Citrus Sinensis ID: 036154

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
Protein Sequence
MVNSRHSVIPPVKYTEHRKHTKLMTPFSTNGQEMKPRVVRISVTDGDATDSSSDEDCEVYKRPRVKKFLSEIMIASSSSSSEIDVVSKSRISKCKKKKKSGKVGAPATLKPAAKQPAGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPPPKFPSQIKQSLSS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEEccccccEEEEEccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEEEEEEEEccccccccccccEEEEEEEEcccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEccccccEEEEcccccHHHHHHHHHHHHHHHcccccEEccccccccccccccccccc
Coil and Loop (DISEMBL)
mvnsrhsvippvkytehrkhtklmtpfstngqemkprVVRISvtdgdatdsssdedcevykrprvKKFLSEIMIasssssseidvvSKSRiskckkkkksgkvgapatlkpaakqpagkkfrgvrqrpwgkwaaEIRDPLRRVRLWLGTYDTAEEAAMVYDNAaiqlrgpdaltnfatpppkfpsqikqslss
Flexible Loop (DISEMBL)
mvnsrhsvippvkytehrkhtklmtpfstngqemkpRVVRISvtdgdatdsssdedcevykrprvkKFLSEIMiasssssseidvvsksriskckkkkksgkvgapatlkpaakqpagkkfrgvrqrpwgkwaaeirdplrrVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFatpppkfpsqikqslss
Low Complexity Region (SEG)
MVNSRHSVIPPVKYTEHRKHTKLMTPFSTNGQEMKPRVVRISVTDGDATDSSSDEDCEVYKRPRVKKFLseimiasssssseidvvsksriskckkkkksgkVGAPATLKPAAKQPAGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPPPKFPSQIKQSLSS
Disordered region (IsUnstruct)
***************************************************************************************************************************VRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDAL********************
Disordered Region (DISOPRED)
****************************************ISVTDGDATDS****************FLS******************************************************RQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFA****************
Disordered Region (DISEMBL)
MVNSRHSVIPPVKYTEHRKHTKLMTPFSTNGQEMKPRVVRISVT**************VYKRPRVKKFLSEIMIA****************************************************PWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPPPK***********
Disordered Region (DISPRO)
*******VIPPVKYTEHRKHTKLMTPFSTNGQEMKPRVVRISVTDGD***************PRVKKFLSEIMIAS****************************************AGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATP**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVNSRHSVIPPVKYTEHRKHTKLMTPFSTNGQEMKPRVVRISVTDGDATDSSSDEDCEVYKRPRVKKFLSEIMIASSSSSSEIDVVSKSRISKCKKKKKSGKVGAPATLKPAAKQPAGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPPPKFPSQIKQSLSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	193	2.2.26 [Sep-21-2011]
Q9SUQ2	343	Ethylene-responsive trans	yes	no	0.854	0.481	0.560	2e-41
Q9SUE3	335	Ethylene-responsive trans	no	no	0.870	0.501	0.530	2e-40
O82503	287	Ethylene-responsive trans	no	no	0.720	0.484	0.546	2e-33
Q9FK12	354	Ethylene-responsive trans	no	no	0.839	0.457	0.516	9e-32
Q9M374	315	Ethylene-responsive trans	no	no	0.865	0.530	0.491	1e-29
Q9C995	161	Ethylene-responsive trans	no	no	0.673	0.807	0.503	7e-29
O82339	294	Ethylene-responsive trans	no	no	0.777	0.510	0.452	7e-28
O04682	248	Pathogenesis-related gene	N/A	no	0.746	0.580	0.447	7e-24
Q8W4I5	159	Ethylene-responsive trans	no	no	0.658	0.798	0.533	1e-23
Q84XB3	244	Ethylene-responsive trans	N/A	no	0.373	0.295	0.616	2e-20

>sp|Q9SUQ2|CRF2_ARATH Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=1 SV=1

 Score =  168 bits (426), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/182 (56%), Positives = 127/182 (69%), Gaps = 17/182 (9%)

Query: 8   VIPPVKYTEHRKHTKLMTPFSTNGQEMKPRVVRISVTDGDATDSSSDEDCE-----VYKR 62
           V+P +K+TEH+ +T  +    TN  +   R++RISVTD DATDSSSD++ E     V KR
Sbjct: 8   VLPRIKFTEHKTNTTTIVSELTNTHQT--RILRISVTDPDATDSSSDDEEEEHQRFVSKR 65

Query: 63  PRVKKFLSEIMIASSSSSSEIDVVSKSRISKCKKKKKSGKVGAPATLKP---AAKQPAG- 118
            RVKKF++E+ + S +      VV+ S      KK++   V + +T+ P   A     G 
Sbjct: 66  RRVKKFVNEVYLDSGA------VVTGSCGQMESKKRQKRAVKSESTVSPVVSATTTTTGE 119

Query: 119 KKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFAT 178
           KKFRGVRQRPWGKWAAEIRDPL+RVRLWLGTY+TAEEAAMVYDNAAIQLRGPDALTNF+ 
Sbjct: 120 KKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNFSV 179

Query: 179 PP 180
            P
Sbjct: 180 TP 181

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUE3|CRF4_ARATH Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=1 SV=2

 Score =  165 bits (417), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/181 (53%), Positives = 122/181 (67%), Gaps = 13/181 (7%)

Query: 11  PVKYTEH----RKHTKLMTPFSTNGQEMKPRVVRISVTDGDATDSSSDEDCEVYKRPRVK 66
           PVKYTEH    RK+TK  +           R+VR+S+TD DATDSSSDE+  ++ R RVK
Sbjct: 11  PVKYTEHKTVIRKYTKKSSMERKTSVRDSARLVRVSMTDRDATDSSSDEEEFLFPRRRVK 70

Query: 67  KFLSEIMIASSSSSSEIDVVSKSRISKCKKKKKSGKVGAPATL-KPAAKQPAGKKFRGVR 125
           + ++EI +  SSSS+  DV +    S  K +K+   +   +T+ KP+      KK+RGVR
Sbjct: 71  RLINEIRVEPSSSSTG-DVSA----SPTKDRKR---INVDSTVQKPSVSGQNQKKYRGVR 122

Query: 126 QRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPPPKFPS 185
           QRPWGKWAAEIRDP +R R+WLGT+ TAEEAA+VYDNAAI+LRGPDALTNF   P   P 
Sbjct: 123 QRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQPEPEPV 182

Query: 186 Q 186
           Q
Sbjct: 183 Q 183

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O82503|CRF1_ARATH Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=1 SV=1

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/161 (54%), Positives = 106/161 (65%), Gaps = 22/161 (13%)

Query: 36  PRVVRISVTDGDATDSSSDEDCEV------YKRPRVKKFLSEIMIASSSSSSEIDVVSKS 89
           PR++RISVTD  ATDSSSDE+ EV       KR RVKK++ E+++ S        VVS  
Sbjct: 10  PRILRISVTDPYATDSSSDEEEEVDFDALSTKRRRVKKYVKEVVLDS--------VVSDK 61

Query: 90  RISKCKKKKKSGKVGAPATLKPAAKQPAGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGT 149
                KK+KK           P     A +KFRGVRQRPWGKWAAEIRDP RRVR+WLGT
Sbjct: 62  EKPMKKKRKKR------VVTVPVVVTTATRKFRGVRQRPWGKWAAEIRDPSRRVRVWLGT 115

Query: 150 YDTAEEAAMVYDNAAIQLRGPDALTNFATPPPKFPSQIKQS 190
           +DTAEEAA+VYDNAAIQLRGP+A  NF  PPP     ++++
Sbjct: 116 FDTAEEAAIVYDNAAIQLRGPNAELNF--PPPPVTENVEEA 154

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FK12|CRF3_ARATH Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=1 SV=1

 Score =  136 bits (342), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 92/178 (51%), Positives = 119/178 (66%), Gaps = 16/178 (8%)

Query: 11  PVKYTEHR----KHTKLMTPFSTNGQEMKPRVVRISVTDGDATDSSSDEDCE--VYKRPR 64
           P+KYTEH+    K+TK  +   + G+ +K   V I  TD DATDSSSDED E  ++ R R
Sbjct: 9   PLKYTEHKTSMTKYTKKSSEKLSGGKSLKK--VSICYTDPDATDSSSDEDEEDFLFPRRR 66

Query: 65  VKKFLSEIMIASSSSSSEIDVVSKSRISKCKKKKKSGKVGAPAT--LKPAAKQPAG---K 119
           VK+F++EI +  S ++    V  K R    +    S +  +PA+   +P  K       K
Sbjct: 67  VKRFVNEITVEPSCNNVVTGVSMKDR---KRLSSSSDETQSPASSRQRPNNKVSVSGQIK 123

Query: 120 KFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFA 177
           KFRGVRQRPWGKWAAEIRDP +R R+WLGT++TAEEAA+VYDNAAI+LRGPDALTNF+
Sbjct: 124 KFRGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFS 181

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M374|CRF6_ARATH Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=1 SV=1

 Score =  129 bits (323), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/185 (49%), Positives = 115/185 (62%), Gaps = 18/185 (9%)

Query: 12  VKYTEHRKHTKLM-TPFSTNGQEMKPRVVRISVTDGDATDSSSDEDCE--VYKRPRVKKF 68
           VK+TE+R  T +  TP  +NG    PR+VRI+VTD  ATDSSSD+D    V   PRVK++
Sbjct: 8   VKFTENRTVTNVAATP--SNGS---PRLVRITVTDPFATDSSSDDDDNNNVTVVPRVKRY 62

Query: 69  LSEIMIASSSSSSEIDVVSKSRISKCKKKKKSGKVGAPATLKPAAKQPAGKKFRGVRQRP 128
           + EI      SSS       S  ++  K K+   V     +  + K    KK+RGVRQRP
Sbjct: 63  VKEIRFCQGESSS-------STAARKGKHKEEESVVVEDDVSTSVKP---KKYRGVRQRP 112

Query: 129 WGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPPPKFPSQIK 188
           WGK+AAEIRDP  R R+WLGT+ TAEEAA+ YD AAI L+GP ALTNF TPP   P    
Sbjct: 113 WGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTPPTPTPVIDL 172

Query: 189 QSLSS 193
           Q++S+
Sbjct: 173 QTVSA 177

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C995|ERF70_ARATH Ethylene-responsive transcription factor ERF070 OS=Arabidopsis thaliana GN=ERF070 PE=1 SV=1

 Score =  127 bits (318), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 77/153 (50%), Positives = 94/153 (61%), Gaps = 23/153 (15%)

Query: 37  RVVRISVTDGDATDSSSDEDCE-----VYKRPRVKKFLSEIMIASSSSSSEIDVVSKSRI 91
           R++RIS TD +ATDSSSDED E        R R K+ + EI+I  S S+ ++DV      
Sbjct: 3   RIIRISFTDAEATDSSSDEDTEERGGASQTRRRGKRLVKEIVIDPSDSADKLDV------ 56

Query: 92  SKCKKKKKSGKVGAPATLKPAAKQPAGKKFRGVRQRPWGKWAAEIRDPL-----RRVRLW 146
             CK + K   +  PA     AK    KK+RGVRQRPWGKW AEIR        RR RLW
Sbjct: 57  --CKTRFK---IRIPAEFLKTAKTE--KKYRGVRQRPWGKWVAEIRCGRGACKGRRDRLW 109

Query: 147 LGTYDTAEEAAMVYDNAAIQLRGPDALTNFATP 179
           LGT++TAEEAA+ YDNA+I+L GP A TNF  P
Sbjct: 110 LGTFNTAEEAALAYDNASIKLIGPHAPTNFGLP 142

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O82339|CRF5_ARATH Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=1 SV=1

 Score =  123 bits (309), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 99/170 (58%), Gaps = 20/170 (11%)

Query: 13  KYTEHRKHTKLMTPFSTNGQEMKPRVVRISVTDGDATDSSSDEDCEVYK-RPRVKKFLSE 71
           KYT HRK T   TPF     +  P++V+I VTD  ATDSSSDE+ +     PRVK+++ E
Sbjct: 9   KYTVHRKITS--TPF-----DGFPKIVKIIVTDPCATDSSSDEENDNKSVAPRVKRYVDE 61

Query: 72  IMIASSSSSSEIDVVSKSRISKCKKKKKSGKVGAPATLKPAAKQPAGKKFRGVRQRPWGK 131
           I         +    +K +      +     V +              K+RGVRQRPWGK
Sbjct: 62  IRFCDEDDEPKPARKAKKKSPAAAAENGGDLVKSVV------------KYRGVRQRPWGK 109

Query: 132 WAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPPP 181
           +AAEIRDP  R RLWLGT+ TAEEAA+ YD AAI+++G +A TNF TPPP
Sbjct: 110 FAAEIRDPSSRTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNFLTPPP 159

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O04682|PTI6_SOLLC Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1

 Score =  110 bits (274), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 77/172 (44%), Positives = 103/172 (59%), Gaps = 28/172 (16%)

Query: 9   IPPVKYTEH----RKHTKLMTPFSTNGQEMKPRVVRISVTDGDATDSSSDEDCEVYKRPR 64
           +P +K+T+H     KH  + +  +        RVVRI +TD DATDSS DE     +R  
Sbjct: 6   VPVIKFTQHIVTTNKH--VFSEHNEKSNSELQRVVRIILTDADATDSSDDEGRNTVRR-- 61

Query: 65  VKKFLSEIMIASSSSSSEIDVVSKSRISKCKKKKKSGKVGAPATLKPAAKQPAGKKFRGV 124
           VK+ ++EI +  S+ S          I   K++          ++ P +     KKFRGV
Sbjct: 62  VKRHVTEINLMPSTKS----------IGDRKRR----------SVSPDSDVTRRKKFRGV 101

Query: 125 RQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNF 176
           RQRPWG+WAAEIRDP R  R+WLGTYDT EEAA+VYD AA++L+GPDA+TNF
Sbjct: 102 RQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNF 153

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants.

Solanum lycopersicum (taxid: 4081)

>sp|Q8W4I5|ERF69_ARATH Ethylene-responsive transcription factor ERF069 OS=Arabidopsis thaliana GN=ERF069 PE=1 SV=1

 Score =  109 bits (273), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/150 (53%), Positives = 91/150 (60%), Gaps = 23/150 (15%)

Query: 37  RVVRISVTDGDATDSSSDEDCEVYK-RPRVKKFLSEIMIASSSSSSEIDVVSKSRISKCK 95
           R+VRIS TD +ATDSSS ED      R R KK + EI+I  S        V K+R     
Sbjct: 3   RIVRISFTDMEATDSSSSEDESPPSSRRRGKKLVKEIVIDHSDPPE----VGKTRF---- 54

Query: 96  KKKKSGKVGAPATLKPAAKQPAGKK-FRGVRQRPWGKWAAEIRDPLRRV-----RLWLGT 149
                 K+  PA+L  A    A KK FRGVRQRPWGKWAAEIR    RV     R+WLGT
Sbjct: 55  ------KIRIPASLLAARNTTANKKKFRGVRQRPWGKWAAEIR--CGRVKGRPERIWLGT 106

Query: 150 YDTAEEAAMVYDNAAIQLRGPDALTNFATP 179
           ++TAEEAA+ YDNAAIQL GPDA TNF  P
Sbjct: 107 FETAEEAALAYDNAAIQLIGPDAPTNFGRP 136

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84XB3|ERF1_SOLLC Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 57/73 (78%), Gaps = 1/73 (1%)

Query: 105 APATLKPAAKQPAGKKFRGVRQRPWGKWAAEIRDPLRR-VRLWLGTYDTAEEAAMVYDNA 163
           +P T+ PAA QP G+ +RGVRQRPWGK+AAEIRDP +   R+WLGTY++AEEAA+ Y  A
Sbjct: 91  SPPTVAPAALQPKGRHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKA 150

Query: 164 AIQLRGPDALTNF 176
           A ++RG  AL NF
Sbjct: 151 AFRMRGTKALLNF 163

Involved in the regulation of gene expression during fruit ripening, by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Probably acts as a transcriptional activator and may be involved in disease resistance pathways.

Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
147801286	292	hypothetical protein VITISV_007771 [Viti	0.891	0.589	0.659	8e-58
225426038	327	PREDICTED: ethylene-responsive transcrip	0.891	0.525	0.659	2e-57
449452420	318	PREDICTED: ethylene-responsive transcrip	0.844	0.512	0.642	2e-55
449501843	318	PREDICTED: ethylene-responsive transcrip	0.844	0.512	0.642	5e-55
224058399	347	AP2/ERF domain-containing transcription	0.891	0.495	0.606	3e-49
449464098	319	PREDICTED: ethylene-responsive transcrip	0.813	0.492	0.613	2e-48
449463464	326	PREDICTED: ethylene-responsive transcrip	0.844	0.5	0.594	3e-48
224118152	365	AP2/ERF domain-containing transcription	0.901	0.476	0.550	1e-47
224072103	348	AP2/ERF domain-containing transcription	0.880	0.488	0.588	5e-47
255545072	309	Ethylene-responsive transcription factor	0.865	0.540	0.546	1e-46

>gi|147801286|emb|CAN77118.1| hypothetical protein VITISV_007771 [Vitis vinifera]

 Score =  228 bits (581), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 118/179 (65%), Positives = 140/179 (78%), Gaps = 7/179 (3%)

Query: 8   VIPPVKYTEHRKHTKLMTPFST--NGQEMK---PRVVRISVTDGDATDSSSDEDCEVYKR 62
           ++ P+KY+EHRK TKL+T  S    G+ M    PR+VRISVTDGDATDSSSDE+ E++ R
Sbjct: 1   MLSPIKYSEHRKRTKLLTTSSEKFTGRSMNADGPRIVRISVTDGDATDSSSDEEGELFAR 60

Query: 63  PRVKKFLSEIMIAS-SSSSSEIDVVSKSRISKCKKKKKSGKVGAPATLKPAAKQPAGKKF 121
            RVKKF++EI I S S  +S+   V +SR ++  +KK +GK G    ++  AK   GKKF
Sbjct: 61  QRVKKFVNEITIQSCSGXNSDGTTVWRSRSARNGRKKSTGK-GEAQAVRQLAKPSTGKKF 119

Query: 122 RGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPP 180
           RGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFA+PP
Sbjct: 120 RGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFASPP 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426038|ref|XP_002271526.1| PREDICTED: ethylene-responsive transcription factor CRF2 [Vitis vinifera]

 Score =  227 bits (578), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 118/179 (65%), Positives = 140/179 (78%), Gaps = 7/179 (3%)

Query: 8   VIPPVKYTEHRKHTKLMTPFST--NGQEMK---PRVVRISVTDGDATDSSSDEDCEVYKR 62
           ++ P+KY+EHRK TKL+T  S    G+ M    PR+VRISVTDGDATDSSSDE+ E++ R
Sbjct: 1   MLSPIKYSEHRKRTKLLTTSSEKFTGRSMNADGPRIVRISVTDGDATDSSSDEEGELFAR 60

Query: 63  PRVKKFLSEIMIAS-SSSSSEIDVVSKSRISKCKKKKKSGKVGAPATLKPAAKQPAGKKF 121
            RVKKF++EI I S S  +S+   V +SR ++  +KK +GK G    ++  AK   GKKF
Sbjct: 61  QRVKKFVNEITIQSCSGENSDGTTVWRSRSARNGRKKSTGK-GEAQAVRQLAKPSTGKKF 119

Query: 122 RGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPP 180
           RGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFA+PP
Sbjct: 120 RGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFASPP 178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452420|ref|XP_004143957.1| PREDICTED: ethylene-responsive transcription factor CRF2-like [Cucumis sativus]

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/168 (64%), Positives = 130/168 (77%), Gaps = 5/168 (2%)

Query: 11  PVKYTEHRKHTKLMTPFSTNGQEMKPRVVRISVTDGDATDSSSDEDCEVYKRPRVKKFLS 70
           P+KYTEH  H KL     T+  +++PRVVRISVTDGDATDSSSD++ E++ R RVKKF++
Sbjct: 10  PIKYTEHLNHVKL-----TSMPDIRPRVVRISVTDGDATDSSSDDESEMFGRHRVKKFVN 64

Query: 71  EIMIASSSSSSEIDVVSKSRISKCKKKKKSGKVGAPATLKPAAKQPAGKKFRGVRQRPWG 130
           EI I  S S     +   +R ++  +++ +GK G P+  + +AK   GKKFRGVRQRPWG
Sbjct: 65  EISIEPSCSGEGNRIWGSNRSARTGQRRSTGKCGVPSRNRRSAKVSTGKKFRGVRQRPWG 124

Query: 131 KWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFAT 178
           KWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNF T
Sbjct: 125 KWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTT 172

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449501843|ref|XP_004161474.1| PREDICTED: ethylene-responsive transcription factor CRF2-like [Cucumis sativus]

 Score =  219 bits (557), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 108/168 (64%), Positives = 130/168 (77%), Gaps = 5/168 (2%)

Query: 11  PVKYTEHRKHTKLMTPFSTNGQEMKPRVVRISVTDGDATDSSSDEDCEVYKRPRVKKFLS 70
           P+KYTEH  H KL     T+  +++PRVVRISVTDGDATDSSSD++ E++ R RVKKF++
Sbjct: 10  PIKYTEHLNHVKL-----TSMPDIRPRVVRISVTDGDATDSSSDDEPEMFGRHRVKKFVN 64

Query: 71  EIMIASSSSSSEIDVVSKSRISKCKKKKKSGKVGAPATLKPAAKQPAGKKFRGVRQRPWG 130
           EI I  S S     +   +R ++  +++ +GK G P+  + +AK   GKKFRGVRQRPWG
Sbjct: 65  EISIEPSCSGEGNRIWGSNRSARTGQRRSTGKCGVPSRNRRSAKVSTGKKFRGVRQRPWG 124

Query: 131 KWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFAT 178
           KWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNF T
Sbjct: 125 KWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTT 172

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058399|ref|XP_002299493.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222846751|gb|EEE84298.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 114/188 (60%), Positives = 129/188 (68%), Gaps = 16/188 (8%)

Query: 11  PVKYTEHRKHTKLMTPFSTNGQEMK--PRVVRISVTDGDATDSSSDEDCEV-----YKR- 62
           PVK++EHR  TKL T F +N  +    P++VRISVTD  ATDSSSDE+ EV     +KR 
Sbjct: 4   PVKFSEHRNQTKLTTSFLSNPVQHSKPPKIVRISVTDTYATDSSSDEENEVAAGSSHKRH 63

Query: 63  -PRVKKFLSEIMIASSSSSSEIDVVSKSRISKCK----KKKKSGKVGAPATLKPA---AK 114
             RVKKF++EI I   SSS   D V    +   K     +KK G  G+     P+   A 
Sbjct: 64  VTRVKKFVNEISIEPPSSSRSADCVPVDTVLGTKPSRSARKKVGDNGSRTRRFPSKATAT 123

Query: 115 QPAGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALT 174
              GKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALT
Sbjct: 124 VVVGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALT 183

Query: 175 NFATPPPK 182
           NF TPP +
Sbjct: 184 NFVTPPAR 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464098|ref|XP_004149766.1| PREDICTED: ethylene-responsive transcription factor CRF2-like [Cucumis sativus] gi|449527296|ref|XP_004170648.1| PREDICTED: ethylene-responsive transcription factor CRF2-like [Cucumis sativus]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 108/176 (61%), Positives = 126/176 (71%), Gaps = 19/176 (10%)

Query: 8   VIPPVKYTEHRKHTKLMTPFSTNGQEMKPRVVRISVTDGDATDSSSDEDCEVYKRPRVKK 67
           V+PP+KYTEHR  T+L++        M P+VVRISVTD DATDSSSDE+ E Y   RV+K
Sbjct: 11  VVPPIKYTEHRNQTRLVS-----SPLMGPKVVRISVTDADATDSSSDEEKEEYVCRRVRK 65

Query: 68  FLSEIMIASSSSSSEIDVVSKSRISKCKKKKKSGKVGAPATLKPAAKQ-PAG-KKFRGVR 125
           F++EI I +SS+               +KK   GK    A  + + KQ PAG +KFRGVR
Sbjct: 66  FVNEITIEASSTGK-----------SSRKKSTGGKSKFAAVNRGSLKQMPAGSRKFRGVR 114

Query: 126 QRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPPP 181
           QRPWGKWAAEIRDP RRVR+WLGTY+TAEEAAMVYDNAAIQLRGP ALTNF TPPP
Sbjct: 115 QRPWGKWAAEIRDPSRRVRVWLGTYNTAEEAAMVYDNAAIQLRGPTALTNF-TPPP 169

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463464|ref|XP_004149454.1| PREDICTED: ethylene-responsive transcription factor CRF4-like [Cucumis sativus]

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 104/175 (59%), Positives = 123/175 (70%), Gaps = 12/175 (6%)

Query: 7   SVIPPVKYTEHRKHTKLMTPFSTNGQEMKPRVVRISVTDGDATDSSSDEDCEVYKRPRVK 66
           ++  PVK+TEHR  T   +  +    + + RVVRISVTD DATDSSSDED + ++R RVK
Sbjct: 4   TLFSPVKFTEHRNFTNKFS--AKKHHQSESRVVRISVTDPDATDSSSDED-DFFERQRVK 60

Query: 67  KFLSEIMIASSSSSSEIDVVSKSRISKCKKKKKSGKVGAPATLKPAAKQPAGKKFRGVRQ 126
           K+++EI I S   ++ +    K       + ++ GKV  P           GKKFRGVRQ
Sbjct: 61  KYINEIKIQSGCRNNLLPSCRKRPAGDRSEFRRQGKVVPPTN---------GKKFRGVRQ 111

Query: 127 RPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPPP 181
           RPWGKWAAEIRDP RRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPPP
Sbjct: 112 RPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPPP 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118152|ref|XP_002317743.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222858416|gb|EEE95963.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 104/189 (55%), Positives = 128/189 (67%), Gaps = 15/189 (7%)

Query: 6   HSVIPPVKYTEHRKHTKLMT--PFSTNGQEMK------------PRVVRISVTDGDATDS 51
            S++ P+KYTEH+K TK  T  P   N                 PR+VR++VTD DATDS
Sbjct: 4   QSILCPIKYTEHKKVTKKFTKQPLKPNMVHSDDRCRSPEPSNPAPRLVRVTVTDHDATDS 63

Query: 52  SSDEDCEVYKRPRVKKFLSEIMIASSSSSSEIDVVSKSRISKCKKKKKSGKVGAPATLKP 111
           SSDE+ E++ R RVK+++SEI I  ++   E +V++ + I+K +K+        PA    
Sbjct: 64  SSDEEGELFGRQRVKRYVSEINIQPAAFCKETNVIATT-IAKNRKRSVGDIPQKPAKRLT 122

Query: 112 AAKQPAGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPD 171
           A     G+KFRGVRQRPWGKWAAEIRDP RRVRLWLGTYDTAEEAA VYDNAAI+LRGPD
Sbjct: 123 AQSTTNGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAARVYDNAAIKLRGPD 182

Query: 172 ALTNFATPP 180
           ALTNF TPP
Sbjct: 183 ALTNFTTPP 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072103|ref|XP_002303625.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222841057|gb|EEE78604.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 110/187 (58%), Positives = 125/187 (66%), Gaps = 17/187 (9%)

Query: 11  PVKYTEHRKHTKLMTPFSTNGQEMK--PRVVRISVTDGDATDSSSDEDCEVYKRP----- 63
           PVK+TEHR  TKL  PF +N  +    P++VRISVTD  ATDSSSDE+ EV +       
Sbjct: 4   PVKFTEHRNQTKLSAPFLSNPVQYSKPPKIVRISVTDTYATDSSSDEENEVSRVSSRKRH 63

Query: 64  --RVKKFLSEIMIASSSSSSEI------DVVSKSRISKCKKKKKSGKVGAPATLKPAAKQ 115
             RVKKF++EI I  S+  S        D   ++R S+  +KK    V     L   A  
Sbjct: 64  VTRVKKFVNEITIEPSAPPSRTADCVTSDTGLRARPSRSARKKVGVDVSQARRL--PATG 121

Query: 116 PAGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTN 175
             GKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRG DALTN
Sbjct: 122 VVGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGADALTN 181

Query: 176 FATPPPK 182
           F TPP +
Sbjct: 182 FVTPPAR 188

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545072|ref|XP_002513597.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223547505|gb|EEF49000.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/192 (54%), Positives = 130/192 (67%), Gaps = 25/192 (13%)

Query: 6   HSVIPPVKYTEHRKHTKLMTP-------------FSTNGQEMKPRVVRISVTDGDATDSS 52
            S++ P+K+TEH++ TK  T               S   + + PRVVRISVTD DATDSS
Sbjct: 4   QSILCPMKFTEHKRITKKYTKPSLKPKKPSSDERSSCRLEHIPPRVVRISVTDPDATDSS 63

Query: 53  SDEDCEVYKRPRVKKFLSEIMIASSSSSSEIDVVSKSRISKCKKKKKSGKVGAPAT---- 108
           SDE+ E++ R RVK++++EI I  ++S+ E ++VS  R       K++     P T    
Sbjct: 64  SDEEDELFSRQRVKRYVNEISI-EAASTKETNLVSSGR-------KRAAANELPNTTQRP 115

Query: 109 LKPAAKQPAGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLR 168
           LK       G+KFRGVRQRPWGKWAAEIRDP RRVRLWLGTYDTAEEAA+VYDNAAI+LR
Sbjct: 116 LKLNTAHSNGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAIVYDNAAIKLR 175

Query: 169 GPDALTNFATPP 180
           GPDALTNF TPP
Sbjct: 176 GPDALTNFITPP 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	193
TAIR|locus:2128429	343	CRF2 "AT4G23750" [Arabidopsis	0.906	0.510	0.510	1.3e-38
TAIR|locus:2132962	335	CRF4 "AT4G27950" [Arabidopsis	0.870	0.501	0.469	2.2e-34
TAIR|locus:2136078	287	CRF1 "AT4G11140" [Arabidopsis	0.404	0.271	0.687	3.4e-34
TAIR|locus:2154272	354	CRF3 "AT5G53290" [Arabidopsis	0.865	0.471	0.486	4.6e-34
TAIR|locus:2076720	315	CRF6 "AT3G61630" [Arabidopsis	0.388	0.238	0.666	1.6e-32
TAIR|locus:2062954	294	CRF5 "AT2G46310" [Arabidopsis	0.352	0.231	0.661	3.3e-30
TAIR|locus:505006142	159	CRF7 "AT1G22985" [Arabidopsis	0.383	0.465	0.666	4.5e-27
TAIR|locus:2026301	161	CRF8 "AT1G71130" [Arabidopsis	0.373	0.447	0.607	1e-25
TAIR|locus:2032510	189	ERF12 "ERF domain protein 12"	0.305	0.312	0.644	1.5e-19
TAIR|locus:2183861	212	Rap2.6L "related to AP2 6l" [A	0.347	0.316	0.597	3.1e-19

TAIR|locus:2128429 CRF2 "AT4G23750" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 95/186 (51%), Positives = 112/186 (60%)

Query:     1 MVNSRHSVIPPVKYTEHRKHTKLMTPFSTNGQEMKPRVVRISVTDGDATDSSSDEDCE-- 58
             M   +  V+P +K+TEH+ +T  +    TN  +   R++RISVTD DATDSSSD++ E  
Sbjct:     1 MEAEKKMVLPRIKFTEHKTNTTTIVSELTNTHQT--RILRISVTDPDATDSSSDDEEEEH 58

Query:    59 ---VYKRPRVKKFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAPATLKPAAKQ 115
                V KR RVKKF+                                 V +P     A   
Sbjct:    59 QRFVSKRRRVKKFVNEVYLDSGAVVTGSCGQMESKKRQKRAVKSESTV-SPVV--SATTT 115

Query:   116 PAG-KKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALT 174
               G KKFRGVRQRPWGKWAAEIRDPL+RVRLWLGTY+TAEEAAMVYDNAAIQLRGPDALT
Sbjct:   116 TTGEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALT 175

Query:   175 NFATPP 180
             NF+  P
Sbjct:   176 NFSVTP 181

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=RCA;IDA

GO:0048825 "cotyledon development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048364 "root development" evidence=IEP

GO:0042802 "identical protein binding" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=RCA

TAIR|locus:2132962 CRF4 "AT4G27950" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 85/181 (46%), Positives = 105/181 (58%)

Query:    11 PVKYTEH----RKHTKLMTPFSTNGQEMKPRVVRISVTDGDATDSSSDEDCEVYKRPRVK 66
             PVKYTEH    RK+TK  +           R+VR+S+TD DATDSSSDE+  ++ R RVK
Sbjct:    11 PVKYTEHKTVIRKYTKKSSMERKTSVRDSARLVRVSMTDRDATDSSSDEEEFLFPRRRVK 70

Query:    67 KFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAPATL-KPAAKQPAGKKFRGVR 125
             + +                                 +   +T+ KP+      KK+RGVR
Sbjct:    71 RLINEIRVEPSSSSTGDVSASPTKDRKR--------INVDSTVQKPSVSGQNQKKYRGVR 122

Query:   126 QRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPPPKFPS 185
             QRPWGKWAAEIRDP +R R+WLGT+ TAEEAA+VYDNAAI+LRGPDALTNF   P   P 
Sbjct:   123 QRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQPEPEPV 182

Query:   186 Q 186
             Q
Sbjct:   183 Q 183

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=IDA

GO:0048366 "leaf development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2136078 CRF1 "AT4G11140" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
 Identities = 55/80 (68%), Positives = 64/80 (80%)

Query:   111 PAAKQPAGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGP 170
             P     A +KFRGVRQRPWGKWAAEIRDP RRVR+WLGT+DTAEEAA+VYDNAAIQLRGP
Sbjct:    77 PVVVTTATRKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGP 136

Query:   171 DALTNFATPPPKFPSQIKQS 190
             +A  NF  PPP     ++++
Sbjct:   137 NAELNF--PPPPVTENVEEA 154

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=RCA;IDA

GO:0048366 "leaf development" evidence=RCA;IMP

GO:0048825 "cotyledon development" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

GO:0051301 "cell division" evidence=RCA

TAIR|locus:2154272 CRF3 "AT5G53290" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 87/179 (48%), Positives = 108/179 (60%)

Query:    11 PVKYTEHR----KHTKLMTPFSTNGQEMKPRVVRISVTDGDATDSSSDEDCE--VYKRPR 64
             P+KYTEH+    K+TK  +   + G+ +K   V I  TD DATDSSSDED E  ++ R R
Sbjct:     9 PLKYTEHKTSMTKYTKKSSEKLSGGKSLKK--VSICYTDPDATDSSSDEDEEDFLFPRRR 66

Query:    65 VKKFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAPATLKPAAK-QPAG--KKF 121
             VK+F+                                   A +  +P  K   +G  KKF
Sbjct:    67 VKRFVNEITVEPSCNNVVTGVSMKDRKRLSSSSDETQSP-ASSRQRPNNKVSVSGQIKKF 125

Query:   122 RGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPP 180
             RGVRQRPWGKWAAEIRDP +R R+WLGT++TAEEAA+VYDNAAI+LRGPDALTNF+ PP
Sbjct:   126 RGVRQRPWGKWAAEIRDPEQRRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSIPP 184

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042991 "transcription factor import into nucleus" evidence=IDA

GO:0048366 "leaf development" evidence=IMP

GO:0048825 "cotyledon development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

TAIR|locus:2076720 CRF6 "AT3G61630" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
 Identities = 50/75 (66%), Positives = 59/75 (78%)

Query:   119 KKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFAT 178
             KK+RGVRQRPWGK+AAEIRDP  R R+WLGT+ TAEEAA+ YD AAI L+GP ALTNF T
Sbjct:   103 KKYRGVRQRPWGKFAAEIRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLT 162

Query:   179 PPPKFPSQIKQSLSS 193
             PP   P    Q++S+
Sbjct:   163 PPTPTPVIDLQTVSA 177

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0042991 "transcription factor import into nucleus" evidence=RCA;IDA

GO:0048366 "leaf development" evidence=IMP

GO:0048825 "cotyledon development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2062954 CRF5 "AT2G46310" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
 Identities = 45/68 (66%), Positives = 56/68 (82%)

Query:   120 KFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATP 179
             K+RGVRQRPWGK+AAEIRDP  R RLWLGT+ TAEEAA+ YD AAI+++G +A TNF TP
Sbjct:    98 KYRGVRQRPWGKFAAEIRDPSSRTRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNFLTP 157

Query:   180 PPKFPSQI 187
             PP   +++
Sbjct:   158 PPSPTTEV 165

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0042991 "transcription factor import into nucleus" evidence=RCA;IDA

GO:0048366 "leaf development" evidence=IMP

GO:0048825 "cotyledon development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:505006142 CRF7 "AT1G22985" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
 Identities = 52/78 (66%), Positives = 57/78 (73%)

Query:   106 PATLKPAAKQPAGKK-FRGVRQRPWGKWAAEIRDPL---RRVRLWLGTYDTAEEAAMVYD 161
             PA+L  A    A KK FRGVRQRPWGKWAAEIR      R  R+WLGT++TAEEAA+ YD
Sbjct:    59 PASLLAARNTTANKKKFRGVRQRPWGKWAAEIRCGRVKGRPERIWLGTFETAEEAALAYD 118

Query:   162 NAAIQLRGPDALTNFATP 179
             NAAIQL GPDA TNF  P
Sbjct:   119 NAAIQLIGPDAPTNFGRP 136

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2026301 CRF8 "AT1G71130" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
 Identities = 48/79 (60%), Positives = 54/79 (68%)

Query:   106 PATLKPAAKQPAGKKFRGVRQRPWGKWAAEIRDPL-----RRVRLWLGTYDTAEEAAMVY 160
             PA     AK    KK+RGVRQRPWGKW AEIR        RR RLWLGT++TAEEAA+ Y
Sbjct:    66 PAEFLKTAKTE--KKYRGVRQRPWGKWVAEIRCGRGACKGRRDRLWLGTFNTAEEAALAY 123

Query:   161 DNAAIQLRGPDALTNFATP 179
             DNA+I+L GP A TNF  P
Sbjct:   124 DNASIKLIGPHAPTNFGLP 142

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2032510 ERF12 "ERF domain protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
 Identities = 38/59 (64%), Positives = 48/59 (81%)

Query:   121 FRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATP 179
             +RGVR+RPWG++AAEIRDP ++ R+WLGT+DT EEAA+ YD AA  LRG  A TNF +P
Sbjct:    12 YRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFPSP 70

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2183861 Rap2.6L "related to AP2 6l" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 40/67 (59%), Positives = 51/67 (76%)

Query:   110 KPAAKQPAGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRG 169
             +P   QP  + +RGVRQRPWGKWAAEIRDP +  R+WLGT++TAEEAA+ YD AA++ +G
Sbjct:    28 QPDQDQPRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKG 87

Query:   170 PDALTNF 176
               A  NF
Sbjct:    88 TKAKLNF 94

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0071497 "cellular response to freezing" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	193
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	7e-34
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	3e-32
pfam00847	53	pfam00847, AP2, AP2 domain	1e-12

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  114 bits (288), Expect = 7e-34
 Identities = 39/62 (62%), Positives = 44/62 (70%)

Query: 120 KFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATP 179
           K+RGVRQRPWGKW AEIRDP +  R+WLGT+DTAEEAA  YD AA + RG  A  NF   
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Query: 180 PP 181
             
Sbjct: 61  LY 62

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  110 bits (277), Expect = 3e-32
 Identities = 40/59 (67%), Positives = 46/59 (77%)

Query: 119 KKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFA 177
            K+RGVRQRPWGKW AEIRDP    R+WLGT+DTAEEAA  YD AA++LRG  A+ NF 
Sbjct: 1   SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 59.6 bits (145), Expect = 1e-12
 Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 119 KKFRGVRQRP-WGKWAAEIRDP--LRRVRLWLGTYDTAEEAAMVYDNAAIQLRG 169
             ++GVR    WG+W AEIRDP   ++ R  LGT+ T EEAA     A ++LRG
Sbjct: 1   SGYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	193
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.84
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.82
PHA00280	121	putative NHN endonuclease	99.44
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.18
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	86.22

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.84  E-value=5.1e-21  Score=132.41  Aligned_cols=61  Identities=66%  Similarity=1.170  Sum_probs=57.5

Q ss_pred             CceeeEEECCCCcEEEEEecCCCCeEeecCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 036154          119 KKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATP  179 (193)
Q Consensus       119 S~yRGVr~r~~GkW~A~I~~~~~~kri~LGtfdT~EeAA~AYD~Aa~~~~G~~A~~NFp~~  179 (193)
                      |+|+||+++++|+|+|+|+++..++++|||+|+|+||||.|||.+++.++|.++.+|||.+
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899998888899999999976699999999999999999999999999999999999964

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.82  E-value=3e-20  Score=130.15  Aligned_cols=63  Identities=62%  Similarity=1.077  Sum_probs=59.3

Q ss_pred             ceeeEEECCCCcEEEEEecCCCCeEeecCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCCCCC
Q 036154          120 KFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATPPPK  182 (193)
Q Consensus       120 ~yRGVr~r~~GkW~A~I~~~~~~kri~LGtfdT~EeAA~AYD~Aa~~~~G~~A~~NFp~~~~~  182 (193)
                      +|+||+++++|+|+|+|+++..++.+|||+|+|+||||.|||.+++.++|.++.+|||.+.+.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599998888999999999998999999999999999999999999999999999999987653

>PHA00280 putative NHN endonuclease

Probab=99.44  E-value=2.5e-13  Score=107.25  Aligned_cols=56  Identities=16%  Similarity=0.255  Sum_probs=51.5

Q ss_pred             CCCCCceeeE-EECCCCcEEEEEecCCCCeEeecCCCCCHHHHHHHHHHHHHHhhCCCCC
Q 036154          115 QPAGKKFRGV-RQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDAL  173 (193)
Q Consensus       115 ~~~~S~yRGV-r~r~~GkW~A~I~~~~~~kri~LGtfdT~EeAA~AYD~Aa~~~~G~~A~  173 (193)
                      +.++|+|+|| |....|||+|+|..  .|++++||.|+++|+|+.||+ ++.+|||++|.
T Consensus        63 ~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         63 KSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            5789999999 68889999999998  999999999999999999997 77889999884

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.18  E-value=5.3e-11  Score=80.27  Aligned_cols=52  Identities=31%  Similarity=0.480  Sum_probs=45.7

Q ss_pred             CceeeE-EECCCCcEEEEEecCCC---CeEeecCCCCCHHHHHHHHHHHHHHhhCC
Q 036154          119 KKFRGV-RQRPWGKWAAEIRDPLR---RVRLWLGTYDTAEEAAMVYDNAAIQLRGP  170 (193)
Q Consensus       119 S~yRGV-r~r~~GkW~A~I~~~~~---~kri~LGtfdT~EeAA~AYD~Aa~~~~G~  170 (193)
                      |+|+|| +.+..++|.|+|+++..   ++.++||.|++++||+.||+.++..++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            689999 57889999999998432   49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=86.22  E-value=3.3  Score=26.83  Aligned_cols=38  Identities=16%  Similarity=0.179  Sum_probs=30.1

Q ss_pred             cEEEEE--ecCCCC--eEeecCCCCCHHHHHHHHHHHHHHhh
Q 036154          131 KWAAEI--RDPLRR--VRLWLGTYDTAEEAAMVYDNAAIQLR  168 (193)
Q Consensus       131 kW~A~I--~~~~~~--kri~LGtfdT~EeAA~AYD~Aa~~~~  168 (193)
                      +|...|  .++..|  ++++-+.|.|..||..+...+...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            588888  355444  77899999999999999988776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	193
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-17
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		2e-16

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 49/60 (81%), Gaps = 1/60 (1%)
Query: 118 GKKFRGVRQRPWGKWAAEIRDPLRR-VRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNF 176
           GK +RGVRQRPWGK+AAEIRDP +   R+WLGT++TAE+AA+ YD AA ++RG  AL NF
Sbjct: 3   GKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 62

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 48/59 (81%), Gaps = 1/59 (1%)
Query: 119 KKFRGVRQRPWGKWAAEIRDPLRR-VRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNF 176
           K +RGVRQRPWGK+AAEIRDP +   R+WLGT++TAE+AA+ YD AA ++RG  AL NF
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	193
1gcc_A	63	Ethylene responsive element binding factor 1; tran	1e-35

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  118 bits (298), Expect = 1e-35
 Identities = 38/59 (64%), Positives = 48/59 (81%), Gaps = 1/59 (1%)

Query: 119 KKFRGVRQRPWGKWAAEIRDPLRR-VRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNF 176
           K +RGVRQRPWGK+AAEIRDP +   R+WLGT++TAE+AA+ YD AA ++RG  AL NF
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	193
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.91
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	88.81
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	80.19

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.91  E-value=3e-25  Score=155.40  Aligned_cols=60  Identities=62%  Similarity=1.146  Sum_probs=57.0

Q ss_pred             ceeeEEECCCCcEEEEEecCCC-CeEeecCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 036154          120 KFRGVRQRPWGKWAAEIRDPLR-RVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATP  179 (193)
Q Consensus       120 ~yRGVr~r~~GkW~A~I~~~~~-~kri~LGtfdT~EeAA~AYD~Aa~~~~G~~A~~NFp~~  179 (193)
                      +|+||++++||||+|+|++|.. ++++|||+|+|+||||+|||.|++.++|.+|.+|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999988899999999999875 79999999999999999999999999999999999975

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=88.81  E-value=0.32  Score=34.90  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=20.5

Q ss_pred             CCCceeeE-EECCCCcEEEEEecC
Q 036154          117 AGKKFRGV-RQRPWGKWAAEIRDP  139 (193)
Q Consensus       117 ~~S~yRGV-r~r~~GkW~A~I~~~  139 (193)
                      ..|+|.|| |..+.+.|.|.-.+.
T Consensus         4 ~~Sg~pGVsw~kR~~~WlA~W~e~   27 (77)
T 3igm_B            4 MSSGYPGVSWNKRMCAWLAFFYDG   27 (77)
T ss_dssp             CCSSSTTEEEETTTTEEEEEEEET
T ss_pred             CCCCCCcEEeecCCceEEEEEecC
Confidence            57899999 799999999999984

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=80.19  E-value=0.25  Score=39.01  Aligned_cols=38  Identities=8%  Similarity=-0.156  Sum_probs=27.7

Q ss_pred             eeeEEECCCCcEEEEEecCCCCeEeecCCCCCHHHHHHHHH
Q 036154          121 FRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYD  161 (193)
Q Consensus       121 yRGVr~r~~GkW~A~I~~~~~~kri~LGtfdT~EeAA~AYD  161 (193)
                      ++||.....++|.+.|..  . +.++||.|+|.+|||++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence            356622334568888887  3 4568999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	193
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-29

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  101 bits (253), Expect = 2e-29
 Identities = 38/59 (64%), Positives = 48/59 (81%), Gaps = 1/59 (1%)

Query: 119 KKFRGVRQRPWGKWAAEIRDPLR-RVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNF 176
           K +RGVRQRPWGK+AAEIRDP +   R+WLGT++TAE+AA+ YD AA ++RG  AL NF
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	193
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.91

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=3.4e-25  Score=153.91  Aligned_cols=60  Identities=62%  Similarity=1.133  Sum_probs=55.9

Q ss_pred             ceeeEEECCCCcEEEEEecCC-CCeEeecCCCCCHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 036154          120 KFRGVRQRPWGKWAAEIRDPL-RRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFATP  179 (193)
Q Consensus       120 ~yRGVr~r~~GkW~A~I~~~~-~~kri~LGtfdT~EeAA~AYD~Aa~~~~G~~A~~NFp~~  179 (193)
                      +||||+++++|||.|+|++|. +++++|||+|+|+||||+|||.|++.++|.+|.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            599998888999999999975 558999999999999999999999999999999999964