Citrus Sinensis ID: 036230

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
MEGQGSSEMQFTEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQTEFKELDMDLRPTSRRMNLSRKREIKQGIRRLEKLMNTISSLQTALRLLISEIPNIQEVIFVLGASPLRPQHIYQLYFSHGKSVSRGEPDFTKGKAAEGLSRKAIRTLISKGAGSDSYPGPTKLFLLVKASSSLSMPLHFLPKRDFRYSKKIVPFRLRFKCKMQDKAMDDYASQACSPNLRDYTSDDLIWFQCRHIIKGIAFKTPAEE
Secondary Structure (PSIPRED)
cccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEcccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEcccccccccccccccccccccEEEEEEEEEEEEEccccccccccccccccccccccccEEEEEccEEEEcccccccccc
Coil and Loop (DISEMBL)
megqgssemqFTEIEtnagsldssVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQTEFKEldmdlrptsrrmnlSRKREIKQGIRRLEKLMNTISSLQTALRLLISEIPNIQEVIFVlgasplrpqHIYQLYFshgksvsrgepdftkgkaaeGLSRKAIRTLIskgagsdsypgpTKLFLLVKAssslsmplhflpkrdfryskkivpfRLRFKCKMQDKAMDDYasqacspnlrdytsddliWFQCRHIIkgiafktpaee
Flexible Loop (DISEMBL)
MEGQGSSEMQFTEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQTEFkeldmdlrptsrrmnlsrkreIKQGIRRLEKLMNTISSLQTALRLLISEIPNIQEVIFVLGASPLRPQHIYQLYFSHgksvsrgepdftkgkaaeglsrKAIRTLIskgagsdsypgPTKLFLLVKASSslsmplhflpkrdfryskkIVPFRLRFKCKMQDKAMDDYASQACSPNLRDYTSDDLIWFQCRHIIKGIAFKTPAEE
Low Complexity Region (SEG)
MEGQGSSEMQFTEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQTEFKELDMDLRPTSRRMNLSRKREIKQGIRRLEKLMNTISSLQTALRLLISEIPNIQEVIFVLGASPLRPQHIYQLYFSHGKSVSRGEPDFTKGKAAEGLSRKAIRTLISKGAGSDSYPGPTKLFLLVKASSSLSMPLHFLPKRDFRYSKKIVPFRLRFKCKMQDKAMDDYASQACSPNLRDYTSDDLIWFQCRHIIKGIAFKTPAEE
Disordered region (IsUnstruct)
********************LDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQTEFKE***********************IRRLEKLMNTISSLQTALRLLISEIPNIQEVIFVLGASPLRPQHIYQLYFSH****************************************PTKLFLLVKASSSLSMPLHFLPKRDFRYSKKIVPFRLRFKCKMQDKAMDDYASQACSPNLRDYTSDDLIWFQCRHIIKGIAFK*****
Disordered Region (DISOPRED)
*************IETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDA********************************RLEKLMNTISSLQTALRLLISEIPNIQEVIFVLGASPLRPQHIYQLYFSH*******************LSRKAIRTLISKGAG*DSYPGPTKLFLLVKASSSLSMPLHFLPKRDFRYSKKIVPFRLRFKCKMQDKAM****************SDDLIWFQCRHIIKG**F******
Disordered Region (DISEMBL)
**********FTEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQTEFKELDMDLRPTSRRMNLSRKREIKQGIRRLEKLMNTISSLQTALRLLISEIPNIQEVIFVLGASPLRPQHIYQLYFSHGKSVSRGEPDFTKGKAAEGLSRKAIRTLISKGAGSDSYPGPTKLFLLVKASSSLSMPLHFLPKRDFRYSKKIVPFRLRFKCKMQDKAMDDYASQACSPNLRDYTSDDLIWFQCRHIIKGIAFKTPAEE
Disordered Region (DISPRO)
*********QFTEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQTEFKELDMDLRPTSRRMNLSRKREIKQGIRRLEKLMNTISSLQTALRLLISEIPNIQEVIFVLGASPLRPQHIYQLYFSHGK****GEPDFTKGKAAEGLSRKAIRTLISKGAGSDSYPGPTKLFLLVKASSSLSMPLHFLPKRDFRYSKKIVPFRLRFKCKMQD*******************SDDLIWFQCRHIIKGIAFK*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGQGSSEMQFTEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQTEFKELDMDLRPTSRRMNLSRKREIKQGIRRxxxxxxxxxxxxxxxxxxxxxIPNIQEVIFVLGASPLRPQHIYQLYFSHGKSVSRGEPDFTKGKAAEGLSRKAIRTLISKGAGSDSYPGPTKLFLLVKASSSLSMPLHFLPKRDFRYSKKIVPFRLRFKCKMQDKAMDDYASQACSPNLRDYTSDDLIWFQCRHIIKGIAFKTPAEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
359479812	276	PREDICTED: uncharacterized protein LOC10	0.996	0.963	0.634	4e-96
449491504	269	PREDICTED: uncharacterized protein LOC10	0.970	0.962	0.587	3e-87
297843122	263	hypothetical protein ARALYDRAFT_470297 [	0.951	0.965	0.564	2e-82
79335808	265	uncharacterized protein [Arabidopsis tha	0.951	0.958	0.560	6e-82
356504924	259	PREDICTED: uncharacterized protein LOC10	0.943	0.972	0.542	1e-80
224082624	215	predicted protein [Populus trichocarpa]	0.771	0.958	0.677	4e-78
3850575	275	F15k9.21 [Arabidopsis thaliana]	0.887	0.861	0.550	4e-73
224066511	216	predicted protein [Populus trichocarpa]	0.775	0.958	0.637	1e-67
255559470	254	conserved hypothetical protein [Ricinus	0.835	0.877	0.554	3e-67
255644400	241	unknown [Glycine max]	0.782	0.867	0.562	4e-66

>gi|359479812|ref|XP_002272463.2| PREDICTED: uncharacterized protein LOC100261429 [Vitis vinifera] gi|296086737|emb|CBI32372.3| unnamed protein product [Vitis vinifera]

 Score =  356 bits (914), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 175/276 (63%), Positives = 214/276 (77%), Gaps = 10/276 (3%)

Query: 1   MEGQGSSEMQFTEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQT 60
           MEG G SEM  TEI T   S+D S++FHV+ DV GFVLYMHQQIPSILQDIS+EFDAL T
Sbjct: 1   MEG-GRSEMGVTEIVTPVDSMDCSLVFHVVKDVLGFVLYMHQQIPSILQDISVEFDALHT 59

Query: 61  EFKELDMDLRPT----SRRMNLSRKREIKQGIRRLEKLMNTISSLQTALRLLISEIPNIQ 116
           EFKEL++    T    SRR  + R RE++QGIRRL+K M+  S LQTAL+L++SE+P+IQ
Sbjct: 60  EFKELEVVPTETEVASSRRKRIGRMREVRQGIRRLQKFMDAFSGLQTALQLMLSEVPDIQ 119

Query: 117 EVIFVLGASPLRPQHIYQLYFSHGKSVSRGEPDFTKGKAAEGLSRKAIRTLISKGAGSDS 176
            +I VLGASP+RPQH+Y+  FSHG+ V  G  +F K +AAEGLSRKAIR LISKGAGS S
Sbjct: 120 GIILVLGASPIRPQHVYEFRFSHGRVVPGGACNFIKSRAAEGLSRKAIRALISKGAGSAS 179

Query: 177 YPGPTKLFLLVKASSSLSMPLHFLPKRDFRYSKKIVPFRLRFKCKMQDKAM-----DDYA 231
           Y GPTKLFLLV+ASSS ++PLHFLPKRDFRYSKKI+PFRL+ KC+ +++ M     D   
Sbjct: 180 YTGPTKLFLLVRASSSFNLPLHFLPKRDFRYSKKIIPFRLQLKCRTRNQEMDTPHHDSQT 239

Query: 232 SQACSPNLRDYTSDDLIWFQCRHIIKGIAFKTPAEE 267
           + + S NL D +SDDLIWFQCRH+IKG+A K P+ E
Sbjct: 240 ANSSSINLTDSSSDDLIWFQCRHVIKGLASKAPSME 275

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491504|ref|XP_004158919.1| PREDICTED: uncharacterized protein LOC101229071 [Cucumis sativus]

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 158/269 (58%), Positives = 206/269 (76%), Gaps = 10/269 (3%)

Query: 9   MQFTEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQTEFKEL--- 65
           M++TEIE++    DSS++F++INDV+ FVLYMHQQ+PS LQD+S+EFD L  E+KEL   
Sbjct: 1   MEYTEIESSTDCFDSSILFNIINDVSAFVLYMHQQVPSTLQDMSIEFDTLHEEYKELGSE 60

Query: 66  --DMDLRPTSRRMNLSRKREIKQGIRRLEKLMNTISSLQTALRLLISEIPNIQEVIFVLG 123
               +L+ +SRR +  R RE++QGI+R+EKLMN++S  Q A++ LISE PNI+EV+ +LG
Sbjct: 61  LEQNELKASSRRKHTGRMREVRQGIKRMEKLMNSVSGFQVAIKSLISEAPNIEEVLLILG 120

Query: 124 ASPLRPQHIYQLYFSHGKSVSRGEPDFTKGKAAEGLSRKAIRTLISKGAGSDSYPGPTKL 183
           A+PLRPQ++Y++ FSH +   RG  +F K KAAE LSRKAIRTLISK AGS SYPGPTKL
Sbjct: 121 ATPLRPQYVYEMCFSHKRFALRGADNFAKHKAAEVLSRKAIRTLISKDAGSVSYPGPTKL 180

Query: 184 FLLVKASSSLSMPLHFLPKRDFRYSKKIVPFRLRFKCKMQDKAM----DDYASQ-ACSPN 238
           FLLVKA SS ++PLHF+PKR+FRYS+KIVPF+LRFKCK Q + M     D  SQ   S +
Sbjct: 181 FLLVKAPSSFNLPLHFIPKREFRYSRKIVPFKLRFKCKAQIQQMKHPDHDRESQVGNSDD 240

Query: 239 LRDYTSDDLIWFQCRHIIKGIAFKTPAEE 267
           L + + +D IWFQCRH IKG+AF  P E+
Sbjct: 241 LTNSSVEDPIWFQCRHAIKGLAFNRPDED 269

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843122|ref|XP_002889442.1| hypothetical protein ARALYDRAFT_470297 [Arabidopsis lyrata subsp. lyrata] gi|297335284|gb|EFH65701.1| hypothetical protein ARALYDRAFT_470297 [Arabidopsis lyrata subsp. lyrata]

 Score =  311 bits (796), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 154/273 (56%), Positives = 199/273 (72%), Gaps = 19/273 (6%)

Query: 2   EGQGSSEMQF-TEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQT 60
           EG+G++E  +  +I T A SL  S +FH+IND+ GFVLYMHQQIPS++QD+SLEFD LQT
Sbjct: 3   EGEGTTEENYDVDIATTASSLGGSGVFHIINDIVGFVLYMHQQIPSVIQDMSLEFDGLQT 62

Query: 61  EFKELDMDL-----RPTSRRMNLSRKREIKQGIRRLEKLMNTISSLQTALRLLISEIPNI 115
           E  +L+ +L     +P  RR  +SRKRE+K  I++LEKLM TISSL++AL+L+I E P+I
Sbjct: 63  ELTDLEANLTQPQVKPLVRRKLVSRKREVKNEIKKLEKLMKTISSLRSALQLMIREAPDI 122

Query: 116 QEVIFVLGASPLRPQHIYQLYFS-HGKSVSRGEPDFTKGKAAEGLSRKAIRTLISKGAGS 174
           Q+V+ +LG SPLRPQ  Y+L F+ H  S+   E DF K KAAE LS+K IR LIS GAGS
Sbjct: 123 QKVVLILGGSPLRPQKAYELLFTQHSDSLLGYEGDFAKSKAAEALSKKTIRALISAGAGS 182

Query: 175 DSYPGPTKLFLLVKASSSLSMPLHFLPKRDFRYSKKIVPFRLRFKCKMQDKAMDDYASQA 234
            SYPGP +LF+LV A  +L++P HFLPKRDFRY++K VP +LRFKC+ QD A +      
Sbjct: 183 TSYPGPMRLFILVHAPPTLNLPQHFLPKRDFRYNRKFVPSKLRFKCRTQDNATN------ 236

Query: 235 CSPNLRDYTSDDLIWFQCRHIIKGIAFKTPAEE 267
            SP      ++DLIWFQCRH+IKG+AF  P EE
Sbjct: 237 -SP-----PTNDLIWFQCRHVIKGLAFHQPVEE 263

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79335808|ref|NP_171817.2| uncharacterized protein [Arabidopsis thaliana] gi|55978665|gb|AAV68794.1| hypothetical protein AT1G03180 [Arabidopsis thaliana] gi|60547521|gb|AAX23724.1| hypothetical protein At1g03180 [Arabidopsis thaliana] gi|332189419|gb|AEE27540.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  310 bits (793), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 153/273 (56%), Positives = 199/273 (72%), Gaps = 19/273 (6%)

Query: 2   EGQGSSEMQF-TEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQT 60
           EG+G++E  +  +I T A SL  S +FH+IND+ GFVLYMHQQIPS+LQD+SLEF+ LQT
Sbjct: 5   EGEGTTEENYDVDIATTASSLGGSGVFHIINDIVGFVLYMHQQIPSVLQDMSLEFEGLQT 64

Query: 61  EFKELDMDL-----RPTSRRMNLSRKREIKQGIRRLEKLMNTISSLQTALRLLISEIPNI 115
           EF +L+ +L     +P  RR  +SRKRE+K  I++LEKLM TISSL++AL+L+I E P I
Sbjct: 65  EFMDLETNLAEPQVKPLVRRKLMSRKREVKNEIKKLEKLMKTISSLRSALQLMIREAPGI 124

Query: 116 QEVIFVLGASPLRPQHIYQLYFSHGKSVSRG-EPDFTKGKAAEGLSRKAIRTLISKGAGS 174
           Q+V+ +LG SPLRPQ+ Y+L F+  +    G E DF K KAAE LS+K IR LIS GAGS
Sbjct: 125 QKVVLILGGSPLRPQNAYELLFTQRRDHVLGYEGDFAKSKAAEALSKKTIRALISTGAGS 184

Query: 175 DSYPGPTKLFLLVKASSSLSMPLHFLPKRDFRYSKKIVPFRLRFKCKMQDKAMDDYASQA 234
            SYPGP +LF+LV A  +L++P HFLPKRDFRY++K VP +LRFKC+ QD A +      
Sbjct: 185 TSYPGPMRLFILVHAPPTLNLPQHFLPKRDFRYNRKFVPSKLRFKCRTQDNATN------ 238

Query: 235 CSPNLRDYTSDDLIWFQCRHIIKGIAFKTPAEE 267
            SP      ++DLIW+QCRH+IKG+AF  P EE
Sbjct: 239 -SP-----PTNDLIWYQCRHVIKGLAFHQPVEE 265

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504924|ref|XP_003521244.1| PREDICTED: uncharacterized protein LOC100795646 [Glycine max]

 Score =  305 bits (781), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 147/271 (54%), Positives = 198/271 (73%), Gaps = 19/271 (7%)

Query: 3   GQGSSE--MQFTEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQT 60
            + SSE  + + EI T + + D S +FH I DV GFVLYMHQQIPS +QD+S+EFDA+ +
Sbjct: 2   AKASSEPKIDYAEIYTASDTFDGSAVFHTIYDVVGFVLYMHQQIPSTVQDMSVEFDAMHS 61

Query: 61  EFKELDMDL----RPTSRRMNLSRKREIKQGIRRLEKLMNTISSLQTALRLLISEIPNIQ 116
           E+K+L+M+L    +P+ RR ++S+ R+IK GI+RL+KLMN++ ++QTA +++ISEIP I 
Sbjct: 62  EYKQLEMELGTEVKPSFRRKHVSKMRDIKVGIKRLDKLMNSLLNVQTAFKIMISEIPTID 121

Query: 117 EVIFVLGASPLRPQHIYQLYFSHGKSVSRGEPDFTKGKAAEGLSRKAIRTLISKGAGSDS 176
            V+  LGASPLRP+HIY L FSH   VS+ + DF + KAA+ LSRKAIRTLISK AGS +
Sbjct: 122 GVVLALGASPLRPKHIYVLNFSHESGVSKVDDDFARSKAADTLSRKAIRTLISKDAGSVT 181

Query: 177 YPGPTKLFLLVKASSSLSMPLHFLPKRDFRYSKKIVPFRLRFKCKMQDKAMDDYASQACS 236
           YPGP KLF+L+KA SS + P+HFLPKRDFRY++K+VP  L FKC+ QD+ +         
Sbjct: 182 YPGPIKLFVLIKAPSSFNQPMHFLPKRDFRYNRKVVPLGLLFKCRNQDQEV--------- 232

Query: 237 PNLRDYTSDDLIWFQCRHIIKGIAFKTPAEE 267
                 T++DLIWFQCRH+IKG+A     EE
Sbjct: 233 ----TATTEDLIWFQCRHVIKGLAMNPMPEE 259

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082624|ref|XP_002306770.1| predicted protein [Populus trichocarpa] gi|222856219|gb|EEE93766.1| predicted protein [Populus trichocarpa]

 Score =  296 bits (759), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 143/211 (67%), Positives = 175/211 (82%), Gaps = 5/211 (2%)

Query: 6   SSEMQFTEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQTEFKEL 65
           SS+M+FTEIETNA S+D+SV+FHVI  V GFVLYMHQQIPSI QDISLEFD+LQTE+KEL
Sbjct: 5   SSDMEFTEIETNADSIDNSVVFHVIKSVFGFVLYMHQQIPSIFQDISLEFDSLQTEYKEL 64

Query: 66  DMD-----LRPTSRRMNLSRKREIKQGIRRLEKLMNTISSLQTALRLLISEIPNIQEVIF 120
           +       L+ + RR ++SR RE+K GI+RLEKL+NT+  L++AL+L+ISE+  I+EVI 
Sbjct: 65  ETTITNTVLKASVRRNHISRMREVKHGIKRLEKLVNTVGGLESALQLIISEVLCIEEVIL 124

Query: 121 VLGASPLRPQHIYQLYFSHGKSVSRGEPDFTKGKAAEGLSRKAIRTLISKGAGSDSYPGP 180
           VLGASP+RPQH+Y+L FS G +V R +  F K K AEGLSRKA+R LISKGAGS SYPGP
Sbjct: 125 VLGASPIRPQHVYELCFSRGNAVPRDDGGFAKSKVAEGLSRKAVRALISKGAGSSSYPGP 184

Query: 181 TKLFLLVKASSSLSMPLHFLPKRDFRYSKKI 211
           +KLFLLVKA SS ++PLHFLPKRDFRYSKK+
Sbjct: 185 SKLFLLVKAPSSFNLPLHFLPKRDFRYSKKV 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3850575|gb|AAC72115.1| F15k9.21 [Arabidopsis thaliana]

 Score =  280 bits (716), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 141/256 (55%), Positives = 185/256 (72%), Gaps = 19/256 (7%)

Query: 2   EGQGSSEMQF-TEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQT 60
           EG+G++E  +  +I T A SL  S +FH+IND+ GFVLYMHQQIPS+LQD+SLEF+ LQT
Sbjct: 3   EGEGTTEENYDVDIATTASSLGGSGVFHIINDIVGFVLYMHQQIPSVLQDMSLEFEGLQT 62

Query: 61  EFKELDMDL-----RPTSRRMNLSRKREIKQGIRRLEKLMNTISSLQTALRLLISEIPNI 115
           EF +L+ +L     +P  RR  +SRKRE+K  I++LEKLM TISSL++AL+L+I E P I
Sbjct: 63  EFMDLETNLAEPQVKPLVRRKLMSRKREVKNEIKKLEKLMKTISSLRSALQLMIREAPGI 122

Query: 116 QEVIFVLGASPLRPQHIYQLYFSHGKSVSRG-EPDFTKGKAAEGLSRKAIRTLISKGAGS 174
           Q+V+ +LG SPLRPQ+ Y+L F+  +    G E DF K KAAE LS+K IR LIS GAGS
Sbjct: 123 QKVVLILGGSPLRPQNAYELLFTQRRDHVLGYEGDFAKSKAAEALSKKTIRALISTGAGS 182

Query: 175 DSYPGPTKLFLLVKASSSLSMPLHFLPKRDFRYSKKIVPFRLRFKCKMQDKAMDDYASQA 234
            SYPGP +LF+LV A  +L++P HFLPKRDFRY++K VP +LRFKC+ QD A +      
Sbjct: 183 TSYPGPMRLFILVHAPPTLNLPQHFLPKRDFRYNRKFVPSKLRFKCRTQDNATN------ 236

Query: 235 CSPNLRDYTSDDLIWF 250
            SP      ++DLIW+
Sbjct: 237 -SP-----PTNDLIWY 246

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066511|ref|XP_002302116.1| predicted protein [Populus trichocarpa] gi|222843842|gb|EEE81389.1| predicted protein [Populus trichocarpa]

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 137/215 (63%), Positives = 164/215 (76%), Gaps = 8/215 (3%)

Query: 2   EGQGSS-EMQFTEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQT 60
           EG+GSS EM+FTE+ETN  S+D+SVIF V   V GFVLYMHQQIPSIL DISLEFD LQT
Sbjct: 1   EGEGSSSEMEFTEVETNTDSVDNSVIFRVTKSVIGFVLYMHQQIPSILLDISLEFDTLQT 60

Query: 61  EFKELDMDLRPTSRRMNLSRKREIKQGIRRLEKLMNTISSLQTALRLLISEIPNIQEVIF 120
           E+KEL      + RR +LSR R +K+GIRRLEKL+NT+  L++ L+L+ISE+   + VI 
Sbjct: 61  EYKEL-----LSVRRDHLSRMRGVKRGIRRLEKLVNTVGGLESVLQLIISEVFCFEVVIL 115

Query: 121 VLGASPLRPQHIYQLYFSHGKSVSRGEPDFTKGKAAEGLSRKAIRTLISKGAGSDSYPGP 180
           VLGASPL+P+H+Y+  F  G  V+  +  FTK K  EGLSRK  R LISK AGS SYPGP
Sbjct: 116 VLGASPLQPRHVYESCFLRGNVVAGDDGIFTKSKVVEGLSRKVARALISKVAGSSSYPGP 175

Query: 181 TKLFLLVKASSSLSMPLHFLPKRDFRYSKK--IVP 213
           TKLFLLVKA +S ++PLHFLPKRDFRY KK  IVP
Sbjct: 176 TKLFLLVKAPASFNLPLHFLPKRDFRYCKKAWIVP 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559470|ref|XP_002520755.1| conserved hypothetical protein [Ricinus communis] gi|223540140|gb|EEF41717.1| conserved hypothetical protein [Ricinus communis]

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 132/238 (55%), Positives = 171/238 (71%), Gaps = 15/238 (6%)

Query: 1   MEGQGSSEMQFTEIETNAGSLDSSVIFHVINDVAGFVLYM------HQQIPSILQDISLE 54
           MEG+GSSE     IETN  SLD+S+IFHVI +     L+            S+LQDI+LE
Sbjct: 1   MEGEGSSE-----IETNTDSLDNSIIFHVIKNTVFLCLFRKCFLTSRSLCGSVLQDITLE 55

Query: 55  FDALQTEFKEL----DMDLRPTSRRMNLSRKREIKQGIRRLEKLMNTISSLQTALRLLIS 110
           +D+L+ E++E+      + + +++R ++SR RE++ GI+R +KL++TI+ L+TAL+L+IS
Sbjct: 56  YDSLKEEYEEMMAVAQAEAKASTKRKHISRMREVRIGIKRFDKLISTITGLETALQLIIS 115

Query: 111 EIPNIQEVIFVLGASPLRPQHIYQLYFSHGKSVSRGEPDFTKGKAAEGLSRKAIRTLISK 170
            IP ++  I +LGASPLRPQ +Y+L FSHG S+     DF K KAAEGLSRK IR LI+K
Sbjct: 116 GIPGLESFILILGASPLRPQQVYELSFSHGNSLPGAHTDFAKTKAAEGLSRKVIRALITK 175

Query: 171 GAGSDSYPGPTKLFLLVKASSSLSMPLHFLPKRDFRYSKKIVPFRLRFKCKMQDKAMD 228
           GAGS SYPGPTKLFLLVKA SS   PL FLPKRDFRYSKKIVP +LR KCK Q+  MD
Sbjct: 176 GAGSGSYPGPTKLFLLVKAPSSFHFPLQFLPKRDFRYSKKIVPVKLRVKCKSQNLQMD 233

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255644400|gb|ACU22705.1| unknown [Glycine max]

 Score =  257 bits (656), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 121/215 (56%), Positives = 166/215 (77%), Gaps = 6/215 (2%)

Query: 3   GQGSSE--MQFTEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQT 60
            + SSE  + + EI T + + D S +FH I D  GFVLYMHQQIPS +QD+S+EFDA+ +
Sbjct: 2   AKASSEPKIDYAEIYTASDTFDGSAVFHTIYDAVGFVLYMHQQIPSTVQDMSVEFDAMHS 61

Query: 61  EFKELDMDL----RPTSRRMNLSRKREIKQGIRRLEKLMNTISSLQTALRLLISEIPNIQ 116
           E+K+L+M+L    +P+ RR ++S+ R+IK GI+RL+KLMN++ ++QTA ++++SEIP I 
Sbjct: 62  EYKQLEMELGTEVKPSFRRKHVSKMRDIKVGIKRLDKLMNSLLNVQTAFKIMVSEIPTID 121

Query: 117 EVIFVLGASPLRPQHIYQLYFSHGKSVSRGEPDFTKGKAAEGLSRKAIRTLISKGAGSDS 176
            V+  LGASPLRP+HIY L FSH   VS+ + DF + KAA+ LSRKAIRTLISK AGS +
Sbjct: 122 GVVLALGASPLRPKHIYVLNFSHESGVSKVDDDFARSKAADTLSRKAIRTLISKDAGSVT 181

Query: 177 YPGPTKLFLLVKASSSLSMPLHFLPKRDFRYSKKI 211
           YPGP KLF+L+KA SS + P+HFLPKRDFRY++K+
Sbjct: 182 YPGPIKLFVLIKAPSSFNQPMHFLPKRDFRYNRKL 216

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
TAIR|locus:2014550	265	AT1G03180 "AT1G03180" [Arabido	0.951	0.958	0.560	5.7e-75

TAIR|locus:2014550 AT1G03180 "AT1G03180" [Arabidopsis thaliana (taxid:3702)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 153/273 (56%), Positives = 199/273 (72%)

Query:     2 EGQGSSEMQF-TEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQT 60
             EG+G++E  +  +I T A SL  S +FH+IND+ GFVLYMHQQIPS+LQD+SLEF+ LQT
Sbjct:     5 EGEGTTEENYDVDIATTASSLGGSGVFHIINDIVGFVLYMHQQIPSVLQDMSLEFEGLQT 64

Query:    61 EFKELDMDL-----RPTSRRMNLSRKREIKQGIRRLEKLMNTISSLQTALRLLISEIPNI 115
             EF +L+ +L     +P  RR  +SRKRE+K  I++LEKLM TISSL++AL+L+I E P I
Sbjct:    65 EFMDLETNLAEPQVKPLVRRKLMSRKREVKNEIKKLEKLMKTISSLRSALQLMIREAPGI 124

Query:   116 QEVIFVLGASPLRPQHIYQLYFSHGKSVSRG-EPDFTKGKAAEGLSRKAIRTLISKGAGS 174
             Q+V+ +LG SPLRPQ+ Y+L F+  +    G E DF K KAAE LS+K IR LIS GAGS
Sbjct:   125 QKVVLILGGSPLRPQNAYELLFTQRRDHVLGYEGDFAKSKAAEALSKKTIRALISTGAGS 184

Query:   175 DSYPGPTKLFLLVKASSSLSMPLHFLPKRDFRYSKKIVPFRLRFKCKMQDKAMDDYASQA 234
              SYPGP +LF+LV A  +L++P HFLPKRDFRY++K VP +LRFKC+ QD A +      
Sbjct:   185 TSYPGPMRLFILVHAPPTLNLPQHFLPKRDFRYNRKFVPSKLRFKCRTQDNATN------ 238

Query:   235 CSPNLRDYTSDDLIWFQCRHIIKGIAFKTPAEE 267
              SP      ++DLIW+QCRH+IKG+AF  P EE
Sbjct:   239 -SP-----PTNDLIWYQCRHVIKGLAFHQPVEE 265


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.136   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      267       267   0.00095  114 3  11 22  0.45    33
                                                     32  0.39    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  175 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.86u 0.22s 24.08t   Elapsed:  00:00:01
  Total cpu time:  23.86u 0.22s 24.08t   Elapsed:  00:00:01
  Start:  Sat May 11 06:18:45 2013   End:  Sat May 11 06:18:46 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023711001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (276 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
PF06581	264	p31comet: Mad1 and Cdc20-bound-Mad2 binding; Inter	100.0
PF02301	208	HORMA: HORMA domain; InterPro: IPR003511 The HORMA	90.47

>PF06581 p31comet: Mad1 and Cdc20-bound-Mad2 binding; InterPro: IPR009511 This entry represents Mad1 and Cdc20-bound-Mad2 binding proteins that are involved in the cell-cycle surveillance mechanism called the spindle checkpoint []

Probab=100.00  E-value=1.3e-66  Score=468.88  Aligned_cols=214  Identities=18%  Similarity=0.327  Sum_probs=141.5

Q ss_pred             EEEEecccccccchhHHHHHHHHHHHhhhccCCCcccccchHHHHHHHHHHHhhhc-c--cCchhhhhhhhhhHHHHHHH
Q 036230           12 TEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQTEFKELDM-D--LRPTSRRMNLSRKREIKQGI   88 (267)
Q Consensus        12 ~~~~~~~~~l~~~~~~~~v~ellkflLYqRqQIP~~yq~l~~~~~~L~~~~k~~~~-~--~~~s~~r~~~~rkRk~~~~i   88 (267)
                      |-|.++ +.+|+++||+||+||||||||||||||+||       |||+++|++.+. +  .+...+.....+.|||++.|
T Consensus        47 v~v~fp-g~vtqd~ccrfV~ElLK~iLYQRqQiPlpY-------eQL~~f~~k~pq~~d~~~kk~~~~~~~~~kKcqq~L  118 (264)
T PF06581_consen   47 VPVVFP-GPVTQDGCCRFVCELLKHILYQRQQIPLPY-------EQLAFFYRKSPQAKDDVRKKVSFSTEQSNKKCQQAL  118 (264)
T ss_dssp             EEEE-S-S---HHHHHHHHHHHHHHHHHHTTSSSS-H-------HHHT-----------------------HHHHHHHHH
T ss_pred             cceecC-CccccchhHHHHHHHHHHHHhhhhcCCChH-------HHHHHHHhcCcccccccccccccccchhhHHHHHHH
Confidence            444443 679999999999999999999999999999       999999988432 1  11112222345569999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCCCCCceEEEEEecCCcccCCCCCCcccccchHHHHHHHHHHHH
Q 036230           89 RRLEKLMNTISSLQTALRLLISEIPNIQEVIFVLGASPLRPQHIYQLYFSHGKSVSRGEPDFTKGKAAEGLSRKAIRTLI  168 (267)
Q Consensus        89 k~lekll~~le~Lfs~l~~~~~~~~~v~~vlillG~S~~~Pke~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~Rkl~R~Lv  168 (267)
                      ++||.++.|||.||+        .+.|++|+||||||+++|||+|+|||++... .+.++    ++++..|+|+|||+||
T Consensus       119 ~eLE~vl~hLe~lFs--------~t~Vp~VLILLGgt~~SPKE~YeInl~~l~~-~s~e~----slst~~clRkLfRsLf  185 (264)
T PF06581_consen  119 QELESVLSHLEQLFS--------LTLVPRVLILLGGTAVSPKEFYEINLERLVP-NSKEQ----SLSTAVCLRKLFRSLF  185 (264)
T ss_dssp             HHHHHHHHHHHHHHH--------HS---EEEEEESS-SSS-SEEEEEE-TTS-------------SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh--------cCccceEEEEecCccCCcceeEEEcchhhcc-ccccc----ccccHHHHHHHHHHHH
Confidence            999999999999999        6899999999999999999999999998776 55566    7899999999999999


Q ss_pred             hCCCCCCCCCCC-ceEEEEEEecCCCCCCCCCCcCCCCccccccccEEEEEeecCCCccccccccccCCCCCCCCCCCce
Q 036230          169 SKGAGSDSYPGP-TKLFLLVKASSSLSMPLHFLPKRDFRYSKKIVPFRLRFKCKMQDKAMDDYASQACSPNLRDYTSDDL  247 (267)
Q Consensus       169 ~~~~~s~~~~~P-Tk~fvlv~~~~~~~~p~wFlPK~~Fr~p~r~~~~~i~i~c~~~~~~~d~~~~~sc~~~~~~s~~~d~  247 (267)
                      ++|+||+++++| |+|+||+++||+|+. +||+||+|||+|+||++++|+++|+.++              ....+|+||
T Consensus       186 ~aD~Fse~~~~Pl~~TiVmv~~hRdcg~-dWF~PKlnykvPtrg~~~~I~ls~~~~~--------------~~~~~~edy  250 (264)
T PF06581_consen  186 TADAFSELQAPPLMGTIVMVQGHRDCGS-DWFRPKLNYKVPTRGKKLTITLSCGRPS--------------IPATAWEDY  250 (264)
T ss_dssp             HTTTT---S-----EEEEEEEEECCC---SSSEEETT----SS-EEEEEEEE-S-------------------TTTTTTE
T ss_pred             cccchhhccCCCccceEEEEEcCCCCCc-cccccccccccCCCCceEEEEEecCCCC--------------CCCCcchhe
Confidence            999999999999 999999999999999 9999999999999999999999997654              122489999


Q ss_pred             EEEeeceecccCCC
Q 036230          248 IWFQCRHIIKGIAF  261 (267)
Q Consensus       248 iWfQ~p~~iKGf~~  261 (267)
                      ||||||+|||||++
T Consensus       251 IWfQaPvtiKGf~e  264 (264)
T PF06581_consen  251 IWFQAPVTIKGFHE  264 (264)
T ss_dssp             EEEE-SS-EE----
T ss_pred             EEEecCccccccCC
Confidence            99999999999985

This mechanism monitors the proper bipolar attachment of sister chromatids to spindle microtubules and ensures the fidelity of chromosome segregation during mitosis. A key player in mitosis is Mad2, which exhibits an unusual two-state behaviour. A Mad1-Mad2 core complex recruits cytosolic Mad2 to kinetochores through Mad2 dimerisation and converts Mad2 to a conformer amenable to Cdc20 binding. p31comet inactivates the checkpoint by binding to Mad1- or Cdc20-bound Mad2 in such a way as to stop Mad2 activation and to promote the dissociation of the Mad2-Cdc20 complex [].; GO: 0007096 regulation of exit from mitosis, 0005634 nucleus; PDB: 2QYF_B.

>PF02301 HORMA: HORMA domain; InterPro: IPR003511 The HORMA (for Hop1p, Rev7p and MAD2) domain has been suggested to recognise chromatin states that result from DNA adducts, double stranded breaks or non-attachment to the spindle and acts as an adaptor that recruits other proteins

Probab=90.47  E-value=2.7  Score=36.56  Aligned_cols=151  Identities=17%  Similarity=0.162  Sum_probs=77.9

Q ss_pred             hhHHHHHHHHHHHhhhccCCCcccccchHHHHHHHHHHHhhhcccCchhhhhh-hhhhHHHHH-HHHHHHHHHHHHH-HH
Q 036230           25 VIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQTEFKELDMDLRPTSRRMN-LSRKREIKQ-GIRRLEKLMNTIS-SL  101 (267)
Q Consensus        25 ~~~~~v~ellkflLYqRqQIP~~yq~l~~~~~~L~~~~k~~~~~~~~s~~r~~-~~rkRk~~~-~ik~lekll~~le-~L  101 (267)
                      ...+++.--|..|||.|+=.|.-+            + ++-         +.. ... +.... ...+...|.+-|+ .+
T Consensus         8 ~v~~~L~~~is~Ily~R~lyP~~~------------F-~~~---------~~~~~~~-k~l~~~~~~~~~~l~~~i~~~v   64 (208)
T PF02301_consen    8 LVKEFLEVAISQILYLRGLYPEDC------------F-EDR---------RFYGLKL-KVLVPNYSSRAPQLIDYIEKGV   64 (208)
T ss_dssp             HHHHHHHHHHHHHHHHTTSS-GGG------------E-EEE---------EETTEEE------TEEE--HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCCHHH------------C-cEE---------EecCccc-cccccccCCCcHHHHHHHHhhH
Confidence            345566666789999999999886            1 110         000 000 00000 1123333444443 34


Q ss_pred             HHHHHHHHhcCCCccEEEEEecC----CCCCCceEEEEEecCCcccCCCCC--------------CcccccchHHHHHHH
Q 036230          102 QTALRLLISEIPNIQEVIFVLGA----SPLRPQHIYQLYFSHGKSVSRGEP--------------DFTKGKAAEGLSRKA  163 (267)
Q Consensus       102 fs~l~~~~~~~~~v~~vlillG~----S~~~Pke~Y~i~~~~~~~~~~~~~--------------~~~~~~~~~~~~Rkl  163 (267)
                      +.    +|. .-.+.+++|++-.    ..-.+-|.|.++|...........              +......++.-+|.+
T Consensus        65 ~d----ai~-k~~L~~v~l~I~~~d~~~~~~~lE~y~F~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (208)
T PF02301_consen   65 FD----AIE-KGYLKKVVLVIYDDDPPKSNEVLERYTFSFSYFPDGGPMSPEGSSISISNNTSEIDPITLDEVQEQLRAL  139 (208)
T ss_dssp             HH----HHH-TTSEEEEEEEEE----ETTTCEEEEEEEEEEE-TTGGGTSSC----------HHHCSSCHHHHHHHHHHH
T ss_pred             HH----HHh-hCcceEEEEEEEecccCCCCceeEEEEEEEEecCCCCcccccccccccccccccccCCCHHHHHHHHHHH
Confidence            44    333 4578888888874    356789999999988433111000              011124455567889


Q ss_pred             HHHHHhCCCCCCCCCCC--ceEEEEEEe--cCCCCCCCCCCcCCC
Q 036230          164 IRTLISKGAGSDSYPGP--TKLFLLVKA--SSSLSMPLHFLPKRD  204 (267)
Q Consensus       164 ~R~Lv~~~~~s~~~~~P--Tk~fvlv~~--~~~~~~p~wFlPK~~  204 (267)
                      +|.|+........-+..  ..+-|+...  |.+..+ ++|.+-.+
T Consensus       140 lr~l~~~~~~L~~LP~~~~~~~~l~~~~~tp~dy~p-p~f~~~~~  183 (208)
T PF02301_consen  140 LRKLISSTQSLPPLPDERTLTFKLLYYDDTPEDYEP-PGFEAAEE  183 (208)
T ss_dssp             HHHHHHHHCTSSS--TTSSEEEEEEEEES-ETTSCS-ST-TEEES
T ss_pred             HHHHHHHhccCCCccCCceEEEEEEEEeCCCccccC-CCCCCccc
Confidence            99998777665332222  334444444  666666 77766654

Hop1 is a meiosis-specific protein, Rev7 is required for DNA damage induced mutagenesis, and MAD2 is a spindle checkpoint protein which prevents progression of the cell cycle upon detection of a defect in mitotic spindle integrity [, ].; GO: 0007067 mitosis; PDB: 3ABD_B 3ABE_C 4AEZ_H 2V64_A 2VFX_A 1GO4_D 2QYF_C 3GMH_B 1KLQ_A 1S2H_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	267
2qyf_B	240	MAD2L1-binding protein; MAD2 family, spindle assem	2e-43
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>2qyf_B MAD2L1-binding protein; MAD2 family, spindle assembly checkpoint, cell cycle, cell division, mitosis, nucleus, phosphorylation; 2.30A {Homo sapiens} Length = 240

 Score =  146 bits (370), Expect = 2e-43
 Identities = 37/241 (15%), Positives = 83/241 (34%), Gaps = 32/241 (13%)

Query: 19  GSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQTEFKELDMDLRPTSRRMNL 78
           G +          ++   ++Y  QQ+P       L ++ L+  +++         ++   
Sbjct: 28  GPVSQEGCCQFTCELLKHIMYQRQQLP-------LPYEQLKHFYRKPSPQAEEMLKK--- 77

Query: 79  SRKREIKQGIRRLEKLMNTISSLQTALRLLISEIPNIQEVIFVLGASPLRPQHIYQLYFS 138
             +   +   R+ ++ +  + S+ + L    +    +  V+ +LG + L P+  Y+L  S
Sbjct: 78  KPRATTEVSSRKCQQALAELESVLSHLEDFFARTL-VPRVLILLGGNALSPKEFYELDLS 136

Query: 139 HGKSVSRGEPDFTKGKAAEGLSRKAIRTLISKGAGSDSYPGP-TKLFLLVKASSSLSMPL 197
                        +  +     R+  R +    A S+    P     ++ +   +     
Sbjct: 137 LL-----APYSVDQSLSTAACLRRLFRAIFMADAFSELQAPPLMGTVVMAQGHRNCGED- 190

Query: 198 HFLPKRDFRYSKKIVPFRLRFKCKMQDKAMDDYASQACSPNLRDYTSDDLIWFQCRHIIK 257
            F PK ++R   +     +   C                P++R    +D IWFQ     K
Sbjct: 191 WFRPKLNYRVPSRGHKLTVTLSCG--------------RPSIRTTAWEDYIWFQAPVTFK 236

Query: 258 G 258
           G
Sbjct: 237 G 237

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 7e-04
 Identities = 34/253 (13%), Positives = 68/253 (26%), Gaps = 86/253 (33%)

Query: 31  NDVAGFVLYMHQQIPSILQDISLEFDALQTEFKELDMDLR-------------PTSRRMN 77
             V  FV  + +       +       ++TE ++  M  R                 + N
Sbjct: 77  EMVQKFVEEVLRI------NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 78  LSRKREIKQGIRRLEKLMNTISSLQTALRLLISEIPNIQEVIF-VLGASPLRPQHIYQLY 136
           +SR +   +              L+ AL  L     N+  +I  VLG+            
Sbjct: 131 VSRLQPYLK--------------LRQALLELRPA-KNV--LIDGVLGS------------ 161

Query: 137 FSHGKSVSRGEPDFTKGKAAEGLSRKAIRTLISKGA-----GSDSYPGPTKLFLLVKASS 191
              GK+            A +      ++  +          + + P  T L +L K   
Sbjct: 162 ---GKTWV----------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPE-TVLEMLQKLLY 207

Query: 192 SLSMPLHFLPKRDFRYSKKIVPFRLRFKCKMQDKAMDDYASQACSPN----LRDYTSDDL 247
            +                +I   +   +  ++ K    Y       N    L +   +  
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---PY------ENCLLVLLN-VQNAK 257

Query: 248 IW----FQCRHII 256
            W      C+ ++
Sbjct: 258 AWNAFNLSCKILL 270

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	267
2qyf_B	240	MAD2L1-binding protein; MAD2 family, spindle assem	100.0
2vfx_A	206	Mitotic spindle assembly checkpoint protein MAD2A;	95.16
4aez_B	203	MAD2, mitotic spindle checkpoint component MAD2; c	94.81
3abd_A	227	Mitotic spindle assembly checkpoint protein MAD2B;	89.32

>2qyf_B MAD2L1-binding protein; MAD2 family, spindle assembly checkpoint, cell cycle, cell division, mitosis, nucleus, phosphorylation; 2.30A {Homo sapiens}

Probab=100.00  E-value=2e-62  Score=442.05  Aligned_cols=219  Identities=16%  Similarity=0.269  Sum_probs=170.7

Q ss_pred             eEEEEecccccccchhHHHHHHHHHHHhhhccCCCcccccchHHHHHHHHHHHhhhcccCchhhhhhhhhhHHHHHHHHH
Q 036230           11 FTEIETNAGSLDSSVIFHVINDVAGFVLYMHQQIPSILQDISLEFDALQTEFKELDMDLRPTSRRMNLSRKREIKQGIRR   90 (267)
Q Consensus        11 ~~~~~~~~~~l~~~~~~~~v~ellkflLYqRqQIP~~yq~l~~~~~~L~~~~k~~~~~~~~s~~r~~~~rkRk~~~~ik~   90 (267)
                      .+.|.+.. .+|+++|||+|+||||||||||||||+||       ++|++++++++..+.+..   +.+++|.....+|+
T Consensus        21 ~~~v~~~~-~~t~~~~~~~v~eiik~lLYqR~QIP~~y-------~~L~~~~~k~~~~~~d~~---~~k~~~~~~~~~KK   89 (240)
T 2qyf_B           21 MVPVVFPG-PVSQEGCCQFTCELLKHIMYQRQQLPLPY-------EQLKHFYRKPSPQAEEML---KKKPRATTEVSSRK   89 (240)
T ss_dssp             EEEEECSS-CC-CHHHHHHHHHHHHHHHHHTTSSSSCH-------HHHTC------------------------------
T ss_pred             eEEEEecC-cccHHHHHHHHHHHHHHHheecccCCchH-------HHHHHHHhhhccccchhh---hhhhhhccchhhHH
Confidence            46777776 89999999999999999999999999999       999999988743222211   12355677888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCCCCCceEEEEEecCCcccCCCCCCcccccchHHHHHHHHHHHHhC
Q 036230           91 LEKLMNTISSLQTALRLLISEIPNIQEVIFVLGASPLRPQHIYQLYFSHGKSVSRGEPDFTKGKAAEGLSRKAIRTLISK  170 (267)
Q Consensus        91 lekll~~le~Lfs~l~~~~~~~~~v~~vlillG~S~~~Pke~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~Rkl~R~Lv~~  170 (267)
                      ++++++++++|+++|+.+|++ +.|++|+||||||+++|||+|+|+|++++. .+.  ++  .+..+.|+||+||+|+++
T Consensus        90 ~~k~i~~l~~L~~~L~~~f~~-~~v~~V~illGsS~~sPKE~Y~i~~~~~~~-~~~--~~--~ls~~~~lRkl~RaLi~~  163 (240)
T 2qyf_B           90 CQQALAELESVLSHLEDFFAR-TLVPRVLILLGGNALSPKEFYELDLSLLAP-YSV--DQ--SLSTAACLRRLFRAIFMA  163 (240)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHH-SCCCEEEEEESSCSSSCSEEEEEECTTSCC------CC--CSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-CCCcEEEEEecCCCCCcceEEEEEcccccC-ccc--cc--ccchHHHHHHHHHHHHhc
Confidence            999999999999999999987 889999999999999999999999999876 333  33  566778999999999999


Q ss_pred             CCCCCC-CCCCceEEEEEEecCCCCCCCCCCcCCCCccccccccEEEEEeecCCCccccccccccCCCCCCCCCCCceEE
Q 036230          171 GAGSDS-YPGPTKLFLLVKASSSLSMPLHFLPKRDFRYSKKIVPFRLRFKCKMQDKAMDDYASQACSPNLRDYTSDDLIW  249 (267)
Q Consensus       171 ~~~s~~-~~~PTk~fvlv~~~~~~~~p~wFlPK~~Fr~p~r~~~~~i~i~c~~~~~~~d~~~~~sc~~~~~~s~~~d~iW  249 (267)
                      |+||.+ +++||+|||||++|++|+. +||+||+|||||+|+++++|+|+|++++              ..+++++||||
T Consensus       164 d~~s~~~~~~lt~tfvlvk~~~~~~~-~~F~PK~~f~~~~r~~k~~i~~~~~~~~--------------~~~~~~~d~iW  228 (240)
T 2qyf_B          164 DAFSELQAPPLMGTVVMAQGHRNCGE-DWFRPKLNYRVPSRGHKLTVTLSCGRPS--------------IRTTAWEDYIW  228 (240)
T ss_dssp             TTTCCCSCCCCCEEEEEEEEETTSCC-SSSEEETTCCCCSSCEEEEEEEECSCCC--------------CCTTTTTTEEE
T ss_pred             CCccccccCCCeeEEEEEecCCCCCC-cCccCccccccCCccccEEEEEEecCCC--------------CCCCCccceEE
Confidence            999986 5667999999999999877 9999999999999999999999998654              23568999999


Q ss_pred             EeeceecccCCC
Q 036230          250 FQCRHIIKGIAF  261 (267)
Q Consensus       250 fQ~p~~iKGf~~  261 (267)
                      ||||+|||||++
T Consensus       229 ~Q~~~~iKG~~~  240 (240)
T 2qyf_B          229 FQAPVTFKGFRE  240 (240)
T ss_dssp             EECSSCEECC--
T ss_pred             EEcCceeecccC
Confidence            999999999985

>2vfx_A Mitotic spindle assembly checkpoint protein MAD2A; CDC2, nucleus, mitosis, anaphase, cell cycle, CE division, spindle checkpoint; HET: PE4 PE3; 1.95A {Homo sapiens} PDB: 2qyf_A 2v64_A 1s2h_A 1go4_A 3gmh_A 1klq_A 2v64_D 1duj_A

Probab=95.16  E-value=0.66  Score=40.19  Aligned_cols=159  Identities=14%  Similarity=0.185  Sum_probs=87.0

Q ss_pred             ecccccccchhHHHHHHHH----HHHhhhccCCCcccccchHHHHHHHHHHHhhhcccCchhhhhhhhhhHHHHHHHHHH
Q 036230           16 TNAGSLDSSVIFHVINDVA----GFVLYMHQQIPSILQDISLEFDALQTEFKELDMDLRPTSRRMNLSRKREIKQGIRRL   91 (267)
Q Consensus        16 ~~~~~l~~~~~~~~v~ell----kflLYqRqQIP~~yq~l~~~~~~L~~~~k~~~~~~~~s~~r~~~~rkRk~~~~ik~l   91 (267)
                      .....+|-.+.+.+|+|++    ..+||+|+=-|.-.      |+    ..+.-..-+       ..+|--+.+      
T Consensus         7 ~~~~~itlk~s~~iv~efl~~ain~ILY~RgiYP~e~------F~----~~k~y~l~v-------~~sr~p~l~------   63 (206)
T 2vfx_A            7 SREQGITARGSAEIVAEFFSFGINSILYQRGIYPSET------FT----RVQKYGLTL-------LVTTDLELI------   63 (206)
T ss_dssp             CCCCSBCHHHHHHHHHHHHHHHHHHHHHHTTSSCGGG------EE----EEEETTEEE-------EEECCHHHH------
T ss_pred             cccceeeHHHHHHHHHHHHHHHHHHHHHhccCCChHH------hH----HHHHcCcee-------eEecCHHHH------
Confidence            3566788888888888875    56999998766654      10    000000000       111111111      


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCC-CCCCceEEEEEecCCcccCC-CCCCcccccchHHHHHHHHHHHHh
Q 036230           92 EKLMNTISSLQTALRLLISEIPNIQEVIFVLGAS-PLRPQHIYQLYFSHGKSVSR-GEPDFTKGKAAEGLSRKAIRTLIS  169 (267)
Q Consensus        92 ekll~~le~Lfs~l~~~~~~~~~v~~vlillG~S-~~~Pke~Y~i~~~~~~~~~~-~~~~~~~~~~~~~~~Rkl~R~Lv~  169 (267)
                          +=|.++.+++...+. ...+.++++++=+. .-.|-|-|.++|........ +.......+..+.-+|.++|.|..
T Consensus        64 ----~YI~~~l~~l~~~L~-~g~v~klvlvI~~~~~~~~lEr~~Fd~~~~~~~~~~~~~~~~~~~ei~~eira~l~qi~~  138 (206)
T 2vfx_A           64 ----KYLNNVVEQLKDWLY-KSSVQKLVVVISNIESGEVLERWQFDIESDKTAKDDSAPREKSQKAIQDEIRSVIRQITA  138 (206)
T ss_dssp             ----HHHHHHHHHHHHHHH-TTCEEEEEEEEEETTTCCEEEEEEEEEEECTTC---CCCBSCCHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHH-hCceeEEEEEEEeCCCCceEEEEEEEeeccCCccccccCCCCCHHHHHHHHHHHHHHHHH
Confidence                122223333333332 45677776666554 44799999999987543111 001111235577778999999999


Q ss_pred             CCCCCCCCCCCceEEEEEEecCCCCCCCCCCcC
Q 036230          170 KGAGSDSYPGPTKLFLLVKASSSLSMPLHFLPK  202 (267)
Q Consensus       170 ~~~~s~~~~~PTk~fvlv~~~~~~~~p~wFlPK  202 (267)
                      +..+...-+.+--.-|++....+...|..+.+-
T Consensus       139 s~~~Lp~L~~~ctF~i~v~t~~~~~~P~~W~~s  171 (206)
T 2vfx_A          139 TVTFLPLLEVSCSFDLLIYTDKDLVVPEKWEES  171 (206)
T ss_dssp             HHTTSCCCCSCEEEEEEEEECTTSCCCTTCCCC
T ss_pred             HHhcCCCCCCCcEEEEEEEEcCCCCCCCCcccC
Confidence            987775444444445566666665555444443

>4aez_B MAD2, mitotic spindle checkpoint component MAD2; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=94.81  E-value=0.34  Score=42.19  Aligned_cols=154  Identities=12%  Similarity=0.126  Sum_probs=80.0

Q ss_pred             ccccccchhHHHHHHHH----HHHhhhccCCCcccccchHHHHHHHHHHHhhhcccCchhhhhhhhhhHHHHHHHHHHHH
Q 036230           18 AGSLDSSVIFHVINDVA----GFVLYMHQQIPSILQDISLEFDALQTEFKELDMDLRPTSRRMNLSRKREIKQGIRRLEK   93 (267)
Q Consensus        18 ~~~l~~~~~~~~v~ell----kflLYqRqQIP~~yq~l~~~~~~L~~~~k~~~~~~~~s~~r~~~~rkRk~~~~ik~lek   93 (267)
                      ...++-.+.+.+|.|++    ..+||+|+=-|.-.      |+    ..++-..-+       ..+|--+.+   +=+.+
T Consensus         7 ~~~itlkgS~~iv~eFl~~aInsILY~RgIYP~e~------F~----~~rky~l~v-------~~sr~p~l~---~YI~~   66 (203)
T 4aez_B            7 RTNFSAKGSSKLVSEFFEYAVNSILFQRGIYPAED------FK----VVRKYGLNM-------LVSVDEEVK---TYIRK   66 (203)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHTTSSCGGG------EE----EEEETTEEE-------EEECCHHHH---HHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHhccccCChHH------ch----HhhhcCccc-------eeecCHHHH---HHHHH
Confidence            34577777777777765    56999998666553      10    000000000       111111111   12222


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCccEEEEEec-CCCCCCceEEEEEecCCcccCCCCCCcccc-cc-hHHHHHHHHHHHHhC
Q 036230           94 LMNTISSLQTALRLLISEIPNIQEVIFVLG-ASPLRPQHIYQLYFSHGKSVSRGEPDFTKG-KA-AEGLSRKAIRTLISK  170 (267)
Q Consensus        94 ll~~le~Lfs~l~~~~~~~~~v~~vlillG-~S~~~Pke~Y~i~~~~~~~~~~~~~~~~~~-~~-~~~~~Rkl~R~Lv~~  170 (267)
                      +++++.       ..+. ...+.++++++= ...-.|-|-|.+++........++....+. .. .+.-+|-++|.|..+
T Consensus        67 ~l~~v~-------~wL~-~g~v~klvlvI~~~~t~~~lEr~~Fdv~~~~~~~~~d~~~~k~~~e~iq~eira~lrqItas  138 (203)
T 4aez_B           67 IVSQLH-------KWMF-AKKIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNIGNKEDELRVQKEIQALIAQITAT  138 (203)
T ss_dssp             HHHHHH-------HHHH-TTCEEEEEEEEEETTTCCEEEEEEEEEEECC---------CHHHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHH-------HHHH-hCCceEEEEEEEcCCCCceEEEEEEeccccCccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            333333       3332 456777666664 444789999999998843311111111112 22 577799999999999


Q ss_pred             CCCCCCCCCCceEEEEEEecCCCCCC-CCC
Q 036230          171 GAGSDSYPGPTKLFLLVKASSSLSMP-LHF  199 (267)
Q Consensus       171 ~~~s~~~~~PTk~fvlv~~~~~~~~p-~wF  199 (267)
                      ..+...-+.+----|++....+...| +|-
T Consensus       139 vt~Lp~L~~~ctF~vlvyt~~da~vp~~W~  168 (203)
T 4aez_B          139 VTFLPQLEEQCTFNVLVYADKDSEVPTDWV  168 (203)
T ss_dssp             GGTSCCCCSCEEEEEEEEEETTCCCCTTEE
T ss_pred             HhcCCCCCCCceEEEEEEeCCCCCCCCccc
Confidence            98887665555555666666666654 553

>3abd_A Mitotic spindle assembly checkpoint protein MAD2B; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_C*

Probab=89.32  E-value=4.4  Score=35.52  Aligned_cols=79  Identities=16%  Similarity=0.128  Sum_probs=47.9

Q ss_pred             CCCccEEEEEecCCCCCCceEEEEEecCCcccCCCCCCcccccchHHHHHHHHHHHHhCCCCCCCCCCCceEEEEEEecC
Q 036230          112 IPNIQEVIFVLGASPLRPQHIYQLYFSHGKSVSRGEPDFTKGKAAEGLSRKAIRTLISKGAGSDSYPGPTKLFLLVKASS  191 (267)
Q Consensus       112 ~~~v~~vlillG~S~~~Pke~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~Rkl~R~Lv~~~~~s~~~~~PTk~fvlv~~~~  191 (267)
                      ...|.+++|++=+..-.|-|-|.+++........... . ..+..+.-+|.++|.|..+..+...-+.+.---|++....
T Consensus        93 ~g~v~klvlvI~~~~~e~lER~~Fdi~~~~~~~~~~~-~-~~~eie~eira~l~qi~~s~~~Lp~L~~~ctF~ilv~t~~  170 (227)
T 3abd_A           93 KNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSD-S-LLSHVEQLLAAFILKISVCDAVLDHNPPGCTFTVLVHTRE  170 (227)
T ss_dssp             TTCEEEEEEEEECTTSCEEEEEEEEEECCC------C-C-HHHHHHHHHHHHHHHHHTGGGTSCCCCTTCEEEEEEEEC-
T ss_pred             hCceeEEEEEEEcCCCcEEEEEEEEeeccCcccccCc-c-cHHHHHHHHHHHHHHHHHHHhhCCCCCCCcEEEEEEEecC
Confidence            4568888887766666999999999987533111111 0 1245677788999999888766654433433334555544


Q ss_pred             C
Q 036230          192 S  192 (267)
Q Consensus       192 ~  192 (267)
                      +
T Consensus       171 ~  171 (227)
T 3abd_A          171 A  171 (227)
T ss_dssp             -
T ss_pred             c
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	267
d1go4a_	196	The spindle assembly checkpoint protein mad2 {Huma	95.88

>d1go4a_ d.135.1.1 (A:) The spindle assembly checkpoint protein mad2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: The spindle assembly checkpoint protein mad2
superfamily: The spindle assembly checkpoint protein mad2
family: The spindle assembly checkpoint protein mad2
domain: The spindle assembly checkpoint protein mad2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.085  Score=43.27  Aligned_cols=152  Identities=14%  Similarity=0.132  Sum_probs=85.3

Q ss_pred             ccccchhHHHHHHH----HHHHhhhccCCCcccccchHHHHHHHHHHHhhhcccCchhhhhhhhhhHHHHHHHHHHHHHH
Q 036230           20 SLDSSVIFHVINDV----AGFVLYMHQQIPSILQDISLEFDALQTEFKELDMDLRPTSRRMNLSRKREIKQGIRRLEKLM   95 (267)
Q Consensus        20 ~l~~~~~~~~v~el----lkflLYqRqQIP~~yq~l~~~~~~L~~~~k~~~~~~~~s~~r~~~~rkRk~~~~ik~lekll   95 (267)
                      ++|-.+.+.+|+++    |..+||+|+=.|.-.      |      .+.-...  -..   ..+|-       .++.+.+
T Consensus         3 ~it~k~S~~~v~e~l~~ai~~ILY~RgiyP~~~------F------~~~~~~~--l~v---~~~~~-------~~l~~yi   58 (196)
T d1go4a_           3 GITLRGSAEIVAEFFSFGINSILYQRGIYPSET------F------TRVQKYG--LTL---LVTTD-------LELIKYL   58 (196)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHHHHHHTTSSCGGG------E------EEEEETT--EEE---EEECC-------HHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHccCCChHH------c------hhheECC--eeE---EEecC-------HHHHHHH
Confidence            45555566666666    678999999999886      1      1000000  000   01111       1222233


Q ss_pred             HHHHHHHHHHHHHHhcCCCccEEEEEecCCCC-CCceEEEEEecCCcccCCCCC-CcccccchHHHHHHHHHHHHhCCCC
Q 036230           96 NTISSLQTALRLLISEIPNIQEVIFVLGASPL-RPQHIYQLYFSHGKSVSRGEP-DFTKGKAAEGLSRKAIRTLISKGAG  173 (267)
Q Consensus        96 ~~le~Lfs~l~~~~~~~~~v~~vlillG~S~~-~Pke~Y~i~~~~~~~~~~~~~-~~~~~~~~~~~~Rkl~R~Lv~~~~~  173 (267)
                         +.+..++..++. ...+.++++++-.-.- .+.|-|.++|.........+. ..-....++.-+|.++|.|.....+
T Consensus        59 ---~~~~~~v~~~L~-~~~l~~l~lvI~~~~~~~vlEry~F~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ir~L~~~~~~  134 (196)
T d1go4a_          59 ---NNVVEQLKDWLY-KCSVQKLVVVISNIESGEVLERWQFDIECDKTAKDDSAPREKSQKAIQDEIRSVIAQITATVTF  134 (196)
T ss_dssp             ---HHHHHHHHHHHH-TTCEEEEEEEEEETTTCCEEEEEEEEEEECGGGGSCSSCBCCCHHHHHHHHHHHHHHHHHGGGT
T ss_pred             ---HHHHHHHHHHHH-hCccEEEEEEEEeCCCCCeeEEEEEEEEecccCCcccccccCCHHHHHHHHHHHHHHHHHHHcc
Confidence               233333334443 4678888888865443 478999999975332111111 1112356666789999999998877


Q ss_pred             CCCCCCCceEEEEEEecCCCCCCCCC
Q 036230          174 SDSYPGPTKLFLLVKASSSLSMPLHF  199 (267)
Q Consensus       174 s~~~~~PTk~fvlv~~~~~~~~p~wF  199 (267)
                      ...-+.+-..-|++..+.++..|.+.
T Consensus       135 Lp~Lp~~~tf~i~~yt~~d~~~P~~w  160 (196)
T d1go4a_         135 LPLLEVSCSFDLLIYTDKDLVVPEKW  160 (196)
T ss_dssp             SCCCCSCEEEEEEEEEESSCCCCTTE
T ss_pred             CCCCCCCeEEEEEEEcCCCCCCCCcc
Confidence            76555554455566688887765443