Citrus Sinensis ID: 036254

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQNENRINKVLLWFD
Secondary Structure (PSIPRED)
cHHHHccccccccccccccccccEEEEEEEccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHccccHHHHHcccccccccEEEEEEcccccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccccccEEEEEcEEEEEEccccccccccHHHcccccccccccEEEEEEcccccccHHHHHHHHHHHHHHccccHHHHHHccccccccEEEEEEccccccccccccEEEEEEc
Coil and Loop (DISEMBL)
mrglysyfqgnndqsakitmtapvltniipsingpfcnsqlqahpiklpkhkYVVVRRFgglmddtsiSTQASALKKSFKNSTWESAIIFNYkisddhlsvagynspfqnenrINKVLLWFD
Flexible Loop (DISEMBL)
MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGynspfqnenrinkvLLWFD
Low Complexity Region (SEG)
MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQNENRINKVLLWFD
Disordered region (IsUnstruct)
******YF*******AKITMTAPVLTNIIPSINGPFCNSQLQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQNENRINKVLLWF*
Disordered Region (DISOPRED)
MRGLYSYFQGNNDQSAKITMTAPVLTNII**********************KYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQNENRINKVLLWFD
Disordered Region (DISEMBL)
MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQNENRINKVLLWFD
Disordered Region (DISPRO)
MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQNENRINKVLLWFD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQNENRINKVLLWFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
Q9Y5Z4	205	Heme-binding protein 2 OS	yes	no	0.868	0.517	0.323	0.0003
Q9WU63	205	Heme-binding protein 2 OS	yes	no	0.877	0.521	0.296	0.0007

>sp|Q9Y5Z4|HEBP2_HUMAN Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE=1 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 60/136 (44%), Gaps = 30/136 (22%)

Query: 4   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------- 45
           L SY QG N++  KI MTAPV + + P  +GPF  S +          Q  P        
Sbjct: 69  LNSYIQGKNEKEMKIKMTAPVTSYVEPG-SGPFSESTITISLYIPSEQQFDPPRPLESDV 127

Query: 46  -IKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHL-SVAG 103
            I+      V VR F G          +SA K   +  T  S +  + K+ D+ +   AG
Sbjct: 128 FIEDRAEMTVFVRSFDGF---------SSAQKNQEQLLTLASILREDGKVFDEKVYYTAG 178

Query: 104 YNSPFQNENRINKVLL 119
           YNSP +  NR N+V L
Sbjct: 179 YNSPVKLLNRNNEVWL 194

Can promote mitochondrial permeability transition and facilitate necrotic cell death under different types of stress conditions. Does not bind hemin.
Homo sapiens (taxid: 9606)

>sp|Q9WU63|HEBP2_MOUSE Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE=1 SV=1

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 54/135 (40%), Gaps = 28/135 (20%)

Query: 4   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------- 45
           L  Y QG N++  KI +TAPV + + P  + PF  S +          Q  P        
Sbjct: 69  LNGYIQGKNEKEMKIKLTAPVTSYVEPG-SSPFSESTITISLYIPSEQQPDPPRPSESDV 127

Query: 46  -IKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGY 104
            I+      V VR F G         Q   L    +    E   +FN K+       AGY
Sbjct: 128 FIEDRAEMTVFVRSFDGFSSGQKNQEQLLTLANILR----EEGKVFNEKV----FYTAGY 179

Query: 105 NSPFQNENRINKVLL 119
           +SPFQ  +R N+V L
Sbjct: 180 SSPFQLLDRNNEVWL 194

Can promote mitochondrial permeability transition and facilitate necrotic cell death under different types of stress conditions. Does not bind hemin (By similarity). May have low affinity for heme.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
225425256	216	PREDICTED: heme-binding protein 2-like [	0.950	0.537	0.532	5e-33
296085522	159	unnamed protein product [Vitis vinifera]	0.950	0.729	0.532	8e-33
224053561	229	predicted protein [Populus trichocarpa]	0.959	0.510	0.449	3e-25
388493350	227	unknown [Medicago truncatula]	0.967	0.519	0.386	1e-17
351723865	234	uncharacterized protein LOC100305993 pre	0.983	0.512	0.373	1e-16
356498208	234	PREDICTED: heme-binding protein 2-like [	0.991	0.517	0.354	1e-16
255578538	234	Heme-binding protein, putative [Ricinus	0.967	0.504	0.352	2e-16
356556908	239	PREDICTED: heme-binding protein 2-like [	0.983	0.502	0.352	3e-16
224061347	226	predicted protein [Populus trichocarpa]	0.959	0.517	0.362	4e-16
15220033	232	SOUL heme-binding protein [Arabidopsis t	0.967	0.508	0.371	7e-16

>gi|225425256|ref|XP_002269974.1| PREDICTED: heme-binding protein 2-like [Vitis vinifera]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 73/137 (53%), Positives = 90/137 (65%), Gaps = 21/137 (15%)

Query: 4   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL------------------QAHP 45
           L++Y QGNNDQ AKI MTAPVL +I PS  GPFCNS                    QAH 
Sbjct: 81  LFAYIQGNNDQRAKIDMTAPVLVDIFPS-TGPFCNSSFIMYFYVPTKYQNNPPLSAQAHQ 139

Query: 46  IKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYN 105
           +KLPKHKY  VRRFGG MDD++I TQA AL++S K + WE++I    ++     SVAGYN
Sbjct: 140 VKLPKHKYAAVRRFGGFMDDSNIPTQALALRRSLKGTPWETSISTKNRVLT--YSVAGYN 197

Query: 106 SPFQNENRINKVLLWFD 122
           SPF+ ENR+N+V+ WFD
Sbjct: 198 SPFEYENRVNEVIFWFD 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085522|emb|CBI29254.3| unnamed protein product [Vitis vinifera]

 Score =  144 bits (362), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 73/137 (53%), Positives = 90/137 (65%), Gaps = 21/137 (15%)

Query: 4   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL------------------QAHP 45
           L++Y QGNNDQ AKI MTAPVL +I PS  GPFCNS                    QAH 
Sbjct: 24  LFAYIQGNNDQRAKIDMTAPVLVDIFPS-TGPFCNSSFIMYFYVPTKYQNNPPLSAQAHQ 82

Query: 46  IKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYN 105
           +KLPKHKY  VRRFGG MDD++I TQA AL++S K + WE++I    ++     SVAGYN
Sbjct: 83  VKLPKHKYAAVRRFGGFMDDSNIPTQALALRRSLKGTPWETSISTKNRVLT--YSVAGYN 140

Query: 106 SPFQNENRINKVLLWFD 122
           SPF+ ENR+N+V+ WFD
Sbjct: 141 SPFEYENRVNEVIFWFD 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053561|ref|XP_002297873.1| predicted protein [Populus trichocarpa] gi|222845131|gb|EEE82678.1| predicted protein [Populus trichocarpa]

 Score =  118 bits (296), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/138 (44%), Positives = 81/138 (58%), Gaps = 21/138 (15%)

Query: 4   LYSYFQGNNDQSAKITMTAPVLTNIIPSI-------------------NGPFCNSQLQAH 44
           L +Y QGNNDQ+A I MTAPVL ++  S                    N P  + Q+  H
Sbjct: 94  LATYIQGNNDQAANINMTAPVLVDMFSSTASSRNTTFTVHLYLPQKYQNNPPLSRQV--H 151

Query: 45  PIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGY 104
           P+KLPKH++  V+RFGG M+DT+I  Q  ALKKS + + WES+I           SVAGY
Sbjct: 152 PVKLPKHRHAAVKRFGGFMNDTNIPGQVLALKKSLEGTPWESSIARTQSRGRVPCSVAGY 211

Query: 105 NSPFQNENRINKVLLWFD 122
           NSP++ ENR N+V+ WFD
Sbjct: 212 NSPYEYENRANEVMFWFD 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493350|gb|AFK34741.1| unknown [Medicago truncatula]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 78/137 (56%), Gaps = 19/137 (13%)

Query: 4   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------I 46
           L+ Y QG N+   KI MTAPVL+ ++PS +GPFC S            QA+P       +
Sbjct: 84  LFDYIQGKNNYQQKIEMTAPVLSEVLPS-DGPFCESSFVVSFYVPKVNQANPPPAKGLHV 142

Query: 47  KLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHL-SVAGYN 105
           +  K  Y  V++FGG + DT+I  +A+ALK S   + W SAI  + +     + SVA YN
Sbjct: 143 QRWKTVYAAVKQFGGFVKDTNIGEEAAALKDSIAGTKWSSAIEQSRRAGHASVYSVAQYN 202

Query: 106 SPFQNENRINKVLLWFD 122
           +PF+ +NR+N++   FD
Sbjct: 203 APFEYDNRVNEIWFLFD 219

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723865|ref|NP_001236014.1| uncharacterized protein LOC100305993 precursor [Glycine max] gi|255627213|gb|ACU13951.1| unknown [Glycine max]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 79/142 (55%), Gaps = 22/142 (15%)

Query: 1   MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP----- 45
            R L+ Y QG N+   KI MTAPV++ ++PS +GPFC S            QA+P     
Sbjct: 87  FRRLFDYIQGKNNYKQKIEMTAPVISEVLPS-DGPFCESSFVVSFDVPKENQANPPPAKG 145

Query: 46  --IKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLS--- 100
             ++  K  +V VR+FGG + D+S+  +A+ALK S   + W  A+  + K +  H S   
Sbjct: 146 LQVQRWKTVFVAVRQFGGFVKDSSVGEEAAALKASIAGTKWADAVEKSQKRA-GHASVYT 204

Query: 101 VAGYNSPFQNENRINKVLLWFD 122
           VA YN+PF+  NR+N++   FD
Sbjct: 205 VAQYNAPFEYVNRVNEIWFLFD 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498208|ref|XP_003517945.1| PREDICTED: heme-binding protein 2-like [Glycine max] gi|255640875|gb|ACU20720.1| unknown [Glycine max]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 20/141 (14%)

Query: 1   MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP----- 45
            R L+ Y QG N+   KI MTAPV++ ++PS +GPFC S            QA+P     
Sbjct: 87  FRRLFDYIQGKNNYKQKIEMTAPVISEVLPS-DGPFCESSFVVSFYVPKENQANPPPAKG 145

Query: 46  --IKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDH--LSV 101
             ++  K  +  VR+FGG + D+S+  +A+ALK S   + W  A+  + K +      +V
Sbjct: 146 LHVQRWKTVFAAVRQFGGFVKDSSVGEEAAALKASIAGTKWADAVEKSQKRAGHASVYTV 205

Query: 102 AGYNSPFQNENRINKVLLWFD 122
           A YN+PF+ +NR+N++   FD
Sbjct: 206 AQYNAPFEYDNRVNEIWFLFD 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578538|ref|XP_002530132.1| Heme-binding protein, putative [Ricinus communis] gi|223530357|gb|EEF32248.1| Heme-binding protein, putative [Ricinus communis]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 79/139 (56%), Gaps = 21/139 (15%)

Query: 4   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------I 46
           L+ Y QG N    +I MTAPV+T ++PS +GPFC S            QA+P       +
Sbjct: 93  LFDYIQGKNSYGQQIEMTAPVITEVLPS-DGPFCESSFTVSFYIPKENQANPPPAKGLHV 151

Query: 47  KLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLS---VAG 103
           +  K  Y  VR+F G + D+++  +A+AL+ S  ++ W +AI  ++  +D   S   VA 
Sbjct: 152 QRWKQTYAAVRQFSGFVTDSNVGEEAAALQASIADTKWAAAIEKSHDAADRTTSVYTVAQ 211

Query: 104 YNSPFQNENRINKVLLWFD 122
           YNSPF+ ++R+N++ + FD
Sbjct: 212 YNSPFEFDSRVNEIWMLFD 230

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556908|ref|XP_003546762.1| PREDICTED: heme-binding protein 2-like [Glycine max]

 Score = 89.4 bits (220), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 78/139 (56%), Gaps = 19/139 (13%)

Query: 2   RGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP------ 45
           R L+ Y QG N+   KI MTAPV+T + PS +GPFC S            QA+P      
Sbjct: 94  RSLFDYIQGKNNYKQKIEMTAPVITEVSPS-DGPFCKSSFVVSFFVPKLNQANPPPAKGL 152

Query: 46  -IKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHL-SVAG 103
            ++   + YV  R+FGG ++D++++ +A+ L+ S + + W  AI  N K     + +VA 
Sbjct: 153 HVQRWNNMYVAARQFGGHVNDSNVAVEAAVLRASIEGTKWSGAIDKNQKAGHASVYTVAQ 212

Query: 104 YNSPFQNENRINKVLLWFD 122
           YN PF+ +NR+N++   F+
Sbjct: 213 YNDPFEYQNRVNEIWFLFE 231

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061347|ref|XP_002300435.1| predicted protein [Populus trichocarpa] gi|118487939|gb|ABK95791.1| unknown [Populus trichocarpa] gi|222847693|gb|EEE85240.1| predicted protein [Populus trichocarpa]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/135 (36%), Positives = 76/135 (56%), Gaps = 18/135 (13%)

Query: 4   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------I 46
           L+ Y QG N    KI MTAPV+T + PS +GPFC S            QA+P       +
Sbjct: 84  LFDYIQGKNSYEEKIEMTAPVITEVSPS-DGPFCESSFTVSFYVPKENQANPPPAKGLHV 142

Query: 47  KLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNS 106
           +  +  YV VR+F G + D+++  +A+AL+ S  ++ W +AI  +   S    +VA YNS
Sbjct: 143 QRWQPTYVAVRQFNGFVTDSNVGEEAAALQASLADTIWAAAIEKSRPDSTTVYTVAQYNS 202

Query: 107 PFQNENRINKVLLWF 121
           PF+ +NR+N++ + F
Sbjct: 203 PFEFDNRVNEIWMQF 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15220033|ref|NP_173153.1| SOUL heme-binding protein [Arabidopsis thaliana] gi|5734756|gb|AAD50021.1|AC007651_16 Similar to SOUL Protein [Arabidopsis thaliana] gi|21592576|gb|AAM64525.1| SOUL-like protein [Arabidopsis thaliana] gi|88196741|gb|ABD43013.1| At1g17100 [Arabidopsis thaliana] gi|332191420|gb|AEE29541.1| SOUL heme-binding protein [Arabidopsis thaliana]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 73/140 (52%), Gaps = 22/140 (15%)

Query: 4   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQA--------HPIKLPKH---- 51
           L++Y QG N+   KI MTAPV++ + PS +GPFC S             P   P      
Sbjct: 91  LFAYIQGKNEYHQKIEMTAPVISQVSPS-DGPFCESSFTVSFYVPKKNQPDPAPSENLHI 149

Query: 52  -----KYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKI----SDDHLSVA 102
                +YV VR+F G + D SI  QA+AL  S K + W +AI  + +     SD   +VA
Sbjct: 150 QKWNSRYVAVRQFSGFVSDDSIGEQAAALDSSLKGTAWANAIAKSKEDGGVGSDSAYTVA 209

Query: 103 GYNSPFQNENRINKVLLWFD 122
            YNSPF+   R+N++ L F+
Sbjct: 210 QYNSPFEFSGRVNEIWLPFE 229

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TAIR|locus:2020307	232	HBP1 "AT1G17100" [Arabidopsis	0.975	0.512	0.359	1.6e-13
TAIR|locus:2032055	219	AT1G78460 [Arabidopsis thalian	0.975	0.543	0.313	4.1e-07
UNIPROTKB|E1BFP1	205	HEBP2 "Uncharacterized protein	0.942	0.560	0.314	4.6e-06
UNIPROTKB|Q9Y5Z4	205	HEBP2 "Heme-binding protein 2"	0.918	0.546	0.330	7.9e-06
UNIPROTKB|F1S6A9	205	HEBP2 "Uncharacterized protein	0.942	0.560	0.307	7.9e-06
TAIR|locus:2032065	225	AT1G78450 "AT1G78450" [Arabido	0.950	0.515	0.263	8e-06
ZFIN|ZDB-GENE-040426-914	190	hebp2 "heme binding protein 2"	0.893	0.573	0.306	2.3e-05
UNIPROTKB|E1BXL4	159	HEBP2 "Uncharacterized protein	0.877	0.672	0.295	2.4e-05
RGD|1311553	203	Hebp2 "heme binding protein 2"	0.909	0.546	0.290	3.8e-05

TAIR|locus:2020307 HBP1 "AT1G17100" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 50/139 (35%), Positives = 73/139 (52%)

Query:     4 LYSYFQGNNDQSAKITMTAPVLTNIIPS----INGPFCNS-----QLQAHP-----IKLP 49
             L++Y QG N+   KI MTAPV++ + PS        F  S     + Q  P     + + 
Sbjct:    91 LFAYIQGKNEYHQKIEMTAPVISQVSPSDGPFCESSFTVSFYVPKKNQPDPAPSENLHIQ 150

Query:    50 K--HKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKI----SDDHLSVAG 103
             K   +YV VR+F G + D SI  QA+AL  S K + W +AI  + +     SD   +VA 
Sbjct:   151 KWNSRYVAVRQFSGFVSDDSIGEQAAALDSSLKGTAWANAIAKSKEDGGVGSDSAYTVAQ 210

Query:   104 YNSPFQNENRINKVLLWFD 122
             YNSPF+   R+N++ L F+
Sbjct:   211 YNSPFEFSGRVNEIWLPFE 229

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2032055 AT1G78460 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 42/134 (31%), Positives = 66/134 (49%)

Query:     2 RGLYSYFQGNNDQSAKITMTAPVLTNIIP-------SINGPFCNSQL--QAHP--IKLPK 50
             R L  Y +G+N  + K+ MTAPV+    P       S+  P  N Q   QA    ++  K
Sbjct:    87 RRLNRYIEGDNKSNVKMNMTAPVIAQATPGRSVYTVSLYLPKKNQQNPPQADDLHVRSTK 146

Query:    51 HKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNY-KISDDHLSVAGYNSPFQ 109
               YV VR+ GG + +     +A+AL +S ++S W   I  +  K+    L+V  YN P  
Sbjct:   147 PTYVAVRQIGGYVSNNVAKDEAAALMESLRDSNWILPIEKSKGKLPAYFLAV--YNPPSH 204

Query:   110 NENR-INKVLLWFD 122
                R IN++++ F+
Sbjct:   205 TTARVINEIMVPFN 218

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BFP1 HEBP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 108 (43.1 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 40/127 (31%), Positives = 60/127 (47%)

Query:     4 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHPIKLPKHKY 53
             L SY QG N++  KI MTAPV + + P  +GPF  S +          Q+ P +  +   
Sbjct:    69 LKSYLQGKNEKEMKIKMTAPVTSYVEPG-SGPFSESTITISLYIPSEQQSDPPRPAESDV 127

Query:    54 VVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLS-VAGYNSPFQNEN 112
              +  R    +   S    +SA K   +  T  S +    K+ D+ +   AGYNSPF+  +
Sbjct:   128 FIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREEGKVFDEKVYYTAGYNSPFKLLD 187

Query:   113 RINKVLL 119
             R N+V L
Sbjct:   188 RNNEVWL 194

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q9Y5Z4 HEBP2 "Heme-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 106 (42.4 bits), Expect = 7.9e-06, P = 7.9e-06
 Identities = 43/130 (33%), Positives = 62/130 (47%)

Query:     4 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPIKLPKHKYVVVRRFGGLM 63
             L SY QG N++  KI MTAPV + + P  +GPF  S +    + +P  +     R   L 
Sbjct:    69 LNSYIQGKNEKEMKIKMTAPVTSYVEPG-SGPFSESTITIS-LYIPSEQQFDPPR--PLE 124

Query:    64 DDTSISTQA--SALKKSF-------KNS----TWESAIIFNYKISDDHLS-VAGYNSPFQ 109
              D  I  +A  +   +SF       KN     T  S +  + K+ D+ +   AGYNSP +
Sbjct:   125 SDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVFDEKVYYTAGYNSPVK 184

Query:   110 NENRINKVLL 119
               NR N+V L
Sbjct:   185 LLNRNNEVWL 194

GO:0005739 "mitochondrion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1S6A9 HEBP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 106 (42.4 bits), Expect = 7.9e-06, P = 7.9e-06
 Identities = 39/127 (30%), Positives = 60/127 (47%)

Query:     4 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHPIKLPKHKY 53
             L SY QG N++  KI MTAPV + + P  +GPF  S +          Q+ P +  +   
Sbjct:    69 LNSYIQGKNEKEMKIKMTAPVTSYVEPG-SGPFSESTITISLYIPSEQQSDPPRPTESNV 127

Query:    54 VVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLS-VAGYNSPFQNEN 112
              +  R    +   S    +SA K   +  T  S +    K+ D+ +   AGY+SPF+  +
Sbjct:   128 FIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASVLREEGKVFDEKVYYTAGYSSPFELLD 187

Query:   113 RINKVLL 119
             R N+V L
Sbjct:   188 RNNEVWL 194

GO:0005737 "cytoplasm" evidence=IEA

TAIR|locus:2032065 AT1G78450 "AT1G78450" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 8.0e-06, P = 8.0e-06
 Identities = 35/133 (26%), Positives = 59/133 (44%)

Query:     4 LYSYFQGNNDQSAKITMTAPVLTNIIPSIN----GPFCNSQLQAHP-------IKLPKHK 52
             L  Y  GNND   +I +  P +T +  +++      F     Q  P       ++    +
Sbjct:    80 LSDYMNGNNDYHQRIEIALPYITQVSQNLSTFIVSFFVPKAFQPDPPPGNNLHVQRWDSR 139

Query:    53 YVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKI----SDDHLSVAGYNSPF 108
             YV V++  G + D  I  Q + LK S + + W  AI  + +     S    +VA ++ PF
Sbjct:   140 YVAVKQISGYVADHKIGKQVAELKASLQGTVWAKAIEKSRETGGVGSAWAYTVAQFSWPF 199

Query:   109 QNENRINKVLLWF 121
             Q   R+N++  WF
Sbjct:   200 QWSQRVNEI--WF 210

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

ZFIN|ZDB-GENE-040426-914 hebp2 "heme binding protein 2" [Danio rerio (taxid:7955)]

 Score = 101 (40.6 bits), Expect = 2.3e-05, P = 2.3e-05
 Identities = 42/137 (30%), Positives = 56/137 (40%)

Query:     2 RGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP------ 45
             R L+ Y QG+N++ +K+ MT PV   I P   GP C S            QA P      
Sbjct:    58 RRLFKYIQGSNEKKSKVEMTTPVSCLIDPGA-GPACESTFTVSFYIPEEHQADPPKPTDP 116

Query:    46 ---IKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVA 102
                I+  K     VR FGG  +  S   +   L +S K            K  +     A
Sbjct:   117 DVFIESRKELTAFVRTFGGFANSESCCEEILKLIESLKRD--------GMKFKEAPYYRA 168

Query:   103 GYNSPFQNENRINKVLL 119
             GY+SPF+   R N+V L
Sbjct:   169 GYDSPFKLTGRRNEVWL 185

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1BXL4 HEBP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 39/132 (29%), Positives = 57/132 (43%)

Query:     4 LYSYFQGNNDQSAKITMTAPVLTNIIPS------ING--PFCNSQLQAHP------IKLP 49
             L+ Y QG N++  KI MT PV T ++ S      I+   PF +      P      ++  
Sbjct:    36 LFHYIQGKNEKEIKIDMTVPV-TCLVKSGCADFKISFFVPFEHQDSPPQPTDSDVFVEER 94

Query:    50 KHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQ 109
             K   + VR F G       + +A AL K  +N              +D    AGY+SPF+
Sbjct:    95 KAAAIFVRSFSGFASPDKYAEEAEALAKLLRNR--------GQPFHEDFFYTAGYDSPFK 146

Query:   110 NENRINKVLLWF 121
               NR N+V  W+
Sbjct:   147 LFNRHNEV--WY 156

GO:0005737 "cytoplasm" evidence=IEA

RGD|1311553 Hebp2 "heme binding protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 100 (40.3 bits), Expect = 3.8e-05, P = 3.8e-05
 Identities = 38/131 (29%), Positives = 56/131 (42%)

Query:     4 LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL---------QAHPIKLPKHKYV 54
             L  Y QG N++  KI +TAPV++ + P  +GPF  S +         Q H    P    V
Sbjct:    67 LNGYIQGKNEKEMKIKLTAPVMSFVEPG-SGPFSESTITISLYIPSEQQHDPPRPSESDV 125

Query:    55 VVRRFGGL------MDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPF 108
              +   G +       D  S   +      +  N   E   +FN K+       AGY+SPF
Sbjct:   126 FIEDRGEMTVFVRSFDGFSSGQKNQEQLLTLANILREEGKVFNEKV----FYTAGYSSPF 181

Query:   109 QNENRINKVLL 119
             +  +R N+V L
Sbjct:   182 RLLDRNNEVWL 192


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      122       122   0.00091  102 3  11 22  0.37    31
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  590 (63 KB)
  Total size of DFA:  138 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.78u 0.10s 11.88t   Elapsed:  00:00:01
  Total cpu time:  11.78u 0.10s 11.88t   Elapsed:  00:00:01
  Start:  Sat May 11 06:58:36 2013   End:  Sat May 11 06:58:37 2013

GO:0005737 "cytoplasm" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006193001 SubName- Full=Chromosome chr1 scaffold_166, whole genome shotgun sequence; (218 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	122
pfam04832	174	pfam04832, SOUL, SOUL heme-binding protein	3e-15

>gnl|CDD|218284 pfam04832, SOUL, SOUL heme-binding protein

 Score = 67.3 bits (165), Expect = 3e-15
 Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 30/137 (21%)

Query: 4   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGP----------FCNSQLQAHPIKLPKH-- 51
           L  Y  G N    KI MTAPVL   IP                  S  QA  +  P    
Sbjct: 47  LAGYIFGKNRSGEKIAMTAPVLQQAIPMTADEEGSGAWTVSFVMPSGYQAETLPAPLDPD 106

Query: 52  --------KYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAG 103
                   + V V RF G   +  ++ +A+ L+   +    +               +AG
Sbjct: 107 VRIREVPARTVAVIRFSGRASEEDVAEKAAELRAWLEADGLKPR---------GEPFLAG 157

Query: 104 YNSPF-QNENRINKVLL 119
           YN P+     R N+V +
Sbjct: 158 YNPPWTPPFLRRNEVWV 174

This family represents a group of putative heme-binding proteins. Our family includes archaeal and bacterial homologues. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
PF04832	176	SOUL: SOUL heme-binding protein; InterPro: IPR0069	100.0
COG3449	154	DNA gyrase inhibitor [DNA replication, recombinati	93.65
PRK10016	156	DNA gyrase inhibitor; Provisional	93.64
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	92.89
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	89.95
PRK10016	156	DNA gyrase inhibitor; Provisional	86.6

>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []

Probab=100.00  E-value=2.3e-36  Score=221.45  Aligned_cols=112  Identities=35%  Similarity=0.567  Sum_probs=84.5

Q ss_pred             ChhhhccccCCCCCCCccCcCcceeEEeecCCC----C----Ccccc------------CCceeEEeCCCCcEEEEEEec
Q 036254            1 MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSIN----G----PFCNS------------QLQAHPIKLPKHKYVVVRRFG   60 (122)
Q Consensus         1 F~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~----~----~f~~~------------~~~V~i~~~p~~~~v~V~~F~   60 (122)
                      |++|++||+|+|+++.||+||+||++++.+...    +    .|.+|            .++|+|+++| ++++||++|+
T Consensus        44 f~~L~~Yi~G~N~~~~ki~mT~PV~~~~~~~~~~~~~~~~t~~f~lP~~~~~~~~P~P~d~~V~i~~~p-~~~~~v~~F~  122 (176)
T PF04832_consen   44 FRRLFRYIFGKNSAGEKIAMTAPVLTQVIPMTAESCEKEYTMSFFLPSEYQAENPPKPTDPDVFIEEVP-ERTVYVRRFS  122 (176)
T ss_dssp             HHHHHHHHCT-CTT------BS-EEEEEEETTTTTCECEEEEEEE--HHHC-TS---BSSTTEEEEEC--SEEEEEEEEC
T ss_pred             HHHHHHHHhcCCcccceeeccCCEEEEEEcCCCcccCCcEEEEEEcCcccccccCCCCCCCeEEEEEec-CcEEEEEEEC
Confidence            789999999999999999999999999954311    1    23232            1899999999 9999999999


Q ss_pred             cccChhHHHHHHHHHHHHhhcCCCchheeccccccCCceEEEEeCCCCCCC-CCeeeEEEEeC
Q 036254           61 GLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQNE-NRINKVLLWFD  122 (122)
Q Consensus        61 G~~~~~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd~P~~~~-~R~NEVwi~~~  122 (122)
                      |++++..+.+++++|+++|+++|+.         +.+.+++|+||+||+++ +|||||||.++
T Consensus       123 G~~~~~~~~~~~~~L~~~L~~~g~~---------~~~~~~~a~Yd~P~~~~~~R~NEV~i~v~  176 (176)
T PF04832_consen  123 GFATDEKIQEEAKKLRAALKKDGLK---------DKGYYYVAGYDPPFTPPFNRRNEVWIPVK  176 (176)
T ss_dssp             S--SHHHHHHHHHHHHHHCCCTTHH---------CCCEEEEEESSSS-SSSSSSCEEEEEE--
T ss_pred             CcCCHHHHHHHHHHHHHHHHHcCCC---------cCCCeEEEEcCCCCCCccCcceEEEEecC
Confidence            9999999999999999999999854         57899999999996665 99999999985

It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.

>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]

Probab=93.65  E-value=0.44  Score=34.63  Aligned_cols=57  Identities=16%  Similarity=0.100  Sum_probs=47.0

Q ss_pred             CceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHHHHhhcCCCchheeccccccCCceEEEEeCCCC
Q 036254           41 LQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPF  108 (122)
Q Consensus        41 ~~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd~P~  108 (122)
                      .+|.|+++| +..||..+=-|  ......+-.++|.+|.+++|+..        ..+..+.-.||+|=
T Consensus         1 mdv~I~e~p-~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~p--------~~S~~~gI~~ddP~   57 (154)
T COG3449           1 MDVEIIELP-PIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLLP--------EQSETLGIYQDDPD   57 (154)
T ss_pred             CCceEEecC-CceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCCC--------CCceEEEEecCCCC
Confidence            379999999 99999999999  77788999999999999998642        24666666778885

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=93.64  E-value=0.7  Score=32.49  Aligned_cols=54  Identities=7%  Similarity=0.056  Sum_probs=43.3

Q ss_pred             ceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHHHHhhcCCCchheeccccccCCceEEEEeCCC
Q 036254           42 QAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSP  107 (122)
Q Consensus        42 ~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd~P  107 (122)
                      +|.|+++| +..|+..+..|...+ ...+.-.+|.+++.++|+.         .. .++.-.||.|
T Consensus         2 ~v~i~~~~-~~~va~ir~~g~~~~-~~~~~~~~L~~~~~~~~l~---------~~-~~~~i~~D~p   55 (156)
T PRK10016          2 NYEIKQEQ-KRTIAGFHLVGPWEQ-TVKQGFEQLMMWVDSHNIV---------PK-EWVAVYYDNP   55 (156)
T ss_pred             ceEEEEcc-CceEEEEEeecCchh-HHHHHHHHHHHHHHHcCCC---------CC-cEEEEECCCC
Confidence            68999999 999999999996643 3677889999999999853         12 3666788998

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=92.89  E-value=0.33  Score=32.53  Aligned_cols=70  Identities=14%  Similarity=0.090  Sum_probs=52.9

Q ss_pred             ceeEEeCCCCcEEEEEEeccccChhH-HHHHHHHHHHHhhcCCCchheeccccccCCceEEEEeCCCCCCCCCeeeEEEE
Q 036254           42 QAHPIKLPKHKYVVVRRFGGLMDDTS-ISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQNENRINKVLLW  120 (122)
Q Consensus        42 ~V~i~~~p~~~~v~V~~F~G~~~~~~-~~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVwi~  120 (122)
                      +|.|+++| +++++..+..|-..+.. +.+..++|.+.+...+..        .....++..-||.|.........+++.
T Consensus         2 ~~~i~~~p-~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~--------~~~~~~~~i~~~~~~~~~~~~~~~~~~   72 (155)
T PF06445_consen    2 EVEIVTLP-AFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLS--------TDPGPIIGIYYDNPNITDDEEFRYDIG   72 (155)
T ss_dssp             CEEEEEEE-EEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHC--------CSSSSEEEEEEECCTSSTGCEEEEEEE
T ss_pred             CcEEEEEC-CEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhcc--------cCCCcceeEEeccccccCCcceEEEEE
Confidence            68999999 99999999999888777 888899999999887632        135566667777776544555555543

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=89.95  E-value=3.8  Score=27.21  Aligned_cols=69  Identities=16%  Similarity=0.176  Sum_probs=50.4

Q ss_pred             CceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHHH-HhhcCCCchheeccccccCCceEEEEe-CCCC-CCCCCeeeE
Q 036254           41 LQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKK-SFKNSTWESAIIFNYKISDDHLSVAGY-NSPF-QNENRINKV  117 (122)
Q Consensus        41 ~~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~-~L~~~g~~~~i~~~~~~~~~~~~~A~Y-d~P~-~~~~R~NEV  117 (122)
                      .++....+| +..+++..|.|-.  +.+.+-...|.. +|.++|+.         ....+.+-.| +.|. ....-.=||
T Consensus        83 ~~~~~~~ip-~g~ya~~~~~G~~--~~l~~~~~~l~~~~l~~~g~~---------~~~~~~~E~y~~~~~~~~~~~~~ei  150 (155)
T PF06445_consen   83 DGMESRTIP-AGKYAVFEHKGPY--DDLQEAYQKLYNEWLPESGYE---------RRDGPDFEIYLNDPDTDEEEYVTEI  150 (155)
T ss_dssp             TTSEEEEEE-CEEEEEEEEESCG--HGHHHHHHHHHHCHHHHCTCE---------EESSEEEEEEESSTTTTSCGEEEEE
T ss_pred             ceEEEEEEc-CcEEEEEEEEccH--HHHHHHHHHHHhhhHHHCCCc---------cCCCCcEEEECCCCCCCCCceEEEE
Confidence            789999999 9999999999977  667888899999 99999963         1222233333 3444 323566688


Q ss_pred             EEEe
Q 036254          118 LLWF  121 (122)
Q Consensus       118 wi~~  121 (122)
                      ||+|
T Consensus       151 ~iPi  154 (155)
T PF06445_consen  151 YIPI  154 (155)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9886

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=86.60  E-value=8.4  Score=26.91  Aligned_cols=69  Identities=7%  Similarity=0.009  Sum_probs=45.6

Q ss_pred             ceeEEeCCCCcEEEEEEeccccChhHHHHHHHH-HHHHhhcCCCchheeccccccCCceEEEEeC-CCCCCCCCeeeEEE
Q 036254           42 QAHPIKLPKHKYVVVRRFGGLMDDTSISTQASA-LKKSFKNSTWESAIIFNYKISDDHLSVAGYN-SPFQNENRINKVLL  119 (122)
Q Consensus        42 ~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~-L~~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd-~P~~~~~R~NEVwi  119 (122)
                      .+.+.++| +..+||..+.|.  -+.+.+--.. +.++|..+|+..         .+...+-.|. .|.....-.=|||+
T Consensus        83 ~~~~~~ip-~g~yAv~~~~G~--~~~l~~~~~~i~~~Wl~~sgy~~---------~~~p~~E~Y~~~~~~~~~~~tei~i  150 (156)
T PRK10016         83 GVILTEIP-GGQYAVAVARVV--DDDFAKPWYQFFNSLLQDSAYQM---------APKPCFEVYLNDGAEDGYWDIEMYV  150 (156)
T ss_pred             CeEEEEEC-CCcEEEEEEECC--HHHHHHHHHHHHHHhchhcCCcc---------CCCCCEEEeCCCCCCCCcEEEEEEE
Confidence            68999999 999999999995  3345555555 778999998652         1123333454 34332232459999


Q ss_pred             EeC
Q 036254          120 WFD  122 (122)
Q Consensus       120 ~~~  122 (122)
                      ++.
T Consensus       151 PI~  153 (156)
T PRK10016        151 PVQ  153 (156)
T ss_pred             EeE
Confidence            873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	122
4b0y_A	227	Determination Of X-Ray Structure Of Human Soul By M		2e-05
3r8j_A	212	Crystal Structure Of Human Soul Protein (Orthorhomb		2e-05

>pdb|4B0Y|A Chain A, Determination Of X-Ray Structure Of Human Soul By Molecular Replacement Length = 227

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 60/136 (44%), Gaps = 30/136 (22%)
Query: 4   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------- 45
           L SY QG N++  KI MTAPV + + P  +GPF  S +          Q  P        
Sbjct: 91  LNSYIQGKNEKEMKIKMTAPVTSYVEPG-SGPFSESTITISLYIPSEQQFDPPRPLESDV 149
Query: 46  -IKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHL-SVAG 103
            I+      V VR F G          +SA K   +  T  S +  + K+ D+ +   AG
Sbjct: 150 FIEDRAEMTVFVRSFDGF---------SSAQKNQEQLLTLASILREDGKVFDEKVYYTAG 200
Query: 104 YNSPFQNENRINKVLL 119
           YNSP +  NR N+V L
Sbjct: 201 YNSPVKLLNRNNEVWL 216

>pdb|3R8J|A Chain A, Crystal Structure Of Human Soul Protein (Orthorhombic Form) Length = 212

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 60/136 (44%), Gaps = 30/136 (22%)
Query: 4   LYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL----------QAHP-------- 45
           L SY QG N++  KI MTAPV + + P  +GPF  S +          Q  P        
Sbjct: 72  LNSYIQGKNEKEMKIKMTAPVTSYVEPG-SGPFSESTITISLYIPSEQQFDPPRPLESDV 130
Query: 46  -IKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHL-SVAG 103
            I+      V VR F G          +SA K   +  T  S +  + K+ D+ +   AG
Sbjct: 131 FIEDRAEMTVFVRSFDGF---------SSAQKNQEQLLTLASILREDGKVFDEKVYYTAG 181
Query: 104 YNSPFQNENRINKVLL 119
           YNSP +  NR N+V L
Sbjct: 182 YNSPVKLLNRNNEVWL 197

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	2e-10
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	6e-09
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	1e-07

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A Length = 195

 Score = 54.9 bits (131), Expect = 2e-10
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 26/137 (18%)

Query: 1   MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCN------------------SQLQ 42
           M  +  Y  G ND+   + MT PV   + P+ +G                         +
Sbjct: 64  MPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDE 123

Query: 43  AHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVA 102
           +  I+  +   V   +FGG   +      A+ L+ + + +              D    A
Sbjct: 124 SVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGT--------PATYQGDVYYCA 175

Query: 103 GYNSPFQNENRINKVLL 119
           GY+ P +   R N+V L
Sbjct: 176 GYDPPMKPYGRRNEVWL 192

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 3r85_E Length = 212

 Score = 50.7 bits (120), Expect = 6e-09
 Identities = 33/138 (23%), Positives = 45/138 (32%), Gaps = 26/138 (18%)

Query: 1   MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPI-------------- 46
              L SY QG N++  KI MTAPV + + P       ++   +  I              
Sbjct: 69  FTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLES 128

Query: 47  ----KLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVA 102
               +      V VR F G         Q   L    +               +     A
Sbjct: 129 DVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILRED--------GKVFDEKVYYTA 180

Query: 103 GYNSPFQNENRINKVLLW 120
           GYNSP +  NR N+V L 
Sbjct: 181 GYNSPVKLLNRNNEVWLI 198

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens} Length = 227

 Score = 47.6 bits (112), Expect = 1e-07
 Identities = 33/138 (23%), Positives = 45/138 (32%), Gaps = 26/138 (18%)

Query: 1   MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQLQAHPI-------------- 46
              L SY QG N++  KI MTAPV + + P       ++   +  I              
Sbjct: 88  FTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPLES 147

Query: 47  ----KLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVA 102
               +      V VR F G         Q   L    +               +     A
Sbjct: 148 DVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILRED--------GKVFDEKVYYTA 199

Query: 103 GYNSPFQNENRINKVLLW 120
           GYNSP +  NR N+V L 
Sbjct: 200 GYNSPVKLLNRNNEVWLI 217

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	100.0
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	100.0
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	100.0
3e0h_A	158	Uncharacterized protein; chlorobium tepidum, struc	96.57
1jyh_A	157	DNA gyrase inhibitory protein; structural genomics	96.21
3lur_A	158	Putative bacterial transcription regulation prote;	92.42
1d5y_A	292	ROB transcription factor; protein-DNA complex, DNA	89.43
3gk6_A	170	Integron cassette protein VCH_CASS2; novel, oyster	86.66
3b49_A	211	LIN2189 protein; BIG 860.1, structural genomics, M	86.66
1r8e_A	278	Multidrug-efflux transporter regulator; protein-DN	85.31
3e0h_A	158	Uncharacterized protein; chlorobium tepidum, struc	83.25
3b49_A	211	LIN2189 protein; BIG 860.1, structural genomics, M	81.31

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E

Probab=100.00  E-value=3.4e-39  Score=242.53  Aligned_cols=112  Identities=31%  Similarity=0.423  Sum_probs=100.9

Q ss_pred             ChhhhccccCCCCCCCccCcCcceeEEeecCCCCCc---------ccc-----------CCceeEEeCCCCcEEEEEEec
Q 036254            1 MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPF---------CNS-----------QLQAHPIKLPKHKYVVVRRFG   60 (122)
Q Consensus         1 F~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~f---------~~~-----------~~~V~i~~~p~~~~v~V~~F~   60 (122)
                      |++|++||+|+|.++.||+||+||++++.++ ++++         .+|           .++|+|+++| +++|||++|+
T Consensus        69 F~~L~~YI~G~N~~~~kI~MTaPV~t~~~p~-~~~~~~~~~tvsF~lP~~~q~~pP~P~d~~V~i~~~p-~~~vav~~F~  146 (212)
T 3r8j_A           69 FTKLNSYIQGKNEKEMKIKMTAPVTSYVEPG-SGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRA-EMTVFVRSFD  146 (212)
T ss_dssp             HHHHHHHHTTCBTTCCCCCCBSCEEEEEECT-TSTTSCEEEEEEEECCHHHHSSCCCBSSTTEEEEEEC-CEEEEEEEES
T ss_pred             HHHHHHHhhcCCCCCCccccccCEEEEEecC-CCcccCceEEEEEEcChHHccCCCCCCCCceEEEEeC-CEEEEEEEeC
Confidence            8999999999999999999999999999776 4433         222           1799999999 9999999999


Q ss_pred             cccChhHHHHHHHHHHHHhhcCCCchheeccccccCCceEEEEeCCCCCCCCCeeeEEEEeC
Q 036254           61 GLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQNENRINKVLLWFD  122 (122)
Q Consensus        61 G~~~~~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVwi~~~  122 (122)
                      |++++.++.+++++|+++|+++|+.        +..+.|++|+|||||++++|||||||.++
T Consensus       147 G~~~~~~~~~~~~~L~~~L~~~g~~--------~~~~~y~~A~Yd~P~t~~~RrNEVwi~~~  200 (212)
T 3r8j_A          147 GFSSAQKNQEQLLTLASILREDGKV--------FDEKVYYTAGYNSPVKLLNRNNEVWLIQK  200 (212)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTTCC--------BCSSCEEEEESSSSSCCSSSCEEEEEEBC
T ss_pred             CcCCHHHHHHHHHHHHHHHHhCCCc--------cCCCcEEEEEeCCCCCcCCceeEEEEEeC
Confidence            9999999999999999999999865        56778999999999998899999999864

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}

Probab=100.00  E-value=5.9e-39  Score=243.32  Aligned_cols=112  Identities=30%  Similarity=0.403  Sum_probs=97.0

Q ss_pred             ChhhhccccCCCCCCCccCcCcceeEEeecCCCCC---------ccccC-----------CceeEEeCCCCcEEEEEEec
Q 036254            1 MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGP---------FCNSQ-----------LQAHPIKLPKHKYVVVRRFG   60 (122)
Q Consensus         1 F~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~---------f~~~~-----------~~V~i~~~p~~~~v~V~~F~   60 (122)
                      |++|++||+|+|.++.||+||+||++++.++ +++         |.+|.           ++|+|+++| +++||||+|+
T Consensus        88 F~~L~~YI~G~N~~~~kI~MTaPV~t~~~p~-~~~~~~~~~tvsF~lP~~~q~~pP~P~D~~V~i~~~p-~~~vaVr~Fs  165 (227)
T 4b0y_A           88 FTKLNSYIQGKNEKEMKIKMTAPVTSYVEPG-SGPFSESTITISLYIPSEQQFDPPRPLESDVFIEDRA-EMTVFVRSFD  165 (227)
T ss_dssp             HHHHHHHHHTCBTTCCCCCCBSCEEEEEECC-C--CCCEEEEEEEECCGGGSSSCCCBSSSSEEEEEEC-CEEEEEEEES
T ss_pred             HHHHHHHhhcCCCCCCccccccCEEEEEecC-CCcccCceEEEEEEcChhhccCCCCCCCCceEEEEeC-CEEEEEEEec
Confidence            8999999999999999999999999998776 433         22221           799999999 9999999999


Q ss_pred             cccChhHHHHHHHHHHHHhhcCCCchheeccccccCCceEEEEeCCCCCCCCCeeeEEEEeC
Q 036254           61 GLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQNENRINKVLLWFD  122 (122)
Q Consensus        61 G~~~~~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVwi~~~  122 (122)
                      |++++.++.+++++|+++|+++|+.        +..+.|++|+|||||++++|||||||.+.
T Consensus       166 G~~~~~~~~~~~~~L~~~L~~~g~~--------~~~~~y~~A~Yd~P~t~~~RrNEVwi~~~  219 (227)
T 4b0y_A          166 GFSSAQKNQEQLLTLASILREDGKV--------FDEKVYYTAGYNSPVKLLNRNNEVWLIQK  219 (227)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHTCC--------BCSSCEEEEECC---CCCSSCEEEEEEBC
T ss_pred             CcCCHHHHHHHHHHHHHHHHhCCCc--------cCCCcEEEEEeCCCCCcCCceeEEEEEEC
Confidence            9999999999999999999999865        56778999999999998899999999863

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A

Probab=100.00  E-value=1.3e-38  Score=236.46  Aligned_cols=111  Identities=23%  Similarity=0.331  Sum_probs=99.7

Q ss_pred             ChhhhccccCCCCCCCccCcCcceeEEeecCCCCCc---------cccC-----------CceeEEeCCCCcEEEEEEec
Q 036254            1 MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPF---------CNSQ-----------LQAHPIKLPKHKYVVVRRFG   60 (122)
Q Consensus         1 F~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~f---------~~~~-----------~~V~i~~~p~~~~v~V~~F~   60 (122)
                      |++|++||+|+|..+.||+||+||++++.++ ++++         .+|.           ++|+|+++| +++|||++|+
T Consensus        64 F~~L~~YI~G~N~~~~kI~MTaPV~~~~~p~-~~~~~~~~~tvsF~lP~~~~~~pP~P~d~~V~i~~~p-~~~vav~~F~  141 (195)
T 2gov_A           64 MPKIMKYVGGTNDKGVGMGMTVPVSFAVFPN-EDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEERE-GITVYSTQFG  141 (195)
T ss_dssp             HHHHHHHHHTCBTTCCCCCCCCCEEEEEEEC-TTSCEEEEEEEEECCCHHHHHSCCCBCSSSCEEEECC-SCEEEEEEEE
T ss_pred             HHHHHHHhccCCCCCCCcccccCEEEEEcCC-CCCCcCceEEEEEEcchhcccCCCCCCCCceEEEEeC-CeEEEEEEEC
Confidence            8999999999999999999999999998776 4433         2331           799999999 9999999999


Q ss_pred             cccChhHHHHHHHHHHHHhhcCCCchheeccccccCCceEEEEeCCCCCCCCCeeeEEEEe
Q 036254           61 GLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQNENRINKVLLWF  121 (122)
Q Consensus        61 G~~~~~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVwi~~  121 (122)
                      |++++..+.+++++|+++|+++|+.        +..+.|++|+|||||++++|||||||..
T Consensus       142 G~~~~~~~~~~~~~L~~~L~~~g~~--------~~~~~~~~a~Yn~P~~~~~RrNEV~i~~  194 (195)
T 2gov_A          142 GYAKEADYVAHATQLRTTLEGTPAT--------YQGDVYYCAGYDPPMKPYGRRNEVWLVK  194 (195)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTTSSCC--------EEEEEEEEEESSCCSSSSCCEEEEEEEE
T ss_pred             CccCHHHHHHHHHHHHHHHHHCCCc--------ccCCcEEEEEeCCCCCcCCceeEEEEEe
Confidence            9999999999999999999999854        4567799999999999999999999975

>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A

Probab=96.57  E-value=0.012  Score=40.01  Aligned_cols=69  Identities=14%  Similarity=0.096  Sum_probs=52.4

Q ss_pred             CceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHHHHhhcCCCchheeccccccCCceEEEE-eCCCCC-CC-CCeeeE
Q 036254           41 LQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAG-YNSPFQ-NE-NRINKV  117 (122)
Q Consensus        41 ~~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~-Yd~P~~-~~-~R~NEV  117 (122)
                      .+|.+.++| +.++++.++.|-..+  +.+--++|.++|.++|+..        . + ..+-. +|.|.. .. ..+.||
T Consensus        85 ~~~~~~~ip-~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~~--------~-~-~~~E~Y~~~p~~~~~~~~~tei  151 (158)
T 3e0h_A           85 GRVVTGLTP-SGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFDL--------S-G-EAYEIYLDNPAETAPDQLRTRV  151 (158)
T ss_dssp             TTBEEEECC-CEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCCE--------E-E-EEEEEECSCTTSSCGGGCEEEE
T ss_pred             CceEEEEeC-CEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCCc--------C-C-CEEEEEeCCCCCCCHHHhEEEE
Confidence            579999999 999999999996553  6778888999999998652        1 2 23334 467764 33 779999


Q ss_pred             EEEeC
Q 036254          118 LLWFD  122 (122)
Q Consensus       118 wi~~~  122 (122)
                      |++|.
T Consensus       152 ~ipv~  156 (158)
T 3e0h_A          152 SLMLH  156 (158)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            99874

>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3

Probab=96.21  E-value=0.0053  Score=40.32  Aligned_cols=69  Identities=7%  Similarity=-0.082  Sum_probs=49.2

Q ss_pred             CceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHH-HHhhcCCCchheeccccccCCceEEEEeC-CCCCCCCCeeeEE
Q 036254           41 LQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALK-KSFKNSTWESAIIFNYKISDDHLSVAGYN-SPFQNENRINKVL  118 (122)
Q Consensus        41 ~~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd-~P~~~~~R~NEVw  118 (122)
                      ..+.+.++| +.+.+|..|.|...  .+.+--.+|. ++|.++|+.         ..+.+.+-.|. .|..+...+.|||
T Consensus        82 ~~~~~~~ip-~g~ya~~~~~G~~~--~~~~~~~~l~~~wl~~~g~~---------~~~~~~~E~Y~~~~~~~~~~~tei~  149 (157)
T 1jyh_A           82 EGVILTEIT-GGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYE---------MLPKPCFEVYLNNGAEDGYWDIEMY  149 (157)
T ss_dssp             TTCEEEEEC-CEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEE---------ECSSCEEEEECSCHHHHSSEEEEEE
T ss_pred             CCeEEEEeC-CCcEEEEEEEeCHH--HHHHHHHHHHHHhhcccCCc---------cCCCceEEEecCCCCCcccEEEEEE
Confidence            468889999 99999999999763  3556677775 999998854         13335566773 2223335677999


Q ss_pred             EEe
Q 036254          119 LWF  121 (122)
Q Consensus       119 i~~  121 (122)
                      |+|
T Consensus       150 ipi  152 (157)
T 1jyh_A          150 VAV  152 (157)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            987

>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}

Probab=92.42  E-value=1.7  Score=29.33  Aligned_cols=71  Identities=10%  Similarity=0.051  Sum_probs=49.0

Q ss_pred             CceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHH-HHhhcCCCchheeccccccCCceEEEEeCCCCCC-CCCeeeEE
Q 036254           41 LQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALK-KSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQN-ENRINKVL  118 (122)
Q Consensus        41 ~~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd~P~~~-~~R~NEVw  118 (122)
                      ..+...++| +.+.||-++.|-..+. +.+--+.+. ++|-..|..         ....+-+-.|+.+-.. ..-.-|||
T Consensus        85 ~~~~~~~ip-~g~Yavf~~~G~~~~~-i~~~~~~i~~~wlp~sgy~---------~~~~p~fE~Y~~~~~~~~~~~~ei~  153 (158)
T 3lur_A           85 AKYDVITLA-SSKYMVFEAQGAVPKA-VQQKMEEVHHYIHQYQANT---------VKSAPFFELYQDGDTTSEKYITEIW  153 (158)
T ss_dssp             GGSEEEEEC-CEEEEEEEEESSTTHH-HHHHHHHHHHHHHHHCTTT---------BCSSCEEEEECSSCTTSTTCEEEEE
T ss_pred             CCcEEEEEC-CceEEEEEEecChHHH-HHHHHHHHHHhhcccCCCe---------eCCCccEEEECCCCCCCcceEEEEE
Confidence            468889999 9999999999975543 445555554 589888764         2334566678764322 25567999


Q ss_pred             EEeC
Q 036254          119 LWFD  122 (122)
Q Consensus       119 i~~~  122 (122)
                      |+|.
T Consensus       154 iPI~  157 (158)
T 3lur_A          154 MPVK  157 (158)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9974

>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2

Probab=89.43  E-value=1.7  Score=31.82  Aligned_cols=69  Identities=16%  Similarity=0.197  Sum_probs=46.5

Q ss_pred             CceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHH-HHhhcCCCchheeccccccCCceEEEEeC----CCCCCC--CC
Q 036254           41 LQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALK-KSFKNSTWESAIIFNYKISDDHLSVAGYN----SPFQNE--NR  113 (122)
Q Consensus        41 ~~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd----~P~~~~--~R  113 (122)
                      ..+...++| +.+.||.++.|-  .+.+.+--..|. +||.+.|...         .+.+-+-.|.    +|....  .=
T Consensus       210 ~~~~~~~iP-~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy~~---------~~~p~~E~Y~~~~~~~~~~~~~~~  277 (292)
T 1d5y_A          210 LTGHPVMLQ-GGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNLTR---------RKGQDIERYYPAEDAKAGDRPINL  277 (292)
T ss_dssp             TTCEEEEEC-CEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTCEE---------CSSCEEEEECGGGC----CCSCEE
T ss_pred             CcceEEEEC-CCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCCcc---------CCCCcEEEEeeccccCCCCCCCce
Confidence            468889999 999999999994  456777788886 8999988641         2233445665    332222  22


Q ss_pred             eeeEEEEe
Q 036254          114 INKVLLWF  121 (122)
Q Consensus       114 ~NEVwi~~  121 (122)
                      .-||||+|
T Consensus       278 ~tEI~iPI  285 (292)
T 1d5y_A          278 RCELLIPI  285 (292)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            45999987

>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}

Probab=86.66  E-value=6  Score=27.18  Aligned_cols=66  Identities=11%  Similarity=0.015  Sum_probs=46.2

Q ss_pred             CceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHHHHhhcCC--CchheeccccccCCceEEEEeCCCCCCCCCeeeEE
Q 036254           41 LQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNST--WESAIIFNYKISDDHLSVAGYNSPFQNENRINKVL  118 (122)
Q Consensus        41 ~~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~~L~~~g--~~~~i~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVw  118 (122)
                      ..+...++| +.+.||-++.|-..+ .+.+--+.+..+|-..|  ..         ....+-+-.|+..-     .-|||
T Consensus       103 ~g~~~~~IP-~g~YAVF~~~G~~p~-~i~~~w~~I~~WlP~sg~~y~---------~~~~pdfE~Y~~~~-----~~eI~  166 (170)
T 3gk6_A          103 SESVKTKVS-SGKYVTFSATGEMPQ-VVIDLWNEVWNYFASEHCPHK---------RAYTTDFEYYKSAN-----TVEIS  166 (170)
T ss_dssp             TTCEEEEEC-CEEEEEEEEESSTTH-HHHHHHHHHHHHHC---CCCC---------BCCSEEEEECCSSS-----EEEEE
T ss_pred             CCcEEEEEC-CCCEEEEEecCCCHH-HHHHHHHHHHHhhhhcCCcce---------ecCcCCEEEECCCC-----eEEEE
Confidence            468899999 999999999995544 56666677777998887  54         23455666786541     77999


Q ss_pred             EEeC
Q 036254          119 LWFD  122 (122)
Q Consensus       119 i~~~  122 (122)
                      |+|.
T Consensus       167 IpI~  170 (170)
T 3gk6_A          167 IAVR  170 (170)
T ss_dssp             EEBC
T ss_pred             EEEC
Confidence            9874

>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}

Probab=86.66  E-value=2.7  Score=29.82  Aligned_cols=71  Identities=8%  Similarity=0.036  Sum_probs=49.1

Q ss_pred             CceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHHHHhhcCCCchheeccccccC--CceEEEEe-CCCCC-CC-CCee
Q 036254           41 LQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISD--DHLSVAGY-NSPFQ-NE-NRIN  115 (122)
Q Consensus        41 ~~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~--~~~~~A~Y-d~P~~-~~-~R~N  115 (122)
                      ..|.+.++| +..+++.++-|-..  ...+-..+|.++|.++|+..        ..  +...+-.| +.|.. .. .-+=
T Consensus       136 ~~v~~~~ip-~g~~a~~~h~G~y~--~~~~~~~~l~~wl~~~g~~~--------~~~~~~~~~EiY~~dp~~~~~~~~~t  204 (211)
T 3b49_A          136 SRVKLVRFE-EGECVQMMHVGPFS--EEVHTVAEMHQFMETEGLRN--------DTGAIRKHHEIYLSDPRKANPEKMKT  204 (211)
T ss_dssp             TTCEEEEEE-EEEEEEEEEESCGG--GHHHHHHHHHHHHHHHTCCB--------CBTTTBCEEEEECSCTTTSCGGGCEE
T ss_pred             ccceEEEeC-CceEEEEEEEcchh--hHHHHHHHHHHHHHHCCCcc--------ccCCCCcEEEEEeCCCCCCChHHeEE
Confidence            469999999 99999999998655  35567788889999998621        11  13344455 56653 33 4467


Q ss_pred             eEEEEeC
Q 036254          116 KVLLWFD  122 (122)
Q Consensus       116 EVwi~~~  122 (122)
                      |||++|.
T Consensus       205 ei~ipV~  211 (211)
T 3b49_A          205 ILRLPVS  211 (211)
T ss_dssp             EEEEEBC
T ss_pred             EEEEEeC
Confidence            8998873

>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*

Probab=85.31  E-value=3.9  Score=29.88  Aligned_cols=69  Identities=4%  Similarity=-0.072  Sum_probs=46.9

Q ss_pred             ceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHHHHhhcCCCchheeccccccCCceEEEEeCCCCCC--C-CCeeeEE
Q 036254           42 QAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQN--E-NRINKVL  118 (122)
Q Consensus        42 ~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd~P~~~--~-~R~NEVw  118 (122)
                      .+.+.++| +..+++..+.|-.  +.+.+-...|.++|.++|+..         .+..+---++.|+..  + .-.-|||
T Consensus       206 ~~~~~~lp-~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~~---------~g~~~E~y~~~~~~~~~~~~~~teI~  273 (278)
T 1r8e_A          206 DMEITTIP-KGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLTV---------VSDVYELIIPIHYSPKKQEEYRVEMK  273 (278)
T ss_dssp             TSEEEEEC-SEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCCE---------EEEEEEEEEESCCCSSSCCCEEEEEE
T ss_pred             CceEeecC-CceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCcc---------CCCeEEEEeecccccCChhheEEEEE
Confidence            47888999 9899999999954  345667788889999998652         222222223355542  2 4467999


Q ss_pred             EEeC
Q 036254          119 LWFD  122 (122)
Q Consensus       119 i~~~  122 (122)
                      ++|.
T Consensus       274 iPv~  277 (278)
T 1r8e_A          274 IRIA  277 (278)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9874

>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A

Probab=83.25  E-value=7.7  Score=25.56  Aligned_cols=43  Identities=7%  Similarity=-0.014  Sum_probs=32.2

Q ss_pred             ceeEEeCCCCcEEEEEEeccccCh--hHHHHHHHHHHHHhhcCCCc
Q 036254           42 QAHPIKLPKHKYVVVRRFGGLMDD--TSISTQASALKKSFKNSTWE   85 (122)
Q Consensus        42 ~V~i~~~p~~~~v~V~~F~G~~~~--~~~~~~~~~L~~~L~~~g~~   85 (122)
                      +|+|+++| +.+|+..+..|...+  ..+.+--++|.+++..+|+.
T Consensus         8 ~v~I~~~p-~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~~~~l~   52 (158)
T 3e0h_A            8 VCELKELA-PVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGKS   52 (158)
T ss_dssp             CEEEEEEC-CCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ccEEEeeC-CceEEEEEeecCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            68999999 999999999987422  12335566788888888753

>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}

Probab=81.31  E-value=4.7  Score=28.57  Aligned_cols=45  Identities=13%  Similarity=0.037  Sum_probs=37.3

Q ss_pred             CCceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHHHHh------hcCCCc
Q 036254           40 QLQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSF------KNSTWE   85 (122)
Q Consensus        40 ~~~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~~L------~~~g~~   85 (122)
                      ..+|.|.++| +..++..+..|-+.+..+.+...+|..++      .+.|+.
T Consensus        22 ~~~v~i~~~p-~~~v~~i~~~g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~~   72 (211)
T 3b49_A           22 KRKPERIFVP-EMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSKMGETR   72 (211)
T ss_dssp             CSSCEEEEEE-EEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHGGGSCCT
T ss_pred             CCCcEEEEEC-CeeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3579999999 99999999888766557788889999998      887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	122
d2gova1	184	d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (	1e-13

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 184

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.7 bits (149), Expect = 1e-13
 Identities = 27/138 (19%), Positives = 43/138 (31%), Gaps = 28/138 (20%)

Query: 1   MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSINGPFCNSQL-------QAHPIKLPK--- 50
           M  +  Y  G ND+   + MT PV   + P+        +L              P    
Sbjct: 53  MPKIMKYVGGTNDKGVGMGMTVPVSFAVFPN-EDGSLQKKLKVWFRIPNQFQGSPPAPSD 111

Query: 51  ---------HKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSV 101
                       V   +FGG   +      A+ L+ + + +              D    
Sbjct: 112 ESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGT--------PATYQGDVYYC 163

Query: 102 AGYNSPFQNENRINKVLL 119
           AGY+ P +   R N+V L
Sbjct: 164 AGYDPPMKPYGRRNEVWL 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d2gova1	184	Heme-binding protein 1 {Mouse (Mus musculus) [TaxI	100.0
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	88.63
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	88.28
d1r8ea2	157	Multidrug-binding domain of transcription activato	80.98

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-38  Score=231.15  Aligned_cols=112  Identities=24%  Similarity=0.363  Sum_probs=99.1

Q ss_pred             ChhhhccccCCCCCCCccCcCcceeEEeecCCCC--------Ccccc-----------CCceeEEeCCCCcEEEEEEecc
Q 036254            1 MRGLYSYFQGNNDQSAKITMTAPVLTNIIPSING--------PFCNS-----------QLQAHPIKLPKHKYVVVRRFGG   61 (122)
Q Consensus         1 F~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~--------~f~~~-----------~~~V~i~~~p~~~~v~V~~F~G   61 (122)
                      |++|++||+|+|+++.||+||+||++++.++.++        .|.+|           .++|+|+++| +.++||++|+|
T Consensus        53 F~~L~~YI~G~N~~~~kI~MTaPV~~~~~~~~~~~~~~~~~m~F~lP~~~~~~~P~P~d~~V~i~~~p-~~~vav~~F~G  131 (184)
T d2gova1          53 MPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEERE-GITVYSTQFGG  131 (184)
T ss_dssp             HHHHHHHHHTCBTTCCCCCCCCCEEEEEEECTTSCEEEEEEEEECCCHHHHHSCCCBCSSSCEEEECC-SCEEEEEEEES
T ss_pred             hHHHhheeccCCCCCcccccccceEEEEecCCCCcccCcEEEEEEcchhhcccCCCCccccceeeccC-cceEEEEEeCC
Confidence            7899999999999999999999999998776221        13333           1789999999 99999999999


Q ss_pred             ccChhHHHHHHHHHHHHhhcCCCchheeccccccCCceEEEEeCCCCCCCCCeeeEEEEe
Q 036254           62 LMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQNENRINKVLLWF  121 (122)
Q Consensus        62 ~~~~~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd~P~~~~~R~NEVwi~~  121 (122)
                      ++++..+.+++++|+++|+++|+.        +..+.|++|+||+||++++|||||||..
T Consensus       132 ~~~~~~~~~~~~~L~~~L~~~g~~--------~~~~~~~~a~Yd~P~~p~~R~NEVw~vk  183 (184)
T d2gova1         132 YAKEADYVAHATQLRTTLEGTPAT--------YQGDVYYCAGYDPPMKPYGRRNEVWLVK  183 (184)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTSSCC--------EEEEEEEEEESSCCSSSSCCEEEEEEEE
T ss_pred             cccHHHHHHHHHHHHHHHHHCCCc--------ccCCCEEEEEeCCCCCCCCcceeEEEEe
Confidence            999999999999999999999875        4566788999999999989999999974

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=88.63  E-value=0.38  Score=30.37  Aligned_cols=69  Identities=9%  Similarity=-0.042  Sum_probs=44.8

Q ss_pred             CceeEEeCCCCcEEEEEEeccccChhHHHHHHHHH-HHHhhcCCCchheeccccccCCceEEEEeC-CCCCCCCCeeeEE
Q 036254           41 LQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASAL-KKSFKNSTWESAIIFNYKISDDHLSVAGYN-SPFQNENRINKVL  118 (122)
Q Consensus        41 ~~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L-~~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd-~P~~~~~R~NEVw  118 (122)
                      ..|.+.++| +.+.|+..+.|-..+  +.+....| .++|.++|+..         ...+.+-.|. .|.....-.=|||
T Consensus        82 ~~i~~~~lp-~g~yA~~~~~G~~~~--~~~~~~~~~~~wl~~~gy~~---------~~~p~~E~Y~~~~~~~~~~~~ei~  149 (155)
T d1jyha_          82 EGVILTEIT-GGQYAVAVARVVGDD--FAKPWYQFFNSLLQDSAYEM---------LPKPCFEVYLNNGAEDGYWDIEMY  149 (155)
T ss_dssp             TTCEEEEEC-CEEEEEEEEEECSSC--CHHHHHHHHHHHTTCSSEEE---------CSSCEEEEECSCHHHHSSEEEEEE
T ss_pred             ceEEEEEEC-CccEEEEEEccChHH--HHHHHHHHHhhhhhhcCCeE---------CCCccEEEEcCCCCCCCCEEEEEE
Confidence            348999999 999999999997543  33444455 68999998651         2334445664 2322222234999


Q ss_pred             EEe
Q 036254          119 LWF  121 (122)
Q Consensus       119 i~~  121 (122)
                      |+|
T Consensus       150 iPI  152 (155)
T d1jyha_         150 VAV  152 (155)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            987

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=88.28  E-value=1.8  Score=26.96  Aligned_cols=67  Identities=7%  Similarity=-0.001  Sum_probs=45.1

Q ss_pred             ceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHHHHhhcCCCchheeccccccCCceEEEEeCCCCCCC--CCeeeEEE
Q 036254           42 QAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGYNSPFQNE--NRINKVLL  119 (122)
Q Consensus        42 ~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~Yd~P~~~~--~R~NEVwi  119 (122)
                      ++.|+++| +.+|+-.+-.|-.. +.+.+--++|.+++.++++.          .......-||.|-...  .=+-++.+
T Consensus         2 ~~~I~~l~-~~~V~g~r~~g~~~-e~i~~~w~~l~~~~~~~~~~----------~~~~~~~~~~~p~~~~~~~~~~~~~v   69 (155)
T d1jyha_           2 NYEIKQEE-KRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNIV----------PKEWVAVYYDNPDETPAEKLRCDTVV   69 (155)
T ss_dssp             CCEEEEEC-CEEEEEEEEESCHH-HHHHHHHHHHHHHHHHTTCC----------CSEEEEEECSCTTTSCGGGCEEEEEE
T ss_pred             CcEEEEEC-CEEEEEEEEEcCcH-HHHHHHHHHHHHHHHHhCCC----------CCCceEEEecCcCcCCccceeEEEEE
Confidence            57899999 88888888888543 34667778888888888743          3344555677775433  23445544


Q ss_pred             E
Q 036254          120 W  120 (122)
Q Consensus       120 ~  120 (122)
                      .
T Consensus        70 ~   70 (155)
T d1jyha_          70 T   70 (155)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1r8ea2 d.60.1.1 (A:121-277) Multidrug-binding domain of transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Multidrug-binding domain of transcription activator BmrR
domain: Multidrug-binding domain of transcription activator BmrR
species: Bacillus subtilis [TaxId: 1423]

Probab=80.98  E-value=3.7  Score=26.13  Aligned_cols=68  Identities=4%  Similarity=-0.087  Sum_probs=48.9

Q ss_pred             CceeEEeCCCCcEEEEEEeccccChhHHHHHHHHHHHHhhcCCCchheeccccccCCceEEEEe-CCCCCCC---CCeee
Q 036254           41 LQAHPIKLPKHKYVVVRRFGGLMDDTSISTQASALKKSFKNSTWESAIIFNYKISDDHLSVAGY-NSPFQNE---NRINK  116 (122)
Q Consensus        41 ~~V~i~~~p~~~~v~V~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~i~~~~~~~~~~~~~A~Y-d~P~~~~---~R~NE  116 (122)
                      +++.+..+| +.++++..|.|...  ...+.-++|.+++.++|+..         .+ +.+-.| +.|+...   .-.-|
T Consensus        85 ~~~~~~~lp-~G~ya~~~~~G~y~--~~~~~y~~l~~~~~~~g~~~---------~g-~~~E~y~~d~~~~~~~~~~~te  151 (157)
T d1r8ea2          85 PDMEITTIP-KGRYACIAYNFSPE--HYFLNLQKLIKYIADRQLTV---------VS-DVYELIIPIHYSPKKQEEYRVE  151 (157)
T ss_dssp             TTSEEEEEC-SEEEEEEEEECCHH--HHHHHHHHHHHHHHHTTCCE---------EE-EEEEEEEESCCCSSSCCCEEEE
T ss_pred             CCceEEecC-CeEEEEEEEEECcc--chHHHHHHHHHHHHhcCcCc---------CC-CeEEEEEcCCCCCCCHHHeEEE
Confidence            689999999 99999999999764  46777788999999999652         12 333344 6665532   44567


Q ss_pred             EEEEe
Q 036254          117 VLLWF  121 (122)
Q Consensus       117 Vwi~~  121 (122)
                      |.|+|
T Consensus       152 I~ipv  156 (157)
T d1r8ea2         152 MKIRI  156 (157)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            76665