRKLRLAQVRA  199 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~--~L~~L~L~~~~~  199 (481)
                      ++|+.|+|+.+ .-.....+|..+..+++|+.|+|++|.+....  ....++  +|++|+|.+|.+
T Consensus       170 ~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~--~l~~l~~l~L~~L~L~~Npl  232 (267)
T 3rw6_A          170 PELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSER--ELDKIKGLKLEELWLDGNSL  232 (267)
T ss_dssp             TTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG--GGGGGTTSCCSEEECTTSTT
T ss_pred             CCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCch--hhhhcccCCcceEEccCCcC
Confidence            45555555544 01111123333344555555555555553331  111122  555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.10  E-value=0.0044  Score=56.72  Aligned_cols=61  Identities=18%  Similarity=0.217  Sum_probs=37.4

Q ss_pred             CCCCccEEEEcCeeccCCCC--CCCcCCCcceEEEecceecCh-HHHHHHhcCCCccceeEeeeec
Q 036097          161 CSETVNVLDLFGCILLEFPG--RNSVKLPSLRKLRLAQVRASD-QVIENLVAGCPLIEDLIFEFCE  223 (481)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~Le~L~l~~~~  223 (481)
                      ++++|+.|+|++|.+..++.  .....+++|+.|+|++|.+.+ ..+.. +... .|++|.+++|.
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Np  231 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNS  231 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTST
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCc
Confidence            36778888888887755432  122357778888887777755 23332 2223 67777777664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=93.64  E-value=0.29  Score=46.97  Aligned_cols=73  Identities=10%  Similarity=0.157  Sum_probs=35.8

Q ss_pred             CCeeEEEEEEeecCCcccccCCccc-CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecce--ecChHHHHHHhcCCC
Q 036097          136 STVKELELHTILRGDRLYHLPQMVV-CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQV--RASDQVIENLVAGCP  212 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~--~~~~~~l~~l~~~~p  212 (481)
                      .+++.+.+..     ....++...| +|.+|+.++|..+ +..+.......+ +|+.+.+...  .+.+..    +..| 
T Consensus        46 ~~i~~v~ip~-----~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~l~~I~~~a----F~~~-  113 (379)
T 4h09_A           46 DRISEVRVNS-----GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMERVKKFGDYV----FQGT-  113 (379)
T ss_dssp             GGCSEEEECT-----TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTTCCEECTTT----TTTC-
T ss_pred             cCCEEEEeCC-----CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCceeeEeccce----eccC-
Confidence            4566665432     3344554443 4778888888643 323333333344 4666655432  122221    2333 


Q ss_pred             ccceeEee
Q 036097          213 LIEDLIFE  220 (481)
Q Consensus       213 ~Le~L~l~  220 (481)
                      .|+++.+.
T Consensus       114 ~L~~i~lp  121 (379)
T 4h09_A          114 DLDDFEFP  121 (379)
T ss_dssp             CCSEEECC
T ss_pred             CcccccCC
Confidence            57777664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=88.08  E-value=0.082  Score=45.71  Aligned_cols=100  Identities=16%  Similarity=0.215  Sum_probs=55.4

Q ss_pred             hhhHHHHHHHHHh--CCeeEEEEEEe-e-cCCcccccCCcccCCCCccEEEEcCeeccCCCCCC----CcCCCcceEEEe
Q 036097          123 SELADRCVCYAIE--STVKELELHTI-L-RGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRN----SVKLPSLRKLRL  194 (481)
Q Consensus       123 ~~~~~~~~~~~~~--~~l~~L~L~~~-~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~----~~~~~~L~~L~L  194 (481)
                      ...++..+..+..  +.+++|+|... . .......+...+.....|+.|+|++|.+.+.-...    ...-+.|++|+|
T Consensus        26 ~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L  105 (197)
T 1pgv_A           26 DTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNV  105 (197)
T ss_dssp             -CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred             CCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec
Confidence            4456666666544  45888877542 0 01112223334445677888888888764321111    112356888888


Q ss_pred             cceecChHHHHHH---hcCCCccceeEeeee
Q 036097          195 AQVRASDQVIENL---VAGCPLIEDLIFEFC  222 (481)
Q Consensus       195 ~~~~~~~~~l~~l---~~~~p~Le~L~l~~~  222 (481)
                      ++|.+++.....+   +..-+.|++|+|+++
T Consensus       106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             CSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            8888877444333   444455777777654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=85.73  E-value=1.9  Score=41.22  Aligned_cols=210  Identities=11%  Similarity=0.051  Sum_probs=94.4

Q ss_pred             ccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecce--ecChHHHHHHhcCCCccceeEeeeecCcc---
Q 036097          152 LYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQV--RASDQVIENLVAGCPLIEDLIFEFCEGLK---  226 (481)
Q Consensus       152 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~--~~~~~~l~~l~~~~p~Le~L~l~~~~~~~---  226 (481)
                      ...++...+...+|+.+++..... ....... ....|+...+...  .+...    .+..|..++...+.......   
T Consensus       102 l~~I~~~aF~~~~L~~i~lp~~~~-~i~~~~F-~~~~l~~~~~~~~v~~i~~~----~f~~~~~l~~~~~~~~~~~~~~~  175 (379)
T 4h09_A          102 VKKFGDYVFQGTDLDDFEFPGATT-EIGNYIF-YNSSVKRIVIPKSVTTIKDG----IGYKAENLEKIEVSSNNKNYVAE  175 (379)
T ss_dssp             CCEECTTTTTTCCCSEEECCTTCC-EECTTTT-TTCCCCEEEECTTCCEECSC----TTTTCTTCCEEEECTTCSSEEEE
T ss_pred             eeEeccceeccCCcccccCCCccc-ccccccc-ccceeeeeeccceeeccccc----hhcccccccccccccccceeecc
Confidence            344555556666899999876432 2221122 2235655555432  11111    24567888777765432110   


Q ss_pred             -----------eEeecCCCCCcEEEEccCCC--CceEEEecCCccEEEEcCCCCC-CceeccCCCCCcEEEEEechhhh-
Q 036097          227 -----------SIKLFGRSKLRDIKIKGGRE--AEEVNINALNGHSITVVSPLPS-GKINEVSCKNLKSLFLCITSVVD-  291 (481)
Q Consensus       227 -----------~l~i~~~~~L~~L~l~~~~~--~~~~~~~~p~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~-  291 (481)
                                 ......+.++..+.+.....  .......+.+|+.+.+...... ....+.+|.+|+.+.+.-+...+ 
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~~I~  255 (379)
T 4h09_A          176 NYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVTSIG  255 (379)
T ss_dssp             TTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCCEEC
T ss_pred             cceecccccceeccccccccccccccccceeEEeecccccccccceeeeccceeEEccccccCCccceEEEcCCCccEeC
Confidence                       01111223444443322210  0000112344555554433111 12335566677776654110001 


Q ss_pred             HHhhhcCCcccEEEeccccccccccccc----ccCCcccEEEecCCC--Cccc-ccccCCCcceeEecccc--cCCcchh
Q 036097          292 ETLSYHITRLVVLECLGLIVCFELQNIK----ISSPSLKRLEIFKCT--KLAA-VEIETPNLSKCKYNGGV--VPFSSST  362 (481)
Q Consensus       292 ~~~~~~~~~L~~L~L~~~~~c~~l~~l~----~~~~~L~~L~l~~c~--~l~~-~~~~~p~L~~L~~~~~~--~~~~~~~  362 (481)
                      ...+.++.+|+.+.+..     +++.+.    ..|++|+.+.+..+.  .+.+ ...+|.+|+++.+....  +..... 
T Consensus       256 ~~aF~~~~~l~~i~l~~-----~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF-  329 (379)
T 4h09_A          256 SFLLQNCTALKTLNFYA-----KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQVYAF-  329 (379)
T ss_dssp             TTTTTTCTTCCEEEECC-----CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTT-
T ss_pred             ccccceeehhccccccc-----cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCccccEEHHHHh-
Confidence            12345666777776644     222221    235667777665421  1222 23456777777775421  222222 


Q ss_pred             hhhccCCCccEEEE
Q 036097          363 ALKLLETDLNLYTI  376 (481)
Q Consensus       363 ~l~~~~~~L~~l~l  376 (481)
                         .+|.+|+.+.+
T Consensus       330 ---~~C~~L~~i~i  340 (379)
T 4h09_A          330 ---KNCKALSTISY  340 (379)
T ss_dssp             ---TTCTTCCCCCC
T ss_pred             ---hCCCCCCEEEE
Confidence               26777777655

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=83.56  E-value=0.72  Score=36.76  Aligned_cols=44  Identities=27%  Similarity=0.249  Sum_probs=34.6

Q ss_pred             ccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceec
Q 036097          154 HLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRA  199 (481)
Q Consensus       154 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~  199 (481)
                      .+|..+  .++|++|+|++|.+..++......+++|++|+|.+|.+
T Consensus        24 ~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           24 SLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             cCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            566432  24699999999999888776677889999999998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	481
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	3e-06
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	2e-05
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	0.001

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 3e-06
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 10/89 (11%)

Query: 15  DRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVLNFDEDLFERELLEMRAA 74
           D IS LP+ L  +++SFL  KD ++     + W            D  L+  +  E    
Sbjct: 17  DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAE-------DNLLWREKCKEEGID 69

Query: 75  RGDVQKFNQA--RGKLLNYWKQA-LEAHR 100
                K  +    G + + WK A +  HR
Sbjct: 70  EPLHIKRRKVIKPGFIHSPWKSAYIRQHR 98

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 15 DRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCTFPVL 57
          D I++LP  +   I ++L  +D + +  +S+ W K       L
Sbjct: 4  DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL 46

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 18 SALPEPLLQHIMSFLPSKDAVRTRLLSKIW 47
           +LP+ LL  I S L   + ++   + K W
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRW 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	481
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.42
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.28
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.21
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.15
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.13
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.07
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.03
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.99
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.99
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.94
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.93
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.92
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.91
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.87
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.86
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.8
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.72
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.71
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.7
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.6
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.34
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.32
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.3
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.3
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.29
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.28
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.27
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.23
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.98
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.93
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.88
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.42
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.06
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.69
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.52
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.51
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.24
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.22
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.06
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.42

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=6.8e-15  Score=136.60  Aligned_cols=172  Identities=19%  Similarity=0.190  Sum_probs=91.3

Q ss_pred             CCCccEEEEcCeeccCC-CCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEe----ecCCCCC
Q 036097          162 SETVNVLDLFGCILLEF-PGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIK----LFGRSKL  236 (481)
Q Consensus       162 ~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~----i~~~~~L  236 (481)
                      ..+|++|++++|.+... ......++++|++|+|.++.+++..+.. +..+++|++|++++|.+++...    ..+|++|
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            44566666666554211 0112234556666666665555444443 3345566666665554443211    1123444


Q ss_pred             cEEEEccCCCCceEEEecCCccEEEEcCCCCCCce-eccCCCCCcEEEEE-----echhhhHHhhhcCCcccEEEecccc
Q 036097          237 RDIKIKGGREAEEVNINALNGHSITVVSPLPSGKI-NEVSCKNLKSLFLC-----ITSVVDETLSYHITRLVVLECLGLI  310 (481)
Q Consensus       237 ~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~-----~~~~~~~~~~~~~~~L~~L~L~~~~  310 (481)
                      ++|++++|..+...                 .... ....+++|+.|++.     +++..+..+..++|+|++|++++  
T Consensus       124 ~~L~ls~c~~~~~~-----------------~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~--  184 (284)
T d2astb2         124 DELNLSWCFDFTEK-----------------HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD--  184 (284)
T ss_dssp             CEEECCCCTTCCHH-----------------HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT--
T ss_pred             cccccccccccccc-----------------cchhhhcccccccchhhhccccccccccccccccccccccccccccc--
Confidence            44444444321100                 0011 11224555555554     45566777778888888888888  


Q ss_pred             ccccccccc----ccCCcccEEEecCCCCcccc----cccCCCcceeEeccc
Q 036097          311 VCFELQNIK----ISSPSLKRLEIFKCTKLAAV----EIETPNLSKCKYNGG  354 (481)
Q Consensus       311 ~c~~l~~l~----~~~~~L~~L~l~~c~~l~~~----~~~~p~L~~L~~~~~  354 (481)
                       |..+++..    ..+++|++|++++|..+.+-    ...+|+|++|++.|.
T Consensus       185 -~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         185 -SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             -CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             -ccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence             76665322    23678888888888776541    124577777777665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.3e-15  Score=137.94  Aligned_cols=174  Identities=16%  Similarity=0.237  Sum_probs=112.3

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecce-ecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQV-RASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~~p~L  214 (481)
                      .++++|+++.+  ......++..+..|++|++|+|++|.+.+........+++|++|++++| .+++..+..++.+||+|
T Consensus        46 ~~L~~LdLs~~--~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          46 FRVQHMDLSNS--VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             BCCCEEECTTC--EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCEEECCCC--ccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            47899988765  3344445555668999999999999764322223457899999999997 67888888888999999


Q ss_pred             ceeEeeeecCcceEee-----cCCCCCcEEEEccCC-CC-----ceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEE
Q 036097          215 EDLIFEFCEGLKSIKL-----FGRSKLRDIKIKGGR-EA-----EEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLF  283 (481)
Q Consensus       215 e~L~l~~~~~~~~l~i-----~~~~~L~~L~l~~~~-~~-----~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~  283 (481)
                      ++|++++|..+....+     ..+++|+.|++++|. .+     ..+...+|+|++|++++|..                
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~----------------  187 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM----------------  187 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT----------------
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccC----------------
Confidence            9999999976543211     124778888887763 11     11223456666666665411                


Q ss_pred             EEechhhhHHhhhcCCcccEEEeccccccccccccc----ccCCcccEEEecCC
Q 036097          284 LCITSVVDETLSYHITRLVVLECLGLIVCFELQNIK----ISSPSLKRLEIFKC  333 (481)
Q Consensus       284 l~~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~----~~~~~L~~L~l~~c  333 (481)
                        +++..+.. +..+++|++|++++   |..+++..    ..+|+|+.|++.+|
T Consensus       188 --itd~~~~~-l~~~~~L~~L~L~~---C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         188 --LKNDCFQE-FFQLNYLQHLSLSR---CYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             --CCGGGGGG-GGGCTTCCEEECTT---CTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             --CCchhhhh-hcccCcCCEEECCC---CCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              33333322 23466666666666   65554221    12466666666665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.28  E-value=7.3e-12  Score=120.74  Aligned_cols=288  Identities=13%  Similarity=0.087  Sum_probs=154.7

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      .++++|++..+  .  ...+. .+..+++|++|++++|.+.+++  ....+++|++|+++++.+.+-.   -++.+++|+
T Consensus        44 ~~l~~L~l~~~--~--I~~l~-gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~---~l~~l~~L~  113 (384)
T d2omza2          44 DQVTTLQADRL--G--IKSID-GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT---PLANLTNLT  113 (384)
T ss_dssp             TTCCEEECCSS--C--CCCCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG---GGTTCTTCC
T ss_pred             CCCCEEECCCC--C--CCCcc-ccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc---ccccccccc
Confidence            57888888765  2  22342 4567889999999999887765  3667899999999999886511   156788999


Q ss_pred             eeEeeeecCcceEeecCCCCCcEEEEccC-------------------------------------------C-CCceEE
Q 036097          216 DLIFEFCEGLKSIKLFGRSKLRDIKIKGG-------------------------------------------R-EAEEVN  251 (481)
Q Consensus       216 ~L~l~~~~~~~~l~i~~~~~L~~L~l~~~-------------------------------------------~-~~~~~~  251 (481)
                      .|++.++..-..........+..+....+                                           . ......
T Consensus       114 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (384)
T d2omza2         114 GLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL  193 (384)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence            99887653211000011111111111110                                           0 000011


Q ss_pred             EecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEE
Q 036097          252 INALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRL  328 (481)
Q Consensus       252 ~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L  328 (481)
                      ..+++++.+.++++..........+++|++|++.   +.+  + ..+..+++|+.|++.++.+ .++.. ...+++|+.|
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~l~~n~l-~~~~~-~~~~~~L~~L  268 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--I-GTLASLTNLTDLDLANNQI-SNLAP-LSGLTKLTEL  268 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCC-CCCGG-GTTCTTCSEE
T ss_pred             ccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCC--c-chhhcccccchhccccCcc-CCCCc-ccccccCCEe
Confidence            1245566666665522222234556666666655   211  1 2345667777777776221 11111 1224667777


Q ss_pred             EecCCCCcccc--cccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEEEEe
Q 036097          329 EIFKCTKLAAV--EIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLLSEC  406 (481)
Q Consensus       329 ~l~~c~~l~~~--~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~i~~  406 (481)
                      +++++. +..+  ....+.++.+....+.+.....  + ..+++++.+++..+.-     .++ ..+..+.+|++|++++
T Consensus       269 ~l~~~~-l~~~~~~~~~~~l~~l~~~~n~l~~~~~--~-~~~~~l~~L~ls~n~l-----~~l-~~l~~l~~L~~L~L~~  338 (384)
T d2omza2         269 KLGANQ-ISNISPLAGLTALTNLELNENQLEDISP--I-SNLKNLTYLTLYFNNI-----SDI-SPVSSLTKLQRLFFAN  338 (384)
T ss_dssp             ECCSSC-CCCCGGGTTCTTCSEEECCSSCCSCCGG--G-GGCTTCSEEECCSSCC-----SCC-GGGGGCTTCCEEECCS
T ss_pred             eccCcc-cCCCCccccccccccccccccccccccc--c-chhcccCeEECCCCCC-----CCC-cccccCCCCCEEECCC
Confidence            776643 2221  1234566666666554432211  1 3667777777755431     111 1133344444488886


Q ss_pred             eceeeechhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097          407 GESVIVPKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       407 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                      +....++ .     +..+++|++|+++.+.- .+      ++. ++++|+|+.|.|
T Consensus       339 n~l~~l~-~-----l~~l~~L~~L~l~~N~l-~~------l~~-l~~l~~L~~L~L  380 (384)
T d2omza2         339 NKVSDVS-S-----LANLTNINWLSAGHNQI-SD------LTP-LANLTRITQLGL  380 (384)
T ss_dssp             SCCCCCG-G-----GGGCTTCCEEECCSSCC-CB------CGG-GTTCTTCSEEEC
T ss_pred             CCCCCCh-h-----HcCCCCCCEEECCCCcC-CC------Chh-hccCCCCCEeeC
Confidence            6544444 2     33467888888877652 21      112 567888888876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.21  E-value=2.7e-11  Score=113.04  Aligned_cols=253  Identities=13%  Similarity=0.056  Sum_probs=141.3

Q ss_pred             cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEee
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKL  230 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i  230 (481)
                      ....+|..+.  +++++|+|++|.+..+++....++++|++|+++++.+..- ....+..++.|++|++++|. ++.+..
T Consensus        21 ~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i-~~~~f~~l~~L~~L~l~~n~-l~~l~~   96 (305)
T d1xkua_          21 GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQ-LKELPE   96 (305)
T ss_dssp             CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSC-CSBCCS
T ss_pred             CCCccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccccccc-chhhhhCCCccCEecccCCc-cCcCcc
Confidence            4566776653  6799999999999888766677889999999999877541 12236678999999998874 333322


Q ss_pred             cCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE----echhhhHHhhhcCCcccEEEe
Q 036097          231 FGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC----ITSVVDETLSYHITRLVVLEC  306 (481)
Q Consensus       231 ~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~----~~~~~~~~~~~~~~~L~~L~L  306 (481)
                      ...+.++.|.+.++... .+                  ....+.....+..+...    .........+..+++|+.+.+
T Consensus        97 ~~~~~l~~L~~~~n~l~-~l------------------~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l  157 (305)
T d1xkua_          97 KMPKTLQELRVHENEIT-KV------------------RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI  157 (305)
T ss_dssp             SCCTTCCEEECCSSCCC-BB------------------CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred             chhhhhhhhhccccchh-hh------------------hhhhhhccccccccccccccccccCCCccccccccccCcccc
Confidence            22356666666554311 00                  01112222333333322    011111233455666666666


Q ss_pred             cccccccccccc-cccCCcccEEEecCCCCccc---ccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhh
Q 036097          307 LGLIVCFELQNI-KISSPSLKRLEIFKCTKLAA---VEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQW  382 (481)
Q Consensus       307 ~~~~~c~~l~~l-~~~~~~L~~L~l~~c~~l~~---~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~  382 (481)
                      .+   +.. ..+ ...+++|++|++.++.....   ....++.++.|.++++.+.......+ ..+++|+.++++.+.  
T Consensus       158 ~~---n~l-~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~-~~l~~L~~L~L~~N~--  230 (305)
T d1xkua_         158 AD---TNI-TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL-ANTPHLRELHLNNNK--  230 (305)
T ss_dssp             CS---SCC-CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG-GGSTTCCEEECCSSC--
T ss_pred             cc---CCc-cccCcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccc-cccccceeeeccccc--
Confidence            66   321 112 12345677777766542221   22345667777766655443322222 256777777775543  


Q ss_pred             HHHHHHHHhhcccceeeEEEEEEeeceeeechhhhc--cCCCCCCCCceEEEEecc
Q 036097          383 YVKFIELIAKFHQWSKVLNLLSECGESVIVPKELRQ--ILPPPLSGVKHLNFSISI  436 (481)
Q Consensus       383 ~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~  436 (481)
                         +..++..+..+.+|+.|+++.+....+++..+.  .......+|+.|+|+.+.
T Consensus       231 ---L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         231 ---LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             ---CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ---ccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCc
Confidence               122334455566666688887765555543221  223445778888887664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.15  E-value=8.9e-11  Score=112.93  Aligned_cols=270  Identities=11%  Similarity=0.020  Sum_probs=173.0

Q ss_pred             HhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097          134 IESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL  213 (481)
Q Consensus       134 ~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  213 (481)
                      ..+++++|+++.+    ....++. +..+++|++|++++|.+.+.+  ....+++|+.|++.++.+.+...   ......
T Consensus        64 ~L~nL~~L~Ls~N----~l~~l~~-l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~~~~~~~~~~~~---~~~~~~  133 (384)
T d2omza2          64 YLNNLTQINFSNN----QLTDITP-LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDIDP---LKNLTN  133 (384)
T ss_dssp             GCTTCCEEECCSS----CCCCCGG-GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG---GTTCTT
T ss_pred             cCCCCCEEeCcCC----cCCCCcc-ccCCccccccccccccccccc--ccccccccccccccccccccccc---cccccc
Confidence            3478999999886    3444553 678999999999999987654  35688999999999887754211   112233


Q ss_pred             cceeEeeeec-------------------------------------------CcceEeecCCCCCcEEEEccCC--CCc
Q 036097          214 IEDLIFEFCE-------------------------------------------GLKSIKLFGRSKLRDIKIKGGR--EAE  248 (481)
Q Consensus       214 Le~L~l~~~~-------------------------------------------~~~~l~i~~~~~L~~L~l~~~~--~~~  248 (481)
                      +..+....+.                                           .........+++++.+.++++.  ...
T Consensus       134 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~  213 (384)
T d2omza2         134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT  213 (384)
T ss_dssp             CSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCC
Confidence            3333322210                                           0000011236888999888875  211


Q ss_pred             eEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccccccccCCcc
Q 036097          249 EVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSL  325 (481)
Q Consensus       249 ~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L  325 (481)
                      . ....++|++|+++++.-.....+..+++|+.|++.   +++  +. -+..+++|+.|+++++.+ ..+.. ....+.+
T Consensus       214 ~-~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~-~~~~~~~L~~L~l~~~~l-~~~~~-~~~~~~l  287 (384)
T d2omza2         214 P-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISN--LA-PLSGLTKLTELKLGANQI-SNISP-LAGLTAL  287 (384)
T ss_dssp             G-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC--CG-GGTTCTTCSEEECCSSCC-CCCGG-GTTCTTC
T ss_pred             c-ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCC--CC-cccccccCCEeeccCccc-CCCCc-ccccccc
Confidence            1 23468899999999844344467889999999977   332  11 256789999999988332 11111 2335678


Q ss_pred             cEEEecCCCCccc--ccccCCCcceeEecccccCCcchhhhhccCCCccEEEEeeChhhHHHHHHHHhhcccceeeEEEE
Q 036097          326 KRLEIFKCTKLAA--VEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINFDPQWYVKFIELIAKFHQWSKVLNLL  403 (481)
Q Consensus       326 ~~L~l~~c~~l~~--~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~~L~~l~~L~  403 (481)
                      +.+.+..+. +..  -....++++.|.++++.+.....  + ..+++|+++++..+. ..    .+ ..+.++.+|++|+
T Consensus       288 ~~l~~~~n~-l~~~~~~~~~~~l~~L~ls~n~l~~l~~--l-~~l~~L~~L~L~~n~-l~----~l-~~l~~l~~L~~L~  357 (384)
T d2omza2         288 TNLELNENQ-LEDISPISNLKNLTYLTLYFNNISDISP--V-SSLTKLQRLFFANNK-VS----DV-SSLANLTNINWLS  357 (384)
T ss_dssp             SEEECCSSC-CSCCGGGGGCTTCSEEECCSSCCSCCGG--G-GGCTTCCEEECCSSC-CC----CC-GGGGGCTTCCEEE
T ss_pred             ccccccccc-cccccccchhcccCeEECCCCCCCCCcc--c-ccCCCCCEEECCCCC-CC----CC-hhHcCCCCCCEEE
Confidence            888887754 332  23556889999998877664321  1 378999999997664 11    11 2345555566699


Q ss_pred             EEeeceeeechhhhccCCCCCCCCceEEEEec
Q 036097          404 SECGESVIVPKELRQILPPPLSGVKHLNFSIS  435 (481)
Q Consensus       404 i~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  435 (481)
                      ++++....+++      +..+++|+.|+|+.+
T Consensus       358 l~~N~l~~l~~------l~~l~~L~~L~L~~N  383 (384)
T d2omza2         358 AGHNQISDLTP------LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCSSCCCBCGG------GTTCTTCSEEECCCE
T ss_pred             CCCCcCCCChh------hccCCCCCEeeCCCC
Confidence            99886655552      455788999998653

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.3e-11  Score=76.69  Aligned_cols=36  Identities=25%  Similarity=0.348  Sum_probs=33.3

Q ss_pred             CCCCCHHHHHHHHcCCChhHHHhhhcccccchhhhc
Q 036097           17 ISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWC   52 (481)
Q Consensus        17 i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l~~   52 (481)
                      ++.||+||+.+||+||+.+|++++++|||+|+++..
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            468999999999999999999999999999998654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.07  E-value=3.1e-10  Score=100.89  Aligned_cols=59  Identities=17%  Similarity=0.181  Sum_probs=26.8

Q ss_pred             ccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeee
Q 036097          159 VVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFC  222 (481)
Q Consensus       159 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~  222 (481)
                      +..+++|++|++++|.+.+..  ....+++|++++++++.+++  +. -+..+++|+.+.++++
T Consensus        59 l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~--i~-~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTST  117 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTS
T ss_pred             HhcCCCCcEeecCCceeeccc--cccccccccccccccccccc--cc-cccccccccccccccc
Confidence            344555555555555543322  13344555555555544432  11 1234455555555444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.03  E-value=2.9e-10  Score=101.09  Aligned_cols=180  Identities=15%  Similarity=0.136  Sum_probs=132.2

Q ss_pred             cCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE-eecCCCCCcE
Q 036097          160 VCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-KLFGRSKLRD  238 (481)
Q Consensus       160 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-~i~~~~~L~~  238 (481)
                      ..+.+|++|++.+|.+.++.  ....+++|++|+++++.+.+-..   +..+++|+.+.+++|.. +.+ .+..+++|+.
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~ls~n~i~~~~~---l~~l~~l~~l~~~~n~~-~~i~~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNPL-KNVSAIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCCC-SCCGGGTTCTTCCE
T ss_pred             HHcCCcCEEECCCCCCCcch--hHhcCCCCcEeecCCceeecccc---ccccccccccccccccc-cccccccccccccc
Confidence            34678999999999887663  46689999999999998865211   67899999999998743 233 3556799999


Q ss_pred             EEEccCCCCceE-EEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccc
Q 036097          239 IKIKGGREAEEV-NINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFE  314 (481)
Q Consensus       239 L~l~~~~~~~~~-~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~  314 (481)
                      +.++.+...... ....+.+..+.++++.......+..+++|+.|.+.   +.+  . ..+.++++|+.|++++|.    
T Consensus       112 l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~-~~l~~l~~L~~L~Ls~n~----  184 (227)
T d1h6ua2         112 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD--L-TPLANLSKLTTLKADDNK----  184 (227)
T ss_dssp             EECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSC----
T ss_pred             cccccccccccchhccccchhhhhchhhhhchhhhhcccccccccccccccccc--c-hhhcccccceecccCCCc----
Confidence            999988622211 23467888888888754455567889999999987   222  1 225789999999999943    


Q ss_pred             ccccc--ccCCcccEEEecCCCCccccc--ccCCCcceeEecc
Q 036097          315 LQNIK--ISSPSLKRLEIFKCTKLAAVE--IETPNLSKCKYNG  353 (481)
Q Consensus       315 l~~l~--~~~~~L~~L~l~~c~~l~~~~--~~~p~L~~L~~~~  353 (481)
                      ++.+.  ..+++|++|++++| .+.++.  ..+++|+.|.+++
T Consensus       185 l~~l~~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         185 ISDISPLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCCGGGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred             cCCChhhcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEeeC
Confidence            33332  34689999999998 466654  4678999998764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.99  E-value=1.2e-09  Score=103.31  Aligned_cols=136  Identities=18%  Similarity=0.161  Sum_probs=90.5

Q ss_pred             HHHHhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcC
Q 036097          131 CYAIESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAG  210 (481)
Q Consensus       131 ~~~~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~  210 (481)
                      ......++++|+|+..    ....+|..   .++|++|++++|.+..+|.    .+.+|++|++.++.+..      +..
T Consensus        33 ~~c~~~~l~~LdLs~~----~L~~lp~~---~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~l~~n~l~~------l~~   95 (353)
T d1jl5a_          33 RDCLDRQAHELELNNL----GLSSLPEL---PPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKA------LSD   95 (353)
T ss_dssp             HHHHHHTCSEEECTTS----CCSCCCSC---CTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSC------CCS
T ss_pred             HHHHHcCCCEEEeCCC----CCCCCCCC---CCCCCEEECCCCCCccccc----chhhhhhhhhhhcccch------hhh
Confidence            3444468999998776    34567754   4789999999999877653    35789999999987643      122


Q ss_pred             C-CccceeEeeeecCcceE-eecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE
Q 036097          211 C-PLIEDLIFEFCEGLKSI-KLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC  285 (481)
Q Consensus       211 ~-p~Le~L~l~~~~~~~~l-~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~  285 (481)
                      . +.|++|++++|. +..+ ....+++|+.|++.++.. .......+.+..+.+..........+..++.++.+.+.
T Consensus        96 lp~~L~~L~L~~n~-l~~lp~~~~l~~L~~L~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~  170 (353)
T d1jl5a_          96 LPPLLEYLGVSNNQ-LEKLPELQNSSFLKIIDVDNNSL-KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYAD  170 (353)
T ss_dssp             CCTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECC
T ss_pred             hccccccccccccc-cccccchhhhccceeeccccccc-cccccccccccchhhccccccccccccccccceecccc
Confidence            3 469999999885 3332 344578999999987752 12222345666676665544444455666666666654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.99  E-value=3.7e-10  Score=105.58  Aligned_cols=107  Identities=20%  Similarity=0.244  Sum_probs=70.9

Q ss_pred             CeeEEEEEEeecCCcccccCCcccCCCCccEEEEcC-eeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          137 TVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFG-CILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       137 ~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      +|++|+|... .-.....+|..+.++++|++|+|++ +.+....+....++++|++|+|+++.+... ....+..++.|+
T Consensus        51 ~v~~L~L~~~-~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCC
T ss_pred             EEEEEECCCC-CCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc-ccccccchhhhc
Confidence            5788888775 1233446888888899999999986 455433334566788899999988876431 122355678888


Q ss_pred             eeEeeeecCcceE--eecCCCCCcEEEEccCC
Q 036097          216 DLIFEFCEGLKSI--KLFGRSKLRDIKIKGGR  245 (481)
Q Consensus       216 ~L~l~~~~~~~~l--~i~~~~~L~~L~l~~~~  245 (481)
                      .+++++|.....+  .+..+++++.+.++++.
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             ccccccccccccCchhhccCcccceeeccccc
Confidence            8888876432221  34456777777777664

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.95  E-value=2.7e-10  Score=106.59  Aligned_cols=195  Identities=13%  Similarity=0.012  Sum_probs=124.3

Q ss_pred             hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      .+++++|+|+.+  ..-...+|..+.++++|++|+|++|.+...+......++.|+.+++.++.+... +...+..++.|
T Consensus        75 L~~L~~L~Ls~~--N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~-~p~~l~~l~~L  151 (313)
T d1ogqa_          75 LPYLNFLYIGGI--NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNL  151 (313)
T ss_dssp             CTTCSEEEEEEE--TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTC
T ss_pred             Cccccccccccc--cccccccccccccccccchhhhccccccccccccccchhhhccccccccccccc-CchhhccCccc
Confidence            478999999875  234457999999999999999999998777666677899999999999876432 22336789999


Q ss_pred             ceeEeeeecCcceE--eecCCCCC-cEEEEccCCCCceE--EEecCCccEEEEcCC--CCCCceeccCCCCCcEEEEE--
Q 036097          215 EDLIFEFCEGLKSI--KLFGRSKL-RDIKIKGGREAEEV--NINALNGHSITVVSP--LPSGKINEVSCKNLKSLFLC--  285 (481)
Q Consensus       215 e~L~l~~~~~~~~l--~i~~~~~L-~~L~l~~~~~~~~~--~~~~p~L~~L~l~~~--~~~~~~~~~~~~~L~~L~l~--  285 (481)
                      ++++++++.....+  .+..+.++ +.+.++.+......  .........+++..+  .+..+..+..+++++.+++.  
T Consensus       152 ~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~  231 (313)
T d1ogqa_         152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             ceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999988533222  22233444 66666555310000  112233345555554  33345556677777777766  


Q ss_pred             -echhhhHHhhhcCCcccEEEecccccccccccccccCCcccEEEecCCC
Q 036097          286 -ITSVVDETLSYHITRLVVLECLGLIVCFELQNIKISSPSLKRLEIFKCT  334 (481)
Q Consensus       286 -~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~  334 (481)
                       +...  ...+..+++|+.|++++|++...+......+++|+.|+++++.
T Consensus       232 ~l~~~--~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~  279 (313)
T d1ogqa_         232 SLAFD--LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             EECCB--GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             ccccc--ccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCc
Confidence             2221  2234566778888887754433333333345777777777753

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.1e-09  Score=100.63  Aligned_cols=203  Identities=14%  Similarity=0.048  Sum_probs=108.6

Q ss_pred             cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE--
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI--  228 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l--  228 (481)
                      ....+|..+.  +++++|+|++|.+..++......+++|++|+++++.+..-. ......++.++++.+..+..+..+  
T Consensus        22 ~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~-~~~~~~~~~~~~l~~~~~~~~~~l~~   98 (284)
T d1ozna_          22 GLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDP   98 (284)
T ss_dssp             CCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred             CCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence            4456665543  56899999999998777666778899999999988775411 122456778888877655444433  


Q ss_pred             -eecCCCCCcEEEEccCCC--C-ceEEEecCCccEEEEcCC-CCCCceeccCCCCCcEEEEEechhhhHHhhhcCCcccE
Q 036097          229 -KLFGRSKLRDIKIKGGRE--A-EEVNINALNGHSITVVSP-LPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVV  303 (481)
Q Consensus       229 -~i~~~~~L~~L~l~~~~~--~-~~~~~~~p~L~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~  303 (481)
                       .+..+++|+.|+++++..  . .......++|+.++++++ ....                     ....+..+++|++
T Consensus        99 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i---------------------~~~~f~~~~~L~~  157 (284)
T d1ozna_          99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL---------------------PDDTFRDLGNLTH  157 (284)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------------CTTTTTTCTTCCE
T ss_pred             hhhcccccCCEEecCCcccccccccccchhcccchhhhcccccccc---------------------ChhHhccccchhh
Confidence             334456777777766641  1 111122445555555554 1111                     1122344455555


Q ss_pred             EEecccccccccccccccCCcccEEEecCCCCcc---cccccCCCcceeEecccccCCcchhhhhccCCCccEEEEee
Q 036097          304 LECLGLIVCFELQNIKISSPSLKRLEIFKCTKLA---AVEIETPNLSKCKYNGGVVPFSSSTALKLLETDLNLYTINF  378 (481)
Q Consensus       304 L~L~~~~~c~~l~~l~~~~~~L~~L~l~~c~~l~---~~~~~~p~L~~L~~~~~~~~~~~~~~l~~~~~~L~~l~l~~  378 (481)
                      |++++|.+-..-.......++|+.+++.++....   ......++|++|.++++.+.......+. .+++|+.+++..
T Consensus       158 L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~-~~~~L~~L~l~~  234 (284)
T d1ozna_         158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA-PLRALQYLRLND  234 (284)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT-TCTTCCEEECCS
T ss_pred             cccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccc-cccccCEEEecC
Confidence            5555522110001111223455555555533111   1223345666666666555444333333 566677666643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.5e-10  Score=112.10  Aligned_cols=343  Identities=12%  Similarity=0.027  Sum_probs=173.4

Q ss_pred             ceeEEEEEEEeeCChhhHHHHHHHHHhCCeeEEEEEEeecCCcc---cccCCcccCCCCccEEEEcCeeccCCC-----C
Q 036097          109 SVEKLRFKASFLDDSELADRCVCYAIESTVKELELHTILRGDRL---YHLPQMVVCSETVNVLDLFGCILLEFP-----G  180 (481)
Q Consensus       109 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~~l~~L~L~~~~~~~~~---~~l~~~~~~~~~L~~L~L~~~~~~~~~-----~  180 (481)
                      .++.+.+.+. ......+..++.  ..++++.|+|..+  ....   ..+...+..+++|++|+|++|.+.+..     .
T Consensus         3 ~l~~ld~~~~-~i~~~~~~~l~~--~l~~l~~L~L~~~--~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~   77 (460)
T d1z7xw1           3 DIQSLDIQCE-ELSDARWAELLP--LLQQCQVVRLDDC--GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEEESC-CCCHHHHHHHHH--HHTTCSEEEEESS--CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCCEEEeeCC-cCChHHHHHHHH--hCCCCCEEEeCCC--CCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHH
Confidence            3788888755 333344444442  3478999999987  3322   344555678999999999999774210     0


Q ss_pred             CCCcCCCcceEEEecceecChHH---HHHHhcCCCccceeEeeeecCcc------------------eEee---------
Q 036097          181 RNSVKLPSLRKLRLAQVRASDQV---IENLVAGCPLIEDLIFEFCEGLK------------------SIKL---------  230 (481)
Q Consensus       181 ~~~~~~~~L~~L~L~~~~~~~~~---l~~l~~~~p~Le~L~l~~~~~~~------------------~l~i---------  230 (481)
                      ......++|++|+|++|.+++..   +...+..+++|++|++++|.--.                  ....         
T Consensus        78 ~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  157 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS  157 (460)
T ss_dssp             TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhh
Confidence            01123457999999999987743   44556789999999998874100                  0000         


Q ss_pred             --------cCCCCCcEEEEccCCCCce--------EEEecCCccEEEEcCCCCC------CceeccCCCCCcEEEEE---
Q 036097          231 --------FGRSKLRDIKIKGGREAEE--------VNINALNGHSITVVSPLPS------GKINEVSCKNLKSLFLC---  285 (481)
Q Consensus       231 --------~~~~~L~~L~l~~~~~~~~--------~~~~~p~L~~L~l~~~~~~------~~~~~~~~~~L~~L~l~---  285 (481)
                              .....++.+.++.+.....        +.........+...++...      ....+...+.++.+.+.   
T Consensus       158 ~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~  237 (460)
T d1z7xw1         158 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK  237 (460)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             hcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcc
Confidence                    0135666666665541100        0011223455655555211      11234456667777765   


Q ss_pred             echh----hhHHhhhcCCcccEEEecccccccccc-------cccccCCcccEEEecCCCCccc---------ccccCCC
Q 036097          286 ITSV----VDETLSYHITRLVVLECLGLIVCFELQ-------NIKISSPSLKRLEIFKCTKLAA---------VEIETPN  345 (481)
Q Consensus       286 ~~~~----~~~~~~~~~~~L~~L~L~~~~~c~~l~-------~l~~~~~~L~~L~l~~c~~l~~---------~~~~~p~  345 (481)
                      +.+.    .........+.++.|++++   |....       ......+.++.+++++++ +.+         +....+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~l~~l~l~~---n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~-i~~~~~~~l~~~l~~~~~~  313 (460)
T d1z7xw1         238 LGDVGMAELCPGLLHPSSRLRTLWIWE---CGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQ  313 (460)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTT---SCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCC
T ss_pred             ccccccchhhccccccccccccccccc---cccccccccccccccccccccccccccccc-ccccccchhhccccccccc
Confidence            2221    2223344566777777777   32211       011124566666666643 221         1223346


Q ss_pred             cceeEecccccCCcchhhh---hccCCCccEEEEeeChhhHHHHHHHHhhcc-cceeeEEEEEEeeceeeec-hhhhccC
Q 036097          346 LSKCKYNGGVVPFSSSTAL---KLLETDLNLYTINFDPQWYVKFIELIAKFH-QWSKVLNLLSECGESVIVP-KELRQIL  420 (481)
Q Consensus       346 L~~L~~~~~~~~~~~~~~l---~~~~~~L~~l~l~~~~~~~~~~~~~~~~l~-~L~~l~~L~i~~~~~~~~~-~~~~~~~  420 (481)
                      |+.+.+.++.+.......+   ...+++|++++++.+.--...+..+...+. ..+.|++|+++++...... ..+. ..
T Consensus       314 L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~-~~  392 (460)
T d1z7xw1         314 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLA-AT  392 (460)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHH-HH
T ss_pred             cccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHH-HH
Confidence            6666666655543322222   124556777766554322222333333332 1233344666644322100 0000 01


Q ss_pred             CCCCCCCceEEEEecccchhhhHHHHHhhhhhcCcccceEEE
Q 036097          421 PPPLSGVKHLNFSISIPFKKFAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       421 ~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                      +...++|++|+|+.+. +++.++..+...+-.+..+|++|.+
T Consensus       393 l~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~~~~~L~~l~l  433 (460)
T d1z7xw1         393 LLANHSLRELDLSNNC-LGDAGILQLVESVRQPGCLLEQLVL  433 (460)
T ss_dssp             HHHCCCCCEEECCSSS-CCHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             HhcCCCCCEEECCCCc-CCHHHHHHHHHHHHhCCCccCEEEC
Confidence            2223567777776553 2222223333333334446666666

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.93  E-value=1.7e-09  Score=100.59  Aligned_cols=79  Identities=11%  Similarity=0.100  Sum_probs=56.3

Q ss_pred             CCeeEEEEEEeecCCcccccCC-cccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHLPQ-MVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      ++++.|+++.+    ...++|. .+.++++|++|++++|.+...++.....++.|++|++.++++..  +.  ....+.+
T Consensus        31 ~~l~~L~Ls~N----~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~--l~--~~~~~~l  102 (305)
T d1xkua_          31 PDTALLDLQNN----KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LP--EKMPKTL  102 (305)
T ss_dssp             TTCCEEECCSS----CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CC--SSCCTTC
T ss_pred             CCCCEEECcCC----cCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc--Cc--cchhhhh
Confidence            57888887765    4567776 35578899999999988877765566778899999998887643  11  1234567


Q ss_pred             ceeEeeee
Q 036097          215 EDLIFEFC  222 (481)
Q Consensus       215 e~L~l~~~  222 (481)
                      +.|.+..+
T Consensus       103 ~~L~~~~n  110 (305)
T d1xkua_         103 QELRVHEN  110 (305)
T ss_dssp             CEEECCSS
T ss_pred             hhhhcccc
Confidence            77777655

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.92  E-value=1.1e-09  Score=95.02  Aligned_cols=58  Identities=10%  Similarity=0.068  Sum_probs=26.6

Q ss_pred             cCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeee
Q 036097          160 VCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFC  222 (481)
Q Consensus       160 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~  222 (481)
                      ..+++|++|++++|.+.+.+  ....+++|++|+++++.+..-.   -+..++.|++|+++++
T Consensus        59 ~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          59 EYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT---PLANLTNLTGLTLFNN  116 (199)
T ss_dssp             GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG---GGTTCTTCSEEECCSS
T ss_pred             ccCCCcCcCccccccccCcc--cccCCccccccccccccccccc---cccccccccccccccc
Confidence            34555555555555544332  1334555555555555442200   0334455555555444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.4e-09  Score=97.41  Aligned_cols=66  Identities=18%  Similarity=0.280  Sum_probs=35.8

Q ss_pred             ccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeee
Q 036097          152 LYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFC  222 (481)
Q Consensus       152 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~  222 (481)
                      ...+|..+.  +++++|+|++|.+..++......+++|++|+|++|.++.  +. ....+++|++|++++|
T Consensus        22 L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          22 LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQ-VDGTLPVLGTLDLSHN   87 (266)
T ss_dssp             CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EE-CCSCCTTCCEEECCSS
T ss_pred             CCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--cc-cccccccccccccccc
Confidence            345554432  456677777766655544444556666666666665543  11 0234555666665555

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.1e-09  Score=99.88  Aligned_cols=186  Identities=11%  Similarity=-0.012  Sum_probs=115.1

Q ss_pred             CCccEEEEcCeeccCCCCCCCcCC-CcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEe-ecCCCCCcEEE
Q 036097          163 ETVNVLDLFGCILLEFPGRNSVKL-PSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIK-LFGRSKLRDIK  240 (481)
Q Consensus       163 ~~L~~L~L~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~-i~~~~~L~~L~  240 (481)
                      ..+...+-+++.+..+|.    .+ ++|++|+|+++.+..-. ...+..+++|++|++++|. ++.+. ...+++|+.|+
T Consensus        10 ~~~~~v~C~~~~L~~iP~----~lp~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPP----DLPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCSSCCS----CCCTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEE
T ss_pred             CCCeEEEccCCCCCeeCc----CcCcCCCEEECcCCcCCCcC-HHHhhcccccccccccccc-ccccccccccccccccc
Confidence            344555666666655543    22 46888888888775411 1235678888888888774 44442 34568888888


Q ss_pred             EccCC--CCceEEEecCCccEEEEcCCC--CCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEeccccccc
Q 036097          241 IKGGR--EAEEVNINALNGHSITVVSPL--PSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCF  313 (481)
Q Consensus       241 l~~~~--~~~~~~~~~p~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~  313 (481)
                      ++++.  .........++|+.|+++++.  .-....+..+++++.|.+.   +. ......+..+++|+.|++++|++..
T Consensus        84 Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             cccccccccccccccccccccccccccccceeeccccccccccccccccccccc-eeccccccccccchhcccccccccc
Confidence            88775  222233456788888888772  2234456677788888765   11 1123445678888999988854322


Q ss_pred             ccccccccCCcccEEEecCCCCccccc---ccCCCcceeEeccccc
Q 036097          314 ELQNIKISSPSLKRLEIFKCTKLAAVE---IETPNLSKCKYNGGVV  356 (481)
Q Consensus       314 ~l~~l~~~~~~L~~L~l~~c~~l~~~~---~~~p~L~~L~~~~~~~  356 (481)
                      .-.......++|++|+++++. +..++   ...++|+.|.+.|++.
T Consensus       163 ~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         163 LPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             cCccccccccccceeecccCC-CcccChhHCCCCCCCEEEecCCCC
Confidence            212223346788999998854 55543   3457888888888654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.87  E-value=1.5e-09  Score=94.26  Aligned_cols=156  Identities=13%  Similarity=0.085  Sum_probs=112.1

Q ss_pred             CCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEeecCCCCCcEEE
Q 036097          161 CSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIKLFGRSKLRDIK  240 (481)
Q Consensus       161 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~i~~~~~L~~L~  240 (481)
                      .++++++|+++++.+..+.  ....+++|++|+++++++++-.  . +.++++|++|++++|....--.+..+++|+.|.
T Consensus        38 ~l~~l~~L~l~~~~i~~l~--~l~~l~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~  112 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQIADITPLANLTNLTGLT  112 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEE
T ss_pred             HhcCCCEEECCCCCCCCcc--ccccCCCcCcCccccccccCcc--c-ccCCccccccccccccccccccccccccccccc
Confidence            3578899999999886653  4567899999999999886621  1 678999999999988533222456789999999


Q ss_pred             EccCCCCc-eEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHHhhhcCCcccEEEecccccccccc
Q 036097          241 IKGGREAE-EVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDETLSYHITRLVVLECLGLIVCFELQ  316 (481)
Q Consensus       241 l~~~~~~~-~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~  316 (481)
                      ++++.... .....+++|+.|+++++.-.....+..+++|+.|++.   +++  +. .+.++++|+.|++++|+    ++
T Consensus       113 l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~--l~-~l~~l~~L~~L~ls~N~----i~  185 (199)
T d2omxa2         113 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD--LK-PLANLTTLERLDISSNK----VS  185 (199)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC--CG-GGTTCTTCCEEECCSSC----CC
T ss_pred             ccccccccccccchhhhhHHhhhhhhhhcccccccccccccccccccccccC--Cc-cccCCCCCCEEECCCCC----CC
Confidence            99887222 1123578999999998843334458899999999987   332  22 36789999999999943    33


Q ss_pred             ccc--ccCCcccEE
Q 036097          317 NIK--ISSPSLKRL  328 (481)
Q Consensus       317 ~l~--~~~~~L~~L  328 (481)
                      .+.  ..+++|+.|
T Consensus       186 ~i~~l~~L~~L~~L  199 (199)
T d2omxa2         186 DISVLAKLTNLESL  199 (199)
T ss_dssp             CCGGGGGCTTCSEE
T ss_pred             CCccccCCCCCCcC
Confidence            332  235666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.86  E-value=1.4e-09  Score=95.20  Aligned_cols=157  Identities=16%  Similarity=0.118  Sum_probs=83.7

Q ss_pred             CeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccce
Q 036097          137 TVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIED  216 (481)
Q Consensus       137 ~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~  216 (481)
                      .+++|++..+    ....++ .+..+++|++|++++|.+.+.+  ....+++|++|+++++++++  +. -+..+++|+.
T Consensus        47 ~L~~L~l~~~----~i~~l~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~  116 (210)
T d1h6ta2          47 SIDQIIANNS----DIKSVQ-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKS  116 (210)
T ss_dssp             TCCEEECTTS----CCCCCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCE
T ss_pred             CccEEECcCC----CCCCch-hHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccc--cc-cccccccccc
Confidence            5666666554    222233 2456777888888877775544  23467777777777777654  11 1456777777


Q ss_pred             eEeeeecCcceEeecCCCCCcEEEEccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEE---echhhhHH
Q 036097          217 LIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLC---ITSVVDET  293 (481)
Q Consensus       217 L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~---~~~~~~~~  293 (481)
                      |++.+|.....-.+..+++++.+.+..+.                     -.....+..+++|+.++++   +++  +. 
T Consensus       117 L~l~~~~~~~~~~l~~l~~l~~l~~~~n~---------------------l~~~~~~~~l~~L~~l~l~~n~l~~--i~-  172 (210)
T d1h6ta2         117 LSLEHNGISDINGLVHLPQLESLYLGNNK---------------------ITDITVLSRLTKLDTLSLEDNQISD--IV-  172 (210)
T ss_dssp             EECTTSCCCCCGGGGGCTTCCEEECCSSC---------------------CCCCGGGGGCTTCSEEECCSSCCCC--CG-
T ss_pred             ccccccccccccccccccccccccccccc---------------------ccccccccccccccccccccccccc--cc-
Confidence            77776642211123334555555554443                     1122234445555555544   211  11 


Q ss_pred             hhhcCCcccEEEeccccccccccccc--ccCCcccEEEec
Q 036097          294 LSYHITRLVVLECLGLIVCFELQNIK--ISSPSLKRLEIF  331 (481)
Q Consensus       294 ~~~~~~~L~~L~L~~~~~c~~l~~l~--~~~~~L~~L~l~  331 (481)
                      -+.++++|++|++++|+    ++.+.  ..+++|+.|+++
T Consensus       173 ~l~~l~~L~~L~Ls~N~----i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         173 PLAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             GGTTCTTCCEEECCSSC----CCBCGGGTTCTTCSEEEEE
T ss_pred             cccCCCCCCEEECCCCC----CCCChhhcCCCCCCEEEcc
Confidence            14566777777777632    22221  234667777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.85  E-value=3.4e-09  Score=92.76  Aligned_cols=162  Identities=17%  Similarity=0.123  Sum_probs=106.7

Q ss_pred             CCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE-eecCCCCCcEEE
Q 036097          162 SETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-KLFGRSKLRDIK  240 (481)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-~i~~~~~L~~L~  240 (481)
                      +.+|++|++++|.+....  ....+++|++|+++++.+++-.  . +..+++|++|++++|. ++.+ .+..+++     
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~l~--~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~-----  113 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENK-VKDLSSLKDLKK-----  113 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCGGGGTTCTT-----
T ss_pred             hcCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccCcc--c-cccCcccccccccccc-cccccccccccc-----
Confidence            568999999999886654  3567899999999999886511  1 4678889999998774 2222 1233344     


Q ss_pred             EccCCCCceEEEecCCccEEEEcCCCCCCceeccCCCCCcEEEEEechhhhHHhhhcCCcccEEEecccccccccccccc
Q 036097          241 IKGGREAEEVNINALNGHSITVVSPLPSGKINEVSCKNLKSLFLCITSVVDETLSYHITRLVVLECLGLIVCFELQNIKI  320 (481)
Q Consensus       241 l~~~~~~~~~~~~~p~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~L~~~~~c~~l~~l~~  320 (481)
                                      |+.|++.++.......+..+++++.+.+....-.-......+++|+.+++++|.+. .+.. ..
T Consensus       114 ----------------L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~-~i~~-l~  175 (210)
T d1h6ta2         114 ----------------LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIVP-LA  175 (210)
T ss_dssp             ----------------CCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC-CCGG-GT
T ss_pred             ----------------cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc-cc
Confidence                            45555544432233357778888888876111111234567899999999995432 1222 23


Q ss_pred             cCCcccEEEecCCCCccccc--ccCCCcceeEecc
Q 036097          321 SSPSLKRLEIFKCTKLAAVE--IETPNLSKCKYNG  353 (481)
Q Consensus       321 ~~~~L~~L~l~~c~~l~~~~--~~~p~L~~L~~~~  353 (481)
                      .+++|++|++++|. ++++.  ...++|+.|.+++
T Consensus       176 ~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         176 GLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELFS  209 (210)
T ss_dssp             TCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEEE
T ss_pred             CCCCCCEEECCCCC-CCCChhhcCCCCCCEEEccC
Confidence            46899999999874 65543  3568999998865

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.2e-09  Score=100.60  Aligned_cols=145  Identities=16%  Similarity=0.144  Sum_probs=91.8

Q ss_pred             CCeeEEEEEEeecCCcccccCCc-ccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecce-ecChHHHHHHhcCCCc
Q 036097          136 STVKELELHTILRGDRLYHLPQM-VVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQV-RASDQVIENLVAGCPL  213 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~~p~  213 (481)
                      .++++|+|+.+    ....+|.. +..+++|++|+++++.+..++......++.++.+..... .+.. .....+..+++
T Consensus        32 ~~~~~L~Ls~N----~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~-l~~~~~~~l~~  106 (284)
T d1ozna_          32 AASQRIFLHGN----RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS-VDPATFHGLGR  106 (284)
T ss_dssp             TTCSEEECTTS----CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCC-CCTTTTTTCTT
T ss_pred             CCCCEEECcCC----cCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccccc-ccchhhccccc
Confidence            57889988876    34566754 567899999999999987776666667788888876543 2222 11223678899


Q ss_pred             cceeEeeeecCc--ceEeecCCCCCcEEEEccCC--CC-ceEEEecCCccEEEEcCCCCC--CceeccCCCCCcEEEEE
Q 036097          214 IEDLIFEFCEGL--KSIKLFGRSKLRDIKIKGGR--EA-EEVNINALNGHSITVVSPLPS--GKINEVSCKNLKSLFLC  285 (481)
Q Consensus       214 Le~L~l~~~~~~--~~l~i~~~~~L~~L~l~~~~--~~-~~~~~~~p~L~~L~l~~~~~~--~~~~~~~~~~L~~L~l~  285 (481)
                      |++|+++++...  .......+.+|+.+.+.++.  .. .......++|+.|+++++.-.  .+..+..+++|+.+.+.
T Consensus       107 L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~  185 (284)
T d1ozna_         107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (284)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhh
Confidence            999999987532  11223345889999998875  11 111224567777777776211  12233444444444443

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=1.1e-09  Score=83.45  Aligned_cols=40  Identities=25%  Similarity=0.399  Sum_probs=36.7

Q ss_pred             CccCCCCCHHHHHHHHcCCChhHHHhhhcccccchhhhcc
Q 036097           14 ADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAWCT   53 (481)
Q Consensus        14 ~d~i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l~~~   53 (481)
                      .|.|+.||+||+.+||+||+++|++++++|||+|+++...
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~   42 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   42 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHT
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Confidence            5889999999999999999999999999999999975543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.6e-09  Score=106.12  Aligned_cols=318  Identities=15%  Similarity=0.081  Sum_probs=173.7

Q ss_pred             CeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCC----CCCCcCCCcceEEEecceecChHHHHHHhc---
Q 036097          137 TVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFP----GRNSVKLPSLRKLRLAQVRASDQVIENLVA---  209 (481)
Q Consensus       137 ~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~----~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~---  209 (481)
                      +|++|+++..  ......+...+..+++++.|+|++|.+.+..    ......+++|++|+|+++.+++..+..+..   
T Consensus         3 ~l~~ld~~~~--~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           3 DIQSLDIQCE--ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEESC--CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCEEEeeCC--cCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            5788888765  4444444555556788889999988764211    011246788999999988887755555443   


Q ss_pred             -CCCccceeEeeeecCcce-----E--eecCCCCCcEEEEccCCCC----ce--------------EEE-----------
Q 036097          210 -GCPLIEDLIFEFCEGLKS-----I--KLFGRSKLRDIKIKGGREA----EE--------------VNI-----------  252 (481)
Q Consensus       210 -~~p~Le~L~l~~~~~~~~-----l--~i~~~~~L~~L~l~~~~~~----~~--------------~~~-----------  252 (481)
                       ..+.|++|++++|. ++.     +  .+..+++|++|+++++..-    ..              ...           
T Consensus        81 ~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  159 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE  159 (460)
T ss_dssp             STTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             cCCCCCCEEECCCCC-ccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhc
Confidence             34578999998874 322     1  2334688888888876410    00              000           


Q ss_pred             -------ecCCccEEEEcCCCCCCc---e---ec-cCCCCCcEEEEE---ech---hhhHHhhhcCCcccEEEecccccc
Q 036097          253 -------NALNGHSITVVSPLPSGK---I---NE-VSCKNLKSLFLC---ITS---VVDETLSYHITRLVVLECLGLIVC  312 (481)
Q Consensus       253 -------~~p~L~~L~l~~~~~~~~---~---~~-~~~~~L~~L~l~---~~~---~~~~~~~~~~~~L~~L~L~~~~~c  312 (481)
                             ..+.++.+.++++.....   .   .+ ..-.....+.+.   +..   ..........+.++.+.+.++...
T Consensus       160 ~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~  239 (460)
T d1z7xw1         160 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  239 (460)
T ss_dssp             HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccc
Confidence                   012233333333211000   0   00 011122233322   111   112234456677788887773321


Q ss_pred             c-----ccccccccCCcccEEEecCCCCccc-------ccccCCCcceeEecccccCCcchhh----hhccCCCccEEEE
Q 036097          313 F-----ELQNIKISSPSLKRLEIFKCTKLAA-------VEIETPNLSKCKYNGGVVPFSSSTA----LKLLETDLNLYTI  376 (481)
Q Consensus       313 ~-----~l~~l~~~~~~L~~L~l~~c~~l~~-------~~~~~p~L~~L~~~~~~~~~~~~~~----l~~~~~~L~~l~l  376 (481)
                      .     .........+.++.+++++|.....       .....+.++.+.++++.+.......    +......|+.+.+
T Consensus       240 ~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l  319 (460)
T d1z7xw1         240 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV  319 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             ccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccc
Confidence            1     1112223356899999998763221       1234678999998887765433322    2234467888888


Q ss_pred             eeCh---hhHHHHHHHHhhcccceeeEEEEEEeeceeee-chhhhccCCCCCCCCceEEEEecccchhhhHHHHHhhhhh
Q 036097          377 NFDP---QWYVKFIELIAKFHQWSKVLNLLSECGESVIV-PKELRQILPPPLSGVKHLNFSISIPFKKFAIAQVVDGLLW  452 (481)
Q Consensus       377 ~~~~---~~~~~~~~~~~~l~~L~~l~~L~i~~~~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~ll~  452 (481)
                      ..+.   .....+..+....+.|+.   |+++++..... ...+..........|++|+|+.+. +++.+ ...+...+.
T Consensus       320 ~~~~l~~~~~~~l~~~~~~~~~L~~---L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~-i~~~~-~~~l~~~l~  394 (460)
T d1z7xw1         320 KSCSFTAACCSHFSSVLAQNRFLLE---LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSS-CSSLAATLL  394 (460)
T ss_dssp             TTSCCBGGGHHHHHHHHHHCSSCCE---EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHH-HHHHHHHHH
T ss_pred             cccchhhhhhhhcccccccccchhh---hheeeecccCcccchhhhhhhcccCCCCEEECCCCC-CChHH-HHHHHHHHh
Confidence            5544   222334455555555555   99987653210 111111111224679999998885 33332 334555678


Q ss_pred             cCcccceEEE
Q 036097          453 MSPHVDTVTI  462 (481)
Q Consensus       453 ~~p~L~~L~l  462 (481)
                      .+|+|++|+|
T Consensus       395 ~~~~L~~L~L  404 (460)
T d1z7xw1         395 ANHSLRELDL  404 (460)
T ss_dssp             HCCCCCEEEC
T ss_pred             cCCCCCEEEC
Confidence            8999999999

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=3.6e-09  Score=80.93  Aligned_cols=38  Identities=32%  Similarity=0.467  Sum_probs=36.0

Q ss_pred             CccCCCCCHHHHHHHHcCCChhHHHhhhcccccchhhh
Q 036097           14 ADRISALPEPLLQHIMSFLPSKDAVRTRLLSKIWEKAW   51 (481)
Q Consensus        14 ~d~i~~LPd~iL~~Ils~L~~~d~~r~~~vskrW~~l~   51 (481)
                      .|.|+.||+||+.+||+||+++|+++++.|||+|+.+.
T Consensus        16 ~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~   53 (102)
T d2ovrb1          16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILA   53 (102)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred             cCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999754

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=3e-07  Score=81.76  Aligned_cols=92  Identities=13%  Similarity=0.161  Sum_probs=54.3

Q ss_pred             cccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEe-
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIK-  229 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~-  229 (481)
                      ....+|..+.  +++++|+|+++.+..++.....++++|++|+++++.+....-...+..++.++++.+..+..+.... 
T Consensus        19 ~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~   96 (242)
T d1xwdc1          19 KVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP   96 (242)
T ss_dssp             SCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT
T ss_pred             CCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccc
Confidence            3446665543  4788888888888666654556788888888887755331111124567777777776554443332 


Q ss_pred             --ecCCCCCcEEEEccC
Q 036097          230 --LFGRSKLRDIKIKGG  244 (481)
Q Consensus       230 --i~~~~~L~~L~l~~~  244 (481)
                        +.++++|+.+.+.++
T Consensus        97 ~~~~~l~~L~~l~l~~~  113 (242)
T d1xwdc1          97 EAFQNLPNLQYLLISNT  113 (242)
T ss_dssp             TSEECCTTCCEEEEESC
T ss_pred             ccccccccccccccchh
Confidence              233455555555444

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.48  E-value=3e-07  Score=86.31  Aligned_cols=114  Identities=13%  Similarity=0.028  Sum_probs=68.9

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      +++++|+++.+    ....+|..   ..+|+.|+++++.+..++.    -.+.|++|+++++.+..  +.. ...+++|+
T Consensus        58 ~~L~~L~Ls~N----~l~~lp~~---~~~L~~L~l~~n~l~~l~~----lp~~L~~L~L~~n~l~~--lp~-~~~l~~L~  123 (353)
T d1jl5a_          58 PHLESLVASCN----SLTELPEL---PQSLKSLLVDNNNLKALSD----LPPLLEYLGVSNNQLEK--LPE-LQNSSFLK  123 (353)
T ss_dssp             TTCSEEECCSS----CCSSCCCC---CTTCCEEECCSSCCSCCCS----CCTTCCEEECCSSCCSS--CCC-CTTCTTCC
T ss_pred             CCCCEEECCCC----CCcccccc---hhhhhhhhhhhcccchhhh----hcccccccccccccccc--ccc-hhhhccce
Confidence            68999988765    44467754   4689999999998755432    12469999999998754  111 35688999


Q ss_pred             eeEeeeecCcceEeecCCCCCcEEEEccCCCCceE-EEecCCccEEEEcCC
Q 036097          216 DLIFEFCEGLKSIKLFGRSKLRDIKIKGGREAEEV-NINALNGHSITVVSP  265 (481)
Q Consensus       216 ~L~l~~~~~~~~l~i~~~~~L~~L~l~~~~~~~~~-~~~~p~L~~L~l~~~  265 (481)
                      +|+++++..... .. ....+..+.+..+...... ....+.++.+.+.++
T Consensus       124 ~L~l~~~~~~~~-~~-~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n  172 (353)
T d1jl5a_         124 IIDVDNNSLKKL-PD-LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN  172 (353)
T ss_dssp             EEECCSSCCSCC-CC-CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             eecccccccccc-cc-ccccccchhhccccccccccccccccceecccccc
Confidence            999987742211 11 1245555555444311111 112445555555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.34  E-value=8.1e-08  Score=90.50  Aligned_cols=87  Identities=14%  Similarity=0.187  Sum_probs=42.8

Q ss_pred             CCeeEEEEEEee-cCCcccccCCcccCCCCccEEEEcCeeccCCCCC----------CCcCCCcceEEEecceecCh---
Q 036097          136 STVKELELHTIL-RGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGR----------NSVKLPSLRKLRLAQVRASD---  201 (481)
Q Consensus       136 ~~l~~L~L~~~~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~----------~~~~~~~L~~L~L~~~~~~~---  201 (481)
                      ..+++|+|+.+. .......+...+...++|+.|+++++........          ....+++|+.|+|++|.+++   
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  110 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  110 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccc
Confidence            456666655431 0111122333344556666666665543211100          11235666667776666554   


Q ss_pred             HHHHHHhcCCCccceeEeeee
Q 036097          202 QVIENLVAGCPLIEDLIFEFC  222 (481)
Q Consensus       202 ~~l~~l~~~~p~Le~L~l~~~  222 (481)
                      ..+...+..+++|++|++++|
T Consensus       111 ~~l~~~l~~~~~L~~L~l~~n  131 (344)
T d2ca6a1         111 EPLIDFLSKHTPLEHLYLHNN  131 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSS
T ss_pred             cchhhhhcccccchheecccc
Confidence            233344456667777777665

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=4.9e-08  Score=76.47  Aligned_cols=38  Identities=32%  Similarity=0.572  Sum_probs=34.8

Q ss_pred             CccCCCCC----HHHHHHHHcCCChhHHHhhhcccccchhhh
Q 036097           14 ADRISALP----EPLLQHIMSFLPSKDAVRTRLLSKIWEKAW   51 (481)
Q Consensus        14 ~d~i~~LP----d~iL~~Ils~L~~~d~~r~~~vskrW~~l~   51 (481)
                      .|.|+.||    |||+.+||+||+++|++++++|||+|+++.
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~   49 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVT   49 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHH
T ss_pred             ccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            58889998    599999999999999999999999998743

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=6.2e-08  Score=80.58  Aligned_cols=80  Identities=10%  Similarity=0.079  Sum_probs=44.2

Q ss_pred             cCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceEe---ecCCCCC
Q 036097          160 VCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSIK---LFGRSKL  236 (481)
Q Consensus       160 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l~---i~~~~~L  236 (481)
                      .++.++++|+|++|.+..++. ....+++|+.|+|++|.+..  +. -+..+++|++|++++|. +..+.   ...+++|
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~-~~~~l~~L~~L~Ls~N~i~~--l~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRK--LD-GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL   89 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCE--EC-CCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred             cCcCcCcEEECCCCCCCccCc-cccccccCCEEECCCCCCCc--cC-CcccCcchhhhhccccc-ccCCCcccccccccc
Confidence            355667777777777765542 33456777777777776643  11 14556666677666664 22221   1223555


Q ss_pred             cEEEEccC
Q 036097          237 RDIKIKGG  244 (481)
Q Consensus       237 ~~L~l~~~  244 (481)
                      +.|++++|
T Consensus        90 ~~L~L~~N   97 (162)
T d1a9na_          90 TELILTNN   97 (162)
T ss_dssp             CEEECCSC
T ss_pred             ccceeccc
Confidence            55555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=8.8e-08  Score=79.61  Aligned_cols=79  Identities=15%  Similarity=0.140  Sum_probs=52.4

Q ss_pred             CcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE-eecCCCCCcEEEEccCCCCceE----EEecCCc
Q 036097          183 SVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-KLFGRSKLRDIKIKGGREAEEV----NINALNG  257 (481)
Q Consensus       183 ~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-~i~~~~~L~~L~l~~~~~~~~~----~~~~p~L  257 (481)
                      ...+.+|++|+|++++++.  +..+...+++|+.|++++|. +..+ .+..+++|+.|++++|.. ..+    ...+|+|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~--i~~~~~~l~~L~~L~Ls~N~-i~~l~~~~~l~~L~~L~ls~N~i-~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCCc--cCccccccccCCEEECCCCC-CCccCCcccCcchhhhhcccccc-cCCCcccccccccc
Confidence            3467789999999998854  22345678999999999985 4443 345567788888877751 111    1235566


Q ss_pred             cEEEEcCC
Q 036097          258 HSITVVSP  265 (481)
Q Consensus       258 ~~L~l~~~  265 (481)
                      +.|+++++
T Consensus        90 ~~L~L~~N   97 (162)
T d1a9na_          90 TELILTNN   97 (162)
T ss_dssp             CEEECCSC
T ss_pred             ccceeccc
Confidence            66666555

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.29  E-value=3.7e-07  Score=85.81  Aligned_cols=91  Identities=10%  Similarity=0.124  Sum_probs=46.1

Q ss_pred             cCCcccCCCCccEEEEcCeeccCC----CCCCCcCCCcceEEEecceecC------h---HHHHHHhcCCCccceeEeee
Q 036097          155 LPQMVVCSETVNVLDLFGCILLEF----PGRNSVKLPSLRKLRLAQVRAS------D---QVIENLVAGCPLIEDLIFEF  221 (481)
Q Consensus       155 l~~~~~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~L~~~~~~------~---~~l~~l~~~~p~Le~L~l~~  221 (481)
                      +...+....+|+.|+|++|.+.+.    ........++|+.+++.++...      .   ..+...+..|++|++|++++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~  102 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  102 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence            333444567777777777765321    0012334567777777655321      1   12333455677777777776


Q ss_pred             ecC----cceE--eecCCCCCcEEEEccCC
Q 036097          222 CEG----LKSI--KLFGRSKLRDIKIKGGR  245 (481)
Q Consensus       222 ~~~----~~~l--~i~~~~~L~~L~l~~~~  245 (481)
                      |..    +..+  .+..+++|++|++++|.
T Consensus       103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1         103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             CCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             cccccccccchhhhhcccccchheeccccc
Confidence            631    1111  11223566666665553

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=4.7e-07  Score=80.37  Aligned_cols=83  Identities=13%  Similarity=0.151  Sum_probs=59.9

Q ss_pred             CCeeEEEEEEeecCCcccccCCcc-cCCCCccEEEEcCeeccCC-CCCCCcCCCcceEEEecce-ecChHHHHHHhcCCC
Q 036097          136 STVKELELHTILRGDRLYHLPQMV-VCSETVNVLDLFGCILLEF-PGRNSVKLPSLRKLRLAQV-RASDQVIENLVAGCP  212 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~L~~~-~~~~~~l~~l~~~~p  212 (481)
                      +++++|+++.+    ....+|... .++++|++|++++|.+... +......++.++++.+..+ .+.. .....+..++
T Consensus        29 ~~l~~L~Ls~n----~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~-~~~~~~~~l~  103 (242)
T d1xwdc1          29 RNAIELRFVLT----KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLP  103 (242)
T ss_dssp             SCCSEEEEESC----CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCE-ECTTSEECCT
T ss_pred             CCCCEEECcCC----cCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccc-cccccccccc
Confidence            58999999876    345677654 5699999999999987553 3334567899999987654 3322 1223367899


Q ss_pred             ccceeEeeeec
Q 036097          213 LIEDLIFEFCE  223 (481)
Q Consensus       213 ~Le~L~l~~~~  223 (481)
                      +|++|.+.++.
T Consensus       104 ~L~~l~l~~~~  114 (242)
T d1xwdc1         104 NLQYLLISNTG  114 (242)
T ss_dssp             TCCEEEEESCC
T ss_pred             cccccccchhh
Confidence            99999999874

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.27  E-value=8.3e-09  Score=89.18  Aligned_cols=79  Identities=15%  Similarity=0.179  Sum_probs=49.9

Q ss_pred             eeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh-HHHHHHhcCCCccce
Q 036097          138 VKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD-QVIENLVAGCPLIED  216 (481)
Q Consensus       138 l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~Le~  216 (481)
                      ++.+++...  ......++..+..+++|++|+|++|.+.+++  ....+++|++|+|++|.+.+ ..+   ...++.|++
T Consensus        25 ~~~~~l~~~--~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~~~---~~~~~~L~~   97 (198)
T d1m9la_          25 AEKVELHGM--IPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENL---DAVADTLEE   97 (198)
T ss_dssp             CSCEECCBC--CTTCCCCHHHHHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSCSSH---HHHHHHCCE
T ss_pred             cceeeeecc--cCchhhhhhHHhcccccceeECcccCCCCcc--cccCCccccChhhccccccccccc---ccccccccc
Confidence            444544443  2334455556667788888888888876653  35567888888888887754 222   223456777


Q ss_pred             eEeeeec
Q 036097          217 LIFEFCE  223 (481)
Q Consensus       217 L~l~~~~  223 (481)
                      |++++|.
T Consensus        98 L~l~~N~  104 (198)
T d1m9la_          98 LWISYNQ  104 (198)
T ss_dssp             EECSEEE
T ss_pred             ccccccc
Confidence            7777763

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.23  E-value=1.9e-07  Score=73.67  Aligned_cols=60  Identities=22%  Similarity=0.222  Sum_probs=34.7

Q ss_pred             ccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeee
Q 036097          159 VVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFC  222 (481)
Q Consensus       159 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~  222 (481)
                      +..+++|++|++++|.+..+|+ ....+++|++|++++|.+.+  +.. +..+|+|++|++++|
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~--l~~-~~~l~~L~~L~l~~N   75 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALEN--VDG-VANLPRLQELLLCNN   75 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSS
T ss_pred             cccCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccc--cCc-cccccccCeEECCCC
Confidence            4556666666666666655542 34456666666666666543  111 445666666666655

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.98  E-value=1.5e-06  Score=68.31  Aligned_cols=82  Identities=24%  Similarity=0.300  Sum_probs=67.1

Q ss_pred             hCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh-HHHHHHhcCCCc
Q 036097          135 ESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD-QVIENLVAGCPL  213 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~  213 (481)
                      ..++++|+++.+    ....+|..+..+++|+.|++++|.+..++  ....+++|++|+++++.+.+ ..+. .+..+|+
T Consensus        19 l~~L~~L~ls~N----~l~~lp~~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~-~l~~~~~   91 (124)
T d1dcea3          19 LLLVTHLDLSHN----RLRALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQ-PLVSCPR   91 (124)
T ss_dssp             GTTCCEEECCSS----CCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTG-GGGGCTT
T ss_pred             CCCCCEEECCCC----ccCcchhhhhhhhcccccccccccccccC--ccccccccCeEECCCCccCCCCCch-hhcCCCC
Confidence            368999999876    44578888888999999999999997764  46789999999999998865 3332 3678999


Q ss_pred             cceeEeeeec
Q 036097          214 IEDLIFEFCE  223 (481)
Q Consensus       214 Le~L~l~~~~  223 (481)
                      |++|+++++.
T Consensus        92 L~~L~l~~N~  101 (124)
T d1dcea3          92 LVLLNLQGNS  101 (124)
T ss_dssp             CCEEECTTSG
T ss_pred             CCEEECCCCc
Confidence            9999999874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.93  E-value=2.2e-06  Score=73.12  Aligned_cols=91  Identities=21%  Similarity=0.227  Sum_probs=60.4

Q ss_pred             cccccCCcccCCCCccEEEEcCeeccC-CCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeecCcceE-
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCILLE-FPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCEGLKSI-  228 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~~~~~l-  228 (481)
                      ....+|..+.  +++++|+|++|.+.. .+......+++|+.|+|+++.+..- ....+...+.|++|++++|. +..+ 
T Consensus        19 ~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N~-l~~l~   94 (192)
T d1w8aa_          19 GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK-IKEIS   94 (192)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC-CCEEC
T ss_pred             CcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeecccc-ccccC
Confidence            4456676553  678999999998864 3334456788999999988876531 12235678888889888874 3333 


Q ss_pred             --eecCCCCCcEEEEccCC
Q 036097          229 --KLFGRSKLRDIKIKGGR  245 (481)
Q Consensus       229 --~i~~~~~L~~L~l~~~~  245 (481)
                        .+.++++|+.|+++++.
T Consensus        95 ~~~F~~l~~L~~L~L~~N~  113 (192)
T d1w8aa_          95 NKMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             SSSSTTCTTCCEEECCSSC
T ss_pred             HHHHhCCCcccccccCCcc
Confidence              23445667777776664

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.88  E-value=2.9e-06  Score=72.33  Aligned_cols=105  Identities=10%  Similarity=0.064  Sum_probs=74.2

Q ss_pred             CCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccc
Q 036097          136 STVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIE  215 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le  215 (481)
                      .++++|+|+.+  ......-+..+..+++|+.|+|+++.+...+......+++|++|+|++|++.. .....+.+.++|+
T Consensus        29 ~~l~~L~Ls~N--~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~-l~~~~F~~l~~L~  105 (192)
T d1w8aa_          29 LHTTELLLNDN--ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLK  105 (192)
T ss_dssp             TTCSEEECCSC--CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCE-ECSSSSTTCTTCC
T ss_pred             CCCCEEEeCCC--CCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccc-cCHHHHhCCCccc
Confidence            57899998886  22222223344568999999999999988777677789999999999998754 1122367899999


Q ss_pred             eeEeeeecCcceEe---ecCCCCCcEEEEccC
Q 036097          216 DLIFEFCEGLKSIK---LFGRSKLRDIKIKGG  244 (481)
Q Consensus       216 ~L~l~~~~~~~~l~---i~~~~~L~~L~l~~~  244 (481)
                      +|+|+++. ++.+.   +..+++|+.|+++++
T Consensus       106 ~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_         106 TLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             EEECCSSC-CCEECTTSSTTCTTCCEEECTTC
T ss_pred             ccccCCcc-ccccCHHHhcCCccccccccccc
Confidence            99999885 44432   233455666655544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.42  E-value=1.5e-05  Score=68.00  Aligned_cols=102  Identities=17%  Similarity=0.196  Sum_probs=73.1

Q ss_pred             HhCCeeEEEEEEeecCCcccccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCc
Q 036097          134 IESTVKELELHTILRGDRLYHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPL  213 (481)
Q Consensus       134 ~~~~l~~L~L~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~  213 (481)
                      ...++++|+|+.+    ....++ .+..+++|++|+|++|.+..++. ....+++|+.|++++|.+++  +.. +..+++
T Consensus        46 ~L~~L~~L~Ls~n----~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l~~N~i~~--l~~-~~~l~~  116 (198)
T d1m9la_          46 TLKACKHLALSTN----NIEKIS-SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIAS--LSG-IEKLVN  116 (198)
T ss_dssp             HTTTCCEEECSEE----EESCCC-CHHHHTTCCEEECCEEEECSCSS-HHHHHHHCCEEECSEEECCC--HHH-HHHHHH
T ss_pred             cccccceeECccc----CCCCcc-cccCCccccChhhcccccccccc-cccccccccccccccccccc--ccc-cccccc
Confidence            3479999999887    334554 46678999999999999876642 22345789999999999865  222 456889


Q ss_pred             cceeEeeeec--CcceE-eecCCCCCcEEEEccC
Q 036097          214 IEDLIFEFCE--GLKSI-KLFGRSKLRDIKIKGG  244 (481)
Q Consensus       214 Le~L~l~~~~--~~~~l-~i~~~~~L~~L~l~~~  244 (481)
                      |++|++++|.  .+..+ .+.++++|+.|+++++
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             ccccccccchhccccccccccCCCccceeecCCC
Confidence            9999999884  22222 2455677777777665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=0.00017  Score=58.61  Aligned_cols=72  Identities=15%  Similarity=0.080  Sum_probs=50.1

Q ss_pred             cccccCCcccCCCCccEEEEcCee-ccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCccceeEeeeec
Q 036097          151 RLYHLPQMVVCSETVNVLDLFGCI-LLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLIEDLIFEFCE  223 (481)
Q Consensus       151 ~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~Le~L~l~~~~  223 (481)
                      .....|..+...++|++|++.++. +..++.....++++|+.|+|+++++..-. ...+...++|++|+|++|.
T Consensus        19 ~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          19 GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             CCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSC
T ss_pred             CCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc-cccccccccccceeccCCC
Confidence            445566667777888888887654 65565555667888888888888775411 1235677888888888774

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00025  Score=57.54  Aligned_cols=83  Identities=16%  Similarity=0.068  Sum_probs=58.8

Q ss_pred             CCeeEEEEEEeecCCcccccCCc-ccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecChHHHHHHhcCCCcc
Q 036097          136 STVKELELHTILRGDRLYHLPQM-VVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASDQVIENLVAGCPLI  214 (481)
Q Consensus       136 ~~l~~L~L~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L  214 (481)
                      .++++|++...   .....++.. +..+++|+.|+|++|.+..+++.....+++|++|+|++|++..- ...++ ....|
T Consensus        31 ~~l~~L~l~~n---~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l-~~~~~-~~~~l  105 (156)
T d2ifga3          31 ENLTELYIENQ---QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTV-QGLSL  105 (156)
T ss_dssp             SCCSEEECCSC---SSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTT-CSCCC
T ss_pred             cccCeeecCCC---ccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCccc-Chhhh-ccccc
Confidence            57888887643   123455543 45689999999999999887766677899999999999987531 01112 23468


Q ss_pred             ceeEeeeec
Q 036097          215 EDLIFEFCE  223 (481)
Q Consensus       215 e~L~l~~~~  223 (481)
                      ++|+++++.
T Consensus       106 ~~L~L~~Np  114 (156)
T d2ifga3         106 QELVLSGNP  114 (156)
T ss_dssp             CEEECCSSC
T ss_pred             cccccCCCc
Confidence            888888764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.00033  Score=57.25  Aligned_cols=59  Identities=17%  Similarity=0.168  Sum_probs=27.6

Q ss_pred             CCCccEEEEcCeeccCCCCC--CCcCCCcceEEEecceecCh-HHHHHHhcCCCccceeEeeee
Q 036097          162 SETVNVLDLFGCILLEFPGR--NSVKLPSLRKLRLAQVRASD-QVIENLVAGCPLIEDLIFEFC  222 (481)
Q Consensus       162 ~~~L~~L~L~~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~Le~L~l~~~  222 (481)
                      +++|++|+|++|.+.++.+.  ....+++|+.|+|++|.+.+ ..+.. + ..+.|++|+++++
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-l-~~~~L~~L~L~~N  125 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-I-KGLKLEELWLDGN  125 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-H-TTCCCSSCCCTTS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-h-hccccceeecCCC
Confidence            45555555555555443211  12235555555555555544 22221 2 2334555555554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.51  E-value=0.0032  Score=51.27  Aligned_cols=37  Identities=16%  Similarity=0.254  Sum_probs=20.9

Q ss_pred             CCcceEEEecce-ecChHHHHH---HhcCCCccceeEeeee
Q 036097          186 LPSLRKLRLAQV-RASDQVIEN---LVAGCPLIEDLIFEFC  222 (481)
Q Consensus       186 ~~~L~~L~L~~~-~~~~~~l~~---l~~~~p~Le~L~l~~~  222 (481)
                      .+.|++|+|+++ .++++.+..   .+..++.|++|++++|
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n   54 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT   54 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc
Confidence            466777777654 355533322   3445566666666655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.00075  Score=54.99  Aligned_cols=82  Identities=20%  Similarity=0.129  Sum_probs=54.0

Q ss_pred             hCCeeEEEEEEeecCCcc-cccCCcccCCCCccEEEEcCeeccCCCCCCCcCCCcceEEEecceecCh------HHHHHH
Q 036097          135 ESTVKELELHTILRGDRL-YHLPQMVVCSETVNVLDLFGCILLEFPGRNSVKLPSLRKLRLAQVRASD------QVIENL  207 (481)
Q Consensus       135 ~~~l~~L~L~~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~------~~l~~l  207 (481)
                      .+++++|+|+.+  .... ..++..+..+++|+.|+|++|.+.+.++.......+|+.|++.+|.+..      .....+
T Consensus        64 ~~~L~~L~Ls~N--~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          64 IPELLSLNLSNN--RLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             CTTCCCCCCCSS--CCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             CCCCCEeeCCCc--cccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            468888888876  2221 2334445568888888888888866554333455678888888886642      234455


Q ss_pred             hcCCCccceeE
Q 036097          208 VAGCPLIEDLI  218 (481)
Q Consensus       208 ~~~~p~Le~L~  218 (481)
                      +..+|+|+.|+
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            67788888775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.22  E-value=0.0067  Score=49.27  Aligned_cols=19  Identities=16%  Similarity=-0.064  Sum_probs=12.4

Q ss_pred             hhHHhhhcCCcccEEEecc
Q 036097          290 VDETLSYHITRLVVLECLG  308 (481)
Q Consensus       290 ~~~~~~~~~~~L~~L~L~~  308 (481)
                      .+..+..+.|+|++|+|++
T Consensus         6 ~l~~l~~n~~~L~~L~L~~   24 (167)
T d1pgva_           6 CINRLREDDTDLKEVNINN   24 (167)
T ss_dssp             HHHHHHTTCSSCCEEECTT
T ss_pred             HHHHHHhCCCCCcEEEeCC
Confidence            3455556667777777766

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.06  E-value=0.0064  Score=49.30  Aligned_cols=38  Identities=8%  Similarity=0.072  Sum_probs=19.8

Q ss_pred             CCCCceEEEEecc-cchhhhHHHHHhhhhhcCcccceEEE
Q 036097          424 LSGVKHLNFSISI-PFKKFAIAQVVDGLLWMSPHVDTVTI  462 (481)
Q Consensus       424 l~~L~~L~l~~~~-~~~~~~~~~~l~~ll~~~p~L~~L~l  462 (481)
                      .++|+.++|+.+. ..++. ....+...+..+++|++|.+
T Consensus       101 ~~~L~~l~L~l~~n~i~~~-~~~~La~~L~~n~~L~~L~l  139 (166)
T d1io0a_         101 NTSLIELRIDNQSQPLGNN-VEMEIANMLEKNTTLLKFGY  139 (166)
T ss_dssp             CSSCCEEECCCCSSCCCHH-HHHHHHHHHHHCSSCCEEEC
T ss_pred             CccccEEeeccCCCcCcHH-HHHHHHHHHHhCCCcCEEeC
Confidence            3556666554332 12211 13344455666777777776

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.42  E-value=0.0076  Score=48.82  Aligned_cols=39  Identities=8%  Similarity=0.143  Sum_probs=25.9

Q ss_pred             CCCcceEEEecce-ecChHHHHHH---hcCCCccceeEeeeec
Q 036097          185 KLPSLRKLRLAQV-RASDQVIENL---VAGCPLIEDLIFEFCE  223 (481)
Q Consensus       185 ~~~~L~~L~L~~~-~~~~~~l~~l---~~~~p~Le~L~l~~~~  223 (481)
                      ..|.|++|+|.++ .++++.+..+   +..+++|++|++++|.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~   57 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR   57 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc
Confidence            4577888888874 4666554333   4467778888887773