Citrus Sinensis ID: 036242

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Protein Sequence
SFLHWTYDPSTNVVDLAFRRSTPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYTSPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLHLYSDLHPITGDNARSVGTIDFRTGQIASNAGDFDSRQRKRNFHQFLSILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTAISSGIISAALEAITWTIVVKRKKASEEKQNQRTNGVNEANGHAARTVRLEPEV
Secondary Structure (PSIPRED)
cEEEEEEEccccEEEEEEEEEcccccEEEEEEcccccccccccEEEEEEcccccEEEEEccccccccccccccEEEEEEEcEEEEEccEEEEEEEEcccccccccccccccccccccccccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccccEEEEEEEcccccccEEEEEEccccccccccEEEEEEEcccccEEEEEEEEccccccccccccEccccccEEEEEccEEEEEEEEEcccccccccccccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccccccccccccccccEEcccccc
Coil and Loop (DISEMBL)
sflhwtydpstnvvdlafrrstpssqwvtwalnpsgqrmagskchvafrnstgairaytspigsgtptlqegslsfrVTNITATLVGNEWTIFARLHLysdlhpitgdnarsvgtidfrtgqiasnagdfdsrqrKRNFHQFLSILMPMGAMMARYLKVFrfgnpawfYLHVACQVSAYIIGVAGWatgidlssgisslnrdyIHRNIGIALFFLATVQVFALLlrpkpdhkyrLYWNIYHWAVGYAIIVTSVFNVLkglslldpeIQWWHAYIVTAISSGIISAALEAITWTIVVKRKKASEEkqnqrtngvneanghaartvrlepev
Flexible Loop (DISEMBL)
sflhwtydpstnvvDLAFRRSTPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYTSPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLHLYSDLHPITGDNARSVGTIDFRTGQIasnagdfdsrqrKRNFHQFLSILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTAISSGIISAALEAITWTIVVKRkkaseekqnqrtngvneanghaartvrlepev
Low Complexity Region (SEG)
SFLHWTYDPSTNVVDLAFRRSTPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYTSPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLHLYSDLHPITGDNARSVGTIDFRTGQIASNAGDFDSRQRKRNFHQFLSILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTAISSGIISAALEAITWTIVVKRKKASEEKQNQRTNGVNEANGHAARTVRLEPEV
Disordered region (IsUnstruct)
**LHWTYDPSTNVVDLAFRRSTPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYTSPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLHLYSDLHPITGDNARSVGTIDFRTGQIASNAGDF*****KRNFHQFLSILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTAISSGIISAALEAITWTIVVK*********************************
Disordered Region (DISOPRED)
SFLHWTYDPSTNVVDLAFRRSTPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRA******************FRVTNITATLVGNEWTIFARLHLYSDLHPITGDNARSVGT**********NAGDFDSRQRKRNFHQFLSILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTAISSGIISAALEAITWT*************************************
Disordered Region (DISEMBL)
SFLHWTYDPSTNVVDLAFRRSTPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYTSPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLHLYSDLHPITGDNARSVGTIDFRTGQIASNAGDFDSRQRKRNFHQFLSILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTAISSGIISAALEAITWTIVVKR*************GVNEANGHAARTVRLEPEV
Disordered Region (DISPRO)
SFLHWTYDPSTNVVDLAFRRSTPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYTSPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLHLYSDLHPITGDNARSVGTIDFRTGQIAS****FDSRQRKRNFHQFLSILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTAISSGIISAALEAITWTIVVKRKK******************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SFLHWTYDPSTNVVDLAFRRSTPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYTSPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLHLYSDLHPITGDNARSVGTIDFRTGQIASNAGDFDSRQRKRNFHQFLSILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTAISSGIISAALEAITWTIVVKRKKASEEKQNQRTNGVNEANGHAARTVRLEPEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	330	2.2.26 [Sep-21-2011]
Q94BT2	252	Auxin-induced in root cul	no	no	0.293	0.384	0.372	1e-07
Q6INU7	590	Putative ferric-chelate r	N/A	no	0.515	0.288	0.25	1e-06

>sp|Q94BT2|AIR12_ARATH Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 5/102 (4%)

Query: 1   SFLHWTYDPSTNVVDLAFRRSTPSSQ---WVTWALNPSGQRMAGSKCHVAFRNSTGAIRA 57
           S+LH+TY+ S + + +AF  +TPS     WV WA+NP+G +MAGS+  +A+R+  GA   
Sbjct: 51  SYLHYTYNSSNSSLSVAFV-ATPSQANGGWVAWAINPTGTKMAGSQAFLAYRSGGGAAPV 109

Query: 58  YTSPIGSGTPTLQEGSLSFRVTNITA-TLVGNEWTIFARLHL 98
             +   S   +L EG L+F   N+ A +L G    IF  + +
Sbjct: 110 VKTYNISSYSSLVEGKLAFDFWNLRAESLSGGRIAIFTTVKV 151

Arabidopsis thaliana (taxid: 3702)

>sp|Q6INU7|FRRS1_XENLA Putative ferric-chelate reductase 1 OS=Xenopus laevis GN=frrs1 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 18/188 (9%)

Query: 149 MGAMMARYLKVF-----RFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDY 203
           +G ++AR+ K        FG   WF +H    ++   + V  +     +  G  S    Y
Sbjct: 386 IGVIIARFFKPVWPTSSLFGEKIWFQIHRCLMITTVFLTVVAFVLPF-IYRGYFSKRAGY 444

Query: 204 IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYA---IIVTSVF--NVLK 258
            H ++G+ +  L  +Q    + RP P    R  +N  HWA G A   I V ++F    L+
Sbjct: 445 -HPHLGVTVMILTVLQPVLAVFRPPPQTHRRGIFNWTHWATGTAARIIAVAAMFLGMDLQ 503

Query: 259 GLSLLDPEIQWWHAYIVTAIS--SGIISAALEAITWTIVVKRKKASEEKQNQRTNGVNEA 316
            L L DP    W  Y +         +   LEA  + ++ K K   E++     +  +EA
Sbjct: 504 ALDLPDP----WDTYTMIGFVLWHVFVDLLLEAHGFCLLKKAKTMEEDQIGILNSSPDEA 559

Query: 317 NGHAARTV 324
            GH  + +
Sbjct: 560 EGHTFKKI 567

Putative ferric-chelate reductases reduce Fe(3+) to Fe(2+) before its transport from the endosome to the cytoplasm.

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
13785207	400	putative membrane protein [Solanum tuber	0.942	0.777	0.511	5e-88
13785213	400	putative membrane protein [Solanum tuber	0.942	0.777	0.511	5e-88
13785211	400	putative membrane protein [Solanum tuber	0.942	0.777	0.507	2e-87
255582433	385	Auxin-induced in root cultures protein 1	0.933	0.8	0.511	6e-87
13785209	402	putative membrane protein [Solanum tuber	0.966	0.793	0.504	1e-86
224137280	383	predicted protein [Populus trichocarpa]	0.966	0.832	0.477	3e-83
89257512	394	hypothetical protein 26.t00022 [Brassica	0.942	0.789	0.489	3e-82
449453588	396	PREDICTED: uncharacterized protein LOC10	0.960	0.800	0.488	4e-81
449506899	396	PREDICTED: uncharacterized LOC101211761	0.960	0.800	0.488	5e-81
449453535	390	PREDICTED: uncharacterized protein LOC10	0.912	0.771	0.490	5e-80

>gi|13785207|emb|CAC37355.1| putative membrane protein [Solanum tuberosum]

 Score =  330 bits (847), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 173/338 (51%), Positives = 209/338 (61%), Gaps = 27/338 (7%)

Query: 1   SFLHWTYDPSTNVVDLAFRRS-TPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYT 59
           S LHW+Y P  + VDLA+R    P++ WV W LN  G RM GS+C VAFRNS+G I AYT
Sbjct: 51  SVLHWSYHPDNHTVDLAYRHGGVPNTDWVAWGLNIDGTRMVGSQCLVAFRNSSGEIHAYT 110

Query: 60  SPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLHLYSD------------------ 101
           SP+ S    L EG+LSF V  I A    NE+ IFA L L +                   
Sbjct: 111 SPVSSYGTQLAEGALSFNVPRIGAEYSNNEFIIFATLELPAGRTNFNQAWQNGAVSGQAL 170

Query: 102 -LHPITGDNARSVGTIDFRTGQIASNAGDFDSRQRKRNFHQFLS-----ILMPMGAMMAR 155
             H  +GDN RS G++DF  G++        SRQR+RN H  L+     +LMPMGA+ AR
Sbjct: 171 TAHVQSGDNMRSFGSVDFANGELGGGGSSVTSRQRRRNVHGVLNAVSWGVLMPMGAVFAR 230

Query: 156 YLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFL 215
           YLKVF+  NPAWFY+HVACQ SAYI+GVAGW TG+ L S  + +     HRNIGI LF L
Sbjct: 231 YLKVFKAANPAWFYIHVACQTSAYIVGVAGWGTGLKLGSDSTGIEFT-THRNIGITLFCL 289

Query: 216 ATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIV 275
            T+QVFALLLRPKPDHKYRLYWNIYH AVGYA+I  ++ NV +G   L+ +  W  AY  
Sbjct: 290 GTLQVFALLLRPKPDHKYRLYWNIYHHAVGYAVISLAIANVFEGFDALNGQKNWKRAYTG 349

Query: 276 TAISSGIISAALEAITWTIVVKRKKASEEKQNQR-TNG 312
             I+ G I+  LEA TW IV+KRKK    K  Q  TNG
Sbjct: 350 VIIAIGAIAVLLEAFTWFIVIKRKKTDSNKHTQNGTNG 387

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13785213|emb|CAC37358.1| putative membrane protein [Solanum tuberosum]

 Score =  330 bits (846), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 173/338 (51%), Positives = 209/338 (61%), Gaps = 27/338 (7%)

Query: 1   SFLHWTYDPSTNVVDLAFRRS-TPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYT 59
           S LHW+Y P  + VDLA+R    P++ WV W LN  G RM GS+C VAFRNS+G I AYT
Sbjct: 51  SVLHWSYHPDNHTVDLAYRHGGVPNTDWVAWGLNIDGTRMVGSQCLVAFRNSSGEIHAYT 110

Query: 60  SPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLHLYSD------------------ 101
           SP+ S    L EG+LSF V  I A    NE+ IFA L L +                   
Sbjct: 111 SPVSSYGTQLAEGALSFNVPRIGAEYSNNEFIIFATLELPAGRTSFNQAWQNGAVSGQAL 170

Query: 102 -LHPITGDNARSVGTIDFRTGQIASNAGDFDSRQRKRNFHQFLS-----ILMPMGAMMAR 155
             H  +GDN RS G++DF  G++        SRQR+RN H  L+     +LMPMGA+ AR
Sbjct: 171 TAHVQSGDNMRSFGSVDFANGELGGGGSSVTSRQRRRNVHGILNAVSWGVLMPMGAVFAR 230

Query: 156 YLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFL 215
           YLKVF+  NPAWFY+HVACQ SAYI+GVAGW TG+ L S  + +     HRNIGI LF L
Sbjct: 231 YLKVFKAANPAWFYIHVACQTSAYIVGVAGWGTGLKLGSDSTGIEFT-THRNIGITLFCL 289

Query: 216 ATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIV 275
            T+QVFALLLRPKPDHKYRLYWNIYH AVGYA+I  ++ NV +G   L+ +  W  AY  
Sbjct: 290 GTLQVFALLLRPKPDHKYRLYWNIYHHAVGYAVISLAITNVFQGFDALNGQKNWKRAYTG 349

Query: 276 TAISSGIISAALEAITWTIVVKRKKASEEKQNQR-TNG 312
             I+ G I+  LEA TW IV+KRKK    K  Q  TNG
Sbjct: 350 VIIAIGAIAVLLEAFTWFIVIKRKKTDSNKHTQNGTNG 387

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13785211|emb|CAC37357.1| putative membrane protein [Solanum tuberosum]

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/339 (50%), Positives = 209/339 (61%), Gaps = 28/339 (8%)

Query: 1   SFLHWTYDPSTNVVDLAFRRS-TPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYT 59
           S LHW+Y P  + VDLA+R    P++ WV W LN  G RM GS+C VAFRNS+G I AYT
Sbjct: 51  SVLHWSYHPDNHTVDLAYRHGGVPNTDWVAWGLNIDGTRMVGSQCLVAFRNSSGEIHAYT 110

Query: 60  SPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLHLYSD------------------ 101
           SP+ S    L +G+LSF V  I A    NE+ IFA L L +                   
Sbjct: 111 SPVSSYGTQLAKGALSFNVPRIGAEYSNNEFIIFATLELPAGRTSFNQAWQNGAVSGQAL 170

Query: 102 -LHPITGDNARSVGTIDFRTGQIASNAGDFDSRQRKRNFHQFLS-----ILMPMGAMMAR 155
             H  +GDN RS G+IDF  G++        SRQR+RN H  L+     +LMPMGA+ AR
Sbjct: 171 TAHVQSGDNMRSFGSIDFANGELGGGGSSVTSRQRRRNVHGVLNAVSWGVLMPMGAVFAR 230

Query: 156 YLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFL 215
           YLKVF+  NPAWFY+HVACQ SAYI+G+AGW TG+ L S  + +     HRNIGI LF L
Sbjct: 231 YLKVFKAANPAWFYIHVACQTSAYIVGIAGWGTGLKLGSDSTGIEFT-THRNIGITLFCL 289

Query: 216 ATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIV 275
            T+QVFALLLRPKPDHKYRLYWNIYH AVGYA+I  ++ NV +G   L+ +  W  AY  
Sbjct: 290 GTLQVFALLLRPKPDHKYRLYWNIYHHAVGYAVISLAIANVFQGFDALNGQKNWKRAYTG 349

Query: 276 TAISSGIISAALEAITWTIVVKRKKASEEKQNQRTNGVN 314
             I+ G I+  LEA TW IV+KRKK    K  Q  NG N
Sbjct: 350 VIIAIGAIAVLLEAFTWFIVIKRKKTDTNKHTQ--NGTN 386

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582433|ref|XP_002532004.1| Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis] gi|223528335|gb|EEF30377.1| Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]

 Score =  327 bits (837), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 173/338 (51%), Positives = 218/338 (64%), Gaps = 30/338 (8%)

Query: 1   SFLHWTYDPSTNVVDLAFRRS-TPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYT 59
           SFLHW Y PS    D+AFRR+ T +S WV WALNP+GQ+M GS+  +AF +STG   AYT
Sbjct: 49  SFLHWNYHPSNMTADIAFRRTGTTTSNWVVWALNPTGQQMQGSQALLAFHDSTGTPTAYT 108

Query: 60  SPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLHLYSDL----------------- 102
           + I + +PT+Q G+LSF V NI A    NE  IFA L L ++L                 
Sbjct: 109 TSIDTMSPTMQRGNLSFGVQNIRAEYSNNEMIIFATLQLNANLISTNQVWQVGTMTGTTF 168

Query: 103 --HPITGDNARSVGTIDFRTGQIASNAGDFDSRQRKRNFHQFLS-----ILMPMGAMMAR 155
             H +   N  SVGTI+F TG   + +   +S   K+N H  L+     ILMPMG M+AR
Sbjct: 169 NSHAMDPANRASVGTINFATGTTVAGSAPSNS---KKNVHGVLNAVSWGILMPMGIMIAR 225

Query: 156 YLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFL 215
           Y+KVF+  NPAWFYLHVACQ SAY++GVAGW TG+ L S    +  +  HRNIGI LF L
Sbjct: 226 YVKVFKVANPAWFYLHVACQSSAYVVGVAGWGTGLKLGSDSPGIKYEK-HRNIGITLFCL 284

Query: 216 ATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIV 275
           AT+Q+FA+LLRPKPDHKYRLYWNIYH ++GYA I+ S+ NV +GL +LDPE +W  AY  
Sbjct: 285 ATLQIFAMLLRPKPDHKYRLYWNIYHHSIGYATIILSIINVYEGLDILDPEKKWKRAYSG 344

Query: 276 TAISSGIISAALEAITWTIVVKRKK-ASEEKQNQRTNG 312
             I  G  +A LEA+TW IV++RKK  S +K    TNG
Sbjct: 345 VLIFLGATAAVLEAVTWLIVIRRKKTVSSDKYTNGTNG 382

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13785209|emb|CAC37356.1| putative membrane protein [Solanum tuberosum]

 Score =  325 bits (834), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 177/351 (50%), Positives = 215/351 (61%), Gaps = 32/351 (9%)

Query: 1   SFLHWTYDPSTNVVDLAFRRS-TPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYT 59
           SFLHWTY P  + VDLA+R      S WV WALN  G  MAG +  +AFRNS+G I AYT
Sbjct: 51  SFLHWTYHPDNHTVDLAYRHGGVTESSWVAWALNLDGTGMAGCQSLIAFRNSSGQIHAYT 110

Query: 60  SPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLHLYSD------------------ 101
           SPI     TL EG+LSF V  I+A  V +E  IFA L L  +                  
Sbjct: 111 SPIAGYGTTLTEGALSFGVPRISAEFVRSEMIIFATLELPINRTSFTQVWQNGQVSEQAL 170

Query: 102 -LHPITGDNARSVGTIDFRTGQIASNAG---DFDSRQRKRNFHQFLS-----ILMPMGAM 152
            +H  +GDN RSVGT+DF +GQ ++ AG      +RQR+RN H  L+     +LMPMGA+
Sbjct: 171 RVHQTSGDNMRSVGTVDFASGQTSAGAGGGISASARQRRRNIHGVLNAVSWGVLMPMGAI 230

Query: 153 MARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIAL 212
            ARYLKVF+  NPAWFYLH  CQ  AY +GVAGW TG+ L S    +  D  HRNIGI L
Sbjct: 231 FARYLKVFKSANPAWFYLHAGCQTVAYAVGVAGWGTGLKLGSDSVGIRFD-THRNIGITL 289

Query: 213 FFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHA 272
           F L T+QVFALLLRPKPDHK+RLYWNIYH   GY +I+ S+ NV +G   L+ +  W  A
Sbjct: 290 FCLGTLQVFALLLRPKPDHKFRLYWNIYHHVTGYTVIILSIINVFEGFDALNGQKNWKKA 349

Query: 273 YIVTAISSGIISAALEAITWTIVVKRKKASEEKQNQRTNGVNEANGHAART 323
           YI   I  G I+  LEAITW IV+KRKK S   +    NG    NG+A+R+
Sbjct: 350 YIGVIIFLGAIAVLLEAITWFIVIKRKKTSVSDKYPHGNGT---NGYASRS 397

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137280|ref|XP_002322518.1| predicted protein [Populus trichocarpa] gi|222867148|gb|EEF04279.1| predicted protein [Populus trichocarpa]

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 166/348 (47%), Positives = 223/348 (64%), Gaps = 29/348 (8%)

Query: 1   SFLHWTYDPSTNVVDLAFRRS-TPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYT 59
           S+LHW YD S+N + +A+R +   SS+WV WA+NP+   MAGS+  VA++ + G +RAYT
Sbjct: 34  SYLHWNYDSSSNKLQIAYRHTGITSSRWVAWAINPTSTGMAGSQALVAYQQTDGTMRAYT 93

Query: 60  SPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARL----------HLYSD-------- 101
           SPI S   +LQEG LSF V++++ATL  NE  IFA +          H++ D        
Sbjct: 94  SPISSYQTSLQEGKLSFDVSDLSATLANNEIIIFATIGLSNTSTTVNHVWQDGAVSGNAT 153

Query: 102 -LHPITGDNARSVGTIDFRTGQIASNAGDFDSRQRKRNFHQFLS-----ILMPMGAMMAR 155
            +H  +G N +S+GT++  +G+ +S  G+   R RKRN H  L+     ILMP+GA +AR
Sbjct: 154 QVHATSGANVQSMGTLNLLSGESSSTGGN--DRIRKRNIHGVLNAVSWGILMPIGAFIAR 211

Query: 156 YLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFL 215
           YLK F+  +PAWFYLHV CQ  AYI+GVAGW TG+ L S  +S+  D  HR IGI LF L
Sbjct: 212 YLKAFKSADPAWFYLHVGCQSIAYIVGVAGWGTGLKLGSESASIQYD-AHRTIGIILFCL 270

Query: 216 ATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIV 275
            T+QVFALLLRPKPDHKYR YWNIYH  VGY++I+ S+ N+ KG S+L+P+ +W +AYI 
Sbjct: 271 GTLQVFALLLRPKPDHKYRFYWNIYHHLVGYSVIILSIINIFKGFSILNPDKKWKNAYIG 330

Query: 276 TAISSGIISAALEAITWTIVVKRKKAS-EEKQNQRTNGVNEANGHAAR 322
              +    +  LE  TW +VVKRK++    K     NG N  NG  AR
Sbjct: 331 VIAALAFNAVWLEGYTWYLVVKRKRSEIAGKMPHGMNGSNGVNGFGAR 378

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89257512|gb|ABD65002.1| hypothetical protein 26.t00022 [Brassica oleracea]

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 167/341 (48%), Positives = 217/341 (63%), Gaps = 30/341 (8%)

Query: 1   SFLHWTYDPSTNVVDLAFRRSTPS-SQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYT 59
           SFLH+TYD S+  + +A+R +  S  +WV WA+NP+   M G++  VA+  S G +RAYT
Sbjct: 49  SFLHYTYDSSSGNLQVAYRHNNLSPGKWVAWAVNPTSTGMVGAQAIVAYPISDGTVRAYT 108

Query: 60  SPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLHL-----------YSD------- 101
           SPI S   +LQEG LSF V+ ++AT   NE  +FA L L           + D       
Sbjct: 109 SPISSYQTSLQEGELSFNVSELSATYQNNEMIVFATLSLPLTNGGNINTVWQDGSLSGNS 168

Query: 102 --LHPITGDNARSVGTIDFRTGQIASNAGDF--DSRQRKRNFHQFLS-----ILMPMGAM 152
              HP +G N RSV T++  +G  AS +G    DS+ +KRN H  L+     I+MP+GA+
Sbjct: 169 LLPHPTSGSNIRSVSTLNLISGTSASTSGGGAGDSKLKKRNIHGILNAVSWGIMMPIGAI 228

Query: 153 MARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIAL 212
           +ARYL+V +   PAWFYLHV CQ SAYIIGVAGW TGI L S    +     HR IGIAL
Sbjct: 229 IARYLRVSKSAGPAWFYLHVTCQASAYIIGVAGWGTGIKLGSESEGIQFS-THRAIGIAL 287

Query: 213 FFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHA 272
           F LATVQVFA+ LRPKP+HKYRLYWNIYH  VGY +IV +V N+ KGL +L+PE QW +A
Sbjct: 288 FCLATVQVFAMFLRPKPEHKYRLYWNIYHHTVGYTVIVLAVVNIFKGLDILNPEKQWRNA 347

Query: 273 YIVTAISSGIISAALEAITWTIVVKRKKASE-EKQNQRTNG 312
           Y    ++ G+++A LE  TW +V+KR KA E  K +Q  NG
Sbjct: 348 YTAIIVTLGLVAAVLEGFTWYVVIKRGKAEESSKTSQLGNG 388

Source: Brassica oleracea

Species: Brassica oleracea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453588|ref|XP_004144538.1| PREDICTED: uncharacterized protein LOC101211761 [Cucumis sativus]

 Score =  307 bits (787), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 170/348 (48%), Positives = 214/348 (61%), Gaps = 31/348 (8%)

Query: 1   SFLHWTYDPSTNVVDLAFRR-STPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYT 59
           SFLHWT   S N + +AFRR +T  +QW+ WA+N     M GS+  VA+RNS+G   AYT
Sbjct: 49  SFLHWTLIQSNNTLRIAFRRPNTGPNQWIAWAINRQRLNMFGSQALVAYRNSSGIAHAYT 108

Query: 60  SPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLHLYSDL----------------- 102
           S + S TPTLQE S+SF+V  + AT V  E TIFA + L  +                  
Sbjct: 109 SDVNSPTPTLQESSISFQVPQLRATYVNQEMTIFATIILGDNETTINQVWQEGPLAGGSP 168

Query: 103 --HPITGDNARSVGTIDFRTGQIASNAGDFDSRQRKRNFHQFLS-----ILMPMGAMMAR 155
             H IT  N  S  T+D  TG   + A D     +KRN H  L+      +MPMGA+ AR
Sbjct: 169 ASHAITDANRASRTTLDLLTGSSTAAADDV---LKKRNTHGVLNAVSWGTMMPMGAIFAR 225

Query: 156 YLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDY-IHRNIGIALFF 214
           YLKVF+  +PAWFYLHV CQ SAY +GVAGWATGI L S   SL  +Y  HRNIGI LF 
Sbjct: 226 YLKVFKGADPAWFYLHVGCQASAYAVGVAGWATGIKLGS--DSLGIEYNTHRNIGITLFV 283

Query: 215 LATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYI 274
             T+QVFALLLRP  DHKYR+YWNIYH ++GY++IV S+ NV KGL +L+P+ +W  AY 
Sbjct: 284 FGTLQVFALLLRPNKDHKYRIYWNIYHHSIGYSVIVLSIINVFKGLDILNPDGKWKRAYT 343

Query: 275 VTAISSGIISAALEAITWTIVVKRKKASEEKQNQRTNGVNEANGHAAR 322
              I  G ++  LE ITW I +KRK+++ +K     NGVN  NG+A R
Sbjct: 344 GILIFLGAVAVVLEVITWIICIKRKRSNSDKFPHNVNGVNGINGNATR 391

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506899|ref|XP_004162878.1| PREDICTED: uncharacterized LOC101211761 [Cucumis sativus]

 Score =  307 bits (786), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 170/348 (48%), Positives = 214/348 (61%), Gaps = 31/348 (8%)

Query: 1   SFLHWTYDPSTNVVDLAFRR-STPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYT 59
           SFLHWT   S N + +AFRR +T  +QW+ WA+N     M GS+  VA+RNS+G   AYT
Sbjct: 49  SFLHWTLIQSNNTLRIAFRRPNTGPNQWIAWAINRQRLNMFGSQALVAYRNSSGIAHAYT 108

Query: 60  SPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLHLYSDL----------------- 102
           S + S TPTLQE S+SF+V  + AT V  E TIFA + L  +                  
Sbjct: 109 SDVNSPTPTLQESSISFQVPQLRATYVNQEMTIFATIILGDNETTINQVWQEGPLAGGSP 168

Query: 103 --HPITGDNARSVGTIDFRTGQIASNAGDFDSRQRKRNFHQFLS-----ILMPMGAMMAR 155
             H IT  N  S  T+D  TG   + A D     +KRN H  L+      +MPMGA+ AR
Sbjct: 169 ASHAITDANRASRTTLDLLTGSSTAAADDV---LKKRNTHGVLNAVSWGTMMPMGAIFAR 225

Query: 156 YLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDY-IHRNIGIALFF 214
           YLKVF+  +PAWFYLHV CQ SAY +GVAGWATGI L S   SL  +Y  HRNIGI LF 
Sbjct: 226 YLKVFKGADPAWFYLHVGCQASAYAVGVAGWATGIKLGS--DSLGIEYNTHRNIGITLFV 283

Query: 215 LATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYI 274
             T+QVFALLLRP  DHKYR+YWNIYH ++GY++IV S+ NV KGL +L+P+ +W  AY 
Sbjct: 284 FGTLQVFALLLRPNKDHKYRIYWNIYHHSIGYSVIVLSIINVFKGLDILNPDGKWKRAYT 343

Query: 275 VTAISSGIISAALEAITWTIVVKRKKASEEKQNQRTNGVNEANGHAAR 322
              I  G ++  LE ITW I +KRK+++ +K     NGVN  NG+A R
Sbjct: 344 GILIFLGAVAVVLEVITWIICIKRKRSNSDKFPHNVNGVNGINGNATR 391

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453535|ref|XP_004144512.1| PREDICTED: uncharacterized protein LOC101204790 [Cucumis sativus] gi|449529242|ref|XP_004171610.1| PREDICTED: uncharacterized protein LOC101227996 [Cucumis sativus]

 Score =  303 bits (777), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 162/330 (49%), Positives = 210/330 (63%), Gaps = 29/330 (8%)

Query: 1   SFLHWTYDPSTNVVDLAFRR-STPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYT 59
           SFLHWTY+PS + + +AFRR ST   QW+ WA+N     M GS+  +A+RNS+G    YT
Sbjct: 50  SFLHWTYNPSNSTLKIAFRRPSTAPDQWIAWAINQQDLAMFGSQALIAYRNSSGLPHVYT 109

Query: 60  SPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLHLYSDL----------------- 102
           S I    PT+Q+ SLSF V  ++AT    E TIFA ++L + L                 
Sbjct: 110 SSIERPFPTMQQSSLSFEVPQLSATYTNEEMTIFATINLPTGLTTINQVWQEGPMSQGSP 169

Query: 103 --HPITGDNARSVGTIDFRTGQIASNAGDFDSRQRKRNFHQFLS-----ILMPMGAMMAR 155
             H I GDN  S+GT++  TG   S+    DS  ++RN H  L+      LMPMGA+ AR
Sbjct: 170 ASHNIVGDNRLSLGTLNLLTG---SSTVAVDSVLKRRNIHGVLNAVSWGTLMPMGAIFAR 226

Query: 156 YLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFL 215
           YLKVF+  +PAWFYLHVACQ SAY +GVAGWATGI L  G S+  +   HRNIGIALF L
Sbjct: 227 YLKVFKAADPAWFYLHVACQTSAYAVGVAGWATGIKLG-GESAAVQYTTHRNIGIALFAL 285

Query: 216 ATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIV 275
            T+QVFALLLRP  DHKYR+YWNIYH ++GY++I+ S+ NV +GL +L PE +W  AY  
Sbjct: 286 GTLQVFALLLRPNKDHKYRIYWNIYHHSIGYSVIIMSIINVFEGLKILSPENKWRRAYTG 345

Query: 276 TAISSGIISAALEAITWTIVVKRKKASEEK 305
             I  G ++  LE ITW IV+KR++++  K
Sbjct: 346 VIIFLGAVAFVLELITWFIVIKRRRSNSNK 375

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
TAIR|locus:2168948	395	AT5G47530 [Arabidopsis thalian	0.621	0.518	0.523	1.2e-77
TAIR|locus:2130789	402	AT4G17280 [Arabidopsis thalian	0.633	0.519	0.516	2e-77
TAIR|locus:2123271	394	AT4G12980 "AT4G12980" [Arabido	0.609	0.510	0.488	2.3e-62
TAIR|locus:2090240	393	AT3G25290 "AT3G25290" [Arabido	0.612	0.513	0.488	2.3e-60
TAIR|locus:505006660	404	AT5G35735 "AT5G35735" [Arabido	0.906	0.740	0.435	5.1e-58
TAIR|locus:2077690	466	AT3G59070 [Arabidopsis thalian	0.615	0.435	0.351	3.7e-54
TAIR|locus:2049254	404	AT2G04850 [Arabidopsis thalian	0.7	0.571	0.326	3.5e-36
TAIR|locus:2156559	255	AT5G48750 [Arabidopsis thalian	0.290	0.376	0.479	8.6e-30
TAIR|locus:2091097	369	AT3G07570 [Arabidopsis thalian	0.469	0.420	0.308	4.7e-18
TAIR|locus:2076770	398	AT3G61750 [Arabidopsis thalian	0.566	0.469	0.318	1.3e-16

TAIR|locus:2168948 AT5G47530 [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
 Identities = 113/216 (52%), Positives = 151/216 (69%)

Query:   103 HPITGDNARSVGTIDF---RTGQIASNAGDFDSRQRKRNFHQFLS-----ILMPMGAMMA 154
             HP +G+N RSV T++     +G  ++ AG   S+ RKRN H  L+     I+MP+GA++A
Sbjct:   172 HPTSGNNVRSVSTLNLVSGASGSTSTGAGGA-SKLRKRNIHGILNGVSWGIMMPIGAIIA 230

Query:   155 RYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFF 214
             RYLKV +  +PAWFYLHV CQ SAYIIGVAGWATG+ L +  + +   + HR +GIALF 
Sbjct:   231 RYLKVSKSADPAWFYLHVFCQSSAYIIGVAGWATGLKLGNESAGIQFTF-HRAVGIALFC 289

Query:   215 LATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYI 274
             LAT+QVFA+ LRPKP+HKYR+YWNIYH  VGY++I+ +V NV KGL +L PE QW +AY 
Sbjct:   290 LATIQVFAMFLRPKPEHKYRVYWNIYHHTVGYSVIILAVVNVFKGLDILSPEKQWRNAYT 349

Query:   275 VTAISSGIISAALEAITWTIVVKRKKA-SEEKQNQR 309
                +  GI++  LE  TW +V+KR KA +  K +QR
Sbjct:   350 AIIVVLGIVAVVLEGFTWYVVIKRGKAEASAKTSQR 385

GO:0005886 "plasma membrane" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2130789 AT4G17280 [Arabidopsis thaliana (taxid:3702)]

 Score = 567 (204.7 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
 Identities = 112/217 (51%), Positives = 148/217 (68%)

Query:   103 HPITGDNARSVGTIDFRTGQIASNAG-DFDSRQRKRNFHQFLS-----ILMPMGAMMARY 156
             HP +G+N RSV T++  +G  A+  G    S+ RKRN H  L+     I+MP+GA++ARY
Sbjct:   181 HPTSGNNVRSVSTLNLVSGVSAAAGGAGGSSKLRKRNIHGILNGVSWGIMMPLGAIIARY 240

Query:   157 LKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLA 216
             L+V +  +PAWFY+HV CQ SAYIIGVAGWATG+ L      +     HR IGIALF LA
Sbjct:   241 LRVAKSADPAWFYIHVFCQASAYIIGVAGWATGLKLGGDSPGIQYS-THRAIGIALFSLA 299

Query:   217 TVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVT 276
             TVQVFA+ LRPKP+HK+RLYWNIYH  +GY II+  V NV KGL +L P+ QW +AYI  
Sbjct:   300 TVQVFAMFLRPKPEHKHRLYWNIYHHTIGYTIIILGVVNVFKGLGILSPKKQWKNAYIGI 359

Query:   277 AISSGIISAALEAITWTIVVKRKKA-SEEKQNQRTNG 312
              +   I++  LEA TW +V+KR+K  ++  Q+  +NG
Sbjct:   360 IVVLAIVATLLEAFTWYVVIKRRKLEAKTAQHGASNG 396

GO:0005576 "extracellular region" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2123271 AT4G12980 "AT4G12980" [Arabidopsis thaliana (taxid:3702)]

 Score = 526 (190.2 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
 Identities = 104/213 (48%), Positives = 141/213 (66%)

Query:   103 HPITGDNARSVGTIDFRTGQ-----IASNAGDFDSRQRKRNFHQFLS-----ILMPMGAM 152
             H  +G N  SVG++D  TG      ++   G  +SR  KRN H  L+     +L P+GAM
Sbjct:   180 HDFSGPNLNSVGSLDL-TGTTPGVPVSGGGGAGNSRIHKRNIHGILNAVSWGLLFPIGAM 238

Query:   153 MARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIAL 212
             +ARY+++F   +PAWFYLHV+CQ SAY+IGVAGWATG+ L S    +  +  HRNIGI L
Sbjct:   239 IARYMRIFESADPAWFYLHVSCQFSAYVIGVAGWATGLKLGSESKGIQYN-THRNIGICL 297

Query:   213 FFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHA 272
             F +AT+Q+FA+LLRP+ DHK+R  WNIYH  VGY+I++  + NV KGLS+L+P+  +  A
Sbjct:   298 FSIATLQMFAMLLRPRKDHKFRFVWNIYHHGVGYSILILGIINVFKGLSILNPKHTYKTA 357

Query:   273 YIVTAISSGIISAALEAITWTIVVKRKKASEEK 305
             YI    + G I+  LE +TW IV+KRK A   K
Sbjct:   358 YIAVIGTLGGITLLLEVVTWVIVLKRKSAKSTK 390

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2090240 AT3G25290 "AT3G25290" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
 Identities = 103/211 (48%), Positives = 138/211 (65%)

Query:   103 HPITGDNARSVGTIDFR---TGQIASNAGDFDSRQRKRNFHQFLS-----ILMPMGAMMA 154
             H     N  S+ ++D +   +G   S   + +++ + RN H  L+     IL P+GA++A
Sbjct:   180 HAFDSANLASMSSLDLKGDNSGGTISGGDEVNAKIKNRNIHGILNAVSWGILFPIGAIIA 239

Query:   155 RYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFF 214
             RY++VF   +PAWFYLHV+CQ SAY+IGVAGWATG+ L +    + R   HRNIGIALF 
Sbjct:   240 RYMRVFDSADPAWFYLHVSCQFSAYVIGVAGWATGLKLGNESEGI-RFSAHRNIGIALFT 298

Query:   215 LATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYI 274
             LAT+Q+FA+LLRPK DHKYR YWNIYH  VGYAI+   + NV KGL++L P+  +  AYI
Sbjct:   299 LATIQMFAMLLRPKKDHKYRFYWNIYHHGVGYAILTLGIINVFKGLNILKPQDTYKTAYI 358

Query:   275 VTAISSGIISAALEAITWTIVVKRKKASEEK 305
                   G I+  LEAITW +V+KRK  +  K
Sbjct:   359 AVIAVLGGIALLLEAITWVVVLKRKSNNSMK 389

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:505006660 AT5G35735 "AT5G35735" [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 144/331 (43%), Positives = 192/331 (58%)

Query:     1 SFLHWTYDPS-TNVVD----LAFRRSTPSS-QWVTWALNPSGQRMAGSKCHVAFRNSTGA 54
             S++ W  +PS T +V     +AF  +T +  Q  T +++  G R+  S   ++F      
Sbjct:    77 SWVAWGLNPSSTQMVGTQALVAFTNTTTNQFQAYTSSVSSYGTRLERSS--LSF-----G 129

Query:    55 IRAYTSPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLHLYSDLHPITGDNARSVG 114
             +   ++ + SG  T+   +L      ITA  +   W +   ++     H  +GDN RS G
Sbjct:   130 VSGLSATLVSGEVTIF-ATLELSPNLITANQL---WQVGPVVNGVPASHQTSGDNMRSSG 185

Query:   115 TIDFRTGQIASNAGDFDSRQRKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFY 169
              IDFRTGQ ++  G    R RKRN H  L+     +LMPMGAMMARY+KVF   +P WFY
Sbjct:   186 RIDFRTGQASAGGGGSGDRLRKRNTHGVLNAVSWGVLMPMGAMMARYMKVF--ADPTWFY 243

Query:   170 LHVACQVSAYIIGVAGWATGIDLSSGISSLNRDY-IHRNIGIALFFLATVQVFALLLRPK 228
             LH+A QVS Y+IGVAGWATGI L  G  S    Y  HRN+GIALF  AT+QVFALL+RPK
Sbjct:   244 LHIAFQVSGYVIGVAGWATGIKL--GNDSPGTSYSTHRNLGIALFTFATLQVFALLVRPK 301

Query:   229 PDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTAISSGIISAALE 288
             PDHKYR YWN+YH  VGY  I+ S+ N+ KG  +LDPE +W  AYI   I  G     LE
Sbjct:   302 PDHKYRTYWNVYHHTVGYTTIILSIVNIFKGFDILDPEDKWRWAYIGILIFLGACVLILE 361

Query:   289 AITWTIVVKRKK-----ASEEKQNQRTNGVN 314
              +TW IV++RK       +    ++ +NGVN
Sbjct:   362 PLTWFIVLRRKSRGGNTVAAPTSSKYSNGVN 392

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

TAIR|locus:2077690 AT3G59070 [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
 Identities = 76/216 (35%), Positives = 118/216 (54%)

Query:   102 LHPITGDNARSVGTIDFRTGQIASNAGDFDSRQRKRNFHQFLS-----ILMPMGAMMARY 156
             +H ++GDN +S+ ++D  +GQ+ +      +    +  H  ++     ILMP+G M ARY
Sbjct:   182 MHAMSGDNLKSMASLDLLSGQVTTTKSVNRNMLLVKQIHAIVNALSWGILMPIGVMAARY 241

Query:   157 LKVFRFGNPAWFYLHVACQVSAYIIG-VAGWATGIDLSSGISSLNRDYIHRNIGIALFFL 215
             +K +   +P WFY+HV CQ + Y  G + G  T I ++       R  +H  IG+ LF L
Sbjct:   242 MKNYEVLDPTWFYIHVVCQTTGYFSGLIGGLGTAIYMARHTGM--RTTLHTVIGLLLFAL 299

Query:   216 ATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAY-- 273
               +Q+ +L  RP  DHKYR YWN YH  +GY +IV S++N+ KGLS+L P   W  AY  
Sbjct:   300 GFLQILSLKARPNKDHKYRKYWNWYHHTMGYIVIVLSIYNIYKGLSILQPGSIWKIAYTT 359

Query:   274 IVTAISS-GIISAALE-AITWT-IVVKRKKASEEKQ 306
             I+  I++  ++   L+    W  +  K+ K  E  Q
Sbjct:   360 IICCIAAFAVVMEILQFKKRWARLFFKKSKDVEADQ 395

GO:0005886 "plasma membrane" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2049254 AT2G04850 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 79/242 (32%), Positives = 123/242 (50%)

Query:    84 TLVGNEWTIFARLHLYSD-LHPITGDNARSVGTIDFRTGQIASNAGDFDSRQRKRNFHQF 142
             T + + W     +  YS  +HP T  +  S  T D  +G    N     SR  K      
Sbjct:   164 TKIHHVWNRGLYVQGYSPTIHPTTSTDLSSFSTFDVTSGFATVNQNS-GSRALKVTHGVV 222

Query:   143 LSI----LMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISS 198
              +I    L+P GA+ ARYL+  +   P WFY+H A Q++ +++G  G++ GI L  G +S
Sbjct:   223 NAISWGFLLPAGAVTARYLRQMQSIGPTWFYIHAAIQLTGFLLGTIGFSIGIVL--GHNS 280

Query:   199 LNRDY-IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVL 257
                 Y +HR++GIA F  A +Q  ALL RPK  +K+R YW  YH  VGYA +V  V NV 
Sbjct:   281 PGVTYGLHRSLGIATFTAAALQTLALLFRPKTTNKFRRYWKSYHHFVGYACVVMGVVNVF 340

Query:   258 KGLSLLDPEIQWWHAYIVTAISSGI-ISAALEAITWTIVVKRKKASEEKQNQRTNGVNEA 316
             +G  +L     +        +S+ + +  A+E  +W +  ++ K  + K++  T GV+  
Sbjct:   341 QGFEVLREGRSYAKLGYCLCLSTLVGVCVAMEVNSWVVFCRKAKEEKMKRDGLT-GVDRC 399

Query:   317 NG 318
             +G
Sbjct:   400 SG 401

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2156559 AT5G48750 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 8.6e-30, Sum P(2) = 8.6e-30
 Identities = 47/98 (47%), Positives = 67/98 (68%)

Query:     1 SFLHWTYDPSTNVVDLAFRRST-PSSQWVTWALNPSGQRMAGSKCHVAFRNST-GAIRAY 58
             SFLH++Y   T V+++A+R +   SS W+ W +NP+ + M G++  +A+RNST G +RAY
Sbjct:    56 SFLHYSYVRETGVLEVAYRHTNIESSSWIAWGINPTSKGMIGAQTLLAYRNSTSGFMRAY 115

Query:    59 TSPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARL 96
             TS I   TP LQEG LSFRVT ++A  +  E TIFA +
Sbjct:   116 TSSINGYTPMLQEGPLSFRVTQLSAEYLNREMTIFATM 153

GO:0005886 "plasma membrane" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0030198 "extracellular matrix organization" evidence=ISS

TAIR|locus:2091097 AT3G07570 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 4.7e-18, P = 4.7e-18
 Identities = 50/162 (30%), Positives = 88/162 (54%)

Query:   115 TIDFRTGQIASNAGDFDSRQRKRN--FHQF-LSILMPMGAMMARYLKVFRFGNPAWFYLH 171
             TI++ TG  +       S+ +K +   + F   IL+ +GA++AR++K +   +P WFY H
Sbjct:   190 TINYNTGSQSVVKVSPHSKLKKTHGLMNMFGWGILIIVGAIVARHMKQW---DPTWFYAH 246

Query:   172 VACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDH 231
             +A Q + +++G+ G   G+ L + + + N    H+ +GI +  +  +Q+ ALL RP    
Sbjct:   247 IALQTTGFLLGLTGVICGLVLENRLKANNVSK-HKGLGITILVMGVLQMLALLARPDKQS 305

Query:   232 KYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAY 273
             KYR YWN YH  +G  +I+ ++ N+  G+ L      W   Y
Sbjct:   306 KYRKYWNWYHHNIGRLLIILAISNIFYGIHLAKAGTSWNGGY 347

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2076770 AT3G61750 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 65/204 (31%), Positives = 100/204 (49%)

Query:    74 LSFRVTNITATLVGNEWTIFARLHLY-SDLHPITGDNARSVGTIDFRTGQIASNAGDFDS 132
             L+F+V    A  V     I A    Y S L  +T  + ++   +DF     A++     S
Sbjct:   157 LAFQVK--FAVRVPRRAVILAFSTAYPSKLGRLTKHDDKTTVIVDFSKASGATSIKTTTS 214

Query:   133 RQRKRNFHQFLSIL-----MPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWA 187
              ++ +  H  ++IL     +P+GA++ARYL   R  +P W+YLH+  Q + +I G+A   
Sbjct:   215 TEKTK--HGVMAILGWGFLLPVGAILARYL---RHKDPLWYYLHIGFQFTGFIFGLAAVI 269

Query:   188 TGIDLSSGISSLNRDY-IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGY 246
              GI L + I     D   HR IGI L  L+T+QV A   RP+ + K R YWN YH  +G 
Sbjct:   270 LGIQLYNRIQP---DIPAHRGIGIFLLVLSTLQVLAFFARPQKETKMRRYWNWYHHWIGR 326

Query:   247 AIIVTSVFNVLKGLSLLDPEIQWW 270
               +     N++ G+ + D     W
Sbjct:   327 ISLFFGAVNIVLGIRMADNGGDGW 350

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_XVI0047 hypothetical protein (383 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	330
cd09629	152	cd09629, DOMON_CIL1_like, DOMON-like domain of Bra	4e-40
cd08760	191	cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrom	4e-38
smart00665	129	smart00665, B561, Cytochrome b-561 / ferric reduct	1e-29
pfam04526	101	pfam04526, DUF568, Protein of unknown function (DU	3e-20
smart00664	148	smart00664, DoH, Possible catecholamine-binding do	7e-06

>gnl|CDD|187687 cd09629, DOMON_CIL1_like, DOMON-like domain of Brassica carinata CIL1 and similar proteins

 Score =  137 bits (348), Expect = 4e-40
 Identities = 57/141 (40%), Positives = 77/141 (54%), Gaps = 21/141 (14%)

Query: 1   SFLHWTYDPSTNVVDLAFRRSTPS-SQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYT 59
           + LHWTY+ S + +D+AFR + PS S WV W +NP+G  M G++  VAFRNS G++  YT
Sbjct: 12  ASLHWTYNASNSTLDVAFRATPPSSSGWVAWGINPTGTGMVGTQALVAFRNSNGSVLVYT 71

Query: 60  SPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLHLYSDL----------------- 102
             I S T   +   LSF V++++A   G E TIFA L L S+L                 
Sbjct: 72  YNITSYTKLGEPLPLSFDVSDLSAEYSGGEMTIFATLKLPSNLTSVNHVWQVGPAVTGGS 131

Query: 103 ---HPITGDNARSVGTIDFRT 120
              HP +G N  S GT+D  T
Sbjct: 132 PGPHPTSGANLASKGTLDLLT 152

Brassica carinata CIL1 has been described as involved in suppression of axillary meristem development. It contains a single DOMON domain, the function of which is unclear. Members in this diverse family of plant proteins may have a cytochrome b561 domain C-terminal to the DOMON domain, some members from Arabidopsis have been characterized as auxin-responsive or auxin-induced proteins. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases. Length = 152

>gnl|CDD|176490 cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrome b(561), including the FRRS1 gene product

 Score =  134 bits (338), Expect = 4e-38
 Identities = 61/195 (31%), Positives = 88/195 (45%), Gaps = 19/195 (9%)

Query: 110 ARSVGTIDFRTGQIAS--------NAGDFDSRQRKRNFHQFLS-----ILMPMGAMMARY 156
           ++S  ++D  +G  +S        N     S       H  L      ILMP+GA++ARY
Sbjct: 1   SKSSYSLDLASGTSSSGGSPFLLPNGSSVGSSDTLIKAHGVLMAIAWGILMPIGALLARY 60

Query: 157 LKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLA 216
              F  G+P WFYLH   Q+ A ++ +AG+  GI L  G      +  H  +GI +  LA
Sbjct: 61  ---FLLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLVQGGGGSLNNA-HAILGIIVLALA 116

Query: 217 TVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQ--WWHAYI 274
            +Q    LLRP P  K R  WN  H  +G A ++ ++ N+  GL L        W  AY 
Sbjct: 117 ILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFLGLDLAGAGTPKAWKIAYG 176

Query: 275 VTAISSGIISAALEA 289
           V      ++   LE 
Sbjct: 177 VVVAVLALVYLILEI 191

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. Length = 191

>gnl|CDD|214769 smart00665, B561, Cytochrome b-561 / ferric reductase transmembrane domain

 Score =  109 bits (275), Expect = 1e-29
 Identities = 40/119 (33%), Positives = 55/119 (46%), Gaps = 4/119 (3%)

Query: 145 ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYI 204
            LM    ++AR L       P WF LHV  Q+ A ++GV G        +     N   +
Sbjct: 12  FLMGEAILVARPL-TRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSL 70

Query: 205 HRNIGIALFFLATVQVFALLLRPKPD---HKYRLYWNIYHWAVGYAIIVTSVFNVLKGL 260
           H  +G+A F LA +Q  +  LRP P     KYR Y N YH  VG A  + ++  +  GL
Sbjct: 71  HSWLGLAAFVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL 129

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders. Length = 129

>gnl|CDD|191019 pfam04526, DUF568, Protein of unknown function (DUF568)

 Score = 83.9 bits (208), Expect = 3e-20
 Identities = 42/101 (41%), Positives = 56/101 (55%), Gaps = 21/101 (20%)

Query: 39  MAGSKCHVAFRNS-TGAIRAYTSPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLH 97
           M GS+  VAFR+S +GA+R YTS I S + +LQEG LSF V +++A     E TIFA L 
Sbjct: 1   MVGSQALVAFRDSSSGAVRVYTSNISSYSTSLQEGPLSFDVPDLSAEESNGEVTIFATLK 60

Query: 98  LYS--------------------DLHPITGDNARSVGTIDF 118
           L +                     +HP +GDN RS+GT+D 
Sbjct: 61  LPANTTKVNQVWQVGPVVTGGSPGIHPTSGDNLRSMGTLDL 101

Family of uncharacterized plant proteins. Length = 101

>gnl|CDD|214768 smart00664, DoH, Possible catecholamine-binding domain present in a variety of eukaryotic proteins

 Score = 45.1 bits (107), Expect = 7e-06
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 1  SFLHWTYDPSTNVVDLAFRRSTPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYTS 60
           FL W+ D   N +       T ++ WV    +P GQ MAG+   VA+ ++ G +     
Sbjct: 4  YFLSWSVD-GENSIAFELSGPTSTNGWVAIGFSPDGQ-MAGADVVVAWVDNNGRVTVKDY 61

Query: 61 PIGSGTPTLQEGSLSFRVT-NITATLVGNEWTIFAR 95
                P +++      VT  ++AT      T   R
Sbjct: 62 YTPGYGPPVED--DQQDVTDLLSATYENGVLTCRFR 95

A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press). Length = 148

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	330
KOG4293	403	consensus Predicted membrane protein, contains DoH	100.0
cd08760	191	Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561),	99.97
smart00665	129	B561 Cytochrome b-561 / ferric reductase transmemb	99.92
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	99.88
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	99.86
cd08766	144	Cyt_b561_ACYB-1_like Plant cytochrome b(561), incl	99.83
cd08764	214	Cyt_b561_CG1275_like Non-vertebrate eumetazoan cyt	99.82
cd08761	183	Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561	99.82
PLN02351	242	cytochromes b561 family protein	99.81
cd08762	179	Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB	99.8
cd08765	153	Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBR	99.79
PLN02810	231	carbon-monoxide oxygenase	99.79
PLN02680	232	carbon-monoxide oxygenase	99.78
cd08763	143	Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB5	99.77
KOG1619	245	consensus Cytochrome b [Energy production and conv	99.75
smart00664	148	DoH Possible catecholamine-binding domain present	99.68
PF03351	124	DOMON: DOMON domain; InterPro: IPR005018 The DOMON	99.63
PF04526	101	DUF568: Protein of unknown function (DUF568); Inte	99.31
PF10348	105	DUF2427: Domain of unknown function (DUF2427); Int	98.84
cd00241	184	CDH_cytochrome Cellobiose dehydrogenase (Cellobios	98.31
KOG3568	603	consensus Dopamine beta-monooxygenase [Amino acid	98.14
PF13301	175	DUF4079: Protein of unknown function (DUF4079)	96.94
cd08760	191	Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561),	96.79
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	96.7
smart00665	129	B561 Cytochrome b-561 / ferric reductase transmemb	96.6
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	96.28
cd08761	183	Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561	96.2
cd08763	143	Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB5	96.0
cd08764	214	Cyt_b561_CG1275_like Non-vertebrate eumetazoan cyt	95.88
cd08766	144	Cyt_b561_ACYB-1_like Plant cytochrome b(561), incl	95.48
PLN02680	232	carbon-monoxide oxygenase	94.26
PF10348	105	DUF2427: Domain of unknown function (DUF2427); Int	94.26
cd08762	179	Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB	94.1
PLN02351	242	cytochromes b561 family protein	93.09
PF00033	188	Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; I	92.61
cd08765	153	Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBR	91.84
PLN02810	231	carbon-monoxide oxygenase	91.52
PF08507	136	COPI_assoc: COPI associated protein; InterPro: IPR	91.19
PF13172	34	PepSY_TM_1: PepSY-associated TM helix	89.93
PF10856	118	DUF2678: Protein of unknown function (DUF2678); In	89.21
COG5658	204	Predicted integral membrane protein [Function unkn	84.98
PF13630	76	SdpI: SdpI/YhfL protein family	84.21
PF13706	37	PepSY_TM_3: PepSY-associated TM helix	84.16
PF00033	188	Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; I	83.09
PRK10179	217	formate dehydrogenase-N subunit gamma; Provisional	83.09
KOG1619	245	consensus Cytochrome b [Energy production and conv	82.97
PF13301	175	DUF4079: Protein of unknown function (DUF4079)	82.12
PF10067	103	DUF2306: Predicted membrane protein (DUF2306); Int	80.41

>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]

Probab=100.00  E-value=8.3e-35  Score=284.95  Aligned_cols=309  Identities=38%  Similarity=0.669  Sum_probs=250.4

Q ss_pred             CeeeEEEeCCCCEEEEEEEEcCCCCcEEEEEEcCCCCCCCCCCeEEEEEcC-CCcEEEEEeecCCCCCCCCCCCcceeee
Q 036242            1 SFLHWTYDPSTNVVDLAFRRSTPSSQWVTWALNPSGQRMAGSKCHVAFRNS-TGAIRAYTSPIGSGTPTLQEGSLSFRVT   79 (330)
Q Consensus         1 ~~l~W~~~~~~~~i~~~~~~~~~~~gWVavGfs~~g~~M~gsd~vI~~~~~-~G~v~v~~~~~~g~~~p~~~~~~~~~l~   79 (330)
                      +.++++|+.+++.+++.|.+. +...|++++++|++.+|.++.+++++.++ +|...+.++...++.+...+..+.+++.
T Consensus        47 ~~i~~~~~~~~~~~~i~~~~~-~~~~w~~~~~~p~~t~m~~~~~~va~~~~~~g~~~~~t~~~~~~~~s~~~~~~~~~~~  125 (403)
T KOG4293|consen   47 SFIHYTYNSANGVLSIAFSAP-LSSAWVAWAINPTGTGMVGSRALVAYAGSSSGATTVKTYVILGYSPSLVPALLSFTLG  125 (403)
T ss_pred             ceEEEEEecCCCeEEEEEecC-CcccccccccCCccccccccceeeeeeccccchhhceeeeecccchhhcccccceeee
Confidence            578999999999999999985 34559999999999669999999999976 7789999999999875434444566777


Q ss_pred             eeeEEEECCE---EEEEEEEecC---C-------------------CCCCCCCCCCcceeEEEeec--CccccCC--CCC
Q 036242           80 NITATLVGNE---WTIFARLHLY---S-------------------DLHPITGDNARSVGTIDFRT--GQIASNA--GDF  130 (330)
Q Consensus        80 ~~s~~~~~g~---~~~~~~~~l~---~-------------------~~h~~~~~~~~s~~~~dl~s--G~~~~~~--~~~  130 (330)
                      +...+.+...   ..+|+++++.   .                   ..|+.++.+..+...+|++.  |......  ...
T Consensus       126 ~~~~~~~~~~~~~~~if~~~~l~~~~~~~~~~~w~~~~~~~~g~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  205 (403)
T KOG4293|consen  126 NVRAECNLRSSSPIGIFASFKLAGANGGKYSAVWQVGPTGSGGGRPKRHKLSGSNLASVTSLDLTSDIGELSITSEGNFN  205 (403)
T ss_pred             cCcchhhccCCCCceEEEEEEeecCCCceeEEEEEccCCccCCCCCccCccccCCccceeecccccccccccccccCccc
Confidence            7666664444   6788887666   1                   23555555555555666654  3332111  101


Q ss_pred             CccchhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCccc-c
Q 036242          131 DSRQRKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDY-I  204 (330)
Q Consensus       131 ~~~~~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~-~  204 (330)
                      .+...+...||++|     +++|.|++.+||+|..+.+.+.||++|+.+|..++++.+.|+..+....+  ++.+..+ .
T Consensus       206 ~~~~~~~~~hgil~~~sw~il~p~g~i~ary~~~~~~~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~--~s~~~~~~~  283 (403)
T KOG4293|consen  206 SSGLKLRMTHGILNALSWGILFPAGAIIARYLRQKPSGDPTWFYIHRACQFTGFILGVAGFVDGLKLSN--ESDGTVYSA  283 (403)
T ss_pred             CcchhccccHHHHhhhhhheeccccceeEEEecccCCCCcchhhhhhhheeeEEEEEeeeeeeeEEEcc--CCCceeeee
Confidence            33445667799999     99999999999999987679999999999999999999999999888776  4545555 9


Q ss_pred             cchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCCcchh-hHHHHHHHHHHHH
Q 036242          205 HRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWW-HAYIVTAISSGII  283 (330)
Q Consensus       205 H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~~~-~~~~~~v~~~~~~  283 (330)
                      |..+|+.++++.++|++..++||.+++|.|++|||+|+..||..+++|++|++.|+.+.++...|. +.|+...+...++
T Consensus       284 h~~~G~~~~~l~~lQ~~~~l~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l~~~~~~w~~~~~~~~~~~~~~~  363 (403)
T KOG4293|consen  284 HTDLGIILLVLAFLQPLALLLRPLPESKIRRYWNWYHHLVGRLSIILGIVNIFDGLELLYPGQSWIKLGYGSILAVLGLI  363 (403)
T ss_pred             cccchhHHHHHHHHHHHHHHhcCCcccCceeccceeeeecCcceeeehhhHHhhhHhhhcCCCceEEeeeeeEEEEechh
Confidence            999999999999999999999999999999999999999999999999999999999999999998 6999999999999


Q ss_pred             HHHHhheeeeeeeeechhhhhhhcccccC
Q 036242          284 SAALEAITWTIVVKRKKASEEKQNQRTNG  312 (330)
Q Consensus       284 ~i~lev~~~~~~~~~~~~~~~~~~~~~~~  312 (330)
                      .+.+|+.+|+..++|.+.++..+.....+
T Consensus       364 ~~~le~~~~~~~~~~~~~~~~~~~~~~~~  392 (403)
T KOG4293|consen  364 AVILEILSWRITIERPSPSSMSRTSTNAP  392 (403)
T ss_pred             hhhhhhheeeeeecccCcccccccccCcc
Confidence            99999999988888877776655555444

>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product

Probab=99.97  E-value=2e-30  Score=230.30  Aligned_cols=174  Identities=33%  Similarity=0.542  Sum_probs=150.0

Q ss_pred             ceeEEEeecCccccCCCC--------CCccchhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHH
Q 036242          112 SVGTIDFRTGQIASNAGD--------FDSRQRKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSA  178 (330)
Q Consensus       112 s~~~~dl~sG~~~~~~~~--------~~~~~~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~  178 (330)
                      ++.++|+++|+++.....        ..+.+..+++||+||     +++|.|++++||++.   +++.||++|+.+|+++
T Consensus         3 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~---~~~~~~~~H~~~q~~~   79 (191)
T cd08760           3 SSYSLDLASGTSSSGGSPFLLPNGSSVGSSDTLIKAHGVLMAIAWGILMPIGALLARYFLL---GDPVWFYLHAGLQLLA   79 (191)
T ss_pred             cceEEEeccceeccCCCcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCchhHHHHHHHHHHH
Confidence            556888888776433210        023467899999999     999999999999743   5688999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 036242          179 YIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLK  258 (330)
Q Consensus       179 ~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~  258 (330)
                      ++++++|+++++.... .+.+++.+.|+++|+++++++++|+++|++||.+..+.|+.|+++|+++|+++++||++|+++
T Consensus        80 ~~~~i~g~~~~~~~~~-~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~  158 (191)
T cd08760          80 VLLAIAGFVLGIVLVQ-GGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFL  158 (191)
T ss_pred             HHHHHHHHHHHHHhhc-cCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999751 134567779999999999999999999999999988899999999999999999999999999


Q ss_pred             hccccCCC--cchhhHHHHHHHHHHHHHHHHhh
Q 036242          259 GLSLLDPE--IQWWHAYIVTAISSGIISAALEA  289 (330)
Q Consensus       259 Gl~l~~~~--~~~~~~~~~~v~~~~~~~i~lev  289 (330)
                      |+.+...+  +.+.++|.+++++.+++++++|+
T Consensus       159 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  191 (191)
T cd08760         159 GLDLAGAGTPKAWKIAYGVVVAVLALVYLILEI  191 (191)
T ss_pred             HHHHhcCCcccchhhHHHHHHHHHHHHHHHHcC
Confidence            99999876  77888999999999999988874

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain

Probab=99.92  E-value=6.4e-25  Score=183.17  Aligned_cols=120  Identities=34%  Similarity=0.550  Sum_probs=107.9

Q ss_pred             hhhhhH-----hhhhhhHHHHhh-hcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHH
Q 036242          139 FHQFLS-----ILMPMGAMMARY-LKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIAL  212 (330)
Q Consensus       139 ~Hg~lM-----il~p~gi~~aR~-~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~  212 (330)
                      +||++|     +++|.|++++|| .+..  +++.||++|+.+|+++++++++|+++++...+..+.+++.++|+++|+++
T Consensus         1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~--~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~~~~~~s~H~~lGl~~   78 (129)
T smart00665        1 LHPVLMILGFGFLMGEAILVARPLTRFL--SKPTWFLLHVVLQILALVLGVIGLLAIFISHNESGIANFYSLHSWLGLAA   78 (129)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhHhhcc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCccchhHHHHHHH
Confidence            699999     899999999998 3332  57889999999999999999999999999887433457888999999999


Q ss_pred             HHHHHHHHhheeeccCCC---CCCcchhhHHHHHHHHHHHHHHHHHHHHhc
Q 036242          213 FFLATVQVFALLLRPKPD---HKYRLYWNIYHWAVGYAIIVTSVFNVLKGL  260 (330)
Q Consensus       213 ~~l~~~Q~l~g~~rp~~~---~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl  260 (330)
                      +++.++|++.|++||.++   .+.|+.++++|+++|+++++||++|+++|+
T Consensus        79 ~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~  129 (129)
T smart00665       79 FVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL  129 (129)
T ss_pred             HHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            999999999999998776   678899999999999999999999999995

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=99.88  E-value=3.6e-22  Score=167.80  Aligned_cols=123  Identities=29%  Similarity=0.435  Sum_probs=107.2

Q ss_pred             hhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHHH
Q 036242          139 FHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALF  213 (330)
Q Consensus       139 ~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~  213 (330)
                      +||+||     +++|.|++++|+.+..+.+++.|+++|+.+|.+++++.++|+++++...+..+.+++.+.|+++|++++
T Consensus         1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~~~h~~s~H~~lG~~~~   80 (137)
T PF03188_consen    1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNGKPHFKSWHSILGLATF   80 (137)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCchhhhhHHHH
Confidence            699999     889999999997441123678899999999999999999999999998875455778889999999999


Q ss_pred             HHHHHHHhheeecc---CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcc
Q 036242          214 FLATVQVFALLLRP---KPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLS  261 (330)
Q Consensus       214 ~l~~~Q~l~g~~rp---~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~  261 (330)
                      ++.++|++.|++++   ..+.+.|+.++++|+++|++++++|++|+.+|+.
T Consensus        81 ~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~  131 (137)
T PF03188_consen   81 VLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLT  131 (137)
T ss_pred             HHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998764   4555678889999999999999999999999984

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=99.86  E-value=7.3e-22  Score=165.05  Aligned_cols=122  Identities=23%  Similarity=0.337  Sum_probs=107.3

Q ss_pred             hhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHH
Q 036242          137 RNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIA  211 (330)
Q Consensus       137 ~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~  211 (330)
                      +++||+||     +++|.|++++|++|..  +++.|+++|+.+|++++++.++|+++++...+..+.+++.+.|+++|++
T Consensus         2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~--~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~~~h~~s~Hs~lGl~   79 (131)
T cd08554           2 FNWHPLLMVIGFVFLMGEALLVYRVFRLL--TKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLYSLHSWLGLA   79 (131)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhcccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchhHHHHHHHH
Confidence            57999999     7999999999998765  5678999999999999999999999999987532455777899999999


Q ss_pred             HHHHHHHHHhheeec---cCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhc
Q 036242          212 LFFLATVQVFALLLR---PKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGL  260 (330)
Q Consensus       212 ~~~l~~~Q~l~g~~r---p~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl  260 (330)
                      ++++.++|++.|+.+   |.+..+.|+.++++|+++|+++++++++|+++|+
T Consensus        80 ~~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~  131 (131)
T cd08554          80 TVLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI  131 (131)
T ss_pred             HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999998765   4443446889999999999999999999999984

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1

Probab=99.83  E-value=1.3e-20  Score=159.25  Aligned_cols=128  Identities=17%  Similarity=0.176  Sum_probs=112.2

Q ss_pred             ccchhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccc
Q 036242          132 SRQRKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHR  206 (330)
Q Consensus       132 ~~~~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~  206 (330)
                      ++.+++++|+.||     ++++-|+++.|..|.   .++.|..+|+.+|.+++++.++|++.++..++..+.+++.++|+
T Consensus         3 ~~~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~---~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHS   79 (144)
T cd08766           3 NKGLIFNVHPVLMVIGFIFLAGEAILAYKTVPG---SREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHS   79 (144)
T ss_pred             CCcceeeccHHHHHHHHHHHHHHHHHHhhcccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHH
Confidence            4568999999999     788999999997664   46678999999999999999999999999887545567788999


Q ss_pred             hhhHHHHHHHHHHHhhee---eccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 036242          207 NIGIALFFLATVQVFALL---LRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSL  262 (330)
Q Consensus       207 ~iGi~~~~l~~~Q~l~g~---~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l  262 (330)
                      |+|++++++..+|++.|+   +.|....+.|+...++|+++|++++++|++++.+|+..
T Consensus        80 wlGl~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~lGl~e  138 (144)
T cd08766          80 WLGIGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAETGLLE  138 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999884   57886666788888899999999999999999999864

Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561)

Probab=99.82  E-value=8e-20  Score=163.61  Aligned_cols=167  Identities=18%  Similarity=0.135  Sum_probs=129.3

Q ss_pred             chhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCc--cCCCcccccc
Q 036242          134 QRKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGI--SSLNRDYIHR  206 (330)
Q Consensus       134 ~~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~--~~~~~~~~H~  206 (330)
                      ...+++|++||     +++..|+++.|.+|..  .+..+..+|..+|.++++++++|+.++|..++..  +.+++.++|+
T Consensus        21 ~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~--~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHS   98 (214)
T cd08764          21 GLQFNWHPLLMVLGLIFLYGNSILVYRVFRNT--RKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHS   98 (214)
T ss_pred             CceEeecHHHHHHHHHHHHHHHHHHhccCccc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHH
Confidence            46799999999     8889999999987753  4566888999999999999999999999887643  4457777999


Q ss_pred             hhhHHHHHHHHHHHhhee---eccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcccc--------C--CCcchhhHH
Q 036242          207 NIGIALFFLATVQVFALL---LRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLL--------D--PEIQWWHAY  273 (330)
Q Consensus       207 ~iGi~~~~l~~~Q~l~g~---~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~--------~--~~~~~~~~~  273 (330)
                      |+|++++++..+|++.|+   +.|......|+...++|+++|+++++++++++.+|+...        .  ++.......
T Consensus        99 wlGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~ek~~f~~~~~~~~~~e~~l~N~  178 (214)
T cd08764          99 WLGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITEKAFFSLNKYSNLPAEGVLGNF  178 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCChhHHHHHH
Confidence            999999999999999885   578765567777777899999999999999999999641        1  123344466


Q ss_pred             HHHHHHHHHHHHHHhheeeeeeeeechhhh
Q 036242          274 IVTAISSGIISAALEAITWTIVVKRKKASE  303 (330)
Q Consensus       274 ~~~v~~~~~~~i~lev~~~~~~~~~~~~~~  303 (330)
                      .++++++.++.|++-+..-. ++|+...|+
T Consensus       179 ~gl~~~~fg~~V~~~~~~~~-~kr~~~~~~  207 (214)
T cd08764         179 IGIVLVIFGGLVVYLVTEPD-YKRIELPEE  207 (214)
T ss_pred             HHHHHHHHHHHHHHhccCcc-cCCCCCchh
Confidence            66666666666666555332 344444444

Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product

Probab=99.82  E-value=1e-19  Score=160.59  Aligned_cols=129  Identities=17%  Similarity=0.181  Sum_probs=108.7

Q ss_pred             chhhhhhhhhH-----hhhhhhHHHHhhhccc-ccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccch
Q 036242          134 QRKRNFHQFLS-----ILMPMGAMMARYLKVF-RFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRN  207 (330)
Q Consensus       134 ~~~~~~Hg~lM-----il~p~gi~~aR~~k~~-~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~  207 (330)
                      ..++++||++|     +++|.|++..|-.... +.+++.|+++|+.+|.++++++++|+++++..++..+.+++.+.|++
T Consensus        18 ~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~~~hf~s~H~~   97 (183)
T cd08761          18 TSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERNGKPHFTSWHGI   97 (183)
T ss_pred             cceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCccchhHH
Confidence            46899999999     8999999975532211 12567899999999999999999999999988764345678889999


Q ss_pred             hhHHHHHHHHHHHhheee---ccCCC--CCCcchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 036242          208 IGIALFFLATVQVFALLL---RPKPD--HKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSL  262 (330)
Q Consensus       208 iGi~~~~l~~~Q~l~g~~---rp~~~--~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l  262 (330)
                      +|++++++.++|++.|++   +|...  .++|+.++++|+++|++++++|++|+.+|++.
T Consensus        98 lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~  157 (183)
T cd08761          98 LGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLET  157 (183)
T ss_pred             HHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            999999999999999874   44333  26788999999999999999999999999987

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PLN02351 cytochromes b561 family protein

Probab=99.81  E-value=2e-19  Score=162.28  Aligned_cols=153  Identities=16%  Similarity=0.020  Sum_probs=119.4

Q ss_pred             hhh-hhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchh
Q 036242          135 RKR-NFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNI  208 (330)
Q Consensus       135 ~~~-~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~i  208 (330)
                      ..+ ++|++||     +|.+.||++.|.+|.   .++.|+.+|..+|.++++++++|+...+-..++ ..+++.++|+|+
T Consensus        48 ~iffn~HP~lMviGfi~L~geAILvYR~~~~---~~k~~K~lH~~Lh~~Ali~~vvGl~a~fh~~~~-~i~nlySLHSWl  123 (242)
T PLN02351         48 LVYAVLHPLLMVIGFILISGEAILVHRWLPG---SRKTKKSVHLWLQGLALASGVFGIWTKFHGQDG-IVANFYSLHSWM  123 (242)
T ss_pred             ceeecccHHHHHHHHHHHHHHHHHHhhcccc---cchHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CccchhHHHHHH
Confidence            355 7999999     899999999999874   345699999999999999999999984433221 135677799999


Q ss_pred             hHHHHHHHHHHHhhee---eccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcccc------C------CCcchhhHH
Q 036242          209 GIALFFLATVQVFALL---LRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLL------D------PEIQWWHAY  273 (330)
Q Consensus       209 Gi~~~~l~~~Q~l~g~---~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~------~------~~~~~~~~~  273 (330)
                      |++++++..+|++.|+   +.|......|....++|.++|+++++||++++.+|+...      .      ++.......
T Consensus       124 Gl~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EKl~F~~~~~~y~~~~~Ea~lvN~  203 (242)
T PLN02351        124 GLICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLEKLTFLQTKRNVSKHGSESMVVNG  203 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccCCchhhhHHH
Confidence            9999999999999875   567766667888889999999999999999999999642      1      123344566


Q ss_pred             HHHHHHHHHHHHHHhhee
Q 036242          274 IVTAISSGIISAALEAIT  291 (330)
Q Consensus       274 ~~~v~~~~~~~i~lev~~  291 (330)
                      .++++++.++.|++-+..
T Consensus       204 ~Glliv~fG~~Vv~~~~~  221 (242)
T PLN02351        204 LGLGLALLSGIVILAAVL  221 (242)
T ss_pred             HHHHHHHHHHHHHHhhcC
Confidence            666666666555655543

>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product

Probab=99.80  E-value=2.1e-19  Score=155.83  Aligned_cols=128  Identities=23%  Similarity=0.256  Sum_probs=107.4

Q ss_pred             hhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhh
Q 036242          135 RKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIG  209 (330)
Q Consensus       135 ~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iG  209 (330)
                      +.+++|++||     +|...++++.|..+..+..+..|+.+|..+|.++++++++|+..+|.+++..+.+++.++|+|+|
T Consensus        33 ~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~~nlySlHSWlG  112 (179)
T cd08762          33 KNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHTANLYSLHSWVG  112 (179)
T ss_pred             CceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccchhhHHHHHH
Confidence            4899999999     56666677666544332245668999999999999999999999999988545566777999999


Q ss_pred             HHHHHHHHHHHhhee---eccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 036242          210 IALFFLATVQVFALL---LRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSL  262 (330)
Q Consensus       210 i~~~~l~~~Q~l~g~---~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l  262 (330)
                      ++++++..+|.+.|+   +.|......|....++|+++|++++++|++++.+|+..
T Consensus       113 l~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lGl~e  168 (179)
T cd08762         113 ICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIASCISGINE  168 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999875   46766666788889999999999999999999999864

Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product

Probab=99.79  E-value=3e-19  Score=151.90  Aligned_cols=129  Identities=17%  Similarity=0.211  Sum_probs=110.6

Q ss_pred             chhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchh
Q 036242          134 QRKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNI  208 (330)
Q Consensus       134 ~~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~i  208 (330)
                      ...+++|++||     +++..++++.|-.+..+..++.+..+|+.+|.+++++.++|+..+|..++..+.+++.++|+|+
T Consensus         9 ~~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~~~fySlHSwl   88 (153)
T cd08765           9 AAEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNIPNMYSLHSWV   88 (153)
T ss_pred             CCeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHH
Confidence            46899999999     7777888888854433224677899999999999999999999999987754566888899999


Q ss_pred             hHHHHHHHHHHHhhee---eccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 036242          209 GIALFFLATVQVFALL---LRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSL  262 (330)
Q Consensus       209 Gi~~~~l~~~Q~l~g~---~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l  262 (330)
                      |++++++..+|.+.|+   +.|....+.|+...++|+++|+++++|+++++.+|+..
T Consensus        89 Gl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~e  145 (153)
T cd08765          89 GLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMGITE  145 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999884   57876667788889999999999999999999999864

Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me

>PLN02810 carbon-monoxide oxygenase

Probab=99.79  E-value=8.9e-19  Score=156.88  Aligned_cols=154  Identities=17%  Similarity=0.106  Sum_probs=126.8

Q ss_pred             cchhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccch
Q 036242          133 RQRKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRN  207 (330)
Q Consensus       133 ~~~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~  207 (330)
                      ++..+++|++||     ++...++++.|.++.   .++.+..+|..+|.++++++++|+..+|..++..+.+++.++|+|
T Consensus        43 ~~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~---~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i~nlySLHSW  119 (231)
T PLN02810         43 KNLIFNLHPVLMLIGLIIIGGEAIMSYKSLPL---KKEVKKLIHLVLHAIALILGIFGICAAFKNHNESGIANLYSLHSW  119 (231)
T ss_pred             CCceeeehHHHHHHHHHHHhhHHHHHhhcccc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCceeeHHHH
Confidence            346899999999     777889999887654   356789999999999999999999999999875556777889999


Q ss_pred             hhHHHHHHHHHHHhhee---eccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcccc-----C------CCcchhhHH
Q 036242          208 IGIALFFLATVQVFALL---LRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLL-----D------PEIQWWHAY  273 (330)
Q Consensus       208 iGi~~~~l~~~Q~l~g~---~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~-----~------~~~~~~~~~  273 (330)
                      +|++++++..+|++.|+   +.|......|....++|.++|.+++++|++++.+|+...     .      ++.......
T Consensus       120 lGl~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~EKl~Fl~~~~~~~~~~Ea~lvN~  199 (231)
T PLN02810        120 LGIGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLEKLTFLESGGLDKYGSEALLVNF  199 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCchhhhHHH
Confidence            99999999999999886   688877778888889999999999999999999999642     1      123344566


Q ss_pred             HHHHHHHHHHHHHHhh
Q 036242          274 IVTAISSGIISAALEA  289 (330)
Q Consensus       274 ~~~v~~~~~~~i~lev  289 (330)
                      .++++++.++.+++.+
T Consensus       200 ~Glliv~fg~~V~~~~  215 (231)
T PLN02810        200 TAIITILYGAFVVLTA  215 (231)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            6776666666666655

>PLN02680 carbon-monoxide oxygenase

Probab=99.78  E-value=1.2e-18  Score=157.17  Aligned_cols=157  Identities=17%  Similarity=0.093  Sum_probs=123.5

Q ss_pred             ccchhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccc
Q 036242          132 SRQRKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHR  206 (330)
Q Consensus       132 ~~~~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~  206 (330)
                      ++..++++|++||     ++...++++.|..|.   .++.+..+|..+|.++++++++|++.+|..++..+.+++.++|+
T Consensus        42 ~~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~---~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~~nfySlHS  118 (232)
T PLN02680         42 NKDLIFNVHPVLMVIGLVLLNGEAMLAYKTVPG---TKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGIDNFYSLHS  118 (232)
T ss_pred             CCcceEechHHHHHHHHHHHHHHHHhccccccc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccccHHH
Confidence            3456899999999     666678888765443   46678899999999999999999999999887545567888999


Q ss_pred             hhhHHHHHHHHHHHhhee---eccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcccc------C------CCcchhh
Q 036242          207 NIGIALFFLATVQVFALL---LRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLL------D------PEIQWWH  271 (330)
Q Consensus       207 ~iGi~~~~l~~~Q~l~g~---~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~------~------~~~~~~~  271 (330)
                      |+|++++++..+|++.|+   +.|....+.|+...++|+++|+++++|+++++.+|+...      .      ++.....
T Consensus       119 WlGl~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~Ek~~f~~~~~~~~~~~~e~~lv  198 (232)
T PLN02680        119 WLGLACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGILEKATFLQSNKVISRYSTEAMLV  198 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCchhhhH
Confidence            999999999999999874   678766566776778999999999999999999999642      1      1223344


Q ss_pred             HHHHHHHHHHHHHHHHhhee
Q 036242          272 AYIVTAISSGIISAALEAIT  291 (330)
Q Consensus       272 ~~~~~v~~~~~~~i~lev~~  291 (330)
                      ...++++++.++.+++.+..
T Consensus       199 N~~gl~~~~fg~~V~~~v~~  218 (232)
T PLN02680        199 NSLGILIVVLGGFVILAIVT  218 (232)
T ss_pred             hHHHHHHHHHHHHHHHhhcc
Confidence            56666666666666665543

>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product

Probab=99.77  E-value=1.7e-18  Score=146.28  Aligned_cols=126  Identities=21%  Similarity=0.199  Sum_probs=110.2

Q ss_pred             hhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhh
Q 036242          135 RKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIG  209 (330)
Q Consensus       135 ~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iG  209 (330)
                      .++++|+++|     +++..++++.|..+..  .++.+..+|+.+|.+++++.++|+.+++..++..+.+++.+.|+|+|
T Consensus         5 ~~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~--~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~~~hf~SlHswlG   82 (143)
T cd08763           5 LQFNVHPLCMVLGLVFLCGEALLVYRVFRNE--TKRSTKILHGLLHIMALVISLVGLVAVFDYHQANGYPDMYSLHSWCG   82 (143)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCccccHHHHHH
Confidence            4899999999     6778888988876543  45668889999999999999999999999877545568888999999


Q ss_pred             HHHHHHHHHHHhhee---eccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 036242          210 IALFFLATVQVFALL---LRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSL  262 (330)
Q Consensus       210 i~~~~l~~~Q~l~g~---~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l  262 (330)
                      ++++++..+|.+.|+   +.|....+.|..+.++|+++|+++++++++++.+|+..
T Consensus        83 l~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG~~e  138 (143)
T cd08763          83 ILTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLGLTE  138 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999884   57877677889999999999999999999999999864

Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>KOG1619 consensus Cytochrome b [Energy production and conversion]

Probab=99.75  E-value=3.6e-18  Score=152.66  Aligned_cols=127  Identities=20%  Similarity=0.287  Sum_probs=111.8

Q ss_pred             chhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchh
Q 036242          134 QRKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNI  208 (330)
Q Consensus       134 ~~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~i  208 (330)
                      ++.+++|++||     .+.-.++++.|.+|..  .++.-.-+|..+|+.+++++++|+..+|..++...-.++.+.|+|+
T Consensus        52 ~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~--~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWl  129 (245)
T KOG1619|consen   52 NKEFNLHPVLMVIGFIYLQGEAILIYRVFRYT--SKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWL  129 (245)
T ss_pred             chhcCcchHHHHHHHHHhccceeeeeehhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHH
Confidence            67899999999     5556688999987775  3566778999999999999999999999998754456777899999


Q ss_pred             hHHHHHHHHHHHhhee---eccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 036242          209 GIALFFLATVQVFALL---LRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSL  262 (330)
Q Consensus       209 Gi~~~~l~~~Q~l~g~---~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l  262 (330)
                      |+.++.+..+|++.||   +.|.-..+.|...-++|+.+|..++++|++|+.+|+..
T Consensus       130 Gl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~e  186 (245)
T KOG1619|consen  130 GLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGLLE  186 (245)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999885   67887889999999999999999999999999999953

>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins

Probab=99.68  E-value=7.3e-16  Score=131.01  Aligned_cols=95  Identities=27%  Similarity=0.436  Sum_probs=80.7

Q ss_pred             eeeEEEeCCCCEEEEEEEEcCCCCcEEEEEEcCCCCCCCCCCeEEEEEcCCCcEEEEEeecCCCCCCCCCCCcceeeeee
Q 036242            2 FLHWTYDPSTNVVDLAFRRSTPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYTSPIGSGTPTLQEGSLSFRVTNI   81 (330)
Q Consensus         2 ~l~W~~~~~~~~i~~~~~~~~~~~gWVavGfs~~g~~M~gsd~vI~~~~~~G~v~v~~~~~~g~~~p~~~~~~~~~l~~~   81 (330)
                      .|+|+++.+ +++.|.++++..+.||+|||||++++ |.++|++||+.+++|.+.+++||++|++.|.++.  ..++...
T Consensus         5 ~l~W~~~~~-~~v~~~l~~~~~~~gwvaiGfs~~~~-M~~~d~vv~~~~~~g~~~v~d~~~~~~~~~~~d~--~~~~~~~   80 (148)
T smart00664        5 FLSWSVDGE-NSIAFELSGPTSTNGWVAIGFSPDGQ-MAGADVVVAWVDNNGRVTVKDYYTPGYGPPVEDD--QQDVTDL   80 (148)
T ss_pred             EEEEEECCC-CeEEEEEEEecCCCCEEEEEECCCCC-cCCCCEEEEEEcCCCCEEEEEEEcCCCCCCCcCc--ccccccc
Confidence            689999976 88888888764338999999999977 9999999999987799999999999998776543  3456655


Q ss_pred             -eEEEECCEEEEEEEEecCC
Q 036242           82 -TATLVGNEWTIFARLHLYS  100 (330)
Q Consensus        82 -s~~~~~g~~~~~~~~~l~~  100 (330)
                       ++.++||.++|.++|++++
T Consensus        81 ~~~~~~~g~~~~~f~R~l~t  100 (148)
T smart00664       81 LSATYENGVLTCRFRRKLGS  100 (148)
T ss_pred             eeEEEECCEEEEEEEEEccC
Confidence             8889999999999988876

A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press).

>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals

Probab=99.63  E-value=7.4e-15  Score=120.81  Aligned_cols=97  Identities=19%  Similarity=0.291  Sum_probs=80.8

Q ss_pred             eeeEEEeCCCCEEEEEEEEcCCCCcEEEEEEcCCCCCCCCCCeEEEEEcCCCcEEEEEee-cCCCCCCCCCCCcceeeee
Q 036242            2 FLHWTYDPSTNVVDLAFRRSTPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYTSP-IGSGTPTLQEGSLSFRVTN   80 (330)
Q Consensus         2 ~l~W~~~~~~~~i~~~~~~~~~~~gWVavGfs~~g~~M~gsd~vI~~~~~~G~v~v~~~~-~~g~~~p~~~~~~~~~l~~   80 (330)
                      .|+|+++.++++++|.+++...+.+|+|+|||++++ |.++|+++|+.+ +|.+.++++| .++++.|..+..-+.++..
T Consensus         6 ~l~w~~~~~~~~i~~~l~~~~~~~~w~aiGfs~~~~-M~~~Dvv~~~~~-~~~~~v~d~~~~~~~~~p~~d~~~~~~~~~   83 (124)
T PF03351_consen    6 SLSWTVDGDNNTIEFELTGPANTNGWVAIGFSDDGG-MGGSDVVVCWVD-DGKVYVQDYYSTGGYGPPTVDDQGSQDIQL   83 (124)
T ss_pred             EEEEEEECCCCEEEEEEEeccCCCCEEEEEEccccC-CCCCcEEEEEEc-CCceeEEEeeccCcccceeeccccCCcEEE
Confidence            589999987888888888654338999999999999 999999999998 6999999999 8888877665321245777


Q ss_pred             eeEEEECCEEEEEEEEecCC
Q 036242           81 ITATLVGNEWTIFARLHLYS  100 (330)
Q Consensus        81 ~s~~~~~g~~~~~~~~~l~~  100 (330)
                      .++.+++|.++|.++|++.+
T Consensus        84 ~~~~~~~g~~~~~F~R~l~t  103 (124)
T PF03351_consen   84 LSGSYSNGTTTCSFTRPLNT  103 (124)
T ss_pred             EEEEEECCEEEEEEEEEccC
Confidence            78889999999988888876

It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].

>PF04526 DUF568: Protein of unknown function (DUF568); InterPro: IPR017214 This group represents an uncharacterised conserved protein

Probab=99.31  E-value=1.3e-11  Score=98.11  Aligned_cols=80  Identities=46%  Similarity=0.738  Sum_probs=73.9

Q ss_pred             CCCCCeEEEEEcCC-CcEEEEEeecCCCCCCCCCCCcceeeeeeeEEEECCEEEEEEEEecCC-----------------
Q 036242           39 MAGSKCHVAFRNST-GAIRAYTSPIGSGTPTLQEGSLSFRVTNITATLVGNEWTIFARLHLYS-----------------  100 (330)
Q Consensus        39 M~gsd~vI~~~~~~-G~v~v~~~~~~g~~~p~~~~~~~~~l~~~s~~~~~g~~~~~~~~~l~~-----------------  100 (330)
                      |.|++++|++++++ |.+.+++|.+++|.+.+.++++++++.+.++++++|+++||++++|+.                 
T Consensus         1 M~GtqALvAf~~~~~G~~~v~T~~i~sy~~~l~~~~lsf~v~~lsae~~~~~~~IfAtl~Lp~n~t~vnhVWQ~G~~v~g   80 (101)
T PF04526_consen    1 MVGTQALVAFKNSNGGSVTVYTYNITSYSPSLQPGPLSFDVSDLSAEYSGGEMTIFATLKLPGNSTSVNHVWQVGPSVQG   80 (101)
T ss_pred             CCCceEEEEEeCCCCceEEEEEEeecccccccccccccccccceEeEEeCCEEEEEEEEEcCCCCcEEEEEeCcCCccCC
Confidence            99999999999988 899999999999987788888999999999999999999999999986                 


Q ss_pred             ---CCCCCCCCCCcceeEEEe
Q 036242          101 ---DLHPITGDNARSVGTIDF  118 (330)
Q Consensus       101 ---~~h~~~~~~~~s~~~~dl  118 (330)
                         .+|+++++|+.|.+++||
T Consensus        81 g~p~~H~~~~~Nl~S~gtldl  101 (101)
T PF04526_consen   81 GSPQPHPTSGANLQSKGTLDL  101 (101)
T ss_pred             CccccCCCCCccccceEEecC
Confidence               458888899999999996

>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi

Probab=98.84  E-value=9.3e-09  Score=82.66  Aligned_cols=83  Identities=24%  Similarity=0.394  Sum_probs=70.0

Q ss_pred             ccchhhhhhhhhH-----hhhhhhHHHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCc--ccc
Q 036242          132 SRQRKRNFHQFLS-----ILMPMGAMMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNR--DYI  204 (330)
Q Consensus       132 ~~~~~~~~Hg~lM-----il~p~gi~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~--~~~  204 (330)
                      ..+....+|+++|     +++|+|++..+. |      ..|   |..+|++.+++.++|+.++....+  ..+++  .+.
T Consensus        13 ~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~-~------sr~---~~~~q~~~~~l~~~g~~~g~~~~~--~~p~lyp~n~   80 (105)
T PF10348_consen   13 PHRSALYAHIVLMTLAWVILYPIGLVLGNA-R------SRW---HLPVQTVFLVLMILGLFLGSVYNG--STPDLYPNNA   80 (105)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHc-c------chH---HHHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCCH
Confidence            3467899999999     999999997664 2      235   999999999999999999998776  44445  449


Q ss_pred             cchhhHHHHHHHHHHHhheeec
Q 036242          205 HRNIGIALFFLATVQVFALLLR  226 (330)
Q Consensus       205 H~~iGi~~~~l~~~Q~l~g~~r  226 (330)
                      |.++|.++++++++|++.|+++
T Consensus        81 H~k~g~il~~l~~~q~~~gv~~  102 (105)
T PF10348_consen   81 HGKMGWILFVLMIVQVILGVIL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998765

Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.

>cd00241 CDH_cytochrome Cellobiose dehydrogenase (CellobioseDH), cytochrome domain; This extracellular fungal oxidoreductase degrades both lignin and cellulose

Probab=98.31  E-value=3.7e-06  Score=74.11  Aligned_cols=75  Identities=21%  Similarity=0.275  Sum_probs=58.6

Q ss_pred             EEEEEEEEcCCC-CcEEEEEEcCCCCCCCCCCeEEEEEcCCCcEEEEEeecCCCCCC-CCCCCcceeeeeeeEEEECCEE
Q 036242           13 VVDLAFRRSTPS-SQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYTSPIGSGTPT-LQEGSLSFRVTNITATLVGNEW   90 (330)
Q Consensus        13 ~i~~~~~~~~~~-~gWVavGfs~~g~~M~gsd~vI~~~~~~G~v~v~~~~~~g~~~p-~~~~~~~~~l~~~s~~~~~g~~   90 (330)
                      .-+|.+++..|. .||+|+|+   |.+|.++.++|+|.|++ +++++.|+.+||.+| ..+++..+.++.. ..++++.+
T Consensus        39 ~~d~i~qi~aP~~~gW~gls~---Gg~M~~~~L~vaw~~g~-~Vt~S~R~atg~~~P~~y~g~a~~t~L~g-s~vn~t~~  113 (184)
T cd00241          39 STEFIGELVAPRASGWIGLAL---GGAMTNSLLLVAWPNGN-QIVSSTRYATGYTLPDAYTGPATITQLPS-SSVNSTHW  113 (184)
T ss_pred             CCCEEEEEeCcCCCCeEEEee---cccCCCCeEEEEEcCCC-eEEEeEEEecCccCCCccCCCceEEECCC-CcEeCCEE
Confidence            347778888887 99999999   56699999999999764 599999999999887 4444445556644 34678888


Q ss_pred             EE
Q 036242           91 TI   92 (330)
Q Consensus        91 ~~   92 (330)
                      +.
T Consensus       114 t~  115 (184)
T cd00241         114 KL  115 (184)
T ss_pred             EE
Confidence            75

It is a hemoflavoenzyme that is comprised of a b-type cytochrome domain linked to a large flavodehydrogenase domain. The 2 domains can be separated proteolytically. The cytochrome domain folds as a beta sandwich and complexes a heme molecule.

>KOG3568 consensus Dopamine beta-monooxygenase [Amino acid transport and metabolism]

Probab=98.14  E-value=3.4e-06  Score=82.46  Aligned_cols=93  Identities=13%  Similarity=0.181  Sum_probs=65.4

Q ss_pred             eeeEEEeCCCCEEEEEEEEcCCCCcEEEEEEcCCCCCCCCCCeEEEEEcCCCcEEEEEeecCCCCCCCCCCCcceeeeee
Q 036242            2 FLHWTYDPSTNVVDLAFRRSTPSSQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYTSPIGSGTPTLQEGSLSFRVTNI   81 (330)
Q Consensus         2 ~l~W~~~~~~~~i~~~~~~~~~~~gWVavGfs~~g~~M~gsd~vI~~~~~~G~v~v~~~~~~g~~~p~~~~~~~~~l~~~   81 (330)
                      .|.|.++.+.+.+.|.++..  +.+||++|||+.|. |.+||+++++.+ .+...+.|+|.+....--.|.++++.++  
T Consensus        46 ~lsW~vdy~~q~i~F~l~~~--t~~~v~fGfSdrG~-lanaDivv~~n~-g~~~~~~DayTn~d~qi~~D~QQDyqll--  119 (603)
T KOG3568|consen   46 WLSWSVDYRGQQIAFRLQVR--TAGYVGFGFSDRGA-LANADIVVGGNA-GGRPYLQDAYTNADGQIKKDAQQDYQLL--  119 (603)
T ss_pred             EEEEeeccccceeEEEEEec--cCCEEEEecCCcCC-cccCcEEEEecc-CCchhhhhhhcCCCCceecchhhhhHHH--
Confidence            58999988888777776664  69999999999999 999999999975 4668899999765543222223333333  


Q ss_pred             eEEEECCEEEEEEEEecCC
Q 036242           82 TATLVGNEWTIFARLHLYS  100 (330)
Q Consensus        82 s~~~~~g~~~~~~~~~l~~  100 (330)
                      ....+...+++-+||++.+
T Consensus       120 ~~~e~~~~~~i~frRkl~T  138 (603)
T KOG3568|consen  120 YAMENSTHTIIEFRRKLHT  138 (603)
T ss_pred             hhhccCCccEEEEecccCc
Confidence            3333334445667777765

>PF13301 DUF4079: Protein of unknown function (DUF4079)

Probab=96.94  E-value=0.0067  Score=53.19  Aligned_cols=60  Identities=13%  Similarity=0.092  Sum_probs=46.1

Q ss_pred             CcccccchhhHHHHHHHHHHHhhe-eeccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcccc
Q 036242          200 NRDYIHRNIGIALFFLATVQVFAL-LLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLL  263 (330)
Q Consensus       200 ~~~~~H~~iGi~~~~l~~~Q~l~g-~~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~  263 (330)
                      -+.++|-+.|+++..|+.++.... .+.+++    ++.++..|..++.+++++-.++..+|....
T Consensus       112 lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~----~~~~R~lHi~lN~~~l~Lf~~q~itG~~il  172 (175)
T PF13301_consen  112 LFWSPHLWAGLAVVGLMAFSAALVPQIQKGN----RPWARRLHIYLNSLALLLFAWQAITGWRIL  172 (175)
T ss_pred             CccCchHHHHHHHHHHHHHHHHHHHHHccCC----chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355689999999999998887553 333322    456777899999999999999999998653

>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product

Probab=96.79  E-value=0.0096  Score=52.68  Aligned_cols=96  Identities=15%  Similarity=0.043  Sum_probs=69.9

Q ss_pred             CchhhhhhHhhHHHHHHHH-HHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHH
Q 036242          164 NPAWFYLHVACQVSAYIIG-VAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHW  242 (330)
Q Consensus       164 ~~~Wf~~H~~~q~~~~~l~-i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~  242 (330)
                      ....+..|..+|.+++.+. -+|+.++-....  ..+.+...|..+=++.+++.++=...++...   .+.+..++-.|.
T Consensus        32 ~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~--~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~---~~~~~~~~~~H~  106 (191)
T cd08760          32 SDTLIKAHGVLMAIAWGILMPIGALLARYFLL--GDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV---QGGGGSLNNAHA  106 (191)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCCCCCcCcch
Confidence            4568899999999997775 456555433211  2233455999988888888877777776653   233455667899


Q ss_pred             HHHHHHHHHHHHHHHHhccccC
Q 036242          243 AVGYAIIVTSVFNVLKGLSLLD  264 (330)
Q Consensus       243 ~~G~~~~ilai~ni~~Gl~l~~  264 (330)
                      ++|.++++|.++|...|+-...
T Consensus       107 ~lGl~~~~l~~lQ~~~G~~~~~  128 (191)
T cd08760         107 ILGIIVLALAILQPLLGLLRPH  128 (191)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999996543

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=96.70  E-value=0.0043  Score=51.46  Aligned_cols=94  Identities=16%  Similarity=0.164  Sum_probs=65.8

Q ss_pred             hhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHHHH
Q 036242          168 FYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYA  247 (330)
Q Consensus       168 f~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G~~  247 (330)
                      |..|..+|++++++...-.++..........+.....|..+.++.+++.++=....+....  .+.+.-+.-.|-++|.+
T Consensus         2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~--~~~~~h~~s~Hs~lGl~   79 (131)
T cd08554           2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHN--AGGIANLYSLHSWLGLA   79 (131)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCcccchhHHHHHHHH
Confidence            4679999999987655444444443221011122338999999988888887777766554  22334556679999999


Q ss_pred             HHHHHHHHHHHhcccc
Q 036242          248 IIVTSVFNVLKGLSLL  263 (330)
Q Consensus       248 ~~ilai~ni~~Gl~l~  263 (330)
                      +++|...+...|+...
T Consensus        80 ~~~l~~~q~~~G~~~~   95 (131)
T cd08554          80 TVLLFLLQFLSGFVLF   95 (131)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998654

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain

Probab=96.60  E-value=0.011  Score=48.84  Aligned_cols=94  Identities=16%  Similarity=0.125  Sum_probs=64.2

Q ss_pred             hhHhhHHHHHHHH-HHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHHHHH
Q 036242          170 LHVACQVSAYIIG-VAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAI  248 (330)
Q Consensus       170 ~H~~~q~~~~~l~-i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G~~~  248 (330)
                      +|..+|.+++++. ..|..+.=........+.+...|..+.++.+++.++=...++......  .++.++-.|.++|.++
T Consensus         1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~--~~~~~~s~H~~lGl~~   78 (129)
T smart00665        1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNES--GIANFYSLHSWLGLAA   78 (129)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCCccchhHHHHHHH
Confidence            4999999998654 445444332111101223334899999988888887777776554322  2345667799999999


Q ss_pred             HHHHHHHHHHhccccCC
Q 036242          249 IVTSVFNVLKGLSLLDP  265 (330)
Q Consensus       249 ~ilai~ni~~Gl~l~~~  265 (330)
                      ++|...|...|+-....
T Consensus        79 ~~l~~~Q~~~G~~~~~~   95 (129)
T smart00665       79 FVLAGLQWLSGFLRPLP   95 (129)
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999976543

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=96.28  E-value=0.02  Score=47.60  Aligned_cols=92  Identities=13%  Similarity=0.140  Sum_probs=62.4

Q ss_pred             hhHhhHHHHHHHHHHHHHHHhhhc--CCccCCCcccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHHHH
Q 036242          170 LHVACQVSAYIIGVAGWATGIDLS--SGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYA  247 (330)
Q Consensus       170 ~H~~~q~~~~~l~i~g~~~~~~~~--~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G~~  247 (330)
                      +|..+|.+++.+...-.++.....  .....+.+...|..+-++.+++.++=....+.....  +..+.++-.|.++|.+
T Consensus         1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~--~~~~h~~s~H~~lG~~   78 (137)
T PF03188_consen    1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNR--NGKPHFKSWHSILGLA   78 (137)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCCCCCCCchhhhhHH
Confidence            499999999887654333444431  110112233499999988888877777666543222  2234556679999999


Q ss_pred             HHHHHHHHHHHhcccc
Q 036242          248 IIVTSVFNVLKGLSLL  263 (330)
Q Consensus       248 ~~ilai~ni~~Gl~l~  263 (330)
                      ++++.+.|...|+-..
T Consensus        79 ~~~l~~~Q~~~G~~~~   94 (137)
T PF03188_consen   79 TFVLALLQPLLGFFRF   94 (137)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999754

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product

Probab=96.20  E-value=0.015  Score=51.28  Aligned_cols=97  Identities=12%  Similarity=0.210  Sum_probs=68.2

Q ss_pred             CchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCc---cCCCcccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHH
Q 036242          164 NPAWFYLHVACQVSAYIIGVAGWATGIDLSSGI---SSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIY  240 (330)
Q Consensus       164 ~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~---~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~  240 (330)
                      ....|..|..+|.+++++.....++.+......   +.+.....|.++-++.+++.++=....+.-.  +.+.++-++-.
T Consensus        17 ~~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~--~~~~~~hf~s~   94 (183)
T cd08761          17 GTSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNK--ERNGKPHFTSW   94 (183)
T ss_pred             ccceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCCCCccch
Confidence            456899999999999887766655555422110   1112223999999988888877665554332  22334566677


Q ss_pred             HHHHHHHHHHHHHHHHHHhccc
Q 036242          241 HWAVGYAIIVTSVFNVLKGLSL  262 (330)
Q Consensus       241 H~~~G~~~~ilai~ni~~Gl~l  262 (330)
                      |.|+|.+++++.+.|...|+..
T Consensus        95 H~~lGl~~~~l~~~Q~~~G~~~  116 (183)
T cd08761          95 HGILGLVTVILIVLQALGGLAL  116 (183)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHH
Confidence            9999999999999999999954

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product

Probab=96.00  E-value=0.051  Score=46.13  Aligned_cols=95  Identities=15%  Similarity=0.112  Sum_probs=69.6

Q ss_pred             hhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCccc-ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHH
Q 036242          166 AWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDY-IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAV  244 (330)
Q Consensus       166 ~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~-~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~  244 (330)
                      .-|.+|..+|++++++...-.++.+..... .++...+ .|.+++++.+++.++-...-+..+...  ..+-+.-.|-|+
T Consensus         5 ~~Fn~HP~lm~~G~i~l~geaiL~~~~~~~-~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~--~~~hf~SlHswl   81 (143)
T cd08763           5 LQFNVHPLCMVLGLVFLCGEALLVYRVFRN-ETKRSTKILHGLLHIMALVISLVGLVAVFDYHQAN--GYPDMYSLHSWC   81 (143)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhccccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCccccHHHHH
Confidence            368899999999999877766666654321 1222223 999999999998888776665444332  234556679999


Q ss_pred             HHHHHHHHHHHHHHhcccc
Q 036242          245 GYAIIVTSVFNVLKGLSLL  263 (330)
Q Consensus       245 G~~~~ilai~ni~~Gl~l~  263 (330)
                      |.++++|-..+...|+..+
T Consensus        82 Gl~t~~L~~lQ~~~G~~~f  100 (143)
T cd08763          82 GILTFVLYFLQWLIGFSFF  100 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998653

Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561)

Probab=95.88  E-value=0.046  Score=49.43  Aligned_cols=98  Identities=13%  Similarity=0.045  Sum_probs=68.1

Q ss_pred             CchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCccc-ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHH
Q 036242          164 NPAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDY-IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHW  242 (330)
Q Consensus       164 ~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~-~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~  242 (330)
                      +...|.+|..+|++++++...=-++.+..... ..+...+ .|..+..+.+++.++-....+-.+....+..+-+.-.|-
T Consensus        20 ~~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~-~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHS   98 (214)
T cd08764          20 PGLQFNWHPLLMVLGLIFLYGNSILVYRVFRN-TRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHS   98 (214)
T ss_pred             CCceEeecHHHHHHHHHHHHHHHHHHhccCcc-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHH
Confidence            34579999999999997766555555554331 1111223 999999999998888755544444333223344455699


Q ss_pred             HHHHHHHHHHHHHHHHhccc
Q 036242          243 AVGYAIIVTSVFNVLKGLSL  262 (330)
Q Consensus       243 ~~G~~~~ilai~ni~~Gl~l  262 (330)
                      |+|.++++|-..+...|+..
T Consensus        99 wlGl~t~~L~~lQ~~~Gf~~  118 (214)
T cd08764          99 WLGLTAVILFSLQWVGGFVS  118 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999843

Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1

Probab=95.48  E-value=0.11  Score=44.22  Aligned_cols=93  Identities=15%  Similarity=0.077  Sum_probs=64.9

Q ss_pred             chhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCccc-ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHH
Q 036242          165 PAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDY-IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWA  243 (330)
Q Consensus       165 ~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~-~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~  243 (330)
                      ...|.+|..+|++++++...=-++.+....  .++.... .|.++=++.+++.++-....+..+...  ..+-+.-.|-|
T Consensus         5 ~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~--~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~--~~~~~~SlHSw   80 (144)
T cd08766           5 GLIFNVHPVLMVIGFIFLAGEAILAYKTVP--GSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEV--GIPNLYSLHSW   80 (144)
T ss_pred             cceeeccHHHHHHHHHHHHHHHHHHhhccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CccccccHHHH
Confidence            458999999999998776655566666432  2222223 898888888877777665544433322  22334456999


Q ss_pred             HHHHHHHHHHHHHHHhcc
Q 036242          244 VGYAIIVTSVFNVLKGLS  261 (330)
Q Consensus       244 ~G~~~~ilai~ni~~Gl~  261 (330)
                      +|.++++|-..+...|+.
T Consensus        81 lGl~t~~L~~lQ~~~G~~   98 (144)
T cd08766          81 LGIGTISLFGLQWLFGFV   98 (144)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999975

Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PLN02680 carbon-monoxide oxygenase

Probab=94.26  E-value=0.25  Score=45.23  Aligned_cols=93  Identities=16%  Similarity=0.106  Sum_probs=63.6

Q ss_pred             hhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCccc-ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHH
Q 036242          166 AWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDY-IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAV  244 (330)
Q Consensus       166 ~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~-~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~  244 (330)
                      .-|.+|..+|++++++...-.++.+....  .++...+ .|..+=.+.+++.++-....+-.+..  +.++-+.-.|-|+
T Consensus        45 ~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~--~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~~nfySlHSWl  120 (232)
T PLN02680         45 LIFNVHPVLMVIGLVLLNGEAMLAYKTVP--GTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNE--KGIDNFYSLHSWL  120 (232)
T ss_pred             ceEechHHHHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCccccccHHHHH
Confidence            36889999999999996655555554332  2222223 78888777777776665553333322  2234444569999


Q ss_pred             HHHHHHHHHHHHHHhccc
Q 036242          245 GYAIIVTSVFNVLKGLSL  262 (330)
Q Consensus       245 G~~~~ilai~ni~~Gl~l  262 (330)
                      |.++++|-..|...|+..
T Consensus       121 Gl~t~iL~~lQ~~~Gf~~  138 (232)
T PLN02680        121 GLACLFLFSLQWAAGFVT  138 (232)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999865

>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi

Probab=94.26  E-value=0.27  Score=39.50  Aligned_cols=88  Identities=20%  Similarity=0.265  Sum_probs=57.2

Q ss_pred             CCchhhhhhHhhHHHHHHH-HHHHHHHHhhhcCCccCCCcccccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHH
Q 036242          163 GNPAWFYLHVACQVSAYII-GVAGWATGIDLSSGISSLNRDYIHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYH  241 (330)
Q Consensus       163 ~~~~Wf~~H~~~q~~~~~l-~i~g~~~~~~~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H  241 (330)
                      +.+...+.|..+|++++++ .-+|+++.....         .+|--.=++-+++.++-.+.|....+.. + ..+.+-.|
T Consensus        13 ~~~~~l~~Hi~lm~la~~il~Pi~lvL~~~~s---------r~~~~~q~~~~~l~~~g~~~g~~~~~~~-p-~lyp~n~H   81 (105)
T PF10348_consen   13 PHRSALYAHIVLMTLAWVILYPIGLVLGNARS---------RWHLPVQTVFLVLMILGLFLGSVYNGST-P-DLYPNNAH   81 (105)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHccc---------hHHHHHHHHHHHHHHHHHHHHHHHhcCC-C-CCCCCCHH
Confidence            4567899999999998655 478887766622         1344333333333344444443322211 1 14567789


Q ss_pred             HHHHHHHHHHHHHHHHHhcc
Q 036242          242 WAVGYAIIVTSVFNVLKGLS  261 (330)
Q Consensus       242 ~~~G~~~~ilai~ni~~Gl~  261 (330)
                      .-+|.+++++.+++...|+.
T Consensus        82 ~k~g~il~~l~~~q~~~gv~  101 (105)
T PF10348_consen   82 GKMGWILFVLMIVQVILGVI  101 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999874

Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.

>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product

Probab=94.10  E-value=0.51  Score=41.48  Aligned_cols=96  Identities=14%  Similarity=0.090  Sum_probs=66.2

Q ss_pred             CchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCc-cCCCccc-ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhH--
Q 036242          164 NPAWFYLHVACQVSAYIIGVAGWATGIDLSSGI-SSLNRDY-IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNI--  239 (330)
Q Consensus       164 ~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~-~~~~~~~-~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~--  239 (330)
                      ++..|.+|..+|++++++.-.=.++.+...... .++...+ .|..+=.+.+++.++-....+-.+...    .+.|.  
T Consensus        31 ~~~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~----~~~nlyS  106 (179)
T cd08762          31 SSKNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH----HTANLYS  106 (179)
T ss_pred             CCCceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----Cccchhh
Confidence            455899999999999988755455555532200 0111123 898888888888877766665544332    23333  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcccc
Q 036242          240 YHWAVGYAIIVTSVFNVLKGLSLL  263 (330)
Q Consensus       240 ~H~~~G~~~~ilai~ni~~Gl~l~  263 (330)
                      +|-|+|.++++|-..|...|+...
T Consensus       107 lHSWlGl~t~~Lf~lQ~~~Gf~~f  130 (179)
T cd08762         107 LHSWVGICTVALFTCQWVMGFTSF  130 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            499999999999999999999654

Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PLN02351 cytochromes b561 family protein

Probab=93.09  E-value=0.99  Score=41.52  Aligned_cols=119  Identities=10%  Similarity=0.008  Sum_probs=72.3

Q ss_pred             hhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCccc-ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHH
Q 036242          167 WFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDY-IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVG  245 (330)
Q Consensus       167 Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~-~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G  245 (330)
                      .|.+|..+|++++++...=-++.+....  .++...+ .|..+=.+.+++.++-...  -.+. .++..+-+--.|-|+|
T Consensus        50 ffn~HP~lMviGfi~L~geAILvYR~~~--~~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~-~~~~i~nlySLHSWlG  124 (242)
T PLN02351         50 YAVLHPLLMVIGFILISGEAILVHRWLP--GSRKTKKSVHLWLQGLALASGVFGIWT--KFHG-QDGIVANFYSLHSWMG  124 (242)
T ss_pred             eecccHHHHHHHHHHHHHHHHHHhhccc--ccchHHHHHHHHHHHHHHHHHHHHHHH--HHhc-ccCCccchhHHHHHHH
Confidence            4579999999999887766666666543  2222333 8877766666666555444  1111 1111232444599999


Q ss_pred             HHHHHHHHHHHHHhccccCCC----------cchhhHHHHHHHHHHHHHHHHhhe
Q 036242          246 YAIIVTSVFNVLKGLSLLDPE----------IQWWHAYIVTAISSGIISAALEAI  290 (330)
Q Consensus       246 ~~~~ilai~ni~~Gl~l~~~~----------~~~~~~~~~~v~~~~~~~i~lev~  290 (330)
                      .++++|-..|-..|+...-.+          ..|-..++..+-+++++.+.+-+.
T Consensus       125 l~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~  179 (242)
T PLN02351        125 LICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLL  179 (242)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998643211          113333444444555555555554

>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes

Probab=92.61  E-value=0.14  Score=44.22  Aligned_cols=94  Identities=14%  Similarity=0.110  Sum_probs=60.0

Q ss_pred             hhhHhhHHHHHHHHHHHHHHHhh----hcCCccCCCcccccchhhHHHHHHHHHHHhheeec------------------
Q 036242          169 YLHVACQVSAYIIGVAGWATGID----LSSGISSLNRDYIHRNIGIALFFLATVQVFALLLR------------------  226 (330)
Q Consensus       169 ~~H~~~q~~~~~l~i~g~~~~~~----~~~~~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~r------------------  226 (330)
                      ..|+..-++-+++.+.|+.+.+.    .............|..+|++.+++.++..+..+.+                  
T Consensus        10 ~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (188)
T PF00033_consen   10 LLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYR   89 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhh
Confidence            45776666666666677766532    11100001112399999999999999999988777                  


Q ss_pred             cC--CCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 036242          227 PK--PDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSL  262 (330)
Q Consensus       227 p~--~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l  262 (330)
                      +.  +..+....+|...++.-.+++++.++.+.+|+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~  127 (188)
T PF00033_consen   90 LFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM  127 (188)
T ss_dssp             TT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11  1123345567788888888888888889999888

The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.

>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product

Probab=91.84  E-value=1.6  Score=37.50  Aligned_cols=98  Identities=21%  Similarity=0.148  Sum_probs=63.5

Q ss_pred             CchhhhhhHhhHHHHHHHHHHHHHHHhhhcCCc-cCCCccc-ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHH
Q 036242          164 NPAWFYLHVACQVSAYIIGVAGWATGIDLSSGI-SSLNRDY-IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYH  241 (330)
Q Consensus       164 ~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~-~~~~~~~-~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H  241 (330)
                      ++.-|.+|..+|++++++.-.=.++.+...... .++.... .|.++=.+.+++.++-...-+..+...  ..+-+.-.|
T Consensus         8 ~~~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~~~fySlH   85 (153)
T cd08765           8 GAAEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NIPNMYSLH   85 (153)
T ss_pred             CCCeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCccccHH
Confidence            455788999999999888544445555421100 1112222 788777777766666555444433322  234455679


Q ss_pred             HHHHHHHHHHHHHHHHHhcccc
Q 036242          242 WAVGYAIIVTSVFNVLKGLSLL  263 (330)
Q Consensus       242 ~~~G~~~~ilai~ni~~Gl~l~  263 (330)
                      -|+|.++++|-..|...|+..+
T Consensus        86 SwlGl~t~~l~~lQ~~~Gf~~f  107 (153)
T cd08765          86 SWVGLAAVILYPLQLVLGISVY  107 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998655

Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me

>PLN02810 carbon-monoxide oxygenase

Probab=91.52  E-value=1.5  Score=39.98  Aligned_cols=93  Identities=15%  Similarity=0.040  Sum_probs=66.6

Q ss_pred             chhhhhhHhhHHHHHHHHHHHHHHHhhhcCCccCCCccc-ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHH
Q 036242          165 PAWFYLHVACQVSAYIIGVAGWATGIDLSSGISSLNRDY-IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWA  243 (330)
Q Consensus       165 ~~Wf~~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~~~~~-~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~  243 (330)
                      +.=|.+|-.+|++++++.-.=-++.+....  ..+...+ .|..+=.+.+++.++-....|-.+... + .+-+--+|-|
T Consensus        44 ~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~--~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~-~-i~nlySLHSW  119 (231)
T PLN02810         44 NLIFNLHPVLMLIGLIIIGGEAIMSYKSLP--LKKEVKKLIHLVLHAIALILGIFGICAAFKNHNES-G-IANLYSLHSW  119 (231)
T ss_pred             CceeeehHHHHHHHHHHHhhHHHHHhhccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-C-CCceeeHHHH
Confidence            447899999999999887766677775433  1222233 898888888888777666655444422 2 2334446999


Q ss_pred             HHHHHHHHHHHHHHHhcc
Q 036242          244 VGYAIIVTSVFNVLKGLS  261 (330)
Q Consensus       244 ~G~~~~ilai~ni~~Gl~  261 (330)
                      +|..+++|-..|-..|+.
T Consensus       120 lGl~tv~Lf~lQw~~Gf~  137 (231)
T PLN02810        120 LGIGIISLYGIQWIYGFI  137 (231)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999994

>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []

Probab=91.19  E-value=1.9  Score=36.04  Aligned_cols=76  Identities=13%  Similarity=0.078  Sum_probs=44.0

Q ss_pred             cchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHHHHH
Q 036242          205 HRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTAISSGIIS  284 (330)
Q Consensus       205 H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~~~~~~~~~v~~~~~~~  284 (330)
                      +..+++..+++.++=.+.=+ |+.+   .++++..+..+.||.++.+=+..+..+.      ..+....+.++.+..+++
T Consensus        33 ~~i~~~Y~i~fg~ll~~~E~-~~~~---i~~~~~FL~~~~GRGlfyif~G~l~~~~------~~~~~i~g~~~~~~G~~~  102 (136)
T PF08507_consen   33 SFILGVYCILFGLLLILAEF-RWPF---IRKYFGFLYSYIGRGLFYIFLGTLCLGQ------SILSIIIGLLLFLVGVIY  102 (136)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-ccHH---HHHhHhHHHhHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHH
Confidence            55556555555544433322 1111   6788899999999998877666666665      212223344444455556


Q ss_pred             HHHhhe
Q 036242          285 AALEAI  290 (330)
Q Consensus       285 i~lev~  290 (330)
                      +.+...
T Consensus       103 i~l~~~  108 (136)
T PF08507_consen  103 IILGFF  108 (136)
T ss_pred             HHHHHH
Confidence            666554

In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].

>PF13172 PepSY_TM_1: PepSY-associated TM helix

Probab=89.93  E-value=0.49  Score=29.83  Aligned_cols=32  Identities=22%  Similarity=0.365  Sum_probs=26.8

Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHhccccC
Q 036242          233 YRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLD  264 (330)
Q Consensus       233 ~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~  264 (330)
                      .|+.+..+|+++|..+.+.-+.-+.+|+.+..
T Consensus         1 ~r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~~   32 (34)
T PF13172_consen    1 FRKFWRKIHRWLGLIAAIFLLLLALTGALLNF   32 (34)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            36778889999999999999999999987653

>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function

Probab=89.21  E-value=1.4  Score=35.80  Aligned_cols=71  Identities=18%  Similarity=0.227  Sum_probs=50.3

Q ss_pred             ccchhhHHHHHHHHHHHhheeeccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhcccc----CCCcchhhHHHHHHHH
Q 036242          204 IHRNIGIALFFLATVQVFALLLRPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLL----DPEIQWWHAYIVTAIS  279 (330)
Q Consensus       204 ~H~~iGi~~~~l~~~Q~l~g~~rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~----~~~~~~~~~~~~~v~~  279 (330)
                      .|-++|.++.++.++-.+.++.+|.++.+.|      |.+++..+++..+..+.+=...-    ++.-.|.+.|.....+
T Consensus        30 inliiG~vT~l~VLvtii~afvf~~~~p~p~------~iffavcI~l~~~s~~lLI~WYR~gdl~Pkfr~li~~~~~~iv  103 (118)
T PF10856_consen   30 INLIIGAVTSLFVLVTIISAFVFPQDPPKPL------HIFFAVCILLICISAILLIFWYRQGDLDPKFRYLIYYNCFSIV  103 (118)
T ss_pred             EEeehHHHHHHHHHHHHhheEEecCCCCCce------EEehHHHHHHHHHHHHhheeehhcCCCChhHHHHHHHHHHHHH
Confidence            8999999999999999999999987654333      88888888888888877654432    2333465655444433


Q ss_pred             H
Q 036242          280 S  280 (330)
Q Consensus       280 ~  280 (330)
                      +
T Consensus       104 l  104 (118)
T PF10856_consen  104 L  104 (118)
T ss_pred             H
Confidence            3

>COG5658 Predicted integral membrane protein [Function unknown]

Probab=84.98  E-value=2.5  Score=37.97  Aligned_cols=60  Identities=12%  Similarity=0.072  Sum_probs=42.3

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHHHHHHHHhhee
Q 036242          232 KYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDPEIQWWHAYIVTAISSGIISAALEAIT  291 (330)
Q Consensus       232 ~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~~~~~~~~~~~~v~~~~~~~i~lev~~  291 (330)
                      +.+..|++.|+++|-..++.+.+..+.+.......+-+...+...++..+...+.+.+..
T Consensus        40 ~d~~~wk~a~~~l~pl~vi~gl~~~~~~~l~~~~~~~~~~v~~~~~~~Il~li~~ls~~l   99 (204)
T COG5658          40 PDQAMWKKAGLFLGPLLVIGGLVTRYMSLLAGGQGQMLLAVALFAAVLILFLILLLSAIL   99 (204)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445689999999999999999999998877766655565555555554444444444443

>PF13630 SdpI: SdpI/YhfL protein family

Probab=84.21  E-value=2  Score=31.68  Aligned_cols=33  Identities=21%  Similarity=0.339  Sum_probs=28.1

Q ss_pred             CCcchhhHHHHHHHHHHHHHHHHHHHHhccccC
Q 036242          232 KYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLD  264 (330)
Q Consensus       232 ~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~  264 (330)
                      +....|+..|+..|...++.|++.+..|+-...
T Consensus        18 ~s~~~W~~a~r~~g~~~~~~Gi~~~~~~~~~~~   50 (76)
T PF13630_consen   18 KSDENWKKAHRFAGKIFIIGGIVLLIIGIIILF   50 (76)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344689999999999999999999998887654

>PF13706 PepSY_TM_3: PepSY-associated TM helix

Probab=84.16  E-value=1.9  Score=27.77  Aligned_cols=29  Identities=17%  Similarity=0.154  Sum_probs=24.0

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhccc
Q 036242          234 RLYWNIYHWAVGYAIIVTSVFNVLKGLSL  262 (330)
Q Consensus       234 R~~~~~~H~~~G~~~~ilai~ni~~Gl~l  262 (330)
                      |+.+...|+|+|.++-++-.+-+++|...
T Consensus         1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~   29 (37)
T PF13706_consen    1 RRILRKLHRWLGLILGLLLFVIFLTGAVM   29 (37)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            56778899999999988888888888653

>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes

Probab=83.09  E-value=6.8  Score=33.54  Aligned_cols=126  Identities=13%  Similarity=0.112  Sum_probs=71.6

Q ss_pred             hhhhhhhhhH----hhhhhhHHHHh---hhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhh---------------
Q 036242          135 RKRNFHQFLS----ILMPMGAMMAR---YLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDL---------------  192 (330)
Q Consensus       135 ~~~~~Hg~lM----il~p~gi~~aR---~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~---------------  192 (330)
                      ..+..|-+..    +++..|..+..   ............+.+|..+-.+-.++.+.=+...+..               
T Consensus         7 ~~R~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (188)
T PF00033_consen    7 FTRLLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIP   86 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHH
Confidence            4556776555    66677777652   1111112345678899887766555554444444443               


Q ss_pred             ---cCC----ccCCCcccccchhhHHHHHHHHHHHhheeec--------cCC---CCCCcchhhHHHHHHHHHHHHHHHH
Q 036242          193 ---SSG----ISSLNRDYIHRNIGIALFFLATVQVFALLLR--------PKP---DHKYRLYWNIYHWAVGYAIIVTSVF  254 (330)
Q Consensus       193 ---~~~----~~~~~~~~~H~~iGi~~~~l~~~Q~l~g~~r--------p~~---~~~~R~~~~~~H~~~G~~~~ilai~  254 (330)
                         ...    ...+..+...+..-++++.+..++++.|++.        +..   ....+.....+|.+.+.+++++-++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~  166 (188)
T PF00033_consen   87 QYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIII  166 (188)
T ss_dssp             HHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence               000    0111222277777788888888888888655        111   1123456788888888888777776


Q ss_pred             HHHHhc
Q 036242          255 NVLKGL  260 (330)
Q Consensus       255 ni~~Gl  260 (330)
                      =++.++
T Consensus       167 Hi~~a~  172 (188)
T PF00033_consen  167 HIYAAI  172 (188)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666554

The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.

>PRK10179 formate dehydrogenase-N subunit gamma; Provisional

Probab=83.09  E-value=3.8  Score=37.04  Aligned_cols=29  Identities=10%  Similarity=0.093  Sum_probs=25.6

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhcccc
Q 036242          235 LYWNIYHWAVGYAIIVTSVFNVLKGLSLL  263 (330)
Q Consensus       235 ~~~~~~H~~~G~~~~ilai~ni~~Gl~l~  263 (330)
                      ..+|...+.....+++++++.+.+|+.++
T Consensus       107 gk~N~~QKl~y~~i~~~~~~~i~TGl~l~  135 (217)
T PRK10179        107 GKYNAGQKMMFWSIMSMIFVLLVTGVIIW  135 (217)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35899999999999999999999999886

>KOG1619 consensus Cytochrome b [Energy production and conversion]

Probab=82.97  E-value=11  Score=34.71  Aligned_cols=92  Identities=23%  Similarity=0.271  Sum_probs=57.1

Q ss_pred             ccchhhhhhhhhH-hhhhhhH--HHHhhhcccccCCchhhhhhHhhHHHHHHHHHHHHHHHhhh--cCCccCCCcc----
Q 036242          132 SRQRKRNFHQFLS-ILMPMGA--MMARYLKVFRFGNPAWFYLHVACQVSAYIIGVAGWATGIDL--SSGISSLNRD----  202 (330)
Q Consensus       132 ~~~~~~~~Hg~lM-il~p~gi--~~aR~~k~~~~~~~~Wf~~H~~~q~~~~~l~i~g~~~~~~~--~~~~~~~~~~----  202 (330)
                      +++..+.+|..|- +-+++++  +.+-+.-+-..+-+.-..+|-.+-+..+++..+=++.||..  ..+ ......    
T Consensus        84 ~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg-~~~~~Rs~lm  162 (245)
T KOG1619|consen   84 SKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGIANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPG-SPESYRSRLM  162 (245)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCccHHhhhh
Confidence            3456678898887 3333332  22222111111224455699999988888877766666653  221 111111    


Q ss_pred             cccchhhHHHHHHHHHHHhhee
Q 036242          203 YIHRNIGIALFFLATVQVFALL  224 (330)
Q Consensus       203 ~~H~~iGi~~~~l~~~Q~l~g~  224 (330)
                      -.|..+|+.++++++.|.+.|+
T Consensus       163 P~H~~~Gl~~f~lai~ta~~Gl  184 (245)
T KOG1619|consen  163 PWHVFLGLAIFILAIVTALTGL  184 (245)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            2999999999999999999998

>PF13301 DUF4079: Protein of unknown function (DUF4079)

Probab=82.12  E-value=10  Score=33.26  Aligned_cols=116  Identities=15%  Similarity=0.164  Sum_probs=72.3

Q ss_pred             hhhhhhH--hhhhhhHHHHhhhccccc---CCc--hhhh-----------hhHhhHHHHHHHHHHHHHHHhhhcCCccCC
Q 036242          138 NFHQFLS--ILMPMGAMMARYLKVFRF---GNP--AWFY-----------LHVACQVSAYIIGVAGWATGIDLSSGISSL  199 (330)
Q Consensus       138 ~~Hg~lM--il~p~gi~~aR~~k~~~~---~~~--~Wf~-----------~H~~~q~~~~~l~i~g~~~~~~~~~~~~~~  199 (330)
                      ..|+++|  +++|.+....|..-..+.   ...  .|..           .|.+.+....++...+-.-.+...      
T Consensus         4 liHP~lm~~~vf~~~~~~~~lG~q~R~rR~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~------   77 (175)
T PF13301_consen    4 LIHPVLMGLLVFPVGGYAIYLGWQWRQRRLQENHGRWLTGGVVVAVLIALAYSIARAIFLILALTGTRKELVKL------   77 (175)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhccccccchhcccchhhHHHHHHHHHHHHHHHHHhh------
Confidence            5799999  558998877765422210   111  1221           123334444444444433333311      


Q ss_pred             CcccccchhhHHHHHHHHHHHhheee----ccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHhccccCC
Q 036242          200 NRDYIHRNIGIALFFLATVQVFALLL----RPKPDHKYRLYWNIYHWAVGYAIIVTSVFNVLKGLSLLDP  265 (330)
Q Consensus       200 ~~~~~H~~iGi~~~~l~~~Q~l~g~~----rp~~~~~~R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~  265 (330)
                      .....|..+|..+++++.+-.+.|..    +.++      ++.--|-|.|.++..|=.++..+.-+.+..
T Consensus        78 ~~r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~~------lf~spH~~~Gl~~~~L~~~s~al~~~i~~g  141 (175)
T PF13301_consen   78 KARDRHYRLGFALLAFMGLGALGGQLGTYRQNGK------LFWSPHLWAGLAVVGLMAFSAALVPQIQKG  141 (175)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcchHHHHHcCCC------CccCchHHHHHHHHHHHHHHHHHHHHHccC
Confidence            12348999999999999999887742    2222      444449999999999999999888887753

>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function

Probab=80.41  E-value=1.4  Score=34.96  Aligned_cols=30  Identities=17%  Similarity=0.152  Sum_probs=23.9

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhcccc
Q 036242          234 RLYWNIYHWAVGYAIIVTSVFNVLKGLSLL  263 (330)
Q Consensus       234 R~~~~~~H~~~G~~~~ilai~ni~~Gl~l~  263 (330)
                      |+.....|+++||+-+++..+....|+.+.
T Consensus         2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~i~   31 (103)
T PF10067_consen    2 RRKGPRLHRWLGRVYVAAMLISALSALFIA   31 (103)
T ss_pred             CCCcccHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            444556799999999999988888888764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	330
1d7b_A	186	Cellobiose dehydrogenase; B-type cytochrome, Met/H	98.78
4gd3_A	235	NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-	86.83

>1d7b_A Cellobiose dehydrogenase; B-type cytochrome, Met/His ligation, beta sandwich, Fe(II)- protoporphyrin IX, oxidoreductase; HET: NAG BMA HEM 1PG; 1.90A {Phanerochaete chrysosporium} SCOP: b.1.9.1 PDB: 1d7d_A* 1d7c_A* 1pl3_A*

Probab=98.78  E-value=2.6e-08  Score=86.85  Aligned_cols=79  Identities=20%  Similarity=0.234  Sum_probs=60.1

Q ss_pred             EEEEEEEcCCC-CcEEEEEEcCCCCCCCCCCeEEEEEcCCCcEEEEEeecCCCCCCC-CCCCcceeeeeeeEEEECCEEE
Q 036242           14 VDLAFRRSTPS-SQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYTSPIGSGTPTL-QEGSLSFRVTNITATLVGNEWT   91 (330)
Q Consensus        14 i~~~~~~~~~~-~gWVavGfs~~g~~M~gsd~vI~~~~~~G~v~v~~~~~~g~~~p~-~~~~~~~~l~~~s~~~~~g~~~   91 (330)
                      -+|.++++.|. .||+|+|+.   .+|.|++++|+|.|+ |++++++|+.+|+..|. .+++.++.++..+ .++++.++
T Consensus        42 ~d~~~qi~~p~~~gW~g~g~G---g~M~gs~l~v~w~~~-~~v~~S~R~a~g~~~P~~y~~~~~~~lL~gs-~vn~t~~~  116 (186)
T 1d7b_A           42 TEFIGEVVAPIASKWIGIALG---GAMNNDLLLVAWANG-NQIVSSTRWATGYVQPTAYTGTATLTTLPET-TINSTHWK  116 (186)
T ss_dssp             CCEEEEEEEETTCCEEEEETT---SSSSSSCEEEEEEET-TEEEEEEEECSSSSCCEECCSSCEEEECTTC-EECSSEEE
T ss_pred             ccEEEEEEccCCCCEEEEecC---CCCCCCcEEEEEeCC-CEEEEEEEEecCccCCCccCCCceEEEcccc-cEeCCEEE
Confidence            35666666665 899999994   459999999999986 89999999999998875 5544555555432 26888888


Q ss_pred             EEEEEe
Q 036242           92 IFARLH   97 (330)
Q Consensus        92 ~~~~~~   97 (330)
                      +-++.+
T Consensus       117 ~~f~C~  122 (186)
T 1d7b_A          117 WVFRCQ  122 (186)
T ss_dssp             EEEEEE
T ss_pred             EEEEeC
Confidence            755544

>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}

Probab=86.83  E-value=2.5  Score=37.11  Aligned_cols=21  Identities=14%  Similarity=0.379  Sum_probs=16.6

Q ss_pred             ccchhhHHHHHHHHHHHhhee
Q 036242          204 IHRNIGIALFFLATVQVFALL  224 (330)
Q Consensus       204 ~H~~iGi~~~~l~~~Q~l~g~  224 (330)
                      .|..+|++++++.++-.+.++
T Consensus        62 ~H~~~G~~~~~l~~~Rl~w~~   82 (235)
T 4gd3_A           62 IHFSAGMVFTVVLLMRIYWAF   82 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            699999999888887766544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	330
d1pl3a_	186	Cytochrome domain of cellobiose dehydrogenase {Fun	98.88
d1kqfc_	216	Formate dehydrogenase N, cytochrome (gamma) subuni	83.79

>d1pl3a_ b.1.9.1 (A:) Cytochrome domain of cellobiose dehydrogenase {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: CBD9-like
family: Cytochrome domain of cellobiose dehydrogenase
domain: Cytochrome domain of cellobiose dehydrogenase
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=98.88  E-value=5.5e-09  Score=89.16  Aligned_cols=79  Identities=18%  Similarity=0.198  Sum_probs=58.9

Q ss_pred             EEEEEEEEcCCC-CcEEEEEEcCCCCCCCCCCeEEEEEcCCCcEEEEEeecCCCCCCC-CCCCcceeeeeeeEEEECCEE
Q 036242           13 VVDLAFRRSTPS-SQWVTWALNPSGQRMAGSKCHVAFRNSTGAIRAYTSPIGSGTPTL-QEGSLSFRVTNITATLVGNEW   90 (330)
Q Consensus        13 ~i~~~~~~~~~~-~gWVavGfs~~g~~M~gsd~vI~~~~~~G~v~v~~~~~~g~~~p~-~~~~~~~~l~~~s~~~~~g~~   90 (330)
                      .-++.+++..|. .||+|+||+   .+|.|++++|+|.+ +|++++++|+.+|+.+|. .+++.+..++. +..++++.+
T Consensus        41 ~~d~i~qi~ap~~~GWvgiG~g---g~M~gs~l~V~w~~-~~~v~~S~R~atG~~~P~~~~~~~~~~~l~-~s~vn~t~~  115 (186)
T d1pl3a_          41 STEFIGEVVAPIASKWIGIALG---GAHNNDLLLVAWAN-GNQIVSSTRWATGYVQPTAYTGTATLTTLP-ETTINSTHW  115 (186)
T ss_dssp             CCCEEEEEEEETTCCEEEEETT---SSSSSSCEEEEEEE-TTEEEEEEEECSTTSCCEECCSSCEEEECT-TCEECSSEE
T ss_pred             CcCEEEEEeCCCCCcEEEEEcC---CCCCCCcEEEEEec-CCeEEEEEEEecceeCCcccCCCceEEEcc-CceEECCEE
Confidence            346666777676 999999995   44999999999997 589999999999998874 34333333443 345678888


Q ss_pred             EEEEEE
Q 036242           91 TIFARL   96 (330)
Q Consensus        91 ~~~~~~   96 (330)
                      +.-++.
T Consensus       116 ~~~f~C  121 (186)
T d1pl3a_         116 KWVFRC  121 (186)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            875554

>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Heme-binding four-helical bundle
superfamily: Transmembrane di-heme cytochromes
family: Formate dehydrogenase N, cytochrome (gamma) subunit
domain: Formate dehydrogenase N, cytochrome (gamma) subunit
species: Escherichia coli [TaxId: 562]

Probab=83.79  E-value=6.4  Score=31.59  Aligned_cols=31  Identities=13%  Similarity=0.165  Sum_probs=26.7

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhccccCC
Q 036242          235 LYWNIYHWAVGYAIIVTSVFNVLKGLSLLDP  265 (330)
Q Consensus       235 ~~~~~~H~~~G~~~~ilai~ni~~Gl~l~~~  265 (330)
                      ..+|...+....++++++++.+.+|+.++.+
T Consensus       106 ~~~n~~qkl~~~~~~~~~~~~~~TGl~l~~~  136 (216)
T d1kqfc_         106 GKYNAGQKMMFWSIMSMIFVLLVTGVIIWRP  136 (216)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3568899999999999999999999988754