Citrus Sinensis ID: 036262

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
GRSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGDINLVYNGIDDKGPAISSCSNVKPTLVGKQIPATCV
cccccEEEEEEEEcccccEEEEccccEEEEEEEEEEEccccEEEcccccccccccEEEEEEEcEEEEccccEEEEEEEccccccEEEEEEEEcEEEccccccEEEEEEEcccccccccccccEEEEEEEEEEEEEEEcccccEEEEccccccEEcEEEEEEEEEEcccccccccEEEEEEccccccEEEcccccc
cccccEEEEEEEEcccccEEEEcccccEEEEEEEEEcccccEEEEEccccccccccEEEEEEEEEEEcccccEEEEEcccccccEEEEEEEEEEEEEcccccEEEEcccccccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEEcccccccccEEEEEcccccEccEEcccccc
grsngieisnsiiatgddcvslgdgsqnvlvsdvscgpghgisvgslgkykkeedvVGLTVINCTftgtsngvriktwpdsedgkasnftfedlfmnnvenpividqeycphnqcnikvpsrvkisnvrfrnirgtsltKEAVRIVCskeipcqnveigdinlvyngiddkgpaisscsnvkptlvgkqipatcv
grsngieiSNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVInctftgtsngvriktwpdsedGKASNFTFEDLFMNNVENPIVIDQEYCPHNQcnikvpsrvkisnvrfrnirgtsltkeavRIVCSkeipcqnveiGDINLVYNGIDDKGPAIsscsnvkptlvgkqipatcv
GRSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGDINLVYNGIDDKGPAISSCSNVKPTLVGKQIPATCV
*********NSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGDINLVYNGIDDKGPAISSCSNV**************
*RSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQ**I**PSRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGDINLVYNGIDDKGPAISSCSNVKPTLVGKQIPATCV
GRSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGDINLVYNGIDDKGPAISSCSNVKPTLVGKQIPATCV
**SNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGDINLVYNGIDDKGPAISSCSNVKPTLVGKQIPATCV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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GRSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGDINLVYNGIDDKGPAISSCSNVKPTLVGKQIPATCV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query195 2.2.26 [Sep-21-2011]
P24548362 Exopolygalacturonase (Fra N/A no 0.984 0.530 0.623 9e-69
Q6H9K0377 Exopolygalacturonase (Fra N/A no 0.974 0.503 0.609 2e-67
P49063444 Exopolygalacturonase clon no no 0.984 0.432 0.572 1e-62
P35337397 Polygalacturonase OS=Bras N/A no 0.989 0.486 0.586 1e-61
Q39766407 Polygalacturonase OS=Goss N/A no 0.979 0.469 0.536 3e-58
Q05967396 Polygalacturonase OS=Nico N/A no 0.979 0.482 0.549 9e-58
Q39786407 Polygalacturonase OS=Goss N/A no 0.979 0.469 0.536 1e-57
Q40312421 Polygalacturonase OS=Medi N/A no 0.938 0.434 0.526 5e-54
P49062422 Exopolygalacturonase clon no no 0.820 0.379 0.545 6e-44
P48979393 Polygalacturonase OS=Prun N/A no 0.969 0.480 0.476 3e-42
>sp|P24548|PGLR_OENOR Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1 Back     alignment and function desciption
 Score =  259 bits (661), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 121/194 (62%), Positives = 153/194 (78%), Gaps = 2/194 (1%)

Query: 1   GRSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLT 60
           GRS+G+ I N+ I TGDDC+SLGDGS+N+ +++++CGPGHGISVGSLG+YK EE VVG+ 
Sbjct: 163 GRSDGVNIINTEIKTGDDCISLGDGSKNINITNITCGPGHGISVGSLGRYKNEESVVGIY 222

Query: 61  VINCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVP 120
           V NCT TG+ NGVRIKTWP SE G+AS   F+D+ MN+V  PI+IDQ YCP+NQC  +VP
Sbjct: 223 VKNCTITGSQNGVRIKTWPKSEPGEASEMHFQDITMNSVGTPILIDQGYCPYNQCTAEVP 282

Query: 121 SRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGDINLVYNGIDDKGPAISSCSN 180
           S VK+S + F+NI+GTS TKEAV++VCSK  PC  VE+ DI+L Y+G    GPA S C N
Sbjct: 283 SSVKLSKISFKNIKGTSTTKEAVKLVCSKSFPCNGVELADIDLTYSG--KGGPATSVCEN 340

Query: 181 VKPTLVGKQIPATC 194
           +KPT+ GKQIPA C
Sbjct: 341 IKPTIKGKQIPAIC 354
May function in depolymerizing pectin during pollen development, germination, and tube growth. Acts as an exo-polygalacturonase.
Oenothera organensis (taxid: 3945)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 6EC: 7
>sp|Q6H9K0|PGLR2_PLAAC Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1 Back     alignment and function description
>sp|P49063|PGLR2_ARATH Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=1 SV=2 Back     alignment and function description
>sp|P35337|PGLR_BRANA Polygalacturonase OS=Brassica napus PE=2 SV=1 Back     alignment and function description
>sp|Q39766|PGLR_GOSBA Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|Q05967|PGLR_TOBAC Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1 Back     alignment and function description
>sp|Q39786|PGLR_GOSHI Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|Q40312|PGLR_MEDSA Polygalacturonase OS=Medicago sativa PE=2 SV=1 Back     alignment and function description
>sp|P49062|PGLR1_ARATH Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1 Back     alignment and function description
>sp|P48979|PGLR_PRUPE Polygalacturonase OS=Prunus persica PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
225446736 395 PREDICTED: polygalacturonase [Vitis vini 0.984 0.486 0.649 1e-70
225446732 395 PREDICTED: polygalacturonase [Vitis vini 0.984 0.486 0.654 2e-70
302143491 1080 unnamed protein product [Vitis vinifera] 0.969 0.175 0.654 4e-70
225447625 395 PREDICTED: polygalacturonase [Vitis vini 0.989 0.488 0.641 3e-69
302143489 414 unnamed protein product [Vitis vinifera] 0.948 0.446 0.663 3e-68
296084975 452 unnamed protein product [Vitis vinifera] 0.958 0.413 0.645 9e-68
359485475 312 PREDICTED: polygalacturonase [Vitis vini 0.933 0.583 0.657 2e-67
129941 362 RecName: Full=Exopolygalacturonase; Shor 0.984 0.530 0.623 5e-67
302121712 398 polygalacturonase [Hypericum perforatum] 0.974 0.477 0.623 3e-66
302143488 345 unnamed protein product [Vitis vinifera] 0.897 0.507 0.666 4e-66
>gi|225446736|ref|XP_002282594.1| PREDICTED: polygalacturonase [Vitis vinifera] Back     alignment and taxonomy information
 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 126/194 (64%), Positives = 156/194 (80%), Gaps = 2/194 (1%)

Query: 1   GRSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLT 60
           GRS+GI I++S I TGDDCVS+GDGS+ + +  V+CGPGHGISVGSLGKY  EE VVG++
Sbjct: 203 GRSSGINITDSTIETGDDCVSIGDGSEQINIQRVTCGPGHGISVGSLGKYPNEEPVVGIS 262

Query: 61  VINCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVP 120
           V NCT T T NGVR+KTWP S  G AS   FED+ MNNV NPI+IDQEYCPHNQCN+K P
Sbjct: 263 VKNCTLTNTQNGVRVKTWPASHQGTASEMHFEDIVMNNVGNPIIIDQEYCPHNQCNLKSP 322

Query: 121 SRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGDINLVYNGIDDKGPAISSCSN 180
           SR+KISNV FRNIRGT+ T+ AV+++CS+ +PC +VE+GDINL YNG  ++GPA+S C N
Sbjct: 323 SRIKISNVSFRNIRGTTSTQVAVKLICSQGVPCHDVELGDINLEYNG--NEGPAMSQCKN 380

Query: 181 VKPTLVGKQIPATC 194
           +KP L+G Q+P  C
Sbjct: 381 IKPNLLGVQLPRIC 394

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225446732|ref|XP_002282573.1| PREDICTED: polygalacturonase [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143491|emb|CBI22052.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225447625|ref|XP_002274125.1| PREDICTED: polygalacturonase [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143489|emb|CBI22050.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|296084975|emb|CBI28390.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359485475|ref|XP_002282563.2| PREDICTED: polygalacturonase [Vitis vinifera] Back     alignment and taxonomy information
>gi|129941|sp|P24548.1|PGLR_OENOR RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Galacturan 1,4-alpha-galacturonidase; AltName: Full=Pectinase gi|256552|gb|AAB23476.1| polygalacturonase homolog {clone P22} [Oenothera organensis, pollen, Peptide, 362 aa] Back     alignment and taxonomy information
>gi|302121712|gb|ADK92878.1| polygalacturonase [Hypericum perforatum] Back     alignment and taxonomy information
>gi|302143488|emb|CBI22049.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query195
UNIPROTKB|Q6H9K0377 plaa2 "Exopolygalacturonase" [ 0.974 0.503 0.609 3.2e-65
TAIR|locus:2164773395 AT5G48140 [Arabidopsis thalian 0.984 0.486 0.594 8.8e-63
TAIR|locus:2088252445 AT3G14040 [Arabidopsis thalian 0.984 0.431 0.577 3e-62
TAIR|locus:2077437401 AT3G07840 [Arabidopsis thalian 0.984 0.478 0.6 1e-61
TAIR|locus:2077442444 AT3G07850 [Arabidopsis thalian 0.984 0.432 0.572 1.6e-61
TAIR|locus:2077412397 AT3G07830 [Arabidopsis thalian 0.984 0.483 0.594 5.5e-61
TAIR|locus:2077402391 AT3G07820 [Arabidopsis thalian 0.984 0.491 0.584 7.1e-61
TAIR|locus:2046555 664 AT2G33160 [Arabidopsis thalian 0.984 0.289 0.522 1.7e-50
TAIR|locus:2032125404 AT1G78400 [Arabidopsis thalian 0.989 0.477 0.515 1.2e-49
TAIR|locus:2141877414 AT4G18180 [Arabidopsis thalian 0.989 0.466 0.482 5.2e-49
UNIPROTKB|Q6H9K0 plaa2 "Exopolygalacturonase" [Platanus x acerifolia (taxid:140101)] Back     alignment and assigned GO terms
 Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
 Identities = 117/192 (60%), Positives = 152/192 (79%)

Query:     1 GRSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLT 60
             G S G+ I+N+ IATGDDC+S+G GSQNV ++ V+CGPGHGIS+GSLG+Y  E++V G+T
Sbjct:   184 GISKGVTITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEVRGIT 243

Query:    61 VINCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVP 120
             V  CTF+GT NGVR+KTWP+S  G A++ TF+DL MNNV+NP+++DQEYCP+ QC+ + P
Sbjct:   244 VKGCTFSGTMNGVRVKTWPNSPPGAATDLTFQDLTMNNVQNPVILDQEYCPYGQCSRQAP 303

Query:   121 SRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGDINLVYNGIDDKGPAISSCSN 180
             SR+K+SN+ F NIRGTS  K AV I CS  +PC N++IG+INL Y G    GPA S+CSN
Sbjct:   304 SRIKLSNINFNNIRGTSTGKVAVVIACSHGMPCSNMKIGEINLSYRGAG--GPATSTCSN 361

Query:   181 VKPTLVGKQIPA 192
             VKPT  GKQ+PA
Sbjct:   362 VKPTFSGKQVPA 373
GO:0005575 "cellular_component" evidence=ND
GO:0019863 "IgE binding" evidence=IDA
GO:0045490 "pectin catabolic process" evidence=IDA
GO:0047911 "galacturan 1,4-alpha-galacturonidase activity" evidence=IDA
TAIR|locus:2164773 AT5G48140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088252 AT3G14040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077437 AT3G07840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077442 AT3G07850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077412 AT3G07830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077402 AT3G07820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046555 AT2G33160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032125 AT1G78400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141877 AT4G18180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00018823001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (395 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 1e-76
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 8e-63
PLN02155394 PLN02155, PLN02155, polygalacturonase 4e-54
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 9e-50
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 1e-44
PLN03010409 PLN03010, PLN03010, polygalacturonase 4e-39
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 5e-37
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 3e-07
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information 
 Score =  234 bits (599), Expect = 1e-76
 Identities = 102/194 (52%), Positives = 137/194 (70%), Gaps = 3/194 (1%)

Query: 2   RSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTV 61
           RS+G+ IS+S I TGDDC+S+G G+  V ++ + CGPGHGISVGSLG+Y  E DV GL V
Sbjct: 212 RSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVV 271

Query: 62  INCTFTGTSNGVRIKTWPDSED-GKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVP 120
            +CTFTGT+NG+RIKTW +S     A+N TFE++ MNNV NPI+IDQ+YCP   C  K P
Sbjct: 272 RDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYP 331

Query: 121 SRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGDINLVYNGIDDKGPAISSCSN 180
           S V +S++ F+NIRGTS ++ AV + CS+ +PCQ V + D++L  +    +G   SSC N
Sbjct: 332 SGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLS--SGEGGTSSSCEN 389

Query: 181 VKPTLVGKQIPATC 194
           V+   +G QIP  C
Sbjct: 390 VRAKYIGTQIPPPC 403

Length = 404
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 195
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02155394 polygalacturonase 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN03010409 polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.86
PLN02218431 polygalacturonase ADPG 99.62
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.61
PLN02155394 polygalacturonase 99.58
PLN02793443 Probable polygalacturonase 99.57
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.55
PLN03003456 Probable polygalacturonase At3g15720 99.54
PLN03010409 polygalacturonase 99.53
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.0
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.78
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 97.86
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 97.67
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.21
smart00656190 Amb_all Amb_all domain. 97.13
smart00656190 Amb_all Amb_all domain. 97.04
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 96.79
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 96.78
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 96.76
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 96.64
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 96.23
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 96.1
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 96.05
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 95.93
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 95.33
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 95.29
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 94.87
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 94.79
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 89.35
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 87.64
PRK10123 464 wcaM putative colanic acid biosynthesis protein; P 86.27
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 83.36
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information 
Probab=100.00  E-value=1.6e-47  Score=336.65  Aligned_cols=193  Identities=39%  Similarity=0.684  Sum_probs=173.1

Q ss_pred             CccccEEEEeeEEecCCceEEecCCcccEEEEeEEEcCCCcEEEeecCccCCCCCEEEEEEEeeEEeCCccceEEEecCC
Q 036262            1 GRSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPD   80 (195)
Q Consensus         1 ~~s~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~iKs~~g   80 (195)
                      .+|+||+|+||+|++||||||+|+|++||+|+||+|.+||||+|||+|+++..+.|+||+|+||+|.++.+|+|||||.|
T Consensus       194 ~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G  273 (456)
T PLN03003        194 GASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQG  273 (456)
T ss_pred             cCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCC
Confidence            36899999999999999999999999999999999999999999999987666889999999999999999999999998


Q ss_pred             CCCCcEEeEEEEeEEEccCCccEEEEeecCCCCC---CCCCCCCceEEEEEEEEeEEEEeccCceEEEEecCCCCEEcEE
Q 036262           81 SEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQ---CNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVE  157 (195)
Q Consensus        81 ~~~G~i~nI~~~ni~~~~~~~~i~i~~~y~~~~~---~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~~~~p~~ni~  157 (195)
                      + +|+++||+|+||+|+++++||.|+++|.+...   |. ..++.+.|+||+|+||+|+.....++.|.|+++.||+||+
T Consensus       274 g-~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~-~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~  351 (456)
T PLN03003        274 G-SGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKD-RKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSERVPCTEIF  351 (456)
T ss_pred             C-CeEEEEEEEEeEEecCccceEEEEcccCCCCCCCccc-CCCCCcEEEeEEEEeEEEEeCccceEEEEeCCCCCeeeEE
Confidence            6 79999999999999999999999999975432   22 2345789999999999999887889999999999999999


Q ss_pred             EEeEEEEeCCCCCCCCCceeeeeecccccceeeCCCCC
Q 036262          158 IGDINLVYNGIDDKGPAISSCSNVKPTLVGKQIPATCV  195 (195)
Q Consensus       158 ~~nv~i~~~~g~~~~~~~~~C~~~~~~~~~~~~p~~c~  195 (195)
                      |+||+|+...++......+.|+|++|...++.+|.+|+
T Consensus       352 l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~  389 (456)
T PLN03003        352 LRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECL  389 (456)
T ss_pred             EEEEEEEecCCCCCCccCcEEeccccccCceECCCCcc
Confidence            99999998742211357899999999999988888996

>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
1nhc_A336 Structural Insights Into The Processivity Of Endopo 1e-09
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 1e-09
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 2e-09
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 2e-09
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 3e-08
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 5e-07
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 7e-07
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 9e-06
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure 
Iteration: 1

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 96/183 (52%), Gaps = 15/183 (8%)
Query: 2   RSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTV 61
            S G+ IS + +   DDC+++  G +++  +  +C  GHG+S+GS+G  + +  V  +T+
Sbjct: 160 ESTGVYISGATVKNQDDCIAINSG-ESISFTGGTCSGGHGLSIGSVGG-RDDNTVKNVTI 217
Query: 62  INCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNVEN-PIVIDQEYCPHNQCNIKVP 120
            + T + ++NGVRIKT    E G  S  T+ ++ ++ + +  IVI+Q+Y   N      P
Sbjct: 218 SDSTVSNSANGVRIKTIY-KETGDVSEITYSNIQLSGITDYGIVIEQDY--ENGSPTGTP 274
Query: 121 SR-VKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGDINLVYNGIDDKGPAISS-C 178
           S  + I++V    + GT L  +A ++     I C +    D    ++G+D  G   S  C
Sbjct: 275 STGIPITDVTVDGVTGT-LEDDATQVY----ILCGDGSCSD--WTWSGVDLSGGKTSDKC 327
Query: 179 SNV 181
            NV
Sbjct: 328 ENV 330
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query195
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 7e-65
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 6e-59
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 3e-58
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 5e-58
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 6e-58
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 3e-57
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 3e-55
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 4e-54
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 2e-39
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 5e-37
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 1e-10
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 7e-09
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 1e-07
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 1e-06
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  204 bits (521), Expect = 7e-65
 Identities = 39/195 (20%), Positives = 78/195 (40%), Gaps = 14/195 (7%)

Query: 3   SNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVI 62
            + I + +  +   D+CV++   + N+LV  + C    G ++GSLG      D+      
Sbjct: 183 GSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTDVTDI---VYR 239

Query: 63  NCTFTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSR 122
           N     ++    IK+   S  G  SN   E+   +     + ID  +             
Sbjct: 240 NVYTWSSNQMYMIKSNGGS--GTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVA---GDG 294

Query: 123 VKISNVRFRNIRGTSL---TKEAVRIVCSKEIPCQNVEIGDINLVYNGIDDKGPAISSCS 179
           V+++N+  +N +GT     T+  +R+VCS   PC ++ + DI +           +  C 
Sbjct: 295 VQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTES---GSSELYLCR 351

Query: 180 NVKPTLVGKQIPATC 194
           +   +    +  ++ 
Sbjct: 352 SAYGSGYCLKDSSSH 366
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.92
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.9
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.9
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.81
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.79
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.78
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.78
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.77
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.76
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.76
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.75
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.74
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.73
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.71
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.71
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.64
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.58
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.48
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.41
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.19
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.07
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 98.94
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.73
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 98.72
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.32
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.45
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.9
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 96.82
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.75
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.74
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.73
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 96.65
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 96.46
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.39
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.04
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.83
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 95.81
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.81
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 95.75
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.74
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 95.66
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 95.55
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 95.45
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.34
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 95.32
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 95.27
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 94.22
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 93.89
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 90.69
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 89.18
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 88.96
2inu_A410 Insulin fructotransferase; right-handed parallel b 87.25
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 86.69
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 86.01
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 82.33
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
Probab=100.00  E-value=2.2e-39  Score=279.72  Aligned_cols=172  Identities=26%  Similarity=0.521  Sum_probs=152.0

Q ss_pred             CccccEEEEeeEEecCCceEEecCCcccEEEEeEEEcCCCcEEEeecCccCCCCCEEEEEEEeeEEeCCccceEEEecCC
Q 036262            1 GRSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPD   80 (195)
Q Consensus         1 ~~s~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~iKs~~g   80 (195)
                      .+|+||+|+||+|+++||||++|++ +||+|+||+|+++|||+|||+|++ +.+.|+||+|+||+|.++.+|+|||+|++
T Consensus       185 ~~s~nV~I~n~~i~~gDDcIaiksg-~nI~i~n~~~~~ghGisiGS~G~~-~~~~v~nV~v~n~~~~~t~~GirIKt~~g  262 (362)
T 1czf_A          185 GNSVGVNIIKPWVHNQDDCLAVNSG-ENIWFTGGTCIGGHGLSIGSVGDR-SNNVVKNVTIEHSTVSNSENAVRIKTISG  262 (362)
T ss_dssp             CSCEEEEEESCEEECSSCSEEESSE-EEEEEESCEEESSCCEEEEEECSS-SCCEEEEEEEEEEEEEEEEEEEEEEEETT
T ss_pred             cCcceEEEEeeEEecCCCEEEEeCC-eEEEEEEEEEeCCceeEEeecccc-CCCCEEEEEEEeeEEECCceEEEEEEeCC
Confidence            3789999999999999999999996 899999999999999999999876 56899999999999999999999999998


Q ss_pred             CCCCcEEeEEEEeEEEccCC-ccEEEEeecCCCCCCCCCCCCceEEEEEEEEeEEEEecc-CceEEEEecCCCCEEcEEE
Q 036262           81 SEDGKASNFTFEDLFMNNVE-NPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLT-KEAVRIVCSKEIPCQNVEI  158 (195)
Q Consensus        81 ~~~G~i~nI~~~ni~~~~~~-~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~-~~~~~i~g~~~~p~~ni~~  158 (195)
                      + +|.|+||+|+||+|+++. +||.|++.|.+...+. .+.+.+.|+||+|+||+++.+. ..++.|.|. +.||+||+|
T Consensus       263 ~-~G~v~nI~~~ni~~~~v~~~~i~I~~~Y~~~~~~~-~p~~~~~i~nI~~~ni~gt~~~~~~~i~i~c~-~~~c~ni~~  339 (362)
T 1czf_A          263 A-TGSVSEITYSNIVMSGISDYGVVIQQDYEDGKPTG-KPTNGVTIQDVKLESVTGSVDSGATEIYLLCG-SGSCSDWTW  339 (362)
T ss_dssp             C-CEEEEEEEEEEEEEEEEEEEEEEEEEEEETTEECS-CCCSSEEEEEEEEEEEEEEECTTSEEEEEECC-TTTEEEEEE
T ss_pred             C-CceEeeEEEEeEEEECcccccEEEEEecCCCCCCC-CCCCCceEEEEEEEEEEEEecCCceEEEEEeC-CCcCcCEEE
Confidence            5 799999999999999997 7999999998643222 2235689999999999999975 578999998 789999999


Q ss_pred             EeEEEEeCCCCCCCCCceeeeeecc
Q 036262          159 GDINLVYNGIDDKGPAISSCSNVKP  183 (195)
Q Consensus       159 ~nv~i~~~~g~~~~~~~~~C~~~~~  183 (195)
                      +||+|++.      .....|+|++.
T Consensus       340 ~nv~i~~~------~~~~~C~n~~~  358 (362)
T 1czf_A          340 DDVKVTGG------KKSTACKNFPS  358 (362)
T ss_dssp             EEEEEESS------BCCSCCBSCCT
T ss_pred             EeEEEEcC------CCcccCcCCCC
Confidence            99999852      24468999984
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 195
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 1e-44
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 3e-37
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-35
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 7e-35
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 7e-35
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 2e-31
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 5e-31
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 3e-28
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  150 bits (381), Expect = 1e-44
 Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 14/180 (7%)

Query: 6   IEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCT 65
           I + +  +   D+CV++   + N+LV  + C    G ++GSLG      D+      N  
Sbjct: 186 IWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTDVTDI---VYRNVY 242

Query: 66  FTGTSNGVRIKTWPDSEDGKASNFTFEDLFMNNVENPIVIDQEYCPHNQCNIKVPSRVKI 125
              ++    IK+   S  G  SN   E+   +     + ID  +             V++
Sbjct: 243 TWSSNQMYMIKSNGGS--GTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVA---GDGVQL 297

Query: 126 SNVRFRNIRGTSL---TKEAVRIVCSKEIPCQNVEIGDINLVYNGIDDKGPAISSCSNVK 182
           +N+  +N +GT     T+  +R+VCS   PC ++ + DI +           +  C +  
Sbjct: 298 NNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTES---GSSELYLCRSAY 354
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query195
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.9
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.69
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.66
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.62
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.62
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.61
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.57
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.56
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.12
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.9
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 95.89
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.69
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 95.62
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.19
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 94.85
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 94.82
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 94.4
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 93.78
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 93.59
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 93.07
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 92.85
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 92.55
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 91.92
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 86.88
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 83.12
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=100.00  E-value=4.5e-40  Score=279.54  Aligned_cols=171  Identities=27%  Similarity=0.507  Sum_probs=153.2

Q ss_pred             ccccEEEEeeEEecCCceEEecCCcccEEEEeEEEcCCCcEEEeecCccCCCCCEEEEEEEeeEEeCCccceEEEecCCC
Q 036262            2 RSNGIEISNSIIATGDDCVSLGDGSQNVLVSDVSCGPGHGISVGSLGKYKKEEDVVGLTVINCTFTGTSNGVRIKTWPDS   81 (195)
Q Consensus         2 ~s~nV~I~n~~i~~gDD~iaiksg~~nI~I~nc~~~~g~Gi~iGS~g~~~~~~~i~nI~~~n~~i~~~~~gi~iKs~~g~   81 (195)
                      +|+||+|+||+|+++|||||+|++ +||+|+||+|+++||++|||+|.. +.+.|+||+|+||+|.++.+|+|||||.++
T Consensus       165 ~s~nV~I~n~~i~~gDDcIaiks~-~ni~i~n~~c~~ghG~sigslG~~-~~~~v~nV~v~n~~~~~t~~GirIKt~~g~  242 (339)
T d1ia5a_         165 TSTYVTISGATVYNQDDCVAVNSG-ENIYFSGGYCSGGHGLSIGSVGGR-SDNTVKNVTFVDSTIINSDNGVRIKTNIDT  242 (339)
T ss_dssp             SCEEEEEESCEEECSSCSEEESSE-EEEEEESCEEESSSCEEEEEECSS-SCCEEEEEEEEEEEEESCSEEEEEEEETTC
T ss_pred             CCCeEEEeeeEEEcCCCeEEecCc-cEEEEEEeEEeccccceecccccC-ccccEEEEEEECCcccCCcceeEEeeeCCC
Confidence            689999999999999999999995 799999999999999999999865 357899999999999999999999999986


Q ss_pred             CCCcEEeEEEEeEEEccC-CccEEEEeecCCCCCCCCCCCCceEEEEEEEEeEEEEeccCceEEEEecCCCCEEcEEEEe
Q 036262           82 EDGKASNFTFEDLFMNNV-ENPIVIDQEYCPHNQCNIKVPSRVKISNVRFRNIRGTSLTKEAVRIVCSKEIPCQNVEIGD  160 (195)
Q Consensus        82 ~~G~i~nI~~~ni~~~~~-~~~i~i~~~y~~~~~~~~~~~~~~~i~nIt~~ni~~~~~~~~~~~i~g~~~~p~~ni~~~n  160 (195)
                       +|.|+||+|+||+|+++ ++||.|+++|.+...++   ++.+.|+||+|+||+++.....+..+.|.++.||+||+|+|
T Consensus       243 -~G~v~nV~f~ni~~~~v~~~pI~I~~~Y~~~~~~~---~~~v~i~nI~~~Ni~gt~~~~~~~~~~~~~~~p~~ni~~~n  318 (339)
T d1ia5a_         243 -TGSVSDVTYKDITLTSIAKYGIVVQQNYGDTSSTP---TTGVPITDFVLDNVHGSVVSSGTNILISCGSGSCSDWTWTD  318 (339)
T ss_dssp             -CCEEEEEEEEEEEEEEESSEEEEEEEEETCTTSCC---CSSSCEEEEEEEEEEEEECTTSEEEEEECCTTCEEEEEEEE
T ss_pred             -CEEEEEEEEEEEEEeccccccEEEEeecCCCCCCC---CCCcEEEeEEEEeEEEEecccCceEEEeCCCCCEeceEEEe
Confidence             79999999999999998 57999999998765533   45678999999999999887888889999999999999999


Q ss_pred             EEEEeCCCCCCCCCceeeeeeccc
Q 036262          161 INLVYNGIDDKGPAISSCSNVKPT  184 (195)
Q Consensus       161 v~i~~~~g~~~~~~~~~C~~~~~~  184 (195)
                      |+|++.      .....|+|+++.
T Consensus       319 V~itg~------~~~~~C~nv~~~  336 (339)
T d1ia5a_         319 VSVSGG------KTSSKCTNVPSG  336 (339)
T ss_dssp             EEEESS------BCCSCCBSCCTT
T ss_pred             EEEcCC------CcceEeECCCcc
Confidence            999732      356789999874
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure