Citrus Sinensis ID: 036215

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
MRNPSSSSSSDGTKKITPCCSKVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRKKLISQGINPTTHKPLIFNQVVHDQLASSSSTSNPNTPSLEIMEEAGVSSTHQAAATNFTTNYNIPIDGGFMMGSLLPSSHGHGHNCIGDYIDNCDEDTFSSFLDSLVNDDDFMNHINEQQQQSSVSSYNNIGTIDWEFADVLSTKVGSDDQHGAAASLNDQL
cccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHcccccccccccccccHHHHHHHHHHHHHHccHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHHccccccccccccHHHHcccc
ccccccccccccccccccccHHcccccccccHHHHHHHHHHHHHcccccccHccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHcccccccccccccccccccccccccccccccccHcccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccHHHcHHHcccccccccccccccccccc
mrnpssssssdgtkkitpccskvgikkgpwtpeeDEILSNYIKRegegqwrtlpkragllrcgksCRLRWMNylrpsikrghiapdEEDLILRLHRLLGNRwsliagripgrtdneiKNYWNTRLRKKLIsqginptthkplifnqvvhdqlasssstsnpntpsleimeeagvssthqaaatnfttnynipidggfmmgsllpsshghghncigdyidncdedtfssfldslvndddfmnhineqqqqssvssynnigtiDWEFADVLstkvgsddqhgaaaslndql
mrnpssssssdgtkkitpccskvgikkgpwtpeeDEILSNYikregegqwrtlpkragllrcgkscrLRWMNYlrpsikrghiapDEEDLILRLHRLLGNRWsliagripgrtdneikNYWNTRLRKKLISQGINPTTHKPLIFNQVVHDQLASSSSTSNPNTPSLEIMEEAGVSSTHQAAATNFTTNYNIPIDGGFMMGSLLPSSHGHGHNCIGDYIDNCDEDTFSSFLDSLVNDDDFMNHINEQQQQSSVSSYNNIGTIDWEFADVLSTKVGSDDQHGAAASLNDQL
MRNPssssssDGTKKITPCCSKVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRKKLISQGINPTTHKPLIFNQVVHDQLAsssstsnpntpsLEIMEEAGVSSTHQAAATNFTTNYNIPIDGGFMMGSLLPSSHGHGHNCIGDYIDNCDEDTFSSFLDSLVNDDDFMNHINEqqqqssvssYNNIGTIDWEFADVLSTKVGSDDQHGAAASLNDQL
****************TPCCSKVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRKKLISQGINPTTHKPLIFNQVVH********************************ATNFTTNYNIPIDGGFMMGSLLPSSHGHGHNCIGDYIDNCDEDTFSSFLDSLVNDDDFMNH***********SYNNIGTIDWEFADVLST******************
*******************CSKVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRKKLIS*****************************************************************************************CDEDTFSSFLDSLVNDDDF******************IGTIDWEFADVLSTKV*********AS*N***
**************KITPCCSKVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRKKLISQGINPTTHKPLIFNQVVHD************TPSLEIMEEAGVSSTHQAAATNFTTNYNIPIDGGFMMGSLLPSSHGHGHNCIGDYIDNCDEDTFSSFLDSLVNDDDFMNHINE********SYNNIGTIDWEFADVLSTKV****************
****************TPCCSKVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRKKLISQGINPTTHK********************************************************************HGHNCIGDYIDNCDEDTFSSFLDSLVNDDDFMNHI**********S**NI*******************************
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MRNPSSSSSSDGTKKITPCCSKVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRKKLISQGINPTTHKPLIFNQVVHDQLASSSSTSNPNTPSLEIMEEAGVSSTHQAAATNFTTNYNIPIDGGFMMGSLLPSSHGHGHNCIGDYIDNCDEDTFSSFLDSLVNDDDFMNHINEQQQQSSVSSYNNIGTIDWEFADVLSTKVGSDDQHGAAASLNDQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query289 2.2.26 [Sep-21-2011]
Q38850249 Transcription repressor M yes no 0.716 0.831 0.578 3e-67
Q9SZP1282 Transcription repressor M no no 0.574 0.588 0.548 5e-51
P81393232 Myb-related protein 308 O N/A no 0.543 0.676 0.575 5e-50
P20025255 Myb-related protein Zm38 N/A no 0.494 0.560 0.608 5e-49
Q9S9K9257 Transcription factor MYB3 no no 0.577 0.649 0.483 5e-49
Q38851236 Transcription repressor M no no 0.474 0.580 0.613 7e-49
Q8LPH6352 Transcription factor MYB8 no no 0.595 0.488 0.544 1e-48
P20026267 Myb-related protein Hv1 O N/A no 0.435 0.471 0.666 3e-48
Q8GWP0360 Transcription factor MYB3 no no 0.432 0.347 0.666 2e-47
P81395274 Myb-related protein 330 O N/A no 0.435 0.459 0.650 2e-47
>sp|Q38850|MYB5_ARATH Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1 Back     alignment and function desciption
 Score =  255 bits (651), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 137/237 (57%), Positives = 162/237 (68%), Gaps = 30/237 (12%)

Query: 13  TKKITPCCSKVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMN 72
           +KK TPCC+K+G+K+GPWT EEDEIL ++IK+EGEG+WR+LPKRAGLLRCGKSCRLRWMN
Sbjct: 11  SKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMN 70

Query: 73  YLRPSIKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRKKLISQ 132
           YLRPS+KRG I  DEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNT LRKKL+ Q
Sbjct: 71  YLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQ 130

Query: 133 GINPTTHKPLIFNQVVHDQLASSSSTSNPNTPSLEIMEEAGVSSTHQAAAT----NFTTN 188
           GI+P THKPL  N +   +   S     P  P         +SS+H    T    +  + 
Sbjct: 131 GIDPQTHKPLDANNIHKPEEEVSGGQKYPLEP---------ISSSHTDDTTVNGGDGDSK 181

Query: 189 YNIPIDGGFMMGSLLPSSHGHGHNCIGDYIDNCDEDTFSSFLDSLVND--DDFMNHI 243
            +I + GG            HG+   G     C +D FSSFL+SL+ND  D F N I
Sbjct: 182 NSINVFGG-----------EHGYEDFG----FCYDDKFSSFLNSLINDVGDPFGNII 223
Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1 Back     alignment and function description
>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1 Back     alignment and function description
>sp|P20025|MYB38_MAIZE Myb-related protein Zm38 OS=Zea mays PE=2 SV=1 Back     alignment and function description
>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1 Back     alignment and function description
>sp|Q38851|MYB6_ARATH Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1 Back     alignment and function description
>sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1 Back     alignment and function description
>sp|P20026|MYB1_HORVU Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1 Back     alignment and function description
>sp|P81395|MYB30_ANTMA Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query289
224144810293 predicted protein [Populus trichocarpa] 0.809 0.798 0.634 2e-77
224144812309 predicted protein [Populus trichocarpa] 0.813 0.760 0.597 1e-75
45593281320 Myb transcription factor [Vitis vinifera 0.799 0.721 0.581 3e-75
225441587320 PREDICTED: transcription repressor MYB5 0.788 0.712 0.583 1e-74
224153796308 predicted protein [Populus trichocarpa] 0.799 0.75 0.607 2e-74
224125834304 predicted protein [Populus trichocarpa] 0.837 0.796 0.598 2e-74
224125838308 predicted protein [Populus trichocarpa] 0.799 0.75 0.599 1e-73
145306603265 Myb-like protein P [Fagopyrum cymosum] g 0.782 0.852 0.577 3e-72
61661400311 MYB5b [Vitis vinifera] 0.982 0.913 0.538 4e-72
381392353308 putative MYB transcription factor [Vitis 0.965 0.905 0.532 5e-72
>gi|224144810|ref|XP_002325423.1| predicted protein [Populus trichocarpa] gi|222862298|gb|EEE99804.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  294 bits (753), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 153/241 (63%), Positives = 175/241 (72%), Gaps = 7/241 (2%)

Query: 1   MRNPSSSSSSDGTKKITPCCSKVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLL 60
           MRN  S++S+      TPCCSKVGIKKGPWTPEEDE+L+NYI++EGEG+WRTLPKRAGLL
Sbjct: 1   MRNLCSTTSTRSRSVPTPCCSKVGIKKGPWTPEEDELLANYIRKEGEGRWRTLPKRAGLL 60

Query: 61  RCGKSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNY 120
           RCGKSCRLRWMNYLRPS+KRG IAPDEEDLILRLHRLLGNRWS+IAGRIPGRTDNEIKNY
Sbjct: 61  RCGKSCRLRWMNYLRPSVKRGRIAPDEEDLILRLHRLLGNRWSMIAGRIPGRTDNEIKNY 120

Query: 121 WNTRLRKKLISQGINPTTHKPLIFNQVVHDQLASSSSTSNPNTPSLEIMEEAGVSSTHQA 180
           WNT L KKLISQGI+P THKPL  N    +        SNP +  L   +E G      A
Sbjct: 121 WNTCLSKKLISQGIDPRTHKPLKPNPDSSEIANVPVQNSNPKSSPL---DENGRVYRTVA 177

Query: 181 AATNFTTNYNIPIDGGFMMGSLLPSSHGHGHNCIGDYIDNC-DEDTFSSFLDSLVNDDDF 239
                    N P   GF MGSL     GHG     D+I++  +EDTFSSFLDSL+N++ F
Sbjct: 178 TRVAAGATENWPNRDGFTMGSL---QSGHGRKNEDDFIEDIGNEDTFSSFLDSLLNENVF 234

Query: 240 M 240
           +
Sbjct: 235 V 235

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224144812|ref|XP_002325424.1| predicted protein [Populus trichocarpa] gi|222862299|gb|EEE99805.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|45593281|gb|AAS68190.1| Myb transcription factor [Vitis vinifera] Back     alignment and taxonomy information
>gi|225441587|ref|XP_002281643.1| PREDICTED: transcription repressor MYB5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224153796|ref|XP_002337399.1| predicted protein [Populus trichocarpa] gi|222838973|gb|EEE77324.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224125834|ref|XP_002319686.1| predicted protein [Populus trichocarpa] gi|222858062|gb|EEE95609.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224125838|ref|XP_002319687.1| predicted protein [Populus trichocarpa] gi|222858063|gb|EEE95610.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|145306603|gb|ABP57069.1| Myb-like protein P [Fagopyrum cymosum] gi|145306605|gb|ABP57070.1| Myb-like protein P [Fagopyrum cymosum] Back     alignment and taxonomy information
>gi|61661400|gb|AAX51291.1| MYB5b [Vitis vinifera] Back     alignment and taxonomy information
>gi|381392353|gb|AFG28177.1| putative MYB transcription factor [Vitis bellula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query289
TAIR|locus:2092820249 MYB5 "myb domain protein 5" [A 0.467 0.542 0.807 3.3e-65
TAIR|locus:2098906299 MYB17 "myb domain protein 17" 0.435 0.421 0.690 1.8e-52
TAIR|locus:2121259282 MYB4 "myb domain protein 4" [A 0.435 0.446 0.682 1.1e-48
TAIR|locus:2075387321 MYB107 "myb domain protein 107 0.432 0.389 0.68 1.4e-48
TAIR|locus:2133677236 MYB6 "myb domain protein 6" [A 0.619 0.758 0.502 4.7e-48
TAIR|locus:2173562295 MYB34 "myb domain protein 34" 0.435 0.427 0.642 4.7e-48
TAIR|locus:2009452257 MYB3 "myb domain protein 3" [A 0.453 0.509 0.636 1.2e-47
TAIR|locus:2059883269 MYB7 "myb domain protein 7" [A 0.429 0.460 0.669 4.2e-47
TAIR|locus:2149000336 MYB9 "myb domain protein 9" [A 0.432 0.372 0.664 5.4e-47
TAIR|locus:2141231350 MYB102 "MYB-like 102" [Arabido 0.432 0.357 0.664 6.9e-47
TAIR|locus:2092820 MYB5 "myb domain protein 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 616 (221.9 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
 Identities = 109/135 (80%), Positives = 123/135 (91%)

Query:    13 TKKITPCCSKVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMN 72
             +KK TPCC+K+G+K+GPWT EEDEIL ++IK+EGEG+WR+LPKRAGLLRCGKSCRLRWMN
Sbjct:    11 SKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMN 70

Query:    73 YLRPSIKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRKKLISQ 132
             YLRPS+KRG I  DEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNT LRKKL+ Q
Sbjct:    71 YLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQ 130

Query:   133 GINPTTHKPLIFNQV 147
             GI+P THKPL  N +
Sbjct:   131 GIDPQTHKPLDANNI 145
GO:0003677 "DNA binding" evidence=IEA;ISS;TAS
GO:0005634 "nucleus" evidence=ISM
GO:0009845 "seed germination" evidence=NAS
GO:0010026 "trichome differentiation" evidence=NAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0010090 "trichome morphogenesis" evidence=IMP
GO:0010214 "seed coat development" evidence=IMP
GO:0010468 "regulation of gene expression" evidence=IEP
GO:0048354 "mucilage biosynthetic process involved in seed coat development" evidence=IMP
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
TAIR|locus:2098906 MYB17 "myb domain protein 17" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121259 MYB4 "myb domain protein 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075387 MYB107 "myb domain protein 107" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133677 MYB6 "myb domain protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173562 MYB34 "myb domain protein 34" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009452 MYB3 "myb domain protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059883 MYB7 "myb domain protein 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149000 MYB9 "myb domain protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141231 MYB102 "MYB-like 102" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q38850MYB5_ARATHNo assigned EC number0.57800.71620.8313yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
MybCs1
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (320 aa)
(Vitis vinifera)
Predicted Functional Partners:
ban
SubName- Full=Putative anthocyanidin reductase (Chromosome undetermined scaffold_1029, whole ge [...] (338 aa)
      • 0.480

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query289
PLN03212249 PLN03212, PLN03212, Transcription repressor MYB5; 8e-84
PLN03091 459 PLN03091, PLN03091, hypothetical protein; Provisio 6e-54
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 4e-15
COG5147 512 COG5147, REB1, Myb superfamily proteins, including 8e-14
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 2e-12
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 7e-11
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 3e-10
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 4e-10
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 1e-09
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 8e-08
pfam1392159 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do 2e-05
>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional Back     alignment and domain information 
 Score =  251 bits (643), Expect = 8e-84
 Identities = 136/233 (58%), Positives = 160/233 (68%), Gaps = 22/233 (9%)

Query: 13  TKKITPCCSKVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMN 72
           +KK TPCC+K+G+K+GPWT EEDEIL ++IK+EGEG+WR+LPKRAGLLRCGKSCRLRWMN
Sbjct: 11  SKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMN 70

Query: 73  YLRPSIKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRKKLISQ 132
           YLRPS+KRG I  DEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNT LRKKL+ Q
Sbjct: 71  YLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQ 130

Query: 133 GINPTTHKPLIFNQVVHDQLASSSSTSNPNTPSLEIMEEAGVSSTHQAAATNFTTNYNIP 192
           GI+P THKPL  N +   +   S     P  P         +SS+H       T +  + 
Sbjct: 131 GIDPQTHKPLDANNIHKPEEEVSGGQKYPIEP---------ISSSH-------TDDTTVN 174

Query: 193 IDGGFMMGSLLPSSHGHGHNCIGDYIDNCDEDTFSSFLDSLVND--DDFMNHI 243
              G    S+      HG+   G     C +D FSSFL+SL+ND  D F N I
Sbjct: 175 GGDGDSKNSINVFGGEHGYEDFG----FCYDDKFSSFLNSLINDDADPFGNII 223

Length = 249
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 289
PLN03212249 Transcription repressor MYB5; Provisional 100.0
PLN03091 459 hypothetical protein; Provisional 100.0
KOG0048238 consensus Transcription factor, Myb superfamily [T 100.0
KOG0049 939 consensus Transcription factor, Myb superfamily [T 99.75
KOG0049 939 consensus Transcription factor, Myb superfamily [T 99.68
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 99.62
COG5147 512 REB1 Myb superfamily proteins, including transcrip 99.6
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 99.52
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 99.43
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.43
KOG0051607 consensus RNA polymerase I termination factor, Myb 99.42
PLN03212249 Transcription repressor MYB5; Provisional 99.41
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 99.35
KOG0048238 consensus Transcription factor, Myb superfamily [T 99.31
PLN03091 459 hypothetical protein; Provisional 99.28
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 99.27
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 99.14
KOG0051607 consensus RNA polymerase I termination factor, Myb 99.04
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 99.0
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 98.84
COG5147512 REB1 Myb superfamily proteins, including transcrip 98.43
KOG0050 617 consensus mRNA splicing protein CDC5 (Myb superfam 97.87
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 97.7
TIGR0155757 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c 97.69
PF13325199 MCRS_N: N-terminal region of micro-spherule protei 97.51
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 97.48
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 97.46
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 97.32
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 97.15
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 97.14
KOG1279506 consensus Chromatin remodeling factor subunit and 96.58
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 96.48
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 96.43
KOG1279506 consensus Chromatin remodeling factor subunit and 96.3
PF0891465 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150 96.11
PRK13923170 putative spore coat protein regulator protein YlbO 96.04
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 95.82
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 95.77
COG5114 432 Histone acetyltransferase complex SAGA/ADA, subuni 95.59
COG5114 432 Histone acetyltransferase complex SAGA/ADA, subuni 95.57
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 95.34
PLN031421033 Probable chromatin-remodeling complex ATPase chain 94.52
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 94.18
KOG2656445 consensus DNA methyltransferase 1-associated prote 93.87
KOG4282345 consensus Transcription factor GT-2 and related pr 93.38
PRK13923170 putative spore coat protein regulator protein YlbO 93.04
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 92.09
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 91.6
KOG1194 534 consensus Predicted DNA-binding protein, contains 89.73
PF0828154 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013 89.4
COG5118507 BDP1 Transcription initiation factor TFIIIB, Bdp1 88.96
KOG4282345 consensus Transcription factor GT-2 and related pr 80.94
PF09111118 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain 80.34
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information 
Probab=100.00  E-value=4.7e-48  Score=349.43  Aligned_cols=134  Identities=81%  Similarity=1.450  Sum_probs=126.2

Q ss_pred             CCCCCCccCCCCCccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccccCCCCCCCCCCHHHHHHHH
Q 036215           13 TKKITPCCSKVGIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPDEEDLIL   92 (289)
Q Consensus        13 ~~~~~~c~~k~~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll   92 (289)
                      +..++|||.|++++|++||+|||++|+++|++||..+|..||+.++.+|+++|||+||.+||+|.+++++||+|||++|+
T Consensus        11 ~~~~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLl   90 (249)
T PLN03212         11 SKKTTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLIL   90 (249)
T ss_pred             CCCCCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHH
Confidence            44577999999999999999999999999999999899999999975699999999999999999999999999999999


Q ss_pred             HHHHhhCCchhhhhccCCCCCHHHHHHHHHHHhhhhhhhCCCCCCCCccccccc
Q 036215           93 RLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRKKLISQGINPTTHKPLIFNQ  146 (289)
Q Consensus        93 ~lv~~~G~kWs~IA~~lpgRT~~q~knRW~~~lrk~~~~~~~~~~~~k~l~~~~  146 (289)
                      +++.+||++|+.||+.|||||+++|||||+.++++++.+.++.+.+++++....
T Consensus        91 el~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp~~~~~  144 (249)
T PLN03212         91 RLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDANN  144 (249)
T ss_pred             HHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCCCCccc
Confidence            999999999999999999999999999999999999999999999888765443

>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class Back     alignment and domain information
>PF13325 MCRS_N: N-terminal region of micro-spherule protein Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription] Back     alignment and domain information
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription Back     alignment and domain information
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription] Back     alignment and domain information
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query289
1a5j_A110 Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe 1e-21
1h8a_C128 Crystal Structure Of Ternary Protein-Dna Complex3 L 2e-20
1h88_C159 Crystal Structure Of Ternary Protein-Dna Complex1 L 3e-20
1mse_C105 Solution Structure Of A Specific Dna Complex Of The 3e-20
1gv2_A105 Crystal Structure Of C-Myb R2r3 Length = 105 4e-20
3zqc_A131 Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin 2e-18
3osf_A126 The Structure Of Protozoan Parasite Trichomonas Vag 3e-12
1mbj_A53 Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53 9e-09
1idy_A54 Structure Of Myb Transforming Protein, Nmr, Minimiz 2e-08
2k9n_A107 Solution Nmr Structure Of The R2r3 Dna Binding Doma 4e-07
1gv5_A52 Crystal Structure Of C-Myb R2 Length = 52 2e-05
1mbg_A53 Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53 2e-05
1gvd_A52 Crystal Structure Of C-Myb R2 V103l Mutant Length = 9e-05
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110 Back     alignment and structure 
Iteration: 1

 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/103 (44%), Positives = 68/103 (66%), Gaps = 1/103 (0%)
Query: 27  KGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPD 86
           KGPWT EED+ +   +K+ G  QW TL  +    R GK CR RW N+L P +K+     +
Sbjct: 7   KGPWTKEEDQKVIELVKKYGTKQW-TLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEE 65
Query: 87  EEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRKKL 129
           E+ +I   H++LGNRW+ IA  +PGRTDN +KN+WN+ +++K+
Sbjct: 66  EDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128 Back     alignment and structure
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159 Back     alignment and structure
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105 Back     alignment and structure
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105 Back     alignment and structure
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131 Back     alignment and structure
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126 Back     alignment and structure
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53 Back     alignment and structure
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54 Back     alignment and structure
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107 Back     alignment and structure
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52 Back     alignment and structure
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53 Back     alignment and structure
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query289
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 6e-66
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 7e-64
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 1e-62
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 7e-56
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 7e-52
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 2e-51
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 2e-26
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 3e-22
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 2e-19
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 5e-15
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 2e-10
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 1e-06
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 9e-10
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 4e-09
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 3e-08
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 4e-08
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 7e-08
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 1e-07
1w0u_A55 Telomeric repeat binding factor 2; telomere, DNA-b 3e-07
1vf9_A64 Telomeric repeat binding factor 2; MYB, helix-turn 6e-07
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 1e-05
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 5e-05
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 7e-05
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 7e-04
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131 Back     alignment and structure
 Score =  201 bits (513), Expect = 6e-66
 Identities = 43/115 (37%), Positives = 66/115 (57%), Gaps = 1/115 (0%)

Query: 27  KGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPD 86
           KGP+T  ED+++  Y+K  G   W  +       R  K CR RW N+L P++ +    P+
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 87  EEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTRLRKKLISQGINPTTHKP 141
           E++ I R +  LG++WS+IA  IPGRTDN IKN WN+ + K++ +   +     P
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLP 115
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107 Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66 Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122 Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83 Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69 Back     alignment and structure
>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55 Back     alignment and structure
>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246 Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73 Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query289
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 100.0
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 100.0
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 100.0
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 100.0
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 100.0
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.97
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 99.97
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 99.87
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.85
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 99.76
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 99.75
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.72
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.72
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 99.72
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.72
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.71
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.68
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.68
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 99.67
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.65
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 99.65
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.64
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 99.64
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 99.64
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.61
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.6
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.6
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 99.57
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.57
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 99.56
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 99.31
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 99.54
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 99.54
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 99.54
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.53
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 99.52
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 99.52
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 99.51
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 99.48
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 99.46
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 99.46
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 99.45
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.43
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.4
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 99.39
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.38
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 99.37
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 99.36
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 99.36
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 99.35
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 99.35
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 99.33
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 99.28
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 98.92
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 99.26
2cjj_A93 Radialis; plant development, DNA-binding protein, 99.24
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 99.06
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 99.06
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.93
2cjj_A93 Radialis; plant development, DNA-binding protein, 98.92
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.8
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 98.69
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 98.61
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 98.58
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 98.52
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 98.49
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 98.48
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 98.35
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 98.29
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 98.29
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 98.17
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 98.12
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 98.12
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 97.34
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 97.96
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 97.87
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 97.82
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 97.81
2crg_A70 Metastasis associated protein MTA3; transcription 97.81
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 97.57
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 97.19
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 97.14
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 97.11
2crg_A70 Metastasis associated protein MTA3; transcription 96.73
4a69_C94 Nuclear receptor corepressor 2; transcription, hyd 96.71
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 96.67
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 96.52
2y9y_A374 Imitation switch protein 1 (DEL_ATPase); transcrip 96.16
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 95.15
1irz_A64 ARR10-B; helix-turn-helix, DNA binding protein; NM 95.07
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 94.47
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 93.94
1ofc_X304 ISWI protein; nuclear protein, chromatin remodelin 93.48
4b4c_A211 Chromodomain-helicase-DNA-binding protein 1; chrom 91.59
2xb0_X270 Chromo domain-containing protein 1; hydrolase, DNA 90.66
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
Probab=100.00  E-value=3.7e-35  Score=234.29  Aligned_cols=105  Identities=43%  Similarity=0.850  Sum_probs=99.6

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCcceeccccCcccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHhhCCchh
Q 036215           24 GIKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHRLLGNRWS  103 (289)
Q Consensus        24 ~lkkg~WT~EEDe~L~~~V~~~g~~~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~G~kWs  103 (289)
                      .+++|+||+|||++|+++|.+||.++|..||..|++ |+++||++||.++|+|.+++++||+|||++|++++.+||++|+
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            478999999999999999999998899999999987 9999999999999999999999999999999999999999999


Q ss_pred             hhhccCCCCCHHHHHHHHHHHhhhhh
Q 036215          104 LIAGRIPGRTDNEIKNYWNTRLRKKL  129 (289)
Q Consensus       104 ~IA~~lpgRT~~q~knRW~~~lrk~~  129 (289)
                      .||+.|||||+++|++||+.++++++
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhccC
Confidence            99999999999999999999998763
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A Back     alignment and structure
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens} Back     alignment and structure
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 289
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 1e-19
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 7e-09
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 1e-18
d2ckxa183 a.4.1.3 (A:578-660) Telomere binding protein TBP1 5e-18
d1w0ua_55 a.4.1.4 (A:) Telomeric repeat binding factor 2, TR 2e-16
d1w0ta_52 a.4.1.4 (A:) DNA-binding domain of human telomeric 4e-16
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 4e-14
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 4e-10
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 2e-12
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 2e-10
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 7e-12
d2cqra160 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 2e-06
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 2e-11
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 3e-09
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 5e-11
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 1e-10
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 6e-07
d1x41a147 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T 4e-10
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 7e-09
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 5e-06
d1ug2a_95 a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu 4e-04
d1ug2a_95 a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu 5e-04
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.8 bits (192), Expect = 1e-19
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 25 IKKGPWTPEEDEILSNYIKREGEGQWRTLPKRAGLLRCGKSCRLRWMNYLRP 76
          + KGPWT EED+ L   +++ G  +W  + K     R GK CR RW N+L P
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNP 51
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83 Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query289
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.74
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.73
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.72
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.68
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.67
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 99.66
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.59
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.58
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.52
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.52
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 99.51
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.47
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 99.44
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 99.42
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.41
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.4
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 99.37
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.32
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 99.32
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 99.29
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 99.28
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 99.23
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 99.21
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 99.2
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 99.11
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 98.83
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 98.83
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 98.67
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 98.27
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 98.18
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.74
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 97.53
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 97.5
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 97.33
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 97.0
d1fexa_59 Rap1 {Human (Homo sapiens) [TaxId: 9606]} 96.61
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 94.88
d1wgxa_73 Hypothetical protein C14orf106 (KIAA1903) {Human ( 94.84
d1irza_64 Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId 93.83
d1ofcx2128 SLIDE domain of the nucleosome remodeling ATPase I 91.24
d1ofcx152 SANT domain of the nucleosome remodeling ATPase IS 91.16
d1x58a149 Hypothetical protein 4930532d21rik {Mouse (Mus mus 85.34
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=5.9e-21  Score=146.17  Aligned_cols=71  Identities=20%  Similarity=0.243  Sum_probs=65.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC-----CcceeccccCcccCccccccccccccCCCCCCCCCCHHHHHHHHHHHHhh
Q 036215           27 KGPWTPEEDEILSNYIKREGEG-----QWRTLPKRAGLLRCGKSCRLRWMNYLRPSIKRGHIAPDEEDLILRLHRLL   98 (289)
Q Consensus        27 kg~WT~EEDe~L~~~V~~~g~~-----~W~~IA~~~~~~Rt~kqCr~Rw~n~L~p~lkrg~WT~EED~~Ll~lv~~~   98 (289)
                      |++||+|||++|+++|.+||..     +|..||..|++ |+++||++||.++|+|.+++++||++||++|++++..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpg-Rt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCC-CCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            6899999999999999999864     39999999987 99999999999999999999999999999988776544
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure