Citrus Sinensis ID: 036257

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
MTEVKVETISDSGVGSFTMSLQRRIEFHPARKPFSGFSNGGGDGGDFKLETLNPSSSSDHTRPGSGHQAKKVDGSELWDNGLDPELSFGTTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRDRKNIVPRKPTDVFRKKI
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEEEEEEcccccccccccccEEEEccccccccHHHHHHHcccccEEccccccccccccccccccEEEEEccccccEEEEEEccccccccccccccEEEccccccccccccccccccccEEEEEEEEEEcccccccEEEEEEEcccccEEEEEcccEEEEccccccccccEEEEEEEEcccccccccccHHcccc
ccEEEEEEcccccccccHHHHHHHEEEccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccHHcccccccccHHHHHcccHHHHHHHHHHHHccHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHcccEEEEEEEEEcccccccccccccEEccccccccHHHHHHHHccHHHcccccccccHHHHHccccccEEEEEEccccEEEEEEEEEccccccccEcEEccccccccccccccccccccEEEEEEEEEEEccccccccEEEEEEEcccccEEEEccccEccccHHHHHcccEEEEEEEEcccccccccccccccccc
MTEVKVETisdsgvgsFTMSLQRRiefhparkpfsgfsngggdggdfkletlnpssssdhtrpgsghqakkvdgselwdngldpelsfgtTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLqsgkhqsschiagFCALCAIQKHVSRALQATgrilapkdlvsnLRCISRNFRNSRQEDAHEYMVNLLESMhkcclpsgvpsesanAYEKSLVHKIFggrlrsqvkctqcsycsnkfdpfLDLSLEIAKADSVLKALNNFTAAelldggekeyhCQRCKQKVRALKQLTVYKAPYVLTIHLkrfrahdpgqkndkkvqfgstldmkpfvsgsyegdlkYTLYGVLVhhgwsthsghYYCFvrtssgmwyslddnrvvqVNERSVLEQKAYMLFYVrdrknivprkptdvfrkki
mtevkvetisdsgvgsfTMSLQRRIEFHPARKPFSGFSNGGGDGGDFKLETLNPSsssdhtrpgsghqakkvdgselwDNGLDPELSFGTTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATgrilapkdlvsnLRCIsrnfrnsrqeDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLkrfrahdpgqkndkkvqfgstldmkpfVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQKAYmlfyvrdrknivprkptdvfrkki
MTEVKVETISDSGVGSFTMSLQRRIEFHPARKPfsgfsngggdggdfKLETLNPSSSSDHTRPGSGHQAKKVDGSELWDNGLDPELSFGTTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRDRKNIVPRKPTDVFRKKI
****************************************************************************LWDNGLDPELSFGTTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVP***ANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAH***********FGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRDRKNIV************
****************************************************************************************GTTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMH*******************LVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQKAYMLFY********************
**********DSGVGSFTMSLQRRIEFHPARKPFSGFSNGGGDGGDFKLETLN*******************DGSELWDNGLDPELSFGTTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRDRKNIVPRKPTDVFRKKI
*TEVKVETISDSGVGSFTMSLQRRIEFHPARKPFSGFS*****GGDFKLETLNP************************DNGLDPELSFGTTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGV*******YEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRDR****************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MTEVKVETISDSGVGSFTMSLQRRIEFHPARKPFSGFSNGGGDGGDFKLETLNPSSSSDHTRPGSGHQAKKVDGSELWDNGLDPELSFGTTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRDRKNIVPRKPTDVFRKKI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query418 2.2.26 [Sep-21-2011]
Q9FPS4 859 Ubiquitin carboxyl-termin yes no 0.980 0.477 0.703 1e-176
B1AQJ2 1098 Ubiquitin carboxyl-termin yes no 0.875 0.333 0.411 2e-80
D3ZU96 1325 Ubiquitin carboxyl-termin yes no 0.736 0.232 0.466 3e-80
B2RQC2 1324 Ubiquitin carboxyl-termin no no 0.736 0.232 0.463 7e-80
Q9H9J4 1324 Ubiquitin carboxyl-termin yes no 0.736 0.232 0.463 1e-79
E1B9W9 1333 Ubiquitin carboxyl-termin yes no 0.736 0.231 0.463 2e-79
Q9P275 1121 Ubiquitin carboxyl-termin no no 0.873 0.325 0.415 6e-79
D6RCP7 530 Ubiquitin carboxyl-termin no no 0.741 0.584 0.428 7e-73
C9J2P7 530 Ubiquitin carboxyl-termin no no 0.741 0.584 0.431 7e-73
D6R9N7 530 Ubiquitin carboxyl-termin no no 0.741 0.584 0.428 7e-73
>sp|Q9FPS4|UBP23_ARATH Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana GN=UBP23 PE=2 SV=2 Back     alignment and function desciption
 Score =  617 bits (1592), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 299/425 (70%), Positives = 344/425 (80%), Gaps = 15/425 (3%)

Query: 2   TEVKVETISDS--------GVGSFTMS-LQRRIEFHPARKPFSGFSNGGGDGGDFKLETL 52
           TE+ ++T  D          V S T S + R+IEFHPARKPF+GFSNG  D   FK+ETL
Sbjct: 8   TEITIQTDRDPSSNNNGSCAVASSTASAVFRKIEFHPARKPFNGFSNGRSD---FKIETL 64

Query: 53  NPSSSSDHTRPGSGHQAKKVDGSELWDNGLDPELSFGTTFRRIGAGLENLGNTCFLNSVL 112
           NP SS  + R  S   AKK D S+L ++G +P+L+F  TFR+IGAGL+NLGNTCFLNSVL
Sbjct: 65  NPCSS--NQRLLSAPSAKKPDSSDLLEHGFEPDLTFSITFRKIGAGLQNLGNTCFLNSVL 122

Query: 113 QCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCI 172
           QCLTYTEPLAA LQ+  HQ  CH+AGFCALCAIQKHV  A QA GRILAPKDLVSNLRCI
Sbjct: 123 QCLTYTEPLAATLQTAAHQKYCHVAGFCALCAIQKHVRTARQANGRILAPKDLVSNLRCI 182

Query: 173 SRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCT 232
           SRNFRN RQEDAHEYM+NLLE MHKC LPSGVPSES++AY +SLVHKIFGG LRSQVKC 
Sbjct: 183 SRNFRNCRQEDAHEYMINLLECMHKCSLPSGVPSESSDAYRRSLVHKIFGGSLRSQVKCE 242

Query: 233 QCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQL 292
           QCS+CSNKFDPFLDLSL+I+KADS+ +AL+ FTA ELLD G K Y C+RCKQKV+A KQL
Sbjct: 243 QCSHCSNKFDPFLDLSLDISKADSLQRALSRFTAVELLDNGAKVYQCERCKQKVKAKKQL 302

Query: 293 TVYKAPYVLTIHLKRFRAHDPGQKNDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHH 352
           TV KAPYVLT+HLKRF AH   +K D+KV F S +DMKPFVSG +EG+LKYTLYGVLVH+
Sbjct: 303 TVSKAPYVLTVHLKRFEAHR-SEKIDRKVDFTSAIDMKPFVSGPHEGNLKYTLYGVLVHY 361

Query: 353 GWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRDRKNIVPRKPTD 412
           G S+HSGHY CFVRTSSGMWYSLDDNRVVQV+E++V  QKAYMLFYVRDR+N VP+    
Sbjct: 362 GRSSHSGHYACFVRTSSGMWYSLDDNRVVQVSEKTVFNQKAYMLFYVRDRQNAVPKNSVP 421

Query: 413 VFRKK 417
           V +K+
Sbjct: 422 VVKKE 426
Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2
>sp|B1AQJ2|UBP36_MOUSE Ubiquitin carboxyl-terminal hydrolase 36 OS=Mus musculus GN=Usp36 PE=2 SV=1 Back     alignment and function description
>sp|D3ZU96|UBP42_RAT Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus norvegicus GN=Usp42 PE=3 SV=1 Back     alignment and function description
>sp|B2RQC2|UBP42_MOUSE Ubiquitin carboxyl-terminal hydrolase 42 OS=Mus musculus GN=Usp42 PE=2 SV=1 Back     alignment and function description
>sp|Q9H9J4|UBP42_HUMAN Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42 PE=1 SV=3 Back     alignment and function description
>sp|E1B9W9|UBP42_BOVIN Ubiquitin carboxyl-terminal hydrolase 42 OS=Bos taurus GN=USP42 PE=3 SV=1 Back     alignment and function description
>sp|Q9P275|UBP36_HUMAN Ubiquitin carboxyl-terminal hydrolase 36 OS=Homo sapiens GN=USP36 PE=1 SV=3 Back     alignment and function description
>sp|D6RCP7|U17LJ_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 19 OS=Homo sapiens GN=USP17L19 PE=3 SV=1 Back     alignment and function description
>sp|C9J2P7|U17LF_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 15 OS=Homo sapiens GN=USP17L15 PE=3 SV=1 Back     alignment and function description
>sp|D6R9N7|U17LI_HUMAN Ubiquitin carboxyl-terminal hydrolase 17-like protein 18 OS=Homo sapiens GN=USP17L18 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query418
225461822 955 PREDICTED: ubiquitin carboxyl-terminal h 0.952 0.416 0.800 0.0
302142802 915 unnamed protein product [Vitis vinifera] 0.952 0.434 0.800 0.0
359495422 997 PREDICTED: ubiquitin carboxyl-terminal h 0.942 0.395 0.805 0.0
296088835 520 unnamed protein product [Vitis vinifera] 0.942 0.757 0.805 0.0
356498762 879 PREDICTED: ubiquitin carboxyl-terminal h 0.928 0.441 0.801 0.0
356564905 903 PREDICTED: ubiquitin carboxyl-terminal h 0.930 0.430 0.788 0.0
224143963436 predicted protein [Populus trichocarpa] 0.980 0.940 0.740 1e-178
357480083 855 Ubiquitin carboxyl-terminal hydrolase [M 0.935 0.457 0.741 1e-176
297796717 863 ubiquitin-specific protease 23 [Arabidop 0.980 0.475 0.705 1e-175
11993486 859 ubiquitin-specific protease 23 [Arabidop 0.980 0.477 0.703 1e-174
>gi|225461822|ref|XP_002283705.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 23-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  684 bits (1765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/411 (80%), Positives = 359/411 (87%), Gaps = 13/411 (3%)

Query: 12  SGVGSFTMSLQRRIEFHPARKPFSGFSNGGGDGGDFKLETLNPSSSSDHTRPG-----SG 66
           S  GSF     RRIEFH ARKPFSGF+NGGG    F+LETLNP++  D  RPG     + 
Sbjct: 26  SSTGSF---FHRRIEFHLARKPFSGFTNGGGG---FRLETLNPTT--DPKRPGHSTGPAA 77

Query: 67  HQAKKVDGSELWDNGLDPELSFGTTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQ 126
              KK DGS+  +NGLDPELS G TFRRIGAGLENLGNTC+LNSVLQCLTYTEPLAAYLQ
Sbjct: 78  SSGKKQDGSDHVENGLDPELSIGITFRRIGAGLENLGNTCYLNSVLQCLTYTEPLAAYLQ 137

Query: 127 SGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCISRNFRNSRQEDAHE 186
           SGKHQ+SC IAGFCALCAIQKHVSRALQ+TGRIL PKDLVSNLRCISRNFRN+RQEDAHE
Sbjct: 138 SGKHQNSCRIAGFCALCAIQKHVSRALQSTGRILVPKDLVSNLRCISRNFRNARQEDAHE 197

Query: 187 YMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLD 246
           YMV+LLE+MHKCCLPSGVPSES +AYEKSLVHKIFGG LRSQVKC QCSYCSNKFDPFLD
Sbjct: 198 YMVHLLETMHKCCLPSGVPSESPSAYEKSLVHKIFGGLLRSQVKCMQCSYCSNKFDPFLD 257

Query: 247 LSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLK 306
           LSLEI KADS+ KAL +FTA E LDGGE++Y CQRCKQKV+ALKQLTV+KAPYVLTIHLK
Sbjct: 258 LSLEIFKADSLHKALVHFTATEQLDGGERQYQCQRCKQKVKALKQLTVHKAPYVLTIHLK 317

Query: 307 RFRAHDPGQKNDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVR 366
           RF AHDPGQK DKKV FG T+D+KPFVSGSYE +LKYTLYGVLVH GWSTHSGHYYCFVR
Sbjct: 318 RFGAHDPGQKIDKKVHFGPTMDLKPFVSGSYEENLKYTLYGVLVHAGWSTHSGHYYCFVR 377

Query: 367 TSSGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRDRKNIVPRKPTDVFRKK 417
           TS+GMWYSLDDNRVVQV+ER+VL+QKAYMLFYVRDRKN  P+K  DV +K+
Sbjct: 378 TSTGMWYSLDDNRVVQVSERTVLDQKAYMLFYVRDRKNFTPKKSIDVVQKQ 428

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302142802|emb|CBI20097.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359495422|ref|XP_003634989.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 23-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296088835|emb|CBI38293.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356498762|ref|XP_003518218.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 23-like [Glycine max] Back     alignment and taxonomy information
>gi|356564905|ref|XP_003550687.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 23-like [Glycine max] Back     alignment and taxonomy information
>gi|224143963|ref|XP_002325138.1| predicted protein [Populus trichocarpa] gi|222866572|gb|EEF03703.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357480083|ref|XP_003610327.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355511382|gb|AES92524.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297796717|ref|XP_002866243.1| ubiquitin-specific protease 23 [Arabidopsis lyrata subsp. lyrata] gi|297312078|gb|EFH42502.1| ubiquitin-specific protease 23 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|11993486|gb|AAG42761.1|AF302671_1 ubiquitin-specific protease 23 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query418
TAIR|locus:2174403 859 UBP23 "ubiquitin-specific prot 0.980 0.477 0.687 1.1e-151
DICTYBASE|DDB_G0274827 919 DDB_G0274827 "putative ubiquit 0.736 0.335 0.477 4.3e-77
ZFIN|ZDB-GENE-030131-5739 1047 usp42 "ubiquitin specific pept 0.734 0.293 0.466 1.3e-75
ZFIN|ZDB-GENE-030131-5450 1104 usp36 "ubiquitin specific pept 0.901 0.341 0.415 1.7e-75
MGI|MGI:1919594 1098 Usp36 "ubiquitin specific pept 0.892 0.339 0.416 7.4e-75
UNIPROTKB|E2RKV1 1117 USP36 "Ubiquitin carboxyl-term 0.892 0.333 0.408 9.3e-75
UNIPROTKB|E1BGW4 1101 USP36 "Ubiquitin carboxyl-term 0.889 0.337 0.417 1.3e-74
UNIPROTKB|Q9P275 1121 USP36 "Ubiquitin carboxyl-term 0.899 0.335 0.414 2.1e-74
RGD|1305231 1325 Usp42 "ubiquitin specific pept 0.736 0.232 0.466 2.4e-74
UNIPROTKB|F1RZ74 1121 USP36 "Ubiquitin carboxyl-term 0.744 0.277 0.463 4.6e-74
TAIR|locus:2174403 UBP23 "ubiquitin-specific protease 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1480 (526.0 bits), Expect = 1.1e-151, P = 1.1e-151
 Identities = 292/425 (68%), Positives = 337/425 (79%)

Query:     2 TEVKVETISD-----SG---VGSFTMS-LQRRIEFHPARKPXXXXXXXXXXXXXXKLETL 52
             TE+ ++T  D     +G   V S T S + R+IEFHPARKP              K+ETL
Sbjct:     8 TEITIQTDRDPSSNNNGSCAVASSTASAVFRKIEFHPARKPFNGFSNGRSDF---KIETL 64

Query:    53 NPSSSSDHTRPGSGHQAKKVDGSELWDNGLDPELSFGTTFRRIGAGLENLGNTCFLNSVL 112
             NP SS+   R  S   AKK D S+L ++G +P+L+F  TFR+IGAGL+NLGNTCFLNSVL
Sbjct:    65 NPCSSNQ--RLLSAPSAKKPDSSDLLEHGFEPDLTFSITFRKIGAGLQNLGNTCFLNSVL 122

Query:   113 QCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCI 172
             QCLTYTEPLAA LQ+  HQ  CH+AGFCALCAIQKHV  A QA GRILAPKDLVSNLRCI
Sbjct:   123 QCLTYTEPLAATLQTAAHQKYCHVAGFCALCAIQKHVRTARQANGRILAPKDLVSNLRCI 182

Query:   173 SRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCT 232
             SRNFRN RQEDAHEYM+NLLE MHKC LPSGVPSES++AY +SLVHKIFGG LRSQVKC 
Sbjct:   183 SRNFRNCRQEDAHEYMINLLECMHKCSLPSGVPSESSDAYRRSLVHKIFGGSLRSQVKCE 242

Query:   233 QCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQL 292
             QCS+CSNKFDPFLDLSL+I+KADS+ +AL+ FTA ELLD G K Y C+RCKQKV+A KQL
Sbjct:   243 QCSHCSNKFDPFLDLSLDISKADSLQRALSRFTAVELLDNGAKVYQCERCKQKVKAKKQL 302

Query:   293 TVYKAPYVLTIHLKRFRAHDPGQKNDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHH 352
             TV KAPYVLT+HLKRF AH   +K D+KV F S +DMKPFVSG +EG+LKYTLYGVLVH+
Sbjct:   303 TVSKAPYVLTVHLKRFEAHR-SEKIDRKVDFTSAIDMKPFVSGPHEGNLKYTLYGVLVHY 361

Query:   353 GWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRDRKNIVPRKPTD 412
             G S+HSGHY CFVRTSSGMWYSLDDNRVVQV+E++V  QKAYMLFYVRDR+N VP+    
Sbjct:   362 GRSSHSGHYACFVRTSSGMWYSLDDNRVVQVSEKTVFNQKAYMLFYVRDRQNAVPKNSVP 421

Query:   413 VFRKK 417
             V +K+
Sbjct:   422 VVKKE 426
GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA
GO:0004843 "ubiquitin-specific protease activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0009165 "nucleotide biosynthetic process" evidence=RCA
DICTYBASE|DDB_G0274827 DDB_G0274827 "putative ubiquitin carboxyl-terminal hydrolase (UCH)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5739 usp42 "ubiquitin specific peptidase 42" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5450 usp36 "ubiquitin specific peptidase 36" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1919594 Usp36 "ubiquitin specific peptidase 36" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RKV1 USP36 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BGW4 USP36 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9P275 USP36 "Ubiquitin carboxyl-terminal hydrolase 36" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1305231 Usp42 "ubiquitin specific peptidase 42" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1RZ74 USP36 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FPS4UBP23_ARATH3, ., 4, ., 1, 9, ., 1, 20.70350.98080.4772yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.190.766
3rd Layer3.4.19.120.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027930001
RecName- Full=Ubiquitin carboxyl-terminal hydrolase; EC=3.1.2.15; (632 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query418
cd02661304 cd02661, Peptidase_C19E, A subfamily of Peptidase 1e-167
pfam00443313 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol 1e-86
cd02660328 cd02660, Peptidase_C19D, A subfamily of Peptidase 4e-72
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 3e-62
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 3e-56
cd02667279 cd02667, Peptidase_C19K, A subfamily of Peptidase 2e-53
cd02663300 cd02663, Peptidase_C19G, A subfamily of Peptidase 1e-50
cd02659334 cd02659, peptidase_C19C, A subfamily of Peptidase 2e-49
cd02668324 cd02668, Peptidase_C19L, A subfamily of Peptidase 5e-37
cd02664327 cd02664, Peptidase_C19H, A subfamily of Peptidase 7e-36
COG5533415 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos 1e-34
cd02662240 cd02662, Peptidase_C19F, A subfamily of Peptidase 2e-29
cd02658311 cd02658, Peptidase_C19B, A subfamily of Peptidase 8e-28
COG5077 1089 COG5077, COG5077, Ubiquitin carboxyl-terminal hydr 1e-27
cd02657305 cd02657, Peptidase_C19A, A subfamily of Peptidase 5e-26
cd02671332 cd02671, Peptidase_C19O, A subfamily of Peptidase 1e-23
pfam13423296 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr 1e-19
COG5560823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 1e-18
cd02669440 cd02669, Peptidase_C19M, A subfamily of Peptidase 7e-15
COG5560 823 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po 1e-12
COG5207 749 COG5207, UBP14, Isopeptidase T [Posttranslational 2e-12
cd02673245 cd02673, Peptidase_C19Q, A subfamily of Peptidase 2e-11
cd02670241 cd02670, Peptidase_C19N, A subfamily of Peptidase 4e-08
cd02666343 cd02666, Peptidase_C19J, A subfamily of Peptidase 4e-07
cd02257255 cd02257, Peptidase_C19, Peptidase C19 contains ubi 5e-06
cd02674230 cd02674, Peptidase_C19R, A subfamily of peptidase 1e-05
COG5207749 COG5207, UBP14, Isopeptidase T [Posttranslational 2e-04
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 Back     alignment and domain information 
 Score =  470 bits (1211), Expect = e-167
 Identities = 169/306 (55%), Positives = 223/306 (72%), Gaps = 4/306 (1%)

Query: 96  GAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQA 155
           GAGL+NLGNTCFLNSVLQCLT+T PLA YL S +H   C   GFC +CA++ HV RAL +
Sbjct: 1   GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALAS 60

Query: 156 TGRILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESAN--AYE 213
           +G   AP+   SNL+ IS++FR  RQEDAHE++  LL++M K CL      ++ +  + E
Sbjct: 61  SGPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKAVDPSSQE 120

Query: 214 KSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGG 273
            +LV +IFGG LRSQVKC  C + SN +DPFLDLSL+I  ADS+  AL  FT  E LDG 
Sbjct: 121 TTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIKGADSLEDALEQFTKPEQLDGE 180

Query: 274 EKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQKNDKKVQFGSTLDMKPFV 333
            K Y C+RCK+KV+A KQLT+++AP VLTIHLKRF ++  G K +K++ F  TLD+ P++
Sbjct: 181 NK-YKCERCKKKVKASKQLTIHRAPNVLTIHLKRF-SNFRGGKINKQISFPETLDLSPYM 238

Query: 334 SGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQKA 393
           S   +G LKY LY VLVH G+S HSGHYYC+V++S+G WY++DD++V  V+  +VL QKA
Sbjct: 239 SQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQKA 298

Query: 394 YMLFYV 399
           Y+LFY+
Sbjct: 299 YILFYI 304

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239135 cd02670, Peptidase_C19N, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19 Back     alignment and domain information
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 Back     alignment and domain information
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 418
KOG1865 545 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
cd02661304 Peptidase_C19E A subfamily of Peptidase C19. Pepti 100.0
cd02668324 Peptidase_C19L A subfamily of Peptidase C19. Pepti 100.0
cd02663300 Peptidase_C19G A subfamily of Peptidase C19. Pepti 100.0
cd02660328 Peptidase_C19D A subfamily of Peptidase C19. Pepti 100.0
cd02669440 Peptidase_C19M A subfamily of Peptidase C19. Pepti 100.0
cd02664327 Peptidase_C19H A subfamily of Peptidase C19. Pepti 100.0
cd02671332 Peptidase_C19O A subfamily of Peptidase C19. Pepti 100.0
cd02667279 Peptidase_C19K A subfamily of Peptidase C19. Pepti 100.0
cd02657305 Peptidase_C19A A subfamily of Peptidase C19. Pepti 100.0
cd02658311 Peptidase_C19B A subfamily of Peptidase C19. Pepti 100.0
cd02659334 peptidase_C19C A subfamily of Peptidase C19. Pepti 100.0
COG5560823 UBP12 Ubiquitin C-terminal hydrolase [Posttranslat 100.0
cd02662240 Peptidase_C19F A subfamily of Peptidase C19. Pepti 100.0
COG5533415 UBP5 Ubiquitin C-terminal hydrolase [Posttranslati 100.0
cd02674230 Peptidase_C19R A subfamily of peptidase C19. Pepti 100.0
KOG0944763 consensus Ubiquitin-specific protease UBP14 [Postt 100.0
cd02666343 Peptidase_C19J A subfamily of Peptidase C19. Pepti 100.0
KOG1866 944 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
PF00443269 UCH: Ubiquitin carboxyl-terminal hydrolase; InterP 100.0
cd02665228 Peptidase_C19I A subfamily of Peptidase C19. Pepti 100.0
KOG1868653 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
cd02673245 Peptidase_C19Q A subfamily of Peptidase C19. Pepti 100.0
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 100.0
KOG1867492 consensus Ubiquitin-specific protease [Posttransla 100.0
cd02257255 Peptidase_C19 Peptidase C19 contains ubiquitinyl h 100.0
KOG1873877 consensus Ubiquitin-specific protease [Posttransla 100.0
COG5207749 UBP14 Isopeptidase T [Posttranslational modificati 100.0
cd02672268 Peptidase_C19P A subfamily of Peptidase C19. Pepti 100.0
KOG4598 1203 consensus Putative ubiquitin-specific protease [Po 100.0
KOG1870842 consensus Ubiquitin C-terminal hydrolase [Posttran 100.0
PF13423295 UCH_1: Ubiquitin carboxyl-terminal hydrolase 100.0
KOG1863 1093 consensus Ubiquitin carboxyl-terminal hydrolase [P 100.0
KOG2026442 consensus Spindle pole body protein - Sad1p [Cytos 100.0
cd02670241 Peptidase_C19N A subfamily of Peptidase C19. Pepti 100.0
KOG1864587 consensus Ubiquitin-specific protease [Posttransla 100.0
KOG1872473 consensus Ubiquitin-specific protease [Posttransla 99.97
KOG1871420 consensus Ubiquitin-specific protease [Posttransla 99.97
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 99.9
PF15499275 Peptidase_C98: Ubiquitin-specific peptidase-like, 99.18
PF08715320 Viral_protease: Papain like viral protease; InterP 97.31
KOG1864 587 consensus Ubiquitin-specific protease [Posttransla 97.22
KOG1887806 consensus Ubiquitin carboxyl-terminal hydrolase [P 96.94
KOG3556724 consensus Familial cylindromatosis protein [Genera 96.92
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 94.89
PF05408193 Peptidase_C28: Foot-and-mouth virus L-proteinase; 87.29
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=7.5e-76  Score=559.19  Aligned_cols=319  Identities=52%  Similarity=0.900  Sum_probs=300.9

Q ss_pred             CCCCCCCccc---cccccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhc
Q 036257           80 NGLDPELSFG---TTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQAT  156 (418)
Q Consensus        80 ~~~~p~~~~~---~~~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  156 (418)
                      ..+.|.+.+.   .++...++||.|+|||||+|||||||.++||+.+||++..|...|+....|++|+++.++.+.+...
T Consensus        89 k~Lfp~e~~~~~~~~~~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~~  168 (545)
T KOG1865|consen   89 KVLFPYEKLPLSSDRPAAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHNP  168 (545)
T ss_pred             hhccccceecccccccccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcCC
Confidence            4444533332   4467788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccChHHHHHHHHhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCC
Q 036257          157 GRILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSY  236 (418)
Q Consensus       157 ~~~v~p~~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~  236 (418)
                      +.+++|..++..|+.+...|..|.|+||||||+++++.|+..|+ .+....+...++.++|+++|+|.++++++|..|++
T Consensus       169 g~pisP~~i~s~L~~I~~~f~~grQEDAHEFLr~~vd~mqk~cL-~g~~~~~~~sq~ttlv~~iFGG~LrS~vkC~~C~~  247 (545)
T KOG1865|consen  169 GHPISPSQILSNLRNISAHFGRGRQEDAHEFLRFTVDAMQKACL-PGHKQVDPRSQDTTLVHQIFGGYLRSQIKCLHCKG  247 (545)
T ss_pred             CCccChHHHHHhhhhhcccccCCchhhHHHHHHHHHHHHHHhhc-CCCccCCcccccceehhhhhccchhhceecccCCC
Confidence            99999999999999999999999999999999999999999998 55666677888999999999999999999999999


Q ss_pred             ccccccccccccccccccccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCCCCCc
Q 036257          237 CSNKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDPGQK  316 (418)
Q Consensus       237 ~s~~~e~f~~l~l~i~~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~~~K  316 (418)
                      ++.++|+.++|+|+|....+|+++|++|+..|.++| ++.|+|++|+++++|.|+.+|.++|+||+|||+||+. +...|
T Consensus       248 vS~tyE~~~dltvei~d~~sl~~AL~qFt~~E~L~g-en~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~-~~~gK  325 (545)
T KOG1865|consen  248 VSDTYEPYLDLTLEIQDASSLQQALEQFTKPEKLDG-ENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN-GTGGK  325 (545)
T ss_pred             cccccccccceEEEeccchhHHHHHHHhhhHHhhCC-ccccccchhhhhCcccceeeeecCCceEEEeeehhcc-Ccccc
Confidence            999999999999999999999999999999999995 6669999999999999999999999999999999996 67799


Q ss_pred             ccceeecCCCCCCCCCcCCCCCCCceEEEEEEEEeeecCCCCCceEEEEECCCCCEEEEeCCceeeecccccCCCCcEEE
Q 036257          317 NDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQKAYML  396 (418)
Q Consensus       317 ~~~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~a~vr~~~~~W~~~dD~~V~~v~~~~v~~~~aYil  396 (418)
                      +.+.|.||+.|||.+||+.....+..|.|||||+|.|.+.++|||+||||..+|+||.+||+.|+.++.+.|++++||||
T Consensus       326 I~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLsq~AYmL  405 (545)
T KOG1865|consen  326 ISKPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESVLSQQAYIL  405 (545)
T ss_pred             cccccCCcccccccccccCCCCCCceEEEEEEEEeccccccCCceEEEEEcCCCceEEccCceeeeccccceecccceEE
Confidence            99999999999999999988889999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEe
Q 036257          397 FYVRD  401 (418)
Q Consensus       397 ~Y~r~  401 (418)
                      ||.|+
T Consensus       406 fY~R~  410 (545)
T KOG1865|consen  406 FYARK  410 (545)
T ss_pred             EEEee
Confidence            99997

>cd02661 Peptidase_C19E A subfamily of Peptidase C19 Back     alignment and domain information
>cd02668 Peptidase_C19L A subfamily of Peptidase C19 Back     alignment and domain information
>cd02663 Peptidase_C19G A subfamily of Peptidase C19 Back     alignment and domain information
>cd02660 Peptidase_C19D A subfamily of Peptidase C19 Back     alignment and domain information
>cd02669 Peptidase_C19M A subfamily of Peptidase C19 Back     alignment and domain information
>cd02664 Peptidase_C19H A subfamily of Peptidase C19 Back     alignment and domain information
>cd02671 Peptidase_C19O A subfamily of Peptidase C19 Back     alignment and domain information
>cd02667 Peptidase_C19K A subfamily of Peptidase C19 Back     alignment and domain information
>cd02657 Peptidase_C19A A subfamily of Peptidase C19 Back     alignment and domain information
>cd02658 Peptidase_C19B A subfamily of Peptidase C19 Back     alignment and domain information
>cd02659 peptidase_C19C A subfamily of Peptidase C19 Back     alignment and domain information
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02662 Peptidase_C19F A subfamily of Peptidase C19 Back     alignment and domain information
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02674 Peptidase_C19R A subfamily of peptidase C19 Back     alignment and domain information
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02666 Peptidase_C19J A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd02665 Peptidase_C19I A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19 Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases Back     alignment and domain information
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02672 Peptidase_C19P A subfamily of Peptidase C19 Back     alignment and domain information
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase Back     alignment and domain information
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] Back     alignment and domain information
>cd02670 Peptidase_C19N A subfamily of Peptidase C19 Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase Back     alignment and domain information
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein Back     alignment and domain information
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only] Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query418
4fip_A476 Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- 2e-38
3mhh_A476 Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE 9e-38
3m99_A471 Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod 1e-37
3v6c_A367 Crystal Structure Of Usp2 In Complex With Mutated U 1e-33
2hd5_A359 Usp2 In Complex With Ubiquitin Length = 359 4e-33
3nhe_A348 High Resolution Structure (1.26a) Of Usp2a In Compl 5e-32
2ibi_A374 Covalent Ubiquitin-Usp2 Complex Length = 374 6e-32
3mtn_A373 Usp21 In Complex With A Ubiquitin-based, Usp21-spec 4e-30
3i3t_A355 Crystal Structure Of Covalent Ubiquitin-usp21 Compl 5e-30
2y5b_A370 Structure Of Usp21 In Complex With Linear Diubiquit 7e-30
3n3k_A396 The Catalytic Domain Of Usp8 In Complex With A Usp8 1e-26
2y6e_A367 Ubiquitin Specific Protease 4 Is Inhibited By Its U 7e-26
2gfo_A396 Structure Of The Catalytic Domain Of Human Ubiquiti 2e-25
2f1z_A522 Crystal Structure Of Hausp Length = 522 1e-20
1nbf_A353 Crystal Structure Of A Ubp-Family Deubiquitinating 2e-20
1nb8_A353 Structure Of The Catalytic Domain Of Usp7 (Hausp) L 2e-17
2ayn_A404 Structure Of Usp14, A Proteasome-Associated Deubiqu 4e-10
1vjv_A415 Crystal Structure Of Ubiquitin Carboxyl-terminal Hy 3e-04
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 Back     alignment and structure 
Iteration: 1

 Score =  156 bits (394), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/343 (31%), Positives = 172/343 (50%), Gaps = 34/343 (9%)
Query: 93  RRIG-AGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHI--AGFCALCAIQKHV 149
           RR G +GL N+GNTCF++S+LQCL +      +  S  H ++C +     C  CA+ K V
Sbjct: 137 RRDGLSGLINMGNTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIV 196
Query: 150 ------------SRALQATGRILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHK 197
                       S +  +T R      L++    I++N     Q+DAHE+   ++  +H+
Sbjct: 197 HELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQDAHEFWQFIINQIHQ 256
Query: 198 CC---LPSGVPSESANAYE-KSLVHKIFGGRLRSQVKCTQCSYCS-NKFDPFLDLSLEIA 252
                LP+      AN  + + +VH +F G L S + C  C   S    DPFLDLSL+I 
Sbjct: 257 SYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIK 316
Query: 253 KADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFR--A 310
               + + L++F   E L   +  YHC  C     A+KQL ++K P VL + LKRF    
Sbjct: 317 DKKKLYECLDSFHKKEQLK--DFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLL 374
Query: 311 HDPGQKNDKKVQFGSTLDMKPFVSGSYEG---------DLKYTLYGVLVHHGWSTHSGHY 361
           +   +K D  ++F + L+MK + S   +          D+ Y L G++ H G + + GHY
Sbjct: 375 NGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKG-TVNEGHY 433
Query: 362 YCFVRTSSGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRDRKN 404
             F + S G W+  +D+ V  +++  VL+++AY+LFY   + N
Sbjct: 434 IAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQVN 476
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 Back     alignment and structure
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 Back     alignment and structure
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 Back     alignment and structure
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 Back     alignment and structure
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 Back     alignment and structure
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 Back     alignment and structure
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 Back     alignment and structure
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 Back     alignment and structure
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 Back     alignment and structure
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 Back     alignment and structure
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 Back     alignment and structure
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 Back     alignment and structure
>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522 Back     alignment and structure
>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353 Back     alignment and structure
>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353 Back     alignment and structure
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated Deubiquitinating Enzyme Length = 404 Back     alignment and structure
>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase 6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A Resolution Length = 415 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query418
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 1e-123
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 1e-112
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 1e-110
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 1e-105
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 3e-93
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 2e-91
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 4e-90
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 7e-89
3ihp_A 854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 1e-32
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 1e-15
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 7e-31
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 Back     alignment and structure
 Score =  364 bits (935), Expect = e-123
 Identities = 105/358 (29%), Positives = 173/358 (48%), Gaps = 34/358 (9%)

Query: 78  WDNGLDPELSFGTTFRRIG-AGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHI 136
           + + +  +    +  RR G +GL N+G+TCF++S+LQCL +      +  S  H ++C +
Sbjct: 122 YWDDVCTKTMVPSMERRDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKV 181

Query: 137 A--GFCALCAIQKHVSRALQA------------TGRILAPKDLVSNLRCISRNFRNSRQE 182
                C  CA+ K V     A            T R      L++    I++N     Q+
Sbjct: 182 RSPDKCFSCALDKIVHELYGALNTKQASSSSTSTNRQTGFIYLLTCAWKINQNLAGYSQQ 241

Query: 183 DAHEYMVNLLESMHKCCL----PSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCS 238
           DAHE+   ++  +H+  +     +   S + N   + +VH +F G L S + C  C   S
Sbjct: 242 DAHEFWQFIINQIHQSYVLDLPNAKEVSRANNKQCECIVHTVFEGSLESSIVCPGCQNNS 301

Query: 239 -NKFDPFLDLSLEIAKADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKA 297
               DPFLDLSL+I     + + L++F   E L      YHC  C     A+KQL ++K 
Sbjct: 302 KTTIDPFLDLSLDIKDKKKLYECLDSFHKKEQLKD--FNYHCGECNSTQDAIKQLGIHKL 359

Query: 298 PYVLTIHLKRFR--AHDPGQKNDKKVQFGSTLDMKPFVSGSYEG---------DLKYTLY 346
           P VL + LKRF    +   +K D  ++F + L+MK + S   +          D+ Y L 
Sbjct: 360 PSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYELI 419

Query: 347 GVLVHHGWSTHSGHYYCFVRTSSGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRDRKN 404
           G++ H G + + GHY  F + S G W+  +D+ V  +++  VL+++AY+LFY   + N
Sbjct: 420 GIVSHKG-TVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQVN 476
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 Back     alignment and structure
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 Back     alignment and structure
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query418
2y6e_A367 Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 100.0
2gfo_A396 Ubiquitin carboxyl-terminal hydrolase 8; protease, 100.0
3nhe_A348 Ubiquitin carboxyl-terminal hydrolase 2; cysteine 100.0
3i3t_A355 Ubiquitin carboxyl-terminal hydrolase 21; hydrolas 100.0
2ayn_A404 Ubiquitin carboxyl-terminal hydrolase 14; deubiqui 100.0
1nb8_A353 Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub 100.0
3mhs_A476 Ubiquitin carboxyl-terminal hydrolase 8; multi-pro 100.0
1vjv_A415 Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, 100.0
2f1z_A522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 100.0
3ihp_A854 Ubiquitin carboxyl-terminal hydrolase 5; hydrolase 100.0
2vhf_A374 Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki 99.97
3mp2_A211 Non-structural protein 3; papain-like protease, TG 97.94
2fe8_A315 PP1AB, ORF1AB, replicase polyprotein 1AB; protease 97.64
1qmy_A167 Protease, leader protease; hydrolase, sulfhydryl p 89.03
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=6.4e-68  Score=516.23  Aligned_cols=314  Identities=28%  Similarity=0.485  Sum_probs=272.3

Q ss_pred             ccccccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccc-----cccchHHHHHHHHHHHHHHhcCCccChH
Q 036257           89 GTTFRRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCH-----IAGFCALCAIQKHVSRALQATGRILAPK  163 (418)
Q Consensus        89 ~~~~~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~-----~~~~~~l~~l~~~~~~~~~~~~~~v~p~  163 (418)
                      |..+.++++||.|+||||||||+||||+++|+||++++...+.....     ....++.+++..++..+|......++|.
T Consensus         1 g~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~   80 (367)
T 2y6e_A            1 GMHIQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPR   80 (367)
T ss_dssp             ---CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCH
T ss_pred             CCCCCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHH
Confidence            44567889999999999999999999999999999999765432211     1234578899999999998888899999


Q ss_pred             HHHHHHHhhhccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCC--------cch------------hhhhccccccceee
Q 036257          164 DLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPS--------ESA------------NAYEKSLVHKIFGG  223 (418)
Q Consensus       164 ~~~~~l~~~~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~--------~~~------------~~~~~s~i~~~F~g  223 (418)
                      .|+.+++...+.|.+++||||+|||.+||+.|++++.......        ...            .....++|.++|+|
T Consensus        81 ~~~~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G  160 (367)
T 2y6e_A           81 MFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHG  160 (367)
T ss_dssp             HHHHHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCE
T ss_pred             HHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCc
Confidence            9999999999999999999999999999999999875432110        000            11246789999999


Q ss_pred             EEEEEEEeCCCCCcccccccccccccccccc-------------------ccHHHHHhhccccccccCCCcccccccccc
Q 036257          224 RLRSQVKCTQCSYCSNKFDPFLDLSLEIAKA-------------------DSVLKALNNFTAAELLDGGEKEYHCQRCKQ  284 (418)
Q Consensus       224 ~~~~~~~C~~C~~~s~~~e~f~~l~l~i~~~-------------------~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~  284 (418)
                      ++.++++|..|++.+.+.++|++|+|+||..                   .+|+++|+.|+.+|.+++.+ .|.|++|++
T Consensus       161 ~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~~~L~~f~~~E~l~~~~-~~~C~~C~~  239 (367)
T 2y6e_A          161 LFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALRDCIELFTTMETLGEHD-PWYCPNCKK  239 (367)
T ss_dssp             EEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHHHHHHHHTSCEECCC-C-CEEETTTTE
T ss_pred             EEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHHHHHHHhcccccCCCCC-CccCCCCCC
Confidence            9999999999999999999999999999853                   58999999999999998654 499999999


Q ss_pred             cceeeEEEEEeeCCceEEEEEeeeecCCC-CCcccceeecCC-CCCCCCCcCCCCCCCceEEEEEEEEeeecCCCCCceE
Q 036257          285 KVRALKQLTVYKAPYVLTIHLKRFRAHDP-GQKNDKKVQFGS-TLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYY  362 (418)
Q Consensus       285 ~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~-~~K~~~~v~fp~-~Ldl~~~~~~~~~~~~~Y~L~avI~H~G~~~~~GHY~  362 (418)
                      ++.+.|+..|.++|+||+|||+||.++.. ..|+.+.|.||. .|||.+|+.........|+|+|||+|.| +.++|||+
T Consensus       240 ~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~  318 (367)
T 2y6e_A          240 HQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSARPYVYDLIAVSNHYG-AMGVGHYT  318 (367)
T ss_dssp             EECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSSCCCEEEEEEEEEEEC-SSSSCEEE
T ss_pred             CceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCCCCceEEEEEEeecCC-CCCCCeee
Confidence            99999999999999999999999998754 489999999996 7999999987766778999999999999 68999999


Q ss_pred             EEEECC-CCCEEEEeCCceeeecccccCCCCcEEEEEEEecCC
Q 036257          363 CFVRTS-SGMWYSLDDNRVVQVNERSVLEQKAYMLFYVRDRKN  404 (418)
Q Consensus       363 a~vr~~-~~~W~~~dD~~V~~v~~~~v~~~~aYil~Y~r~~~~  404 (418)
                      ||||.. +++||+|||+.|+++++++|...+||||||+|++..
T Consensus       319 a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~  361 (367)
T 2y6e_A          319 AYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDE  361 (367)
T ss_dssp             EEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC-
T ss_pred             EEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCC
Confidence            999985 789999999999999999999999999999998765
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Back     alignment and structure
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A Back     alignment and structure
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A Back     alignment and structure
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Back     alignment and structure
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Back     alignment and structure
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A Back     alignment and structure
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Back     alignment and structure
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} Back     alignment and structure
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus} Back     alignment and structure
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A* Back     alignment and structure
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 418
d2gfoa1348 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h 3e-60
d2hd5a1336 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy 6e-52
d2ayna1383 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy 2e-49
d1nbfa_347 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 2e-44
d1vjva_397 d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 4e-35
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  197 bits (501), Expect = 3e-60
 Identities = 84/333 (25%), Positives = 141/333 (42%), Gaps = 32/333 (9%)

Query: 98  GLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCA-----LCAIQKHVSRA 152
           GL NLGNTC++NS+LQCL     LA Y     +Q   + +                +   
Sbjct: 17  GLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKAL 76

Query: 153 LQATGRILAPKDLVSNLRCISRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANA- 211
                R ++PKD    +  I+  F    Q+D+ E ++ L++ +H+    +          
Sbjct: 77  WTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEEN 136

Query: 212 -------------------YEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIA 252
                                +S++  +F G+ +S V+C  C   S  F+ F+ LSL +A
Sbjct: 137 NDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLA 196

Query: 253 K--ADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRA 310
                ++   L  F+  E L    + ++C  C+ +  +LK++ ++K P VL +HLKRF  
Sbjct: 197 STSKCTLQDCLRLFSKEEKLTDNNR-FYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSY 255

Query: 311 HDPG--QKNDKKVQFGSTLDMKPFVSGSYEGDLKYTLYGVLVHHGWSTHSGHYYCFVR-T 367
                 +           LD+  +V G      KY L+ V  H+G     GHY  + +  
Sbjct: 256 DGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNA 314

Query: 368 SSGMWYSLDDNRVVQVNERSVLEQKAYMLFYVR 400
           +   W+  DD+ V  ++  SV    AY+LFY  
Sbjct: 315 ARQRWFKFDDHEVSDISVSSVKSSAAYILFYTS 347
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 Back     information, alignment and structure
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 Back     information, alignment and structure
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query418
d1nbfa_347 Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU 100.0
d2ayna1383 Ubiquitin carboxyl-terminal hydrolase 14 {Human (H 100.0
d2gfoa1348 Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho 100.0
d2hd5a1336 Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum 100.0
d1vjva_397 Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y 100.0
d1qmya_156 FMDV leader protease {Foot-and-mouth disease virus 90.01
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-59  Score=448.80  Aligned_cols=294  Identities=26%  Similarity=0.444  Sum_probs=251.1

Q ss_pred             ccCCCCccccCChhhHHHHHHHHhCCHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHhcCCccChHHHHHHHHhh
Q 036257           93 RRIGAGLENLGNTCFLNSVLQCLTYTEPLAAYLQSGKHQSSCHIAGFCALCAIQKHVSRALQATGRILAPKDLVSNLRCI  172 (418)
Q Consensus        93 ~~~~~GL~N~gNtCYlNSvLQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~v~p~~~~~~l~~~  172 (418)
                      .+|.+||.|+||||||||+||+|+++|+||++++......  .....+++++++.+|..+..+. .++.|..++..+.  
T Consensus         3 ~~G~vGL~NlGNTCy~NSvLQ~L~~~~~f~~~i~~~~~~~--~~~~~~~~~~l~~lf~~l~~~~-~~~~~~~~~~~~~--   77 (347)
T d1nbfa_           3 HTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG--DDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKSFG--   77 (347)
T ss_dssp             SSSCCCBCCCSSCHHHHHHHHHHHTSHHHHHHHHTSCCTT--CCTTTCHHHHHHHHHHHHHHCS-SCBCCHHHHHHTT--
T ss_pred             CCCCcCCeeCCcchHHHHHHHHHHcCHHHHHHHHhCCccC--CcccchHHHHHHHHHHHHhcCC-CCcChHHHHHhhc--
Confidence            4788999999999999999999999999999998755433  2334567889999888777654 5688888887764  


Q ss_pred             hccCCCCCcCcHHHHHHHHHHHHhhhcCCCCCCCcchhhhhccccccceeeEEEEEEEeCCCCCcccccccccccccccc
Q 036257          173 SRNFRNSRQEDAHEYMVNLLESMHKCCLPSGVPSESANAYEKSLVHKIFGGRLRSQVKCTQCSYCSNKFDPFLDLSLEIA  252 (418)
Q Consensus       173 ~~~f~~~~QqDa~Efl~~ll~~L~~~~~~~~~~~~~~~~~~~s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~  252 (418)
                      .+.|..+.||||+||+.+||+.|++++....         ..+++.++|+|++.+.++|..|++.+.+.++|+.|+|+++
T Consensus        78 ~~~~~~~~qqDa~Ef~~~ll~~l~~~~~~~~---------~~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~L~i~  148 (347)
T d1nbfa_          78 WETLDSFMQHDVQELCRVLLDNVENKMKGTC---------VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIK  148 (347)
T ss_dssp             CCGGGGGSCBCHHHHHHHHHHHHHHHHTTST---------TTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESSEEEECT
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHhhcc---------ccccccceeceEEEEeEEeCCccceeeeeccccccccccc
Confidence            3457789999999999999999999875432         2356999999999999999999999999999999999999


Q ss_pred             ccccHHHHHhhccccccccCCCcccccccccccceeeEEEEEeeCCceEEEEEeeeecCCC---CCcccceeecCCCCCC
Q 036257          253 KADSVLKALNNFTAAELLDGGEKEYHCQRCKQKVRALKQLTVYKAPYVLTIHLKRFRAHDP---GQKNDKKVQFGSTLDM  329 (418)
Q Consensus       253 ~~~~l~~~L~~~~~~e~~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~L~i~l~Rf~~~~~---~~K~~~~v~fp~~Ldl  329 (418)
                      ...++.++|..++..|.+++.+. +.|. |.+...+.++.+|.++|++|+|||+||.++..   ..|+...|.||+.|||
T Consensus       149 ~~~~~~~~l~~~~~~e~l~~~~~-~~~~-~~~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl  226 (347)
T d1nbfa_         149 GKKNIFESFVDYVAVEQLDGDNK-YDAG-EHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPL  226 (347)
T ss_dssp             TCCBHHHHHHHHTCCEEECGGGC-EECS-TTCEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSEEEC
T ss_pred             cccchhhhHHhhcchheeccccc-cccc-cCcceeccEEEEEEecCChheEeeeeeeeccccCcccccCceEeeeeeecc
Confidence            99999999999999999986443 5444 44567889999999999999999999997643   3699999999999999


Q ss_pred             CCCcCCCCC-CCceEEEEEEEEeeecCCCCCceEEEEEC-CCCCEEEEeCCceeeecccccCC---------------CC
Q 036257          330 KPFVSGSYE-GDLKYTLYGVLVHHGWSTHSGHYYCFVRT-SSGMWYSLDDNRVVQVNERSVLE---------------QK  392 (418)
Q Consensus       330 ~~~~~~~~~-~~~~Y~L~avI~H~G~~~~~GHY~a~vr~-~~~~W~~~dD~~V~~v~~~~v~~---------------~~  392 (418)
                      ++|+..... ...+|+|+|||+|.| +.++|||+||+|. .+++||+|||+.|+++++++|+.               .+
T Consensus       227 ~~~~~~~~~~~~~~Y~L~~vI~H~G-~~~~GHY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~  305 (347)
T d1nbfa_         227 DEFLQKTDPKDPANYILHAVLVHSG-DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTN  305 (347)
T ss_dssp             GGGBSSCCTTSCCEEEEEEEEEEEE-ETTEEEEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEE
T ss_pred             ccccccccccCccceeeEEEEEecC-CCCCCEEEEeeecCCCCEEEEEECCceEECCHHHHHHhhcCCCccccccCCCCC
Confidence            999876543 457899999999999 6799999999997 46799999999999999999974               26


Q ss_pred             cEEEEEEEecC
Q 036257          393 AYMLFYVRDRK  403 (418)
Q Consensus       393 aYil~Y~r~~~  403 (418)
                      ||||||+|++.
T Consensus       306 aYiLfY~r~~~  316 (347)
T d1nbfa_         306 AYMLVYIRESK  316 (347)
T ss_dssp             EEEEEEEEGGG
T ss_pred             EEEEEEEecCc
Confidence            99999999864
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]} Back     information, alignment and structure