Citrus Sinensis ID: 036099

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------28
Protein Sequence
MEQISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRISNLSGFLFHSTEDCMNYFSYSDNNEGCGNDGEGFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNESKLLIWLFDDRHHNNSHSGSKAAG
Secondary Structure (PSIPRED)
cccccccHHHHHHHHccccHHHHHHHHHHcHHHHHHHccccccccccccccEEEccccccEEEEcccccccccccccccccccccccccccccEEEEEEEccEEEEcccccccEEEEEccccccEEEcccccccccccEEEEEEcccccccEEEEEEEEcccccEEEEEEcccccEEEccccccccccEEEEcccEEEEEccEEEEEEcccEEEEEEccccEEEEEEccccccccccccEEEEEccEEEEEEccccEEEEEEEEEccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccEEEccccEEEEEEcccccccEEEEcccccEEEEcccccccccccEEEEEEcccccccEEEEEEEcccccEEEEEEEcccccEEEEEEcccccccEEEcccccEEEEEEEEEEEEcccEEEEEEccccEEEEEEcccccccccccEEEEEcccEEEEEEccccEEEEEEEEcccccccccEEcccc
Coil and Loop (DISEMBL)
MEQISLSEDLITEILcrlpvksvtRFKIVSKAWNNLISNvciprisnlsgflfhstedcmnyfsysdnnegcgndgeGFVESLTsllpseyfpyklfdscngLILLGsslrehryyvcnpltkqcvaIPKARERVLesapalafdprdsshyKIIRFVRARMVSEAEIFSSETKTWIncklnlkppghILFFVMRSVysrggilysitdqgtivcynieapteveivevpdenypygrGVIELCKGVLNYANRNESKLLIWLFddrhhnnshsgskaag
Flexible Loop (DISEMBL)
meqislseDLITeilcrlpvksvTRFKIVSKAWNNLISNVCIPRISNLSGFLFHSTEDCMNYFSYSDNNEGCGNDGEGFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESapalafdprdsshyKIIRFVRARMVSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEVEivevpdenypyGRGVIELCKGVLNYANRNESKLLIWLFDDrhhnnshsgskaag
Low Complexity Region (SEG)
MEQISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRISNLSGFLFHSTEDCMNYFSYSdnnegcgndgegFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNESKLLIWLFDDRHHNNSHSGSKAAG
Disordered region (IsUnstruct)
********DLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRISNLSGFLFHSTEDCMNYFSYSDNNEGCGNDGEGFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNESKLLIWLFDD**************
Disordered Region (DISOPRED)
*EQISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRISNLSGFLFHSTEDCMNYFSYSDNNEGCGNDGEGFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNESKLLIWLFDDRHHNNSHSGS*A**
Disordered Region (DISEMBL)
MEQISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRISNLSGFLFHSTEDCMNYFSYSDNNEGCGNDGEGFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNESKLLIWLFDDRHHN**********
Disordered Region (DISPRO)
****SLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRISNLSGFLFHSTEDCMNYFSYSDNNEGCGNDGEGFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNESKLLIWLFDDRHHNN*********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRISNLSGFLFHSTEDCMNYFSYSDNNEGCGNDGEGFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNESKLLIWLFDDRHHNNSHSGSKAAG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	279	2.2.26 [Sep-21-2011]
Q9FZF8	389	Putative F-box protein At	yes	no	0.620	0.444	0.287	8e-11
Q9FLS0	420	F-box protein At5g07610 O	no	no	0.756	0.502	0.273	2e-10
Q1PE57	413	Putative F-box/kelch-repe	no	no	0.569	0.384	0.296	4e-10
Q9LMR4	410	Putative F-box/kelch-repe	no	no	0.813	0.553	0.250	8e-08
Q9C6J3	396	Putative F-box protein At	no	no	0.602	0.424	0.285	2e-07
Q9LHD8	311	Putative F-box protein At	no	no	0.870	0.781	0.251	2e-07
Q9LU90	414	F-box protein At3g26010 O	no	no	0.845	0.570	0.249	5e-07
Q94A64	418	F-box protein At5g03970 O	no	no	0.856	0.571	0.255	8e-07
Q9LMB0	350	Putative F-box protein At	no	no	0.756	0.602	0.25	1e-06
Q8S8C7	407	Putative F-box protein At	no	no	0.695	0.476	0.272	2e-06

>sp|Q9FZF8|FB44_ARATH Putative F-box protein At1g47790 OS=Arabidopsis thaliana GN=At1g47790 PE=4 SV=1

 Score = 67.8 bits (164), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 18/191 (9%)

Query: 5   SLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRI-----SNLSGFLF-HSTED 58
           S   DL +EIL RLPVKSV RF+ VSK W+++I++    +      S     LF     D
Sbjct: 24  SFPLDLASEILLRLPVKSVVRFRCVSKLWSSIITDPYFIKTYETQSSTRQSLLFCFKQSD 83

Query: 59  CMNYFSYSDNNEGCGNDGEGFVESLTSLLPSEYFPYKLFDSCNGLI---LLGSSLREHRY 115
            +  FS   ++    +  +  ++     LP E+      +S +GLI   +L + +     
Sbjct: 84  KLFVFSIPKHHYDSNSSSQAAIDRFQVKLPQEFSYPSPTESVHGLICFHVLATVI----- 138

Query: 116 YVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFS--SET 173
            V NP  +Q + +PK R+   E    L +DP +  H K++   R R   E ++ +  S  
Sbjct: 139 -VWNPSMRQFLTLPKPRKSWKELTVFLGYDPIEGKH-KVVCLPRNRTCDECQVLTLGSAQ 196

Query: 174 KTWINCKLNLK 184
           K+W   K   K
Sbjct: 197 KSWRTVKTKHK 207

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLS0|FB253_ARATH F-box protein At5g07610 OS=Arabidopsis thaliana GN=At5g07610 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 111/256 (43%), Gaps = 45/256 (17%)

Query: 8   EDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRISN----------LSGFLFHSTE 57
           +D++ +IL  LP+K++ RFK VSK W +LI+N   P  SN          +SGF  HS  
Sbjct: 35  DDVLIQILSFLPIKTLLRFKRVSKRWLSLITN---PVFSNRVIKSNHPLPISGFFLHSPR 91

Query: 58  DCMNYFSYSDNNEGCGNDGEGFVESLTSLLPSEYFPYK----LFDSCNGLIL-----LGS 108
           +    F           D +   + ++S LP  +  ++    +  S NGL+L       S
Sbjct: 92  EIKYSF--------VSLDDDATNQRISSSLPLWFTDHQTDMIIMQSTNGLLLCKCSCASS 143

Query: 109 SLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKI--IRFVRARMVSEA 166
           +     YYV NP TKQ   + +    +   A +LAFDP  S HYK+  +R       S A
Sbjct: 144 NHFNTNYYVYNPTTKQYTLLHQIAGHI---ALSLAFDPSRSPHYKVFCLRGRSNNSFSSA 200

Query: 167 --------EIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNI 218
                   E++SS    W         P   + F   SV+  G + +        + ++I
Sbjct: 201 SDSELYHIEVYSSNEGLWRRVVPVPTSPSTFIEFSY-SVFWNGAVNWYGFSSRDCLSFDI 259

Query: 219 EAPTEVEIVEVPDENY 234
               E++I+ +PD  +
Sbjct: 260 NT-QEIKILPLPDHEH 274

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PE57|FBK87_ARATH Putative F-box/kelch-repeat protein At4g22430 OS=Arabidopsis thaliana GN=At4g22430 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 86/192 (44%), Gaps = 33/192 (17%)

Query: 8   EDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRI-------SNLSGFLFHSTEDCM 60
           E ++TEIL RLP++S++RFK VS+ W + I +V   R+       ++ S  L    E+ +
Sbjct: 13  EGIVTEILVRLPLRSISRFKSVSQTWKSAIESVYFRRLFVSLHQNTSSSWSLLLRKEEFI 72

Query: 61  NYFSYSDNNEGCGNDGEGFVESLTSLLP----SEYFPYKLFDSCNGLILLGSSLREHRYY 116
           ++        GCG    G  +SL S +        F Y  F   NGLIL+   L   + Y
Sbjct: 73  DF-------HGCGT--WGLPKSLGSYIQCMELDGKFEYMWFSGSNGLILMHRKLGTWKNY 123

Query: 117 VCNPLTKQCVAIPK----------ARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEA 166
           V NP+ +Q V IP               V E    L+F    S +   +   +  M    
Sbjct: 124 VGNPVLQQWVEIPACPGSYTFFCGVVTGVDEVGVVLSFKVVKSGN---MFLNKGEMYMPL 180

Query: 167 EIFSSETKTWIN 178
            ++SSET  WI+
Sbjct: 181 YVYSSETGFWIH 192

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LMR4|FBK4_ARATH Putative F-box/kelch-repeat protein At1g15680 OS=Arabidopsis thaliana GN=At1g15680 PE=4 SV=1

 Score = 58.2 bits (139), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 112/271 (41%), Gaps = 44/271 (16%)

Query: 2   EQISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRI------------SNLS 49
            +I L E+L+ EI+ RLP  S+TRFK V K W +LI +     +            S + 
Sbjct: 15  RRIELPEELLAEIVARLPFISITRFKSVCKGWRSLIESTYFRHLFVFAHRNSSSSWSLVC 74

Query: 50  GFLFHSTEDCMNYFSYSDNNEGCGNDGEGFVESLTSLLPSEYF--PYKLFDSCNGLILLG 107
           G    S E+   ++       GC     G    L S +P       +K+    +GL+LL 
Sbjct: 75  GTFGWSVEEMAGFY-------GCKR--YGLPRRLGSYIPPHGLVDKHKIVACTDGLVLLQ 125

Query: 108 SSLREHRYYVCNPLTKQCVAIPKARERVLES---APALAFDPRDS--SHYKIIRF-VRAR 161
           +  +   + V +P+ +Q V +P    + + S   A  L     D     YK++   +  R
Sbjct: 126 TVTKRETFSVGSPVLRQWVQLPPHPWKGISSSVLAIGLVTRVEDGVVMEYKVVCMDIDYR 185

Query: 162 MVSEA---EIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQ-------G 211
              E+   EI+SS T TW   K  ++ P  I+    +   S   +L+ +          G
Sbjct: 186 WEVESLILEIYSSLTGTWTRKK--VRCPSLIVSLSYKRCLSLKKMLHWLDTHYRCRSSVG 243

Query: 212 TIVCYNIEA---PTEVEIVEVPDENYPYGRG 239
            IV Y++ A     +  I+  PD+   + R 
Sbjct: 244 AIVAYDVYADDDEQQFRIIPFPDQKACFRRA 274

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6J3|FB52_ARATH Putative F-box protein At1g50870 OS=Arabidopsis thaliana GN=At1g50870 PE=4 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 21/189 (11%)

Query: 9   DLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRISNL---------SGFLFHSTEDC 59
           DLI EIL RLPVKSV RF+ VSK W   +S    P  +N          S  +F   +D 
Sbjct: 34  DLILEILLRLPVKSVLRFRCVSKLW---LSTTTDPYFTNSYEARSSTRPSLLMFFKNKDK 90

Query: 60  MNYFSYSDNNEGCG--NDGEGFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLREHRYYV 117
           +  F++  +N+     +     V+S     P +Y  +   +S +GLI    S +     +
Sbjct: 91  LFVFTFPHHNQNSKETHSYSQHVDSYHIKYP-KYCCFPFTESVHGLISFRISTKP---II 146

Query: 118 CNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFS--SETKT 175
            NP  +Q + +PK  +     +  L +DP +  H K++   R     E  + +  S  + 
Sbjct: 147 WNPTMRQFLILPKPEKSWKGLSVFLGYDPVEGKH-KLMCMNRDNTSDECRVLTLGSAQEK 205

Query: 176 WINCKLNLK 184
           W   K NLK
Sbjct: 206 WRRIKSNLK 214

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHD8|FB189_ARATH Putative F-box protein At3g28280 OS=Arabidopsis thaliana GN=At3g28280 PE=2 SV=2

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 114/274 (41%), Gaps = 31/274 (11%)

Query: 5   SLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISN-------VCIPRISNLSGFLFHSTE 57
           SL EDL+  IL +LP+K  T FKIV   W +++ +       + I + S+ S +   S  
Sbjct: 3   SLPEDLLAMILVKLPIKIFTTFKIVCTQWESMVDSPYFRDLFLSIHQNSHYSSWSILSRC 62

Query: 58  DCMNYFSYSDNNEGCGNDGEGFVES-LTSLLPSEYFPYKLFDSCN--GLILLGSS---LR 111
           D      Y  N  G       ++ S LT    ++   YK++      G+IL+  +   ++
Sbjct: 63  DEEVIAHYGCNTWGLQRSLHFYISSFLTKKFETQRNNYKVWSYSTDVGMILISENCICVK 122

Query: 112 EHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSS----HYKIIRFVRARMVSEAE 167
               YV NP++++CV IP        S P L    R  +     YK++ F  +       
Sbjct: 123 NRSLYVANPVSQECVEIPSHGYLKKVSCP-LGIATRTENGVLLDYKVVLFNGSDTFRRLL 181

Query: 168 IFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSIT----DQGTIVCYNIEAP-- 221
           I+SS+T  W    ++L   G    F  +S  S  G ++ I      +   V +++ A   
Sbjct: 182 IYSSQTGMWSINTVDLTVSG----FHNQSPISLHGSIHWIASTSHSEDVAVSFDLYATGT 237

Query: 222 --TEVEIVEVPD-ENYPYGRGVIELCKGVLNYAN 252
              +  +   PD   +P        C+G L Y N
Sbjct: 238 SSVQCRVTTFPDFGKHPKFTRSFSTCQGSLMYMN 271

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU90|FB188_ARATH F-box protein At3g26010 OS=Arabidopsis thaliana GN=At3g26010 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/265 (24%), Positives = 120/265 (45%), Gaps = 29/265 (10%)

Query: 4   ISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRISNLSGFLFHSTEDCMNYF 63
           I L++ + TEIL RLP++ + RFK VSK W + I +V   R+  +S     ST   + ++
Sbjct: 8   IHLTDAIWTEILARLPLRIIARFKSVSKTWKSTIESVYFRRLF-VSVHRKSSTSWSLMWY 66

Query: 64  SYSDNNEGCGNDGEGFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLREHRYYVCNPLTK 123
              D     G +  G  +SL+  +PS     +   S +GL+L+  +  +   +V NP+ +
Sbjct: 67  GQKDLVGFHGCETWGLPKSLSFYIPSSLCIIE--GSSHGLVLISEN-DDDCCFVGNPVLQ 123

Query: 124 QCVAIPKARERVLESAPALAFDPRDSSH---YKIIRFVRARMVS-------EAEIFSSET 173
           Q + IP     V  S   L     D      +K+++     + +          ++SSET
Sbjct: 124 QWIKIPPP--PVHSSVFGLVSRVDDDGFVLGFKVVKLAEVIVTNNYVSCSLSVFVYSSET 181

Query: 174 KTWINCKLNLKPPGHILFFVMRSVYSRGGILY--SITDQGTIVCYNI--EAPTEVEIVEV 229
             W  CK  +  P  I  F     ++  G +Y   +++ G +V Y+   E   +  ++ +
Sbjct: 182 GIW-TCK-TIHCPYQITNF---GSFTLDGTIYFDHLSEPGVLVAYDFYSEISDQFWVIPL 236

Query: 230 PDE-NYPYG---RGVIELCKGVLNY 250
           PD  N+ +    +G +   +G + Y
Sbjct: 237 PDHPNHGFNSDFKGALTTSQGFVMY 261

Arabidopsis thaliana (taxid: 3702)

>sp|Q94A64|FB251_ARATH F-box protein At5g03970 OS=Arabidopsis thaliana GN=At5g03970 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 125/286 (43%), Gaps = 47/286 (16%)

Query: 7   SEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRISNLSGFLFHSTEDCMNYFSYS 66
           S D + EIL  LP +++ +  +VSK W  +I++ C  R + L+ +      + + +F  S
Sbjct: 25  SNDTMCEILILLPPETIYKLILVSKRWLEIIASPCF-RHTYLAKW--KPNFELIGFFVCS 81

Query: 67  DNNEGCGNDGEGFVESLTSL-----------LPSEYFPYKL---FDSCNGLILLGSSLRE 112
               G   DG     +  SL           + S     KL    DS +GL+L G   + 
Sbjct: 82  SMYLGRRIDGTRRPRAEPSLPLLSTSSIGDEIESSGILKKLGYYIDSADGLLLCGRHPKA 141

Query: 113 HRYYVCNPLTKQCVAIPKARERVLESAPALAFD--PRDSSHYKIIR-----FVRARMVSE 165
             YY+ +P T++   +P+ R    E   +L  +  P     YK++R     F       +
Sbjct: 142 --YYLWDPSTQKQQQLPRPRVHFEELCMSLISEDSPDQGFSYKVVRAECVAFPVNSTKVK 199

Query: 166 AEIFSSETKTW----INC--KLNLKP--PGHILFFVMRSVYSRGGILYSITDQGTIVCYN 217
            E FSS+T TW    + C   L+L P  PG ++           G++Y     G I  Y+
Sbjct: 200 VETFSSKTSTWSYSELICLEPLSLSPWTPGRVI----------KGVVYWHARGGKIAIYD 249

Query: 218 IEAPTE-VEIVEVPDENYPYGRGVI-ELCKGVLNYANRNESKLLIW 261
             +  + ++++++P + Y Y   V+ E   G L Y   N+S + +W
Sbjct: 250 SNSEEKRIDVIKLP-KTYDYDEQVLGETDDGSLQYGWSNKSVMEVW 294

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LMB0|FB10_ARATH Putative F-box protein At1g19160 OS=Arabidopsis thaliana GN=At1g19160 PE=4 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 101/236 (42%), Gaps = 25/236 (10%)

Query: 6   LSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRISNLSGFLFHSTEDCMNYFSY 65
           + ED + EIL RLPVKS+ RF  VSK   ++I +     +         ST +    F++
Sbjct: 2   IPEDPLVEILLRLPVKSLARFLCVSKRCYSIIRSRHFINLYQSRA----STRESRVMFAF 57

Query: 66  SDNNEGCGNDGEGFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLREH--RYYVCNPLTK 123
            D N     +     +  +S+   +   Y +    NGLI +     EH  R ++CNP+TK
Sbjct: 58  RDTNTFFRWNFFSLSQPPSSVTNIDSTSYCMPVCVNGLICV-----EHMFRLWICNPVTK 112

Query: 124 QCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSE--AEIFS-SETKTW--IN 178
           +    P    R   +   + +DP +   YK++   R  +++    E+F+  +  +W  I 
Sbjct: 113 KITLFPDCGPRKQFTTWYMGYDPIN-YQYKVLYLSREHLIAPYIVEVFTFGDEGSWRMIE 171

Query: 179 CKLNLKPPGHILFFVMRSVYSRGGILYS--ITDQGTIVCYNIEAPTEVEIVEVPDE 232
              N   P        R V + G + Y     D   IV +++      + +E+P E
Sbjct: 172 ADENFHSPE------TRGVCTHGVLYYGAYTGDGAKIVRFDVRTEKFGKFIEMPAE 221

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8C7|FB105_ARATH Putative F-box protein At2g16220 OS=Arabidopsis thaliana GN=At2g16220 PE=4 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 93/220 (42%), Gaps = 26/220 (11%)

Query: 6   LSEDLITEILCRLPVKSVTRFKIVSKAWNNLISN-----VCIPRISNLSGFLFHSTEDCM 60
           L+ DLI E+L RLP+KSV RF  VSK W ++  +     + + R S     LF   ++ +
Sbjct: 6   LTNDLILEVLSRLPLKSVARFHCVSKRWASMFGSPYFKELFLTRSSAKPRLLFAIVQNGV 65

Query: 61  NYFSYSDNNEGCGNDGEGFVESLTSLLPSEYFPY-----KLFD--SCNGLILLGSSLREH 113
             F  S   E   +      E    L P+    Y     + F     +GLI L     E 
Sbjct: 66  WRFFSSPRLEKSSSTLVATAEFHMKLSPNNLRIYHDNTPRYFSIGYASGLIYLYGDRYEA 125

Query: 114 RYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSET 173
              +CNP T +   +PK      ++     FDP D   YK +  +       ++I     
Sbjct: 126 TPLICNPNTGRYTILPKCYT-YRKAFSFFGFDPID-KQYKALSMIYPSGPGHSKIL---- 179

Query: 174 KTWINCKLNLKPPGHILFFVMRSVYSRG----GILYSITD 209
            T+ +  +N K    I + V+  +YS+G    G+LY + D
Sbjct: 180 -TFGDGDMNWK---KIKYRVLHDIYSQGICINGVLYYLGD 215

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
224135955	391	predicted protein [Populus trichocarpa]	0.935	0.667	0.376	1e-39
224104663	391	predicted protein [Populus trichocarpa]	0.935	0.667	0.363	7e-37
224135959	334	predicted protein [Populus trichocarpa]	0.863	0.721	0.373	6e-35
224097562	396	predicted protein [Populus trichocarpa]	0.928	0.654	0.343	2e-28
224105803	280	predicted protein [Populus trichocarpa]	0.605	0.603	0.402	9e-24
224097558	531	predicted protein [Populus trichocarpa]	0.910	0.478	0.327	1e-23
255539837	323	conserved hypothetical protein [Ricinus	0.885	0.764	0.321	1e-22
357128384	366	PREDICTED: F-box protein At5g07610-like	0.896	0.683	0.298	1e-20
326525693	388	predicted protein [Hordeum vulgare subsp	0.896	0.644	0.327	3e-20
357126153	363	PREDICTED: F-box protein At2g40910-like	0.917	0.705	0.306	2e-19

>gi|224135955|ref|XP_002327345.1| predicted protein [Populus trichocarpa] gi|222835715|gb|EEE74150.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/292 (37%), Positives = 159/292 (54%), Gaps = 31/292 (10%)

Query: 4   ISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRIS-----NLSGFLFHSTED 58
           + L +D+I EILCRLPVK V R K+VSKAW+ LISNVC P  S     + SGFLF  +  
Sbjct: 3   VQLPDDMIVEILCRLPVKVVMRLKVVSKAWHRLISNVCAPLFSAAAAAHPSGFLFLCSFQ 62

Query: 59  CMN-------YFSYSDNNEGCGNDGEGFVESLTSLLPSEYFPYKLFDSCNGLIL-LGSSL 110
            +        Y SY D  + C    +GFV+S   +LP        FD CNGL+L +    
Sbjct: 63  IIGGLGYFAAYASYPDVRD-CVGQTDGFVDSYACMLPFMLSSDHYFDCCNGLLLFVRREQ 121

Query: 111 RE---HRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFV----RARMV 163
           RE   H Y+VCN  T+QCVAIP  R R    A A+A+DP  S HYK++RF+    +    
Sbjct: 122 REALPHYYFVCNTTTRQCVAIPNPRPRTAPFAAAIAYDPAKSPHYKVVRFIYLEEKTSCP 181

Query: 164 SEAEIFSSETKTWI------NCKLNLKPPGHILFFVMRSVYSRGGILYSIT-DQGTIVCY 216
            + +IFSS+T  W+      + +L L       +  +R      G++Y ++     ++ +
Sbjct: 182 VKLDIFSSDTGKWVRRGVMLSTELPLAAADADKYGCIRRSIYLDGMIYKLSFVVNYLIRF 241

Query: 217 NIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNESKLL--IWLFDDR 266
           ++ AP++V I E+P +N     G I + +G L Y+N +ES L+  IWL +DR
Sbjct: 242 DLNAPSDVAI-ELPHKNAAACHGFIGMSRGSLYYSNHDESGLMISIWLLEDR 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104663|ref|XP_002333910.1| predicted protein [Populus trichocarpa] gi|222838910|gb|EEE77261.1| predicted protein [Populus trichocarpa]

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 106/292 (36%), Positives = 158/292 (54%), Gaps = 31/292 (10%)

Query: 4   ISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRISNL-----SGFLFHSTED 58
           + L +++I EIL +LPVK V R K+VSK W+ LISNVC P  S       SGFLF  +  
Sbjct: 3   VQLPDNIIVEILYQLPVKVVMRLKVVSKTWHRLISNVCAPLFSAAAAAHPSGFLFLCSFQ 62

Query: 59  CMN-------YFSYSDNNEGCGNDGEGFVESLTSLLPSEYFPYKLFDSCNGLIL-LGSSL 110
            +        Y SY D ++ C    +GFV+S   +LP        FD CNGL+L +    
Sbjct: 63  IIGGLGYFAAYASYPDVHD-CVGQTDGFVDSYACMLPFMLSSDHYFDCCNGLLLFVRREQ 121

Query: 111 RE---HRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFV----RARMV 163
           RE   H Y+VCN  T+QCVAIP  R R    A A+A+DP  S HYK++RF+    +    
Sbjct: 122 REDLPHYYFVCNTTTRQCVAIPNPRPRTAPFAAAIAYDPAKSPHYKVVRFIYLEEKTSCP 181

Query: 164 SEAEIFSSETKTWI------NCKLNLKPPGHILFFVMRSVYSRGGILYSIT-DQGTIVCY 216
            + +IFSS+T  W+      + +L L       +  +R      G++Y ++     ++ +
Sbjct: 182 VKLDIFSSDTGKWVRRGVMLSTELPLAAADADKYGCIRRSIYLDGMIYKLSFVVNYLIRF 241

Query: 217 NIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNESKLL--IWLFDDR 266
           ++ AP++V I E+P +N     G I + +G L Y+N++ES L+  IWL +DR
Sbjct: 242 DLNAPSDVAI-ELPHKNAADRHGFIGMSRGSLYYSNQDESGLMISIWLLEDR 292

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135959|ref|XP_002327346.1| predicted protein [Populus trichocarpa] gi|222835716|gb|EEE74151.1| predicted protein [Populus trichocarpa]

 Score =  154 bits (388), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 105/281 (37%), Positives = 141/281 (50%), Gaps = 40/281 (14%)

Query: 4   ISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRISNL-----SGFLFHSTED 58
           + LS+D+I EILCRLPVK V R   VSKAW+ LISNVC P  S       SGFLF  +  
Sbjct: 3   VQLSDDMIIEILCRLPVKMVMRLNAVSKAWHRLISNVCAPLFSAAAAAHPSGFLFLCSFQ 62

Query: 59  CMN-------YFSYSDNNEGCGNDGEGFVESLTSLLPSEYFPYKLFDSCNGLIL-LGSSL 110
            +        Y SY D  + C    +GFV+S   +LP        FD CNGL+L +    
Sbjct: 63  IIGGLGYFAAYASYPDVRD-CVGQTDGFVDSYACMLPFMLSSDHYFDCCNGLLLFVRREQ 121

Query: 111 RE---HRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAE 167
           RE   H Y+VCN  T+QCVAIP  R R    A A+A+DP  S HYK++RF+      E  
Sbjct: 122 REALPHYYFVCNTTTRQCVAIPNPRPRTAPFAAAIAYDPAKSPHYKVVRFI---YFEEKN 178

Query: 168 IFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEVEIV 227
               E                    + RS+Y  G I         ++ +++ AP++V I 
Sbjct: 179 FLPDEYGC-----------------IRRSIYLDGMIYKLSFVVNYLIRFDLNAPSDVAI- 220

Query: 228 EVPDENYPYGRGVIELCKGVLNYANRNESKLL--IWLFDDR 266
           E+P +N     G I + +G L Y+  +ES L+  IWL +DR
Sbjct: 221 ELPHKNAADRHGFIGMSRGSLYYSYHDESGLMISIWLLEDR 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097562|ref|XP_002310987.1| predicted protein [Populus trichocarpa] gi|222850807|gb|EEE88354.1| predicted protein [Populus trichocarpa]

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/282 (34%), Positives = 143/282 (50%), Gaps = 23/282 (8%)

Query: 5   SLSEDLITEILCRLP-VKSVTRFKIVSKAWNNLISNVCIPRISN---LSGFLFHSTEDCM 60
           SL +D++ EILCR+   K + R K V K+WNNLI++ C+P+IS    L GF++ + +   
Sbjct: 24  SLPDDVLVEILCRVTDRKHLIRLKSVCKSWNNLITDACVPKISASSPLHGFIYLAKKIGF 83

Query: 61  N--YFSY--SDNNEGCGNDGEGFVESLTSLLPSEYFPYKLFDSCNGLILL--GSSLREHR 114
              Y  Y           +   FV+S +SLLP E       D CNGL+L   G +L   +
Sbjct: 84  GKPYIDYIPCAITPAVAPEPHEFVKSYSSLLPFEPARGDFLDCCNGLLLFVEGCTL---Q 140

Query: 115 YYVCNPLTKQCVAIPKARERVLESA--PALAFDPRDSSHYKIIRF--VRARMVSEAEIFS 170
           YYVCNP TK CVAIP  R+ +LE+    ALAFDP  S HY+++ F    +R     ++FS
Sbjct: 141 YYVCNPATKHCVAIP--RDFMLENIIFAALAFDPSTSPHYRVVCFDYSESRPPVRLQVFS 198

Query: 171 SETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEVEIVEVP 230
           SET  W   +            V   +Y  G  LY I+    I+C+++        +E+P
Sbjct: 199 SETGNWTGNETPFGYSNKKCKVVKHCIYLDGA-LYCISTSKHIICFDLNRGNS-RAIELP 256

Query: 231 DENY--PYGRGVIELCKGVLNYANRNESKLLIWLFDDRHHNN 270
           ++    P G G +   +G L Y +   +    WL +DR  N+
Sbjct: 257 EKERLDPNGSGCVGQWRGHLCYTDLVGTAFYFWLLEDRCKND 298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105803|ref|XP_002333768.1| predicted protein [Populus trichocarpa] gi|222838455|gb|EEE76820.1| predicted protein [Populus trichocarpa]

 Score =  116 bits (291), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/184 (40%), Positives = 104/184 (56%), Gaps = 15/184 (8%)

Query: 5   SLSEDLITEILCRLP-VKSVTRFKIVSKAWNNLISNVCIPRISN---LSGFLFHS--TED 58
           SL +D++ EILCR+   K + R K V K WNNLI++ C+P+IS    L GF++H+     
Sbjct: 24  SLPDDVLVEILCRVTDGKHLIRLKSVCKCWNNLITDACVPKISASSPLHGFIYHALRVSS 83

Query: 59  CMNYFSY--SDNNEGCGNDGEGFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLREHRYY 116
              Y  Y           +   FV+S +SLLP +       D CNGL+L        RYY
Sbjct: 84  RKTYIDYIPCAMTPAVAPEPHEFVKSYSSLLPFDLARGDFLDCCNGLLLFVEGPIP-RYY 142

Query: 117 VCNPLTKQCVAIPKARERVLES--APALAFDPRDSSHYKIIRFVRARM--VSEAEIFSSE 172
           VCNP+TKQCVAIP  R+  LE+    +LAFDP  S HY+++ F  +++    +  +FSSE
Sbjct: 143 VCNPVTKQCVAIP--RDFTLENICTASLAFDPFKSPHYRVVCFDYSKLKPPQKLRVFSSE 200

Query: 173 TKTW 176
           T +W
Sbjct: 201 TGSW 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097558|ref|XP_002310986.1| predicted protein [Populus trichocarpa] gi|222850806|gb|EEE88353.1| predicted protein [Populus trichocarpa]

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 142/290 (48%), Gaps = 36/290 (12%)

Query: 6   LSEDLITEILCRLP-VKSVTRFKIVSKAWNNLISNVCIPRISN---LSGFLFH-----ST 56
           L +D++ EILCR+   K + R K V K WNNLI     P+IS+   L GF++H     S 
Sbjct: 25  LPDDVLVEILCRVTDRKHLIRLKSVCKCWNNLI-----PKISDSSPLRGFIYHALRVSSR 79

Query: 57  EDCMNYFSYSDNNEGCGNDGEGFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLREHRYY 116
           E  ++Y  Y+          E F++S +SLLP +       D CNGL+L        RYY
Sbjct: 80  ETYIDYIPYALTPTVAPEPHE-FIKSYSSLLPFDLARGDFLDCCNGLLLFVEGPIP-RYY 137

Query: 117 VCNPLTKQCVAIPKARERVLES--APALAFDPRDSSHYKIIRFVRARM--VSEAEIFSSE 172
           VCNP+TKQCVAIP  R+  LE+    +LAFDP  S HY+++ F  +++    +  +FSSE
Sbjct: 138 VCNPVTKQCVAIP--RDFTLENICTASLAFDPFKSPHYRVVCFDYSKLKPPQKLRVFSSE 195

Query: 173 TKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSIT----------DQGTIVCYNIEAPT 222
           T +W   +                +Y   G+LY  T          D   ++C+++    
Sbjct: 196 TGSWTIQETAFGYGSKKSRLAKHCIY-LDGVLYRQTASKQIDSKQIDSKRLLCFDLNRGN 254

Query: 223 EVEIVEVPDEN--YPYGRGVIELCKGVLNYANRNESKLLIWLFDDRHHNN 270
               +E+P++    P   G I L +  L Y++   + L  WL +DR  N 
Sbjct: 255 S-RAIELPEKERLAPNDYGCIGLSRRHLCYSDLVGTALHFWLLEDRCKNG 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539837|ref|XP_002510983.1| conserved hypothetical protein [Ricinus communis] gi|223550098|gb|EEF51585.1| conserved hypothetical protein [Ricinus communis]

 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/271 (32%), Positives = 138/271 (50%), Gaps = 24/271 (8%)

Query: 2   EQISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRISNLSGFLFHSTEDCMN 61
           + I  ++DL+ EI+ +LP++S+ RFK VSK W++ I + CIP++   S  L  S+    +
Sbjct: 4   KDIDETDDLMLEIVLKLPMRSLARFKCVSKTWHSRIQDFCIPKLLQ-SLQLQVSSIGREH 62

Query: 62  YFSYSDNNEGCGNDGEGFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLREHRYYVCNPL 121
           +  Y DN           + S +  LP       L D CNGL+LL    +E  Y VCNP+
Sbjct: 63  HVHYIDNTR--------VLYSCSLFLPRPILACHLLDCCNGLLLLWVCDKE--YVVCNPV 112

Query: 122 TKQCVA----IPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTWI 177
           TKQ V+    +P+ +   L    ALAFDP  S HYK++ F      +   +FSS++ +W 
Sbjct: 113 TKQYVSLKLLVPRNQVTGLLINAALAFDPSISPHYKVVLFDSRN--NRLLVFSSKSWSWN 170

Query: 178 NCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIE----APTEVEIVEVPDEN 233
             K  L+    IL +   S+Y  G I Y ++  G +V ++I+    A   V  +++P   
Sbjct: 171 PLKYELQDVLSILRWDKESIYFCGAI-YKLSKSGHVVKFSIDEEKVASDRVRAIKLP--K 227

Query: 234 YPYGRGVIELCKGVLNYANRNESKLLIWLFD 264
           Y        +  G L+YAN ++  L IW+ +
Sbjct: 228 YAPEMRCYGVSNGSLHYANVDDGNLQIWVLN 258

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357128384|ref|XP_003565853.1| PREDICTED: F-box protein At5g07610-like [Brachypodium distachyon]

 Score =  106 bits (264), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 142/278 (51%), Gaps = 28/278 (10%)

Query: 5   SLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISN----VCIPRISNLSGFLFHSTEDCM 60
           SL+EDLI EIL R+PVK + RFK VSKAW NLIS+      +P+   L+GFL+ S    +
Sbjct: 11  SLTEDLIVEILSRVPVKPLCRFKCVSKAWENLISHPEHRKKLPQ--TLAGFLYTSLSGLL 68

Query: 61  NYFSYSDNNEGCGNDGEGFVESLTSLLPSEYFPYKLFDSCNGLIL--LGSSLREHRYYVC 118
              +++  N     +      S  S LP E+   ++ D CNGL+L  L  S  +  Y +C
Sbjct: 69  PALAFT--NASPQEERYPIFPSNFSFLP-EFQDIRIMDCCNGLLLCRLWESTDDFHYVLC 125

Query: 119 NPLTKQCVAIPKARERVLESAPALAFDPR-DSSHYKIIRFVRAR----MVSEAEIFSSET 173
           NP T++   +P +       A  L FDP   SS + +   V       +++   ++SSET
Sbjct: 126 NPATEKFTTVPPSGNADNLYAARLGFDPAVSSSRFHVFELVEYEEDDPVITGVRVYSSET 185

Query: 174 KTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPT--EVEIVEVPD 231
           + W++ ++       +   + R+V+  G  L+ +TDQ  ++  + E  T  ++ +  + D
Sbjct: 186 REWVHKEVEWSDDALLESRLSRTVFLNGS-LHILTDQPAVLTVDTELKTWRKIHLSLLQD 244

Query: 232 ENYPYGRGVIELCKGVLNYANRNE----SKLLIWLFDD 265
           ++     G I+  +G L+Y N  E    ++L +++ +D
Sbjct: 245 QD-----GFIQQSQGRLHYVNFREFDSVTRLAVYILED 277

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326525693|dbj|BAJ88893.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  104 bits (260), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 92/281 (32%), Positives = 133/281 (47%), Gaps = 31/281 (11%)

Query: 6   LSEDLITEILCRLPVKSVTRFKIVSKAWNNLISN----VCIPR--ISNLSGFLFHSTEDC 59
           L+EDL+ EIL R+P KS+ RFK VSK W  +IS+      +P+  + +L+GFL+ S  D 
Sbjct: 12  LTEDLLVEILSRVPYKSLCRFKCVSKRWRGIISHPDHRKALPQYHLHDLAGFLYSSDVDK 71

Query: 60  MNYFSY---SDNNEGCGNDGEGFVESLTSLLPS-EYFPYKLFDSCNGLIL------LGSS 109
             +F     + N  G        V      LP  E F   L DSCNGL+L       GS 
Sbjct: 72  AGWFGRPVSAHNFTGVSVGTRPPVRPSLPFLPDCEQF--HLLDSCNGLLLCRRFQAFGSE 129

Query: 110 LREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIF 169
             +  Y VCNP T++ VA+P    ++      L FDP  SSH+ + RFV    V   EI+
Sbjct: 130 AFD--YVVCNPATEKWVALPGFFTKM--QTARLGFDPAVSSHFHVFRFVEDGYVKGVEIY 185

Query: 170 SSETKTWIN--CKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEVEIV 227
           SS+T  W +  C+  + P    +    +SV+  G  L  +    ++V       T  +++
Sbjct: 186 SSKTGAWSHNECRSWIFPTS--IVHESKSVFFNG--LLHLLAVESVVVAVDVEGTTWKVI 241

Query: 228 EVPDENYPYGRGVIELCKGVLNYAN---RNESKLLIWLFDD 265
             P        G I+L +G L  A      E KL IW+ +D
Sbjct: 242 PTPRPGPGVDVGFIDLSQGRLYLARCDPHREYKLSIWVLED 282

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126153|ref|XP_003564753.1| PREDICTED: F-box protein At2g40910-like [Brachypodium distachyon]

 Score =  102 bits (254), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 125/281 (44%), Gaps = 25/281 (8%)

Query: 6   LSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRISNL--SGFLFHS-------- 55
           L EDL+TE+L RLP KS+ RF+ VS  W  LIS   + R   L  SG LFH         
Sbjct: 5   LGEDLLTEVLVRLPHKSLARFQCVSTTWRALISGDYLRRRLPLITSGVLFHDGPPRPGKQ 64

Query: 56  --TEDCMN-YFSYSDNNEGCGNDGEGFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLRE 112
             T  C +   S  D  E  G  G G  E+     P  +    + D CNGL+L  ++   
Sbjct: 65  AYTYACASPSSSAQDGVEDRG--GSGVEEADMGFFPC-HATSSIIDGCNGLLLYYAA--R 119

Query: 113 HRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSE-AEIFSS 171
             ++V NP T++  A+P  R+R L S   LAFDP  S HYK++ F R        E+F S
Sbjct: 120 AAFHVVNPTTRRWAALPAPRQRTLLS--VLAFDPCASPHYKVVCFARWLPRGACVEVFDS 177

Query: 172 ETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEVEIVEVPD 231
           E+  W   +L+       +   M   +  G  ++ +   G +V  ++        V    
Sbjct: 178 ESGAWRERELDFGIDTDAMSATM---HCSGAAIHVLAYSGHVVRIDLAGTGMACAVTALP 234

Query: 232 ENYPYGRGVIELCKGVLNYANRNESKLLIWLFDDRHHNNSH 272
               Y R     C+G L YA+ + ++L +W   D   + S 
Sbjct: 235 APVSY-RARAGHCRGRLRYASSDGARLSLWELRDAEGSQSQ 274

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	279
TAIR|locus:2160334	420	AT5G07610 "AT5G07610" [Arabido	0.770	0.511	0.293	3.3e-11
UNIPROTKB|Q6AT88	309	OSJNBa0069I13.11 "Os05g0139300	0.584	0.527	0.331	4.8e-10
TAIR|locus:2202425	389	AT1G47790 "AT1G47790" [Arabido	0.870	0.624	0.256	6.8e-10
TAIR|locus:2150665	418	AT5G03970 "AT5G03970" [Arabido	0.888	0.593	0.249	8.6e-08
TAIR|locus:2092160	414	AT3G26010 "AT3G26010" [Arabido	0.845	0.570	0.249	1.1e-07
TAIR|locus:2202160	350	AT1G19160 "AT1G19160" [Arabido	0.888	0.708	0.248	6.7e-07
TAIR|locus:2036381	396	AT1G50870 "AT1G50870" [Arabido	0.612	0.431	0.284	1.1e-06
TAIR|locus:2077452	417	AT3G07870 "AT3G07870" [Arabido	0.541	0.362	0.242	2.2e-06
TAIR|locus:2202440	391	AT1G47730 "AT1G47730" [Arabido	0.899	0.641	0.232	2.5e-06
TAIR|locus:2100524	390	AT3G52320 "AT3G52320" [Arabido	0.777	0.556	0.272	3.2e-06

TAIR|locus:2160334 AT5G07610 "AT5G07610" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 3.3e-11, P = 3.3e-11
 Identities = 74/252 (29%), Positives = 108/252 (42%)

Query:     8 EDLITEILCRLPVKSVTRFKIVSKAWNNLISN-VCIPRI--SN----LSGFLFHSTEDCM 60
             +D++ +IL  LP+K++ RFK VSK W +LI+N V   R+  SN    +SGF  HS  +  
Sbjct:    35 DDVLIQILSFLPIKTLLRFKRVSKRWLSLITNPVFSNRVIKSNHPLPISGFFLHSPRE-- 92

Query:    61 NYFSYSXXXXXXXXXXXXFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLRE--H---RY 115
                 YS               SL            +  S NGL+L   S     H    Y
Sbjct:    93 --IKYSFVSLDDDATNQRISSSLPLWFTDHQTDMIIMQSTNGLLLCKCSCASSNHFNTNY 150

Query:   116 YVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARM---VSEA------ 166
             YV NP TKQ   + +    +   A +LAFDP  S HYK+   +R R     S A      
Sbjct:   151 YVYNPTTKQYTLLHQIAGHI---ALSLAFDPSRSPHYKVF-CLRGRSNNSFSSASDSELY 206

Query:   167 --EIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGI-LYSITDQGTIVCYNIEAPT- 222
               E++SS    W         P   + F   SV+  G +  Y  + +    C + +  T 
Sbjct:   207 HIEVYSSNEGLWRRVVPVPTSPSTFIEFSY-SVFWNGAVNWYGFSSRD---CLSFDINTQ 262

Query:   223 EVEIVEVPDENY 234
             E++I+ +PD  +
Sbjct:   263 EIKILPLPDHEH 274

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q6AT88 OSJNBa0069I13.11 "Os05g0139300 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 163 (62.4 bits), Expect = 4.8e-10, P = 4.8e-10
 Identities = 62/187 (33%), Positives = 88/187 (47%)

Query:     6 LSEDLITEILCRLPVKSVTRFKIVSKAWNNLISN----VCIPRISNLSGFL--FHS--TE 57
             L +DLI +IL RLP KSV RFK VS  W  LIS+      +P    LSGF+  ++    +
Sbjct:    19 LPDDLIVDILSRLPAKSVCRFKCVSWRWRRLISHRDHRKKLPH--TLSGFISRYYGPLND 76

Query:    58 D---CMNYFSYSXXXXXXXXXXXXFVE--SLTSLLPSEYFPYKLFDSCNGLILL----GS 108
             D    + +F  S             V   SL+ LL   Y      D CNGL+L      S
Sbjct:    77 DELVSIPHFD-SIDGGEEDEEEHRLVPDPSLSFLLG--YMSISPKDCCNGLLLCLCCKNS 133

Query:   109 SLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRAR--MVSEA 166
                E  Y VCNP T++ + +P+  +    ++  L FDP  S ++ +   +      ++  
Sbjct:   134 PRDESDYVVCNPATQRWIILPEIDDYDQLASIRLCFDPALSPYFHVFAILEDADGCITGV 193

Query:   167 EIFSSET 173
             EIFSSET
Sbjct:   194 EIFSSET 200

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2202425 AT1G47790 "AT1G47790" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 71/277 (25%), Positives = 121/277 (43%)

Query:     9 DLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRI-----SNLSGFLF-HSTEDCMNY 62
             DL +EIL RLPVKSV RF+ VSK W+++I++    +      S     LF     D +  
Sbjct:    28 DLASEILLRLPVKSVVRFRCVSKLWSSIITDPYFIKTYETQSSTRQSLLFCFKQSDKLFV 87

Query:    63 FSYSXXXXXXXXXXXXFVESLTSLLPSEY-FPYKLFDSCNGLILLGSSLREHRYYVCNPL 121
             FS               ++     LP E+ +P    +S +GLI            V NP 
Sbjct:    88 FSIPKHHYDSNSSSQAAIDRFQVKLPQEFSYPSPT-ESVHGLICFHVLAT---VIVWNPS 143

Query:   122 TKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFS--SETKTWINC 179
              +Q + +PK R+   E    L +DP +  H K++   R R   E ++ +  S  K+W   
Sbjct:   144 MRQFLTLPKPRKSWKELTVFLGYDPIEGKH-KVVCLPRNRTCDECQVLTLGSAQKSWRTV 202

Query:   180 KLNLKPPGHILFFVMRSVYSR--GGILYSI-----TDQGTIVCYNIEAPTEVEIVEVPDE 232
             K   K             + R   G++Y I     T    I+ +++++  + +++++P E
Sbjct:   203 KTKHKHRS------TNDTWGRCIKGVVYYIAYVYHTRVWCIMSFHVKSE-KFDMIKLPLE 255

Query:   233 NYPYGRGVIELCKGVLNYANR----NESKLLIWLFDD 265
             N  Y R V+   +G L   ++    N   + +W+ +D
Sbjct:   256 NI-Y-RDVMINYEGRLACVDKLYTLNNDGIRLWILED 290

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2150665 AT5G03970 "AT5G03970" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 8.6e-08, P = 8.6e-08
 Identities = 69/277 (24%), Positives = 117/277 (42%)

Query:     7 SEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCI---------PRISNLSGFLFHSTE 57
             S D + EIL  LP +++ +  +VSK W  +I++ C          P    L GF   S+ 
Sbjct:    25 SNDTMCEILILLPPETIYKLILVSKRWLEIIASPCFRHTYLAKWKPNFE-LIGFFVCSSM 83

Query:    58 DCMNYFSYSXXXXXXXXXXXXFVESLTSLLPSEYFPYKL---FDSCNGLILLGSSLREHR 114
                     +               S+   + S     KL    DS +GL+L G   +   
Sbjct:    84 YLGRRIDGTRRPRAEPSLPLLSTSSIGDEIESSGILKKLGYYIDSADGLLLCGRHPKA-- 141

Query:   115 YYVCNPLTKQCVAIPKARERVLESAPALAFD--PRDSSHYKIIR-----F-VRARMVSEA 166
             YY+ +P T++   +P+ R    E   +L  +  P     YK++R     F V +  V + 
Sbjct:   142 YYLWDPSTQKQQQLPRPRVHFEELCMSLISEDSPDQGFSYKVVRAECVAFPVNSTKV-KV 200

Query:   167 EIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTE-VE 225
             E FSS+T TW   +L    P  +  +    V    G++Y     G I  Y+  +  + ++
Sbjct:   201 ETFSSKTSTWSYSELICLEPLSLSPWTPGRVIK--GVVYWHARGGKIAIYDSNSEEKRID 258

Query:   226 IVEVPDENYPYGRGVI-ELCKGVLNYANRNESKLLIW 261
             ++++P + Y Y   V+ E   G L Y   N+S + +W
Sbjct:   259 VIKLP-KTYDYDEQVLGETDDGSLQYGWSNKSVMEVW 294

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092160 AT3G26010 "AT3G26010" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 66/265 (24%), Positives = 117/265 (44%)

Query:     4 ISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRISNLSGFLFHSTEDCMNYF 63
             I L++ + TEIL RLP++ + RFK VSK W + I +V   R+  +S     ST   + ++
Sbjct:     8 IHLTDAIWTEILARLPLRIIARFKSVSKTWKSTIESVYFRRLF-VSVHRKSSTSWSLMWY 66

Query:    64 SYSXXXXXXXXXXXXFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLREHRYYVCNPLTK 123
                              +SL+  +PS     +   S +GL+L+  +  +   +V NP+ +
Sbjct:    67 GQKDLVGFHGCETWGLPKSLSFYIPSSLCIIE--GSSHGLVLISEN-DDDCCFVGNPVLQ 123

Query:   124 QCVAIPKARERVLESAPALAFDPRDSSH---YKIIRF----VRARMVS---EAEIFSSET 173
             Q + IP     V  S   L     D      +K+++     V    VS      ++SSET
Sbjct:   124 QWIKIPPPP--VHSSVFGLVSRVDDDGFVLGFKVVKLAEVIVTNNYVSCSLSVFVYSSET 181

Query:   174 KTWINCKLNLKPPGHILFFVMRSVYSRGGILY--SITDQGTIVCYNI--EAPTEVEIVEV 229
               W  CK  +  P  I  F     ++  G +Y   +++ G +V Y+   E   +  ++ +
Sbjct:   182 GIW-TCK-TIHCPYQITNF---GSFTLDGTIYFDHLSEPGVLVAYDFYSEISDQFWVIPL 236

Query:   230 PDE-NYPYG---RGVIELCKGVLNY 250
             PD  N+ +    +G +   +G + Y
Sbjct:   237 PDHPNHGFNSDFKGALTTSQGFVMY 261

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2202160 AT1G19160 "AT1G19160" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 6.7e-07, P = 6.7e-07
 Identities = 73/294 (24%), Positives = 123/294 (41%)

Query:     6 LSEDLITEILCRLPVKSVTRFKIVSKAWNNLIS-----NVCIPRISNLSGFLFHSTEDCM 60
             + ED + EIL RLPVKS+ RF  VSK   ++I      N+   R S     +  +  D  
Sbjct:     2 IPEDPLVEILLRLPVKSLARFLCVSKRCYSIIRSRHFINLYQSRASTRESRVMFAFRDTN 61

Query:    61 NYFSYSXXXXXXXXXXXXFVESLTSLLPSEYFPYKLFDSC-NGLILLGSSLREH--RYYV 117
              +F ++             ++S +  +P           C NGLI +     EH  R ++
Sbjct:    62 TFFRWNFFSLSQPPSSVTNIDSTSYCMPV----------CVNGLICV-----EHMFRLWI 106

Query:   118 CNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSE--AEIFS-SETK 174
             CNP+TK+    P    R   +   + +DP +   YK++   R  +++    E+F+  +  
Sbjct:   107 CNPVTKKITLFPDCGPRKQFTTWYMGYDPINYQ-YKVLYLSREHLIAPYIVEVFTFGDEG 165

Query:   175 TW--INCKLNLKPPGHILFFVMRSVYSRGGILY-SITDQGT-IVCYNIEAPTEVEIVEVP 230
             +W  I    N   P        R V + G + Y + T  G  IV +++      + +E+P
Sbjct:   166 SWRMIEADENFHSPE------TRGVCTHGVLYYGAYTGDGAKIVRFDVRTEKFGKFIEMP 219

Query:   231 DENYP-YG--RGVIELC--KGVLNY-ANRNESKLLIWLFDDRHHNNSHSGSKAA 278
              E    +G   G+  L   +G L   A +  S   +W+ +D      H  SK +
Sbjct:   220 AEACSIHGVYLGLYTLLDYQGKLGLLATQATSTYDLWVLEDAE---KHEWSKVS 270

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2036381 AT1G50870 "AT1G50870" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 53/186 (28%), Positives = 79/186 (42%)

Query:     9 DLITEILCRLPVKSVTRFKIVSKAW-----NNLISNVCIPRISNLSGFL-FHSTEDCMNY 62
             DLI EIL RLPVKSV RF+ VSK W     +   +N    R S     L F   +D +  
Sbjct:    34 DLILEILLRLPVKSVLRFRCVSKLWLSTTTDPYFTNSYEARSSTRPSLLMFFKNKDKLFV 93

Query:    63 FSYSXXXXXX--XXXXXXFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLREHRYYVCNP 120
             F++                V+S     P +Y  +   +S +GLI    S +     + NP
Sbjct:    94 FTFPHHNQNSKETHSYSQHVDSYHIKYP-KYCCFPFTESVHGLISFRISTKP---IIWNP 149

Query:   121 LTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFS--SETKTWIN 178
               +Q + +PK  +     +  L +DP +  H K++   R     E  + +  S  + W  
Sbjct:   150 TMRQFLILPKPEKSWKGLSVFLGYDPVEGKH-KLMCMNRDNTSDECRVLTLGSAQEKWRR 208

Query:   179 CKLNLK 184
              K NLK
Sbjct:   209 IKSNLK 214

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 40/165 (24%), Positives = 68/165 (41%)

Query:     5 SLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPRISNLSG------FLFHSTED 58
             SL ED+I +I  RLP+ S+ R   V ++W ++++     R+S+ S        L H    
Sbjct:    27 SLPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQH--GRLSSSSSSPTKPCLLLHCDSP 84

Query:    59 CMNYFSY-SXXXXXXXXXXXXFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLREHRYYV 117
               N   +              F     S +P     + +  SCNGL+ L  SL     Y+
Sbjct:    85 IRNGLHFLDLSEEEKRIKTKKFTLRFASSMPE----FDVVGSCNGLLCLSDSLYNDSLYL 140

Query:   118 CNPLTKQCVAIPKARERVLESAPALAFDPRD-SSHYKIIRFVRAR 161
              NP T   + +P+   +  +      F   + +  YK+++ V  R
Sbjct:   141 YNPFTTNSLELPECSNKYHDQELVFGFGFHEMTKEYKVLKIVYFR 185

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2202440 AT1G47730 "AT1G47730" [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 65/279 (23%), Positives = 113/279 (40%)

Query:     5 SLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPR-ISNLSGFLFHSTE-DCMNY 62
             SL  DL +EI  RLP KSV RF+ VSK W+++ +              +F   E D    
Sbjct:    24 SLPLDLTSEIFSRLPAKSVVRFRCVSKLWSSITTAPYFTNSFETRPNLMFFFKEGDKFFV 83

Query:    63 FSYSXXXX----XXXXXXXXFVESLTSLLPSEYFPYKLFDSCNGLILLGSSLREHRYYVC 118
             F+                   ++S  +  P       L +S +GLI    +       + 
Sbjct:    84 FTIPQHNQNPNESYSYSSSEIIDSYHTTYPKRCCVTTLTESVHGLICFRKAATP---IIW 140

Query:   119 NPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFS-SETKTWI 177
             NP  ++   + K  ER      +L +DP D  H K++         E  + +    + W 
Sbjct:   141 NPTMRKFKPLRKLDERWKNIKVSLGYDPVDGKH-KVVCMPYGNAFYECRVLTLGSDQEWR 199

Query:   178 NCKLNLK-PP----GHILFFVMRSVYSRGGILY--SITDQGTIVCYNIEAPTE-VEIVEV 229
               K N K  P    G + +   R +    G++Y  + T+ G ++  + +  +E  +++E+
Sbjct:   200 TVKTNHKNSPFTFHGGVCYRQSRCI---NGVIYYRADTNSGRVIL-SFDVRSERFDVIEL 255

Query:   230 P-DENYPYGRGVIELCKGVLNYANRNESK--LLIWLFDD 265
             P DEN+  G  ++   KG L     N  K    +W+ ++
Sbjct:   256 PWDENF--GLVMMMSYKGRLACLGFNHEKNSRSMWVLEN 292

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2100524 AT3G52320 "AT3G52320" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 68/250 (27%), Positives = 101/250 (40%)

Query:     6 LSEDLITEILCRLPVKSVTRFKIVSKAWNNLI-SNVCIPRISNLSG--FLFHSTEDCMNY 62
             + E+++ +IL RLP KS+ RFK VSK W +LI S     R    S    LF    D  N 
Sbjct:    27 IPEEMLIDILIRLPAKSLMRFKCVSKLWLSLITSRYFTNRFFKPSSPSCLFAYLVDRENQ 86

Query:    63 FSYSXXXXXXXXXXXXFVESLTSLLPSEYFPYK---LFDSCNGLILLGSSLREHRYYVCN 119
               Y                S++ +      P     L ++  GL+   +     R  VCN
Sbjct:    87 SKYLLLQSSSSSRHDHSDTSVSVIDQHSTIPIMGGYLVNAARGLLCYRTG---RRVKVCN 143

Query:   120 PLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETK----- 174
             P T+Q V +P  R +          DP     YK++      +  E  +  SE +     
Sbjct:   144 PSTRQIVELPIMRSKT-NVWNWFGHDPFHDE-YKVLSLFW-EVTKEQTVVRSEHQVLVLG 200

Query:   175 ---TWINCKLNLKPPGHILFFVMRSVYSRG----GILY--SITDQGTIVCYNIEAPTE-V 224
                +W N K +  P  H  F      YSRG    G+LY  + TD    V  + +  +E  
Sbjct:   201 VGASWRNTKSHHTP--HRPFHP----YSRGMTIDGVLYYSARTDANRCVLMSFDLSSEEF 254

Query:   225 EIVEVPDENY 234
              ++E+P EN+
Sbjct:   255 NLIELPFENW 264

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	279
pfam00646	48	pfam00646, F-box, F-box domain	3e-05
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	7e-05
TIGR01640	230	TIGR01640, F_box_assoc_1, F-box protein interactio	5e-04

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 5  SLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCI 42
           L +DL+ EIL RL  K + R  +VSK W +L+ ++ +
Sbjct: 5  DLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKL 42

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 39.0 bits (92), Expect = 7e-05
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 6  LSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCI 42
          L ++++ EIL +L  K + R + VS+ W +LI +   
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDF 37

Length = 41

>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 19/133 (14%)

Query: 97  FDSCNGLILLGSSLREHRYYVCNPLTKQCVAIPK---ARERVLESAPALAFDPRDSSHYK 153
              C+GLI         R  V NP T Q   +P     R         L +DP +   YK
Sbjct: 1   VVPCDGLI---CFSYGKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQ-YK 56

Query: 154 IIRFVRARMV---SEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQ 210
           ++ F         SE ++++  + +W    +   PP H L    R V   G + Y     
Sbjct: 57  VLCFSDRSGNRNQSEHQVYTLGSNSWR--TIECSPPHHPLK--SRGVCINGVLYYLAYTL 112

Query: 211 GT-----IVCYNI 218
            T     IV +++
Sbjct: 113 KTNPDYFIVSFDV 125

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	279
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.97
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	99.43
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	99.43
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	99.27
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.04
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.88
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.87
PHA02713	557	hypothetical protein; Provisional	98.85
PHA02713	557	hypothetical protein; Provisional	98.8
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.65
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	98.64
PLN02153	341	epithiospecifier protein	98.64
PHA03098	534	kelch-like protein; Provisional	98.61
PHA02790	480	Kelch-like protein; Provisional	98.58
PLN02153	341	epithiospecifier protein	98.58
PHA03098	534	kelch-like protein; Provisional	98.57
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	98.57
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.55
PLN02193	470	nitrile-specifier protein	98.49
PHA02790	480	Kelch-like protein; Provisional	98.41
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	98.39
PLN02193	470	nitrile-specifier protein	98.3
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	98.24
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	98.16
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	98.11
KOG4693	392	consensus Uncharacterized conserved protein, conta	97.97
KOG1230	521	consensus Protein containing repeated kelch motifs	97.94
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.63
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	97.63
KOG4693	392	consensus Uncharacterized conserved protein, conta	97.07
KOG2997	366	consensus F-box protein FBX9 [General function pre	96.97
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	96.59
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	96.28
PF13964	50	Kelch_6: Kelch motif	95.89
PF07762	131	DUF1618: Protein of unknown function (DUF1618); In	95.67
KOG1230	521	consensus Protein containing repeated kelch motifs	95.55
PF13964	50	Kelch_6: Kelch motif	95.51
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	95.41
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	94.84
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	93.8
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.46
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	92.63
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	92.31
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	91.62
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	90.58
KOG4341	483	consensus F-box protein containing LRR [General fu	90.44
smart00284	255	OLF Olfactomedin-like domains.	89.8
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	89.42
PF12458	448	DUF3686: ATPase involved in DNA repair ; InterPro:	88.45
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	87.48
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	87.37
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	87.05
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	83.41
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	82.57
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	81.94
PF13013	109	F-box-like_2: F-box-like domain	81.87
PF13415	49	Kelch_3: Galactose oxidase, central domain	80.67
smart00612	47	Kelch Kelch domain.	80.6

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.97  E-value=5.1e-29  Score=202.91  Aligned_cols=168  Identities=24%  Similarity=0.404  Sum_probs=129.8

Q ss_pred             eeccCcEEEEeeecCCeeEEEEcCCCccccccCCCCcc---CCCcccEEEecCCCCCceEEEEEEecc---ccceEEEEe
Q 036099           97 FDSCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARER---VLESAPALAFDPRDSSHYKIIRFVRAR---MVSEAEIFS  170 (279)
Q Consensus        97 ~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~---~~~~~~~lg~d~~~~~~ykvv~~~~~~---~~~~~~vy~  170 (279)
                      +++||||||+...   ..++||||+||+++.||+++..   .....+++|||+.. ++||||++....   ....++||+
T Consensus         1 ~~sCnGLlc~~~~---~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~-~~YKVv~~~~~~~~~~~~~~~Vys   76 (230)
T TIGR01640         1 VVPCDGLICFSYG---KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIE-KQYKVLCFSDRSGNRNQSEHQVYT   76 (230)
T ss_pred             CcccceEEEEecC---CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccC-CcEEEEEEEeecCCCCCccEEEEE
Confidence            4789999988762   6899999999999999977542   12225799999986 999999998642   256899999


Q ss_pred             CCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEecCC------eEEEEecCCCeEE-EEecCCCCCCC-CCCeeEE
Q 036099          171 SETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQG------TIVCYNIEAPTEV-EIVEVPDENYP-YGRGVIE  242 (279)
Q Consensus       171 s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~~~------~i~~fD~~~~~~~-~i~~~P~~~~~-~~~~~l~  242 (279)
                      +++++||.+...  |. ... ....+|++| |.+||++...      .|++||+.+|+|+ .+ ++|..... .....|+
T Consensus        77 ~~~~~Wr~~~~~--~~-~~~-~~~~~v~~~-G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i-~~P~~~~~~~~~~~L~  150 (230)
T TIGR01640        77 LGSNSWRTIECS--PP-HHP-LKSRGVCIN-GVLYYLAYTLKTNPDYFIVSFDVSSERFKEFI-PLPCGNSDSVDYLSLI  150 (230)
T ss_pred             eCCCCccccccC--CC-Ccc-ccCCeEEEC-CEEEEEEEECCCCCcEEEEEEEcccceEeeee-ecCccccccccceEEE
Confidence            999999998743  22 111 223489999 9999998421      7999999999999 58 88875321 2246789


Q ss_pred             eeCCeEEEEEeCC--CeEEEEEeccCCCCCccccccc
Q 036099          243 LCKGVLNYANRNE--SKLLIWLFDDRHHNNSHSGSKA  277 (279)
Q Consensus       243 ~~~G~L~~~~~~~--~~~~vW~l~~~~~~~~w~w~k~  277 (279)
                      +.+|+|+++....  .+++||+|+++++.+   |+|.
T Consensus       151 ~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~---W~k~  184 (230)
T TIGR01640       151 NYKGKLAVLKQKKDTNNFDLWVLNDAGKQE---WSKL  184 (230)
T ss_pred             EECCEEEEEEecCCCCcEEEEEECCCCCCc---eeEE
Confidence            9999999999753  569999999887654   5563

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=99.43  E-value=3.1e-11  Score=102.55  Aligned_cols=245  Identities=15%  Similarity=0.195  Sum_probs=129.7

Q ss_pred             CCCCCHHHHHHHHhcCC-hhhhHHHhhhhHHHHhhhcCC----CCCCccCCcceEEcccCccccccccCCCCCCCCCCCC
Q 036099            3 QISLSEDLITEILCRLP-VKSVTRFKIVSKAWNNLISNV----CIPRISNLSGFLFHSTEDCMNYFSYSDNNEGCGNDGE   77 (279)
Q Consensus         3 ~~~LP~Dll~eIL~rLP-~~~l~r~r~VcK~W~~li~~~----~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (279)
                      .+.||+|||..|..||| ..++.|+|+|||+||+.+...    .|.+  . ..++.....   ...++..  .++.... 
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~~~~~~~--~-~~~~~~~~~---~~~~~~~--~~~~~~~-   74 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGKKNPFRT--R-PLILFNPIN---PSETLTD--DRSYISR-   74 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccccCCccc--c-cccccCccc---CCCCccc--ccccccc-
Confidence            58999999999999998 789999999999999988742    1443  1 111111100   0000000  0000000 


Q ss_pred             CcccccCCCCCCCCCCc-eEeeccCcEEEEeeec-CCeeEEEEcCCCccccccCCCCcc-------CCCcccEE-Ee---
Q 036099           78 GFVESLTSLLPSEYFPY-KLFDSCNGLILLGSSL-REHRYYVCNPLTKQCVAIPKARER-------VLESAPAL-AF---  144 (279)
Q Consensus        78 ~~~~~~~~~~p~~~~~~-~~~~s~~Glll~~~~~-~~~~~~v~NP~T~~~~~lP~~~~~-------~~~~~~~l-g~---  144 (279)
                          ....+.+....+. ...++.+|+|.-.... ...++.+.||+++.-..+|+.-..       .....+.+ +.   
T Consensus        75 ----~~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~~~~~~  150 (373)
T PLN03215         75 ----PGAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVLDWAKR  150 (373)
T ss_pred             ----ccceeeeeEEEEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEEecccc
Confidence                0000011000001 0113568888775522 457788999999997777752111       00000011 11   


Q ss_pred             ---------------cCCCCCceEEEEEEeccccceEEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec
Q 036099          145 ---------------DPRDSSHYKIIRFVRARMVSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD  209 (279)
Q Consensus       145 ---------------d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~  209 (279)
                                     ......+|.|+++...+.   +...  ..++|..++..   .    .....-++++ |++|.+..
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g~---l~~w--~~~~Wt~l~~~---~----~~~~DIi~~k-GkfYAvD~  217 (373)
T PLN03215        151 RETRPGYQRSALVKVKEGDNHRDGVLGIGRDGK---INYW--DGNVLKALKQM---G----YHFSDIIVHK-GQTYALDS  217 (373)
T ss_pred             cccccceeEEEEEEeecCCCcceEEEEEeecCc---Eeee--cCCeeeEccCC---C----ceeeEEEEEC-CEEEEEcC
Confidence                           111001244444443221   1111  14678777532   1    1245678999 99999988


Q ss_pred             CCeEEEEecCCCeEEEEec-CCCCC---CCCCCeeEEeeCCeEEEEEeCC-----------------CeEEEEEeccCCC
Q 036099          210 QGTIVCYNIEAPTEVEIVE-VPDEN---YPYGRGVIELCKGVLNYANRNE-----------------SKLLIWLFDDRHH  268 (279)
Q Consensus       210 ~~~i~~fD~~~~~~~~i~~-~P~~~---~~~~~~~l~~~~G~L~~~~~~~-----------------~~~~vW~l~~~~~  268 (279)
                      .+.+.++|..-+ .+.+.. +....   .......++++.|+|++|....                 ..++|+.++... 
T Consensus       218 ~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~-  295 (373)
T PLN03215        218 IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDEL-  295 (373)
T ss_pred             CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCC-
Confidence            899999995432 233311 11111   1123467889999999998621                 358889887432 


Q ss_pred             CCcccccccC
Q 036099          269 NNSHSGSKAA  278 (279)
Q Consensus       269 ~~~w~w~k~~  278 (279)
                         -.|.+|.
T Consensus       296 ---~~WveV~  302 (373)
T PLN03215        296 ---AKWMEVK  302 (373)
T ss_pred             ---CcEEEec
Confidence               2466653

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=99.43  E-value=1.1e-12  Score=96.84  Aligned_cols=75  Identities=20%  Similarity=0.380  Sum_probs=61.6

Q ss_pred             eEEEeCCeEEEEec-----CCeEEEEecCCCeEEEEecCCCC-CCCCCCeeEEeeCCeEEEEEeCC----CeEEEEEecc
Q 036099          196 SVYSRGGILYSITD-----QGTIVCYNIEAPTEVEIVEVPDE-NYPYGRGVIELCKGVLNYANRNE----SKLLIWLFDD  265 (279)
Q Consensus       196 ~v~~~~g~ly~l~~-----~~~i~~fD~~~~~~~~i~~~P~~-~~~~~~~~l~~~~G~L~~~~~~~----~~~~vW~l~~  265 (279)
                      ++++| |.+||++.     ...|++||+.+|+|+.| ++|.. ........|.+++|+|+++....    ..++||+|+|
T Consensus         1 gicin-Gvly~~a~~~~~~~~~IvsFDv~~E~f~~i-~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD   78 (129)
T PF08268_consen    1 GICIN-GVLYWLAWSEDSDNNVIVSFDVRSEKFRFI-KLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLED   78 (129)
T ss_pred             CEEEC-cEEEeEEEECCCCCcEEEEEEcCCceEEEE-EeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeec
Confidence            57899 99999985     49999999999999999 99922 23345588999999999998765    3599999999


Q ss_pred             CCCCCccc
Q 036099          266 RHHNNSHS  273 (279)
Q Consensus       266 ~~~~~~w~  273 (279)
                      ++++ .|+
T Consensus        79 ~~k~-~Ws   85 (129)
T PF08268_consen   79 YEKQ-EWS   85 (129)
T ss_pred             cccc-eEE
Confidence            8864 344

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=99.27  E-value=3e-11  Score=92.95  Aligned_cols=79  Identities=16%  Similarity=0.203  Sum_probs=59.6

Q ss_pred             eEEEeCCeEEEEec----C--CeEEEEecCCCeE-EEEecCCCCCC-CCCCeeEEe-eCCeEEEEEeCC--CeEEEEEec
Q 036099          196 SVYSRGGILYSITD----Q--GTIVCYNIEAPTE-VEIVEVPDENY-PYGRGVIEL-CKGVLNYANRNE--SKLLIWLFD  264 (279)
Q Consensus       196 ~v~~~~g~ly~l~~----~--~~i~~fD~~~~~~-~~i~~~P~~~~-~~~~~~l~~-~~G~L~~~~~~~--~~~~vW~l~  264 (279)
                      +|++| |++||++.    .  ..|++||+.+|+| +.+ ++|.... ......|.. .+++||++....  ..++||+|+
T Consensus         1 gV~vn-G~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~-~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~   78 (164)
T PF07734_consen    1 GVFVN-GALHWLAYDENNDEKDFILSFDLSTEKFGRSL-PLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMK   78 (164)
T ss_pred             CEEEC-CEEEeeEEecCCCCceEEEEEeccccccCCEE-CCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEe
Confidence            58999 99999992    1  1799999999999 888 9998644 233355643 478999997533  579999999


Q ss_pred             cCCCCCccccccc
Q 036099          265 DRHHNNSHSGSKA  277 (279)
Q Consensus       265 ~~~~~~~w~w~k~  277 (279)
                      +++.+ .-+|+|.
T Consensus        79 ~~~~~-~~SWtK~   90 (164)
T PF07734_consen   79 KYGYG-KESWTKL   90 (164)
T ss_pred             eeccC-cceEEEE
Confidence            86643 4577775

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.04  E-value=2.1e-10  Score=68.72  Aligned_cols=41  Identities=20%  Similarity=0.460  Sum_probs=35.7

Q ss_pred             CCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCCCC
Q 036099            3 QISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIP   43 (279)
Q Consensus         3 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~   43 (279)
                      +..||+|++.+||++||++++.+++.|||+|+.++.++.+.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW   41 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLW   41 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhh
Confidence            57899999999999999999999999999999999887543

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.88  E-value=6.8e-10  Score=66.85  Aligned_cols=42  Identities=29%  Similarity=0.554  Sum_probs=35.0

Q ss_pred             CCCCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCCC
Q 036099            1 MEQISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCI   42 (279)
Q Consensus         1 ~~~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F   42 (279)
                      |++..||+|++.+||.+|+.+++.+++.|||+|++++.+..+
T Consensus         1 ~~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~   42 (48)
T PF00646_consen    1 FPLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRL   42 (48)
T ss_dssp             -HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHH
T ss_pred             CCHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCc
Confidence            457789999999999999999999999999999999987653

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.87  E-value=2.6e-09  Score=61.90  Aligned_cols=39  Identities=33%  Similarity=0.608  Sum_probs=36.4

Q ss_pred             CCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCCCCC
Q 036099            6 LSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPR   44 (279)
Q Consensus         6 LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~   44 (279)
                      ||+|++.+||.+|+.+++.++++|||+|+.++.++.+.+
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~   39 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF   39 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            799999999999999999999999999999999887654

>PHA02713 hypothetical protein; Provisional

Probab=98.85  E-value=1.9e-07  Score=85.48  Aligned_cols=167  Identities=11%  Similarity=0.024  Sum_probs=105.2

Q ss_pred             ceEeeccCcEEEEeeecC----CeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEecc--------
Q 036099           94 YKLFDSCNGLILLGSSLR----EHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRAR--------  161 (279)
Q Consensus        94 ~~~~~s~~Glll~~~~~~----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~--------  161 (279)
                      ...+++.+|.|.+..+..    ...+.++||.|++|..+|+++....... ...++    +.-.|++.....        
T Consensus       344 ~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~-~~~~~----g~IYviGG~~~~~~~~~~~~  418 (557)
T PHA02713        344 RFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYG-MCVLD----QYIYIIGGRTEHIDYTSVHH  418 (557)
T ss_pred             ceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccccccc-EEEEC----CEEEEEeCCCcccccccccc
Confidence            345566677776655321    2457899999999999999876433221 11222    222333322110        


Q ss_pred             -----------ccceEEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEecC-------CeEEEEecCC-Ce
Q 036099          162 -----------MVSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQ-------GTIVCYNIEA-PT  222 (279)
Q Consensus       162 -----------~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~~-------~~i~~fD~~~-~~  222 (279)
                                 ....+++|++++++|..+.....  .   ......+.++ |++|.+++.       ..+-.||+.+ ++
T Consensus       419 ~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~--~---r~~~~~~~~~-~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~  492 (557)
T PHA02713        419 MNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT--G---TIRPGVVSHK-DDIYVVCDIKDEKNVKTCIFRYNTNTYNG  492 (557)
T ss_pred             cccccccccccccceEEEECCCCCeEeecCCCCc--c---cccCcEEEEC-CEEEEEeCCCCCCccceeEEEecCCCCCC
Confidence                       13468999999999998876532  1   1234568888 999999842       2467999999 89


Q ss_pred             EEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCCCeEEEEEeccCCCCCcccccccC
Q 036099          223 EVEIVEVPDENYPYGRGVIELCKGVLNYANRNESKLLIWLFDDRHHNNSHSGSKAA  278 (279)
Q Consensus       223 ~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~vW~l~~~~~~~~w~w~k~~  278 (279)
                      |+.+.++|..   .....++..+|+|++++..+...    ..+.-+...=.|+.++
T Consensus       493 W~~~~~m~~~---r~~~~~~~~~~~iyv~Gg~~~~~----~~e~yd~~~~~W~~~~  541 (557)
T PHA02713        493 WELITTTESR---LSALHTILHDNTIMMLHCYESYM----LQDTFNVYTYEWNHIC  541 (557)
T ss_pred             eeEccccCcc---cccceeEEECCEEEEEeeeccee----ehhhcCcccccccchh
Confidence            9998556653   23456677899999999865421    1222223344676664

>PHA02713 hypothetical protein; Provisional

Probab=98.80  E-value=4.8e-07  Score=82.94  Aligned_cols=145  Identities=10%  Similarity=0.019  Sum_probs=94.6

Q ss_pred             EeeccCcEEEEeeecC-----CeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEecc-ccceEEEE
Q 036099           96 LFDSCNGLILLGSSLR-----EHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRAR-MVSEAEIF  169 (279)
Q Consensus        96 ~~~s~~Glll~~~~~~-----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~-~~~~~~vy  169 (279)
                      .++..+|.|.+..+..     ...++.+||.+++|..+|+++..+.... ....+    +.-.|++..... ....+++|
T Consensus       298 ~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~-~~~~~----g~IYviGG~~~~~~~~sve~Y  372 (557)
T PHA02713        298 ASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS-LAVID----DTIYAIGGQNGTNVERTIECY  372 (557)
T ss_pred             EEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee-EEEEC----CEEEEECCcCCCCCCceEEEE
Confidence            3455577766655321     2457899999999999999875432221 11122    222333322111 14569999


Q ss_pred             eCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEecC------------------------CeEEEEecCCCeEEE
Q 036099          170 SSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQ------------------------GTIVCYNIEAPTEVE  225 (279)
Q Consensus       170 ~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~~------------------------~~i~~fD~~~~~~~~  225 (279)
                      ++.+++|...+..+.|     ......+.++ |++|.+++.                        ..+.+||+.+++|+.
T Consensus       373 dp~~~~W~~~~~mp~~-----r~~~~~~~~~-g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~  446 (557)
T PHA02713        373 TMGDDKWKMLPDMPIA-----LSSYGMCVLD-QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWET  446 (557)
T ss_pred             ECCCCeEEECCCCCcc-----cccccEEEEC-CEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEee
Confidence            9999999988765321     1233567788 999999842                        358899999999999


Q ss_pred             EecCCCCCCCCCCeeEEeeCCeEEEEEeC
Q 036099          226 IVEVPDENYPYGRGVIELCKGVLNYANRN  254 (279)
Q Consensus       226 i~~~P~~~~~~~~~~l~~~~G~L~~~~~~  254 (279)
                      +.++|..   .....++..+|+|++++..
T Consensus       447 v~~m~~~---r~~~~~~~~~~~IYv~GG~  472 (557)
T PHA02713        447 LPNFWTG---TIRPGVVSHKDDIYVVCDI  472 (557)
T ss_pred             cCCCCcc---cccCcEEEECCEEEEEeCC
Confidence            8444432   2234567789999999864

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.65  E-value=1.2e-06  Score=80.18  Aligned_cols=148  Identities=14%  Similarity=0.118  Sum_probs=99.5

Q ss_pred             ceEeeccCcEEEEeeecC-----CeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEec-cccceEE
Q 036099           94 YKLFDSCNGLILLGSSLR-----EHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRA-RMVSEAE  167 (279)
Q Consensus        94 ~~~~~s~~Glll~~~~~~-----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~-~~~~~~~  167 (279)
                      ..-++..+|.|.+..+.+     .+.+..+||.+++|..+|++...+..    +|..... +.-.+|+.... .....+|
T Consensus       325 ~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~----~~v~~l~-g~iYavGG~dg~~~l~svE  399 (571)
T KOG4441|consen  325 RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD----FGVAVLD-GKLYAVGGFDGEKSLNSVE  399 (571)
T ss_pred             cccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc----ceeEEEC-CEEEEEeccccccccccEE
Confidence            444556677776665332     35688999999999999999764322    2221111 22222222221 1266799


Q ss_pred             EEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec----C---CeEEEEecCCCeEEEEecCCCCCCCCCCee
Q 036099          168 IFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD----Q---GTIVCYNIEAPTEVEIVEVPDENYPYGRGV  240 (279)
Q Consensus       168 vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~----~---~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~  240 (279)
                      .|++.+++|.....+.  .   .......+.++ |.+|-+++    .   ..+-.||+.+++|+.+++++-   ......
T Consensus       400 ~YDp~~~~W~~va~m~--~---~r~~~gv~~~~-g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~---~R~~~g  470 (571)
T KOG4441|consen  400 CYDPVTNKWTPVAPML--T---RRSGHGVAVLG-GKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT---RRSGFG  470 (571)
T ss_pred             EecCCCCcccccCCCC--c---ceeeeEEEEEC-CEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc---ccccce
Confidence            9999999999887652  2   23344678888 99999993    2   689999999999999833443   223344


Q ss_pred             EEeeCCeEEEEEeCC
Q 036099          241 IELCKGVLNYANRNE  255 (279)
Q Consensus       241 l~~~~G~L~~~~~~~  255 (279)
                      ++..+|+|++++..+
T Consensus       471 ~a~~~~~iYvvGG~~  485 (571)
T KOG4441|consen  471 VAVLNGKIYVVGGFD  485 (571)
T ss_pred             EEEECCEEEEECCcc
Confidence            788899999999865

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=98.64  E-value=2.5e-06  Score=73.11  Aligned_cols=152  Identities=12%  Similarity=0.093  Sum_probs=90.1

Q ss_pred             EeeccCcEEEEeeec----CCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeC
Q 036099           96 LFDSCNGLILLGSSL----REHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSS  171 (279)
Q Consensus        96 ~~~s~~Glll~~~~~----~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s  171 (279)
                      ..+..+|.|.+....    ....++++||.|++|..+|+++...+.......++    +.-.|+.-........+++|+.
T Consensus       118 ~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~----~~iYv~GG~~~~~~~~~~~yd~  193 (323)
T TIGR03548       118 SACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQ----NELYVFGGGSNIAYTDGYKYSP  193 (323)
T ss_pred             eEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEEC----CEEEEEcCCCCccccceEEEec
Confidence            344557776665421    24578999999999999987653222111111111    2223333221111345789999


Q ss_pred             CCCCccccccCCCCCceeeeeccC-eEEEeCCeEEEEecC--------------------------------------Ce
Q 036099          172 ETKTWINCKLNLKPPGHILFFVMR-SVYSRGGILYSITDQ--------------------------------------GT  212 (279)
Q Consensus       172 ~~~~W~~~~~~~~p~~~~~~~~~~-~v~~~~g~ly~l~~~--------------------------------------~~  212 (279)
                      ++++|+.+................ .+..+ |++|.++..                                      ..
T Consensus       194 ~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (323)
T TIGR03548       194 KKNQWQKVADPTTDSEPISLLGAASIKINE-SLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRK  272 (323)
T ss_pred             CCCeeEECCCCCCCCCceeccceeEEEECC-CEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCce
Confidence            999999886542100011111122 34446 899998832                                      46


Q ss_pred             EEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeC
Q 036099          213 IVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRN  254 (279)
Q Consensus       213 i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~  254 (279)
                      +.+||+.+++|+.+.++|..  ......++..+++|+++...
T Consensus       273 v~~yd~~~~~W~~~~~~p~~--~r~~~~~~~~~~~iyv~GG~  312 (323)
T TIGR03548       273 ILIYNVRTGKWKSIGNSPFF--ARCGAALLLTGNNIFSINGE  312 (323)
T ss_pred             EEEEECCCCeeeEccccccc--ccCchheEEECCEEEEEecc
Confidence            99999999999998445532  12234567779999999864

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02153 epithiospecifier protein

Probab=98.64  E-value=3.2e-06  Score=72.99  Aligned_cols=138  Identities=14%  Similarity=0.080  Sum_probs=79.3

Q ss_pred             eeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEecc-ccceEEEEeCCCCCccccccCCCCCceeee
Q 036099          113 HRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRAR-MVSEAEIFSSETKTWINCKLNLKPPGHILF  191 (279)
Q Consensus       113 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~-~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~  191 (279)
                      ..++++|+.+++|..+|+..........+....... +...|+.-.... ....+++|+..+++|+..+....+......
T Consensus        50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R  128 (341)
T PLN02153         50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVG-TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEAR  128 (341)
T ss_pred             CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEEC-CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCc
Confidence            468999999999999876532111111111111111 222222221111 134689999999999977543110001111


Q ss_pred             eccCeEEEeCCeEEEEecC------------CeEEEEecCCCeEEEEecCCCC-CCCCCCeeEEeeCCeEEEEEe
Q 036099          192 FVMRSVYSRGGILYSITDQ------------GTIVCYNIEAPTEVEIVEVPDE-NYPYGRGVIELCKGVLNYANR  253 (279)
Q Consensus       192 ~~~~~v~~~~g~ly~l~~~------------~~i~~fD~~~~~~~~i~~~P~~-~~~~~~~~l~~~~G~L~~~~~  253 (279)
                      .....+..+ +++|.++..            ..+.+||+.+++|+.+ +.+.. ........++..+|+|+++..
T Consensus       129 ~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l-~~~~~~~~~r~~~~~~~~~~~iyv~GG  201 (341)
T PLN02153        129 TFHSMASDE-NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQL-PDPGENFEKRGGAGFAVVQGKIWVVYG  201 (341)
T ss_pred             eeeEEEEEC-CEEEEECCccCCCccCCCcccceEEEEECCCCeEeeC-CCCCCCCCCCCcceEEEECCeEEEEec
Confidence            233556778 999999842            2578999999999998 54321 111222345667999998864

>PHA03098 kelch-like protein; Provisional

Probab=98.61  E-value=4e-06  Score=76.86  Aligned_cols=155  Identities=14%  Similarity=0.127  Sum_probs=96.4

Q ss_pred             eeccCcEEEEeeecC----CeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccc--cceEEEEe
Q 036099           97 FDSCNGLILLGSSLR----EHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARM--VSEAEIFS  170 (279)
Q Consensus        97 ~~s~~Glll~~~~~~----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~--~~~~~vy~  170 (279)
                      +++.+|.+.+..+..    ...+.++||.|++|..+|+++........ ...+    +...|++......  ...+++|+
T Consensus       338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~-~~~~----~~iYv~GG~~~~~~~~~~v~~yd  412 (534)
T PHA03098        338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCV-VNVN----NLIYVIGGISKNDELLKTVECFS  412 (534)
T ss_pred             EEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceE-EEEC----CEEEEECCcCCCCcccceEEEEe
Confidence            344566666655321    34578999999999999988754322221 1111    3333333221111  45789999


Q ss_pred             CCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEecC---------CeEEEEecCCCeEEEEecCCCCCCCCCCeeE
Q 036099          171 SETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQ---------GTIVCYNIEAPTEVEIVEVPDENYPYGRGVI  241 (279)
Q Consensus       171 s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~~---------~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l  241 (279)
                      ..+++|+.....  |...   ....++.++ |.+|.+++.         ..+..||+.+++|+.+..+|..   .....+
T Consensus       413 ~~t~~W~~~~~~--p~~r---~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~---r~~~~~  483 (534)
T PHA03098        413 LNTNKWSKGSPL--PISH---YGGCAIYHD-GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP---RINASL  483 (534)
T ss_pred             CCCCeeeecCCC--Cccc---cCceEEEEC-CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc---cccceE
Confidence            999999988665  3211   233567778 999999842         2489999999999998444432   122344


Q ss_pred             EeeCCeEEEEEeCCC---eEEEEEecc
Q 036099          242 ELCKGVLNYANRNES---KLLIWLFDD  265 (279)
Q Consensus       242 ~~~~G~L~~~~~~~~---~~~vW~l~~  265 (279)
                      +..+|+|++++....   .-.|+..+.
T Consensus       484 ~~~~~~iyv~GG~~~~~~~~~v~~yd~  510 (534)
T PHA03098        484 CIFNNKIYVVGGDKYEYYINEIEVYDD  510 (534)
T ss_pred             EEECCEEEEEcCCcCCcccceeEEEeC
Confidence            556999999986541   224666653

>PHA02790 Kelch-like protein; Provisional

Probab=98.58  E-value=3.1e-06  Score=76.36  Aligned_cols=143  Identities=10%  Similarity=-0.013  Sum_probs=93.2

Q ss_pred             EeeccCcEEEEeeec-CCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCC
Q 036099           96 LFDSCNGLILLGSSL-REHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETK  174 (279)
Q Consensus        96 ~~~s~~Glll~~~~~-~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~  174 (279)
                      ..+..+|.+.+..+. ....+..+||.+++|..+|+++...... ....++    +.-.|++... +....+++|+++++
T Consensus       313 ~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~~~~~----g~IYviGG~~-~~~~~ve~ydp~~~  386 (480)
T PHA02790        313 SGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AVASIN----NVIYVIGGHS-ETDTTTEYLLPNHD  386 (480)
T ss_pred             eEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EEEEEC----CEEEEecCcC-CCCccEEEEeCCCC
Confidence            344567777666532 2245678999999999999987543322 222222    2223333221 12356899999999


Q ss_pred             CccccccCCCCCceeeeeccCeEEEeCCeEEEEecCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeC
Q 036099          175 TWINCKLNLKPPGHILFFVMRSVYSRGGILYSITDQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRN  254 (279)
Q Consensus       175 ~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~  254 (279)
                      +|...+....|  .   .....+.++ |++|.+++  ..-.||+.+++|+.+.++|..   .....++..+|+|++++..
T Consensus       387 ~W~~~~~m~~~--r---~~~~~~~~~-~~IYv~GG--~~e~ydp~~~~W~~~~~m~~~---r~~~~~~v~~~~IYviGG~  455 (480)
T PHA02790        387 QWQFGPSTYYP--H---YKSCALVFG-RRLFLVGR--NAEFYCESSNTWTLIDDPIYP---RDNPELIIVDNKLLLIGGF  455 (480)
T ss_pred             EEEeCCCCCCc--c---ccceEEEEC-CEEEEECC--ceEEecCCCCcEeEcCCCCCC---ccccEEEEECCEEEEECCc
Confidence            99988665221  1   223556788 99999984  467899999999998444432   2334566789999999975


Q ss_pred             C
Q 036099          255 E  255 (279)
Q Consensus       255 ~  255 (279)
                      .
T Consensus       456 ~  456 (480)
T PHA02790        456 Y  456 (480)
T ss_pred             C
Confidence            3

>PLN02153 epithiospecifier protein

Probab=98.58  E-value=4.5e-06  Score=72.07  Aligned_cols=158  Identities=9%  Similarity=0.051  Sum_probs=92.1

Q ss_pred             eeccCcEEEEeeec----CCeeEEEEcCCCccccccCCCC-----ccCCCcccEEEecCCCCCceEEEEEEecc------
Q 036099           97 FDSCNGLILLGSSL----REHRYYVCNPLTKQCVAIPKAR-----ERVLESAPALAFDPRDSSHYKIIRFVRAR------  161 (279)
Q Consensus        97 ~~s~~Glll~~~~~----~~~~~~v~NP~T~~~~~lP~~~-----~~~~~~~~~lg~d~~~~~~ykvv~~~~~~------  161 (279)
                      +++.++.|.+..+.    ....++++||.|++|..++++.     ..+...  .....   .+...|++.....      
T Consensus        81 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~--~~~~~---~~~iyv~GG~~~~~~~~~~  155 (341)
T PLN02153         81 MVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFH--SMASD---ENHVYVFGGVSKGGLMKTP  155 (341)
T ss_pred             EEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceee--EEEEE---CCEEEEECCccCCCccCCC
Confidence            44456665554421    1246889999999999987652     111111  11111   1222333322211      


Q ss_pred             -ccceEEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec--------------CCeEEEEecCCCeEEEE
Q 036099          162 -MVSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD--------------QGTIVCYNIEAPTEVEI  226 (279)
Q Consensus       162 -~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~--------------~~~i~~fD~~~~~~~~i  226 (279)
                       ....+++|+.++++|..++....+  .........+.++ |++|.++.              ...+.+||+.+++|+.+
T Consensus       156 ~~~~~v~~yd~~~~~W~~l~~~~~~--~~~r~~~~~~~~~-~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~  232 (341)
T PLN02153        156 ERFRTIEAYNIADGKWVQLPDPGEN--FEKRGGAGFAVVQ-GKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEV  232 (341)
T ss_pred             cccceEEEEECCCCeEeeCCCCCCC--CCCCCcceEEEEC-CeEEEEeccccccccCCccceecCceEEEEcCCCcEEec
Confidence             023689999999999987653211  1112223456788 99999852              24689999999999998


Q ss_pred             ecC----CCCCCCCCCeeEEeeCCeEEEEEeCC----------C--eEEEEEeccC
Q 036099          227 VEV----PDENYPYGRGVIELCKGVLNYANRNE----------S--KLLIWLFDDR  266 (279)
Q Consensus       227 ~~~----P~~~~~~~~~~l~~~~G~L~~~~~~~----------~--~~~vW~l~~~  266 (279)
                       ..    |..   ......+..+++|++++...          .  .-+||.++..
T Consensus       233 -~~~g~~P~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~  284 (341)
T PLN02153        233 -ETTGAKPSA---RSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTE  284 (341)
T ss_pred             -cccCCCCCC---cceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcC
Confidence             42    321   12233455689999998742          1  1268888753

>PHA03098 kelch-like protein; Provisional

Probab=98.57  E-value=3.3e-06  Score=77.41  Aligned_cols=128  Identities=12%  Similarity=0.110  Sum_probs=84.3

Q ss_pred             eeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEecc-ccceEEEEeCCCCCccccccCCCCCceeee
Q 036099          113 HRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRAR-MVSEAEIFSSETKTWINCKLNLKPPGHILF  191 (279)
Q Consensus       113 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~-~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~  191 (279)
                      ..++.+||.|++|..+|+++..+...... ..+    +.-.|++..... ....+++|+..+++|+..+..  |..   .
T Consensus       311 ~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~----~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~l--p~~---r  380 (534)
T PHA03098        311 NSVVSYDTKTKSWNKVPELIYPRKNPGVT-VFN----NRIYVIGGIYNSISLNTVESWKPGESKWREEPPL--IFP---R  380 (534)
T ss_pred             ccEEEEeCCCCeeeECCCCCcccccceEE-EEC----CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCc--CcC---C
Confidence            36889999999999999887533322211 111    222233322111 155689999999999987665  321   1


Q ss_pred             eccCeEEEeCCeEEEEec-------CCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeC
Q 036099          192 FVMRSVYSRGGILYSITD-------QGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRN  254 (279)
Q Consensus       192 ~~~~~v~~~~g~ly~l~~-------~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~  254 (279)
                      .....+.++ |.+|.+++       ...+..||+.+++|+.+.++|...   .....+..+|+|++++..
T Consensus       381 ~~~~~~~~~-~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r---~~~~~~~~~~~iyv~GG~  446 (534)
T PHA03098        381 YNPCVVNVN-NLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH---YGGCAIYHDGKIYVIGGI  446 (534)
T ss_pred             ccceEEEEC-CEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc---cCceEEEECCEEEEECCc
Confidence            233557788 99999984       156899999999999984455432   223455678999999864

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=98.57  E-value=6.1e-06  Score=71.41  Aligned_cols=155  Identities=12%  Similarity=0.105  Sum_probs=92.0

Q ss_pred             ccCcEEEEeeecCCeeEEEEcC--CCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEec-c------ccceEEEE
Q 036099           99 SCNGLILLGSSLREHRYYVCNP--LTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRA-R------MVSEAEIF  169 (279)
Q Consensus        99 s~~Glll~~~~~~~~~~~v~NP--~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~-~------~~~~~~vy  169 (279)
                      ..++-|.+........++++|+  .+++|..+|+++...+........+    +.-.|+.-... .      ....++.|
T Consensus        15 ~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~----~~iYv~GG~~~~~~~~~~~~~~~v~~Y   90 (346)
T TIGR03547        15 IIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAID----GKLYVFGGIGKANSEGSPQVFDDVYRY   90 (346)
T ss_pred             EECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEEC----CEEEEEeCCCCCCCCCcceecccEEEE
Confidence            4456665554333466788885  6788999998863212111111112    22233332211 0      13468999


Q ss_pred             eCCCCCccccccCCCCCceeeeeccCeE-EEeCCeEEEEecC--------------------------------------
Q 036099          170 SSETKTWINCKLNLKPPGHILFFVMRSV-YSRGGILYSITDQ--------------------------------------  210 (279)
Q Consensus       170 ~s~~~~W~~~~~~~~p~~~~~~~~~~~v-~~~~g~ly~l~~~--------------------------------------  210 (279)
                      ++.+++|+...... |..   ......+ .++ |++|.++..                                      
T Consensus        91 d~~~~~W~~~~~~~-p~~---~~~~~~~~~~~-g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (346)
T TIGR03547        91 DPKKNSWQKLDTRS-PVG---LLGASGFSLHN-GQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYF  165 (346)
T ss_pred             ECCCCEEecCCCCC-CCc---ccceeEEEEeC-CEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcC
Confidence            99999999886321 211   1112223 578 999999842                                      


Q ss_pred             --CeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCC----CeEEEEEec
Q 036099          211 --GTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNE----SKLLIWLFD  264 (279)
Q Consensus       211 --~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~----~~~~vW~l~  264 (279)
                        ..+..||+.+++|+.+.++|...  .....++..+|+|+++....    ...++|..+
T Consensus       166 ~~~~v~~YDp~t~~W~~~~~~p~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~  223 (346)
T TIGR03547       166 WNKNVLSYDPSTNQWRNLGENPFLG--TAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYL  223 (346)
T ss_pred             ccceEEEEECCCCceeECccCCCCc--CCCceEEEECCEEEEEeeeeCCCccchheEEEE
Confidence              46899999999999984555321  22345667799999998642    234456544

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.55  E-value=3e-06  Score=77.66  Aligned_cols=156  Identities=10%  Similarity=0.056  Sum_probs=104.1

Q ss_pred             CCceEeeccCcEEEEeeecC----CeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEe-cc-ccce
Q 036099           92 FPYKLFDSCNGLILLGSSLR----EHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVR-AR-MVSE  165 (279)
Q Consensus        92 ~~~~~~~s~~Glll~~~~~~----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~-~~-~~~~  165 (279)
                      +...-+++++|.|....+.+    ...+-.++|.|.+|..++++..    ...++|.-... +.-.+++... .. ....
T Consensus       371 R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~----~r~~~gv~~~~-g~iYi~GG~~~~~~~l~s  445 (571)
T KOG4441|consen  371 RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT----RRSGHGVAVLG-GKLYIIGGGDGSSNCLNS  445 (571)
T ss_pred             cccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc----ceeeeEEEEEC-CEEEEEcCcCCCccccce
Confidence            34456677788887766322    3447799999999999998865    22233332222 3323333222 12 2578


Q ss_pred             EEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec------CCeEEEEecCCCeEEEEecCCCCCCCCCCe
Q 036099          166 AEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD------QGTIVCYNIEAPTEVEIVEVPDENYPYGRG  239 (279)
Q Consensus       166 ~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~------~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~  239 (279)
                      ++.|++.+++|+..+.+..+     ......+.+| |.+|.+++      ...+-+||+.+++|+.+.+.+..   ....
T Consensus       446 ve~YDP~t~~W~~~~~M~~~-----R~~~g~a~~~-~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~---rs~~  516 (571)
T KOG4441|consen  446 VECYDPETNTWTLIAPMNTR-----RSGFGVAVLN-GKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP---RSAV  516 (571)
T ss_pred             EEEEcCCCCceeecCCcccc-----cccceEEEEC-CEEEEECCccCCCccceEEEEcCCCCceeEcccCccc---cccc
Confidence            99999999999999877432     1223478888 99999995      33488899999999998333332   3345


Q ss_pred             eEEeeCCeEEEEEeCC-----CeEEEE
Q 036099          240 VIELCKGVLNYANRNE-----SKLLIW  261 (279)
Q Consensus       240 ~l~~~~G~L~~~~~~~-----~~~~vW  261 (279)
                      .++..+|+|++++..+     ..++.|
T Consensus       517 g~~~~~~~ly~vGG~~~~~~l~~ve~y  543 (571)
T KOG4441|consen  517 GVVVLGGKLYAVGGFDGNNNLNTVECY  543 (571)
T ss_pred             cEEEECCEEEEEecccCccccceeEEc
Confidence            5677899999999865     455555

>PLN02193 nitrile-specifier protein

Probab=98.49  E-value=1.7e-05  Score=71.48  Aligned_cols=169  Identities=8%  Similarity=0.022  Sum_probs=97.7

Q ss_pred             eeccCcEEEEeeec----CCeeEEEEcCCCccccccCCCC---ccCCCcccEEEecCCCCCceEEEEEEecc-ccceEEE
Q 036099           97 FDSCNGLILLGSSL----REHRYYVCNPLTKQCVAIPKAR---ERVLESAPALAFDPRDSSHYKIIRFVRAR-MVSEAEI  168 (279)
Q Consensus        97 ~~s~~Glll~~~~~----~~~~~~v~NP~T~~~~~lP~~~---~~~~~~~~~lg~d~~~~~~ykvv~~~~~~-~~~~~~v  168 (279)
                      ++..++.|.+....    ..+.++++||.|++|..++++.   ..+...... ..+    +...|+.-.... ....+++
T Consensus       224 ~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~----~~iYv~GG~~~~~~~~~~~~  298 (470)
T PLN02193        224 MVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADE----ENVYVFGGVSATARLKTLDS  298 (470)
T ss_pred             EEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EEC----CEEEEECCCCCCCCcceEEE
Confidence            34456666554421    2357899999999999987752   211111111 111    222222222111 1456899


Q ss_pred             EeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec-----CCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEe
Q 036099          169 FSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD-----QGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIEL  243 (279)
Q Consensus       169 y~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~-----~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~  243 (279)
                      |+..+++|........  ..........+.++ |++|.++.     ...+.+||+.+++|+.+...+..+........+.
T Consensus       299 yd~~t~~W~~~~~~~~--~~~~R~~~~~~~~~-gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~  375 (470)
T PLN02193        299 YNIVDKKWFHCSTPGD--SFSIRGGAGLEVVQ-GKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA  375 (470)
T ss_pred             EECCCCEEEeCCCCCC--CCCCCCCcEEEEEC-CcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE
Confidence            9999999997754210  01111233456778 99999873     3679999999999999832211111122234456


Q ss_pred             eCCeEEEEEeCC----------CeE--EEEEeccCCCCCccccccc
Q 036099          244 CKGVLNYANRNE----------SKL--LIWLFDDRHHNNSHSGSKA  277 (279)
Q Consensus       244 ~~G~L~~~~~~~----------~~~--~vW~l~~~~~~~~w~w~k~  277 (279)
                      .+++|+++....          ..+  ++|.++-.    ...|+++
T Consensus       376 ~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~----t~~W~~~  417 (470)
T PLN02193        376 VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE----TLQWERL  417 (470)
T ss_pred             ECCEEEEECCccCCccccccCccceeccEEEEEcC----cCEEEEc
Confidence            689999998742          112  48888753    3466665

>PHA02790 Kelch-like protein; Provisional

Probab=98.41  E-value=8.9e-06  Score=73.43  Aligned_cols=138  Identities=12%  Similarity=0.055  Sum_probs=88.4

Q ss_pred             cCcEEEEeeec----CCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCCC
Q 036099          100 CNGLILLGSSL----REHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKT  175 (279)
Q Consensus       100 ~~Glll~~~~~----~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~  175 (279)
                      .++.+.+..+.    ....+..+||.+++|..+|+++..+.... ....+    +.-.+++..  +....++.|+..+++
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~v~~~----~~iYviGG~--~~~~sve~ydp~~n~  342 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-GVPAN----NKLYVVGGL--PNPTSVERWFHGDAA  342 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-EEEEC----CEEEEECCc--CCCCceEEEECCCCe
Confidence            45555554421    12457789999999999999875433221 11111    222333322  123468999999999


Q ss_pred             ccccccCCCCCceeeeeccCeEEEeCCeEEEEec----CCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEE
Q 036099          176 WINCKLNLKPPGHILFFVMRSVYSRGGILYSITD----QGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYA  251 (279)
Q Consensus       176 W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~----~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~  251 (279)
                      |...+..+.|     ......+.++ |++|.+++    ...+-.||+.+++|+.+.++|..   ......+..+|+|+++
T Consensus       343 W~~~~~l~~~-----r~~~~~~~~~-g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~---r~~~~~~~~~~~IYv~  413 (480)
T PHA02790        343 WVNMPSLLKP-----RCNPAVASIN-NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP---HYKSCALVFGRRLFLV  413 (480)
T ss_pred             EEECCCCCCC-----CcccEEEEEC-CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc---cccceEEEECCEEEEE
Confidence            9988765221     1234667888 99999984    24577899999999998334332   2234556789999998


Q ss_pred             Ee
Q 036099          252 NR  253 (279)
Q Consensus       252 ~~  253 (279)
                      +.
T Consensus       414 GG  415 (480)
T PHA02790        414 GR  415 (480)
T ss_pred             CC
Confidence            74

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=98.39  E-value=4.8e-05  Score=66.62  Aligned_cols=169  Identities=14%  Similarity=0.062  Sum_probs=98.0

Q ss_pred             eeccCcEEEEeeecCCeeEEEEcCC--CccccccCCCCccCCCcccEEEecCCCCCceEEEEEEec-c------ccceEE
Q 036099           97 FDSCNGLILLGSSLREHRYYVCNPL--TKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRA-R------MVSEAE  167 (279)
Q Consensus        97 ~~s~~Glll~~~~~~~~~~~v~NP~--T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~-~------~~~~~~  167 (279)
                      .+..++-|.+........++++++.  +++|..+|+++...+........+    +...|++.... .      ....++
T Consensus        34 ~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~----~~IYV~GG~~~~~~~~~~~~~~~v~  109 (376)
T PRK14131         34 GAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFID----GKLYVFGGIGKTNSEGSPQVFDDVY  109 (376)
T ss_pred             EEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEEC----CEEEEEcCCCCCCCCCceeEcccEE
Confidence            3445666666553344567888875  578999987753222111111111    22333332211 0      034689


Q ss_pred             EEeCCCCCccccccCCCCCceeeeeccCeEE-EeCCeEEEEecC------------------------------------
Q 036099          168 IFSSETKTWINCKLNLKPPGHILFFVMRSVY-SRGGILYSITDQ------------------------------------  210 (279)
Q Consensus       168 vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~-~~~g~ly~l~~~------------------------------------  210 (279)
                      +|+..+++|+...... |..   .....++. .+ |++|.++..                                    
T Consensus       110 ~YD~~~n~W~~~~~~~-p~~---~~~~~~~~~~~-~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~  184 (376)
T PRK14131        110 KYDPKTNSWQKLDTRS-PVG---LAGHVAVSLHN-GKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPED  184 (376)
T ss_pred             EEeCCCCEEEeCCCCC-CCc---ccceEEEEeeC-CEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhh
Confidence            9999999999886421 211   11223344 67 999999842                                    


Q ss_pred             ----CeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCC----CeEEEEEeccCCCCCcccccccC
Q 036099          211 ----GTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNE----SKLLIWLFDDRHHNNSHSGSKAA  278 (279)
Q Consensus       211 ----~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~----~~~~vW~l~~~~~~~~w~w~k~~  278 (279)
                          ..+..||+.+++|+.+.++|...  .....++..+++|+++....    ...++|..+-..  +...|++++
T Consensus       185 ~~~~~~v~~YD~~t~~W~~~~~~p~~~--~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~--~~~~W~~~~  256 (376)
T PRK14131        185 YFFNKEVLSYDPSTNQWKNAGESPFLG--TAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTG--NNLKWQKLP  256 (376)
T ss_pred             cCcCceEEEEECCCCeeeECCcCCCCC--CCcceEEEECCEEEEEeeeECCCcCChhheEEEecC--CCcceeecC
Confidence                46999999999999984455321  22345566789999998642    345566654211  223566554

>PLN02193 nitrile-specifier protein

Probab=98.30  E-value=2.5e-05  Score=70.38  Aligned_cols=152  Identities=14%  Similarity=0.096  Sum_probs=88.4

Q ss_pred             eeEEEEcCCCccccccCCCCccCC--CcccEE-EecCCCCCceEEEEEEec-cccceEEEEeCCCCCccccccCCC-CCc
Q 036099          113 HRYYVCNPLTKQCVAIPKARERVL--ESAPAL-AFDPRDSSHYKIIRFVRA-RMVSEAEIFSSETKTWINCKLNLK-PPG  187 (279)
Q Consensus       113 ~~~~v~NP~T~~~~~lP~~~~~~~--~~~~~l-g~d~~~~~~ykvv~~~~~-~~~~~~~vy~s~~~~W~~~~~~~~-p~~  187 (279)
                      ..++++|+.+.+|..+|+......  .....+ .++    +.-.|+.-... .....+++|++.+++|+.+..... |. 
T Consensus       193 ~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~----~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~-  267 (470)
T PLN02193        193 KHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG----STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPT-  267 (470)
T ss_pred             CcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC----CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCC-
Confidence            358899999999998765321111  111111 111    21222221111 114568999999999998755311 11 


Q ss_pred             eeeeeccCeEEEeCCeEEEEec------CCeEEEEecCCCeEEEEecCCCCC-CCCCCeeEEeeCCeEEEEEeCC--CeE
Q 036099          188 HILFFVMRSVYSRGGILYSITD------QGTIVCYNIEAPTEVEIVEVPDEN-YPYGRGVIELCKGVLNYANRNE--SKL  258 (279)
Q Consensus       188 ~~~~~~~~~v~~~~g~ly~l~~------~~~i~~fD~~~~~~~~i~~~P~~~-~~~~~~~l~~~~G~L~~~~~~~--~~~  258 (279)
                        .......+..+ +++|.++.      ...+.+||+.+++|+.+ ..|... .......++..+|+++++....  ..-
T Consensus       268 --~R~~h~~~~~~-~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~-~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~  343 (470)
T PLN02193        268 --PRSFHSMAADE-ENVYVFGGVSATARLKTLDSYNIVDKKWFHC-STPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVD  343 (470)
T ss_pred             --CccceEEEEEC-CEEEEECCCCCCCCcceEEEEECCCCEEEeC-CCCCCCCCCCCCcEEEEECCcEEEEECCCCCccC
Confidence              11223456678 99999983      24578999999999998 654321 1122344556789999887643  223


Q ss_pred             EEEEeccCCCCCccccccc
Q 036099          259 LIWLFDDRHHNNSHSGSKA  277 (279)
Q Consensus       259 ~vW~l~~~~~~~~w~w~k~  277 (279)
                      +||+++...    -.|+++
T Consensus       344 dv~~yD~~t----~~W~~~  358 (470)
T PLN02193        344 DVHYYDPVQ----DKWTQV  358 (470)
T ss_pred             ceEEEECCC----CEEEEe
Confidence            467766433    246655

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=98.24  E-value=0.00011  Score=62.87  Aligned_cols=133  Identities=12%  Similarity=0.052  Sum_probs=79.6

Q ss_pred             eeEEEEcCCCccc----cccCCCCccCCCcccEEEecCCCCCceEEEEEEec-cccceEEEEeCCCCCccccccCCCCCc
Q 036099          113 HRYYVCNPLTKQC----VAIPKARERVLESAPALAFDPRDSSHYKIIRFVRA-RMVSEAEIFSSETKTWINCKLNLKPPG  187 (279)
Q Consensus       113 ~~~~v~NP~T~~~----~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~-~~~~~~~vy~s~~~~W~~~~~~~~p~~  187 (279)
                      ..++.+|+.+++|    ..+|+++......... .++    +.-.|+.-... .....+++|+.++++|...+..  |..
T Consensus        88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~-~~~----~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~--p~~  160 (323)
T TIGR03548        88 SSVYRITLDESKEELICETIGNLPFTFENGSAC-YKD----GTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDF--PGE  160 (323)
T ss_pred             eeEEEEEEcCCceeeeeeEcCCCCcCccCceEE-EEC----CEEEEEeCcCCCccCceEEEEcCCCCCeeECCCC--CCC
Confidence            5688999999987    6778776543322221 111    22222222211 1145789999999999988654  221


Q ss_pred             eeeeeccCeEEEeCCeEEEEecC-----CeEEEEecCCCeEEEEecCCCC--CCC-CCCeeEEeeCCeEEEEEeCC
Q 036099          188 HILFFVMRSVYSRGGILYSITDQ-----GTIVCYNIEAPTEVEIVEVPDE--NYP-YGRGVIELCKGVLNYANRNE  255 (279)
Q Consensus       188 ~~~~~~~~~v~~~~g~ly~l~~~-----~~i~~fD~~~~~~~~i~~~P~~--~~~-~~~~~l~~~~G~L~~~~~~~  255 (279)
                      .  ......+.++ |++|.++..     ..+.+||+.+++|+.+...+..  +.. .....+...+++|++++...
T Consensus       161 ~--r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~  233 (323)
T TIGR03548       161 P--RVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN  233 (323)
T ss_pred             C--CCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence            1  1223446788 999999842     2467999999999998322211  111 11233444578999888643

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=98.16  E-value=0.0003  Score=60.84  Aligned_cols=135  Identities=10%  Similarity=0.020  Sum_probs=81.7

Q ss_pred             eeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccc--cceEEEEe--CCCCCccccccCCCCCce
Q 036099          113 HRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARM--VSEAEIFS--SETKTWINCKLNLKPPGH  188 (279)
Q Consensus       113 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~--~~~~~vy~--s~~~~W~~~~~~~~p~~~  188 (279)
                      ..+.++||.|++|..+++++...........++    +...|+.......  ...+++|+  .++++|......+.|...
T Consensus       168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~  243 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKG----NKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSS  243 (346)
T ss_pred             ceEEEEECCCCceeECccCCCCcCCCceEEEEC----CEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCC
Confidence            568899999999999988764222221122222    3334444332211  22345555  567799988766322100


Q ss_pred             --eeeeccCeEEEeCCeEEEEecC-----------------------CeEEEEecCCCeEEEEecCCCCCCCCCCeeEEe
Q 036099          189 --ILFFVMRSVYSRGGILYSITDQ-----------------------GTIVCYNIEAPTEVEIVEVPDENYPYGRGVIEL  243 (279)
Q Consensus       189 --~~~~~~~~v~~~~g~ly~l~~~-----------------------~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~  243 (279)
                        .......++.++ |.+|.++..                       ..+-+||+.+++|+.+.++|...   .....+.
T Consensus       244 ~~~~~~~~~a~~~~-~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~---~~~~~~~  319 (346)
T TIGR03547       244 SQEGLAGAFAGISN-GVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGL---AYGVSVS  319 (346)
T ss_pred             ccccccEEeeeEEC-CEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCc---eeeEEEE
Confidence              001122356788 999999842                       14678999999999985666532   2234566


Q ss_pred             eCCeEEEEEeCC
Q 036099          244 CKGVLNYANRNE  255 (279)
Q Consensus       244 ~~G~L~~~~~~~  255 (279)
                      .+|+|++++...
T Consensus       320 ~~~~iyv~GG~~  331 (346)
T TIGR03547       320 WNNGVLLIGGEN  331 (346)
T ss_pred             cCCEEEEEeccC
Confidence            799999999753

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=98.11  E-value=0.00033  Score=61.35  Aligned_cols=147  Identities=12%  Similarity=0.021  Sum_probs=86.4

Q ss_pred             eeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccc----cceEEEEeCCCCCccccccCCCCCce
Q 036099          113 HRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARM----VSEAEIFSSETKTWINCKLNLKPPGH  188 (279)
Q Consensus       113 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~----~~~~~vy~s~~~~W~~~~~~~~p~~~  188 (279)
                      ..+.++||.|++|..+++++............+    +.-.|+.......    ......|+.++++|......+.|...
T Consensus       189 ~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~----~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~  264 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKG----NKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGG  264 (376)
T ss_pred             ceEEEEECCCCeeeECCcCCCCCCCcceEEEEC----CEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcC
Confidence            468999999999999987764222222222222    2233343322111    22233457788999988765322110


Q ss_pred             e---eeeccCeEEEeCCeEEEEecCC-----------------------eEEEEecCCCeEEEEecCCCCCCCCCCeeEE
Q 036099          189 I---LFFVMRSVYSRGGILYSITDQG-----------------------TIVCYNIEAPTEVEIVEVPDENYPYGRGVIE  242 (279)
Q Consensus       189 ~---~~~~~~~v~~~~g~ly~l~~~~-----------------------~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~  242 (279)
                      .   ......++.++ |++|.++...                       .+-+||+.+++|+.+..+|...   .....+
T Consensus       265 ~~~~~~~~~~a~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r---~~~~av  340 (376)
T PRK14131        265 SSQEGVAGAFAGYSN-GVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL---AYGVSV  340 (376)
T ss_pred             CcCCccceEeceeEC-CEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc---cceEEE
Confidence            0   01112256788 9999998421                       2447999999999885566532   223456


Q ss_pred             eeCCeEEEEEeCC----CeEEEEEeccCC
Q 036099          243 LCKGVLNYANRNE----SKLLIWLFDDRH  267 (279)
Q Consensus       243 ~~~G~L~~~~~~~----~~~~vW~l~~~~  267 (279)
                      ..+|+|++++...    ..-.|+.++..+
T Consensus       341 ~~~~~iyv~GG~~~~~~~~~~v~~~~~~~  369 (376)
T PRK14131        341 SWNNGVLLIGGETAGGKAVSDVTLLSWDG  369 (376)
T ss_pred             EeCCEEEEEcCCCCCCcEeeeEEEEEEcC
Confidence            6799999999753    233577776444

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=97.97  E-value=0.0001  Score=59.33  Aligned_cols=165  Identities=15%  Similarity=0.086  Sum_probs=98.3

Q ss_pred             eccCcEEEEeeecC-----CeeEEEEcCCCcccccc------CCCCccCCCcccEEEecCCCCCceEEEEEEecc-c--c
Q 036099           98 DSCNGLILLGSSLR-----EHRYYVCNPLTKQCVAI------PKARERVLESAPALAFDPRDSSHYKIIRFVRAR-M--V  163 (279)
Q Consensus        98 ~s~~Glll~~~~~~-----~~~~~v~NP~T~~~~~l------P~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~-~--~  163 (279)
                      ...++-+++....+     .+-++-++|-|.+|...      |...  .--....+|      ....|+..+.++ +  .
T Consensus        85 V~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaR--DGHsAcV~g------n~MyiFGGye~~a~~FS  156 (392)
T KOG4693|consen   85 VEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGAR--DGHSACVWG------NQMYIFGGYEEDAQRFS  156 (392)
T ss_pred             EEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCcc--CCceeeEEC------cEEEEecChHHHHHhhh
Confidence            33455566655322     24478899999999862      2221  111222221      223333333322 1  5


Q ss_pred             ceEEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec---------------CCeEEEEecCCCeEEEEec
Q 036099          164 SEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD---------------QGTIVCYNIEAPTEVEIVE  228 (279)
Q Consensus       164 ~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~---------------~~~i~~fD~~~~~~~~i~~  228 (279)
                      ..+++++..|-+|+.+...-.|.  +...+..++..+ |.+|-.+.               ...|++||+.|+.|..-.+
T Consensus       157 ~d~h~ld~~TmtWr~~~Tkg~Pp--rwRDFH~a~~~~-~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~  233 (392)
T KOG4693|consen  157 QDTHVLDFATMTWREMHTKGDPP--RWRDFHTASVID-GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPE  233 (392)
T ss_pred             ccceeEeccceeeeehhccCCCc--hhhhhhhhhhcc-ceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCC
Confidence            56788899999999997653343  334456778888 99999882               4789999999999987512


Q ss_pred             CCCCCCCCCCeeEEeeCCeEEEEEeCCCeE-----EEEEeccCCCCCccccccc
Q 036099          229 VPDENYPYGRGVIELCKGVLNYANRNESKL-----LIWLFDDRHHNNSHSGSKA  277 (279)
Q Consensus       229 ~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~-----~vW~l~~~~~~~~w~w~k~  277 (279)
                      -|..+........-..+|++++++.....+     ++|.++.    .+-+|++|
T Consensus       234 ~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP----~t~~W~~I  283 (392)
T KOG4693|consen  234 NTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDP----KTSMWSVI  283 (392)
T ss_pred             CCcCCCcccccceEEEcceEEEecccchhhhhhhcceeeccc----ccchheee
Confidence            221111112234456799999999875333     4666653    23467665

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=97.94  E-value=0.00036  Score=59.61  Aligned_cols=158  Identities=10%  Similarity=0.068  Sum_probs=88.4

Q ss_pred             eeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccc--------cceEEEEeCCCCCccccccCCC
Q 036099          113 HRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARM--------VSEAEIFSSETKTWINCKLNLK  184 (279)
Q Consensus       113 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~--------~~~~~vy~s~~~~W~~~~~~~~  184 (279)
                      +.+|+||.-+.+|..+-.+......+.......+.  + +-.+.......        =....+|+..+++|..+...-.
T Consensus        98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s--~-~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~  174 (521)
T KOG1230|consen   98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPS--N-ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG  174 (521)
T ss_pred             eeeeEEeccccceeEeccCCCcCCCccceeEEecc--C-eEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC
Confidence            46889999999999863322222222222222221  2 11111111110        2346789999999998865322


Q ss_pred             CCceeeeeccCeEEEeCCeEEEEe----------cCCeEEEEecCCCeEEEEecCCCC-CCCCCCeeEEee-CCeEEEEE
Q 036099          185 PPGHILFFVMRSVYSRGGILYSIT----------DQGTIVCYNIEAPTEVEIVEVPDE-NYPYGRGVIELC-KGVLNYAN  252 (279)
Q Consensus       185 p~~~~~~~~~~~v~~~~g~ly~l~----------~~~~i~~fD~~~~~~~~i~~~P~~-~~~~~~~~l~~~-~G~L~~~~  252 (279)
                      |..   ...+.-|... ..|.-.+          .-+-+.+||+++=+|+.+ ..+.. +....++++... +|.+++-+
T Consensus       175 PS~---RSGHRMvawK-~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Kl-epsga~PtpRSGcq~~vtpqg~i~vyG  249 (521)
T KOG1230|consen  175 PSP---RSGHRMVAWK-RQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKL-EPSGAGPTPRSGCQFSVTPQGGIVVYG  249 (521)
T ss_pred             CCC---CccceeEEee-eeEEEEcceecCCCceEEeeeeEEEeccceeeeec-cCCCCCCCCCCcceEEecCCCcEEEEc
Confidence            321   1111222222 2222222          235689999999999999 65442 333455666666 78887776


Q ss_pred             eCC------------CeEEEEEeccCC-CCCcccccccC
Q 036099          253 RNE------------SKLLIWLFDDRH-HNNSHSGSKAA  278 (279)
Q Consensus       253 ~~~------------~~~~vW~l~~~~-~~~~w~w~k~~  278 (279)
                      ...            .+-++|.|+... .+..|.|+|+-
T Consensus       250 GYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvk  288 (521)
T KOG1230|consen  250 GYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVK  288 (521)
T ss_pred             chhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeecc
Confidence            531            456699998544 34479999974

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=5.3e-05  Score=62.27  Aligned_cols=42  Identities=21%  Similarity=0.225  Sum_probs=38.4

Q ss_pred             CCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCCCCC
Q 036099            3 QISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPR   44 (279)
Q Consensus         3 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~   44 (279)
                      ...||||++..||+.|+.++|.++..|||+|+++.++.....
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~  139 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQ  139 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccccee
Confidence            468999999999999999999999999999999998877543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=97.63  E-value=0.0012  Score=55.16  Aligned_cols=42  Identities=21%  Similarity=0.397  Sum_probs=38.0

Q ss_pred             CCCCC----HHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCCCCC
Q 036099            3 QISLS----EDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPR   44 (279)
Q Consensus         3 ~~~LP----~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~   44 (279)
                      +..||    +++.+.||+.|...+|..+..|||+|+++++++-..+
T Consensus        75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK  120 (499)
T KOG0281|consen   75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK  120 (499)
T ss_pred             HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence            35789    9999999999999999999999999999999987533

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=97.07  E-value=0.024  Score=46.13  Aligned_cols=132  Identities=14%  Similarity=0.126  Sum_probs=77.9

Q ss_pred             CeeEEEEcCCCccccccCCCC----ccCCCcccEEEecCCCCCceEEEEEEecc--------c--cceEEEEeCCCCCcc
Q 036099          112 EHRYYVCNPLTKQCVAIPKAR----ERVLESAPALAFDPRDSSHYKIIRFVRAR--------M--VSEAEIFSSETKTWI  177 (279)
Q Consensus       112 ~~~~~v~NP~T~~~~~lP~~~----~~~~~~~~~lg~d~~~~~~ykvv~~~~~~--------~--~~~~~vy~s~~~~W~  177 (279)
                      +....+.|-.|.+|+.+-...    .+..-....+  |    +...|+....+.        +  .-.+.+++.+|+.|.
T Consensus       156 S~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~--~----~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~  229 (392)
T KOG4693|consen  156 SQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVI--D----GMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWT  229 (392)
T ss_pred             hccceeEeccceeeeehhccCCCchhhhhhhhhhc--c----ceEEEeccccccCCCccchhhhhcceeEEEeccccccc
Confidence            456789999999999874322    2111111111  1    111222221111        1  556888999999997


Q ss_pred             ccccCC-CCCceeeeeccCeEEEeCCeEEEEec--------CCeEEEEecCCCeEEEEecCCCC-CCCCCCeeEEeeCCe
Q 036099          178 NCKLNL-KPPGHILFFVMRSVYSRGGILYSITD--------QGTIVCYNIEAPTEVEIVEVPDE-NYPYGRGVIELCKGV  247 (279)
Q Consensus       178 ~~~~~~-~p~~~~~~~~~~~v~~~~g~ly~l~~--------~~~i~~fD~~~~~~~~i~~~P~~-~~~~~~~~l~~~~G~  247 (279)
                      ..+... .|...   ...+....| |++|..+.        =..+..||+.+..|..| ..-.. +.....-+-+.++|+
T Consensus       230 r~p~~~~~P~GR---RSHS~fvYn-g~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I-~~~Gk~P~aRRRqC~~v~g~k  304 (392)
T KOG4693|consen  230 RTPENTMKPGGR---RSHSTFVYN-GKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVI-SVRGKYPSARRRQCSVVSGGK  304 (392)
T ss_pred             cCCCCCcCCCcc---cccceEEEc-ceEEEecccchhhhhhhcceeecccccchheee-eccCCCCCcccceeEEEECCE
Confidence            664331 13222   123455677 99999982        36789999999999999 54322 111222334456899


Q ss_pred             EEEEEeC
Q 036099          248 LNYANRN  254 (279)
Q Consensus       248 L~~~~~~  254 (279)
                      +++++..
T Consensus       305 v~LFGGT  311 (392)
T KOG4693|consen  305 VYLFGGT  311 (392)
T ss_pred             EEEecCC
Confidence            9998864

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=96.97  E-value=0.00031  Score=57.98  Aligned_cols=43  Identities=12%  Similarity=0.284  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHhcCC-----hhhhHHHhhhhHHHHhhhcCCCCCCc
Q 036099            3 QISLSEDLITEILCRLP-----VKSVTRFKIVSKAWNNLISNVCIPRI   45 (279)
Q Consensus         3 ~~~LP~Dll~eIL~rLP-----~~~l~r~r~VcK~W~~li~~~~F~~~   45 (279)
                      +..||||+|.+||.++=     ..+|.++++|||.|....++|.|.+.
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~  154 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL  154 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence            46799999999998764     59999999999999999999998774

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=96.59  E-value=0.056  Score=48.99  Aligned_cols=152  Identities=12%  Similarity=0.046  Sum_probs=89.8

Q ss_pred             eEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEecc----ccceEEEEeCCCCCccccccCCCCCcee
Q 036099          114 RYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRAR----MVSEAEIFSSETKTWINCKLNLKPPGHI  189 (279)
Q Consensus       114 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~----~~~~~~vy~s~~~~W~~~~~~~~p~~~~  189 (279)
                      .++++|-.+..|.......... ....+......  ++ +++.+.-..    ....++.|+..|++|+.....-.|  ..
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p-~~r~g~~~~~~--~~-~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~--P~  162 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEP-SPRYGHSLSAV--GD-KLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDP--PP  162 (482)
T ss_pred             eeEEeecCCcccccccccCCCC-CcccceeEEEE--CC-eEEEEccccCCCCChhheEeccCCCCcEEEecCcCCC--CC
Confidence            4999999998888754432211 11111110110  11 222222111    145789999999999987654221  11


Q ss_pred             eeeccCeEEEeCCeEEEEe-------cCCeEEEEecCCCeEEEEecCCCCCC-CCCCeeEEeeCCeEEEEEeCC----Ce
Q 036099          190 LFFVMRSVYSRGGILYSIT-------DQGTIVCYNIEAPTEVEIVEVPDENY-PYGRGVIELCKGVLNYANRNE----SK  257 (279)
Q Consensus       190 ~~~~~~~v~~~~g~ly~l~-------~~~~i~~fD~~~~~~~~i~~~P~~~~-~~~~~~l~~~~G~L~~~~~~~----~~  257 (279)
                      ....+..+.++ .++|..+       ..+.+.+||+++.+|..+ ....... ......++..+++++++....    .-
T Consensus       163 ~r~~Hs~~~~g-~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~-~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l  240 (482)
T KOG0379|consen  163 PRAGHSATVVG-TKLVVFGGIGGTGDSLNDLHIYDLETSTWSEL-DTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYL  240 (482)
T ss_pred             CcccceEEEEC-CEEEEECCccCcccceeeeeeeccccccceec-ccCCCCCCCCCCceEEEECCeEEEEeccccCCcee
Confidence            22344556666 8888888       256899999999999998 7655422 233455666688888887643    22


Q ss_pred             EEEEEeccCCCCCccccccc
Q 036099          258 LLIWLFDDRHHNNSHSGSKA  277 (279)
Q Consensus       258 ~~vW~l~~~~~~~~w~w~k~  277 (279)
                      =++|.|+-..    |.|.+.
T Consensus       241 ~D~~~ldl~~----~~W~~~  256 (482)
T KOG0379|consen  241 NDVHILDLST----WEWKLL  256 (482)
T ss_pred             cceEeeeccc----ceeeec
Confidence            2378887544    777654

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=96.28  E-value=0.35  Score=43.89  Aligned_cols=143  Identities=8%  Similarity=-0.010  Sum_probs=81.1

Q ss_pred             eeEEEEcCCCccccccCCCCcc---CCCcccEEEecCCCCCceEEEEEEecc---ccceEEEEeCCCCCccccccCCCCC
Q 036099          113 HRYYVCNPLTKQCVAIPKARER---VLESAPALAFDPRDSSHYKIIRFVRAR---MVSEAEIFSSETKTWINCKLNLKPP  186 (279)
Q Consensus       113 ~~~~v~NP~T~~~~~lP~~~~~---~~~~~~~lg~d~~~~~~ykvv~~~~~~---~~~~~~vy~s~~~~W~~~~~~~~p~  186 (279)
                      ..+..+|+.|++|..+.+....   .....+.. +     +++.+|.-....   ....++||+.++.+|......-.  
T Consensus       139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~-~-----g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~--  210 (482)
T KOG0379|consen  139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSATV-V-----GTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGE--  210 (482)
T ss_pred             hheEeccCCCCcEEEecCcCCCCCCcccceEEE-E-----CCEEEEECCccCcccceeeeeeeccccccceecccCCC--
Confidence            4789999999999987544321   11111111 1     223333322221   26679999999999998865421  


Q ss_pred             ceeeeeccCeEEEeCCeEEEEec-------CCeEEEEecCCCeEEEEecCCCC--CCCCCCeeEEeeCCeEEEEEeCCC-
Q 036099          187 GHILFFVMRSVYSRGGILYSITD-------QGTIVCYNIEAPTEVEIVEVPDE--NYPYGRGVIELCKGVLNYANRNES-  256 (279)
Q Consensus       187 ~~~~~~~~~~v~~~~g~ly~l~~-------~~~i~~fD~~~~~~~~i~~~P~~--~~~~~~~~l~~~~G~L~~~~~~~~-  256 (279)
                      ..........+.++ ++++.+.+       -.-+..||+.+.+|..+  .+..  ........++..+..+++++.... 
T Consensus       211 ~P~pR~gH~~~~~~-~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~--~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~  287 (482)
T KOG0379|consen  211 APSPRYGHAMVVVG-NKLLVFGGGDDGDVYLNDVHILDLSTWEWKLL--PTGGDLPSPRSGHSLTVSGDHLLLFGGGTDP  287 (482)
T ss_pred             CCCCCCCceEEEEC-CeEEEEeccccCCceecceEeeecccceeeec--cccCCCCCCcceeeeEEECCEEEEEcCCccc
Confidence            11123344556666 67666663       24689999999888854  3222  112222344455666777775542 


Q ss_pred             ----eEEEEEeccC
Q 036099          257 ----KLLIWLFDDR  266 (279)
Q Consensus       257 ----~~~vW~l~~~  266 (279)
                          --++|.|+..
T Consensus       288 ~~~~l~~~~~l~~~  301 (482)
T KOG0379|consen  288 KQEPLGDLYGLDLE  301 (482)
T ss_pred             cccccccccccccc
Confidence                2336766643

>PF13964 Kelch_6: Kelch motif

Probab=95.89  E-value=0.019  Score=34.28  Aligned_cols=36  Identities=19%  Similarity=0.298  Sum_probs=30.1

Q ss_pred             cCeEEEeCCeEEEEec-------CCeEEEEecCCCeEEEEecCC
Q 036099          194 MRSVYSRGGILYSITD-------QGTIVCYNIEAPTEVEIVEVP  230 (279)
Q Consensus       194 ~~~v~~~~g~ly~l~~-------~~~i~~fD~~~~~~~~i~~~P  230 (279)
                      ...+.++ |.+|.++.       ...+..||+++++|+.++++|
T Consensus         5 ~s~v~~~-~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp   47 (50)
T PF13964_consen    5 HSAVVVG-GKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP   47 (50)
T ss_pred             CEEEEEC-CEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence            4668889 99999993       367999999999999995555

>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa

Probab=95.67  E-value=0.069  Score=39.19  Aligned_cols=66  Identities=12%  Similarity=0.144  Sum_probs=47.2

Q ss_pred             cCCeEEEEecCCC--eEEEEecCCCCCCC-----------CCCeeEEeeCCeEEEEEeCC----------CeEEEEEecc
Q 036099          209 DQGTIVCYNIEAP--TEVEIVEVPDENYP-----------YGRGVIELCKGVLNYANRNE----------SKLLIWLFDD  265 (279)
Q Consensus       209 ~~~~i~~fD~~~~--~~~~i~~~P~~~~~-----------~~~~~l~~~~G~L~~~~~~~----------~~~~vW~l~~  265 (279)
                      ....|+.+|+..+  .++.| ++|.....           .....++..+|+|.++....          .++.+|.|..
T Consensus         4 l~~GIL~CD~~~~~p~l~~v-pLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~   82 (131)
T PF07762_consen    4 LWRGILFCDVFDDSPVLRFV-PLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKD   82 (131)
T ss_pred             CCCCEEEEECCCCCccEEEE-eCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEecc
Confidence            3456888898765  68889 99986211           12267788999999999753          4699999998


Q ss_pred             CCCCCcccccc
Q 036099          266 RHHNNSHSGSK  276 (279)
Q Consensus       266 ~~~~~~w~w~k  276 (279)
                      . ..+.+.|+|
T Consensus        83 ~-~~~~~~W~~   92 (131)
T PF07762_consen   83 P-EGSSWEWKK   92 (131)
T ss_pred             C-CCCCCCEEE
Confidence            6 234567765

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=95.55  E-value=0.11  Score=44.93  Aligned_cols=105  Identities=12%  Similarity=0.084  Sum_probs=69.0

Q ss_pred             eEEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec------------CCeEEEEecCCCeEEEEecCCCC
Q 036099          165 EAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD------------QGTIVCYNIEAPTEVEIVEVPDE  232 (279)
Q Consensus       165 ~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~------------~~~i~~fD~~~~~~~~i~~~P~~  232 (279)
                      ...+|+.++++|+.....-.|   .......+|.+--|.||..+.            -.-+-.||+.+.+|..+ .++..
T Consensus        99 dLy~Yn~k~~eWkk~~spn~P---~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql-~~~g~  174 (521)
T KOG1230|consen   99 DLYSYNTKKNEWKKVVSPNAP---PPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQL-EFGGG  174 (521)
T ss_pred             eeeEEeccccceeEeccCCCc---CCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheee-ccCCC
Confidence            478899999999988653212   222333444444266666662            23577899999999999 99987


Q ss_pred             CCCCCCeeEEeeCCeEEEEEeCC----C---eEEEEEeccCCCCCccccccc
Q 036099          233 NYPYGRGVIELCKGVLNYANRNE----S---KLLIWLFDDRHHNNSHSGSKA  277 (279)
Q Consensus       233 ~~~~~~~~l~~~~G~L~~~~~~~----~---~~~vW~l~~~~~~~~w~w~k~  277 (279)
                      +....+..|+....+|.+++.-.    .   -=+||+++-    +...|+|+
T Consensus       175 PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdL----dtykW~Kl  222 (521)
T KOG1230|consen  175 PSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDL----DTYKWSKL  222 (521)
T ss_pred             CCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEec----cceeeeec
Confidence            66666778888899998888532    1   112555553    23567765

>PF13964 Kelch_6: Kelch motif

Probab=95.51  E-value=0.029  Score=33.45  Aligned_cols=36  Identities=14%  Similarity=0.101  Sum_probs=25.6

Q ss_pred             eccCcEEEEeeec-----CCeeEEEEcCCCccccccCCCCc
Q 036099           98 DSCNGLILLGSSL-----REHRYYVCNPLTKQCVAIPKARE  133 (279)
Q Consensus        98 ~s~~Glll~~~~~-----~~~~~~v~NP~T~~~~~lP~~~~  133 (279)
                      .+.+|-|.+..+.     ....+.++||.|++|..+|+++.
T Consensus         8 v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~   48 (50)
T PF13964_consen    8 VVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT   48 (50)
T ss_pred             EEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence            3445555544421     24678999999999999999875

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=95.41  E-value=1.6  Score=40.13  Aligned_cols=41  Identities=22%  Similarity=0.315  Sum_probs=37.3

Q ss_pred             CCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCCCC
Q 036099            3 QISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIP   43 (279)
Q Consensus         3 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~   43 (279)
                      +..||.++...||..|+.+++++++.||+.|+.++.+....
T Consensus       108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~  148 (537)
T KOG0274|consen  108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVW  148 (537)
T ss_pred             hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchh
Confidence            56899999999999999999999999999999999876643

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=94.84  E-value=0.074  Score=31.04  Aligned_cols=36  Identities=22%  Similarity=0.314  Sum_probs=29.5

Q ss_pred             cCeEEEeCCeEEEEec-------CCeEEEEecCCCeEEEEecCC
Q 036099          194 MRSVYSRGGILYSITD-------QGTIVCYNIEAPTEVEIVEVP  230 (279)
Q Consensus       194 ~~~v~~~~g~ly~l~~-------~~~i~~fD~~~~~~~~i~~~P  230 (279)
                      ..++.++ |.+|.+++       ...+..||+.+++|+.++++|
T Consensus         5 ~~~~~~~-~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    5 HAAVVVG-NKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             EEEEEET-TEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CEEEEEC-CEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            3567888 99999993       467999999999999985554

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=93.80  E-value=0.19  Score=29.75  Aligned_cols=32  Identities=16%  Similarity=0.281  Sum_probs=27.2

Q ss_pred             cCeEEEeCCeEEEEec---------CCeEEEEecCCCeEEEE
Q 036099          194 MRSVYSRGGILYSITD---------QGTIVCYNIEAPTEVEI  226 (279)
Q Consensus       194 ~~~v~~~~g~ly~l~~---------~~~i~~fD~~~~~~~~i  226 (279)
                      ..++.++ +++|..+.         ...+-.||+++++|+.+
T Consensus         5 hs~~~~~-~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~   45 (49)
T PF07646_consen    5 HSAVVLD-GKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTEL   45 (49)
T ss_pred             eEEEEEC-CEEEEECCcccCCCCcccceeEEEECCCCEEeec
Confidence            4567888 99999983         46789999999999998

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.46  E-value=3.9  Score=33.96  Aligned_cols=149  Identities=16%  Similarity=0.217  Sum_probs=86.8

Q ss_pred             ceEeeccCcEEEEeeecCCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCC
Q 036099           94 YKLFDSCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSET  173 (279)
Q Consensus        94 ~~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~  173 (279)
                      .-+++.-+|-|-+.. -..+.+..+||.++.-..+|.+..... ..-.++.|+..  .   +++.. ...-.+..|+..+
T Consensus       192 yGi~atpdGsvwyas-lagnaiaridp~~~~aev~p~P~~~~~-gsRriwsdpig--~---~witt-wg~g~l~rfdPs~  263 (353)
T COG4257         192 YGICATPDGSVWYAS-LAGNAIARIDPFAGHAEVVPQPNALKA-GSRRIWSDPIG--R---AWITT-WGTGSLHRFDPSV  263 (353)
T ss_pred             cceEECCCCcEEEEe-ccccceEEcccccCCcceecCCCcccc-cccccccCccC--c---EEEec-cCCceeeEeCccc
Confidence            344555566666654 234567789999998888887764222 11233445542  1   22221 1255788899998


Q ss_pred             CCccccccCCCCCceeeeeccCeEEEeCCeEEEEe--cCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEE
Q 036099          174 KTWINCKLNLKPPGHILFFVMRSVYSRGGILYSIT--DQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYA  251 (279)
Q Consensus       174 ~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~--~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~  251 (279)
                      .+|++-+-   |...   ..-..+++++----|+.  ..+.|+.||.++++|+++ +.|....  ....|.--.|.+.+.
T Consensus       264 ~sW~eypL---Pgs~---arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~-p~pr~n~--gn~ql~gr~ge~W~~  334 (353)
T COG4257         264 TSWIEYPL---PGSK---ARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVL-PIPRPNS--GNIQLDGRPGELWFT  334 (353)
T ss_pred             ccceeeeC---CCCC---CCcceeeeccCCcEEeeccccCceeecCcccceEEEe-cCCCCCC--CceeccCCCCceeec
Confidence            88876643   2211   01133555543445554  689999999999999999 9987532  233333334555555


Q ss_pred             EeCCCeEE
Q 036099          252 NRNESKLL  259 (279)
Q Consensus       252 ~~~~~~~~  259 (279)
                      +..-..+.
T Consensus       335 e~gvd~lv  342 (353)
T COG4257         335 EAGVDALV  342 (353)
T ss_pred             ccCcceeE
Confidence            44333333

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=92.63  E-value=2  Score=35.33  Aligned_cols=81  Identities=19%  Similarity=0.200  Sum_probs=58.0

Q ss_pred             eccCeEEEeCCeEEEEe-cCCeEEEEecCCCeEE-EEecCCCCCCC---------CCCeeEEeeCCeEEEEEeCC---Ce
Q 036099          192 FVMRSVYSRGGILYSIT-DQGTIVCYNIEAPTEV-EIVEVPDENYP---------YGRGVIELCKGVLNYANRNE---SK  257 (279)
Q Consensus       192 ~~~~~v~~~~g~ly~l~-~~~~i~~fD~~~~~~~-~i~~~P~~~~~---------~~~~~l~~~~G~L~~~~~~~---~~  257 (279)
                      ....-|..| |.||+-. ....|+.||+.+++.. .. .+|.....         .....++..+..|.++....   .+
T Consensus        70 ~GtG~vVYn-gslYY~~~~s~~IvkydL~t~~v~~~~-~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~  147 (250)
T PF02191_consen   70 QGTGHVVYN-GSLYYNKYNSRNIVKYDLTTRSVVARR-ELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGN  147 (250)
T ss_pred             ccCCeEEEC-CcEEEEecCCceEEEEECcCCcEEEEE-ECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCc
Confidence            345567788 9999977 6899999999999988 77 88875322         12366777788888887653   46


Q ss_pred             EEEEEeccCCCCCcccc
Q 036099          258 LLIWLFDDRHHNNSHSG  274 (279)
Q Consensus       258 ~~vW~l~~~~~~~~w~w  274 (279)
                      |.|=.|+...-...-+|
T Consensus       148 ivvskld~~tL~v~~tw  164 (250)
T PF02191_consen  148 IVVSKLDPETLSVEQTW  164 (250)
T ss_pred             EEEEeeCcccCceEEEE
Confidence            88888876543333344

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=92.31  E-value=6.9  Score=33.87  Aligned_cols=148  Identities=12%  Similarity=0.055  Sum_probs=80.8

Q ss_pred             eEeeccCcEEEEeeecCCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccc-----c---ceE
Q 036099           95 KLFDSCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARM-----V---SEA  166 (279)
Q Consensus        95 ~~~~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~-----~---~~~  166 (279)
                      ...+-.+.-|+...  .....+|+|+.|+....+|.+....... +.+..   . ++  +..+.....     .   ..+
T Consensus        70 ~F~al~gskIv~~d--~~~~t~vyDt~t~av~~~P~l~~pk~~p-isv~V---G-~~--LY~m~~~~~~~~~~~~~~~~F  140 (342)
T PF07893_consen   70 DFFALHGSKIVAVD--QSGRTLVYDTDTRAVATGPRLHSPKRCP-ISVSV---G-DK--LYAMDRSPFPEPAGRPDFPCF  140 (342)
T ss_pred             EEEEecCCeEEEEc--CCCCeEEEECCCCeEeccCCCCCCCcce-EEEEe---C-Ce--EEEeeccCccccccCccceeE
Confidence            33333455555554  2356889999999999999876543322 22221   1 22  333332210     0   145


Q ss_pred             EEE--e--------CCCCCccccccCCCCCceeee-----eccCeEEEeCCeEEEEe-cCC--eEEEEecCCCeEEEEe-
Q 036099          167 EIF--S--------SETKTWINCKLNLKPPGHILF-----FVMRSVYSRGGILYSIT-DQG--TIVCYNIEAPTEVEIV-  227 (279)
Q Consensus       167 ~vy--~--------s~~~~W~~~~~~~~p~~~~~~-----~~~~~v~~~~g~ly~l~-~~~--~i~~fD~~~~~~~~i~-  227 (279)
                      |++  +        .++++|+..+..  |......     -..-+|. + |.--|+. ...  ...+||+++.+|+... 
T Consensus       141 E~l~~~~~~~~~~~~~~w~W~~LP~P--Pf~~~~~~~~~~i~sYavv-~-g~~I~vS~~~~~~GTysfDt~~~~W~~~Gd  216 (342)
T PF07893_consen  141 EALVYRPPPDDPSPEESWSWRSLPPP--PFVRDRRYSDYRITSYAVV-D-GRTIFVSVNGRRWGTYSFDTESHEWRKHGD  216 (342)
T ss_pred             EEeccccccccccCCCcceEEcCCCC--CccccCCcccceEEEEEEe-c-CCeEEEEecCCceEEEEEEcCCcceeeccc
Confidence            555  2        334567776553  3222111     2223445 7 6555664 434  7999999999999875 


Q ss_pred             -cCCCCCCC----CCCeeEEee--C--CeEEEEEeCC
Q 036099          228 -EVPDENYP----YGRGVIELC--K--GVLNYANRNE  255 (279)
Q Consensus       228 -~~P~~~~~----~~~~~l~~~--~--G~L~~~~~~~  255 (279)
                       .||.....    +-+..++-+  +  |.||.+....
T Consensus       217 W~LPF~G~a~y~~el~~W~Gls~~~~~~~lca~dv~~  253 (342)
T PF07893_consen  217 WMLPFHGQAEYVPELDLWFGLSSDGGGGHLCACDVSS  253 (342)
T ss_pred             eecCcCCccEECCCcCeEEEeccCCCCcEEEEEeccc
Confidence             47875322    334555543  2  3777766543

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=91.62  E-value=0.54  Score=27.58  Aligned_cols=36  Identities=17%  Similarity=0.274  Sum_probs=20.8

Q ss_pred             CeEEEeCCeEEEEec-------CCeEEEEecCCCeEEEEecCC
Q 036099          195 RSVYSRGGILYSITD-------QGTIVCYNIEAPTEVEIVEVP  230 (279)
Q Consensus       195 ~~v~~~~g~ly~l~~-------~~~i~~fD~~~~~~~~i~~~P  230 (279)
                      .++.++++.+|..+.       -..+..||+.+++|+.++++|
T Consensus         6 ~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    6 SAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred             EEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence            345553277777772       347889999999999984455

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=90.58  E-value=2.5  Score=38.00  Aligned_cols=90  Identities=17%  Similarity=0.155  Sum_probs=44.4

Q ss_pred             eeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEE--eccccceEEEEeCCCCC--ccccccCCCCCce
Q 036099          113 HRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFV--RARMVSEAEIFSSETKT--WINCKLNLKPPGH  188 (279)
Q Consensus       113 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~--~~~~~~~~~vy~s~~~~--W~~~~~~~~p~~~  188 (279)
                      .++.|||.+|++|.. |....+....-.++||-...   -+++.+.  .+...+.-+.|.+....  |+..-... |...
T Consensus        57 DELHvYNTatnqWf~-PavrGDiPpgcAA~GfvcdG---trilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~-p~nG  131 (830)
T KOG4152|consen   57 DELHVYNTATNQWFA-PAVRGDIPPGCAAFGFVCDG---TRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKT-PKNG  131 (830)
T ss_pred             hhhhhhccccceeec-chhcCCCCCchhhcceEecC---ceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCC-CCCC
Confidence            467899999999984 33322222222344554432   1333322  12226666778877754  54443221 1111


Q ss_pred             eee---eccCeEEEeCCeEEEEe
Q 036099          189 ILF---FVMRSVYSRGGILYSIT  208 (279)
Q Consensus       189 ~~~---~~~~~v~~~~g~ly~l~  208 (279)
                      ..+   -.++=..++ ++.|..+
T Consensus       132 ~pPCPRlGHSFsl~g-nKcYlFG  153 (830)
T KOG4152|consen  132 PPPCPRLGHSFSLVG-NKCYLFG  153 (830)
T ss_pred             CCCCCccCceeEEec-cEeEEec
Confidence            111   122224455 7888877

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=90.44  E-value=0.25  Score=43.08  Aligned_cols=38  Identities=26%  Similarity=0.397  Sum_probs=35.3

Q ss_pred             CCCCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCC
Q 036099            4 ISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVC   41 (279)
Q Consensus         4 ~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~   41 (279)
                      -.||.+++..||+.|..+++.|++.+|+.|+.+..|..
T Consensus        73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~  110 (483)
T KOG4341|consen   73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGS  110 (483)
T ss_pred             ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccc
Confidence            47999999999999999999999999999999887755

>smart00284 OLF Olfactomedin-like domains

Probab=89.80  E-value=5.6  Score=32.73  Aligned_cols=75  Identities=15%  Similarity=0.107  Sum_probs=51.9

Q ss_pred             eccCeEEEeCCeEEEEe-cCCeEEEEecCCCeEEEEecCCCCCC---------CCCCeeEEeeCCeEEEEEeCC---CeE
Q 036099          192 FVMRSVYSRGGILYSIT-DQGTIVCYNIEAPTEVEIVEVPDENY---------PYGRGVIELCKGVLNYANRNE---SKL  258 (279)
Q Consensus       192 ~~~~~v~~~~g~ly~l~-~~~~i~~fD~~~~~~~~i~~~P~~~~---------~~~~~~l~~~~G~L~~~~~~~---~~~  258 (279)
                      ....-|..| |.||+-. .+..|+.||+.+++......+|....         ......++..+..|.++...+   .+|
T Consensus        75 ~GtG~VVYn-gslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~i  153 (255)
T smart00284       75 QGTGVVVYN-GSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKI  153 (255)
T ss_pred             ccccEEEEC-ceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCE
Confidence            355678889 9999966 57899999999999875425775311         122366777777787776542   567


Q ss_pred             EEEEeccCC
Q 036099          259 LIWLFDDRH  267 (279)
Q Consensus       259 ~vW~l~~~~  267 (279)
                      .|=.|+...
T Consensus       154 vvSkLnp~t  162 (255)
T smart00284      154 VISKLNPAT  162 (255)
T ss_pred             EEEeeCccc
Confidence            777776544

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=89.42  E-value=0.51  Score=27.32  Aligned_cols=36  Identities=14%  Similarity=0.074  Sum_probs=25.5

Q ss_pred             eeccCcEEEEeee-----cCCeeEEEEcCCCccccccCCCC
Q 036099           97 FDSCNGLILLGSS-----LREHRYYVCNPLTKQCVAIPKAR  132 (279)
Q Consensus        97 ~~s~~Glll~~~~-----~~~~~~~v~NP~T~~~~~lP~~~  132 (279)
                      +.+.+|.|.+..+     .....+.++||.|++|..+|+++
T Consensus         7 ~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    7 AVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             EEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             EEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            4455666655542     22456899999999999999874

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED

Probab=88.45  E-value=5.6  Score=34.96  Aligned_cols=54  Identities=19%  Similarity=0.228  Sum_probs=33.8

Q ss_pred             CeEEEEe----cCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCC------CeEEEEEe
Q 036099          202 GILYSIT----DQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNE------SKLLIWLF  263 (279)
Q Consensus       202 g~ly~l~----~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~------~~~~vW~l  263 (279)
                      ..||...    +...++.||+-..+...    |-   .+.+..+. .+|+|+++...+      .-|+||.-
T Consensus       320 DvLYvF~~~~~g~~~Ll~YN~I~k~v~t----Pi---~chG~alf-~DG~l~~fra~~~EptrvHp~QiWqT  383 (448)
T PF12458_consen  320 DVLYVFYAREEGRYLLLPYNLIRKEVAT----PI---ICHGYALF-EDGRLVYFRAEGDEPTRVHPMQIWQT  383 (448)
T ss_pred             eEEEEEEECCCCcEEEEechhhhhhhcC----Ce---eccceeEe-cCCEEEEEecCCCCcceeccceeecC
Confidence            4556554    35667788876655433    22   12333343 489999999762      77889984

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=87.48  E-value=9.8  Score=32.95  Aligned_cols=80  Identities=15%  Similarity=0.204  Sum_probs=46.8

Q ss_pred             eEEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEe--c-C--CeEEEEecCCC-----------eEEEEec
Q 036099          165 EAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSIT--D-Q--GTIVCYNIEAP-----------TEVEIVE  228 (279)
Q Consensus       165 ~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~--~-~--~~i~~fD~~~~-----------~~~~i~~  228 (279)
                      ....|+.++..|+....=..|      ..-.+.++. .-=-|++  . .  +.|-+.|+.+.           .|..+ .
T Consensus       200 GTysfDt~~~~W~~~GdW~LP------F~G~a~y~~-el~~W~Gls~~~~~~~lca~dv~~~~~~~~pp~~~~~~~~l-~  271 (342)
T PF07893_consen  200 GTYSFDTESHEWRKHGDWMLP------FHGQAEYVP-ELDLWFGLSSDGGGGHLCACDVSSADSASPPPEWKLTWEEL-F  271 (342)
T ss_pred             EEEEEEcCCcceeeccceecC------cCCccEECC-CcCeEEEeccCCCCcEEEEEeccccccCCCCCcceeccccc-c
Confidence            578888888999887442123      333455555 4445555  2 2  48999998773           23344 4


Q ss_pred             CCCCCCCCCCeeEEee-CCeEEEEEe
Q 036099          229 VPDENYPYGRGVIELC-KGVLNYANR  253 (279)
Q Consensus       229 ~P~~~~~~~~~~l~~~-~G~L~~~~~  253 (279)
                      .|.. .......|+.+ +|+.|++..
T Consensus       272 ~~~~-~~~~~~~Lv~lG~grFCi~~~  296 (342)
T PF07893_consen  272 PPEE-WRHVGATLVYLGSGRFCIVEF  296 (342)
T ss_pred             cccc-ccccCceEEECCCCCEEEEEE
Confidence            4432 22223445444 689999984

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=87.37  E-value=0.89  Score=26.64  Aligned_cols=21  Identities=10%  Similarity=0.191  Sum_probs=14.1

Q ss_pred             CeeEEEEcCCCccccccCCCC
Q 036099          112 EHRYYVCNPLTKQCVAIPKAR  132 (279)
Q Consensus       112 ~~~~~v~NP~T~~~~~lP~~~  132 (279)
                      ...++++|+.|++|..+|++|
T Consensus        28 ~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen   28 LNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             ---EEEEETTTTEEEE--SS-
T ss_pred             cCCEEEEECCCCEEEECCCCC
Confidence            356899999999999998775

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.05  E-value=2.9  Score=35.83  Aligned_cols=96  Identities=14%  Similarity=0.155  Sum_probs=64.7

Q ss_pred             cceEEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEe----------------------------------
Q 036099          163 VSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSIT----------------------------------  208 (279)
Q Consensus       163 ~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~----------------------------------  208 (279)
                      ...+..|++.+++|..++... |..   .....++..++..+|+.+                                  
T Consensus       112 ~nd~Y~y~p~~nsW~kl~t~s-P~g---l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~  187 (381)
T COG3055         112 FNDAYRYDPSTNSWHKLDTRS-PTG---LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDK  187 (381)
T ss_pred             eeeeEEecCCCChhheecccc-ccc---cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCC
Confidence            336889999999999887643 432   234455666623888887                                  


Q ss_pred             ------cCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCC----CeEEEEEec
Q 036099          209 ------DQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNE----SKLLIWLFD  264 (279)
Q Consensus       209 ------~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~----~~~~vW~l~  264 (279)
                            ....+++||+.+++|+.....|.-..  .+..+...+++|.++..+-    .+-.+|+.+
T Consensus       188 ~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~--aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~  251 (381)
T COG3055         188 KAEDYFFNKEVLSYDPSTNQWRNLGENPFYGN--AGSAVVIKGNKLTLINGEIKPGLRTAEVKQAD  251 (381)
T ss_pred             CHHHhcccccccccccccchhhhcCcCcccCc--cCcceeecCCeEEEEcceecCCccccceeEEE
Confidence                  14689999999999999955787432  2234444567788887652    455555554

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=83.41  E-value=1.9  Score=23.99  Aligned_cols=26  Identities=15%  Similarity=0.271  Sum_probs=19.3

Q ss_pred             cCeEEEeCCeEEEEecCCeEEEEecCC
Q 036099          194 MRSVYSRGGILYSITDQGTIVCYNIEA  220 (279)
Q Consensus       194 ~~~v~~~~g~ly~l~~~~~i~~fD~~~  220 (279)
                      ..++..+ |.+|.-+..+.+.+||.+|
T Consensus        15 ~~~~v~~-g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen   15 SSPAVAG-GRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             S--EECT-SEEEEE-TTSEEEEEETT-
T ss_pred             cCCEEEC-CEEEEEcCCCEEEEEeCCC
Confidence            3456677 9999999999999999875

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=82.57  E-value=31  Score=29.77  Aligned_cols=119  Identities=17%  Similarity=0.231  Sum_probs=58.4

Q ss_pred             EEEecCCCCCceEEEEEEeccccceEEEEeCC--CCCccccccCCC-CCceeeeeccCeEEEe-CCe-EEEEe-cCCeEE
Q 036099          141 ALAFDPRDSSHYKIIRFVRARMVSEAEIFSSE--TKTWINCKLNLK-PPGHILFFVMRSVYSR-GGI-LYSIT-DQGTIV  214 (279)
Q Consensus       141 ~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~--~~~W~~~~~~~~-p~~~~~~~~~~~v~~~-~g~-ly~l~-~~~~i~  214 (279)
                      .+.|++.  +.|-.|. .+.  ...+.+|+..  ++.++.++.... |...........+.+. +|+ ||.-. ..+.|.
T Consensus       196 h~~f~pd--g~~~Yv~-~e~--s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~  270 (345)
T PF10282_consen  196 HLAFSPD--GKYAYVV-NEL--SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS  270 (345)
T ss_dssp             EEEE-TT--SSEEEEE-ETT--TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred             EEEEcCC--cCEEEEe-cCC--CCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence            5567774  4443332 222  4455566544  666665543211 1111000011222222 154 45544 578899


Q ss_pred             EEec--CCCeEEEEecCCCCCCCCC-CeeEEe-eCCe-EEEEEeCCCeEEEEEeccCC
Q 036099          215 CYNI--EAPTEVEIVEVPDENYPYG-RGVIEL-CKGV-LNYANRNESKLLIWLFDDRH  267 (279)
Q Consensus       215 ~fD~--~~~~~~~i~~~P~~~~~~~-~~~l~~-~~G~-L~~~~~~~~~~~vW~l~~~~  267 (279)
                      +|++  .+.+.+.+...|-.   +. -..+.. -+|+ |+++......+.++.++...
T Consensus       271 vf~~d~~~g~l~~~~~~~~~---G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t  325 (345)
T PF10282_consen  271 VFDLDPATGTLTLVQTVPTG---GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT  325 (345)
T ss_dssp             EEEECTTTTTEEEEEEEEES---SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             EEEEecCCCceEEEEEEeCC---CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence            9998  44577776444432   22 122332 2555 55555567899999987433

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>smart00564 PQQ beta-propeller repeat

Probab=81.94  E-value=3.9  Score=21.34  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=19.6

Q ss_pred             EEeCCeEEEEecCCeEEEEecCCCe
Q 036099          198 YSRGGILYSITDQGTIVCYNIEAPT  222 (279)
Q Consensus       198 ~~~~g~ly~l~~~~~i~~fD~~~~~  222 (279)
                      ..+ |.+|.-...+.+.++|..+.+
T Consensus         4 ~~~-~~v~~~~~~g~l~a~d~~~G~   27 (33)
T smart00564        4 LSD-GTVYVGSTDGTLYALDAKTGE   27 (33)
T ss_pred             EEC-CEEEEEcCCCEEEEEEcccCc
Confidence            345 789988888999999998765

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF13013 F-box-like_2: F-box-like domain

Probab=81.87  E-value=1.9  Score=30.40  Aligned_cols=29  Identities=10%  Similarity=0.051  Sum_probs=24.0

Q ss_pred             CCCCCHHHHHHHHhcCChhhhHHHhhhhH
Q 036099            3 QISLSEDLITEILCRLPVKSVTRFKIVSK   31 (279)
Q Consensus         3 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK   31 (279)
                      +.+||+||++.|+..-....+...-..|+
T Consensus        22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   22 LLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            56799999999999999888766666665

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=80.67  E-value=2.1  Score=25.12  Aligned_cols=22  Identities=14%  Similarity=0.027  Sum_probs=18.3

Q ss_pred             CeeEEEEcCCCccccccCCCCc
Q 036099          112 EHRYYVCNPLTKQCVAIPKARE  133 (279)
Q Consensus       112 ~~~~~v~NP~T~~~~~lP~~~~  133 (279)
                      .+.++++|+.|++|..+++.|.
T Consensus        18 ~nd~~~~~~~~~~W~~~~~~P~   39 (49)
T PF13415_consen   18 LNDVWVFDLDTNTWTRIGDLPP   39 (49)
T ss_pred             ecCEEEEECCCCEEEECCCCCC
Confidence            3578999999999999976654

>smart00612 Kelch Kelch domain

Probab=80.60  E-value=2.7  Score=23.80  Aligned_cols=23  Identities=17%  Similarity=0.229  Sum_probs=19.1

Q ss_pred             CeeEEEEcCCCccccccCCCCcc
Q 036099          112 EHRYYVCNPLTKQCVAIPKARER  134 (279)
Q Consensus       112 ~~~~~v~NP~T~~~~~lP~~~~~  134 (279)
                      ...+.++||.|++|..+|+++..
T Consensus        14 ~~~v~~yd~~~~~W~~~~~~~~~   36 (47)
T smart00612       14 LKSVEVYDPETNKWTPLPSMPTP   36 (47)
T ss_pred             eeeEEEECCCCCeEccCCCCCCc
Confidence            35678999999999999988653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	279
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.22
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	99.01
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.83
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.82
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.79
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.78
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.76
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.75
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.72
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.72
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.72
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.72
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.7
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.69
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.68
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.5
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.47
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.44
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	98.15
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.95
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.81
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.76
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.65
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.65
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.57
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.35
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.99
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	88.98
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	88.93
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	87.73
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	87.55
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	86.56
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	85.89
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	84.76
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	83.38
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	82.65
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	80.85

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.22  E-value=8.9e-12  Score=75.94  Aligned_cols=43  Identities=23%  Similarity=0.310  Sum_probs=39.1

Q ss_pred             CCCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCCCCC
Q 036099            2 EQISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPR   44 (279)
Q Consensus         2 ~~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~   44 (279)
                      .+..||+|++.+||++||.+++.++++|||+|+.++.++.|.+
T Consensus         8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~   50 (53)
T 1fs1_A            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ   50 (53)
T ss_dssp             -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred             CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            4689999999999999999999999999999999999888765

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=99.01  E-value=9.7e-11  Score=96.32  Aligned_cols=44  Identities=20%  Similarity=0.412  Sum_probs=41.3

Q ss_pred             CCCCCCHHHHHHHHhcCChhhhH-HHhhhhHHHHhhhcCCCCCCc
Q 036099            2 EQISLSEDLITEILCRLPVKSVT-RFKIVSKAWNNLISNVCIPRI   45 (279)
Q Consensus         2 ~~~~LP~Dll~eIL~rLP~~~l~-r~r~VcK~W~~li~~~~F~~~   45 (279)
                      .+..||+||+.+||+|||+++|+ |+++|||+|+.+++++.|.+.
T Consensus        50 ~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~   94 (297)
T 2e31_A           50 YLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLL   94 (297)
T ss_dssp             CTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHH
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHH
Confidence            47899999999999999999999 999999999999999998764

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.83  E-value=3.8e-07  Score=75.81  Aligned_cols=163  Identities=14%  Similarity=0.223  Sum_probs=103.0

Q ss_pred             eccCcEEEEeeec----CCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccc-cceEEEEeCC
Q 036099           98 DSCNGLILLGSSL----REHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARM-VSEAEIFSSE  172 (279)
Q Consensus        98 ~s~~Glll~~~~~----~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~-~~~~~vy~s~  172 (279)
                      ...+|.|++..+.    ....++++||.|++|..+|+++..+....... ++    +...|+.-..... ...+++|+..
T Consensus        58 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~----~~iyv~GG~~~~~~~~~~~~~d~~  132 (302)
T 2xn4_A           58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV-LN----GLLYAVGGFDGSTGLSSVEAYNIK  132 (302)
T ss_dssp             EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ET----TEEEEEEEECSSCEEEEEEEEETT
T ss_pred             EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE-EC----CEEEEEcCCCCCccCceEEEEeCC
Confidence            3446666665421    23568999999999999998776433322222 21    3223333222111 4578999999


Q ss_pred             CCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec--------CCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEee
Q 036099          173 TKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD--------QGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELC  244 (279)
Q Consensus       173 ~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~--------~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~  244 (279)
                      +++|+.....  |..   ......+.++ |++|.++.        ...+..||+.+++|+.+.++|..   .....++..
T Consensus       133 ~~~W~~~~~~--p~~---r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~~~~  203 (302)
T 2xn4_A          133 SNEWFHVAPM--NTR---RSSVGVGVVG-GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTR---RSGAGVGVL  203 (302)
T ss_dssp             TTEEEEECCC--SSC---CBSCEEEEET-TEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSC---CBSCEEEEE
T ss_pred             CCeEeecCCC--CCc---ccCceEEEEC-CEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccc---cccccEEEE
Confidence            9999988765  321   2234556778 99999982        35699999999999999445542   223455667


Q ss_pred             CCeEEEEEeCCC---eEEEEEeccCCCCCcccccccC
Q 036099          245 KGVLNYANRNES---KLLIWLFDDRHHNNSHSGSKAA  278 (279)
Q Consensus       245 ~G~L~~~~~~~~---~~~vW~l~~~~~~~~w~w~k~~  278 (279)
                      +|+|+++.....   .-++|+++-..    -.|++++
T Consensus       204 ~~~iyv~GG~~~~~~~~~~~~yd~~~----~~W~~~~  236 (302)
T 2xn4_A          204 NNLLYAVGGHDGPLVRKSVEVYDPTT----NAWRQVA  236 (302)
T ss_dssp             TTEEEEECCBSSSSBCCCEEEEETTT----TEEEEEC
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCC----CCEeeCC
Confidence            999999986531   23466666432    2566553

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.82  E-value=8.1e-07  Score=74.46  Aligned_cols=166  Identities=10%  Similarity=0.116  Sum_probs=103.6

Q ss_pred             eEeeccCcEEEEeeec----------CCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEec-c--
Q 036099           95 KLFDSCNGLILLGSSL----------REHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRA-R--  161 (279)
Q Consensus        95 ~~~~s~~Glll~~~~~----------~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~-~--  161 (279)
                      ..+...+|.|++..+.          ....++++||.|++|..+|+++..+....... ++    +.-.|+..... .  
T Consensus        50 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~----~~iyv~GG~~~~~~~  124 (318)
T 2woz_A           50 SSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGE-VD----DKIYVVAGKDLQTEA  124 (318)
T ss_dssp             EEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEE-ET----TEEEEEEEEBTTTCC
T ss_pred             eEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEE-EC----CEEEEEcCccCCCCc
Confidence            3444556666655421          01238899999999999988776433222222 11    32333333221 1  


Q ss_pred             ccceEEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec-------CCeEEEEecCCCeEEEEecCCCCCC
Q 036099          162 MVSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD-------QGTIVCYNIEAPTEVEIVEVPDENY  234 (279)
Q Consensus       162 ~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~-------~~~i~~fD~~~~~~~~i~~~P~~~~  234 (279)
                      ....+++|+..+++|+.....  |..   ......+.++ |++|.++.       ...+..||+.+++|+.+.++|..  
T Consensus       125 ~~~~~~~yd~~~~~W~~~~~~--p~~---r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--  196 (318)
T 2woz_A          125 SLDSVLCYDPVAAKWSEVKNL--PIK---VYGHNVISHN-GMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTP--  196 (318)
T ss_dssp             EEEEEEEEETTTTEEEEECCC--SSC---EESCEEEEET-TEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred             ccceEEEEeCCCCCEeECCCC--CCc---ccccEEEEEC-CEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCC--
Confidence            156789999999999988755  322   2334566788 99999983       35699999999999999444532  


Q ss_pred             CCCCeeEEeeCCeEEEEEeCC---CeEEEEEeccCCCCCcccccccC
Q 036099          235 PYGRGVIELCKGVLNYANRNE---SKLLIWLFDDRHHNNSHSGSKAA  278 (279)
Q Consensus       235 ~~~~~~l~~~~G~L~~~~~~~---~~~~vW~l~~~~~~~~w~w~k~~  278 (279)
                       ......+..+|+|++++...   ..-.+|+++-..    -.|++++
T Consensus       197 -r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~----~~W~~~~  238 (318)
T 2woz_A          197 -RSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKT----NKWEVMT  238 (318)
T ss_dssp             -CBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTT----CCEEECC
T ss_pred             -cccceEEEECCEEEEEcCcCCCCccceEEEEECCC----CeEEECC
Confidence             22234556799999998643   223577776432    2566653

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.79  E-value=2.5e-07  Score=77.10  Aligned_cols=161  Identities=10%  Similarity=0.032  Sum_probs=102.4

Q ss_pred             eccCcEEEEeee---cCCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEecc----ccceEEEEe
Q 036099           98 DSCNGLILLGSS---LREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRAR----MVSEAEIFS  170 (279)
Q Consensus        98 ~s~~Glll~~~~---~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~----~~~~~~vy~  170 (279)
                      ...+|.|++..+   .....+.++||.|++|..+|+++..+....... ++    +  +++.+.-..    ....+++|+
T Consensus        52 ~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~----~--~iyv~GG~~~~~~~~~~~~~~d  124 (306)
T 3ii7_A           52 VFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA-AE----G--KIYTSGGSEVGNSALYLFECYD  124 (306)
T ss_dssp             EEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE-ET----T--EEEEECCBBTTBSCCCCEEEEE
T ss_pred             EEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE-EC----C--EEEEECCCCCCCcEeeeEEEEe
Confidence            345666665542   124678999999999999988765433222221 21    2  233332211    156799999


Q ss_pred             CCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec----------CCeEEEEecCCCeEEEEecCCCCCCCCCCee
Q 036099          171 SETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD----------QGTIVCYNIEAPTEVEIVEVPDENYPYGRGV  240 (279)
Q Consensus       171 s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~----------~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~  240 (279)
                      ..+++|+.....  |..   ......+.++ |++|.++.          ...+..||+.+++|+.+.++|..   .....
T Consensus       125 ~~~~~W~~~~~~--p~~---r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~~  195 (306)
T 3ii7_A          125 TRTESWHTKPSM--LTQ---RCSHGMVEAN-GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEA---RKNHG  195 (306)
T ss_dssp             TTTTEEEEECCC--SSC---CBSCEEEEET-TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSC---CBSCE
T ss_pred             CCCCceEeCCCC--cCC---cceeEEEEEC-CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccch---hhcce
Confidence            999999988665  321   2334567788 99999983          56799999999999999444542   22344


Q ss_pred             EEeeCCeEEEEEeCCC---eEEEEEeccCCCCCcccccccC
Q 036099          241 IELCKGVLNYANRNES---KLLIWLFDDRHHNNSHSGSKAA  278 (279)
Q Consensus       241 l~~~~G~L~~~~~~~~---~~~vW~l~~~~~~~~w~w~k~~  278 (279)
                      ++..+|+|++++....   .-.||+++-..    -.|++++
T Consensus       196 ~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~----~~W~~~~  232 (306)
T 3ii7_A          196 LVFVKDKIFAVGGQNGLGGLDNVEYYDIKL----NEWKMVS  232 (306)
T ss_dssp             EEEETTEEEEECCEETTEEBCCEEEEETTT----TEEEECC
T ss_pred             EEEECCEEEEEeCCCCCCCCceEEEeeCCC----CcEEECC
Confidence            5666999999976431   22466665432    2466553

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.78  E-value=4.8e-07  Score=75.36  Aligned_cols=155  Identities=8%  Similarity=0.018  Sum_probs=100.3

Q ss_pred             eeccCcEEEEeeec-----CCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccc-----cceE
Q 036099           97 FDSCNGLILLGSSL-----REHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARM-----VSEA  166 (279)
Q Consensus        97 ~~s~~Glll~~~~~-----~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~-----~~~~  166 (279)
                      ....+|.+++..+.     ....++++||.|++|..+|+++..+....... ++    +...|+.......     ...+
T Consensus        97 ~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~----~~iyv~GG~~~~~~~~~~~~~~  171 (306)
T 3ii7_A           97 ACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-AN----GLIYVCGGSLGNNVSGRVLNSC  171 (306)
T ss_dssp             EEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ET----TEEEEECCEESCTTTCEECCCE
T ss_pred             EEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-EC----CEEEEECCCCCCCCcccccceE
Confidence            33446766665421     23568999999999999988775433332222 21    3223333222211     4568


Q ss_pred             EEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec------CCeEEEEecCCCeEEEEecCCCCCCCCCCee
Q 036099          167 EIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD------QGTIVCYNIEAPTEVEIVEVPDENYPYGRGV  240 (279)
Q Consensus       167 ~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~------~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~  240 (279)
                      ++|+.++++|+.+...  |..   ......+.++ |++|.++.      ...+..||+.+++|+.+.++|..   .....
T Consensus       172 ~~yd~~~~~W~~~~~~--p~~---r~~~~~~~~~-~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~~  242 (306)
T 3ii7_A          172 EVYDPATETWTELCPM--IEA---RKNHGLVFVK-DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK---GVTVK  242 (306)
T ss_dssp             EEEETTTTEEEEECCC--SSC---CBSCEEEEET-TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC---BSCCE
T ss_pred             EEeCCCCCeEEECCCc--cch---hhcceEEEEC-CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC---cccee
Confidence            9999999999988755  321   2234567778 99999983      36799999999999999555542   22344


Q ss_pred             EEeeCCeEEEEEeCC---CeEEEEEecc
Q 036099          241 IELCKGVLNYANRNE---SKLLIWLFDD  265 (279)
Q Consensus       241 l~~~~G~L~~~~~~~---~~~~vW~l~~  265 (279)
                      .+..+|+|+++....   ..-+||+++.
T Consensus       243 ~~~~~~~i~v~GG~~~~~~~~~~~~yd~  270 (306)
T 3ii7_A          243 CAAVGSIVYVLAGFQGVGRLGHILEYNT  270 (306)
T ss_dssp             EEEETTEEEEEECBCSSSBCCEEEEEET
T ss_pred             EEEECCEEEEEeCcCCCeeeeeEEEEcC
Confidence            555699999998753   2235777764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.76  E-value=5.4e-07  Score=75.44  Aligned_cols=147  Identities=7%  Similarity=0.005  Sum_probs=95.8

Q ss_pred             eEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEe----ccccceEEEEeCCCCCccccccCCCCCcee
Q 036099          114 RYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVR----ARMVSEAEIFSSETKTWINCKLNLKPPGHI  189 (279)
Q Consensus       114 ~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~----~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~  189 (279)
                      .++++||.|++|..+|+++..+....... ++    +.-.|+.-..    ......+++|+..+++|+.....  |..  
T Consensus        68 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~----~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~--  138 (315)
T 4asc_A           68 YFLQFDHLDSEWLGMPPLPSPRCLFGLGE-AL----NSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL--PYV--  138 (315)
T ss_dssp             EEEEEETTTTEEEECCCBSSCEESCEEEE-ET----TEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC--SSC--
T ss_pred             ceEEecCCCCeEEECCCCCcchhceeEEE-EC----CEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC--CCc--
Confidence            48899999999999988775432222221 11    2222222221    11256799999999999988765  321  


Q ss_pred             eeeccCeEEEeCCeEEEEec-------CCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCC---CeEE
Q 036099          190 LFFVMRSVYSRGGILYSITD-------QGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNE---SKLL  259 (279)
Q Consensus       190 ~~~~~~~v~~~~g~ly~l~~-------~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~---~~~~  259 (279)
                       .....++.++ |++|.++.       ...+..||+.+++|+.+.++|..   ......+..+|+|++++...   ..-.
T Consensus       139 -r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~~~~~~~iyv~GG~~~~~~~~~  213 (315)
T 4asc_A          139 -VYGHTVLSHM-DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTA---RSLFGATVHDGRIIVAAGVTDTGLTSS  213 (315)
T ss_dssp             -CBSCEEEEET-TEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSC---CBSCEEEEETTEEEEEEEECSSSEEEE
T ss_pred             -ccceeEEEEC-CEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCc---hhceEEEEECCEEEEEeccCCCCccce
Confidence             2334567788 99999984       36799999999999998445542   22344556799999998654   2235


Q ss_pred             EEEeccCCCCCcccccccC
Q 036099          260 IWLFDDRHHNNSHSGSKAA  278 (279)
Q Consensus       260 vW~l~~~~~~~~w~w~k~~  278 (279)
                      +|+++-..    -.|++++
T Consensus       214 ~~~yd~~~----~~W~~~~  228 (315)
T 4asc_A          214 AEVYSITD----NKWAPFE  228 (315)
T ss_dssp             EEEEETTT----TEEEEEC
T ss_pred             EEEEECCC----CeEEECC
Confidence            77776433    2566653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.75  E-value=6e-07  Score=74.96  Aligned_cols=163  Identities=12%  Similarity=0.065  Sum_probs=101.9

Q ss_pred             eccCcEEEEeeec--------CCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEecc-ccceEEE
Q 036099           98 DSCNGLILLGSSL--------REHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRAR-MVSEAEI  168 (279)
Q Consensus        98 ~s~~Glll~~~~~--------~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~-~~~~~~v  168 (279)
                      ...+|.|++..+.        ....++++||.|++|..+|+++..+....... ++    +.-.|+.-.... ....+++
T Consensus        67 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~----~~iyv~GG~~~~~~~~~~~~  141 (308)
T 1zgk_A           67 CVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV-ID----GHIYAVGGSHGCIHHNSVER  141 (308)
T ss_dssp             EEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE-ET----TEEEEECCEETTEECCCEEE
T ss_pred             EEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE-EC----CEEEEEcCCCCCcccccEEE
Confidence            3446666655422        12468999999999999998776433322222 21    222222221111 1457899


Q ss_pred             EeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec------CCeEEEEecCCCeEEEEecCCCCCCCCCCeeEE
Q 036099          169 FSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD------QGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIE  242 (279)
Q Consensus       169 y~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~------~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~  242 (279)
                      |+..+++|+.....  |..   ......+.++ |++|.++.      ...+..||+.+++|+.+..+|..   ......+
T Consensus       142 yd~~~~~W~~~~~~--p~~---r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~~  212 (308)
T 1zgk_A          142 YEPERDEWHLVAPM--LTR---RIGVGVAVLN-RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI---RSGAGVC  212 (308)
T ss_dssp             EETTTTEEEECCCC--SSC---CBSCEEEEET-TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC---CBSCEEE
T ss_pred             ECCCCCeEeECCCC--Ccc---ccceEEEEEC-CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCc---cccceEE
Confidence            99999999988765  321   1234566778 99999983      46799999999999998444542   2233455


Q ss_pred             eeCCeEEEEEeCC---CeEEEEEeccCCCCCcccccccC
Q 036099          243 LCKGVLNYANRNE---SKLLIWLFDDRHHNNSHSGSKAA  278 (279)
Q Consensus       243 ~~~G~L~~~~~~~---~~~~vW~l~~~~~~~~w~w~k~~  278 (279)
                      ..+++|+++....   ..-++|+++-..    -.|+++.
T Consensus       213 ~~~~~iyv~GG~~~~~~~~~v~~yd~~~----~~W~~~~  247 (308)
T 1zgk_A          213 VLHNCIYAAGGYDGQDQLNSVERYDVET----ETWTFVA  247 (308)
T ss_dssp             EETTEEEEECCBCSSSBCCCEEEEETTT----TEEEECC
T ss_pred             EECCEEEEEeCCCCCCccceEEEEeCCC----CcEEECC
Confidence            5699999998653   234466666432    2566653

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.72  E-value=1.2e-06  Score=72.69  Aligned_cols=154  Identities=9%  Similarity=0.083  Sum_probs=98.0

Q ss_pred             eccCcEEEEeeecC----CeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccc---cceEEEEe
Q 036099           98 DSCNGLILLGSSLR----EHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARM---VSEAEIFS  170 (279)
Q Consensus        98 ~s~~Glll~~~~~~----~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~---~~~~~vy~  170 (279)
                      ...+|.+.+..+..    ...+.++||.|++|..+++++..+....... ++    +.-.|+.-.....   ...+++|+
T Consensus       105 ~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~----~~iyv~GG~~~~~~~~~~~~~~yd  179 (302)
T 2xn4_A          105 AVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VG----GLLYAVGGYDVASRQCLSTVECYN  179 (302)
T ss_dssp             EEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ET----TEEEEECCEETTTTEECCCEEEEE
T ss_pred             EEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-EC----CEEEEEeCCCCCCCccccEEEEEe
Confidence            34467666654211    2468899999999999988775433322222 21    2222222222111   45689999


Q ss_pred             CCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec------CCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEee
Q 036099          171 SETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD------QGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELC  244 (279)
Q Consensus       171 s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~------~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~  244 (279)
                      ..+++|+.+...  |..   ......+.++ |++|.++.      ...+..||+.+++|+.+..+|..   .....++..
T Consensus       180 ~~~~~W~~~~~~--p~~---r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~---r~~~~~~~~  250 (302)
T 2xn4_A          180 ATTNEWTYIAEM--STR---RSGAGVGVLN-NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC---RRNAGVCAV  250 (302)
T ss_dssp             TTTTEEEEECCC--SSC---CBSCEEEEET-TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC---CBSCEEEEE
T ss_pred             CCCCcEEECCCC--ccc---cccccEEEEC-CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc---cccCeEEEE
Confidence            999999988655  321   1234567778 99999983      45799999999999999445542   123345567


Q ss_pred             CCeEEEEEeCC---CeEEEEEecc
Q 036099          245 KGVLNYANRNE---SKLLIWLFDD  265 (279)
Q Consensus       245 ~G~L~~~~~~~---~~~~vW~l~~  265 (279)
                      +|+|+++....   ..-+||+++-
T Consensus       251 ~~~i~v~GG~~~~~~~~~v~~yd~  274 (302)
T 2xn4_A          251 NGLLYVVGGDDGSCNLASVEYYNP  274 (302)
T ss_dssp             TTEEEEECCBCSSSBCCCEEEEET
T ss_pred             CCEEEEECCcCCCcccccEEEEcC
Confidence            99999998754   1234666653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.72  E-value=7.7e-07  Score=74.49  Aligned_cols=154  Identities=8%  Similarity=0.030  Sum_probs=99.7

Q ss_pred             eeccCcEEEEeeec-------CCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEec--cc--cce
Q 036099           97 FDSCNGLILLGSSL-------REHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRA--RM--VSE  165 (279)
Q Consensus        97 ~~s~~Glll~~~~~-------~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~--~~--~~~  165 (279)
                      ++..+|.+.+..+.       ....++++||.|++|..+++++..+....... ++    +  +++.+.-.  +.  ...
T Consensus        94 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~----~--~iyv~GG~~~~~~~~~~  166 (315)
T 4asc_A           94 LGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HM----D--LVYVIGGKGSDRKCLNK  166 (315)
T ss_dssp             EEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ET----T--EEEEECCBCTTSCBCCC
T ss_pred             EEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-EC----C--EEEEEeCCCCCCcccce
Confidence            33446666665421       23568999999999999988765433222222 11    2  23333322  11  567


Q ss_pred             EEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec------CCeEEEEecCCCeEEEEecCCCCCCCCCCe
Q 036099          166 AEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD------QGTIVCYNIEAPTEVEIVEVPDENYPYGRG  239 (279)
Q Consensus       166 ~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~------~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~  239 (279)
                      +++|+..+++|+.+...  |..   .....++.++ |++|.++.      ...+..||+.+++|+.+.++|..   ....
T Consensus       167 ~~~yd~~~~~W~~~~~~--p~~---r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~  237 (315)
T 4asc_A          167 MCVYDPKKFEWKELAPM--QTA---RSLFGATVHD-GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE---RSSL  237 (315)
T ss_dssp             EEEEETTTTEEEECCCC--SSC---CBSCEEEEET-TEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC---CBSC
T ss_pred             EEEEeCCCCeEEECCCC--CCc---hhceEEEEEC-CEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc---ccce
Confidence            99999999999988765  321   2234567778 99999983      24789999999999999444542   2234


Q ss_pred             eEEeeCCeEEEEEeCC------------CeEEEEEeccC
Q 036099          240 VIELCKGVLNYANRNE------------SKLLIWLFDDR  266 (279)
Q Consensus       240 ~l~~~~G~L~~~~~~~------------~~~~vW~l~~~  266 (279)
                      .++..+|+|++++...            ..-+||+++-.
T Consensus       238 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~  276 (315)
T 4asc_A          238 SLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEE  276 (315)
T ss_dssp             EEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETT
T ss_pred             eEEEECCEEEEECCccccCcCCccccccccCcEEEecCC
Confidence            4556799999998642            12357887743

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.72  E-value=6.4e-07  Score=75.11  Aligned_cols=164  Identities=9%  Similarity=0.085  Sum_probs=102.7

Q ss_pred             EeeccCcEEEEeeecC------CeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEecc--ccceEE
Q 036099           96 LFDSCNGLILLGSSLR------EHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRAR--MVSEAE  167 (279)
Q Consensus        96 ~~~s~~Glll~~~~~~------~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~--~~~~~~  167 (279)
                      .++..+|.+.+..+..      ...+.++||.|++|..+++++.......... ++    +.-.|+.-...+  ....++
T Consensus       104 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~----~~iyv~GG~~~~~~~~~~~~  178 (318)
T 2woz_A          104 GLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HN----GMIYCLGGKTDDKKCTNRVF  178 (318)
T ss_dssp             EEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ET----TEEEEECCEESSSCBCCCEE
T ss_pred             ceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-EC----CEEEEEcCCCCCCCccceEE
Confidence            3344466666654221      2568999999999999987765432222222 11    222233222211  155699


Q ss_pred             EEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec------CCeEEEEecCCCeEEEEecCCCCCCCCCCeeE
Q 036099          168 IFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD------QGTIVCYNIEAPTEVEIVEVPDENYPYGRGVI  241 (279)
Q Consensus       168 vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~------~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l  241 (279)
                      +|+..+++|+.+...  |..   ......+.++ |++|.++.      ...+..||+.+++|+.+.++|..   .....+
T Consensus       179 ~yd~~~~~W~~~~~~--p~~---r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~---r~~~~~  249 (318)
T 2woz_A          179 IYNPKKGDWKDLAPM--KTP---RSMFGVAIHK-GKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE---RSSISL  249 (318)
T ss_dssp             EEETTTTEEEEECCC--SSC---CBSCEEEEET-TEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC---CBSCEE
T ss_pred             EEcCCCCEEEECCCC--CCC---cccceEEEEC-CEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc---ccceEE
Confidence            999999999988755  321   1233557778 99999983      25678999999999998555543   223345


Q ss_pred             EeeCCeEEEEEeCCC------------eEEEEEeccCCCCCccccccc
Q 036099          242 ELCKGVLNYANRNES------------KLLIWLFDDRHHNNSHSGSKA  277 (279)
Q Consensus       242 ~~~~G~L~~~~~~~~------------~~~vW~l~~~~~~~~w~w~k~  277 (279)
                      +..+|+|++++....            .-+||+++-..    -.|+++
T Consensus       250 ~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~----~~W~~~  293 (318)
T 2woz_A          250 VSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDK----KEWAGM  293 (318)
T ss_dssp             EEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTT----TEEEEE
T ss_pred             EEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCC----CEehhh
Confidence            667899999976431            24588877433    256554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.72  E-value=1.3e-06  Score=72.53  Aligned_cols=152  Identities=8%  Similarity=0.011  Sum_probs=98.2

Q ss_pred             eccCcEEEEeeec----CCeeEEEEcCCCcc---ccccCCCCccCCCcccEEEecCCCCCceEEEEEEec-c--ccceEE
Q 036099           98 DSCNGLILLGSSL----REHRYYVCNPLTKQ---CVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRA-R--MVSEAE  167 (279)
Q Consensus        98 ~s~~Glll~~~~~----~~~~~~v~NP~T~~---~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~-~--~~~~~~  167 (279)
                      ...+|.+++..+.    ....++++||.|++   |..+|+++..+....... ++    +  +++.+... +  ....++
T Consensus        59 ~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~-~~----~--~lyv~GG~~~~~~~~~~~  131 (301)
T 2vpj_A           59 VSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT-LG----D--MIYVSGGFDGSRRHTSME  131 (301)
T ss_dssp             EEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE-ET----T--EEEEECCBCSSCBCCEEE
T ss_pred             EEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE-EC----C--EEEEEcccCCCcccceEE
Confidence            3446666555421    23568999999999   999988775433332222 21    2  33333221 1  145799


Q ss_pred             EEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec------CCeEEEEecCCCeEEEEecCCCCCCCCCCeeE
Q 036099          168 IFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD------QGTIVCYNIEAPTEVEIVEVPDENYPYGRGVI  241 (279)
Q Consensus       168 vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~------~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l  241 (279)
                      +|+..+++|+.+...  |..   ......+.++ |++|.++.      ...+..||+.+++|+.+.++|..   .....+
T Consensus       132 ~~d~~~~~W~~~~~~--p~~---r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~---r~~~~~  202 (301)
T 2vpj_A          132 RYDPNIDQWSMLGDM--QTA---REGAGLVVAS-GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATK---RSGAGV  202 (301)
T ss_dssp             EEETTTTEEEEEEEC--SSC---CBSCEEEEET-TEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSC---CBSCEE
T ss_pred             EEcCCCCeEEECCCC--CCC---cccceEEEEC-CEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcc---cccceE
Confidence            999999999988765  321   1234566778 99999983      46799999999999999445542   223445


Q ss_pred             EeeCCeEEEEEeCCC---eEEEEEecc
Q 036099          242 ELCKGVLNYANRNES---KLLIWLFDD  265 (279)
Q Consensus       242 ~~~~G~L~~~~~~~~---~~~vW~l~~  265 (279)
                      +..+++|+++.....   .-+||+++-
T Consensus       203 ~~~~~~i~v~GG~~~~~~~~~v~~yd~  229 (301)
T 2vpj_A          203 ALLNDHIYVVGGFDGTAHLSSVEAYNI  229 (301)
T ss_dssp             EEETTEEEEECCBCSSSBCCCEEEEET
T ss_pred             EEECCEEEEEeCCCCCcccceEEEEeC
Confidence            567899999986531   234666653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.70  E-value=1.1e-06  Score=72.99  Aligned_cols=154  Identities=11%  Similarity=0.087  Sum_probs=99.7

Q ss_pred             eeccCcEEEEeeec----CCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEecc---ccceEEEE
Q 036099           97 FDSCNGLILLGSSL----REHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRAR---MVSEAEIF  169 (279)
Q Consensus        97 ~~s~~Glll~~~~~----~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~---~~~~~~vy  169 (279)
                      ....+|.+.+..+.    ....+.++||.|++|..+|+++..+....... ++    +  +++.+.-..   ....+++|
T Consensus       108 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~----~--~iyv~GG~~~~~~~~~~~~~  180 (301)
T 2vpj_A          108 ATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-AS----G--VIYCLGGYDGLNILNSVEKY  180 (301)
T ss_dssp             EEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ET----T--EEEEECCBCSSCBCCCEEEE
T ss_pred             EEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-EC----C--EEEEECCCCCCcccceEEEE
Confidence            33446776666521    13568999999999999987765433222222 21    2  233332211   15678999


Q ss_pred             eCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec------CCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEe
Q 036099          170 SSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD------QGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIEL  243 (279)
Q Consensus       170 ~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~------~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~  243 (279)
                      +..+++|+.+...  |..   ......+.++ |.+|.++.      ...+..||+.+++|+.+..+|..   ......+.
T Consensus       181 d~~~~~W~~~~~~--p~~---r~~~~~~~~~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~---r~~~~~~~  251 (301)
T 2vpj_A          181 DPHTGHWTNVTPM--ATK---RSGAGVALLN-DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP---RCYVGATV  251 (301)
T ss_dssp             ETTTTEEEEECCC--SSC---CBSCEEEEET-TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC---CBSCEEEE
T ss_pred             eCCCCcEEeCCCC--Ccc---cccceEEEEC-CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc---ccceeEEE
Confidence            9999999988654  321   1234567778 99999983      46799999999999999445542   12234555


Q ss_pred             eCCeEEEEEeCC---CeEEEEEeccC
Q 036099          244 CKGVLNYANRNE---SKLLIWLFDDR  266 (279)
Q Consensus       244 ~~G~L~~~~~~~---~~~~vW~l~~~  266 (279)
                      .+|+|+++....   ..-.||+++-.
T Consensus       252 ~~~~i~v~GG~~~~~~~~~v~~yd~~  277 (301)
T 2vpj_A          252 LRGRLYAIAGYDGNSLLSSIECYDPI  277 (301)
T ss_dssp             ETTEEEEECCBCSSSBEEEEEEEETT
T ss_pred             ECCEEEEEcCcCCCcccccEEEEcCC
Confidence            699999998654   22457777643

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.69  E-value=1.1e-06  Score=73.31  Aligned_cols=154  Identities=10%  Similarity=0.055  Sum_probs=99.1

Q ss_pred             eeccCcEEEEeeec----CCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEecc---ccceEEEE
Q 036099           97 FDSCNGLILLGSSL----REHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRAR---MVSEAEIF  169 (279)
Q Consensus        97 ~~s~~Glll~~~~~----~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~---~~~~~~vy  169 (279)
                      +...+|.+.+..+.    ....+.++||.|++|..+++++..+....... ++    +  +++.+.-..   ....+++|
T Consensus       117 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~----~--~iyv~GG~~~~~~~~~~~~y  189 (308)
T 1zgk_A          117 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-LN----R--LLYAVGGFDGTNRLNSAECY  189 (308)
T ss_dssp             EEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ET----T--EEEEECCBCSSCBCCCEEEE
T ss_pred             EEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE-EC----C--EEEEEeCCCCCCcCceEEEE
Confidence            33446766665421    13568899999999999988765433222222 21    2  333332211   15679999


Q ss_pred             eCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec------CCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEe
Q 036099          170 SSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD------QGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIEL  243 (279)
Q Consensus       170 ~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~------~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~  243 (279)
                      +..+++|+.+...  |..   ......+.++ |++|.++.      ...+..||+.+++|+.+.++|..   .....++.
T Consensus       190 d~~~~~W~~~~~~--p~~---r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~---r~~~~~~~  260 (308)
T 1zgk_A          190 YPERNEWRMITAM--NTI---RSGAGVCVLH-NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR---RSALGITV  260 (308)
T ss_dssp             ETTTTEEEECCCC--SSC---CBSCEEEEET-TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC---CBSCEEEE
T ss_pred             eCCCCeEeeCCCC--CCc---cccceEEEEC-CEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC---ccceEEEE
Confidence            9999999988765  321   1234567778 99999983      36799999999999998444432   22344555


Q ss_pred             eCCeEEEEEeCC---CeEEEEEeccC
Q 036099          244 CKGVLNYANRNE---SKLLIWLFDDR  266 (279)
Q Consensus       244 ~~G~L~~~~~~~---~~~~vW~l~~~  266 (279)
                      .+|+|+++....   ..-+||+++..
T Consensus       261 ~~~~i~v~GG~~~~~~~~~v~~yd~~  286 (308)
T 1zgk_A          261 HQGRIYVLGGYDGHTFLDSVECYDPD  286 (308)
T ss_dssp             ETTEEEEECCBCSSCBCCEEEEEETT
T ss_pred             ECCEEEEEcCcCCCcccceEEEEcCC
Confidence            689999998643   23457777643

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.68  E-value=8.4e-07  Score=75.55  Aligned_cols=155  Identities=11%  Similarity=0.121  Sum_probs=99.0

Q ss_pred             eccCcEEEEeeecCCeeEEEEcCC--CccccccCCCC-ccCCCcccEEEecCCCCCceEEEEEEec--c----ccceEEE
Q 036099           98 DSCNGLILLGSSLREHRYYVCNPL--TKQCVAIPKAR-ERVLESAPALAFDPRDSSHYKIIRFVRA--R----MVSEAEI  168 (279)
Q Consensus        98 ~s~~Glll~~~~~~~~~~~v~NP~--T~~~~~lP~~~-~~~~~~~~~lg~d~~~~~~ykvv~~~~~--~----~~~~~~v  168 (279)
                      +..+|.|.+..+.....++++||.  +++|..+|+++ ..+...... .++    +.-.|+.-...  .    ....+++
T Consensus        16 ~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~-~~~----~~lyv~GG~~~~~~~~~~~~~~v~~   90 (357)
T 2uvk_A           16 AIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSA-FID----GNLYVFGGIGKNSEGLTQVFNDVHK   90 (357)
T ss_dssp             EEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEE-EET----TEEEEECCEEECTTSCEEECCCEEE
T ss_pred             EEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEE-EEC----CEEEEEcCCCCCCCccceeeccEEE
Confidence            344777777664445689999998  48999998877 333222222 222    22233332211  1    1557899


Q ss_pred             EeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec---------------------------------------
Q 036099          169 FSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD---------------------------------------  209 (279)
Q Consensus       169 y~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~---------------------------------------  209 (279)
                      |+..+++|+.+.... |..   .....++.++ |++|.++.                                       
T Consensus        91 yd~~~~~W~~~~~~~-p~~---r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (357)
T 2uvk_A           91 YNPKTNSWVKLMSHA-PMG---MAGHVTFVHN-GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYF  165 (357)
T ss_dssp             EETTTTEEEECSCCC-SSC---CSSEEEEEET-TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGC
T ss_pred             EeCCCCcEEECCCCC-Ccc---cccceEEEEC-CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccC
Confidence            999999999887652 121   1233456688 99999984                                       


Q ss_pred             -CCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCC----CeEEEEEec
Q 036099          210 -QGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNE----SKLLIWLFD  264 (279)
Q Consensus       210 -~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~----~~~~vW~l~  264 (279)
                       ...+..||+.+++|+.+.++|...  .....++..+++|+++....    ..-++|.++
T Consensus       166 ~~~~v~~yd~~~~~W~~~~~~p~~~--~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d  223 (357)
T 2uvk_A          166 FNKFLLSFDPSTQQWSYAGESPWYG--TAGAAVVNKGDKTWLINGEAKPGLRTDAVFELD  223 (357)
T ss_dssp             CCCEEEEEETTTTEEEEEEECSSCC--CBSCEEEEETTEEEEECCEEETTEECCCEEEEE
T ss_pred             CcccEEEEeCCCCcEEECCCCCCCC--cccccEEEECCEEEEEeeecCCCcccCceEEEE
Confidence             258999999999999996666432  22245566799999997532    233466655

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.50  E-value=4.6e-06  Score=70.94  Aligned_cols=146  Identities=11%  Similarity=0.038  Sum_probs=88.5

Q ss_pred             eeccCcEEEEeeec---------CCeeEEEEcCCCccccccCCCC-ccCCCcccEEEecCCCCCceEEEEEEecc-----
Q 036099           97 FDSCNGLILLGSSL---------REHRYYVCNPLTKQCVAIPKAR-ERVLESAPALAFDPRDSSHYKIIRFVRAR-----  161 (279)
Q Consensus        97 ~~s~~Glll~~~~~---------~~~~~~v~NP~T~~~~~lP~~~-~~~~~~~~~lg~d~~~~~~ykvv~~~~~~-----  161 (279)
                      .+..+|.|.+..+.         ....++++||.|++|..+++++ ..+....... ++    +...|+.-....     
T Consensus        61 ~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~-~~----~~iyv~GG~~~~~~~~~  135 (357)
T 2uvk_A           61 SAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV-HN----GKAYVTGGVNQNIFNGY  135 (357)
T ss_dssp             EEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE-ET----TEEEEEECCCHHHHHHH
T ss_pred             EEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE-EC----CEEEEEeCcCCCcCccc
Confidence            33446666665422         1346899999999999998876 3222221121 21    322233221111     


Q ss_pred             ------------------------------ccceEEEEeCCCCCccccccCCCCCceeeeeccCeEEEeCCeEEEEec--
Q 036099          162 ------------------------------MVSEAEIFSSETKTWINCKLNLKPPGHILFFVMRSVYSRGGILYSITD--  209 (279)
Q Consensus       162 ------------------------------~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~~--  209 (279)
                                                    ....+++|+..+++|+.+...  |...  ......+.++ |++|.++.  
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--p~~~--~~~~~~~~~~-~~iyv~GG~~  210 (357)
T 2uvk_A          136 FEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGES--PWYG--TAGAAVVNKG-DKTWLINGEA  210 (357)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEEC--SSCC--CBSCEEEEET-TEEEEECCEE
T ss_pred             ccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCC--CCCC--cccccEEEEC-CEEEEEeeec
Confidence                                          025799999999999998665  3211  1124566778 99999973  


Q ss_pred             -----CCeEEEEec--CCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEe
Q 036099          210 -----QGTIVCYNI--EAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANR  253 (279)
Q Consensus       210 -----~~~i~~fD~--~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~  253 (279)
                           ...+..||+  .+++|+.+..+|.. .......++..+|+|+++..
T Consensus       211 ~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~iyv~GG  260 (357)
T 2uvk_A          211 KPGLRTDAVFELDFTGNNLKWNKLAPVSSP-DGVAGGFAGISNDSLIFAGG  260 (357)
T ss_dssp             ETTEECCCEEEEECC---CEEEECCCSSTT-TCCBSCEEEEETTEEEEECC
T ss_pred             CCCcccCceEEEEecCCCCcEEecCCCCCC-cccccceEEEECCEEEEEcC
Confidence                 467888887  89999998445432 11223446677999999986

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.47  E-value=1.3e-05  Score=70.09  Aligned_cols=42  Identities=19%  Similarity=0.202  Sum_probs=38.2

Q ss_pred             CCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCCCCC
Q 036099            3 QISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPR   44 (279)
Q Consensus         3 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~   44 (279)
                      +..||+|++..||+.|++++|.++++|||+|+.++.++.+.+
T Consensus        19 ~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~   60 (445)
T 2ovr_B           19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWR   60 (445)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHH
T ss_pred             hHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhh
Confidence            568999999999999999999999999999999998876543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.44  E-value=4.1e-06  Score=73.10  Aligned_cols=41  Identities=24%  Similarity=0.380  Sum_probs=37.3

Q ss_pred             CCCCHH----HHHHHHhcCChhhhHHHhhhhHHHHhhhcCCCCCC
Q 036099            4 ISLSED----LITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPR   44 (279)
Q Consensus         4 ~~LP~D----ll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~   44 (279)
                      ..||+|    |+..||+.|++++|.++++|||+|+.++.++.+.+
T Consensus        12 ~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~   56 (435)
T 1p22_A           12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWK   56 (435)
T ss_dssp             HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHH
T ss_pred             HHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHH
Confidence            468999    99999999999999999999999999999887543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=98.15  E-value=2.3e-05  Score=72.90  Aligned_cols=165  Identities=9%  Similarity=-0.017  Sum_probs=95.2

Q ss_pred             cCcEEEEeee---cCCeeEEEEcCCCccccccC-C-----CCccCCCcccEEEecCCCCCceEEEEEEec-c---ccceE
Q 036099          100 CNGLILLGSS---LREHRYYVCNPLTKQCVAIP-K-----ARERVLESAPALAFDPRDSSHYKIIRFVRA-R---MVSEA  166 (279)
Q Consensus       100 ~~Glll~~~~---~~~~~~~v~NP~T~~~~~lP-~-----~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~-~---~~~~~  166 (279)
                      .++.|++..+   .....++++||.|++|..++ +     ++..+.... ...+...  +  +++.+.-. .   ....+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs-~~~~~~~--~--~lyv~GG~~~~~~~~~dv  470 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHT-FTTISRN--N--QLLLIGGRKAPHQGLSDN  470 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCE-EEEETTT--T--EEEEECCBSSTTCBCCCC
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceE-EEEEccC--C--EEEEEcCCCCCCCccccE
Confidence            4566655542   12456899999999999988 5     222111111 1112101  2  23333221 1   14568


Q ss_pred             EEEeCCCCCccccccCCCCCceeeeeccCeEEE-eCCeEEEEecC---CeEEEEecCCCeEEEEec----CCCCCCCCCC
Q 036099          167 EIFSSETKTWINCKLNLKPPGHILFFVMRSVYS-RGGILYSITDQ---GTIVCYNIEAPTEVEIVE----VPDENYPYGR  238 (279)
Q Consensus       167 ~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~v~~-~~g~ly~l~~~---~~i~~fD~~~~~~~~i~~----~P~~~~~~~~  238 (279)
                      ++|+..+++|+.....  |.   ......++.+ + |++|.+++.   ..+..||+.+++|+.+ .    +|.. .....
T Consensus       471 ~~yd~~t~~W~~~~~~--p~---~R~~h~~~~~~~-~~iyv~GG~~~~~~v~~yd~~t~~W~~~-~~~g~~p~~-r~~~~  542 (695)
T 2zwa_A          471 WIFDMKTREWSMIKSL--SH---TRFRHSACSLPD-GNVLILGGVTEGPAMLLYNVTEEIFKDV-TPKDEFFQN-SLVSA  542 (695)
T ss_dssp             EEEETTTTEEEECCCC--SB---CCBSCEEEECTT-SCEEEECCBCSSCSEEEEETTTTEEEEC-CCSSGGGGS-CCBSC
T ss_pred             EEEeCCCCcEEECCCC--CC---CcccceEEEEcC-CEEEEECCCCCCCCEEEEECCCCceEEc-cCCCCCCCc-cccee
Confidence            9999999999988665  32   1223345554 7 999999842   2799999999999998 5    3332 11222


Q ss_pred             eeEEeeC-CeEEEEEeCC-----CeEEEEEeccCCCC--Cccccccc
Q 036099          239 GVIELCK-GVLNYANRNE-----SKLLIWLFDDRHHN--NSHSGSKA  277 (279)
Q Consensus       239 ~~l~~~~-G~L~~~~~~~-----~~~~vW~l~~~~~~--~~w~w~k~  277 (279)
                      ..+...+ |+|++++...     ..-.+|+++-..+.  ....|+++
T Consensus       543 a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~  589 (695)
T 2zwa_A          543 GLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKK  589 (695)
T ss_dssp             EEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEE
T ss_pred             EEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEc
Confidence            2222333 8999998652     12346666543321  12357765

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.95  E-value=2.1e-06  Score=69.98  Aligned_cols=42  Identities=19%  Similarity=0.256  Sum_probs=39.0

Q ss_pred             CCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCCCCC
Q 036099            3 QISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPR   44 (279)
Q Consensus         3 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~   44 (279)
                      ++.||+|++..||+.|++++|.++.+|||+|+.+..++...+
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr   46 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWR   46 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHH
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHH
Confidence            568999999999999999999999999999999999988554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.81  E-value=1.3e-05  Score=67.39  Aligned_cols=43  Identities=23%  Similarity=0.310  Sum_probs=38.9

Q ss_pred             CCCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCCCCC
Q 036099            2 EQISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPR   44 (279)
Q Consensus         2 ~~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~   44 (279)
                      .+..||+|++.+||.+|+.+++.+++.|||+|+.++.++.+.+
T Consensus         8 ~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~   50 (336)
T 2ast_B            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ   50 (336)
T ss_dssp             CSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSS
T ss_pred             ChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhhe
Confidence            3688999999999999999999999999999999998877544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.76  E-value=9.6e-06  Score=71.12  Aligned_cols=37  Identities=24%  Similarity=0.346  Sum_probs=35.0

Q ss_pred             CCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcC
Q 036099            3 QISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISN   39 (279)
Q Consensus         3 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~   39 (279)
                      +..||+|++.+||+.||+++|.+++.|||+|+.++.+
T Consensus        15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            3569999999999999999999999999999999987

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.65  E-value=0.0002  Score=66.11  Aligned_cols=115  Identities=15%  Similarity=0.123  Sum_probs=74.6

Q ss_pred             CcEEEEeeec----------CCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEe
Q 036099          101 NGLILLGSSL----------REHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFS  170 (279)
Q Consensus       101 ~Glll~~~~~----------~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~  170 (279)
                      +|.|++....          ....+.++||.|++|..+++++..+.....+..+...  +  +++.+.-.. ...+++|+
T Consensus       197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~--g--~lyv~GG~~-~~~v~~yd  271 (656)
T 1k3i_A          197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGN--G--QIVVTGGND-AKKTSLYD  271 (656)
T ss_dssp             TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTT--S--CEEEECSSS-TTCEEEEE
T ss_pred             CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCC--C--CEEEeCCCC-CCceEEec
Confidence            7777766421          1136789999999999998765433222222222221  2  333333211 23799999


Q ss_pred             CCCCCccccccCCCCCceeeeeccCeEEE-eCCeEEEEecC-------CeEEEEecCCCeEEEE
Q 036099          171 SETKTWINCKLNLKPPGHILFFVMRSVYS-RGGILYSITDQ-------GTIVCYNIEAPTEVEI  226 (279)
Q Consensus       171 s~~~~W~~~~~~~~p~~~~~~~~~~~v~~-~~g~ly~l~~~-------~~i~~fD~~~~~~~~i  226 (279)
                      ..+++|......  |..   ......+.+ + |++|.++..       ..+-.||+.+++|+.+
T Consensus       272 ~~t~~W~~~~~~--~~~---R~~~s~~~~~d-g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          272 SSSDSWIPGPDM--QVA---RGYQSSATMSD-GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL  329 (656)
T ss_dssp             GGGTEEEECCCC--SSC---CSSCEEEECTT-SCEEEECCCCCSSSCCCCEEEEETTTTEEEEE
T ss_pred             CcCCceeECCCC--Ccc---ccccceEEecC-CeEEEEeCcccCCcccccceEeCCCCCcceeC
Confidence            999999988654  221   123345666 7 999999852       5689999999999997

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.65  E-value=0.00088  Score=62.23  Aligned_cols=154  Identities=10%  Similarity=0.017  Sum_probs=91.7

Q ss_pred             CcEEEEeeec-----CCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCCC
Q 036099          101 NGLILLGSSL-----REHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKT  175 (279)
Q Consensus       101 ~Glll~~~~~-----~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~  175 (279)
                      +|.+.+..+.     ....++++||.|++|..+++++..+....... +.  . +.-.|++..... . .+++|+..+++
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~-~~--~-~~iyv~GG~~~~-~-~v~~yd~~t~~  524 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACS-LP--D-GNVLILGGVTEG-P-AMLLYNVTEEI  524 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEE-CT--T-SCEEEECCBCSS-C-SEEEEETTTTE
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEE-Ec--C-CEEEEECCCCCC-C-CEEEEECCCCc
Confidence            6666665421     13568999999999999988775433332222 11  1 323333322211 3 89999999999


Q ss_pred             ccccccCC-CCCceeeeeccCeEEEeC--CeEEEEec--------CCeEEEEecCCCe------EEEEecCCCCCCCCCC
Q 036099          176 WINCKLNL-KPPGHILFFVMRSVYSRG--GILYSITD--------QGTIVCYNIEAPT------EVEIVEVPDENYPYGR  238 (279)
Q Consensus       176 W~~~~~~~-~p~~~~~~~~~~~v~~~~--g~ly~l~~--------~~~i~~fD~~~~~------~~~i~~~P~~~~~~~~  238 (279)
                      |......- .|.   ......++.+++  |++|.+++        ...+..||+.+++      |+.+...|...  ...
T Consensus       525 W~~~~~~g~~p~---~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~--R~~  599 (695)
T 2zwa_A          525 FKDVTPKDEFFQ---NSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQ--RYG  599 (695)
T ss_dssp             EEECCCSSGGGG---SCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGC--CBS
T ss_pred             eEEccCCCCCCC---cccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCC--ccc
Confidence            99886421 021   112234344452  67999983        2579999999999      88884434221  222


Q ss_pred             eeEEeeC-CeEEEEEeCC------CeEEEEEecc
Q 036099          239 GVIELCK-GVLNYANRNE------SKLLIWLFDD  265 (279)
Q Consensus       239 ~~l~~~~-G~L~~~~~~~------~~~~vW~l~~  265 (279)
                      ...+..+ |+|++++...      ..-.||+++-
T Consensus       600 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~  633 (695)
T 2zwa_A          600 SQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDP  633 (695)
T ss_dssp             CEEEEEETTEEEEECCBCSSCCCCTTTSEEEEET
T ss_pred             ceEEEeCCCEEEEECCccCCCCCCCCCeEEEEEC
Confidence            3344456 9999998743      1234666654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.57  E-value=0.00033  Score=64.61  Aligned_cols=126  Identities=11%  Similarity=0.076  Sum_probs=77.9

Q ss_pred             EEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEecc---------ccceEEEEeCCCCCccccccCCCC
Q 036099          115 YYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRAR---------MVSEAEIFSSETKTWINCKLNLKP  185 (279)
Q Consensus       115 ~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~---------~~~~~~vy~s~~~~W~~~~~~~~p  185 (279)
                      +..+||.+++|..++++|..    .....+.+.. +  +|+.+....         ....+++|+..+++|+......  
T Consensus       168 ~~~~dp~~~~W~~~~~~P~~----~~~~av~~~~-g--~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~--  238 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLPIV----PAAAAIEPTS-G--RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV--  238 (656)
T ss_dssp             CCCCCTTSCEEEEEEECSSC----CSEEEEETTT-T--EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE--
T ss_pred             cccCCCCCCeeeeeccCCCC----ceeEEEEecC-C--EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC--
Confidence            34568999999988777641    1222333311 2  343332211         1236899999999999886542  


Q ss_pred             CceeeeeccCeEEEeCCeEEEEec--CCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEee-CCeEEEEEe
Q 036099          186 PGHILFFVMRSVYSRGGILYSITD--QGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELC-KGVLNYANR  253 (279)
Q Consensus       186 ~~~~~~~~~~~v~~~~g~ly~l~~--~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~-~G~L~~~~~  253 (279)
                      ..........++..+ |++|..+.  ...+..||+.+++|+.+.++|..   ......+.. +|+|+++..
T Consensus       239 ~~~~~~~~~~~~~~~-g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~---R~~~s~~~~~dg~iyv~GG  305 (656)
T 1k3i_A          239 TKHDMFCPGISMDGN-GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA---RGYQSSATMSDGRVFTIGG  305 (656)
T ss_dssp             CSCCCSSCEEEECTT-SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC---CSSCEEEECTTSCEEEECC
T ss_pred             CCCCCccccccCCCC-CCEEEeCCCCCCceEEecCcCCceeECCCCCcc---ccccceEEecCCeEEEEeC
Confidence            211111111123357 99999984  45799999999999998444432   222344555 999999987

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.35  E-value=9.3e-05  Score=67.17  Aligned_cols=34  Identities=18%  Similarity=0.485  Sum_probs=29.5

Q ss_pred             CCCCCHHHHHHHHhcCC-hhhhHHHhhhhHHHHhh
Q 036099            3 QISLSEDLITEILCRLP-VKSVTRFKIVSKAWNNL   36 (279)
Q Consensus         3 ~~~LP~Dll~eIL~rLP-~~~l~r~r~VcK~W~~l   36 (279)
                      ++.||+|++.+||.+|| .+++.+++.|||+|+.+
T Consensus         6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            57899999999999999 99999999999999988

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.99  E-value=0.00024  Score=64.38  Aligned_cols=35  Identities=14%  Similarity=0.352  Sum_probs=32.3

Q ss_pred             CCCCCHHHHHHHHhcC-ChhhhHHHhhhhHHHHhhh
Q 036099            3 QISLSEDLITEILCRL-PVKSVTRFKIVSKAWNNLI   37 (279)
Q Consensus         3 ~~~LP~Dll~eIL~rL-P~~~l~r~r~VcK~W~~li   37 (279)
                      ...||||++.+||.+| |.+++.+++.|||+|+.+.
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            3579999999999999 8999999999999999874

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=88.98  E-value=9.6  Score=32.16  Aligned_cols=146  Identities=9%  Similarity=0.119  Sum_probs=80.0

Q ss_pred             ccCcEEEEeeecCCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCCCccc
Q 036099           99 SCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTWIN  178 (279)
Q Consensus        99 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~  178 (279)
                      |.+++|-+..   ...++|||..|++...+-.... +......+.|.+.  +.|-+.+-.    .-.+.+++.++++-..
T Consensus       114 S~~n~lAvgl---d~tV~lWd~~tg~~~~~~~~~~-~~~~V~sv~fspd--g~~lasgs~----Dg~v~iWd~~~~~~~~  183 (420)
T 4gga_A          114 SSGNVLAVAL---DNSVYLWSASSGDILQLLQMEQ-PGEYISSVAWIKE--GNYLAVGTS----SAEVQLWDVQQQKRLR  183 (420)
T ss_dssp             CTTSEEEEEE---TTEEEEEETTTCCEEEEEECCS-TTCCEEEEEECTT--SSEEEEEET----TSCEEEEETTTTEEEE
T ss_pred             CCCCEEEEEe---CCEEEEEECCCCCEEEEEEecC-CCCcEEEEEECCC--CCEEEEEEC----CCeEEEEEcCCCcEEE
Confidence            4566655443   4689999999998765433221 2334556777774  555444322    4578899988774221


Q ss_pred             cccCCCCCceeeeeccCeEEEeCCeEEEEe-cCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEE-eeCCeEEEEEeCCC
Q 036099          179 CKLNLKPPGHILFFVMRSVYSRGGILYSIT-DQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIE-LCKGVLNYANRNES  256 (279)
Q Consensus       179 ~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~-~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~-~~~G~L~~~~~~~~  256 (279)
                      ....   +..    ...++..+ +.+-..+ ....+..+|......... .+....  .....+. ..+|...+....+.
T Consensus       184 ~~~~---h~~----~v~~~s~~-~~~l~sgs~d~~i~~~d~~~~~~~~~-~~~~h~--~~~~~~~~~~~g~~l~s~~~D~  252 (420)
T 4gga_A          184 NMTS---HSA----RVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHHVA-TLSGHS--QEVCGLRWAPDGRHLASGGNDN  252 (420)
T ss_dssp             EECC---CSS----CEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEE-EEECCS--SCEEEEEECTTSSEEEEEETTS
T ss_pred             EEeC---CCC----ceEEEeeC-CCEEEEEeCCCceeEeeecccceeeE-Eecccc--cceeeeeecCCCCeeeeeeccc
Confidence            1111   111    11345566 5544433 577888888776544333 222210  1112222 23567777777777


Q ss_pred             eEEEEEecc
Q 036099          257 KLLIWLFDD  265 (279)
Q Consensus       257 ~~~vW~l~~  265 (279)
                      .+.||....
T Consensus       253 ~v~i~~~~~  261 (420)
T 4gga_A          253 LVNVWPSAP  261 (420)
T ss_dssp             CEEEEESSC
T ss_pred             cceEEeecc
Confidence            788887654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=88.93  E-value=8.3  Score=31.37  Aligned_cols=161  Identities=14%  Similarity=0.107  Sum_probs=75.4

Q ss_pred             eeccCcEEEEeeecCCeeEEEEcCC-CccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCC--C
Q 036099           97 FDSCNGLILLGSSLREHRYYVCNPL-TKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSE--T  173 (279)
Q Consensus        97 ~~s~~Glll~~~~~~~~~~~v~NP~-T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~--~  173 (279)
                      .-+.+|-+++.. .....+.+++.. +++...+.............+.+++.  +.+-++. ...  ...+.+|+..  +
T Consensus       147 ~~spdg~l~v~~-~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spd--g~~l~v~-~~~--~~~v~v~~~~~~~  220 (347)
T 3hfq_A          147 DLTPDNRLAVID-LGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPD--GQYAFLA-GEL--SSQIASLKYDTQT  220 (347)
T ss_dssp             EECTTSCEEEEE-TTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTT--SSEEEEE-ETT--TTEEEEEEEETTT
T ss_pred             EECCCCcEEEEe-CCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCC--CCEEEEE-eCC--CCEEEEEEecCCC
Confidence            334466544333 334567788876 55544332111111112235677774  4443332 222  3345566544  5


Q ss_pred             CCccccccCC-CCCceeeeeccCeE--EEeCCe-EEEEe-cCCeEEEEecCC-CeEEEEecCCCCCCCCCCeeEEe-eCC
Q 036099          174 KTWINCKLNL-KPPGHILFFVMRSV--YSRGGI-LYSIT-DQGTIVCYNIEA-PTEVEIVEVPDENYPYGRGVIEL-CKG  246 (279)
Q Consensus       174 ~~W~~~~~~~-~p~~~~~~~~~~~v--~~~~g~-ly~l~-~~~~i~~fD~~~-~~~~~i~~~P~~~~~~~~~~l~~-~~G  246 (279)
                      ++++...... .|...........+  .-+ |+ ||... ..+.|..||+.. .++..+..+|...  .....+.. -+|
T Consensus       221 g~~~~~~~~~~~~~~~~~~~~~~~i~~spd-G~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~--~~~~~~~~spdg  297 (347)
T 3hfq_A          221 GAFTQLGIVKTIPADYTAHNGAAAIRLSHD-GHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEG--DFPRDFDLDPTE  297 (347)
T ss_dssp             TEEEEEEEEESSCTTCCSCCEEEEEEECTT-SCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSS--SCCCEEEECTTS
T ss_pred             CceEEeeeeeecCCCCCCCCcceeEEECCC-CCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCC--CCcCeEEECCCC
Confidence            6654332211 01110000001112  224 65 66655 468899999863 3455542334311  11122333 366


Q ss_pred             e-EEEEEeCCCeEEEEEeccC
Q 036099          247 V-LNYANRNESKLLIWLFDDR  266 (279)
Q Consensus       247 ~-L~~~~~~~~~~~vW~l~~~  266 (279)
                      + |++.......+.||.++..
T Consensus       298 ~~l~v~~~~~~~v~v~~~d~~  318 (347)
T 3hfq_A          298 AFVVVVNQNTDNATLYARDLT  318 (347)
T ss_dssp             SEEEEEETTTTEEEEEEECTT
T ss_pred             CEEEEEEcCCCcEEEEEEeCC
Confidence            5 5555566689999998743

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=87.73  E-value=11  Score=31.29  Aligned_cols=72  Identities=10%  Similarity=0.083  Sum_probs=40.9

Q ss_pred             CeEEEEe-cCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEee-CCeEEEEEeCCCeEEEEEeccCCCCCcccccc
Q 036099          202 GILYSIT-DQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELC-KGVLNYANRNESKLLIWLFDDRHHNNSHSGSK  276 (279)
Q Consensus       202 g~ly~l~-~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~-~G~L~~~~~~~~~~~vW~l~~~~~~~~w~w~k  276 (279)
                      |.+-..+ ..+.|..+|+.+.+.... -+...  ...-..+.-+ +|++.+....+.++.||.+........=.|+|
T Consensus       281 g~~lasgs~D~~V~iwd~~~~~~~~~-~~~gH--~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~~~s~~~~  354 (365)
T 4h5i_A          281 GELAVLASNDNSIALVKLKDLSMSKI-FKQAH--SFAITEVTISPDSTYVASVSAANTIHIIKLPLNYANYTSMKQK  354 (365)
T ss_dssp             SCEEEEEETTSCEEEEETTTTEEEEE-ETTSS--SSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC-------
T ss_pred             CCceEEEcCCCEEEEEECCCCcEEEE-ecCcc--cCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcCccCcccc
Confidence            6655544 567899999998774332 12211  1111234433 78888888889999999996543333334444

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=87.55  E-value=10  Score=30.83  Aligned_cols=159  Identities=11%  Similarity=0.085  Sum_probs=82.0

Q ss_pred             CcEEEEeeecCCeeEEEEcCCCccccccCCCCc------cCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCC
Q 036099          101 NGLILLGSSLREHRYYVCNPLTKQCVAIPKARE------RVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETK  174 (279)
Q Consensus       101 ~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~------~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~  174 (279)
                      +|.+++........+.++|+.......+.....      .......++.+|+.. +.  ++....  ..-.+.+|+..++
T Consensus       154 ~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~-g~--l~v~d~--~~~~I~~~~~~~G  228 (329)
T 3fvz_A          154 TGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL-DQ--LCVADR--ENGRIQCFKTDTK  228 (329)
T ss_dssp             TCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTT-TE--EEEEET--TTTEEEEEETTTC
T ss_pred             CCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCC-CE--EEEEEC--CCCEEEEEECCCC
Confidence            777777763235678888854333333321110      012234577788753 32  222211  1557899998877


Q ss_pred             CccccccCCC-CCcee-e-eeccCeEEEeCCeEEEEe-cCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEE-eeCCeEE
Q 036099          175 TWINCKLNLK-PPGHI-L-FFVMRSVYSRGGILYSIT-DQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIE-LCKGVLN  249 (279)
Q Consensus       175 ~W~~~~~~~~-p~~~~-~-~~~~~~v~~~~g~ly~l~-~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~-~~~G~L~  249 (279)
                      +....-.... ..... . ......+..+ |.+|... ....|..+|..+.+.... --+..........++ ..+|.|+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~pg~~~~~~-g~~~v~~~~~~~v~~~~~~~g~~~~~-~~~~~~~~~~p~~ia~~~dG~ly  306 (329)
T 3fvz_A          229 EFVREIKHASFGRNVFAISYIPGFLFAVN-GKPYFGDQEPVQGFVMNFSSGEIIDV-FKPVRKHFDMPHDIVASEDGTVY  306 (329)
T ss_dssp             CEEEEECCTTTTTCEEEEEEETTEEEEEE-CCCCTTCSCCCCEEEEETTTCCEEEE-ECCSSSCCSSEEEEEECTTSEEE
T ss_pred             cEEEEEeccccCCCcceeeecCCEEEEeC-CCEEeccCCCcEEEEEEcCCCeEEEE-EcCCCCccCCeeEEEECCCCCEE
Confidence            6533221110 00010 0 0111123334 5544433 345899999888775554 222111111112333 3478999


Q ss_pred             EEEeCCCeEEEEEeccC
Q 036099          250 YANRNESKLLIWLFDDR  266 (279)
Q Consensus       250 ~~~~~~~~~~vW~l~~~  266 (279)
                      ++.....++.+|.++..
T Consensus       307 vad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          307 IGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EEESSSCCEEEEEEEEC
T ss_pred             EEECCCCEEEEEeCCcc
Confidence            99988899999998754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=86.56  E-value=11  Score=30.17  Aligned_cols=146  Identities=11%  Similarity=0.087  Sum_probs=67.3

Q ss_pred             CeeEEEEcCCC-ccccccC--CCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCC--CCCccccccCC-CC
Q 036099          112 EHRYYVCNPLT-KQCVAIP--KARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSE--TKTWINCKLNL-KP  185 (279)
Q Consensus       112 ~~~~~v~NP~T-~~~~~lP--~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~--~~~W~~~~~~~-~p  185 (279)
                      ...+.+++..+ ++...+.  ............+.+++.  +.+-++.- .  ....+.+|+..  ++.++...... .|
T Consensus       150 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd--g~~l~~~~-~--~~~~i~~~~~~~~~g~~~~~~~~~~~~  224 (343)
T 1ri6_A          150 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN--EQYAYCVN-E--LNSSVDVWELKDPHGNIECVQTLDMMP  224 (343)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT--SSEEEEEE-T--TTTEEEEEESSCTTSCCEEEEEEECSC
T ss_pred             CCEEEEEEecCCCceeeecccccccCCCCCcceEEECCC--CCEEEEEe-C--CCCEEEEEEecCCCCcEEEEeeccccC
Confidence            34567777766 5443211  110001112234667774  44433332 1  14467888874  45553322110 01


Q ss_pred             CceeeeeccCeEEEe-CC-eEEEEe-cCCeEEEEecC--CCeEEEEecCCCCCCCCCCeeEEe-eCCeE-EEEEeCCCeE
Q 036099          186 PGHILFFVMRSVYSR-GG-ILYSIT-DQGTIVCYNIE--APTEVEIVEVPDENYPYGRGVIEL-CKGVL-NYANRNESKL  258 (279)
Q Consensus       186 ~~~~~~~~~~~v~~~-~g-~ly~l~-~~~~i~~fD~~--~~~~~~i~~~P~~~~~~~~~~l~~-~~G~L-~~~~~~~~~~  258 (279)
                      ...........+.+. +| .+|... ..+.|..||+.  +.+...+..++....   ...+.. .+|+. ++....+..+
T Consensus       225 ~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~~v  301 (343)
T 1ri6_A          225 ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ---PRGFNVDHSGKYLIAAGQKSHHI  301 (343)
T ss_dssp             TTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS---CCCEEECTTSSEEEEECTTTCEE
T ss_pred             ccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc---cceEEECCCCCEEEEecCCCCeE
Confidence            110000000123332 14 565554 57889999998  555655523333211   112222 35654 4444456889


Q ss_pred             EEEEecc
Q 036099          259 LIWLFDD  265 (279)
Q Consensus       259 ~vW~l~~  265 (279)
                      .||.++.
T Consensus       302 ~v~~~d~  308 (343)
T 1ri6_A          302 SVYEIVG  308 (343)
T ss_dssp             EEEEEET
T ss_pred             EEEEEcC
Confidence            9998764

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=85.89  E-value=13  Score=30.38  Aligned_cols=115  Identities=11%  Similarity=0.079  Sum_probs=59.7

Q ss_pred             cEEEecCCCCCceEEEEEEeccccceEEEEeCCCCCccccccCCC-CCceeeeeccCeEEE--eCCe-EEEEec--CCeE
Q 036099          140 PALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTWINCKLNLK-PPGHILFFVMRSVYS--RGGI-LYSITD--QGTI  213 (279)
Q Consensus       140 ~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~-p~~~~~~~~~~~v~~--~~g~-ly~l~~--~~~i  213 (279)
                      ..+.+++.  +.+-.+. ..  ....+.+|+..++..+....... +....   ....+.+  + |+ ||....  .+.|
T Consensus       214 ~~~~~spd--g~~l~v~-~~--~~~~v~v~~~~~g~~~~~~~~~~~~~~~~---~~~~i~~spd-g~~l~v~~~~~~~~i  284 (361)
T 3scy_A          214 RHLIFNSD--GKFAYLI-NE--IGGTVIAFRYADGMLDEIQTVAADTVNAQ---GSGDIHLSPD-GKYLYASNRLKADGV  284 (361)
T ss_dssp             EEEEECTT--SSEEEEE-ET--TTCEEEEEEEETTEEEEEEEEESCSSCCC---CEEEEEECTT-SSEEEEEECSSSCEE
T ss_pred             eEEEEcCC--CCEEEEE-cC--CCCeEEEEEecCCceEEeEEEecCCCCCC---CcccEEECCC-CCEEEEECCCCCCEE
Confidence            35677775  4443332 21  14467888887776654432210 11000   0012333  4 65 555443  4788


Q ss_pred             EEEecC--CCeEEEEecCCCCCCCCCCeeEEe-eCCe-EEEEEeCCCeEEEEEeccC
Q 036099          214 VCYNIE--APTEVEIVEVPDENYPYGRGVIEL-CKGV-LNYANRNESKLLIWLFDDR  266 (279)
Q Consensus       214 ~~fD~~--~~~~~~i~~~P~~~~~~~~~~l~~-~~G~-L~~~~~~~~~~~vW~l~~~  266 (279)
                      ..||+.  +.++..+..++..   ..-..+.. -+|+ |++.......+.||.++..
T Consensus       285 ~v~~~~~~~g~~~~~~~~~~g---~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~  338 (361)
T 3scy_A          285 AIFKVDETNGTLTKVGYQLTG---IHPRNFIITPNGKYLLVACRDTNVIQIFERDQA  338 (361)
T ss_dssp             EEEEECTTTCCEEEEEEEECS---SCCCEEEECTTSCEEEEEETTTTEEEEEEECTT
T ss_pred             EEEEEcCCCCcEEEeeEecCC---CCCceEEECCCCCEEEEEECCCCCEEEEEEECC
Confidence            998885  5666655334431   11122333 3565 5555556789999988743

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=84.76  E-value=14  Score=29.82  Aligned_cols=136  Identities=13%  Similarity=0.091  Sum_probs=73.9

Q ss_pred             eeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCC---CccccccCCCCCcee
Q 036099          113 HRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETK---TWINCKLNLKPPGHI  189 (279)
Q Consensus       113 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~---~W~~~~~~~~p~~~~  189 (279)
                      ..++++||.+++...+...    .....++.+++.  +.+-.|.  .. ....+.+|+..+.   ..+.....  +.   
T Consensus       165 g~v~~~d~~~~~~~~~~~~----~~~p~gia~~~d--g~~lyv~--d~-~~~~I~~~~~~~~~~~~~~~~~~~--~g---  230 (322)
T 2fp8_A          165 GRLIKYDPSTKETTLLLKE----LHVPGGAEVSAD--SSFVLVA--EF-LSHQIVKYWLEGPKKGTAEVLVKI--PN---  230 (322)
T ss_dssp             EEEEEEETTTTEEEEEEEE----ESCCCEEEECTT--SSEEEEE--EG-GGTEEEEEESSSTTTTCEEEEEEC--SS---
T ss_pred             ceEEEEeCCCCEEEEeccC----CccCcceEECCC--CCEEEEE--eC-CCCeEEEEECCCCcCCccceEEeC--CC---
Confidence            4677888877765443211    122335666664  3322222  11 1346788887653   22221111  11   


Q ss_pred             eeeccCeEEEeC-CeEEEEec-----------CCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCCCe
Q 036099          190 LFFVMRSVYSRG-GILYSITD-----------QGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNESK  257 (279)
Q Consensus       190 ~~~~~~~v~~~~-g~ly~l~~-----------~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~  257 (279)
                          ..++.++. |.+|.-..           ...|..||...+....+ ..|..........+...+|.|++.......
T Consensus       231 ----P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~-~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~  305 (322)
T 2fp8_A          231 ----PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVI-PLPPPFAGEHFEQIQEHDGLLYIGTLFHGS  305 (322)
T ss_dssp             ----EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEE-ECCTTTTTSCCCEEEEETTEEEEECSSCSE
T ss_pred             ----CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEE-ECCCCCccccceEEEEeCCEEEEeecCCCc
Confidence                12344432 77554432           35799999988888888 888642111222334468999999888888


Q ss_pred             EEEEEeccCC
Q 036099          258 LLIWLFDDRH  267 (279)
Q Consensus       258 ~~vW~l~~~~  267 (279)
                      +.+..++..+
T Consensus       306 i~~~~~~~~~  315 (322)
T 2fp8_A          306 VGILVYDKKG  315 (322)
T ss_dssp             EEEEEC----
T ss_pred             eEEEeccccc
Confidence            8888876443

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=83.38  E-value=16  Score=29.60  Aligned_cols=64  Identities=11%  Similarity=0.178  Sum_probs=36.5

Q ss_pred             CeEEEEecCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEee---CCeEEEEEeCCCeEEEEEecc
Q 036099          202 GILYSITDQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELC---KGVLNYANRNESKLLIWLFDD  265 (279)
Q Consensus       202 g~ly~l~~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~---~G~L~~~~~~~~~~~vW~l~~  265 (279)
                      +.+.--+..+.|..+|..+..|..+...........-..+...   +|.+.+....+..+.||.+++
T Consensus       262 ~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          262 GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            4444444678899999988877654222221111011223322   577777778889999998764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=82.65  E-value=16  Score=28.69  Aligned_cols=148  Identities=10%  Similarity=0.063  Sum_probs=77.7

Q ss_pred             ccCcEEEEeeecCCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCCCccc
Q 036099           99 SCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTWIN  178 (279)
Q Consensus        99 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~  178 (279)
                      ..+|.+++.. .....++++|+..+....+....  ......++.+|+.  +.  ++....  ....+.+|+.....-..
T Consensus       129 ~~~g~l~v~~-~~~~~i~~~~~~g~~~~~~~~~~--~~~~p~~i~~~~~--g~--l~v~~~--~~~~i~~~~~~g~~~~~  199 (286)
T 1q7f_A          129 DNKGRIIVVE-CKVMRVIIFDQNGNVLHKFGCSK--HLEFPNGVVVNDK--QE--IFISDN--RAHCVKVFNYEGQYLRQ  199 (286)
T ss_dssp             CTTSCEEEEE-TTTTEEEEECTTSCEEEEEECTT--TCSSEEEEEECSS--SE--EEEEEG--GGTEEEEEETTCCEEEE
T ss_pred             eCCCCEEEEE-CCCCEEEEEcCCCCEEEEeCCCC--ccCCcEEEEECCC--CC--EEEEEC--CCCEEEEEcCCCCEEEE
Confidence            3456555554 23456788887654444433211  1223456777774  33  322221  14467888875432222


Q ss_pred             cccCCCCCceeeeeccCeEEEe-CCeEEEEec-CC-eEEEEecCCCeEEEEecCCCCCCCCCCeeEE-eeCCeEEEEEeC
Q 036099          179 CKLNLKPPGHILFFVMRSVYSR-GGILYSITD-QG-TIVCYNIEAPTEVEIVEVPDENYPYGRGVIE-LCKGVLNYANRN  254 (279)
Q Consensus       179 ~~~~~~p~~~~~~~~~~~v~~~-~g~ly~l~~-~~-~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~-~~~G~L~~~~~~  254 (279)
                      ....   ...   ..-.++.++ +|.+|.... .. .|..||...+....+ ..+...  .....+. ..+|+|++.. .
T Consensus       200 ~~~~---g~~---~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~-~~~~~~--~~~~~i~~~~~g~l~vs~-~  269 (286)
T 1q7f_A          200 IGGE---GIT---NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISAL-ESKVKH--AQCFDVALMDDGSVVLAS-K  269 (286)
T ss_dssp             ESCT---TTS---CSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEE-EESSCC--SCEEEEEEETTTEEEEEE-T
T ss_pred             EccC---Ccc---CCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEE-cccCCC--CcceeEEECCCCcEEEEC-C
Confidence            2110   000   011234442 177777664 33 899999887777666 443211  1112233 3479998885 5


Q ss_pred             CCeEEEEEecc
Q 036099          255 ESKLLIWLFDD  265 (279)
Q Consensus       255 ~~~~~vW~l~~  265 (279)
                      +..+.||.+..
T Consensus       270 ~~~v~v~~~~~  280 (286)
T 1q7f_A          270 DYRLYIYRYVQ  280 (286)
T ss_dssp             TTEEEEEECSC
T ss_pred             CCeEEEEEccc
Confidence            78999998764

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=80.85  E-value=19  Score=28.40  Aligned_cols=147  Identities=10%  Similarity=0.116  Sum_probs=74.7

Q ss_pred             ccCcEEEEeeecCCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCCCccc
Q 036099           99 SCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTWIN  178 (279)
Q Consensus        99 s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~  178 (279)
                      |.+++|-...   ...+.|||..|++...+=.... +......+.+.+.  +.|-+.+ ..   .-.+.+++.++++-..
T Consensus        34 S~~~~lAvg~---D~tV~iWd~~tg~~~~~~~~~~-~~~~V~~v~~~~~--~~~l~sg-s~---Dg~v~iw~~~~~~~~~  103 (318)
T 4ggc_A           34 SSGNVLAVAL---DNSVYLWSASSGDILQLLQMEQ-PGEYISSVAWIKE--GNYLAVG-TS---SAEVQLWDVQQQKRLR  103 (318)
T ss_dssp             CTTSEEEEEE---TTEEEEEETTTCCEEEEEECCS-TTCCEEEEEECTT--SSEEEEE-ET---TSEEEEEETTTTEEEE
T ss_pred             CCCCEEEEEe---CCEEEEEECCCCCEEEEEEecC-CCCeEEEEEECCC--CCEEEEE-EC---CCcEEEeecCCceeEE
Confidence            5577654433   4578999999998665322211 2334456677774  4444333 22   4478889888875221


Q ss_pred             cccCCCCCceeeeeccCeEEEeCCeEEEEe-cCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCCCe
Q 036099          179 CKLNLKPPGHILFFVMRSVYSRGGILYSIT-DQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNESK  257 (279)
Q Consensus       179 ~~~~~~p~~~~~~~~~~~v~~~~g~ly~l~-~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~  257 (279)
                      ....+  . .    .......+ +.+-..+ ..+.+..++..+...... .+... ...........+|.+.+....+..
T Consensus       104 ~~~~h--~-~----~~~~~~~~-~~~l~s~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~l~s~~~d~~  173 (318)
T 4ggc_A          104 NMTSH--S-A----RVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHHVA-TLSGH-SQEVCGLRWAPDGRHLASGGNDNL  173 (318)
T ss_dssp             EEECC--S-S----CEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEE-EEECC-SSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EecCc--c-c----eEEEeecC-CCEEEEEecCCceEeeecCCCceeEE-EEcCc-cCceEEEEEcCCCCEEEEEecCcc
Confidence            11111  0 0    11223344 4332222 455666666655443332 22211 001112222346777777777788


Q ss_pred             EEEEEecc
Q 036099          258 LLIWLFDD  265 (279)
Q Consensus       258 ~~vW~l~~  265 (279)
                      +.||-+..
T Consensus       174 i~iwd~~~  181 (318)
T 4ggc_A          174 VNVWPSAP  181 (318)
T ss_dssp             EEEEESSC
T ss_pred             eeEEECCC
Confidence            88887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	279
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	6e-06

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (95), Expect = 6e-06
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 5  SLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISN 39
          SL ++L+  I   L +  + +   V K W  L S+
Sbjct: 3  SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	279
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.7
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.7
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.4
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	97.94
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.69
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	97.59
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.59
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	88.98
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	84.58

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5.7e-13  Score=74.76  Aligned_cols=39  Identities=26%  Similarity=0.393  Sum_probs=36.4

Q ss_pred             CCCCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCCC
Q 036099            4 ISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCI   42 (279)
Q Consensus         4 ~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F   42 (279)
                      +.||+|++.+||++||++++.|+++|||+|+.++.++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            579999999999999999999999999999999988753

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.70  E-value=2.5e-09  Score=72.46  Aligned_cols=39  Identities=23%  Similarity=0.369  Sum_probs=35.5

Q ss_pred             CCCCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcC-CCC
Q 036099            4 ISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISN-VCI   42 (279)
Q Consensus         4 ~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~-~~F   42 (279)
                      +.||+||+.+||+.|++++|++++.|||+|+.++++ +.+
T Consensus         7 ~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~L   46 (100)
T d1nexb1           7 TSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL   46 (100)
T ss_dssp             HHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHH
T ss_pred             hhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            579999999999999999999999999999999864 554

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.7e-09  Score=71.36  Aligned_cols=42  Identities=19%  Similarity=0.202  Sum_probs=38.8

Q ss_pred             CCCCCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCCCCC
Q 036099            3 QISLSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPR   44 (279)
Q Consensus         3 ~~~LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~   44 (279)
                      ++.||+||+.+||++||+++|+++++|||+|+.++.++.+-+
T Consensus        19 i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~   60 (102)
T d2ovrb1          19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWR   60 (102)
T ss_dssp             TTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHH
T ss_pred             hhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            568999999999999999999999999999999999887654

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=6.4e-08  Score=67.40  Aligned_cols=39  Identities=23%  Similarity=0.331  Sum_probs=35.8

Q ss_pred             CCHHHHHHHHhcCChhhhHHHhhhhHHHHhhhcCCCCCC
Q 036099            6 LSEDLITEILCRLPVKSVTRFKIVSKAWNNLISNVCIPR   44 (279)
Q Consensus         6 LP~Dll~eIL~rLP~~~l~r~r~VcK~W~~li~~~~F~~   44 (279)
                      |+|||+..||+.|++++|.++++|||+|+.+++++.+-+
T Consensus        18 l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk   56 (118)
T d1p22a1          18 GLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWK   56 (118)
T ss_dssp             TCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHH
T ss_pred             ChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHH
Confidence            447999999999999999999999999999999988654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=0.00018  Score=56.76  Aligned_cols=128  Identities=10%  Similarity=0.026  Sum_probs=82.0

Q ss_pred             eeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEe-cc----ccceEEEEeCCCCCccccccCCCCCc
Q 036099          113 HRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVR-AR----MVSEAEIFSSETKTWINCKLNLKPPG  187 (279)
Q Consensus       113 ~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~-~~----~~~~~~vy~s~~~~W~~~~~~~~p~~  187 (279)
                      ..+.++||.|++|..+|+++..+....... .+    +.-.|+.-.. ..    ....+++|+..+++|+.....+.|  
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~-~~----~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~--   91 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VG----GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP--   91 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ET----TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC--
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEE-EC----CEEEEEeCcccCCCCccccchhhhcccccccccccccccce--
Confidence            457799999999999998876433332222 11    2112222111 11    155789999999999988765321  


Q ss_pred             eeeeeccCeEEEeCCeEEEEe------cCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeC
Q 036099          188 HILFFVMRSVYSRGGILYSIT------DQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRN  254 (279)
Q Consensus       188 ~~~~~~~~~v~~~~g~ly~l~------~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~  254 (279)
                         .....++.++ |++|.++      .......+|..+++|... ..+...  .........++++++....
T Consensus        92 ---r~~~~~~~~~-~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--r~~~~~~~~~~~~~~~GG~  157 (288)
T d1zgka1          92 ---RNRIGVGVID-GHIYAVGGSHGCIHHNSVERYEPERDEWHLV-APMLTR--RIGVGVAVLNRLLYAVGGF  157 (288)
T ss_dssp             ---CBTCEEEEET-TEEEEECCEETTEECCCEEEEETTTTEEEEC-CCCSSC--CBSCEEEEETTEEEEECCB
T ss_pred             ---ecceeccccc-eeeEEecceecccccceeeeeccccCccccc-cccccc--cccceeeeeeecceEecCc
Confidence               2334567788 9999987      345678899999999987 433322  2234445567888887654

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.69  E-value=0.00022  Score=58.72  Aligned_cols=174  Identities=10%  Similarity=0.034  Sum_probs=97.7

Q ss_pred             eccCcEEEEeeecCCeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEecc--ccceEEEEeCCCCC
Q 036099           98 DSCNGLILLGSSLREHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRAR--MVSEAEIFSSETKT  175 (279)
Q Consensus        98 ~s~~Glll~~~~~~~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~--~~~~~~vy~s~~~~  175 (279)
                      ...+|.+++..........++||.|++|..+|+++..+......+.  ..  +...|+.-....  ....+++|+..+++
T Consensus        83 ~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~--~d--G~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          83 MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATM--SD--GRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             ECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEEC--TT--SCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeee--cC--CceeeeccccccccccceeeeecCCCCc
Confidence            3457777776644556788999999999999998865444433332  21  333333221111  15578999999999


Q ss_pred             ccccccCCCCCcee------eeeccCeEEE---eCCeEEEEe-cCCeEEEEecCCCeEEEEecCCCCCC----C--CCCe
Q 036099          176 WINCKLNLKPPGHI------LFFVMRSVYS---RGGILYSIT-DQGTIVCYNIEAPTEVEIVEVPDENY----P--YGRG  239 (279)
Q Consensus       176 W~~~~~~~~p~~~~------~~~~~~~v~~---~~g~ly~l~-~~~~i~~fD~~~~~~~~i~~~P~~~~----~--~~~~  239 (279)
                      |...+....+....      .........+   + |.+|..+ ....+..+|..+..|......|....    .  ....
T Consensus       159 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (387)
T d1k3ia3         159 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKK-GSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAV  237 (387)
T ss_dssp             EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGG-GCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEE
T ss_pred             eeecCCCcccccccccccceeeccceeEEEEeCC-CCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEE
Confidence            98776542110000      0001111112   4 6776655 35677889999999988734443211    1  1112


Q ss_pred             eEEeeCCeEEEEEeCC--------CeEEEEEeccCCCCCccccccc
Q 036099          240 VIELCKGVLNYANRNE--------SKLLIWLFDDRHHNNSHSGSKA  277 (279)
Q Consensus       240 ~l~~~~G~L~~~~~~~--------~~~~vW~l~~~~~~~~w~w~k~  277 (279)
                      .+...+|+++++....        ....+..+.... ..++.|+++
T Consensus       238 ~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  282 (387)
T d1k3ia3         238 MYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG-TSPNTVFAS  282 (387)
T ss_dssp             EEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTT-SCCEEEECT
T ss_pred             EeeccCCceEEEEeccCCCCCcccceeecccccccc-cCCCceeec
Confidence            3344578988888632        233344444333 345666654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00091  Score=52.46  Aligned_cols=127  Identities=13%  Similarity=0.097  Sum_probs=82.3

Q ss_pred             CeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEec-c--ccceEEEEeCCCCCccccccCCCCCce
Q 036099          112 EHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRA-R--MVSEAEIFSSETKTWINCKLNLKPPGH  188 (279)
Q Consensus       112 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~-~--~~~~~~vy~s~~~~W~~~~~~~~p~~~  188 (279)
                      ...+.++||.|.+|..+|+++..+....... ++    +  |++.+... +  .....++|+..++.|...+...  .. 
T Consensus        69 ~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~-~~----~--~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-  138 (288)
T d1zgka1          69 SSALDCYNPMTNQWSPCAPMSVPRNRIGVGV-ID----G--HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML--TR-  138 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBTCEEEE-ET----T--EEEEECCEETTEECCCEEEEETTTTEEEECCCCS--SC-
T ss_pred             cchhhhcccccccccccccccceecceeccc-cc----e--eeEEecceecccccceeeeeccccCccccccccc--cc-
Confidence            3568899999999999998876443333322 22    2  22222211 1  1556889999999998776542  11 


Q ss_pred             eeeeccCeEEEeCCeEEEEe------cCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeC
Q 036099          189 ILFFVMRSVYSRGGILYSIT------DQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRN  254 (279)
Q Consensus       189 ~~~~~~~~v~~~~g~ly~l~------~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~  254 (279)
                        ......+..+ +.+|.++      ....+..||+.+++|... ..+...  .........+++++++...
T Consensus       139 --r~~~~~~~~~-~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~i~GG~  204 (288)
T d1zgka1         139 --RIGVGVAVLN-RLLYAVGGFDGTNRLNSAECYYPERNEWRMI-TAMNTI--RSGAGVCVLHNCIYAAGGY  204 (288)
T ss_dssp             --CBSCEEEEET-TEEEEECCBCSSCBCCCEEEEETTTTEEEEC-CCCSSC--CBSCEEEEETTEEEEECCB
T ss_pred             --cccceeeeee-ecceEecCcccccccceEEEeeccccccccc-cccccc--cccccccceeeeEEEecCc
Confidence              1233456667 8888877      356789999999999998 554432  2234455568888888754

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.59  E-value=0.00019  Score=59.15  Aligned_cols=124  Identities=10%  Similarity=0.077  Sum_probs=74.6

Q ss_pred             cCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEecc---------ccceEEEEeCCCCCccccccCCCCCcee
Q 036099          119 NPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRAR---------MVSEAEIFSSETKTWINCKLNLKPPGHI  189 (279)
Q Consensus       119 NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~---------~~~~~~vy~s~~~~W~~~~~~~~p~~~~  189 (279)
                      .|.+++|...++.+..    .......+.. +  ||+.+.-..         ....+++|+..+++|........|  +.
T Consensus         5 ~p~~g~W~~~~~~p~~----~~~~a~~~~~-g--kv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~--~~   75 (387)
T d1k3ia3           5 QPGLGRWGPTIDLPIV----PAAAAIEPTS-G--RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK--HD   75 (387)
T ss_dssp             CTTSCEEEEEEECSSC----CSEEEEETTT-T--EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS--CC
T ss_pred             CCCCCccCCcCCCCcc----ccEEEEEeeC-C--EEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCC--cc
Confidence            4889999887766542    1122222332 3  444443221         144588999999999876543222  11


Q ss_pred             eeeccCeEEEeCCeEEEEe--cCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeC
Q 036099          190 LFFVMRSVYSRGGILYSIT--DQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRN  254 (279)
Q Consensus       190 ~~~~~~~v~~~~g~ly~l~--~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~  254 (279)
                      .......+..+ |++|+.+  ....+-.||+.+++|+.+..+|..  ..........+|+++++...
T Consensus        76 ~~~~~~~~~~~-g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~--r~~~~~~~~~dG~v~v~GG~  139 (387)
T d1k3ia3          76 MFCPGISMDGN-GQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA--RGYQSSATMSDGRVFTIGGS  139 (387)
T ss_dssp             CSSCEEEECTT-SCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC--CSSCEEEECTTSCEEEECCC
T ss_pred             cceeEEEEecC-CcEEEeecCCCcceeEecCccCccccccccccc--ccccceeeecCCceeeeccc
Confidence            11111233446 9999988  456889999999999988444432  22233444458999998864

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.98  E-value=2.3  Score=31.69  Aligned_cols=138  Identities=8%  Similarity=0.086  Sum_probs=66.7

Q ss_pred             CeeEEEEcCCCccccccCCCCccCCCcccEEEecCCCCCceEEEEEEeccccceEEEEeCCCCCccccccCCCCCceeee
Q 036099          112 EHRYYVCNPLTKQCVAIPKARERVLESAPALAFDPRDSSHYKIIRFVRARMVSEAEIFSSETKTWINCKLNLKPPGHILF  191 (279)
Q Consensus       112 ~~~~~v~NP~T~~~~~lP~~~~~~~~~~~~lg~d~~~~~~ykvv~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~  191 (279)
                      ...+.++|..+++...+....  +......+.+++.  +.|-+.+ ..   .-.+.+|+..++.........  ..+.. 
T Consensus       157 dg~i~~~d~~~~~~~~~~~~~--~~~~i~~~~~~~~--~~~l~~~-~~---d~~i~~~~~~~~~~~~~~~~~--~~h~~-  225 (299)
T d1nr0a2         157 DSKVHVYKLSGASVSEVKTIV--HPAEITSVAFSNN--GAFLVAT-DQ---SRKVIPYSVANNFELAHTNSW--TFHTA-  225 (299)
T ss_dssp             TSEEEEEEEETTEEEEEEEEE--CSSCEEEEEECTT--SSEEEEE-ET---TSCEEEEEGGGTTEESCCCCC--CCCSS-
T ss_pred             ccccccccccccccccccccc--ccccccccccccc--ccccccc-cc---ccccccccccccccccccccc--ccccc-
Confidence            345667776666544332221  1223344556663  4443322 22   346788887776543222111  01100 


Q ss_pred             eccCeEEE--eCCeEEEEe-cCCeEEEEecCCCeEEEEecCCCCCCCCCCeeEEeeCCeEEEEEeCCCeEEEEEe
Q 036099          192 FVMRSVYS--RGGILYSIT-DQGTIVCYNIEAPTEVEIVEVPDENYPYGRGVIELCKGVLNYANRNESKLLIWLF  263 (279)
Q Consensus       192 ~~~~~v~~--~~g~ly~l~-~~~~i~~fD~~~~~~~~i~~~P~~~~~~~~~~l~~~~G~L~~~~~~~~~~~vW~l  263 (279)
                       .-.++.+  + |.+...+ ..+.|..+|+.+.+...+ ..........-..+...+|+..+....+..+.||-+
T Consensus       226 -~v~~l~~s~~-~~~l~sgs~dg~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         226 -KVACVSWSPD-NVRLATGSLDNSVIVWNMNKPSDHPI-IIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             -CEEEEEECTT-SSEEEEEETTSCEEEEETTCTTSCCE-EETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             -cccccccccc-ccceEEEcCCCEEEEEECCCCCcceE-EEecCCCCCcEEEEEECCCCEEEEEeCCCEEEEEec
Confidence             0011222  3 5444433 568899999887653332 111111111112233345666666777899999976

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=84.58  E-value=2.6  Score=32.20  Aligned_cols=17  Identities=0%  Similarity=-0.148  Sum_probs=9.2

Q ss_pred             CCeEEEEecCCCeEEEE
Q 036099          210 QGTIVCYNIEAPTEVEI  226 (279)
Q Consensus       210 ~~~i~~fD~~~~~~~~i  226 (279)
                      ...|+.||+.+.+++.+
T Consensus        77 ~~gl~~~d~~tg~~~~l   93 (295)
T d2ghsa1          77 DDGLFLRDTATGVLTLH   93 (295)
T ss_dssp             TTEEEEEETTTCCEEEE
T ss_pred             eCccEEeecccceeeEE
Confidence            34555555555555554