Citrus Sinensis ID: 036145

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
MASSNRNWPSMFKSKPYNTHHHQWQQRDVNSSSLMSNGNHRPSYTTVPGCEERSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQNSKQQQSQQTNQMITSVATTITAPSSSSSSSEKSSPTTGSIKRLSLSSPNVIDVSNSPTGSVNQTCFQTHNEFLTEPFFLPIQQTGEGGQGFGFSELPNVVQVNQQQLIGPCTSLLLSEIMNHGATKKEQEDTIWKIQPQQLSNYAATTVPSILSIAPPPLPTTTVTVPSTINPIQGAGVEESDPVVGHGGAARSTVFINDVAFEVVAGPFNVREAFGEDAVLINSSGQPVLTNEWGVTLQSLNHGAFYYL
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEcccccHHHHHccccEEEEEcccccEEccccccccccccccccccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHcHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccEEEEcccccccccccEEEccccccccccccccccccEEEEcccccccccHHHHHHHHHcccccHHHHHHHHHHHcccHHccccccccccccccccccccccEEEccccccccccccccccccccccccccEEEEEEccEcEEEccccccHHHHHcccEEEEEcccccccccccEEEEcccccccEEcc
massnrnwpsmfkskpynthhhqwqqrdvnssslmsngnhrpsyttvpgceerspepkprwnpkpeqIRILESIFnsgmvnpprDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQNSKQQQSQQTNQMITSVATtitapssssssseksspttgsikrlslsspnvidvsnsptgsvnqtcfqthnefltepfflpiqqtgeggqgfgfselpnvVQVNqqqligpcTSLLLSEImnhgatkkeqEDTIWkiqpqqlsnyaattvpsilsiappplptttvtvpstinpiqgagveesdpvvghggaarstVFINDVAFevvagpfnvreafgedavlinssgqpvltnewgvtlqslnhgafyyl
massnrnwpsmFKSKPYNTHHHQWQQRDVNSSSLMSNGNHRPsyttvpgceerspepkprwnpkpEQIRILESIfnsgmvnppRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQnskqqqsqqTNQMITSVATTitapssssssseksspttgsikrlslsspnvIDVSNSPTGSVNQTCFQTHNEFLTEPFFLPIQQTGEGGQGFGFSELPNVVQVNQQQLIGPCTSLLLSEIMNHGATKKEQEDTIWKIQPQQLSNYAATTVPSILSIAPPPLPTTTVTVPSTINPIQGAGVEESDPVVGHGGAARSTVFINDVAFEVVAGPFNVREAFGEDAVLINSSGQPVLTNEWGVTLQSLNHGAFYYL
MASSNRNWPSMFKSKPYNTHHHQWQQRDVNSSSLMSNGNHRPSYTTVPGCEERSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIqnskqqqsqqtnqMItsvattitapssssssseksspttgsIKRLSLSSPNVIDVSNSPTGSVNQTCFQTHNEFLTEPFFLPIqqtgeggqgfgfSELPnvvqvnqqqLIGPCTSLLLSEIMNHGATKKEQEDTIWKIQPQQLSNYAATTVpsilsiappplptttvtvpstINPIQGAGVEESDPVVGHGGAARSTVFINDVAFEVVAGPFNVREAFGEDAVLINSSGQPVLTNEWGVTLQSLNHGAFYYL
********************************************************************RILESIFNSGMV*****EIRRIRAQLQEYGQVGDANVFYWFQ****************************************************************************NQTCFQTHNEFLTEPFFLPIQQTGEGGQGFGFSELPNVVQVNQQQLIGPCTSLLLSEIMNHGATK**QEDTIWKIQPQQLSNYAATTVPSILSIAPPPLPTTTVTVPSTINPIQGAGV****PVVGHGGAARSTVFINDVAFEVVAGPFNVREAFGEDAVLINSSGQPVLTNEWGVTLQSLNHGAFYY*
***************************************************************KPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNR************************************************************************************************************************************************************************************************************ARSTVFINDVAFEVVAGPFNVREAFGEDAVLINSSGQPVLTNEWGVTLQSLNHGAFYYL
********PSMFKSKP**************SSSLMSNGNHRPS*******************PKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRK************************ITSVAT**********************KRLSLSSPNVIDVSNSPTGSVNQTCFQTHNEFLTEPFFLPIQQTGEGGQGFGFSELPNVVQVNQQQLIGPCTSLLLSEIMNHG********TIWKIQPQQLSNYAATTVPSILSIAPPPLPTTTVTVPSTINPIQGAGVEESDPVVGHGGAARSTVFINDVAFEVVAGPFNVREAFGEDAVLINSSGQPVLTNEWGVTLQSLNHGAFYYL
****************************************RP***************KPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK*R**********************************************LSLSSPNVIDVSNSPTGSVNQTCFQTHNEFLTEPFFLPIQQTGEGGQGFGFSELPNVVQVNQQQLIGPCTSLLLSEIMNHGATKKEQEDTIWKIQPQQLSNYAATTVPSILSIAPPPLPTTTVTVPSTINPIQGAGVEESDPVVGHGGAARSTVFINDVAFEVVAGPFNVREAFGEDAVLINSSGQPVLTNEWGVTLQSLNHGAFYYL
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MASSNRNWPSMFKSKPYNTHHHQWQQRDVNSSSLMSNGNHRPSYTTVPGCEERSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQNSKQQQSQQTNQMITSVATTITAPSSSSSSSEKSSPTTGSIKRLSLSSPNVIDVSNSPTGSVNQTCFQTHNEFLTEPFFLPIQQTGEGGQGFGFSELPNVVQVNQQQLIGPCTSLLLSEIMNHGATKKEQEDTIWKIQPQQLSNYAATTVPSILSIAPPPLPTTTVTVPSTINPIQGAGVEESDPVVGHGGAARSTVFINDVAFEVVAGPFNVREAFGEDAVLINSSGQPVLTNEWGVTLQSLNHGAFYYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query375 2.2.26 [Sep-21-2011]
Q6X7J4378 WUSCHEL-related homeobox yes no 0.901 0.894 0.461 4e-70
Q6X7J5325 WUSCHEL-related homeobox no no 0.834 0.963 0.419 9e-63
A3B6V0 515 WUSCHEL-related homeobox yes no 0.314 0.229 0.641 9e-42
Q0JKK6 533 WUSCHEL-related homeobox yes no 0.306 0.215 0.625 4e-37
A3BKM2306 WUSCHEL-related homeobox yes no 0.189 0.232 0.887 4e-32
Q0D3I7262 WUSCHEL-related homeobox yes no 0.192 0.274 0.6 1e-19
Q8GY25268 WUSCHEL-related homeobox no no 0.154 0.216 0.728 3e-19
Q6X7J3268 WUSCHEL-related homeobox no no 0.154 0.216 0.711 5e-19
A2XG77328 WUSCHEL-related homeobox N/A no 0.144 0.164 0.759 7e-19
Q10M29328 WUSCHEL-related homeobox no no 0.144 0.164 0.759 8e-19
>sp|Q6X7J4|WOX9_ARATH WUSCHEL-related homeobox 9 OS=Arabidopsis thaliana GN=WOX9 PE=2 SV=1 Back     alignment and function desciption
 Score =  265 bits (678), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 191/414 (46%), Positives = 240/414 (57%), Gaps = 76/414 (18%)

Query: 1   MASSNRNWPSMFKSKPYNTHHHQWQQRDVNSSSLMSNGNHRPSYTTVPGCE-ERSPEPKP 59
           MASSNR+WPSMFKSKP   H HQWQ  D+NS  L+ + +HR S  +  GCE ERSPEPKP
Sbjct: 1   MASSNRHWPSMFKSKP---HPHQWQH-DINSP-LLPSASHRSSPFS-SGCEVERSPEPKP 54

Query: 60  RWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119
           RWNPKPEQIRILE+IFNSGMVNPPR+EIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK
Sbjct: 55  RWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 114

Query: 120 LRHIQNSKQQQSQQTNQMITSVATTITAPSSSSSSSEKSSPTTGSIK---RLSLSSPNVI 176
           LR + N  +    QT        +  ++ SSSSSSS+ + P     K    LSL    ++
Sbjct: 115 LRLLHNHSKHSLPQTQPQPQPQPSASSSSSSSSSSSKSTKPRKSKNKNNTNLSLGGSQMM 174

Query: 177 DVSNSPTGSVNQTCFQTHNEFLTEPFFL-PIQQTGEGGQGFGFSELPNVV---QVNQQQL 232
            +                  F  EP FL P+   G G +G   S     +    + QQ+ 
Sbjct: 175 GM------------------FPPEPAFLFPVSTVG-GFEGITVSSQLGFLSGDMIEQQKP 215

Query: 233 IGPCTSLLLSEIMN----------HGATKKEQEDTIWKI--QPQ----------QLSNYA 270
              CT LLLSEIMN             ++KE E+   K+  QPQ          Q+++Y 
Sbjct: 216 APTCTGLLLSEIMNGSVSYGTHHQQHLSEKEVEEMRMKMLQQPQTQICYATTNHQIASYN 275

Query: 271 ATTVPSILSIAPPPLPT---------TTVTVPSTINPIQGAGVEESDPVVGHGGAARSTV 321
                + + +  PP  +         +  TVPST + +Q     ++D        AR  V
Sbjct: 276 NNNNNNNIMLHIPPTTSTATTITTSHSLATVPSTSDQLQ----VQAD--------ARIRV 323

Query: 322 FINDVAFEVVAGPFNVREAFGEDAVLINSSGQPVLTNEWGVTLQSLNHGAFYYL 375
           FIN++  EV +GPFNVR+AFGE+ VLINS+GQP++T+E+GV L  L HGA YYL
Sbjct: 324 FINEMELEVSSGPFNVRDAFGEEVVLINSAGQPIVTDEYGVALHPLQHGASYYL 377
Transcription factor which may be involved in developmental processes.
Arabidopsis thaliana (taxid: 3702)
>sp|Q6X7J5|WOX8_ARATH WUSCHEL-related homeobox 8 OS=Arabidopsis thaliana GN=WOX8 PE=2 SV=1 Back     alignment and function description
>sp|A3B6V0|WOX12_ORYSJ WUSCHEL-related homeobox 12 OS=Oryza sativa subsp. japonica GN=WOX12 PE=2 SV=2 Back     alignment and function description
>sp|Q0JKK6|WOX7_ORYSJ WUSCHEL-related homeobox 7 OS=Oryza sativa subsp. japonica GN=WOX7 PE=2 SV=2 Back     alignment and function description
>sp|A3BKM2|WOX13_ORYSJ WUSCHEL-related homeobox 13 OS=Oryza sativa subsp. japonica GN=WOX13 PE=2 SV=1 Back     alignment and function description
>sp|Q0D3I7|WOX11_ORYSJ WUSCHEL-related homeobox 11 OS=Oryza sativa subsp. japonica GN=WOX11 PE=2 SV=1 Back     alignment and function description
>sp|Q8GY25|WOX12_ARATH WUSCHEL-related homeobox 12 OS=Arabidopsis thaliana GN=WOX12 PE=2 SV=1 Back     alignment and function description
>sp|Q6X7J3|WOX11_ARATH WUSCHEL-related homeobox 11 OS=Arabidopsis thaliana GN=WOX11 PE=2 SV=2 Back     alignment and function description
>sp|A2XG77|WOX6_ORYSI WUSCHEL-related homeobox 6 OS=Oryza sativa subsp. indica GN=WOX6 PE=2 SV=1 Back     alignment and function description
>sp|Q10M29|WOX6_ORYSJ WUSCHEL-related homeobox 6 OS=Oryza sativa subsp. japonica GN=WOX6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
224116368367 predicted protein [Populus trichocarpa] 0.952 0.972 0.666 1e-125
224077030390 predicted protein [Populus trichocarpa] 0.962 0.925 0.642 1e-116
297740453464 unnamed protein product [Vitis vinifera] 0.952 0.769 0.637 1e-114
225443552379 PREDICTED: WUSCHEL-related homeobox 9-li 0.952 0.941 0.637 1e-113
255563018390 hypothetical protein RCOM_1012260 [Ricin 0.954 0.917 0.620 1e-113
218764874393 WOX9-like protein [Phaseolus coccineus] 0.968 0.923 0.606 1e-109
356548399399 PREDICTED: WUSCHEL-related homeobox 9-li 0.952 0.894 0.555 3e-97
357446821457 WUSCHEL-related homeobox [Medicago trunc 0.938 0.770 0.546 3e-95
356546191389 PREDICTED: WUSCHEL-related homeobox 8-li 0.957 0.922 0.539 4e-95
449433782376 PREDICTED: WUSCHEL-related homeobox 9-li 0.944 0.941 0.563 1e-92
>gi|224116368|ref|XP_002331965.1| predicted protein [Populus trichocarpa] gi|222874742|gb|EEF11873.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 256/384 (66%), Positives = 290/384 (75%), Gaps = 27/384 (7%)

Query: 1   MASSNRNWPSMFKSKPYNTHHHQWQQRDVNSSSLMSNGNHRPSYTTVPGCEERSPEPKPR 60
           MASSNR+WPS+FKSKP N HHHQWQ  D+N SSLMS G HR  Y +VPGCEERSPEPKPR
Sbjct: 1   MASSNRHWPSLFKSKPCNPHHHQWQH-DINPSSLMSTGCHRNPYASVPGCEERSPEPKPR 59

Query: 61  WNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKL 120
           WNPKPEQIRILE+IFNSGMVNPPRDEIR+IRAQLQEYGQVGDANVFYWFQNRKSRSKHKL
Sbjct: 60  WNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKL 119

Query: 121 RHIQNSKQQQSQQTNQMITSVATTITAPSSSSSSSEKSSPTTGSIKRLSLSSPNVIDVSN 180
           R++QNSKQQ +  T + +T+   ++TAPSS SSSSEKSS    S + LSLSSP  ID SN
Sbjct: 120 RNLQNSKQQITPSTTKPVTA---SLTAPSSLSSSSEKSS-PKVSKRTLSLSSPPFIDASN 175

Query: 181 SPTGSVNQTCFQTHNEFLTEPFFLPIQQTG----EGGQGFGFSELPNVVQVNQQQLIGPC 236
           SP  SV+QT FQ  NEF++EPFF P+QQTG       QGF FSEL NVV V Q   +GPC
Sbjct: 176 SPNSSVSQTYFQAQNEFVSEPFFFPVQQTGGETVAFTQGFCFSELSNVVHV-QDHTVGPC 234

Query: 237 TSLLLSEIMNHGATKK-EQEDTIWKIQPQQLSNYAATTVPSILSIAPPPLP----TTTVT 291
            SLLLSEI N  A+KK   E+   K+QP QLS  A + V   + +A PPLP    T+TV+
Sbjct: 235 PSLLLSEITNSSASKKANHEERNLKMQP-QLSYTATSPVTHSIDLA-PPLPLSANTSTVS 292

Query: 292 VPSTINPIQGAGVEESDPVVGHGGAARSTVFINDVAFEVVAGPFNVREAFGEDAVLINSS 351
           + STI+ IQG            GG  RSTVFINDVAFEV  GPFNVREAFG+D +LI+SS
Sbjct: 293 IQSTISQIQGVS----------GGNERSTVFINDVAFEVAMGPFNVREAFGDDILLIHSS 342

Query: 352 GQPVLTNEWGVTLQSLNHGAFYYL 375
           GQPVLTNEWG+TL SL HGA YYL
Sbjct: 343 GQPVLTNEWGITLDSLQHGALYYL 366

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224077030|ref|XP_002305099.1| predicted protein [Populus trichocarpa] gi|222848063|gb|EEE85610.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297740453|emb|CBI30635.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225443552|ref|XP_002273188.1| PREDICTED: WUSCHEL-related homeobox 9-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255563018|ref|XP_002522513.1| hypothetical protein RCOM_1012260 [Ricinus communis] gi|223538204|gb|EEF39813.1| hypothetical protein RCOM_1012260 [Ricinus communis] Back     alignment and taxonomy information
>gi|218764874|gb|ACL11801.1| WOX9-like protein [Phaseolus coccineus] Back     alignment and taxonomy information
>gi|356548399|ref|XP_003542589.1| PREDICTED: WUSCHEL-related homeobox 9-like [Glycine max] Back     alignment and taxonomy information
>gi|357446821|ref|XP_003593686.1| WUSCHEL-related homeobox [Medicago truncatula] gi|355482734|gb|AES63937.1| WUSCHEL-related homeobox [Medicago truncatula] Back     alignment and taxonomy information
>gi|356546191|ref|XP_003541514.1| PREDICTED: WUSCHEL-related homeobox 8-like [Glycine max] Back     alignment and taxonomy information
>gi|449433782|ref|XP_004134676.1| PREDICTED: WUSCHEL-related homeobox 9-like [Cucumis sativus] gi|449479259|ref|XP_004155551.1| PREDICTED: WUSCHEL-related homeobox 9-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query375
TAIR|locus:2057614378 HB-3 "homeobox-3" [Arabidopsis 0.306 0.304 0.803 1.1e-71
TAIR|locus:2161353325 WOX8 "AT5G45980" [Arabidopsis 0.309 0.356 0.677 1.4e-60
TAIR|locus:2175941268 WOX12 "AT5G17810" [Arabidopsis 0.186 0.261 0.676 1.9e-35
TAIR|locus:2096429297 WOX11 "AT3G03660" [Arabidopsis 0.186 0.235 0.661 3.1e-35
TAIR|locus:2161388122 AT5G46010 [Arabidopsis thalian 0.296 0.909 0.380 3.1e-14
UNIPROTKB|Q33DK1203 WOX3 "WUSCHEL-related homeobox 0.173 0.320 0.492 2.1e-13
TAIR|locus:2074638182 WOX5 "WUSCHEL related homeobox 0.170 0.351 0.468 2.7e-13
TAIR|locus:2166434122 WOX7 "AT5G05770" [Arabidopsis 0.170 0.524 0.453 3.5e-13
TAIR|locus:2060902292 WUS "AT2G17950" [Arabidopsis t 0.256 0.328 0.373 5.1e-13
TAIR|locus:2088550350 WOX1 "WUSCHEL related homeobox 0.165 0.177 0.5 1.3e-12
TAIR|locus:2057614 HB-3 "homeobox-3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 496 (179.7 bits), Expect = 1.1e-71, Sum P(3) = 1.1e-71
 Identities = 98/122 (80%), Positives = 106/122 (86%)

Query:     1 MASSNRNWPSMFKSKPYNTHHHQWQQRDVNSSSLMSNGNHRPSYTTVPGCE-ERSPEPKP 59
             MASSNR+WPSMFKSKP   H HQWQ  D+NS  L+ + +HR S  +  GCE ERSPEPKP
Sbjct:     1 MASSNRHWPSMFKSKP---HPHQWQH-DINSP-LLPSASHRSSPFS-SGCEVERSPEPKP 54

Query:    60 RWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 119
             RWNPKPEQIRILE+IFNSGMVNPPR+EIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK
Sbjct:    55 RWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 114

Query:   120 LR 121
             LR
Sbjct:   115 LR 116
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IEA
GO:0008284 "positive regulation of cell proliferation" evidence=IMP
GO:0010075 "regulation of meristem growth" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP
GO:0009735 "response to cytokinin stimulus" evidence=IGI
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010093 "specification of floral organ identity" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0048440 "carpel development" evidence=RCA
GO:0048507 "meristem development" evidence=RCA
TAIR|locus:2161353 WOX8 "AT5G45980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175941 WOX12 "AT5G17810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096429 WOX11 "AT3G03660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161388 AT5G46010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q33DK1 WOX3 "WUSCHEL-related homeobox 3" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2074638 WOX5 "WUSCHEL related homeobox 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166434 WOX7 "AT5G05770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2060902 WUS "AT2G17950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088550 WOX1 "WUSCHEL related homeobox 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6X7J4WOX9_ARATHNo assigned EC number0.46130.90130.8941yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
pfam0004657 pfam00046, Homeobox, Homeobox domain 3e-12
smart0038957 smart00389, HOX, Homeodomain 3e-08
cd0008659 cd00086, homeodomain, Homeodomain; DNA binding dom 1e-07
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain Back     alignment and domain information 
 Score = 60.6 bits (148), Expect = 3e-12
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 58  KPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSK 117
           + R    PEQ+  LE  F      P  +E   +  +L     + +  V  WFQNR+++ K
Sbjct: 2   RKRTTFTPEQLEELEKEFEKNR-YPSAEEREELAKKLG----LTERQVKVWFQNRRAKWK 56

Query: 118 H 118
            
Sbjct: 57  R 57

Length = 57
>gnl|CDD|197696 smart00389, HOX, Homeodomain Back     alignment and domain information
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 375
KOG0487308 consensus Transcription factor Abd-B, contains HOX 99.79
KOG0489261 consensus Transcription factor zerknullt and relat 99.78
KOG0484125 consensus Transcription factor PHOX2/ARIX, contain 99.76
KOG0492246 consensus Transcription factor MSH, contains HOX d 99.76
KOG0488309 consensus Transcription factor BarH and related HO 99.73
KOG0843197 consensus Transcription factor EMX1 and related HO 99.71
KOG0842307 consensus Transcription factor tinman/NKX2-3, cont 99.71
PF0004657 Homeobox: Homeobox domain not present here.; Inter 99.68
KOG2251228 consensus Homeobox transcription factor [Transcrip 99.68
KOG0494332 consensus Transcription factor CHX10 and related H 99.62
KOG0850245 consensus Transcription factor DLX and related pro 99.59
smart0038956 HOX Homeodomain. DNA-binding factors that are invo 99.58
KOG0848317 consensus Transcription factor Caudal, contains HO 99.58
cd0008659 homeodomain Homeodomain; DNA binding domains invol 99.57
KOG0493342 consensus Transcription factor Engrailed, contains 99.53
KOG0485268 consensus Transcription factor NKX-5.1/HMX1, conta 99.53
KOG0844408 consensus Transcription factor EVX1, contains HOX 99.52
COG5576156 Homeodomain-containing transcription factor [Trans 99.52
TIGR0156558 homeo_ZF_HD homeobox domain, ZF-HD class. This mod 99.51
KOG0486351 consensus Transcription factor PTX1, contains HOX 99.47
KOG0483198 consensus Transcription factor HEX, contains HOX a 99.46
KOG0491194 consensus Transcription factor BSH, contains HOX d 99.42
KOG3802398 consensus Transcription factor OCT-1, contains POU 99.4
KOG4577383 consensus Transcription factor LIM3, contains LIM 99.38
KOG0490235 consensus Transcription factor, contains HOX domai 99.37
KOG0849354 consensus Transcription factor PRD and related pro 99.18
KOG0847288 consensus Transcription factor, contains HOX domai 99.13
KOG1168385 consensus Transcription factor ACJ6/BRN-3, contain 98.85
KOG0775304 consensus Transcription factor SIX and related HOX 98.51
KOG0490235 consensus Transcription factor, contains HOX domai 98.3
KOG2252558 consensus CCAAT displacement protein and related h 98.19
KOG0774334 consensus Transcription factor PBX and related HOX 98.07
PF0592040 Homeobox_KN: Homeobox KN domain; InterPro: IPR0084 97.64
KOG1146 1406 consensus Homeobox protein [General function predi 97.45
KOG0773342 consensus Transcription factor MEIS1 and related H 94.64
KOG3623 1007 consensus Homeobox transcription factor SIP1 [Tran 94.14
PF1156956 Homez: Homeodomain leucine-zipper encoding, Homez; 90.16
PF0421853 CENP-B_N: CENP-B N-terminal DNA-binding domain; In 86.54
PF00577 552 Usher: Outer membrane usher protein; InterPro: IPR 81.35
PF0496753 HTH_10: HTH DNA binding domain; InterPro: IPR00705 80.18
>KOG0487 consensus Transcription factor Abd-B, contains HOX domain [Transcription] Back     alignment and domain information 
Probab=99.79  E-value=4.3e-20  Score=179.97  Aligned_cols=66  Identities=24%  Similarity=0.280  Sum_probs=61.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhhH
Q 036145           54 SPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQ  124 (375)
Q Consensus        54 sp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~q  124 (375)
                      +..||+|+.+|+.|+.+||++|..|+ |+++++|.+|++.|+    |+|+||||||||||+|+||--|+..
T Consensus       233 ~~~RKKRcPYTK~QtlELEkEFlfN~-YitkeKR~ElSr~lN----LTeRQVKIWFQNRRMK~KK~~re~r  298 (308)
T KOG0487|consen  233 RRGRKKRCPYTKHQTLELEKEFLFNM-YITKEKRLELSRTLN----LTERQVKIWFQNRRMKEKKVNRENR  298 (308)
T ss_pred             cccccccCCchHHHHHHHHHHHHHHH-HHhHHHHHHHHHhcc----cchhheeeeehhhhhHHhhhhhhhh
Confidence            45689999999999999999999997 999999999999997    9999999999999999999876443

>KOG0489 consensus Transcription factor zerknullt and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0484 consensus Transcription factor PHOX2/ARIX, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0492 consensus Transcription factor MSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0488 consensus Transcription factor BarH and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0842 consensus Transcription factor tinman/NKX2-3, contains HOX domain [Transcription] Back     alignment and domain information
>PF00046 Homeobox: Homeobox domain not present here Back     alignment and domain information
>KOG2251 consensus Homeobox transcription factor [Transcription] Back     alignment and domain information
>KOG0494 consensus Transcription factor CHX10 and related HOX domain proteins [General function prediction only] Back     alignment and domain information
>KOG0850 consensus Transcription factor DLX and related proteins with LIM Zn-binding and HOX domains [Transcription] Back     alignment and domain information
>smart00389 HOX Homeodomain Back     alignment and domain information
>KOG0848 consensus Transcription factor Caudal, contains HOX domain [Transcription] Back     alignment and domain information
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner Back     alignment and domain information
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0485 consensus Transcription factor NKX-5 Back     alignment and domain information
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription] Back     alignment and domain information
>COG5576 Homeodomain-containing transcription factor [Transcription] Back     alignment and domain information
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class Back     alignment and domain information
>KOG0486 consensus Transcription factor PTX1, contains HOX domain [Transcription] Back     alignment and domain information
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription] Back     alignment and domain information
>KOG0491 consensus Transcription factor BSH, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG3802 consensus Transcription factor OCT-1, contains POU and HOX domains [Transcription] Back     alignment and domain information
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription] Back     alignment and domain information
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG0849 consensus Transcription factor PRD and related proteins, contain PAX and HOX domains [Transcription] Back     alignment and domain information
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription] Back     alignment and domain information
>KOG1168 consensus Transcription factor ACJ6/BRN-3, contains POU and HOX domains [Transcription] Back     alignment and domain information
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG0490 consensus Transcription factor, contains HOX domain [General function prediction only] Back     alignment and domain information
>KOG2252 consensus CCAAT displacement protein and related homeoproteins [Transcription] Back     alignment and domain information
>KOG0774 consensus Transcription factor PBX and related HOX domain proteins [Transcription] Back     alignment and domain information
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [] Back     alignment and domain information
>KOG1146 consensus Homeobox protein [General function prediction only] Back     alignment and domain information
>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription] Back     alignment and domain information
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription] Back     alignment and domain information
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A Back     alignment and domain information
>PF04218 CENP-B_N: CENP-B N-terminal DNA-binding domain; InterPro: IPR006695 Centromere Protein B (CENP-B) is a DNA-binding protein localized to the centromere Back     alignment and domain information
>PF00577 Usher: Outer membrane usher protein; InterPro: IPR000015 In Gram-negative bacteria the biogenesis of fimbriae (or pili) requires a two- component assembly and transport system which is composed of a periplasmic chaperone (see PDOC00552 from PROSITEDOC) and an outer membrane protein which has been termed a molecular 'usher' [, , ] Back     alignment and domain information
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query375
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 2e-07
2cuf_A95 FLJ21616 protein; homeobox domain, hepatocyte tran 4e-06
1e3o_C160 Octamer-binding transcription factor 1; transcript 2e-05
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 2e-05
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 2e-04
1ic8_A194 Hepatocyte nuclear factor 1-alpha; transcription r 3e-04
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Length = 164 Back     alignment and structure
 Score = 49.1 bits (116), Expect = 2e-07
 Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 7/124 (5%)

Query: 6   RNWPSMFKSKPYNTHHHQWQQRDVNSSSLMSNGNHRPSYTTVPGCEERSPEPKPRWNPKP 65
           + W  +   +       +W Q                      G +  +   KPR     
Sbjct: 47  KPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAACKRKEQEHGKDRGNTPKKPRLVFTD 106

Query: 66  EQIRILESIFNSGMVNPPRDEIRRIRAQLQ-EYGQVGDANVFYWFQNRKSRSKHKLRHIQ 124
            Q R L +IF      P ++    I  QL  E   V +     +F N + RS  K     
Sbjct: 107 VQRRTLHAIFKE-NKRPSKELQITISQQLGLELSTVSN-----FFMNARRRSLDKWLEHH 160

Query: 125 NSKQ 128
           +   
Sbjct: 161 HHHH 164
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 95 Back     alignment and structure
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Length = 160 Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 71 Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Length = 66 Back     alignment and structure
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Length = 194 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
1fjl_A81 Paired protein; DNA-binding protein, paired BOX, t 99.82
2dms_A80 Homeobox protein OTX2; homeobox domain, three heli 99.81
2da3_A80 Alpha-fetoprotein enhancer binding protein; homeob 99.81
2dmq_A80 LIM/homeobox protein LHX9; homeobox domain, three 99.81
1zq3_P68 PRD-4, homeotic bicoid protein; protein-DNA comple 99.81
2cue_A80 Paired box protein PAX6; homeobox domain, transcri 99.81
2kt0_A84 Nanog, homeobox protein nanog; homeodomain, struct 99.8
2dmt_A80 Homeobox protein BARH-like 1; homeobox domain, thr 99.8
2cra_A70 Homeobox protein HOX-B13; DNA-binding, transcripti 99.8
2dmu_A70 Homeobox protein goosecoid; homeobox domain, three 99.8
2vi6_A62 Homeobox protein nanog; homeodomain, DNA-binding, 99.8
2da1_A70 Alpha-fetoprotein enhancer binding protein; homeob 99.8
2hdd_A61 Protein (engrailed homeodomain Q50K); DNA binding, 99.8
3a01_A93 Homeodomain-containing protein; homeodomain, prote 99.8
2k40_A67 Homeobox expressed in ES cells 1; thermostable hom 99.8
2da2_A70 Alpha-fetoprotein enhancer binding protein; homeob 99.79
1ig7_A58 Homeotic protein MSX-1; helix-turn-helix, transcri 99.79
1nk2_P77 Homeobox protein VND; homeodomain, DNA-binding pro 99.79
2h1k_A63 IPF-1, pancreatic and duodenal homeobox 1, homeodo 99.79
1puf_A77 HOX-1.7, homeobox protein HOX-A9; homeodomian, pro 99.79
2djn_A70 Homeobox protein DLX-5; structural genomics, NPPSF 99.79
2l7z_A73 Homeobox protein HOX-A13; gene regulation; NMR {Ho 99.79
1bw5_A66 ISL-1HD, insulin gene enhancer protein ISL-1; DNA- 99.79
1jgg_A60 Segmentation protein EVEN-skipped; homeodomain, pr 99.79
2e1o_A70 Homeobox protein PRH; DNA binding protein, structu 99.79
1ahd_P68 Antennapedia protein mutant; DNA binding protein/D 99.78
2da4_A80 Hypothetical protein DKFZP686K21156; homeobox doma 99.78
1ftt_A68 TTF-1 HD, thyroid transcription factor 1 homeodoma 99.78
2cuf_A95 FLJ21616 protein; homeobox domain, hepatocyte tran 99.78
1wh5_A80 ZF-HD homeobox family protein; structural genomics 99.78
1b8i_A81 Ultrabithorax, protein (ultrabithorax homeotic pro 99.78
1yz8_P68 Pituitary homeobox 2; DNA binding protein, transcr 99.78
3a02_A60 Homeobox protein aristaless; homeodomain, developm 99.78
2m0c_A75 Homeobox protein aristaless-like 4; structural gen 99.78
2r5y_A88 Homeotic protein sex combs reduced; homeodomain; H 99.78
1uhs_A72 HOP, homeodomain only protein; structural genomics 99.77
1b72_A97 Protein (homeobox protein HOX-B1); homeodomain, DN 99.77
2dn0_A76 Zinc fingers and homeoboxes protein 3; triple home 99.77
2da5_A75 Zinc fingers and homeoboxes protein 3; homeobox do 99.77
3rkq_A58 Homeobox protein NKX-2.5; helix-turn-helix, DNA bi 99.76
2hi3_A73 Homeodomain-only protein; transcription; NMR {Mus 99.76
2ecb_A89 Zinc fingers and homeoboxes protein 1; homeobox do 99.76
1wh7_A80 ZF-HD homeobox family protein; homeobox domain, st 99.76
2ly9_A74 Zinc fingers and homeoboxes protein 1; structural 99.76
1akh_A61 Protein (mating-type protein A-1); complex (TWO DN 99.75
2dmp_A89 Zinc fingers and homeoboxes protein 2; homeobox do 99.75
2da6_A102 Hepatocyte nuclear factor 1-beta; homeobox domain, 99.75
1puf_B73 PRE-B-cell leukemia transcription factor-1; homeod 99.75
3a03_A56 T-cell leukemia homeobox protein 2; homeodomain, d 99.75
1b72_B87 Protein (PBX1); homeodomain, DNA, complex, DNA-bin 99.74
1du6_A64 PBX1, homeobox protein PBX1; homeodomain, gene reg 99.74
1lfb_A99 Liver transcription factor (LFB1); transcription r 99.74
2ecc_A76 Homeobox and leucine zipper protein homez; homeobo 99.73
3nar_A96 ZHX1, zinc fingers and homeoboxes protein 1; corep 99.73
1x2n_A73 Homeobox protein pknox1; homeobox domain, structur 99.72
1k61_A60 Mating-type protein alpha-2; protein-DNA complex, 99.71
2e19_A64 Transcription factor 8; homeobox domain, structura 99.71
1mnm_C87 Protein (MAT alpha-2 transcriptional repressor); t 99.7
1e3o_C160 Octamer-binding transcription factor 1; transcript 99.7
1au7_A146 Protein PIT-1, GHF-1; complex (DNA-binding protein 99.7
2xsd_C164 POU domain, class 3, transcription factor 1; trans 99.7
2cqx_A72 LAG1 longevity assurance homolog 5; homeodomain, D 99.7
3d1n_I151 POU domain, class 6, transcription factor 1; prote 99.69
2dmn_A83 Homeobox protein TGIF2LX; TGFB-induced factor 2-li 99.68
1le8_B83 Mating-type protein alpha-2; matalpha2, isothermal 99.68
2l9r_A69 Homeobox protein NKX-3.1; structural genomics, nor 99.67
2d5v_A164 Hepatocyte nuclear factor 6; transcription factor, 99.66
3l1p_A155 POU domain, class 5, transcription factor 1; POU, 99.65
3nau_A66 Zinc fingers and homeoboxes protein 2; ZHX2, corep 99.64
1wi3_A71 DNA-binding protein SATB2; homeodomain, helix-turn 99.64
1x2m_A64 LAG1 longevity assurance homolog 6; homeobox domai 99.63
3k2a_A67 Homeobox protein MEIS2; homeobox domain, DNA-bindi 99.59
1ic8_A194 Hepatocyte nuclear factor 1-alpha; transcription r 99.53
2h8r_A221 Hepatocyte nuclear factor 1-beta; trasncription fa 99.45
2da7_A71 Zinc finger homeobox protein 1B; homeobox domain, 99.39
1mh3_A421 Maltose binding-A1 homeodomain protein chimera; MA 99.38
2lk2_A89 Homeobox protein TGIF1; NESG, structural genomics, 99.28
2nzz_A37 Penetratin conjugated GAS (374-394) peptide; confo 98.71
3fcg_A90 F1 capsule-anchoring protein; beta barrel, beta st 85.46
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B Back     alignment and structure
Probab=99.82  E-value=4.7e-21  Score=149.85  Aligned_cols=72  Identities=21%  Similarity=0.359  Sum_probs=59.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhh
Q 036145           46 TVPGCEERSPEPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRH  122 (375)
Q Consensus        46 s~p~~~~rsp~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~  122 (375)
                      +.|+.......+|.|+.||++|+.+||..|+.++ ||+..+|.+||++|+    |++++|++||||||+|+||+.+.
T Consensus         8 ~~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~qV~~WFqNrR~k~rk~~~~   79 (81)
T 1fjl_A            8 SEPGIALKRKQRRSRTTFSASQLDELERAFERTQ-YPDIYTREELAQRTN----LTEARIQVWFQNRRARLRKQHTS   79 (81)
T ss_dssp             ---------CCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcccCCCCCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHC----cCHHHHHHHHHHHhhhhhhhccc
Confidence            3344555677899999999999999999999997 999999999999997    99999999999999999998753
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus} Back     alignment and structure
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A Back     alignment and structure
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster} Back     alignment and structure
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens} Back     alignment and structure
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A Back     alignment and structure
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus} Back     alignment and structure
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A Back     alignment and structure
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A* Back     alignment and structure
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 Back     alignment and structure
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A Back     alignment and structure
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1 Back     alignment and structure
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A* Back     alignment and structure
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P Back     alignment and structure
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A Back     alignment and structure
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A* Back     alignment and structure
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens} Back     alignment and structure
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1 Back     alignment and structure
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A* Back     alignment and structure
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B* Back     alignment and structure
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens} Back     alignment and structure
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P Back     alignment and structure
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A Back     alignment and structure
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens} Back     alignment and structure
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1 Back     alignment and structure
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1 Back     alignment and structure
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A Back     alignment and structure
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus} Back     alignment and structure
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens} Back     alignment and structure
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens} Back     alignment and structure
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B* Back     alignment and structure
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A Back     alignment and structure
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A Back     alignment and structure
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens} Back     alignment and structure
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Back     alignment and structure
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Back     alignment and structure
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A Back     alignment and structure
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens} Back     alignment and structure
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A Back     alignment and structure
>3fcg_A F1 capsule-anchoring protein; beta barrel, beta strand swapping, cell membrane, cell outer membrane, cell projection, fimbrium, membrane; 2.85A {Yersinia pestis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 375
d2cufa182 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HM 9e-08
d1lfba_78 a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HN 1e-07
d1wi3a_71 a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Hom 3e-07
d1pufb_73 a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 96 3e-06
d2cuea168 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (H 8e-06
d1fjla_65 a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila 3e-05
d1k61a_60 a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast 4e-05
d1ftta_68 a.4.1.1 (A:) Thyroid transcription factor 1 homeod 5e-05
d1zq3p167 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fl 5e-05
d1bw5a_66 a.4.1.1 (A:) Insulin gene enhancer protein isl-1 { 7e-05
d1au7a158 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Ra 8e-05
d1x2ma152 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 9e-05
d1yz8p160 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo 1e-04
d1uhsa_72 a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse 2e-04
d1s7ea150 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {M 2e-04
d1x2na162 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (H 2e-04
d1jgga_57 a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly ( 2e-04
d2cqxa159 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 3e-04
d1ig7a_58 a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculu 6e-04
d2craa158 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human ( 6e-04
d1le8a_53 a.4.1.1 (A:) Mating type protein A1 Homeodomain {B 8e-04
d2e1oa157 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo 8e-04
d1vnda_77 a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophi 0.002
d1wh7a_80 a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Tha 0.002
d1pufa_77 a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus m 0.003
d9anta_56 a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila 0.003
d1p7ia_53 a.4.1.1 (A:) Engrailed Homeodomain {Drosophila mel 0.004
d1b72a_88 a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo 0.004
d1ocpa_67 a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus mus 0.004
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeobox-containing protein 1, HMBOX1 (Flj21616)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 9e-08
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 58  KPRWNPKPEQIRILESIFNSG--MVNPPRDEI--------RRIRAQLQEYGQVGDANVFY 107
             R+  + E + ++ES FN         R+EI        ++   +L +  +V    V+ 
Sbjct: 2   GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 61

Query: 108 WFQNRKSRSKHKLR 121
           WF NR+   K +  
Sbjct: 62  WFANRRKEIKRRAN 75
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Length = 78 Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 65 Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 60 Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 68 Back     information, alignment and structure
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 67 Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 66 Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 58 Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Length = 72 Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Length = 62 Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 57 Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 59 Back     information, alignment and structure
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 58 Back     information, alignment and structure
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Length = 58 Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 53 Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Length = 57 Back     information, alignment and structure
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 77 Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 80 Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 77 Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 56 Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Length = 53 Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Length = 67 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query375
d1zq3p167 Homeotic bicoid protein {Fruit fly (Drosophila mel 99.84
d2craa158 Homeobox protein hox-b13 {Human (Homo sapiens) [Ta 99.84
d1ig7a_58 Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10 99.83
d1jgga_57 Even-skipped homeodomain {Fruit fly (Drosophila me 99.83
d2cuea168 Paired box protein pax6 {Human (Homo sapiens) [Tax 99.82
d2e1oa157 Homeobox protein prh {Human (Homo sapiens) [TaxId: 99.82
d1pufa_77 Homeobox protein hox-a9 {Mouse (Mus musculus) [Tax 99.82
d9anta_56 Antennapedia Homeodomain {Drosophila melanogaster 99.82
d1p7ia_53 Engrailed Homeodomain {Drosophila melanogaster [Ta 99.82
d1b72a_88 Homeobox protein hox-b1 {Human (Homo sapiens) [Tax 99.82
d2cufa182 Homeobox-containing protein 1, HMBOX1 (Flj21616) { 99.82
d1fjla_65 Paired protein {Fruit fly (Drosophila melanogaster 99.81
d1vnda_77 VND/NK-2 protein {Fruit fly (Drosophila melanogast 99.8
d1uhsa_72 Homeodomain-only protein, Hop {Mouse (Mus musculus 99.8
d1yz8p160 Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 99.8
d1ftta_68 Thyroid transcription factor 1 homeodomain {Rat (R 99.8
d1bw5a_66 Insulin gene enhancer protein isl-1 {Rat (Rattus n 99.79
d1wi3a_71 DNA-binding protein SATB2 {Human (Homo sapiens) [T 99.77
d1le8a_53 Mating type protein A1 Homeodomain {Baker's yeast 99.76
d1au7a158 Pit-1 POU homeodomain {Rat (Rattus norvegicus) [Ta 99.76
d1ocpa_67 Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId 99.76
d1lfba_78 Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rat 99.75
d2ecba176 Zinc fingers and homeoboxes protein 1, ZHX1 {Human 99.73
d1e3oc157 Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId 99.72
d1s7ea150 Hepatocyte nuclear factor 6 {Mouse (Mus musculus) 99.71
d1wh7a_80 ZF-HD homeobox protein At4g24660 {Thale cress (Ara 99.7
d1pufb_73 pbx1 {Human (Homo sapiens) [TaxId: 9606]} 99.69
d2ecca176 Homeobox-leucine zipper protein Homez {Human (Homo 99.67
d1x2ma152 Lag1 longevity assurance homolog 6, LASS6 {Mouse ( 99.62
d2cqxa159 LAG1 longevity assurance homolog 5, LASS5 {Mouse ( 99.58
d1k61a_60 mat alpha2 Homeodomain {Baker's yeast (Saccharomyc 99.57
d1x2na162 Homeobox protein pknox1 {Human (Homo sapiens) [Tax 99.52
d1ijwc_47 HIN recombinase (DNA-binding domain) {Synthetic} 85.78
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Homeotic bicoid protein
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.84  E-value=1.2e-22  Score=155.07  Aligned_cols=64  Identities=28%  Similarity=0.394  Sum_probs=59.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhcCCCCCCceeeccCcchhhhhhhhhhhH
Q 036145           56 EPKPRWNPKPEQIRILESIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHIQ  124 (375)
Q Consensus        56 ~~R~Rt~FT~eQL~~LE~~F~~~~~yPs~~eR~qLA~~L~~~g~LtE~qVkvWFQNRRAK~KRk~r~~q  124 (375)
                      |+|+|+.||++|+.+||.+|+.++ ||+.++|.+||+.|+    |++++|+|||||||+|+|++..+.+
T Consensus         1 Prr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l~----l~~~~V~iWFqNrR~k~kk~~~~~~   64 (67)
T d1zq3p1           1 PRRTRTTFTSSQIAELEQHFLQGR-YLTAPRLADLSAKLA----LGTAQVKIWFKNRRRRHKIQSDQHK   64 (67)
T ss_dssp             CSCCSCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHhC----CCccceeeccccHHHhHhhhhhhcc
Confidence            578999999999999999999997 999999999999997    9999999999999999998776544
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]} Back     information, alignment and structure
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic} Back     information, alignment and structure