Citrus Sinensis ID: 036281

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-
Protein Sequence
MEREIRVKTLGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVYCTYKNPDDRDPFDDLITYFSVFPDRTLTDLHFQDLEPIMRGIHIGPYDGIFCLLKSHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRDLGITGLWFSVHILKESLIRMKDEDM
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHcccccHHHHHHHHcccHHHHHHcccHHHHHHHHcccccccEEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEcccEEEEEEcccccEEEcccccccccccccccEEEEEEEEccccccEEEEEEEEEEcccccccccccEEEEEEcccccEEEccccccccEEEEccccEEEEccEEEEEEEcccccEEEEEEEccccEEEEEcccccccccccccccccccEEEEEccEEEEEEEcccccEEEEEEEccccEEEEEEEcccccccEEEEEEEccEEEEEEcccEEEEEEccccEEEEEEEEccEEEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEEEEEccccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEcccccEEEEccccccEEEccccccccccccccEEEEEEEccccccccEEEEEEEEEcccccccccccEEEEEEEEcccccEEEEcccccccccccccccEEEEcEEEEEEEcccccEEEEEEEcccccEEEcccccccccccccccccEEEEEEEEccEEEEEEEcccccEEEEEEEEccEcEEEEEEccccccccEEEEEEccEEEEEccccEEEEEEccccEEEEEEEEEEEEEEEEEEEEEEEcccccc
Coil and Loop (DISEMBL)
MEREIRVKTLGDLSDDMMIETLSRLPVKSLMRFkcvciswcdlvkdpnfiykhlkrddnmRLMVYCtyknpddrdpfddlityfsvfpdrtltdlhfqdlepimrgihigpydGIFCLLKSHTLINLWNVSlneyrglpecrprlpcytrthYANIALGLDLVTGDFKLVLILTLWndqrdsfhdfshvavynfstnswrdlKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVfqeikgpsvpqtttyyqsvktpwmlgtydDCLSLLYSDKFAHSFELWIMKGGfwikhltfgpfietyqplgfwrkdefllessdkRVILYDSRYHEMRDLGITGLWFSVHILKESLIRMKDEDM
Flexible Loop (DISEMBL)
mereirvktlgdlsddmmiETLSRLPVKSLMRFKCVCIswcdlvkdpNFIYKhlkrddnmrLMVYCTYknpddrdpfdDLITYFSVFPDRTLTDLHFQDLEPIMRGIHIGPYDGIFCLLKSHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYnfstnswrdlKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRDLGITGLWFSVHILKESlirmkdedm
Low Complexity Region (SEG)
MEREIRVKTLGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVYCTYKNPDDRDPFDDLITYFSVFPDRTLTDLHFQDLEPIMRGIHIGPYDGIFCLLKSHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRDLGITGLWFSVHILKESLIRMKDEDM
Disordered region (IsUnstruct)
***************DMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVYCTYKNPDDRDPFDDLITYFSVFPDRTLTDLHFQDLEPIMRGIHIGPYDGIFCLLKSHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRDLGITGLWFSVHILKESLI*******
Disordered Region (DISOPRED)
****************MMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVYCTYKNPDDRDPFDDLITYFSVFPDRTLTDLHFQDLEPIMRGIHIGPYDGIFCLLKSHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRDLGITGLWFSVHILKESLIRMK****
Disordered Region (DISEMBL)
MEREIRVKTLGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVYCTYKNPDDRDPFDDLITYFSVFPDRTLTDLHFQDLEPIMRGIHIGPYDGIFCLLKSHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRDLGITGLWFSVHILKESLIRMKDEDM
Disordered Region (DISPRO)
*********LGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVYCTYKNPDDRDPFDDLITYFSVFPDRTLTDLHFQDLEPIMRGIHIGPYDGIFCLLKSHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRDLGITGLWFSVHILKESLIRMK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEREIRVKTLGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVYCTYKNPDDRDPFDDLITYFSVFPDRTLTDLHFQDLEPIMRGIHIGPYDGIFCLLKSHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRDLGITGLWFSVHILKESLIRMKDEDM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	371	2.2.26 [Sep-21-2011]
Q8GXC7	427	F-box/kelch-repeat protei	yes	no	0.886	0.770	0.233	2e-17
Q9C9Y4	369	F-box protein At3g08750 O	no	no	0.733	0.737	0.266	1e-12
Q9LU24	360	Putative F-box protein At	no	no	0.700	0.722	0.280	5e-12
Q9CAE7	370	Putative F-box protein At	no	no	0.582	0.583	0.272	2e-11
Q9LUP5	388	F-box/kelch-repeat protei	no	no	0.776	0.742	0.238	1e-10
Q4PSN6	410	F-box/WD-40 repeat-contai	no	no	0.849	0.768	0.234	1e-09
Q9SU30	413	F-box protein CPR30 OS=Ar	no	no	0.862	0.774	0.242	1e-09
Q9SAB5	363	Putative F-box/LRR-repeat	no	no	0.722	0.738	0.258	2e-09
O49421	411	F-box protein At4g19940 O	no	no	0.630	0.569	0.256	9e-09
Q9LUP4	396	Putative F-box/kelch-repe	no	no	0.760	0.712	0.240	2e-08

>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 170/406 (41%), Gaps = 77/406 (18%)

Query: 13  LSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLK---RDDNMRLM------ 63
           L  +++ E L RLP KS+ RF+CV   +C L  DP F   HL    R++++R +      
Sbjct: 36  LPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIV 95

Query: 64  ----------------------VYCTYKNPDDRDPFDDLITYFSVFPDRTLTDLHFQDLE 101
                                 V   Y   DD   F ++I        R     H  D  
Sbjct: 96  SSHNLYSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMI--------RNYVGDHLYDDR 147

Query: 102 PIMRGIH-----------IGPYDGIFCLLKSHTLINLWNVSLNEYRGLPEC-RPRLPCYT 149
            +M  ++           +G  +G+ C+      + L+N +  + + LPE  RP+   Y 
Sbjct: 148 RVMLKLNAKSYRRNWVEIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYE 207

Query: 150 RTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGFEMRF 209
           R ++     G D +T D+KLV ++    D  D+       +VY+   +SWR +       
Sbjct: 208 RDNFQTYGFGFDGLTDDYKLVKLVATSEDILDA-------SVYSLKADSWRRICNLNYEH 260

Query: 210 DYMVDRIY--NVYLNGYCYWVVCRPDYS-KAILAFSMSNEVFQEIKGPSVPQTTTYYQSV 266
           +   D  Y   V+ NG  +WV     ++ + ++AF +  E F+E+  P   +  ++  S 
Sbjct: 261 N---DGSYTSGVHFNGAIHWVFTESRHNQRVVVAFDIQTEEFREMPVPDEAEDCSHRFS- 316

Query: 267 KTPWMLGTYDDCLSLLYSDKFAHSFELWIM----KGGFWIKHLTFGPFIETYQPLGFWRK 322
              +++G+ +  L ++ S    H  ++W+M    +   W + +       + +PL   + 
Sbjct: 317 --NFVVGSLNGRLCVVNSCYDVHD-DIWVMSEYGEAKSWSR-IRINLLYRSMKPLCSTKN 372

Query: 323 DEFLLESSDKRVILYDSRYHEMRDLGITGL----WFSVHILKESLI 364
           DE +L   D  ++LY+   +   +LGI G+     F  +   ESLI
Sbjct: 373 DEEVLLELDGDLVLYNFETNASSNLGICGVKLSDGFEANTYVESLI 418

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9Y4|FB136_ARATH F-box protein At3g08750 OS=Arabidopsis thaliana GN=At3g08750 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 140/312 (44%), Gaps = 40/312 (12%)

Query: 10  LGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVYCTYK 69
           L  L  +++ E L ++P +SL+RFK  C  W +L+ +  F+Y HL      R +   TY 
Sbjct: 9   LPSLPFELIEEILYKIPAESLIRFKSTCKKWYNLITEKRFMYNHLDHYSPERFIR--TY- 65

Query: 70  NPDDRDPFDDLITYFSVFPDRTLTDLHFQDLEPIMRGIHIGPYDGI-FCLLKS-HTLINL 127
           +    DP  ++++  ++ PD       F+DL PI   +H    DG+  C  +     + +
Sbjct: 66  DQQIIDPVTEILSD-ALIPD------EFRDLYPIYSMVHC---DGLMLCTCRKWDNSLAV 115

Query: 128 WNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFS 187
           WN  L E + +   +P + CY  T Y  I    ++   ++K++ +L       DS     
Sbjct: 116 WNPVLREIKWI---KPSV-CYLHTDYVGIGYDDNVSRDNYKILKLLGRLPKDDDS---DP 168

Query: 188 HVAVYNFSTNSWRDLKGFEMRFDYMVDRIYN--VYLNGYCYWVVCRPDYSKAILAFSMSN 245
           +  +Y F ++SW+ L     +FD+ +D   N  V + G  YW+  + +    I+ F  S 
Sbjct: 169 NCEIYEFKSDSWKTLVA---KFDWDIDIRCNNGVSVKGKMYWIAKKKE-DFTIIRFDFST 224

Query: 246 EVFQEIKGPSVPQTTTYYQSVKTPWMLGTYD-DCLSLLYSDKFAHSFELWIMKGGFWIKH 304
           E F+EI     P T            LG +D D LSLL   + +   E+W M      K 
Sbjct: 225 ETFKEI--CVCPYTLVT--------RLGCFDGDRLSLLLQGEESQGIEVW-MTNKLSDKV 273

Query: 305 LTFGPFIETYQP 316
           ++F  +     P
Sbjct: 274 VSFSQYFNVTTP 285

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1

 Score = 72.4 bits (176), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 135/310 (43%), Gaps = 50/310 (16%)

Query: 13  LSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVYCTYKN-- 70
           L +++ IE L RL +K L RF+CVC +W DL+ DP F   +  RD +    V    KN  
Sbjct: 5   LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGFTETY--RDMSPAKFVSFYDKNFY 62

Query: 71  PDDRDPFDDLITYFSVFP-DRTLTDLHFQDLEPIMRGIHIGPYDGIFCL-LKSHTLINLW 128
             D +    +IT    FP D+++ D              +   DG  C+ LK+HTL+ +W
Sbjct: 63  MLDVEGKHPVITNKLDFPLDQSMID----------ESTCVLHCDGTLCVTLKNHTLM-VW 111

Query: 129 NVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSH 188
           N    +++ +P   P +  Y  ++   +  G D V  D+K+V  +           D S 
Sbjct: 112 NPFSKQFKIVPN--PGI--YQDSNI--LGFGYDPVHDDYKVVTFIDRL--------DVST 157

Query: 189 VAVYNFSTNSWRDLKGFEMRFDY----MVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMS 244
             V+ F T SW    G  +R  Y      DR    +L+ Y YW+  R    + IL F++S
Sbjct: 158 AHVFEFRTGSW----GESLRISYPDWHYRDR-RGTFLDQYLYWIAYRSSADRFILCFNLS 212

Query: 245 NEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIM-KGGFWIK 303
              ++++  P       Y Q V + W LG     L +   +       + +M K G W K
Sbjct: 213 THEYRKLPLP------VYNQGVTSSW-LGVTSQKLCITEYEMCKKEIRISVMEKTGSWSK 265

Query: 304 --HLTFGPFI 311
              L+   FI
Sbjct: 266 IISLSMSSFI 275

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAE7|FB138_ARATH Putative F-box protein At3g10430 OS=Arabidopsis thaliana GN=At3g10430 PE=4 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 108/242 (44%), Gaps = 26/242 (10%)

Query: 16  DMMIETLSRLPVKSLMRFKCVCISWCDLV-KDPNFIYKHLKRDDNMRLMVYCTYKNPDDR 74
           D+++E L R P +SL+RFK  C  W +L+  D  F+YKHL +    R +     +     
Sbjct: 8   DLILEILQRTPAESLLRFKSTCKKWYELISNDKRFMYKHLDK-STKRFLRIENRERVQIL 66

Query: 75  DPFDDLITYFSVFPD----RTLTDLHFQDLEPIMRGIHIGPYDGIFCLLKSHTLINLWNV 130
           DP  +++   S  P+    +  T +H   L   M G+        +  L S   + +WN 
Sbjct: 67  DPVTEILA-VSTIPNELRHKYFTLIHCDGL---MLGM-------CYEELGSDPNLAVWNP 115

Query: 131 SLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVA 190
            + + + + +  P L CY  + Y  +  G D    D   +L  T   D  D    +    
Sbjct: 116 VMRKIKWI-KPSPPLVCYWGSDY--LGFGYDKTFRDNYKILRFTYLGDDDDD-ESYPKCQ 171

Query: 191 VYNFSTNSWRDLKGFEMRFDYMVD-RIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQ 249
           +Y F++ SWR +   E +FD  +D  +  V +NG  YW+  + +    IL+F  S E F 
Sbjct: 172 IYEFNSGSWRSI---EAKFDGEIDVEVDGVSVNGSMYWIELQ-EKKNFILSFDFSKETFN 227

Query: 250 EI 251
            I
Sbjct: 228 RI 229

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUP5|FBK59_ARATH F-box/kelch-repeat protein At3g17530 OS=Arabidopsis thaliana GN=At3g17530 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 123/310 (39%), Gaps = 22/310 (7%)

Query: 10  LGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVYCTYK 69
           + DL  D+  E LSR+P KSL ++K  C  W  L +DP+F+ K+  +     ++V    +
Sbjct: 3   ISDLPHDLESEILSRVPAKSLAKWKTTCKRWYALFRDPSFVKKNFDKAGGREMIVLMNSR 62

Query: 70  NPDDRDPFDDLITYFSVFPDRTLTDLHFQDLEPIMRGIHIGPY---DG-IFCLLKSHTLI 125
              +      +   F    + T   +   D     +G+ I      DG I C     T +
Sbjct: 63  VYSNSVNLQGINNRFDPSMEVTGKLIKLND----SKGVDISAIFHCDGLILCTTTESTGL 118

Query: 126 NLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHD 185
            +WN    E R +   +PR+       YA            +K++     + DQ  S   
Sbjct: 119 VVWNPCTGEIRCI---KPRIFYRCNDRYALGYGNSKSSCHSYKILRSCCYYVDQNLSLM- 174

Query: 186 FSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSN 245
            +   +Y+FST+SWRDL         M+     V L G  YWV    +    +  F  S 
Sbjct: 175 AAEFEIYDFSTDSWRDLGDITRD---MIVYSSGVSLKGNTYWVSGSKEKGFFMRYFDFSK 231

Query: 246 EVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFEL--WIMKGGFWIK 303
           EVF  +     P     + +  T  +    ++ +++L     A S E+  W+       K
Sbjct: 232 EVFGRL-----PLPYQSFNANHTAALSAVGNEKIAVLQQKILAMSDEMRIWVTNKIDEAK 286

Query: 304 HLTFGPFIET 313
            L++  F+ T
Sbjct: 287 DLSWSNFLLT 296

Arabidopsis thaliana (taxid: 3702)

>sp|Q4PSN6|FBW1_ARATH F-box/WD-40 repeat-containing protein 1 OS=Arabidopsis thaliana GN=FBW1 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 158/375 (42%), Gaps = 60/375 (16%)

Query: 16  DMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVYCTYKNPDDRD 75
           ++  E L R+P KSL+R K  C  W  L  D  FIYKHL     +R  +  T +     +
Sbjct: 41  ELFEEILCRVPTKSLLRLKLTCKRWLALFNDKRFIYKHLAL---VREHIIRTNQMVKIIN 97

Query: 76  PFDDLITYFSVFPDRTLTDLHFQDLEPIMRGIHIGPYDGIFCLLKSHTLINLWNVSLNEY 135
           P     + FS+ P++      FQ    I   +   P DG+   +     + +WN  LN+ 
Sbjct: 98  PVVGACSSFSL-PNK------FQVKGEIYTMV---PCDGLLLCIFETGSMAVWNPCLNQV 147

Query: 136 RGLPECRPRL---PCYTRTHYANIALGLDLVTGD----FKLVLILTLWNDQRDSFHDFSH 188
           R +    P      CY         +G D ++ D     + V  +   N+  ++      
Sbjct: 148 RWIFLLNPSFRGCSCY--------GIGYDGLSRDSYKILRFVNGVFTKNEYANTGSYKPE 199

Query: 189 VAVYNFSTNSWRDLKGFEMRFD-YMVDRIYNVYLNGYCYWVVC---RPDYSKAILAFSMS 244
           V +Y   +NSW   K F++  D ++V R   + L G  YW+     +PD    I +F+ S
Sbjct: 200 VDIYELKSNSW---KTFKVSLDWHVVLRCKGLSLKGNMYWIAKWNRKPDI--FIQSFNFS 254

Query: 245 NEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWI---MKGG-- 299
            E F+ +   S+P     +  V      G   D LSLL+  K     ++W+   +K G  
Sbjct: 255 TETFEPL--CSLPVRYDVHNVVALSAFKG---DNLSLLHQSKETSKIDVWVTNKVKNGVS 309

Query: 300 -FWIKHLTFG----PFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRDLGITGLWF 354
             W K  +      P +  ++ L +       ++ +++ V+  +    + R++ +     
Sbjct: 310 ILWTKLFSVTRPDLPVLLAFENLSY---PVHFIDKNNRIVVCCEEVLADKRNVAV----- 361

Query: 355 SVHILKESLIRMKDE 369
           +++++ E  I+ +DE
Sbjct: 362 NIYVIGEDEIKSQDE 376

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2

 Score = 64.3 bits (155), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 158/380 (41%), Gaps = 60/380 (15%)

Query: 16  DMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKR-----DDNMRLMVYCTYKN 70
           D++ +   RLP K+L+R + +      L+ DP+FI  HL R     D  M L+       
Sbjct: 7   DIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGALRLY 66

Query: 71  PDDRDPFDDLITYFSVFPDRTLTDLHFQDLEPIMRGIHI---GPYDGIFCLLKSHTLINL 127
             D D  D            +++D+      P+ RG      G  +G+  L  S T + +
Sbjct: 67  SVDLDSLD------------SVSDVE----HPMKRGGPTEVFGSSNGLIGLSNSPTDLAV 110

Query: 128 WNVSLNEYRGLPECRPRLPCYTRTH-YANIALGLDLVTGDFKLVLILTLWNDQRDSFH-D 185
           +N S  +   LP     LP  + T  Y    LG D V+ D+K+V ++    D  D     
Sbjct: 111 FNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCS 170

Query: 186 FSH-VAVYNFSTNSWRDLKG--------FEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSK 236
           F + V V++   NSW+ ++         F   +  +  R Y V      +WV+ R     
Sbjct: 171 FPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLI 230

Query: 237 A---ILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSF-E 292
           A   I+ F ++ E F+ ++ P          +V     +G  D CL L+ +  +  S+ +
Sbjct: 231 AFNLIVRFDLALEEFEIVRFPEAVANG----NVDIQMDIGVLDGCLCLMCN--YDQSYVD 284

Query: 293 LWIMKG----GFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRDLG 348
           +W+MK       W K  T     ++ +   + R    L+ S DK+ +L +    ++    
Sbjct: 285 VWMMKEYNVRDSWTKVFTVQK-PKSVKSFSYMRP---LVYSKDKKKVLLELNNTKL---- 336

Query: 349 ITGLWFSVHILKESLIRMKD 368
              +WF +   K S +R+KD
Sbjct: 337 ---VWFDLESKKMSTLRIKD 353

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAB5|FBLK2_ARATH Putative F-box/LRR-repeat/kelch-repeat protein At1g11620 OS=Arabidopsis thaliana GN=At1g11620 PE=4 SV=1

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 130/313 (41%), Gaps = 45/313 (14%)

Query: 12  DLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVYCTYKNP 71
           DLS D++ E LSR+P +SL+R +  C  W  L+ +P F+ KHL      R   +  + N 
Sbjct: 5   DLSSDLVEEILSRVPARSLVRLRSTCKQWEALIAEPRFVNKHLSH-MRYREQQFTVFNNE 63

Query: 72  DDRDP-FDDLITYFSV---FPDRTLTDLHFQ-DLEPIMRGIHIGPYDGIFCLLKSHTLIN 126
               P F    +Y  +    P+     L F   L P    I+I   DG+  L  + +++ 
Sbjct: 64  HIVSPLFGSTTSYVGIDFNKPENCGVKLPFPIALSP---AINISHCDGLL-LYVTKSMLL 119

Query: 127 LWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTG------DFKLVLILTLWNDQR 180
           + N  L++ R        + C     ++  A GL  +        D+K+V         R
Sbjct: 120 VANPLLSQKRW-------IKCSEGFDHSMDAYGLGYLFNQSSGFYDYKVVRF-------R 165

Query: 181 DSFHDFSHVAVYNFSTNSWR-----DLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYS 235
               + S V VY F ++SW+     +  GF+         + +V L G  YW+      +
Sbjct: 166 CGIKNSSRVEVYAFKSDSWKVVVDTNFGGFDGL------PLSSVCLRGTPYWLGYNKSGN 219

Query: 236 K--AILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFEL 293
           +  +I +F  S E F+ +  P  PQ+      VK   +     D LSLL          L
Sbjct: 220 ELMSIQSFDFSKERFEPLFLP--PQSIGSRNLVKYISLGIFRGDQLSLLLECHETCKLHL 277

Query: 294 WIMKGGFWIKHLT 306
           W+MK   W + +T
Sbjct: 278 WVMKKQHWSRLMT 290

Arabidopsis thaliana (taxid: 3702)

>sp|O49421|FB238_ARATH F-box protein At4g19940 OS=Arabidopsis thaliana GN=At4g19940 PE=4 SV=1

 Score = 61.6 bits (148), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 64/250 (25%), Positives = 106/250 (42%), Gaps = 16/250 (6%)

Query: 16  DMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVYCTYKNPDDRD 75
           D++IE L+RLP KSLMRFK V   W  L+   NF  + LK     RL +  +     D  
Sbjct: 38  DLVIEILTRLPAKSLMRFKSVSKLWSSLICSRNFTNRLLKLSSPPRLFMCLS---SSDNS 94

Query: 76  PFDDLITYFSVFPDRTLT---DLHFQDLE-PIMRGIHIG-PYDGIFCLLKSHTLINLWNV 130
               ++   S  PD  +T    +  QDL  P M+G  I   + G+ CL+K  +   ++N 
Sbjct: 95  HLKTVLLSLSSPPDSDITMSSSVIDQDLTMPGMKGYQISHVFRGLMCLVKKSS-AQIYNT 153

Query: 131 SLNEYRGLPECRPRLPCYTRTHYANIA--LGLDLVTGDFKLVLILTLWNDQRDSFHDFSH 188
           +  +   LP+               I   +G D V   +K+V I++  +D+ + +   S 
Sbjct: 154 TTRQLVVLPDIEESTILAEEHKSKKIMYHIGHDPVYDQYKVVCIVSRASDEVEEYTFLSE 213

Query: 189 VAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNG---YCYWVVCRPDYSKAILAFSMSN 245
             V        R  +    ++   V     + L+G   Y  WV  R   ++ ++ F   +
Sbjct: 214 HWVLLLEGEGSRRWRKISCKYPPHVPLGQGLTLSGRMHYLAWV--RVSDNRVLVIFDTHS 271

Query: 246 EVFQEIKGPS 255
           E F  ++ P 
Sbjct: 272 EEFSMLQVPG 281

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUP4|FBK60_ARATH Putative F-box/kelch-repeat protein At3g17540 OS=Arabidopsis thaliana GN=At3g17540 PE=4 SV=1

 Score = 60.5 bits (145), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 131/316 (41%), Gaps = 34/316 (10%)

Query: 6   RVKTLGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVY 65
           +   + DL  ++  E LSR+P KSL +    C  W  L +DP F+ K+  + +  RLM++
Sbjct: 3   KTMVISDLPHEIESEILSRVPTKSLAKLHTTCKRWYALFRDPRFVKKNFGKSER-RLMLH 61

Query: 66  CT---YKNPDD----RDPFDDLITYFSVFPDRTLTDLHFQDLEPIMRGIHIGPYDG-IFC 117
                YK  DD     +  D  + + S      L++L   +   I +  H    DG I C
Sbjct: 62  SNFGVYKITDDLHGILNSGDPSLEFTS-----KLSNLKISEDLTITKIFHC---DGLILC 113

Query: 118 LLKSHTLINLWNVSLNEYRGL-PECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLW 176
             K +T + +WN    + R + P  R R        Y N          ++K++     +
Sbjct: 114 STKENTRLVVWNPCTGQTRWIKPSKRYRSDDSYCLGYVNSKSSYH----NYKILRYCFYY 169

Query: 177 NDQRDSFHDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSK 236
           NDQ     +F    +Y+FS+ SWR L  +  R   +    + + L G  Y+V    +   
Sbjct: 170 NDQDACVSEFE---IYDFSSESWRVLDDYCTREWGLF--CHGMSLKGNTYFVAGEKETGF 224

Query: 237 AILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSD--KFAHSFELW 294
            +L F    E F+ +     P     + S  T  +     + L++L+ +   F++   +W
Sbjct: 225 FMLYFDFKTERFERL-----PLPYQSFDSEDTAVLSIVGGEKLAVLHQNIQSFSNEMRIW 279

Query: 295 IMKGGFWIKHLTFGPF 310
           +       K LT+  F
Sbjct: 280 VTNKIDEAKDLTWSNF 295

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
224119696	367	predicted protein [Populus trichocarpa]	0.900	0.910	0.297	3e-36
224117590	441	f-box family protein [Populus trichocarp	0.948	0.798	0.305	4e-31
197253339	395	SFBB26-beta [Pyrus x bretschneideri]	0.929	0.873	0.298	1e-30
197253331	395	SFBB13-beta [Pyrus x bretschneideri]	0.873	0.820	0.294	1e-30
197253329	395	SFBB12-beta [Pyrus pyrifolia]	0.929	0.873	0.293	1e-30
197253337	395	SFBB19-beta [Pyrus x bretschneideri]	0.929	0.873	0.296	5e-30
293337879	387	SFBBbeta protein, partial [Pyrus pyrifol	0.873	0.837	0.294	1e-29
197253333	394	SFBB21-beta [Pyrus x bretschneideri]	0.878	0.827	0.298	3e-29
316996546	400	hypothetical protein [Pyrus pyrifolia]	0.943	0.875	0.299	3e-29
345433646	394	S-locus F-box brothers4-S1 [Pyrus pyrifo	0.862	0.812	0.303	1e-28

>gi|224119696|ref|XP_002318137.1| predicted protein [Populus trichocarpa] gi|222858810|gb|EEE96357.1| predicted protein [Populus trichocarpa]

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 175/366 (47%), Gaps = 32/366 (8%)

Query: 13  LSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVYCTYKNPD 72
           L +D++IE LS LPVK+L++FKCVC SW  ++   NFI  HL             Y N  
Sbjct: 9   LPEDVIIEILSLLPVKTLLQFKCVCKSWYGIITSSNFISLHLNNH----------YNNIK 58

Query: 73  DRDPFDDLI--TYFSVFPDRTLTDLHFQDLEPIMRGIHIGPYDGIFCL-LKSHTLINLWN 129
                   +      +F D +LTDL  Q L+P +RG   GP +GIF +  +  +   LWN
Sbjct: 59  SGHLLAHFVCPQLLELFQDESLTDLSHQGLDPPIRGRLCGPCNGIFYVDSEDSSGSGLWN 118

Query: 130 VSLNEYRGLPE---CRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQR--DSFH 184
            +  E++ LPE    +  LP Y    Y     G D VT D+K+V+I   +  +   + F 
Sbjct: 119 PATKEFKLLPEKIRNKSSLPLYYEDSY---GFGFDPVTNDYKVVVIRESYTREYYLEKFP 175

Query: 185 DFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMS 244
             S V VY   T+SWR     +  +  + +  Y   ++G  YW      +   IL+F+M+
Sbjct: 176 S-SLVIVYTLRTDSWRCWGSLDQGYTLLGNYCY-TNVDGVYYWQAGHGVHMNVILSFNMA 233

Query: 245 NEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGGFWIKH 304
            + FQEI+ P        Y        L  Y D ++           ++W++  G WI+ 
Sbjct: 234 TDAFQEIQEPD-------YDKPAYSTRLILYHDSIAFSTVHNVEKFLDIWVLNEGCWIRQ 286

Query: 305 LTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRDLGI--TGLWFSVHILKES 362
               P +E   P+  W+    +L+S + +++LYD+   E++DL    TG+ + + + +ES
Sbjct: 287 FKSRPLLELRNPVAHWKNGNVILDSDNDQLMLYDTNKQELKDLRFKGTGVCYEILVYRES 346

Query: 363 LIRMKD 368
           L+ +KD
Sbjct: 347 LVSIKD 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117590|ref|XP_002331674.1| f-box family protein [Populus trichocarpa] gi|222874093|gb|EEF11224.1| f-box family protein [Populus trichocarpa]

 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 119/390 (30%), Positives = 190/390 (48%), Gaps = 38/390 (9%)

Query: 2   EREIRV----KTLGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHL--- 54
           ERE+ V     T   L +D++IE LSRLPVK+L++FKCVC SW  ++  PNFI KHL   
Sbjct: 27  EREMSVVMATMTGHPLPEDVVIEILSRLPVKNLLQFKCVCKSWYAIITSPNFISKHLRNY 86

Query: 55  --KRDDNMRLMV-YCTYKNPDDRDPFDDLITYFSVFPDRTLTDLHFQDLEPIMRGIHIGP 111
             K DD+  L+V YC  +  +       L     V    +L ++ F    P +     GP
Sbjct: 87  YSKSDDSDCLLVQYCVTQAGELESLELLLDETPKVLSYASLGNMPFHS--PFL----CGP 140

Query: 112 YDGIFCLLKS-HTLINLWNVSLNEYRGLPECRPRLPCYTRT-HYANIALGLDLVTGDFKL 169
            DGIF + +  +     WN ++NE++ LP        ++ +  Y     GL  VT D+++
Sbjct: 141 CDGIFYMYRDYYDFRAFWNPAVNEFKFLPPLPNPPSNFSYSPQYDAYGFGLHPVTKDYEV 200

Query: 170 VLILTLWNDQRDSFHDFSH---VAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCY 226
           V++   W ++++      +   V VY+ ST SWR   G   R+ Y+ +    + +NG  +
Sbjct: 201 VVMKDYWREKQEERGGCRYPLRVFVYSSSTGSWRHW-GDLSRYYYLQNNKCYICMNGVFF 259

Query: 227 WVVCRP---DYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLL- 282
           W+       D  K I++F M+ E  QEI+ P   ++            L TY D L++L 
Sbjct: 260 WLGSYEIFGDPEKVIISFDMATETCQEIQLPDCGKS-------HNCQCLATYQDSLAILD 312

Query: 283 YSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYH 342
             +KF H   +W +    W+K+ + GP  E   P+G W+  + +L S    +IL D    
Sbjct: 313 VHEKFLH---MWTLNERCWVKNFSIGPLPEISYPIGHWKNSKLILVSDSGELILCDPSTQ 369

Query: 343 EMRDLGITGLWFSVHIL--KESLIRMKDED 370
           E+  LG+T     V +   KESL+ + + +
Sbjct: 370 EISGLGLTRWVRCVGVFAYKESLVLVNNGN 399

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|197253339|gb|ACH54104.1| SFBB26-beta [Pyrus x bretschneideri]

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/395 (29%), Positives = 191/395 (48%), Gaps = 50/395 (12%)

Query: 11  GDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRD-DNMRLMVYCTYK 69
            +  +D ++ETLSRLP KSLMRFKC+  SWC L+  P+F+ KHL    DN R    C   
Sbjct: 7   NETPEDRVVETLSRLPPKSLMRFKCIRKSWCTLINTPSFVAKHLNNSVDNKRSSNTCILL 66

Query: 70  N-------PDDRDPFDDLITYFSVFPDRTLTDLHF-----------QDLEPIMRGIHIGP 111
           N       PD+   ++   +  S+  D    +LH+           +D  P++  IH G 
Sbjct: 67  NRSQMPVFPDNSWKYEVFWSMISLSIDSDEHNLHYDVEDLNIPFPMEDHHPVV--IH-GH 123

Query: 112 YDGIFCLLKSHTLINLWNVSLNEYRG----LPECRPRLPCYTRTHYANIALGLDLVTGDF 167
            +GI C++    ++ L N ++ E+R     L    P +     T +  +  G D    ++
Sbjct: 124 CNGIVCVIIGKNVV-LCNPAIGEFRQLPDCLLLPLPNIKFQLETSFGGLGFGYDCKAKEY 182

Query: 168 KLVLI---LTLWNDQRDSFH--DFSHVA-VYNFSTNSWRDLKGFEMRFDYMVDRIYNVYL 221
           K+V I       + +R  +H  D  H A VY  + NSW+++K  ++     +D    VYL
Sbjct: 183 KVVRITENCEYSDAERTYYHRIDLPHTAQVYITTANSWKEIK-IDISSKSYLDSC-PVYL 240

Query: 222 NGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSL 281
            G+CYW+    D  + IL+F +S+E+F  I+ P   +++  + ++   ++      C   
Sbjct: 241 KGFCYWIA--NDGEEFILSFDLSDEIFHRIQMPLGRESSLQFCNL---FLYNESLACFCS 295

Query: 282 LY----SDKFAHSFELWIMK-----GGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDK 332
           LY    + +    FE+W+M         W K L  GPF     PL FW+ DEFL+ +SD+
Sbjct: 296 LYGPSGNSRLFEIFEIWVMDDYHGVKSSWTKLLAIGPFKHNENPLTFWKSDEFLMVTSDR 355

Query: 333 RVILYDSRYHEMRDLGITGLWFSVHILKESLIRMK 367
           RV  Y+S    ++ L I  +   V I  ++LI +K
Sbjct: 356 RVTSYNSSTGNLKYLLIPPIMNEV-IDLQALIYVK 389

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|197253331|gb|ACH54100.1| SFBB13-beta [Pyrus x bretschneideri]

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 179/373 (47%), Gaps = 49/373 (13%)

Query: 11  GDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRD-DNMRLMVYCTYK 69
            +  +D ++E LSRLP KSLMRFKC+  SWC L+  P+F+ KHL    DN R    C   
Sbjct: 7   SETPEDKVVEILSRLPSKSLMRFKCIRKSWCTLINGPSFVAKHLNNSVDNKRSSNTCILL 66

Query: 70  N-------PDDRDPFDDLITYFSVFPDRTLTDLHF-----------QDLEPIMRGIHIGP 111
           N       PD+   ++   +  S+  D    +LH+           +D  P++  IH G 
Sbjct: 67  NRSQMPVFPDNSWKYEVFWSMISLSIDSDEHNLHYDVEDLNIPFPMEDHHPVV--IH-GH 123

Query: 112 YDGIFCLLKSHTLINLWNVSLNEYRG----LPECRPRLPCYTRTHYANIALGLDLVTGDF 167
            +GI C++    ++ L N ++ E+R     L    P +     T +  +  G D    ++
Sbjct: 124 CNGIVCVITGKNVV-LCNPAIGEFRQLPDCLLLPLPNIKFQLETSFGGLGFGYDCKAKEY 182

Query: 168 KLVLI---LTLWNDQRDSFH--DFSHVA-VYNFSTNSWRDLKGFEMRFDYMVDRIYNVYL 221
           K+V I       + +R  +H  D  H A VY  + NSW+++K  ++     +D    VYL
Sbjct: 183 KVVRITENCEYSDAERTYYHRIDLPHTAQVYTTTANSWKEIK-IDISSKSYLDSC-PVYL 240

Query: 222 NGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSL 281
            G+CYW+    D  + IL+F +S+E+F  I+ P   +++  + ++   ++      C   
Sbjct: 241 KGFCYWIA--NDGEEFILSFDLSDEIFHRIQMPLGRESSLQFCNL---FLYNESLACFCS 295

Query: 282 LY----SDKFAHSFELWIMK-----GGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDK 332
           LY    + +    FE+W+M         W K L  GPF     PL FW+ DEFL+ +SD+
Sbjct: 296 LYGPSGNSRLFEIFEIWVMDDYHGVKSSWTKLLAIGPFKHNENPLTFWKSDEFLMVTSDR 355

Query: 333 RVILYDSRYHEMR 345
           RV  Y+S    ++
Sbjct: 356 RVTSYNSSTGNLK 368

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|197253329|gb|ACH54099.1| SFBB12-beta [Pyrus pyrifolia]

 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/395 (29%), Positives = 190/395 (48%), Gaps = 50/395 (12%)

Query: 11  GDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRD-DNMRLMVYCTYK 69
            +  +D ++E LSRLP KSLMRFKC+  SWC L+  P+F+ KHL    DN R    C   
Sbjct: 7   SETPEDKVVEILSRLPSKSLMRFKCIRKSWCTLINGPSFVAKHLNNSVDNKRSSNTCILL 66

Query: 70  N-------PDDRDPFDDLITYFSVFPDRTLTDLHF-----------QDLEPIMRGIHIGP 111
           N       PD+   ++   +  S+  D    +LH+           +D  P++  IH G 
Sbjct: 67  NRSQMPVFPDNGWKYEVFWSMISLSIDSDEHNLHYDVEDLNIPFPMEDHHPVV--IH-GH 123

Query: 112 YDGIFCLLKSHTLINLWNVSLNEYRG----LPECRPRLPCYTRTHYANIALGLDLVTGDF 167
            +G+ C++    ++ L N ++ E+R     L    P +     T +  +  G D    ++
Sbjct: 124 CNGVVCVITGKNVV-LCNPAIGEFRQLPDCLLLPLPNIKFQLETSFGGLGFGYDCKAKEY 182

Query: 168 KLVLI---LTLWNDQRDSFH--DFSHVA-VYNFSTNSWRDLKGFEMRFDYMVDRIYNVYL 221
           K+V I       + +R  +H  D  H A VY  + NSW+++K  ++     +D    VYL
Sbjct: 183 KVVRITENCEYSDAERTYYHRIDLPHTAQVYTTTANSWKEIK-IDISSKSYLDSC-PVYL 240

Query: 222 NGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSL 281
            G+CYW+    D  + IL+F +S+E+F  I+ P   +++  + ++   ++      C   
Sbjct: 241 KGFCYWIA--NDGEEFILSFDLSDEIFHRIQMPLGRESSLQFCNL---FLYNESLACFCS 295

Query: 282 LY----SDKFAHSFELWIMK-----GGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDK 332
           LY    + +    FE+W+M         W K L  GPF     PL FW+ DEFL+ +SD+
Sbjct: 296 LYGPSGNSRLFEIFEIWVMDDYHGVKSSWTKLLAIGPFKHNENPLTFWKSDEFLMVTSDR 355

Query: 333 RVILYDSRYHEMRDLGITGLWFSVHILKESLIRMK 367
           RV  Y+S    ++ L I  +   V I  ++LI +K
Sbjct: 356 RVTSYNSSTGNLKYLLIPPIMNEV-IDLQALIYVK 389

Source: Pyrus pyrifolia

Species: Pyrus pyrifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|197253337|gb|ACH54103.1| SFBB19-beta [Pyrus x bretschneideri]

 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 117/395 (29%), Positives = 188/395 (47%), Gaps = 50/395 (12%)

Query: 11  GDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRD-DNMRLMVYCTYK 69
            +  +D ++E LSRLP KSLMRFKC+  SWC L+  P+F+ KHL    DN R    C   
Sbjct: 7   SETPEDKVVEILSRLPSKSLMRFKCIRKSWCTLINGPSFVAKHLNNSVDNKRSSNTCILL 66

Query: 70  N-------PDDRDPFDDLITYFSVFPDRTLTDLHF-----------QDLEPIMRGIHIGP 111
           N       PD+   ++   +  S+  D    +LH+           +D  P++  IH G 
Sbjct: 67  NRSQMPVFPDNSWKYEVFWSMISLSIDSDEHNLHYDVEDLNIPFPMEDHHPVV--IH-GH 123

Query: 112 YDGIFCLLKSHTLINLWNVSLNEYRG----LPECRPRLPCYTRTHYANIALGLDLVTGDF 167
            +GI C++    ++ L N ++ E R     L    P +     T +  +  G D    ++
Sbjct: 124 CNGIVCVITGKNVV-LCNPAIGESRQLPDCLLLPLPNIKFQLETSFGGLGFGYDCKAKEY 182

Query: 168 KLVLI---LTLWNDQRDSFH--DFSHVA-VYNFSTNSWRDLKGFEMRFDYMVDRIYNVYL 221
           K+V I       + +R  +H  D  H A VY  + NSW+++K  ++     +D    VYL
Sbjct: 183 KVVRITENCEYSDAERTYYHRIDLPHTAQVYTTTANSWKEIK-IDISSKSYLDSC-PVYL 240

Query: 222 NGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSL 281
            G+CYW+    D  + IL+F +S+E+F  I+ P   +++  + ++   ++      C   
Sbjct: 241 KGFCYWIA--NDGEEFILSFDLSDEIFHRIQMPLGRESSLQFCNL---FLYNESLACFCS 295

Query: 282 LY----SDKFAHSFELWIMK-----GGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDK 332
           LY    + +    FE+W+M         W K L  GPF     PL FW+ DEFL+  SD+
Sbjct: 296 LYGPSGNSRLFEIFEIWVMDDYHGVKSSWTKLLAIGPFKHNENPLTFWKSDEFLMVPSDR 355

Query: 333 RVILYDSRYHEMRDLGITGLWFSVHILKESLIRMK 367
           RV  Y+S    ++ L I  +   V I  ++LI +K
Sbjct: 356 RVTSYNSSTGNLKYLLIPPIMNEV-IDLQALIYVK 389

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|293337879|gb|ADE43183.1| SFBBbeta protein, partial [Pyrus pyrifolia]

 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 180/373 (48%), Gaps = 49/373 (13%)

Query: 15  DDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRD-DNMRLMVYCTYKN--- 70
           +D ++E LSRLP KSLMRFKC+  SWC L+  P+F+ +HL    D+ R    C   N   
Sbjct: 3   EDKVVEILSRLPPKSLMRFKCIRKSWCTLINGPSFVAEHLNNSVDSKRSSNTCILLNRSQ 62

Query: 71  ----PDDRDPFDDLITYFSVFPDRTLTDLHF-----------QDLEPIMRGIHIGPYDGI 115
               PD+   ++   +  S+  D    +LH+           +D  P++  IH G  +GI
Sbjct: 63  MPVFPDNSWKYEVFWSMISLSIDSDEHNLHYDVEDLNIPFPMEDHHPVV--IH-GHCNGI 119

Query: 116 FCLLKSHTLINLWNVSLNEYRG----LPECRPRLPCYTRTHYANIALGLDLVTGDFKLVL 171
            C++    ++ L N ++ E+R     L    P +     T +  +  G D    ++K+V 
Sbjct: 120 VCVITGKNVV-LCNPAIGEFRQLPDCLLLPLPNIKFQLETSFGGLGFGYDCKAKEYKVVR 178

Query: 172 I---LTLWNDQRDSFH--DFSHVA-VYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYC 225
           I       + +R  +H  D  H A VY  + NSW+++K  ++     +D    VYL G+C
Sbjct: 179 ITENCEYSDAERTYYHRIDLPHTAQVYTTTANSWKEIK-IDISSKSYLDSC-PVYLKGFC 236

Query: 226 YWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLY-- 283
           YW+    D  + IL+F +S+E+F  I+ P   +++  + ++   ++      C   LY  
Sbjct: 237 YWIA--NDGEEFILSFDLSDEIFHRIQMPLGRESSLQFCNL---FLYNESLACFCSLYGP 291

Query: 284 --SDKFAHSFELWIMK-----GGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVIL 336
             + +    FE+W+M         W K L  GPF     PL FW+ DEFL+ +SD+RV  
Sbjct: 292 SGNSRLFEIFEIWVMDDYHGVKSSWTKLLAIGPFKHNENPLTFWKSDEFLMVTSDRRVTS 351

Query: 337 YDSRYHEMRDLGI 349
           Y+S    ++ L I
Sbjct: 352 YNSSTGNLKYLLI 364

Source: Pyrus pyrifolia

Species: Pyrus pyrifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|197253333|gb|ACH54101.1| SFBB21-beta [Pyrus x bretschneideri]

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 113/378 (29%), Positives = 174/378 (46%), Gaps = 52/378 (13%)

Query: 11  GDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRD-DNMRLMVYCTYK 69
            +  +D ++E LSRLP KSLMRFKC   SWC L+   +F+ KHL    DN      C   
Sbjct: 7   SETPEDKVVEILSRLPPKSLMRFKCTRKSWCTLINSSSFVAKHLSNSVDNKLSSSTCILL 66

Query: 70  NPDDRDPFDD---------LITYFSVFPDR-----TLTDLH----FQDLEPIMRGIHIGP 111
           N      F D          + Y S++ D       + DL+     +D  P+   IH G 
Sbjct: 67  NRSQMPVFPDKSWKYEILWSMIYLSIYSDEHNHHYDVEDLNIPFPLEDHHPVQ--IH-GY 123

Query: 112 YDGIFCLLKSHTLINLWNVSLNEYRGLPEC-----RPRLPCYTRTHYANIALGLDLVTGD 166
            +GI C++   T+I L N    E+R LP+       P+      T +  +  G D    +
Sbjct: 124 CNGIVCVIAGKTVIILCNPGTGEFRQLPDSCLLVPLPKEKFQLETIFGGLGFGYDCKAKE 183

Query: 167 FKLVLIL---TLWNDQRDSFHD--FSHVA-VYNFSTNSWRDLKGFEMRFDYMVDRIYNVY 220
           +K+V I+      +D+R  +H     H A VY  + NSW+++K       Y      +VY
Sbjct: 184 YKVVQIIENCEYSDDERTFYHSIPLPHTAEVYTIAANSWKEIKIDISTKTYPSS--CSVY 241

Query: 221 LNGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLS 280
           L G+CYW     D  + IL+F + +E+F  I+ PS  +++  +      + L  Y++ ++
Sbjct: 242 LKGFCYWFAS--DGEEYILSFDLGDEIFHRIQLPSRRESSFKF------YDLFLYNESIT 293

Query: 281 LLYS----DKFAHSFELWIMK-----GGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSD 331
              S     + +  FE+W+M         W K LT GPF     PL  W+ DE L+ +SD
Sbjct: 294 SYCSHYDPSEDSKLFEIWVMDDYDGIKSSWTKLLTVGPFKGIEYPLTLWKCDELLMLASD 353

Query: 332 KRVILYDSRYHEMRDLGI 349
            R I Y+S    ++ L I
Sbjct: 354 GRAISYNSSIGNLKYLHI 371

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|316996546|dbj|BAJ52236.1| hypothetical protein [Pyrus pyrifolia]

 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 120/401 (29%), Positives = 188/401 (46%), Gaps = 51/401 (12%)

Query: 11  GDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKR-DDNMRLMVYCTYK 69
            +  +D ++ETLSRLP KSLMRFKC+  SWC L+  P+F+ +HL    DN      C   
Sbjct: 7   SETPEDGVVETLSRLPPKSLMRFKCIRKSWCTLINSPSFVAEHLNNYVDNKLSSSTCILL 66

Query: 70  NPDDRDPFDD-------LITYFSVFPDRTLTDLHFQDLEPI-----MRG---IHIGPY-D 113
           N      F D         +  +++ D    +LH+ D+E +     + G   + I  Y +
Sbjct: 67  NRSQAHVFPDNSWKPEVFWSMINLYTDSDEHNLHY-DVEDLNIPFPLEGHDFVEIDGYCN 125

Query: 114 GIFCLL--KSHTLIN--LWNVSLNEYRGLPE------CRPRLPCYTRTHYANIALGLDLV 163
           GI C++  K+  LIN  L N +  E+R LP        RP+      T +  +  G D  
Sbjct: 126 GIVCVIAGKNLHLINVLLCNPATGEFRQLPHSCLLLPSRPKGKFELETIFGALGFGYDCK 185

Query: 164 TGDFKLVLIL---TLWNDQRDSFHDFS--HVA-VYNFSTNSWRDLKGFEMRFDYMVDRIY 217
             ++K+V I+      +DQ+  +H  +  H A VY  +TNSWR++K       Y     +
Sbjct: 186 DEEYKVVEIIENCEYSDDQQYYYHRIALPHTAEVYTTATNSWREIKIDISSETYHYS--F 243

Query: 218 NVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSV-KTPWMLGTYD 276
           +VYL G+CYW     D  K IL+F + +E+F  I+ PS  ++   + ++      + ++ 
Sbjct: 244 SVYLKGFCYWFAT--DGEKYILSFDLGDEIFHRIQLPSRRESDFEFSNIFLCDKSIASF- 300

Query: 277 DCLSLLYSDKFAHSFELWIMK-----GGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSD 331
            C     SD+ +   E+W+M         W K LTFGP      P  FW+ DE  L +S 
Sbjct: 301 -CFCHDPSDEASTLCEIWVMDDYDRVKSSWTKLLTFGPLKGIVNPFAFWKTDELFLVASG 359

Query: 332 KRVILYDSRYHEMRDLGITGLW-----FSVHILKESLIRMK 367
            R   Y+S    ++ L I  +      F   I  ES++ +K
Sbjct: 360 GRATSYNSNTGNLKYLHIPPILNEVSDFQALIYVESIVPVK 400

Source: Pyrus pyrifolia

Species: Pyrus pyrifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|345433646|dbj|BAK69456.1| S-locus F-box brothers4-S1 [Pyrus pyrifolia]

 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 170/362 (46%), Gaps = 42/362 (11%)

Query: 12  DLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVY-CTYKN 70
           + S+D ++  +S+LP KSLMRFKC+C SWC L+   +F+ KHL    + +   Y C   N
Sbjct: 8   ETSEDRLVAIMSKLPPKSLMRFKCICKSWCTLINSSSFVAKHLSNSVDNKFSSYTCILLN 67

Query: 71  -------PDDRDPFDDLITYFSVFPDRTLTDLHF--QDLE-PIMRGIHI-----GPYDGI 115
                  PD     + L +  + F DR    L++  +DL  P  R  H      G  +GI
Sbjct: 68  RSQVHVFPDKSWKHEVLWSMINFFNDRVACTLYYGVEDLNIPFPRDDHQHVLIHGYCNGI 127

Query: 116 FCLLKSHTLINLWNVSLNEYRGLPECRPRLPC------YTRTHYANIALGLDLVTGDFKL 169
            C++    ++ L N +  E+R LP+    LP          T +  +  G D    D+K+
Sbjct: 128 VCVISGKNIL-LCNPATREFRQLPDSFLLLPSPLGGKFELETDFGGLGFGYDCRAKDYKV 186

Query: 170 VLIL---TLWNDQRDSFH--DFSHVA-VYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNG 223
           V I+      +D+R  +H     H A VY  +TNSW+++K       Y      +VYL G
Sbjct: 187 VRIIENCEYSDDERTYYHRIPLPHTAEVYTMTTNSWKEIKIDISSKTYPCS--CSVYLKG 244

Query: 224 YCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTT-TYYQSVKTPWMLGTYDDCLSLL 282
           +CYW     D  + IL+F + NE F  I+ PS  ++   +Y        + ++    SL 
Sbjct: 245 FCYWFT--RDGEEFILSFDLGNERFHRIQLPSRRESGFEFYYIFLCNESIASF---CSLY 299

Query: 283 YSDKFAHSFELWIMK-----GGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILY 337
              + + S E+W+M         W K L  GPF    +PL  W+ +E L+  +D RVI Y
Sbjct: 300 DRSEDSKSCEIWVMDDNDGVKSSWTKLLVAGPFKGIEKPLTLWKCEELLMIDTDGRVISY 359

Query: 338 DS 339
           +S
Sbjct: 360 NS 361

Source: Pyrus pyrifolia

Species: Pyrus pyrifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	371
TAIR|locus:2082410	427	AT3G06240 "AT3G06240" [Arabido	0.757	0.658	0.233	1.2e-17
TAIR|locus:2075790	370	AT3G10430 "AT3G10430" [Arabido	0.590	0.591	0.276	2.9e-15
TAIR|locus:2076196	364	AT3G23880 "AT3G23880" [Arabido	0.830	0.846	0.259	1.3e-11
TAIR|locus:2027397	363	AT1G11620 "AT1G11620" [Arabido	0.822	0.840	0.258	2.8e-11
TAIR|locus:2135615	413	CPR1 "AT4G12560" [Arabidopsis	0.867	0.779	0.248	6.7e-11
TAIR|locus:2090567	388	AT3G17530 "AT3G17530" [Arabido	0.628	0.600	0.268	9.7e-11
TAIR|locus:2090577	396	AT3G17540 "AT3G17540" [Arabido	0.770	0.722	0.243	2.9e-10
TAIR|locus:2162321	388	AT5G42460 "AT5G42460" [Arabido	0.695	0.664	0.253	3e-09
TAIR|locus:2202023	364	AT1G12170 "AT1G12170" [Arabido	0.838	0.854	0.239	4.2e-09
TAIR|locus:2119787	411	AT4G19940 "AT4G19940" [Arabido	0.867	0.783	0.252	4.3e-09

TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
 Identities = 73/313 (23%), Positives = 143/313 (45%)

Query:    68 YKNPDDRDPFDDLITYF---SVFPDR-TLTDLHFQDLEPIMRGIHIGPYDGIFCLLKSHT 123
             Y   DD   F ++I  +    ++ DR  +  L+ +        I +G  +G+ C+     
Sbjct:   122 YPLKDDPSIFSEMIRNYVGDHLYDDRRVMLKLNAKSYRRNWVEI-VGSSNGLVCISPGEG 180

Query:   124 LINLWNVSLNEYRGLPE-CRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDS 182
              + L+N +  + + LPE  RP+   Y R ++     G D +T D+KLV ++    D  D+
Sbjct:   181 AVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLTDDYKLVKLVATSEDILDA 240

Query:   183 FHDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYN--VYLNGYCYWVVCRPDYS-KAIL 239
                    +VY+   +SWR +    + +++  D  Y   V+ NG  +WV     ++ + ++
Sbjct:   241 -------SVYSLKADSWRRI--CNLNYEHN-DGSYTSGVHFNGAIHWVFTESRHNQRVVV 290

Query:   240 AFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIM--- 296
             AF +  E F+E+  P   +  ++  S    +++G+ +  L ++ S    H  ++W+M   
Sbjct:   291 AFDIQTEEFREMPVPDEAEDCSHRFS---NFVVGSLNGRLCVVNSCYDVHD-DIWVMSEY 346

Query:   297 -KGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRDLGITGL--- 352
              +   W + +       + +PL   + DE +L   D  ++LY+   +   +LGI G+   
Sbjct:   347 GEAKSWSR-IRINLLYRSMKPLCSTKNDEEVLLELDGDLVLYNFETNASSNLGICGVKLS 405

Query:   353 -WFSVHILKESLI 364
               F  +   ESLI
Sbjct:   406 DGFEANTYVESLI 418

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075790 AT3G10430 "AT3G10430" [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 2.9e-15, P = 2.9e-15
 Identities = 66/239 (27%), Positives = 108/239 (45%)

Query:    16 DMMIETLSRLPVKSLMRFKCVCISWCDLVK-DPNFIYKHLKRDDNMRLMVYCTYKNPDDR 74
             D+++E L R P +SL+RFK  C  W +L+  D  F+YKHL +     L +    +     
Sbjct:     8 DLILEILQRTPAESLLRFKSTCKKWYELISNDKRFMYKHLDKSTKRFLRIE-NRERVQIL 66

Query:    75 DPFDDLITYFSVFPDRTLTDLHFQDLEPIMRGIHIGP-YDGIFCLLKSHTLINLWNVSLN 133
             DP  +++   S  P+  L   +F  +     G+ +G  Y+     L S   + +WN  + 
Sbjct:    67 DPVTEILAV-STIPNE-LRHKYFTLIH--CDGLMLGMCYEE----LGSDPNLAVWNPVMR 118

Query:   134 EYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYN 193
             + + +    P L CY  + Y  +  G D    D   +L  T   D  D    +    +Y 
Sbjct:   119 KIKWIKPSPP-LVCYWGSDY--LGFGYDKTFRDNYKILRFTYLGDDDDD-ESYPKCQIYE 174

Query:   194 FSTNSWRDLKGFEMRFDYMVD-RIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEI 251
             F++ SWR +   E +FD  +D  +  V +NG  YW+  + +    IL+F  S E F  I
Sbjct:   175 FNSGSWRSI---EAKFDGEIDVEVDGVSVNGSMYWIELQ-EKKNFILSFDFSKETFNRI 229

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 93/359 (25%), Positives = 147/359 (40%)

Query:    16 DMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVYCTYKNPDDRD 75
             +MM E L RLPVKSL RFKCVC SW  L+ +  F  KH        L++  +      + 
Sbjct:    17 EMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHA-------LILETSKATTSTKS 69

Query:    76 PFDDLIT--YF-------SVFPDRTLTDLHFQDLEPIMRGIH--IGPYDGIFCLLKSHTL 124
             P+  + T  Y        S++   T+  +   D E + R  +  +G   G+ C    +  
Sbjct:    70 PYGVITTSRYHLKSCCIHSLYNASTVY-VSEHDGELLGRDYYQVVGTCHGLVCFHVDYDK 128

Query:   125 -INLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSF 183
              + LWN ++   + L      L             G D    D+K+V +L     QR   
Sbjct:   129 SLYLWNPTIKLQQRLSSSD--LETSDDECVVTYGFGYDESEDDYKVVALL----QQR--- 179

Query:   184 HDFS-HVAVYNFSTNSWRDLKGFEMRFDYMVDRIYN-VYLNGYCYWVVCRPDYSKAILAF 241
             H       +Y+     WR    F      + D+  + +Y+NG   W       S  I+++
Sbjct:   180 HQVKIETKIYSTRQKLWRSNTSFPSGV-VVADKSRSGIYINGTLNWAATSSSSSWTIISY 238

Query:   242 SMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMK--GG 299
              MS + F+E+ GP       +  +      LG    CLS++   K A++ ++W+MK  G 
Sbjct:   239 DMSRDEFKELPGPVCCGRGCFTMT------LGDLRGCLSMVCYCKGANA-DVWVMKEFGE 291

Query:   300 F--WIKHLTFGPFIETYQPLGFWRKDEF--LLESSDKRVILYD---SRYHEMRDLGITG 351
                W K L+     +  +PL  W  D    LLE     + LY+    R+H      I+G
Sbjct:   292 VYSWSKLLSIPGLTDFVRPL--WISDGLVVLLEFRSG-LALYNCSNGRFHYPVSNSISG 347

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2027397 AT1G11620 "AT1G11620" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 88/340 (25%), Positives = 148/340 (43%)

Query:    12 DLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVYCTYKNP 71
             DLS D++ E LSR+P +SL+R +  C  W  L+ +P F+ KHL      R   +  + N 
Sbjct:     5 DLSSDLVEEILSRVPARSLVRLRSTCKQWEALIAEPRFVNKHLSHM-RYREQQFTVFNNE 63

Query:    72 DDRDP-FDDLITYFSV-F--PDRTLTDLHFQ-DLEPIMRGIHIGPYDGIFCLLKSHTLIN 126
                 P F    +Y  + F  P+     L F   L P    I+I   DG+  L  + +++ 
Sbjct:    64 HIVSPLFGSTTSYVGIDFNKPENCGVKLPFPIALSP---AINISHCDGLL-LYVTKSMLL 119

Query:   127 LWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTG--DFKLVLILTLWNDQRDSFH 184
             + N  L++ R + +C      ++   Y  +    +  +G  D+K+V         R    
Sbjct:   120 VANPLLSQKRWI-KCSEGFD-HSMDAYG-LGYLFNQSSGFYDYKVVRF-------RCGIK 169

Query:   185 DFSHVAVYNFSTNSWRDLKGFEMR-FDYMVDRIYNVYLNGYCYWVVCRPDYSK--AILAF 241
             + S V VY F ++SW+ +       FD +   + +V L G  YW+      ++  +I +F
Sbjct:   170 NSSRVEVYAFKSDSWKVVVDTNFGGFDGLP--LSSVCLRGTPYWLGYNKSGNELMSIQSF 227

Query:   242 SMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTY-DDCLSLLYSDKFAHSFELWIMKGGF 300
               S E F+ +  P  PQ+      VK    LG +  D LSLL          LW+MK   
Sbjct:   228 DFSKERFEPLFLP--PQSIGSRNLVKYI-SLGIFRGDQLSLLLECHETCKLHLWVMKKQH 284

Query:   301 WIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSR 340
             W + +T    ++  Q   + +     +E + +  +L  SR
Sbjct:   285 WSRLMT----VDVPQDAIYGKYFSSFIERNGRLALLIKSR 320

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 6.7e-11, P = 6.7e-11
 Identities = 94/378 (24%), Positives = 162/378 (42%)

Query:    16 DMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKR--DDNMRLMVYCTYKNPDD 73
             D++ +   RLP K+L+R + +      L+ DP+FI  HL R       LM+         
Sbjct:     7 DIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLR------ 60

Query:    74 RDPFDDLITYFSVFPDRTLTDLHFQDLE-PIMRG--IHI-GPYDGIFCLLKSHTLINLWN 129
                    +  +SV  D +L  +   D+E P+ RG    + G  +G+  L  S T + ++N
Sbjct:    61 -----GALRLYSVDLD-SLDSV--SDVEHPMKRGGPTEVFGSSNGLIGLSNSPTDLAVFN 112

Query:   130 VSLNEYRGLPECRPRLPCYTRTH-YANIALGLDLVTGDFKLVLILTLWNDQRDSFH-DFS 187
              S  +   LP     LP  + T  Y    LG D V+ D+K+V ++    D  D     F 
Sbjct:   113 PSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFP 172

Query:   188 H-VAVYNFSTNSWRDLKG--------FEMRFDYMVDRIYNVYLNGYCYWVVCR-PDYS-- 235
             + V V++   NSW+ ++         F   +  +  R Y V      +WV+ R P     
Sbjct:   173 YEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAF 232

Query:   236 KAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSF-ELW 294
               I+ F ++ E F+ ++ P          +V     +G  D CL L+ +  +  S+ ++W
Sbjct:   233 NLIVRFDLALEEFEIVRFPEAVANG----NVDIQMDIGVLDGCLCLMCN--YDQSYVDVW 286

Query:   295 IMKG----GFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRDLGIT 350
             +MK       W K  T     ++ +   + R    L+ S DK+ +L      E+ +  + 
Sbjct:   287 MMKEYNVRDSWTKVFTVQK-PKSVKSFSYMRP---LVYSKDKKKVLL-----ELNNTKL- 336

Query:   351 GLWFSVHILKESLIRMKD 368
              +WF +   K S +R+KD
Sbjct:   337 -VWFDLESKKMSTLRIKD 353

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0042177 "negative regulation of protein catabolic process" evidence=IMP

TAIR|locus:2090567 AT3G17530 "AT3G17530" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 9.7e-11, P = 9.7e-11
 Identities = 67/250 (26%), Positives = 107/250 (42%)

Query:    10 LGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVYCTYK 69
             + DL  D+  E LSR+P KSL ++K  C  W  L +DP+F+ K+  +     ++V    +
Sbjct:     3 ISDLPHDLESEILSRVPAKSLAKWKTTCKRWYALFRDPSFVKKNFDKAGGREMIVLMNSR 62

Query:    70 NPDDRDPFDDLITYFSVFPDRTLTDLHFQDLEPIMRGIHIGPY---DG-IFCLLKSHTLI 125
                +      +   F    + T   +   D     +G+ I      DG I C     T +
Sbjct:    63 VYSNSVNLQGINNRFDPSMEVTGKLIKLND----SKGVDISAIFHCDGLILCTTTESTGL 118

Query:   126 NLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVT-GDFKLVLILTLWNDQRDSFH 184
              +WN    E R +   +PR+       YA +  G    +   +K++     + DQ  S  
Sbjct:   119 VVWNPCTGEIRCI---KPRIFYRCNDRYA-LGYGNSKSSCHSYKILRSCCYYVDQNLSLM 174

Query:   185 DFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMS 244
               +   +Y+FST+SWRDL G ++  D M+     V L G  YWV    +    +  F  S
Sbjct:   175 A-AEFEIYDFSTDSWRDL-G-DITRD-MIVYSSGVSLKGNTYWVSGSKEKGFFMRYFDFS 230

Query:   245 NEVFQEIKGP 254
              EVF  +  P
Sbjct:   231 KEVFGRLPLP 240

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090577 AT3G17540 "AT3G17540" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 2.9e-10, P = 2.9e-10
 Identities = 76/312 (24%), Positives = 134/312 (42%)

Query:     6 RVKTLGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVY 65
             +   + DL  ++  E LSR+P KSL +    C  W  L +DP F+ K+  + +  RLM++
Sbjct:     3 KTMVISDLPHEIESEILSRVPTKSLAKLHTTCKRWYALFRDPRFVKKNFGKSER-RLMLH 61

Query:    66 CT---YKNPDDRDPFDDLITYFSVFPDRTLTDLHFQDLEPIMRGIHIGPYDG-IFCLLKS 121
                  YK  DD     +       F  + L++L   +   I +  H    DG I C  K 
Sbjct:    62 SNFGVYKITDDLHGILNSGDPSLEFTSK-LSNLKISEDLTITKIFHC---DGLILCSTKE 117

Query:   122 HTLINLWNVSLNEYRGL-PECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQR 180
             +T + +WN    + R + P  R R        Y N          ++K++     +NDQ 
Sbjct:   118 NTRLVVWNPCTGQTRWIKPSKRYRSDDSYCLGYVNSKSSYH----NYKILRYCFYYNDQD 173

Query:   181 DSFHDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILA 240
                 +F    +Y+FS+ SWR L  +  R ++ +   + + L G  Y+V    +    +L 
Sbjct:   174 ACVSEFE---IYDFSSESWRVLDDYCTR-EWGLF-CHGMSLKGNTYFVAGEKETGFFMLY 228

Query:   241 FSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSD--KFAHSFELWIMKG 298
             F    E F+ +  P +P  +  + S  T  +     + L++L+ +   F++   +W+   
Sbjct:   229 FDFKTERFERL--P-LPYQS--FDSEDTAVLSIVGGEKLAVLHQNIQSFSNEMRIWVTNK 283

Query:   299 GFWIKHLTFGPF 310
                 K LT+  F
Sbjct:   284 IDEAKDLTWSNF 295

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162321 AT5G42460 "AT5G42460" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 79/312 (25%), Positives = 142/312 (45%)

Query:    10 LGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHL-----KRDDN----- 59
             + DL  D++ E LSR+P+ SL   +  C  W DL KD +F+ K +     K+ ++     
Sbjct:     4 MSDLPRDLLAEILSRVPLTSLRAVRLTCKKWNDLSKDRSFLKKQIVETKKKQLESKEIEV 63

Query:    60 --MR-LMVYCTYKNPDDR-DP-FDDLITYFSVFPDRTLTDLHFQDLEPIMRGIHIGPYDG 114
               MR   VY T  +  +  DP F    T  S+  D      H Q ++ + R  H    DG
Sbjct:    64 IMMRNFRVYLTSIDIHNNVDPSFTPKGTLISLSDDAN----HHQ-VDNVSRVFHC---DG 115

Query:   115 IF-CLLKS-HTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLI 172
             +  C+ K  H  + +WN    + R +   +PR   + + +YA   LG D    + K++ +
Sbjct:   116 LLLCITKDLHYRLVVWNPYFGQTRWI---QPRNSYHRKDNYA---LGYD-EKKNHKILRL 168

Query:   173 LTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYN--VYLNGYCYWVVC 230
                +   R+   +F    +Y+F +NSW+ +   ++  D+ +   YN  + L G  YW   
Sbjct:   169 KDNYYAPRERICEFE---LYSFESNSWKVV--LDVSPDWYIPS-YNRGLSLKGNTYWYAT 222

Query:   231 RPDYS-KAILAFSMSNEVFQEIKGPSVP------QTTTYYQSVKTPWMLGTYDDCLSLLY 283
                 +   ++ F  + E F    GP +P      ++ TY + V T   +G  ++ L++L+
Sbjct:   223 EKHVNVDFLICFDFTTEKF----GPRLPLPFNATESPTY-EDVVTLSSVG--EEQLAVLF 275

Query:   284 SDKFAHSFELWI 295
               ++    E+W+
Sbjct:   276 QSEYTLMMEIWV 287

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2202023 AT1G12170 "AT1G12170" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 4.2e-09, P = 4.2e-09
 Identities = 87/363 (23%), Positives = 150/363 (41%)

Query:    16 DMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLM-----VYCTYKN 70
             +++ E L R+P  SL RFK VC  W  L K  +F+  HL R     L+     +Y    N
Sbjct:     9 ELVEEILYRVPPLSLTRFKIVCKQWNTLFKSKSFVNNHLVRVRPQFLLWTDSKMYSVSVN 68

Query:    71 PDDRDPFDDLITYFSVFPDRTLTDLHFQDLEPIMRGIHIGPYDGI-FCLLKS-HTLINLW 128
              +D    D         P     D+ +  L   MR  +  P DG+ FC   S      +W
Sbjct:    69 LNDDQKID-----MRELP----LDIPY--LNNFMR-TYFTPCDGLLFCDSWSWRKKAAIW 116

Query:   129 NVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHD--F 186
             N  L + + +   + +   +T   +  I  G D    D    +I +   ++R    D  +
Sbjct:   117 NPWLRQTKWIEYSKEKT--FT---FRGI--GYDSGRPDKGHKIIGSSIYNKRKLIEDPLY 169

Query:   187 SHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAIL-AFSMSN 245
               V +Y F TN W+ +  F    +  +  + +V LNG  YWVV   +  +  + +F  S 
Sbjct:   170 RSVEIYTFETNGWKSMNTFSEEGE--IRPLSDVSLNGNLYWVVSNGETHECFIESFDFSK 227

Query:   246 EVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFA--HSFELWIMKGGF--- 300
             E+++     ++P     Y S   P +     D LS+L   + A  ++ E+W+ K      
Sbjct:   228 EIYKCFC--TLPWN---YNSFHVPVLSTFRKDRLSVLKRKRMAETNNIEIWVTKNKINDD 282

Query:   301 -----WIKHLTFGPFIETYQPLGFW----RKDEFLL--ESSDKRVILYDSRYHEMRDLGI 349
                  WIK +T    I +     F+     +  F++  E  + ++ +Y  R + +  + I
Sbjct:   283 GEPVAWIKFMTVSIAISSNSSPSFFIDNVYQKSFIMCCEDENNKLCVYIVRGNALTKIQI 342

Query:   350 TGL 352
              G+
Sbjct:   343 VGV 345

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2119787 AT4G19940 "AT4G19940" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 92/364 (25%), Positives = 150/364 (41%)

Query:    16 DMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVYCTYKNPDDRD 75
             D++IE L+RLP KSLMRFK V   W  L+   NF  + LK     RL + C   +  D  
Sbjct:    38 DLVIEILTRLPAKSLMRFKSVSKLWSSLICSRNFTNRLLKLSSPPRLFM-CL--SSSDNS 94

Query:    76 PFDDLITYFSVFPDRTLT---DLHFQDLE-PIMRGIHIGP-YDGIFCLLKSHTLINLWNV 130
                 ++   S  PD  +T    +  QDL  P M+G  I   + G+ CL+K  +   ++N 
Sbjct:    95 HLKTVLLSLSSPPDSDITMSSSVIDQDLTMPGMKGYQISHVFRGLMCLVKKSSA-QIYNT 153

Query:   131 SLNEYRGLPECRPRLPCYTRTHYANIA--LGLDLVTGDFKLVLILTLWNDQRDSFHDFSH 188
             +  +   LP+               I   +G D V   +K+V I++  +D+ + +   S 
Sbjct:   154 TTRQLVVLPDIEESTILAEEHKSKKIMYHIGHDPVYDQYKVVCIVSRASDEVEEYTFLSE 213

Query:   189 VAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNG---YCYWVVCRPDYSKAILAFSMSN 245
               V        R  +    ++   V     + L+G   Y  WV  R   ++ ++ F   +
Sbjct:   214 HWVLLLEGEGSRRWRKISCKYPPHVPLGQGLTLSGRMHYLAWV--RVSDNRVLVIFDTHS 271

Query:   246 EVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDK--FAHSFELWIMKG---GF 300
             E F  ++ P       ++   K   +L  Y   +++L   K       ELW+++      
Sbjct:   272 EEFSMLQVPG----DIFW---KYNGLL-EYGGKIAILNYTKVDIEGVMELWVVEDEEKNL 323

Query:   301 WI-KHLTFGPF-------IETYQPLGFWRKDEFLLESS--DKRV---ILYDSRYHEMRDL 347
             W  K L   P        I +   LG  R  E +L     DK V   +LYD + + +R +
Sbjct:   324 WSSKILVVNPLQLQMVNSIISLTVLGTTRNGEVILVPGPEDKTVFNILLYDLQKNHIRKI 383

Query:   348 GITG 351
              I G
Sbjct:   384 EIKG 387

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00120932 hypothetical protein (367 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	371
TIGR01640	230	TIGR01640, F_box_assoc_1, F-box protein interactio	2e-13
pfam00646	48	pfam00646, F-box, F-box domain	1e-05
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	0.001

>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 58/245 (23%), Positives = 92/245 (37%), Gaps = 37/245 (15%)

Query: 109 IGPYDGIFCLLKSHTLINLWNVSLNEYRGLPECRPRLPCY-TRTHYANIALGLDLVTGDF 167
           + P DG+ C      L+ +WN S  + R LP              Y    LG D +   +
Sbjct: 1   VVPCDGLICFSYGKRLV-VWNPSTGQSRWLP-TPKSRRSNKESDTYF---LGYDPIEKQY 55

Query: 168 KLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYW 227
           K++         R    + S   VY   +NSWR ++       + +     V +NG  Y+
Sbjct: 56  KVLCFS-----DRSGNRNQSEHQVYTLGSNSWRTIECSPPH--HPLKSR-GVCINGVLYY 107

Query: 228 VV----CRPDYSKAILAFSMSNEVFQE-IKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLL 282
           +       PDY   I++F +S+E F+E I  P     +  Y S      L  Y   L++L
Sbjct: 108 LAYTLKTNPDYF--IVSFDVSSERFKEFIPLPCGNSDSVDYLS------LINYKGKLAVL 159

Query: 283 YSDKFAHSFELWIMK---GGFWIKHLTFGPFIETY-----QPLGF-WRKDEFLL-ESSDK 332
              K  ++F+LW++       W K  T                GF  + +  L  E  + 
Sbjct: 160 KQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENP 219

Query: 333 RVILY 337
             I Y
Sbjct: 220 FYIFY 224

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 19/47 (40%), Positives = 24/47 (51%)

Query: 9  TLGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLK 55
          +L DL DD+++E LSRL  K L+R   V   W  LV       K L 
Sbjct: 2  SLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 35.5 bits (83), Expect = 0.001
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 13 LSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKH 53
          L D+++ E LS+L  K L+R + V   W  L+   +F +K 
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	371
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	100.0
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	99.68
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	99.65
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	99.37
PHA02713	557	hypothetical protein; Provisional	98.95
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.78
PHA02790	480	Kelch-like protein; Provisional	98.74
PHA02713	557	hypothetical protein; Provisional	98.73
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.71
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.67
PHA03098	534	kelch-like protein; Provisional	98.65
PLN02153	341	epithiospecifier protein	98.62
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	98.61
PLN02193	470	nitrile-specifier protein	98.59
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.59
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	98.48
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	98.47
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	98.4
PHA03098	534	kelch-like protein; Provisional	98.25
PHA02790	480	Kelch-like protein; Provisional	98.24
PLN02153	341	epithiospecifier protein	98.18
PLN02193	470	nitrile-specifier protein	98.1
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	97.94
KOG1230	521	consensus Protein containing repeated kelch motifs	97.92
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	97.82
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.32
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	97.23
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	96.78
KOG4693	392	consensus Uncharacterized conserved protein, conta	96.44
KOG4693	392	consensus Uncharacterized conserved protein, conta	96.24
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	96.24
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.79
KOG1230	521	consensus Protein containing repeated kelch motifs	95.39
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	95.23
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	93.75
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	93.61
smart00284	255	OLF Olfactomedin-like domains.	93.13
PF13964	50	Kelch_6: Kelch motif	92.82
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.5
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	92.21
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	91.68
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	90.93
smart00612	47	Kelch Kelch domain.	88.22
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	88.08
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	87.72
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	86.75
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	85.5
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	84.61
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	84.18
PF07762	131	DUF1618: Protein of unknown function (DUF1618); In	82.87
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	80.9

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=100.00  E-value=2.6e-35  Score=259.15  Aligned_cols=216  Identities=24%  Similarity=0.362  Sum_probs=162.6

Q ss_pred             EeeecceEEEeecCCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcce
Q 036281          109 IGPYDGIFCLLKSHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSH  188 (371)
Q Consensus       109 ~~s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~  188 (371)
                      ++|||||||+.....+ +||||+||+++.||+++.... +.  ....++||||+.+++||||++......     .....
T Consensus         1 ~~sCnGLlc~~~~~~~-~V~NP~T~~~~~LP~~~~~~~-~~--~~~~~~~G~d~~~~~YKVv~~~~~~~~-----~~~~~   71 (230)
T TIGR01640         1 VVPCDGLICFSYGKRL-VVWNPSTGQSRWLPTPKSRRS-NK--ESDTYFLGYDPIEKQYKVLCFSDRSGN-----RNQSE   71 (230)
T ss_pred             CcccceEEEEecCCcE-EEECCCCCCEEecCCCCCccc-cc--ccceEEEeecccCCcEEEEEEEeecCC-----CCCcc
Confidence            4799999999887777 999999999999997754211 11  112589999999999999999754211     12578


Q ss_pred             EEEEEcCCCceeecCccccccceeccccceEEECceEEEEEecCC--CCcEEEEEECCCceEE-EeCCCCCCCCCccccc
Q 036281          189 VAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQ-EIKGPSVPQTTTYYQS  265 (371)
Q Consensus       189 ~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~-~i~~P~~~~~~~~~~~  265 (371)
                      ++||++++++||.++..   .+.......+|++||++||++....  ....|++||+++|+|+ .+++|.....      
T Consensus        72 ~~Vys~~~~~Wr~~~~~---~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~------  142 (230)
T TIGR01640        72 HQVYTLGSNSWRTIECS---PPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSD------  142 (230)
T ss_pred             EEEEEeCCCCccccccC---CCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccc------
Confidence            99999999999999732   1211122248999999999997542  1237999999999999 5888875432      


Q ss_pred             CCCcceEEEeCCeEEEEecCCCCCEEEEEEeeC---CceeEEEEecC--CCcc---eeeeEEeeCCEEEEEEcC--Ce-E
Q 036281          266 VKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKG---GFWIKHLTFGP--FIET---YQPLGFWRKDEFLLESSD--KR-V  334 (371)
Q Consensus       266 ~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~---~~W~~~~~i~~--~~~~---~~~~~~~~~~~il~~~~~--~~-l  334 (371)
                      ......|++++|+||++........++||+|++   ..|+|.++|+.  ...+   ..|+++.++|+|++....  .. +
T Consensus       143 ~~~~~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~  222 (230)
T TIGR01640       143 SVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYI  222 (230)
T ss_pred             cccceEEEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEE
Confidence            013467999999999977533345699999997   57999999973  2222   348888899999998754  34 9


Q ss_pred             EEEeCCCC
Q 036281          335 ILYDSRYH  342 (371)
Q Consensus       335 ~~yd~~~~  342 (371)
                      ++||++++
T Consensus       223 ~~y~~~~~  230 (230)
T TIGR01640       223 FYYNVGEN  230 (230)
T ss_pred             EEEeccCC
Confidence            99999885

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=99.68  E-value=1e-15  Score=121.80  Aligned_cols=105  Identities=23%  Similarity=0.417  Sum_probs=81.8

Q ss_pred             eEEECceEEEEEecC-CCCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecCCC--CCEEEEE
Q 036281          218 NVYLNGYCYWVVCRP-DYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKF--AHSFELW  294 (371)
Q Consensus       218 ~v~~~G~lywl~~~~-~~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~--~~~~~iW  294 (371)
                      |+++||++||++... .....|++||+++|+|+.|++|....      .......|++++|+||++.....  ...++||
T Consensus         1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~------~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iW   74 (129)
T PF08268_consen    1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPY------SSDCSSTLIEYKGKLALVSYNDQGEPDSIDIW   74 (129)
T ss_pred             CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeec------cccCccEEEEeCCeEEEEEecCCCCcceEEEE
Confidence            589999999999872 25689999999999999999992111      11256789999999999764332  3579999


Q ss_pred             EeeC---CceeEEEEecCCC-------cceeeeEEeeCCEEEEE
Q 036281          295 IMKG---GFWIKHLTFGPFI-------ETYQPLGFWRKDEFLLE  328 (371)
Q Consensus       295 ~L~~---~~W~~~~~i~~~~-------~~~~~~~~~~~~~il~~  328 (371)
                      +|+|   ++|++.+.+-|..       ....++++.++|+|++.
T Consensus        75 vLeD~~k~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~  118 (129)
T PF08268_consen   75 VLEDYEKQEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA  118 (129)
T ss_pred             EeeccccceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence            9998   7899987765432       23567888889999887

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=99.65  E-value=5.6e-15  Score=122.55  Aligned_cols=138  Identities=20%  Similarity=0.327  Sum_probs=98.1

Q ss_pred             eEEECceEEEEEecCCCC--cEEEEEECCCceE-EEeCCCCCCCCCcccccCCCcceEEE-eCCeEEEEecCCCCCEEEE
Q 036281          218 NVYLNGYCYWVVCRPDYS--KAILAFSMSNEVF-QEIKGPSVPQTTTYYQSVKTPWMLGT-YDDCLSLLYSDKFAHSFEL  293 (371)
Q Consensus       218 ~v~~~G~lywl~~~~~~~--~~Il~fD~~~e~~-~~i~~P~~~~~~~~~~~~~~~~~L~~-~~g~L~l~~~~~~~~~~~i  293 (371)
                      +|++||++||++......  ..|++||+++|+| +.+++|.....      ......|.+ .+|+||++........++|
T Consensus         1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~------~~~~~~L~~v~~~~L~~~~~~~~~~~~~I   74 (164)
T PF07734_consen    1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDD------DDDSVSLSVVRGDCLCVLYQCDETSKIEI   74 (164)
T ss_pred             CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCc------cCCEEEEEEecCCEEEEEEeccCCccEEE
Confidence            599999999999876422  2799999999999 88999987652      114566754 5789999764455667999


Q ss_pred             EEeeC-----CceeEEEEecCCC--cc-----eeeeEEeeCCEEEEEEc--C-----CeEEEEeCCCCeEEEEEEecc--
Q 036281          294 WIMKG-----GFWIKHLTFGPFI--ET-----YQPLGFWRKDEFLLESS--D-----KRVILYDSRYHEMRDLGITGL--  352 (371)
Q Consensus       294 W~L~~-----~~W~~~~~i~~~~--~~-----~~~~~~~~~~~il~~~~--~-----~~l~~yd~~~~~~~~v~~~~~--  352 (371)
                      |+|++     .+|+|.++|+...  ..     ...+.+.+++++++...  .     ..++.|+ +++..+++.+...  
T Consensus        75 Wvm~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~  153 (164)
T PF07734_consen   75 WVMKKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSS  153 (164)
T ss_pred             EEEeeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCC
Confidence            99994     6899999998332  11     12234455667776632  1     4588888 7788888877432  


Q ss_pred             eeEE-EEeEee
Q 036281          353 WFSV-HILKES  362 (371)
Q Consensus       353 ~~~~-~~y~~S  362 (371)
                      .++. ..|+||
T Consensus       154 ~~~~~~~YvpS  164 (164)
T PF07734_consen  154 CWPSICNYVPS  164 (164)
T ss_pred             CCCCEEEECCC
Confidence            2344 888887

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=99.37  E-value=1.7e-10  Score=105.69  Aligned_cols=323  Identities=12%  Similarity=0.077  Sum_probs=160.0

Q ss_pred             ccCCCCCHHHHHHHHhcCCcc-ccceeeecccchhhhcCChHHHHHHhccCCCCCEEEEEeecCCCCCCCCCCceeEEEE
Q 036281            8 KTLGDLSDDMMIETLSRLPVK-SLMRFKCVCISWCDLVKDPNFIYKHLKRDDNMRLMVYCTYKNPDDRDPFDDLITYFSV   86 (371)
Q Consensus         8 ~~~~~LP~dll~~IL~rLP~k-sl~r~r~VcK~W~~li~~p~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (371)
                      ..|+.||+|||..|..|||.+ +++|||+|||+||+.+....   +......+ +.+++.... |.  .+         +
T Consensus         2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~~~~~~~-~~~~~~~~~-~~--~~---------~   65 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KKNPFRTR-PLILFNPIN-PS--ET---------L   65 (373)
T ss_pred             CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---ccCCcccc-cccccCccc-CC--CC---------c
Confidence            458999999999999999855 89999999999999876410   00000111 222211100 00  00         0


Q ss_pred             ccCCCcccccCcCCCCccceEE---EeeecceEEEee-c---CCceEEEeccccccccCCCCCCCCCCCCCC-ceeeEEE
Q 036281           87 FPDRTLTDLHFQDLEPIMRGIH---IGPYDGIFCLLK-S---HTLINLWNVSLNEYRGLPECRPRLPCYTRT-HYANIAL  158 (371)
Q Consensus        87 ~~~~~~~~~~~~~~~~p~~~~~---~~s~~GLl~~~~-~---~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~-~~~~~~~  158 (371)
                      .+.+..+......+....-+.+   -++..|+|.-.. +   .+. .+.||+++....+|+.......+.-. ....+.+
T Consensus        66 ~~~~~~~~~~~~~ls~~~~~r~~~~~~~~~~WLik~~~~~~~~~~-~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l  144 (373)
T PLN03215         66 TDDRSYISRPGAFLSRAAFFRVTLSSSPSKGWLIKSDMDVNSGRF-HLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQV  144 (373)
T ss_pred             cccccccccccceeeeeEEEEeecCCCCCCCcEEEEeccccCCcc-EecCccccCccCCCCccceeeeeEEEEccceEEE
Confidence            0000000000000000000111   145678887654 2   466 99999999988777543332222100 0001111


Q ss_pred             -eccCC---CCCeEEEEEeeEecCCCCCCCCcceEEEEEcC------CCceeecCccccccceeccccceEEECceEEEE
Q 036281          159 -GLDLV---TGDFKLVLILTLWNDQRDSFHDFSHVAVYNFS------TNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWV  228 (371)
Q Consensus       159 -g~d~~---~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~------~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl  228 (371)
                       +.+..   ...|+-+.+......+   ......+-|+..+      .++|..++..  ...    ...-++.+|.+|-+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vl~i~~~g~l~~w~~~~Wt~l~~~--~~~----~~DIi~~kGkfYAv  215 (373)
T PLN03215        145 LDWAKRRETRPGYQRSALVKVKEGD---NHRDGVLGIGRDGKINYWDGNVLKALKQM--GYH----FSDIIVHKGQTYAL  215 (373)
T ss_pred             EecccccccccceeEEEEEEeecCC---CcceEEEEEeecCcEeeecCCeeeEccCC--Cce----eeEEEEECCEEEEE
Confidence             11100   0113212221111110   0001222333222      3678877521  111    23669999999998


Q ss_pred             EecCCCCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecC--C-------------CCCEEEE
Q 036281          229 VCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSD--K-------------FAHSFEL  293 (371)
Q Consensus       229 ~~~~~~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~--~-------------~~~~~~i  293 (371)
                      ...+    .+.++|.+- +.+.+..+-. .....+ ..+....|+|..|+|.++...  .             ....++|
T Consensus       216 D~~G----~l~~i~~~l-~i~~v~~~i~-~~~~~g-~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~V  288 (373)
T PLN03215        216 DSIG----IVYWINSDL-EFSRFGTSLD-ENITDG-CWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKV  288 (373)
T ss_pred             cCCC----eEEEEecCC-ceeeecceec-ccccCC-cccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEE
Confidence            6544    577777432 2222221111 000000 001346799999999996531  1             1357899


Q ss_pred             EEeeC--CceeEEEEecCCCc---ceeeeEE-------eeCCEEEEEEcCCeEEEEeCCCCeEEEEEEe--cceeEE-EE
Q 036281          294 WIMKG--GFWIKHLTFGPFIE---TYQPLGF-------WRKDEFLLESSDKRVILYDSRYHEMRDLGIT--GLWFSV-HI  358 (371)
Q Consensus       294 W~L~~--~~W~~~~~i~~~~~---~~~~~~~-------~~~~~il~~~~~~~l~~yd~~~~~~~~v~~~--~~~~~~-~~  358 (371)
                      +.++.  ..|+++.+++-..-   ....+++       .+.+-|++. .+....+||++.++...+...  +...++ ..
T Consensus       289 fklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFt-dd~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~  367 (373)
T PLN03215        289 YKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFT-EDTMPKVFKLDNGNGSSIETTISESSQSSFEM  367 (373)
T ss_pred             EEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEE-CCCcceEEECCCCCccceEeecCccccchhee
Confidence            99987  88999888763210   0111111       124557776 456688999999997766443  222233 66


Q ss_pred             eEeeee
Q 036281          359 LKESLI  364 (371)
Q Consensus       359 y~~Sl~  364 (371)
                      |++|++
T Consensus       368 ~~~~~~  373 (373)
T PLN03215        368 FVPSFL  373 (373)
T ss_pred             eccccC
Confidence            776653

>PHA02713 hypothetical protein; Provisional

Probab=98.95  E-value=1.8e-07  Score=92.57  Aligned_cols=192  Identities=10%  Similarity=0.041  Sum_probs=121.0

Q ss_pred             EEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeecCcc
Q 036281          126 NLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGF  205 (371)
Q Consensus       126 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~~~~  205 (371)
                      ..+||.+++|..+|+.+..+.        .++.+.  .  +-||..++....     ......+|.|+..+++|..++. 
T Consensus       323 ~~Yd~~~n~W~~~~~m~~~R~--------~~~~~~--~--~g~IYviGG~~~-----~~~~~sve~Ydp~~~~W~~~~~-  384 (557)
T PHA02713        323 YKINIENKIHVELPPMIKNRC--------RFSLAV--I--DDTIYAIGGQNG-----TNVERTIECYTMGDDKWKMLPD-  384 (557)
T ss_pred             EEEECCCCeEeeCCCCcchhh--------ceeEEE--E--CCEEEEECCcCC-----CCCCceEEEEECCCCeEEECCC-
Confidence            899999999999998874321        122111  1  125666553211     1124579999999999999874 


Q ss_pred             ccccceeccccceEEECceEEEEEecCC--------------------CCcEEEEEECCCceEEEeC-CCCCCCCCcccc
Q 036281          206 EMRFDYMVDRIYNVYLNGYCYWVVCRPD--------------------YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQ  264 (371)
Q Consensus       206 ~~~~~~~~~~~~~v~~~G~lywl~~~~~--------------------~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~  264 (371)
                         ++........+.++|.+|-+.....                    ....+.+||+++++|+.+. +|...       
T Consensus       385 ---mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r-------  454 (557)
T PHA02713        385 ---MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGT-------  454 (557)
T ss_pred             ---CCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccc-------
Confidence               3333223466889999999875421                    0246899999999999874 22221       


Q ss_pred             cCCCcceEEEeCCeEEEEecCCC----CCEEEEEEeeC-CceeEEEEecCCCcceeeeEEeeCCEEEEEEcCC---eEEE
Q 036281          265 SVKTPWMLGTYDDCLSLLYSDKF----AHSFELWIMKG-GFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDK---RVIL  336 (371)
Q Consensus       265 ~~~~~~~L~~~~g~L~l~~~~~~----~~~~~iW~L~~-~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~---~l~~  336 (371)
                         ....++.++|+|+++.-...    ...++.+-.+. ..|+....++ .+.......+. +|+|++..+..   .+-.
T Consensus       455 ---~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~-~~r~~~~~~~~-~~~iyv~Gg~~~~~~~e~  529 (557)
T PHA02713        455 ---IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE-SRLSALHTILH-DNTIMMLHCYESYMLQDT  529 (557)
T ss_pred             ---ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC-cccccceeEEE-CCEEEEEeeecceeehhh
Confidence               23457889999999863111    12334444443 4799876553 22122223332 77888875422   4889


Q ss_pred             EeCCCCeEEEEEEe
Q 036281          337 YDSRYHEMRDLGIT  350 (371)
Q Consensus       337 yd~~~~~~~~v~~~  350 (371)
                      ||++|++|..+.-+
T Consensus       530 yd~~~~~W~~~~~~  543 (557)
T PHA02713        530 FNVYTYEWNHICHQ  543 (557)
T ss_pred             cCcccccccchhhh
Confidence            99999999988443

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.78  E-value=1.5e-09  Score=69.77  Aligned_cols=42  Identities=26%  Similarity=0.608  Sum_probs=36.4

Q ss_pred             CCCCCHHHHHHHHhcCCccccceeeecccchhhhcCChHHHH
Q 036281           10 LGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIY   51 (371)
Q Consensus        10 ~~~LP~dll~~IL~rLP~ksl~r~r~VcK~W~~li~~p~F~~   51 (371)
                      +..||+|++.+||..||++++.++..|||+|+.++.++.+-+
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~   42 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR   42 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence            468999999999999999999999999999999998885544

>PHA02790 Kelch-like protein; Provisional

Probab=98.74  E-value=1.4e-06  Score=84.99  Aligned_cols=182  Identities=12%  Similarity=0.034  Sum_probs=115.2

Q ss_pred             EEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeecCcc
Q 036281          126 NLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGF  205 (371)
Q Consensus       126 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~~~~  205 (371)
                      ..+||.+++|..+|+++..+.     .   ++...    -+-+|..++....        ...+|.|+..+++|..++. 
T Consensus       290 ~~Ydp~~~~W~~~~~m~~~r~-----~---~~~v~----~~~~iYviGG~~~--------~~sve~ydp~~n~W~~~~~-  348 (480)
T PHA02790        290 IAVNYISNNWIPIPPMNSPRL-----Y---ASGVP----ANNKLYVVGGLPN--------PTSVERWFHGDAAWVNMPS-  348 (480)
T ss_pred             EEEECCCCEEEECCCCCchhh-----c---ceEEE----ECCEEEEECCcCC--------CCceEEEECCCCeEEECCC-
Confidence            789999999999998764321     1   11111    1135555543211        2458999999999999874 


Q ss_pred             ccccceeccccceEEECceEEEEEecCCCCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecC
Q 036281          206 EMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSD  285 (371)
Q Consensus       206 ~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~  285 (371)
                         ++.......++.++|.+|-+.........+-.||+++++|+.++.+....         .....+..+|+|+++.. 
T Consensus       349 ---l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r---------~~~~~~~~~~~IYv~GG-  415 (480)
T PHA02790        349 ---LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH---------YKSCALVFGRRLFLVGR-  415 (480)
T ss_pred             ---CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc---------ccceEEEECCEEEEECC-
Confidence               33322234678999999998764322346788999999999874322111         23456679999999762 


Q ss_pred             CCCCEEEEEEeeCCceeEEEEecCCCcceeeeEEeeCCEEEEEEc------CCeEEEEeCCCCeEEEE
Q 036281          286 KFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESS------DKRVILYDSRYHEMRDL  347 (371)
Q Consensus       286 ~~~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~~~~~~~v  347 (371)
                          ..+++-.+...|+..-.+ +.+......++ -+|+|++..+      ...+-.||+++++|...
T Consensus       416 ----~~e~ydp~~~~W~~~~~m-~~~r~~~~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~  477 (480)
T PHA02790        416 ----NAEFYCESSNTWTLIDDP-IYPRDNPELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW  477 (480)
T ss_pred             ----ceEEecCCCCcEeEcCCC-CCCccccEEEE-ECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence                234444444789976543 22212222333 3678888743      14588999999999753

>PHA02713 hypothetical protein; Provisional

Probab=98.73  E-value=1.2e-06  Score=86.85  Aligned_cols=192  Identities=11%  Similarity=0.114  Sum_probs=117.3

Q ss_pred             EEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeecCcc
Q 036281          126 NLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGF  205 (371)
Q Consensus       126 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~~~~  205 (371)
                      ..+||.+++|..+++.+....        ..+.+.  .  +-+|+.++.....    ......++.|+..++.|..++. 
T Consensus       275 ~~yd~~~~~W~~l~~mp~~r~--------~~~~a~--l--~~~IYviGG~~~~----~~~~~~v~~Yd~~~n~W~~~~~-  337 (557)
T PHA02713        275 LVYNINTMEYSVISTIPNHII--------NYASAI--V--DNEIIIAGGYNFN----NPSLNKVYKINIENKIHVELPP-  337 (557)
T ss_pred             EEEeCCCCeEEECCCCCcccc--------ceEEEE--E--CCEEEEEcCCCCC----CCccceEEEEECCCCeEeeCCC-
Confidence            789999999999987774311        111111  1  1245555432100    1124578999999999998874 


Q ss_pred             ccccceeccccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCCcceEEEeCCeEEEE
Q 036281          206 EMRFDYMVDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTYDDCLSLL  282 (371)
Q Consensus       206 ~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~  282 (371)
                         ++........+.++|.+|-+.....  ....+-+||+.+++|+.+. +|...          .....+.++|+|+++
T Consensus       338 ---m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r----------~~~~~~~~~g~IYvi  404 (557)
T PHA02713        338 ---MIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIAL----------SSYGMCVLDQYIYII  404 (557)
T ss_pred             ---CcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCccc----------ccccEEEECCEEEEE
Confidence               3332223467899999999986532  2346899999999999874 34332          234567889999997


Q ss_pred             ecCCC---------------------CCEEEEEEeeCCceeEEEEecCCCcceeeeEEeeCCEEEEEEcC-------CeE
Q 036281          283 YSDKF---------------------AHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSD-------KRV  334 (371)
Q Consensus       283 ~~~~~---------------------~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~-------~~l  334 (371)
                      .-...                     ..+++.+-.+...|+.+-.+. .+......++ -+|+|++..+.       ..+
T Consensus       405 GG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~-~~r~~~~~~~-~~~~IYv~GG~~~~~~~~~~v  482 (557)
T PHA02713        405 GGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW-TGTIRPGVVS-HKDDIYVVCDIKDEKNVKTCI  482 (557)
T ss_pred             eCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC-cccccCcEEE-ECCEEEEEeCCCCCCccceeE
Confidence            63111                     122333333337888655432 1112222333 36788887531       236


Q ss_pred             EEEeCCC-CeEEEEEE
Q 036281          335 ILYDSRY-HEMRDLGI  349 (371)
Q Consensus       335 ~~yd~~~-~~~~~v~~  349 (371)
                      ..||+++ ++|+.+.-
T Consensus       483 e~Ydp~~~~~W~~~~~  498 (557)
T PHA02713        483 FRYNTNTYNGWELITT  498 (557)
T ss_pred             EEecCCCCCCeeEccc
Confidence            7999999 89998743

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.71  E-value=1.1e-06  Score=87.00  Aligned_cols=207  Identities=10%  Similarity=0.106  Sum_probs=132.9

Q ss_pred             EEEeeecceEEEee--c------CCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecC
Q 036281          107 IHIGPYDGIFCLLK--S------HTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWND  178 (371)
Q Consensus       107 ~~~~s~~GLl~~~~--~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~  178 (371)
                      .-++..+|.|-+.-  +      +.. ..+||.+.+|..+|+....+.        .+|.+.    -..++.+++.... 
T Consensus       326 ~~~~~~~~~lYv~GG~~~~~~~l~~v-e~YD~~~~~W~~~a~M~~~R~--------~~~v~~----l~g~iYavGG~dg-  391 (571)
T KOG4441|consen  326 VGVAVLNGKLYVVGGYDSGSDRLSSV-ERYDPRTNQWTPVAPMNTKRS--------DFGVAV----LDGKLYAVGGFDG-  391 (571)
T ss_pred             ccEEEECCEEEEEccccCCCcccceE-EEecCCCCceeccCCccCccc--------cceeEE----ECCEEEEEecccc-
Confidence            34555566554332  1      345 899999999999999885321        122221    2355555553321 


Q ss_pred             CCCCCCCcceEEEEEcCCCceeecCccccccceeccccceEEECceEEEEEecCC---CCcEEEEEECCCceEEEeC-CC
Q 036281          179 QRDSFHDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD---YSKAILAFSMSNEVFQEIK-GP  254 (371)
Q Consensus       179 ~~~~~~~~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~---~~~~Il~fD~~~e~~~~i~-~P  254 (371)
                          ......+|.|+..++.|..++..    +.......++.++|.+|-+...+.   .-..+-+||+.+++|+.++ ++
T Consensus       392 ----~~~l~svE~YDp~~~~W~~va~m----~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~  463 (571)
T KOG4441|consen  392 ----EKSLNSVECYDPVTNKWTPVAPM----LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMN  463 (571)
T ss_pred             ----ccccccEEEecCCCCcccccCCC----CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcc
Confidence                23366899999999999999743    332224577899999999987543   2378999999999999873 23


Q ss_pred             CCCCCCcccccCCCcceEEEeCCeEEEEecCCC---CCEEEEEEeeCCceeEEEEecCCCcceeeeEE-eeCCEEEEEEc
Q 036281          255 SVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKF---AHSFELWIMKGGFWIKHLTFGPFIETYQPLGF-WRKDEFLLESS  330 (371)
Q Consensus       255 ~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~---~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~-~~~~~il~~~~  330 (371)
                      ...          ....++.++|+|+++.-...   ..+++..-.+...|+.+..+....   ...++ .-++++++..+
T Consensus       464 ~~R----------~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r---s~~g~~~~~~~ly~vGG  530 (571)
T KOG4441|consen  464 TRR----------SGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR---SAVGVVVLGGKLYAVGG  530 (571)
T ss_pred             ccc----------ccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc---ccccEEEECCEEEEEec
Confidence            222          34558899999999773222   333444444447898885443221   11222 23667777643


Q ss_pred             ------CCeEEEEeCCCCeEEEEE
Q 036281          331 ------DKRVILYDSRYHEMRDLG  348 (371)
Q Consensus       331 ------~~~l~~yd~~~~~~~~v~  348 (371)
                            -..+-.||+++++|....
T Consensus       531 ~~~~~~l~~ve~ydp~~d~W~~~~  554 (571)
T KOG4441|consen  531 FDGNNNLNTVECYDPETDTWTEVT  554 (571)
T ss_pred             ccCccccceeEEcCCCCCceeeCC
Confidence                  246889999999998873

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.67  E-value=2.9e-09  Score=68.75  Aligned_cols=45  Identities=38%  Similarity=0.600  Sum_probs=38.2

Q ss_pred             CCCCCHHHHHHHHhcCCccccceeeecccchhhhcCChHHHHHHh
Q 036281           10 LGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHL   54 (371)
Q Consensus        10 ~~~LP~dll~~IL~rLP~ksl~r~r~VcK~W~~li~~p~F~~~~~   54 (371)
                      +..||+|++.+||.+|+.+++++++.|||+|++++.++.+...+.
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~   47 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII   47 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence            467999999999999999999999999999999999999876543

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PHA03098 kelch-like protein; Provisional

Probab=98.65  E-value=1.6e-06  Score=85.91  Aligned_cols=192  Identities=10%  Similarity=0.111  Sum_probs=117.6

Q ss_pred             CceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeec
Q 036281          123 TLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDL  202 (371)
Q Consensus       123 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~  202 (371)
                      .+ +.+||.|++|..+|+.+..+.     .   .+...  ..  =+++.++....     ......+++|+..+++|+..
T Consensus       312 ~v-~~yd~~~~~W~~~~~~~~~R~-----~---~~~~~--~~--~~lyv~GG~~~-----~~~~~~v~~yd~~~~~W~~~  373 (534)
T PHA03098        312 SV-VSYDTKTKSWNKVPELIYPRK-----N---PGVTV--FN--NRIYVIGGIYN-----SISLNTVESWKPGESKWREE  373 (534)
T ss_pred             cE-EEEeCCCCeeeECCCCCcccc-----c---ceEEE--EC--CEEEEEeCCCC-----CEecceEEEEcCCCCceeeC
Confidence            45 899999999999998764211     1   11111  11  23444443211     11245789999999999988


Q ss_pred             CccccccceeccccceEEECceEEEEEecCC---CCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCCcceEEEeCCe
Q 036281          203 KGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD---YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTYDDC  278 (371)
Q Consensus       203 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~---~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~~g~  278 (371)
                      +..    |........+.++|.+|-+.....   ....+..||+.+++|+.+. +|...          .....+..+|+
T Consensus       374 ~~l----p~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r----------~~~~~~~~~~~  439 (534)
T PHA03098        374 PPL----IFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH----------YGGCAIYHDGK  439 (534)
T ss_pred             CCc----CcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc----------cCceEEEECCE
Confidence            643    332223456788999999876321   2256899999999999874 33322          22345678999


Q ss_pred             EEEEecCCCCC----EEEEEEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEEc------CCeEEEEeCCCCeEEE
Q 036281          279 LSLLYSDKFAH----SFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESS------DKRVILYDSRYHEMRD  346 (371)
Q Consensus       279 L~l~~~~~~~~----~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~~~~~~~  346 (371)
                      |+++.-.....    .-.+|..+-  ..|+..-.++ .+......++ -+++|++..+      ...+..||+++++|+.
T Consensus       440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~  517 (534)
T PHA03098        440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN-FPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTNTWTL  517 (534)
T ss_pred             EEEECCccCCCCCcccceEEEecCCCCceeeCCCCC-cccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCCEEEe
Confidence            98876211111    112566554  7898764332 2212222233 3678877643      2469999999999987


Q ss_pred             EE
Q 036281          347 LG  348 (371)
Q Consensus       347 v~  348 (371)
                      +.
T Consensus       518 ~~  519 (534)
T PHA03098        518 FC  519 (534)
T ss_pred             cC
Confidence            73

>PLN02153 epithiospecifier protein

Probab=98.62  E-value=5.5e-06  Score=77.27  Aligned_cols=207  Identities=13%  Similarity=0.097  Sum_probs=116.7

Q ss_pred             CceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeec
Q 036281          123 TLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDL  202 (371)
Q Consensus       123 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~  202 (371)
                      .+ +++||.+++|..+|+.... ++..   .  .+++....  +=||+.+.....     ......+++|+..+++|+.+
T Consensus        51 ~~-~~yd~~~~~W~~~~~~~~~-p~~~---~--~~~~~~~~--~~~iyv~GG~~~-----~~~~~~v~~yd~~t~~W~~~  116 (341)
T PLN02153         51 DL-YVFDFNTHTWSIAPANGDV-PRIS---C--LGVRMVAV--GTKLYIFGGRDE-----KREFSDFYSYDTVKNEWTFL  116 (341)
T ss_pred             cE-EEEECCCCEEEEcCccCCC-CCCc---c--CceEEEEE--CCEEEEECCCCC-----CCccCcEEEEECCCCEEEEe
Confidence            45 9999999999998865321 1100   0  11111101  124555543211     11234789999999999988


Q ss_pred             Ccccc-ccceeccccceEEECceEEEEEecCCC--------CcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEE
Q 036281          203 KGFEM-RFDYMVDRIYNVYLNGYCYWVVCRPDY--------SKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLG  273 (371)
Q Consensus       203 ~~~~~-~~~~~~~~~~~v~~~G~lywl~~~~~~--------~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~  273 (371)
                      +.... ..|........+..+|.+|-+......        -..|.+||+.+.+|..++.+.....      .+....++
T Consensus       117 ~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~------~r~~~~~~  190 (341)
T PLN02153        117 TKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFE------KRGGAGFA  190 (341)
T ss_pred             ccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCC------CCCcceEE
Confidence            64310 112211134567889999988754210        1358899999999998764321100      11234566


Q ss_pred             EeCCeEEEEecCC---------CCCEEEEEEee--CCceeEEEEec--CCCcceeeeEEeeCCEEEEEEcC---------
Q 036281          274 TYDDCLSLLYSDK---------FAHSFELWIMK--GGFWIKHLTFG--PFIETYQPLGFWRKDEFLLESSD---------  331 (371)
Q Consensus       274 ~~~g~L~l~~~~~---------~~~~~~iW~L~--~~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~~---------  331 (371)
                      ..+|+++++.-..         ....-++++++  ...|+++-...  |.+.......+ -+++|++....         
T Consensus       191 ~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~  269 (341)
T PLN02153        191 VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAV-VGKYIIIFGGEVWPDLKGHL  269 (341)
T ss_pred             EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEE-ECCEEEEECcccCCcccccc
Confidence            7899998864110         00112355554  37899876543  32222222222 25677665321         


Q ss_pred             ------CeEEEEeCCCCeEEEEEEe
Q 036281          332 ------KRVILYDSRYHEMRDLGIT  350 (371)
Q Consensus       332 ------~~l~~yd~~~~~~~~v~~~  350 (371)
                            +.++.||+++++|+.+...
T Consensus       270 ~~~~~~n~v~~~d~~~~~W~~~~~~  294 (341)
T PLN02153        270 GPGTLSNEGYALDTETLVWEKLGEC  294 (341)
T ss_pred             ccccccccEEEEEcCccEEEeccCC
Confidence                  2689999999999988643

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=98.61  E-value=3.6e-06  Score=83.27  Aligned_cols=192  Identities=12%  Similarity=0.082  Sum_probs=127.0

Q ss_pred             EEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeecCcc
Q 036281          126 NLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGF  205 (371)
Q Consensus       126 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~~~~  205 (371)
                      ...||.+++|..+.+.+..+.        ..+.+.-.    -+|..++....    +......+++|++.+++|..++..
T Consensus       304 e~yd~~~~~w~~~a~m~~~r~--------~~~~~~~~----~~lYv~GG~~~----~~~~l~~ve~YD~~~~~W~~~a~M  367 (571)
T KOG4441|consen  304 ECYDPKTNEWSSLAPMPSPRC--------RVGVAVLN----GKLYVVGGYDS----GSDRLSSVERYDPRTNQWTPVAPM  367 (571)
T ss_pred             EEecCCcCcEeecCCCCcccc--------cccEEEEC----CEEEEEccccC----CCcccceEEEecCCCCceeccCCc
Confidence            789999999999988875322        13333221    15555543321    123367899999999999998743


Q ss_pred             ccccceeccccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCCcceEEEeCCeEEEE
Q 036281          206 EMRFDYMVDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTYDDCLSLL  282 (371)
Q Consensus       206 ~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~  282 (371)
                          .........+.++|.+|-+...+.  ....|-.||+.+++|+.+. ++...          .....++++|+|+++
T Consensus       368 ----~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r----------~~~gv~~~~g~iYi~  433 (571)
T KOG4441|consen  368 ----NTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRR----------SGHGVAVLGGKLYII  433 (571)
T ss_pred             ----cCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcce----------eeeEEEEECCEEEEE
Confidence                333224467899999999987653  3457999999999999874 33321          345678899999997


Q ss_pred             ec-CCCC---CEEEEEEeeCCceeEEEEecCCCcceeeeEEeeCCEEEEEEcC------CeEEEEeCCCCeEEEEEE
Q 036281          283 YS-DKFA---HSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSD------KRVILYDSRYHEMRDLGI  349 (371)
Q Consensus       283 ~~-~~~~---~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~------~~l~~yd~~~~~~~~v~~  349 (371)
                      .- +...   .+++..--....|+..-.+.-.. ....+++. ++.|++..+.      ..+-.||+++++|..+..
T Consensus       434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R-~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~  508 (571)
T KOG4441|consen  434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR-SGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP  508 (571)
T ss_pred             cCcCCCccccceEEEEcCCCCceeecCCccccc-ccceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence            63 1222   34444444437888876653221 23334443 6788887542      348899999999999953

>PLN02193 nitrile-specifier protein

Probab=98.59  E-value=1.6e-05  Score=77.32  Aligned_cols=205  Identities=10%  Similarity=0.086  Sum_probs=119.5

Q ss_pred             CceEEEeccccccccCCCCCCCCCCCCCCceeeEEE-eccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceee
Q 036281          123 TLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIAL-GLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRD  201 (371)
Q Consensus       123 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~-g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~  201 (371)
                      .+ +++||.+.+|..+|+.... +...   ...... .++     =+++.+.....     ......+++|++.+++|+.
T Consensus       194 ~v-~~yD~~~~~W~~~~~~g~~-P~~~---~~~~~~v~~~-----~~lYvfGG~~~-----~~~~ndv~~yD~~t~~W~~  258 (470)
T PLN02193        194 HL-YVFDLETRTWSISPATGDV-PHLS---CLGVRMVSIG-----STLYVFGGRDA-----SRQYNGFYSFDTTTNEWKL  258 (470)
T ss_pred             cE-EEEECCCCEEEeCCCCCCC-CCCc---ccceEEEEEC-----CEEEEECCCCC-----CCCCccEEEEECCCCEEEE
Confidence            35 8999999999987754211 1100   001111 111     13444432111     1124578999999999999


Q ss_pred             cCccccccceeccccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEEeCCeE
Q 036281          202 LKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCL  279 (371)
Q Consensus       202 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L  279 (371)
                      ++... ..|........+..++.+|.+.....  ....+.+||+.+.+|+.++.|.....      .+....++..+|++
T Consensus       259 l~~~~-~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~------~R~~~~~~~~~gki  331 (470)
T PLN02193        259 LTPVE-EGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFS------IRGGAGLEVVQGKV  331 (470)
T ss_pred             cCcCC-CCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCC------CCCCcEEEEECCcE
Confidence            86431 11221113456778999999875431  23458899999999998865432111      11234566789999


Q ss_pred             EEEecCCCCCEEEEEEeeC--CceeEEEEec--CCCcceeeeEEeeCCEEEEEEcC---------------CeEEEEeCC
Q 036281          280 SLLYSDKFAHSFELWIMKG--GFWIKHLTFG--PFIETYQPLGFWRKDEFLLESSD---------------KRVILYDSR  340 (371)
Q Consensus       280 ~l~~~~~~~~~~~iW~L~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~~---------------~~l~~yd~~  340 (371)
                      +++.-......-++|+++-  ..|++...+.  |.+.......+ -+++|++....               ..++.||++
T Consensus       332 yviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~  410 (470)
T PLN02193        332 WVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA-VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTE  410 (470)
T ss_pred             EEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE-ECCEEEEECCccCCccccccCccceeccEEEEEcC
Confidence            8865211122245666665  7899876553  33322222232 35677765321               248999999


Q ss_pred             CCeEEEEEEe
Q 036281          341 YHEMRDLGIT  350 (371)
Q Consensus       341 ~~~~~~v~~~  350 (371)
                      |++|+.+...
T Consensus       411 t~~W~~~~~~  420 (470)
T PLN02193        411 TLQWERLDKF  420 (470)
T ss_pred             cCEEEEcccC
Confidence            9999988643

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.59  E-value=8.9e-09  Score=63.99  Aligned_cols=39  Identities=36%  Similarity=0.736  Sum_probs=36.9

Q ss_pred             CCHHHHHHHHhcCCccccceeeecccchhhhcCChHHHH
Q 036281           13 LSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIY   51 (371)
Q Consensus        13 LP~dll~~IL~rLP~ksl~r~r~VcK~W~~li~~p~F~~   51 (371)
                      ||+|++.+||.+|+++++.+++.|||+|+.++.++.|.+
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~   39 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF   39 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            799999999999999999999999999999999988754

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=98.48  E-value=3.2e-05  Score=71.55  Aligned_cols=150  Identities=12%  Similarity=0.114  Sum_probs=94.2

Q ss_pred             cceEEEEEcCCCce----eecCccccccceeccccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeC-CCCCCC
Q 036281          186 FSHVAVYNFSTNSW----RDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIK-GPSVPQ  258 (371)
Q Consensus       186 ~~~~~vy~~~~~~W----r~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~-~P~~~~  258 (371)
                      ...++.|+..++.|    +.++    ++|.......++.++|.+|-+.....  ....+-+||+.+++|+.++ +|....
T Consensus        87 ~~~v~~~d~~~~~w~~~~~~~~----~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r  162 (323)
T TIGR03548        87 FSSVYRITLDESKEELICETIG----NLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR  162 (323)
T ss_pred             ceeEEEEEEcCCceeeeeeEcC----CCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC
Confidence            45789999999988    4444    33433224466888999999876421  2357899999999999885 453221


Q ss_pred             CCcccccCCCcceEEEeCCeEEEEecCCCCCEEEEEEeeC--CceeEEEEec--CCC--cceeeeEEeeCCEEEEEEc--
Q 036281          259 TTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKG--GFWIKHLTFG--PFI--ETYQPLGFWRKDEFLLESS--  330 (371)
Q Consensus       259 ~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~--~~W~~~~~i~--~~~--~~~~~~~~~~~~~il~~~~--  330 (371)
                               ....++..+|+|+++.-.......++|..+-  ..|++.-.+.  +.+  .......+..+++|++...  
T Consensus       163 ---------~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~  233 (323)
T TIGR03548       163 ---------VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN  233 (323)
T ss_pred             ---------CcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence                     2334567899999976322222345566654  7898754431  111  0111112233567776532  


Q ss_pred             ------------------------------------CCeEEEEeCCCCeEEEEE
Q 036281          331 ------------------------------------DKRVILYDSRYHEMRDLG  348 (371)
Q Consensus       331 ------------------------------------~~~l~~yd~~~~~~~~v~  348 (371)
                                                          ...+..||+++++|..+.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~  287 (323)
T TIGR03548       234 KDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG  287 (323)
T ss_pred             HHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence                                                146999999999999885

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=98.47  E-value=4.5e-05  Score=71.32  Aligned_cols=202  Identities=14%  Similarity=0.130  Sum_probs=114.3

Q ss_pred             CCceEEEec--cccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCC-CCCcceEEEEEcCCCc
Q 036281          122 HTLINLWNV--SLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDS-FHDFSHVAVYNFSTNS  198 (371)
Q Consensus       122 ~~~~~V~NP--~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~-~~~~~~~~vy~~~~~~  198 (371)
                      +.. ++.++  .+++|..+|+.+.. ++.   .   ++...-    +-+|..+.........+ ......++.|+..+++
T Consensus        29 ~~~-~~~d~~~~~~~W~~l~~~p~~-~R~---~---~~~~~~----~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~   96 (346)
T TIGR03547        29 TSW-YKLDLKKPSKGWQKIADFPGG-PRN---Q---AVAAAI----DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS   96 (346)
T ss_pred             Cee-EEEECCCCCCCceECCCCCCC-Ccc---c---ceEEEE----CCEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence            345 77774  67889999877621 111   1   121111    12455554321110000 0123578999999999


Q ss_pred             eeecCccccccceeccccceE-EECceEEEEEecCCC------------------------------------CcEEEEE
Q 036281          199 WRDLKGFEMRFDYMVDRIYNV-YLNGYCYWVVCRPDY------------------------------------SKAILAF  241 (371)
Q Consensus       199 Wr~~~~~~~~~~~~~~~~~~v-~~~G~lywl~~~~~~------------------------------------~~~Il~f  241 (371)
                      |+.++.   +.+.......++ .++|.+|-+......                                    ...+.+|
T Consensus        97 W~~~~~---~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Y  173 (346)
T TIGR03547        97 WQKLDT---RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSY  173 (346)
T ss_pred             EecCCC---CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEE
Confidence            999862   122221112223 689999988653210                                    1469999


Q ss_pred             ECCCceEEEeC-CCCCCCCCcccccCCCcceEEEeCCeEEEEecC--CCCCEEEEEEee--C--CceeEEEEecCCCcc-
Q 036281          242 SMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSD--KFAHSFELWIMK--G--GFWIKHLTFGPFIET-  313 (371)
Q Consensus       242 D~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~--~~~~~~~iW~L~--~--~~W~~~~~i~~~~~~-  313 (371)
                      |+.+.+|+.+. +|....         ....++..+|+|.++.-.  ......++|..+  .  ..|+..-.+. .+.. 
T Consensus       174 Dp~t~~W~~~~~~p~~~r---------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~-~~r~~  243 (346)
T TIGR03547       174 DPSTNQWRNLGENPFLGT---------AGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLP-PPKSS  243 (346)
T ss_pred             ECCCCceeECccCCCCcC---------CCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCC-CCCCC
Confidence            99999999884 342111         234567789999997621  122344566543  2  5898766542 2111 


Q ss_pred             -----eeeeEEeeCCEEEEEEcC-----------------------CeEEEEeCCCCeEEEEE
Q 036281          314 -----YQPLGFWRKDEFLLESSD-----------------------KRVILYDSRYHEMRDLG  348 (371)
Q Consensus       314 -----~~~~~~~~~~~il~~~~~-----------------------~~l~~yd~~~~~~~~v~  348 (371)
                           .....+.-+++|++....                       ..+-+||+++++|+.+.
T Consensus       244 ~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~  306 (346)
T TIGR03547       244 SQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG  306 (346)
T ss_pred             ccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence                 111122347788776431                       14668999999998774

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=98.40  E-value=4.6e-05  Score=72.03  Aligned_cols=227  Identities=14%  Similarity=0.120  Sum_probs=123.6

Q ss_pred             cCCCCccceEEEeeecceEEEee---cCCceEEEecc--ccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEE
Q 036281           98 QDLEPIMRGIHIGPYDGIFCLLK---SHTLINLWNVS--LNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLI  172 (371)
Q Consensus        98 ~~~~~p~~~~~~~s~~GLl~~~~---~~~~~~V~NP~--T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~  172 (371)
                      ++++.|......+..++-|.+.-   .... ++.++.  +++|..+|+.+.. ++.   .   ++...  ..+  +|+.+
T Consensus        23 ~~lP~~~~~~~~~~~~~~iyv~gG~~~~~~-~~~d~~~~~~~W~~l~~~p~~-~r~---~---~~~v~--~~~--~IYV~   90 (376)
T PRK14131         23 PDLPVPFKNGTGAIDNNTVYVGLGSAGTSW-YKLDLNAPSKGWTKIAAFPGG-PRE---Q---AVAAF--IDG--KLYVF   90 (376)
T ss_pred             CCCCcCccCCeEEEECCEEEEEeCCCCCeE-EEEECCCCCCCeEECCcCCCC-Ccc---c---ceEEE--ECC--EEEEE
Confidence            34444433334455566554432   2344 777775  5789988876521 111   1   11111  112  34444


Q ss_pred             eeEecCCCCC-CCCcceEEEEEcCCCceeecCccccccceeccccceEE-ECceEEEEEecCC-----------------
Q 036281          173 LTLWNDQRDS-FHDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVY-LNGYCYWVVCRPD-----------------  233 (371)
Q Consensus       173 ~~~~~~~~~~-~~~~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~-~~G~lywl~~~~~-----------------  233 (371)
                      .........+ ......++.|+..+++|+.++..   .|.......++. .+|.+|-+.....                 
T Consensus        91 GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~---~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~  167 (376)
T PRK14131         91 GGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR---SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDK  167 (376)
T ss_pred             cCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC---CCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccch
Confidence            3211100000 01135799999999999998631   122211223344 7999999975421                 


Q ss_pred             -------------------CCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCCcceEEEeCCeEEEEec--CCCCCEE
Q 036281          234 -------------------YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYS--DKFAHSF  291 (371)
Q Consensus       234 -------------------~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~--~~~~~~~  291 (371)
                                         ....+..||+.+.+|+.+. +|....         ....++..+++|+++.-  .......
T Consensus       168 ~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~---------~~~a~v~~~~~iYv~GG~~~~~~~~~  238 (376)
T PRK14131        168 TPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGT---------AGSAVVIKGNKLWLINGEIKPGLRTD  238 (376)
T ss_pred             hhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCC---------CcceEEEECCEEEEEeeeECCCcCCh
Confidence                               0246999999999999874 343211         23456778999999762  1223456


Q ss_pred             EEEEee--C--CceeEEEEecCCC------cceeeeEEeeCCEEEEEEcC-----------------------CeEEEEe
Q 036281          292 ELWIMK--G--GFWIKHLTFGPFI------ETYQPLGFWRKDEFLLESSD-----------------------KRVILYD  338 (371)
Q Consensus       292 ~iW~L~--~--~~W~~~~~i~~~~------~~~~~~~~~~~~~il~~~~~-----------------------~~l~~yd  338 (371)
                      ++|..+  .  ..|+++-.+....      ......++.-+++|++....                       ..+-.||
T Consensus       239 ~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd  318 (376)
T PRK14131        239 AVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYA  318 (376)
T ss_pred             hheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEE
Confidence            677554  1  6899877653211      01111123346778776421                       1234799


Q ss_pred             CCCCeEEEEE
Q 036281          339 SRYHEMRDLG  348 (371)
Q Consensus       339 ~~~~~~~~v~  348 (371)
                      +++++|+.+.
T Consensus       319 ~~~~~W~~~~  328 (376)
T PRK14131        319 LVNGKWQKVG  328 (376)
T ss_pred             ecCCcccccC
Confidence            9999998774

>PHA03098 kelch-like protein; Provisional

Probab=98.25  E-value=5.8e-05  Score=74.87  Aligned_cols=190  Identities=11%  Similarity=0.062  Sum_probs=113.1

Q ss_pred             EEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeecCcc
Q 036281          126 NLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGF  205 (371)
Q Consensus       126 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~~~~  205 (371)
                      .-.|+.+++|..++..+..   +   .   ++...    -+-+++.++.....    ......+..|+..+++|..++..
T Consensus       267 ~~~~~~~~~~~~~~~~~~~---~---~---~~~~~----~~~~lyv~GG~~~~----~~~~~~v~~yd~~~~~W~~~~~~  329 (534)
T PHA03098        267 ITNYSPLSEINTIIDIHYV---Y---C---FGSVV----LNNVIYFIGGMNKN----NLSVNSVVSYDTKTKSWNKVPEL  329 (534)
T ss_pred             eecchhhhhcccccCcccc---c---c---ceEEE----ECCEEEEECCCcCC----CCeeccEEEEeCCCCeeeECCCC
Confidence            4578888998888755421   0   1   11110    11234444321111    11234689999999999988643


Q ss_pred             ccccceeccccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCCcceEEEeCCeEEEE
Q 036281          206 EMRFDYMVDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTYDDCLSLL  282 (371)
Q Consensus       206 ~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~  282 (371)
                          +........+.++|.+|-+.....  ....+-.||+.+.+|+.+. +|.+.          .....+..+|++.++
T Consensus       330 ----~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r----------~~~~~~~~~~~iYv~  395 (534)
T PHA03098        330 ----IYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR----------YNPCVVNVNNLIYVI  395 (534)
T ss_pred             ----CcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC----------ccceEEEECCEEEEE
Confidence                222223467889999999886532  2346889999999999874 34332          234456789999997


Q ss_pred             ecC--CC--CCEEEEEEeeCCceeEEEEecCCCcceeeeEEeeCCEEEEEEc---------CCeEEEEeCCCCeEEEEE
Q 036281          283 YSD--KF--AHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESS---------DKRVILYDSRYHEMRDLG  348 (371)
Q Consensus       283 ~~~--~~--~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~---------~~~l~~yd~~~~~~~~v~  348 (371)
                      .-.  ..  ...++.+-.+...|++...+ |.+.... -++..+++|++...         ...+..||+++++|+.+.
T Consensus       396 GG~~~~~~~~~~v~~yd~~t~~W~~~~~~-p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~  472 (534)
T PHA03098        396 GGISKNDELLKTVECFSLNTNKWSKGSPL-PISHYGG-CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELS  472 (534)
T ss_pred             CCcCCCCcccceEEEEeCCCCeeeecCCC-CccccCc-eEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCC
Confidence            631  11  23444444444789876443 2221122 22334677777642         124899999999999884

>PHA02790 Kelch-like protein; Provisional

Probab=98.24  E-value=9e-05  Score=72.35  Aligned_cols=145  Identities=9%  Similarity=0.075  Sum_probs=97.4

Q ss_pred             cceEEEEEcCCCceeecCccccccceeccccceEEECceEEEEEecCCCCcEEEEEECCCceEEEeC-CCCCCCCCcccc
Q 036281          186 FSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQ  264 (371)
Q Consensus       186 ~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~  264 (371)
                      ...++.|+..++.|..++..    +........+.++|.+|-+.... ....+-.||+.+++|..++ +|...       
T Consensus       286 ~~~v~~Ydp~~~~W~~~~~m----~~~r~~~~~v~~~~~iYviGG~~-~~~sve~ydp~~n~W~~~~~l~~~r-------  353 (480)
T PHA02790        286 HNNAIAVNYISNNWIPIPPM----NSPRLYASGVPANNKLYVVGGLP-NPTSVERWFHGDAAWVNMPSLLKPR-------  353 (480)
T ss_pred             CCeEEEEECCCCEEEECCCC----CchhhcceEEEECCEEEEECCcC-CCCceEEEECCCCeEEECCCCCCCC-------
Confidence            45789999999999999744    22222345688999999998753 2346889999999998874 23222       


Q ss_pred             cCCCcceEEEeCCeEEEEecC-CCCCEEEEEEeeCCceeEEEEecCCCcceeeeEEeeCCEEEEEEcCCeEEEEeCCCCe
Q 036281          265 SVKTPWMLGTYDDCLSLLYSD-KFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHE  343 (371)
Q Consensus       265 ~~~~~~~L~~~~g~L~l~~~~-~~~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~~  343 (371)
                         .....+.++|+|+++.-. .....++.+-.+...|+..-.+. .+ ......+.-+|+|++..+  ..-.||+++++
T Consensus       354 ---~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~-~~-r~~~~~~~~~~~IYv~GG--~~e~ydp~~~~  426 (480)
T PHA02790        354 ---CNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTY-YP-HYKSCALVFGRRLFLVGR--NAEFYCESSNT  426 (480)
T ss_pred             ---cccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCC-Cc-cccceEEEECCEEEEECC--ceEEecCCCCc
Confidence               245677899999997631 22355666655558898754332 12 112222334788888753  46789999999


Q ss_pred             EEEEEE
Q 036281          344 MRDLGI  349 (371)
Q Consensus       344 ~~~v~~  349 (371)
                      |+.+.-
T Consensus       427 W~~~~~  432 (480)
T PHA02790        427 WTLIDD  432 (480)
T ss_pred             EeEcCC
Confidence            998743

>PLN02153 epithiospecifier protein

Probab=98.18  E-value=0.00035  Score=65.15  Aligned_cols=158  Identities=9%  Similarity=0.086  Sum_probs=93.4

Q ss_pred             ceEEEEEcCCCceeecCccccccceec-cccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeCCC-CCCCCCcc
Q 036281          187 SHVAVYNFSTNSWRDLKGFEMRFDYMV-DRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIKGP-SVPQTTTY  262 (371)
Q Consensus       187 ~~~~vy~~~~~~Wr~~~~~~~~~~~~~-~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~~P-~~~~~~~~  262 (371)
                      ..+++|+..++.|+..+... ..|... .....+.++|.+|-+.....  ....+.+||+.+.+|+.+... .....   
T Consensus        50 ~~~~~yd~~~~~W~~~~~~~-~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p---  125 (341)
T PLN02153         50 KDLYVFDFNTHTWSIAPANG-DVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGP---  125 (341)
T ss_pred             CcEEEEECCCCEEEEcCccC-CCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCC---
Confidence            47899999999999876331 122211 12356888999999875432  124688999999999987521 11000   


Q ss_pred             cccCCCcceEEEeCCeEEEEecCCCC-------CEEEEEEeeC--CceeEEEEec--CCCcceeeeEEeeCCEEEEEEc-
Q 036281          263 YQSVKTPWMLGTYDDCLSLLYSDKFA-------HSFELWIMKG--GFWIKHLTFG--PFIETYQPLGFWRKDEFLLESS-  330 (371)
Q Consensus       263 ~~~~~~~~~L~~~~g~L~l~~~~~~~-------~~~~iW~L~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~-  330 (371)
                        ........+..+++|+++.-....       ..-++|+.+-  ..|...-...  +.........+. +++|++... 
T Consensus       126 --~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~-~~~iyv~GG~  202 (341)
T PLN02153        126 --EARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVV-QGKIWVVYGF  202 (341)
T ss_pred             --CCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEE-CCeEEEEecc
Confidence              011234466789999886521110       1124555554  7898754332  111112223333 567766421 


Q ss_pred             -------------CCeEEEEeCCCCeEEEEEEec
Q 036281          331 -------------DKRVILYDSRYHEMRDLGITG  351 (371)
Q Consensus       331 -------------~~~l~~yd~~~~~~~~v~~~~  351 (371)
                                   ...+..||+++++|+++...|
T Consensus       203 ~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g  236 (341)
T PLN02153        203 ATSILPGGKSDYESNAVQFFDPASGKWTEVETTG  236 (341)
T ss_pred             ccccccCCccceecCceEEEEcCCCcEEeccccC
Confidence                         246899999999999986543

>PLN02193 nitrile-specifier protein

Probab=98.10  E-value=0.00036  Score=67.96  Aligned_cols=156  Identities=12%  Similarity=0.087  Sum_probs=93.0

Q ss_pred             ceEEEEEcCCCceeecCcccccccee-ccccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeCCCCCCCCCccc
Q 036281          187 SHVAVYNFSTNSWRDLKGFEMRFDYM-VDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIKGPSVPQTTTYY  263 (371)
Q Consensus       187 ~~~~vy~~~~~~Wr~~~~~~~~~~~~-~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~  263 (371)
                      ..+++|+..+++|..++... ..|.. ......+.+++.+|-+.....  ....+-+||+.+.+|+.+..... ..    
T Consensus       193 ~~v~~yD~~~~~W~~~~~~g-~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~-~P----  266 (470)
T PLN02193        193 KHLYVFDLETRTWSISPATG-DVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEE-GP----  266 (470)
T ss_pred             CcEEEEECCCCEEEeCCCCC-CCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCC-CC----
Confidence            46899999999999875321 12221 113356788999998875431  23468899999999998743210 00    


Q ss_pred             ccCCCcceEEEeCCeEEEEecCC-CCCEEEEEEee--CCceeEEEEec--CCCcceeeeEEeeCCEEEEEEc-----CCe
Q 036281          264 QSVKTPWMLGTYDDCLSLLYSDK-FAHSFELWIMK--GGFWIKHLTFG--PFIETYQPLGFWRKDEFLLESS-----DKR  333 (371)
Q Consensus       264 ~~~~~~~~L~~~~g~L~l~~~~~-~~~~~~iW~L~--~~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~~-----~~~  333 (371)
                       .......++..+++|+++.-.. ....-++|..+  ...|+..-...  +.........+. +++|++...     ...
T Consensus       267 -~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~~~~d  344 (470)
T PLN02193        267 -TPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGCEVDD  344 (470)
T ss_pred             -CCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCCccCc
Confidence             0112344566899999875211 11122445544  37898654321  111112223333 567766532     256


Q ss_pred             EEEEeCCCCeEEEEEEe
Q 036281          334 VILYDSRYHEMRDLGIT  350 (371)
Q Consensus       334 l~~yd~~~~~~~~v~~~  350 (371)
                      +..||+++++|+.+...
T Consensus       345 v~~yD~~t~~W~~~~~~  361 (470)
T PLN02193        345 VHYYDPVQDKWTQVETF  361 (470)
T ss_pred             eEEEECCCCEEEEeccC
Confidence            99999999999998654

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=97.94  E-value=0.0021  Score=59.39  Aligned_cols=136  Identities=13%  Similarity=0.023  Sum_probs=76.8

Q ss_pred             CceEEEecccccc----ccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCc
Q 036281          123 TLINLWNVSLNEY----RGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNS  198 (371)
Q Consensus       123 ~~~~V~NP~T~~~----~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~  198 (371)
                      .+ +.+|+.+++|    ..+|+.+....     ..  .+..++     -+|+.+.....     ......+++|+..++.
T Consensus        89 ~v-~~~d~~~~~w~~~~~~~~~lp~~~~-----~~--~~~~~~-----~~iYv~GG~~~-----~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        89 SV-YRITLDESKEELICETIGNLPFTFE-----NG--SACYKD-----GTLYVGGGNRN-----GKPSNKSYLFNLETQE  150 (323)
T ss_pred             eE-EEEEEcCCceeeeeeEcCCCCcCcc-----Cc--eEEEEC-----CEEEEEeCcCC-----CccCceEEEEcCCCCC
Confidence            45 8899999887    66776654211     11  111111     24555543211     1124578999999999


Q ss_pred             eeecCccccccceeccccceEEECceEEEEEecCC-CCcEEEEEECCCceEEEeCCCCC-CCCCcccccCCCcceEEEeC
Q 036281          199 WRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD-YSKAILAFSMSNEVFQEIKGPSV-PQTTTYYQSVKTPWMLGTYD  276 (371)
Q Consensus       199 Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~-~~~~Il~fD~~~e~~~~i~~P~~-~~~~~~~~~~~~~~~L~~~~  276 (371)
                      |..++..+. .+.  .....+.++|.+|-+..... ....+.+||+++++|+.+..... ...   . .......++..+
T Consensus       151 W~~~~~~p~-~~r--~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p---~-~~~~~~~~~~~~  223 (323)
T TIGR03548       151 WFELPDFPG-EPR--VQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEP---I-SLLGAASIKINE  223 (323)
T ss_pred             eeECCCCCC-CCC--CcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCc---e-eccceeEEEECC
Confidence            999874311 111  12344688999999875431 12346899999999998753211 111   0 000122344457


Q ss_pred             CeEEEEe
Q 036281          277 DCLSLLY  283 (371)
Q Consensus       277 g~L~l~~  283 (371)
                      |+|.++.
T Consensus       224 ~~iyv~G  230 (323)
T TIGR03548       224 SLLLCIG  230 (323)
T ss_pred             CEEEEEC
Confidence            8888865

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=97.92  E-value=0.00029  Score=64.44  Aligned_cols=212  Identities=11%  Similarity=0.132  Sum_probs=120.2

Q ss_pred             CCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCC-CCCCCcceEEEEEcCCCcee
Q 036281          122 HTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQR-DSFHDFSHVAVYNFSTNSWR  200 (371)
Q Consensus       122 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~-~~~~~~~~~~vy~~~~~~Wr  200 (371)
                      +.+ |++|--+.+|+.+-.+....++      +.......++.  +-.+ ++.....+. +.......+.+|+..++.|.
T Consensus        98 ndL-y~Yn~k~~eWkk~~spn~P~pR------sshq~va~~s~--~l~~-fGGEfaSPnq~qF~HYkD~W~fd~~trkwe  167 (521)
T KOG1230|consen   98 NDL-YSYNTKKNEWKKVVSPNAPPPR------SSHQAVAVPSN--ILWL-FGGEFASPNQEQFHHYKDLWLFDLKTRKWE  167 (521)
T ss_pred             eee-eEEeccccceeEeccCCCcCCC------ccceeEEeccC--eEEE-eccccCCcchhhhhhhhheeeeeeccchhe
Confidence            345 8999999999976433322221      11222223332  2111 111111110 11223456899999999999


Q ss_pred             ecCccccccceeccccceEEECce------EEEEEecCCCCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEE
Q 036281          201 DLKGFEMRFDYMVDRIYNVYLNGY------CYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGT  274 (371)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~v~~~G~------lywl~~~~~~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~  274 (371)
                      .+.....+-|..  ..+.|...-.      +|=.........-|-+||+++=+|+.+..+.. ..     .++..+++.+
T Consensus       168 ql~~~g~PS~RS--GHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga-~P-----tpRSGcq~~v  239 (521)
T KOG1230|consen  168 QLEFGGGPSPRS--GHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGA-GP-----TPRSGCQFSV  239 (521)
T ss_pred             eeccCCCCCCCc--cceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCC-CC-----CCCCcceEEe
Confidence            986432222221  1223332222      22211111123458999999999999976432 22     2234566666


Q ss_pred             e-CCeEEEEe----------cCCCCCEEEEEEeeC-------CceeEEEEec--CCCcceeeeEEeeCCE-EEEEE--c-
Q 036281          275 Y-DDCLSLLY----------SDKFAHSFELWIMKG-------GFWIKHLTFG--PFIETYQPLGFWRKDE-FLLES--S-  330 (371)
Q Consensus       275 ~-~g~L~l~~----------~~~~~~~~~iW~L~~-------~~W~~~~~i~--~~~~~~~~~~~~~~~~-il~~~--~-  330 (371)
                      . +|.+.++.          .+.....-++|.|+-       -.|.++-.+.  |.+.....++++++++ ++|-.  . 
T Consensus       240 tpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~  319 (521)
T KOG1230|consen  240 TPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDL  319 (521)
T ss_pred             cCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecc
Confidence            5 88888854          134556789999986       4688876655  4554555677777655 44421  0 


Q ss_pred             -----------CCeEEEEeCCCCeEEEEEEec
Q 036281          331 -----------DKRVILYDSRYHEMRDLGITG  351 (371)
Q Consensus       331 -----------~~~l~~yd~~~~~~~~v~~~~  351 (371)
                                 .+.|+.||+..++|.+.++++
T Consensus       320 eeeeEsl~g~F~NDLy~fdlt~nrW~~~qlq~  351 (521)
T KOG1230|consen  320 EEEEESLSGEFFNDLYFFDLTRNRWSEGQLQG  351 (521)
T ss_pred             cccchhhhhhhhhhhhheecccchhhHhhhcc
Confidence                       246999999999998887765

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=97.82  E-value=0.0026  Score=60.14  Aligned_cols=150  Identities=18%  Similarity=0.183  Sum_probs=88.6

Q ss_pred             ceEEEEEcCCCceeecCccccccce-eccccceEEECceEEEEEecCC-----CCcEEEEEECCCceEEEeC-CCCCCCC
Q 036281          187 SHVAVYNFSTNSWRDLKGFEMRFDY-MVDRIYNVYLNGYCYWVVCRPD-----YSKAILAFSMSNEVFQEIK-GPSVPQT  259 (371)
Q Consensus       187 ~~~~vy~~~~~~Wr~~~~~~~~~~~-~~~~~~~v~~~G~lywl~~~~~-----~~~~Il~fD~~~e~~~~i~-~P~~~~~  259 (371)
                      ..+++|+..++.|+.++..    |. .......+.++|.+|.+.....     .......||.++.+|..+. +|.....
T Consensus       189 ~~v~~YD~~t~~W~~~~~~----p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~  264 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGES----PFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGG  264 (376)
T ss_pred             ceEEEEECCCCeeeECCcC----CCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcC
Confidence            5689999999999998643    32 1113355778999999885321     2234556788899998874 4543221


Q ss_pred             CcccccCCC--cceEEEeCCeEEEEecCCCC--------------------CEEEEEEeeCCceeEEEEecCCCcceeee
Q 036281          260 TTYYQSVKT--PWMLGTYDDCLSLLYSDKFA--------------------HSFELWIMKGGFWIKHLTFGPFIETYQPL  317 (371)
Q Consensus       260 ~~~~~~~~~--~~~L~~~~g~L~l~~~~~~~--------------------~~~~iW~L~~~~W~~~~~i~~~~~~~~~~  317 (371)
                      .    ....  ....+..+|+|.++.-....                    ...+++-.+...|++.-.+ |.+.... .
T Consensus       265 ~----~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~l-p~~r~~~-~  338 (376)
T PRK14131        265 S----SQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGEL-PQGLAYG-V  338 (376)
T ss_pred             C----cCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcC-CCCccce-E
Confidence            0    0001  11245689999886521110                    1345566655789876543 3332222 2


Q ss_pred             EEeeCCEEEEEEcC-------CeEEEEeCCCCeEEE
Q 036281          318 GFWRKDEFLLESSD-------KRVILYDSRYHEMRD  346 (371)
Q Consensus       318 ~~~~~~~il~~~~~-------~~l~~yd~~~~~~~~  346 (371)
                      ++.-+++|++....       ..+..|+++++++..
T Consensus       339 av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~  374 (376)
T PRK14131        339 SVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV  374 (376)
T ss_pred             EEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence            33346788877431       368888888877654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=5.4e-05  Score=66.68  Aligned_cols=42  Identities=24%  Similarity=0.454  Sum_probs=38.1

Q ss_pred             cCCCCCHHHHHHHHhcCCccccceeeecccchhhhcCChHHH
Q 036281            9 TLGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFI   50 (371)
Q Consensus         9 ~~~~LP~dll~~IL~rLP~ksl~r~r~VcK~W~~li~~p~F~   50 (371)
                      .+..|||||+..||+.||.|+|+++..|||+|+++-++.+-.
T Consensus        97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW  138 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLW  138 (419)
T ss_pred             CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccce
Confidence            368999999999999999999999999999999998876543

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=97.23  E-value=0.021  Score=53.27  Aligned_cols=85  Identities=7%  Similarity=0.053  Sum_probs=55.4

Q ss_pred             ceEEEEEc--CCCceeecCccccccce-eccccceEEECceEEEEEecCC--------CCcEEEEEECCCceEEEeCCCC
Q 036281          187 SHVAVYNF--STNSWRDLKGFEMRFDY-MVDRIYNVYLNGYCYWVVCRPD--------YSKAILAFSMSNEVFQEIKGPS  255 (371)
Q Consensus       187 ~~~~vy~~--~~~~Wr~~~~~~~~~~~-~~~~~~~v~~~G~lywl~~~~~--------~~~~Il~fD~~~e~~~~i~~P~  255 (371)
                      ..+.+|++  .++.|+.++..    |. .......+.++|.+|-+.....        ....+-+||+.+.+|+.+..|.
T Consensus        29 ~~~~~~d~~~~~~~W~~l~~~----p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~  104 (346)
T TIGR03547        29 TSWYKLDLKKPSKGWQKIADF----PGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRS  104 (346)
T ss_pred             CeeEEEECCCCCCCceECCCC----CCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCC
Confidence            45778886  45889998743    31 1113467899999999986431        0245889999999999986332


Q ss_pred             CCCCCcccccCCCcc-eEEEeCCeEEEEe
Q 036281          256 VPQTTTYYQSVKTPW-MLGTYDDCLSLLY  283 (371)
Q Consensus       256 ~~~~~~~~~~~~~~~-~L~~~~g~L~l~~  283 (371)
                      +...        ... .+...+|+|+++.
T Consensus       105 p~~~--------~~~~~~~~~~g~IYviG  125 (346)
T TIGR03547       105 PVGL--------LGASGFSLHNGQAYFTG  125 (346)
T ss_pred             CCcc--------cceeEEEEeCCEEEEEc
Confidence            2211        112 2336899999975

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=96.78  E-value=0.18  Score=49.28  Aligned_cols=157  Identities=10%  Similarity=0.025  Sum_probs=101.1

Q ss_pred             eEEEEEcCCCceeecCccccccceeccccceEEECceEEEEEecCC---CCcEEEEEECCCceEEEeCCCCCCCCCcccc
Q 036281          188 HVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD---YSKAILAFSMSNEVFQEIKGPSVPQTTTYYQ  264 (371)
Q Consensus       188 ~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~---~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~  264 (371)
                      .+.+++..+..|....... ..|........+.++..+|.+.....   ....|-+||+.+.+|..+..-.. ..     
T Consensus        89 dl~~~d~~~~~w~~~~~~g-~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~-~P-----  161 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATG-DEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGD-PP-----  161 (482)
T ss_pred             eeEEeecCCcccccccccC-CCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCC-CC-----
Confidence            5888888888998775432 22322224566788888888876541   23579999999999998754221 11     


Q ss_pred             cCCCcceEEEeCCeEEEEec-C-CCCCEEEEEEeeC--CceeEEEEecCC--CcceeeeEEeeCCEEEEEEcC------C
Q 036281          265 SVKTPWMLGTYDDCLSLLYS-D-KFAHSFELWIMKG--GFWIKHLTFGPF--IETYQPLGFWRKDEFLLESSD------K  332 (371)
Q Consensus       265 ~~~~~~~L~~~~g~L~l~~~-~-~~~~~~~iW~L~~--~~W~~~~~i~~~--~~~~~~~~~~~~~~il~~~~~------~  332 (371)
                      .++....++..+.+|.++.- . .....-++|+++-  ..|.+....++.  +...+...+.++.-+++....      .
T Consensus       162 ~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~  241 (482)
T KOG0379|consen  162 PPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLN  241 (482)
T ss_pred             CCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceec
Confidence            11234456667788888652 1 2225778899886  779999887743  334445555544333333222      3


Q ss_pred             eEEEEeCCCCeEEEEEEec
Q 036281          333 RVILYDSRYHEMRDLGITG  351 (371)
Q Consensus       333 ~l~~yd~~~~~~~~v~~~~  351 (371)
                      -++.+|+.+.+|+.+...|
T Consensus       242 D~~~ldl~~~~W~~~~~~g  260 (482)
T KOG0379|consen  242 DVHILDLSTWEWKLLPTGG  260 (482)
T ss_pred             ceEeeecccceeeeccccC
Confidence            4899999998888665554

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=96.44  E-value=0.18  Score=44.10  Aligned_cols=134  Identities=14%  Similarity=0.192  Sum_probs=81.7

Q ss_pred             cceEEEEEcCCCceeecCccccccceecc-ccceEEECceEEEEEecCC-----------CCcEEEEEECCCceEEEeC-
Q 036281          186 FSHVAVYNFSTNSWRDLKGFEMRFDYMVD-RIYNVYLNGYCYWVVCRPD-----------YSKAILAFSMSNEVFQEIK-  252 (371)
Q Consensus       186 ~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~-~~~~v~~~G~lywl~~~~~-----------~~~~Il~fD~~~e~~~~i~-  252 (371)
                      ...+++++..|-.||.+...  ..|..+. ...++.++|.+|-+..++.           ....|++||+.++.|..-+ 
T Consensus       156 S~d~h~ld~~TmtWr~~~Tk--g~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~  233 (392)
T KOG4693|consen  156 SQDTHVLDFATMTWREMHTK--GDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPE  233 (392)
T ss_pred             hccceeEeccceeeeehhcc--CCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCC
Confidence            45677888889999998754  2222222 4577888899999886542           2467999999999998652 


Q ss_pred             CCCCCCCCcccccCCCcceEEEeCCeEEEEecC---CCCCEEEEEEeeC--CceeEEEEecCCCc-ceeeeEEeeCCEEE
Q 036281          253 GPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSD---KFAHSFELWIMKG--GFWIKHLTFGPFIE-TYQPLGFWRKDEFL  326 (371)
Q Consensus       253 ~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~---~~~~~~~iW~L~~--~~W~~~~~i~~~~~-~~~~~~~~~~~~il  326 (371)
                      .|.....       ++.-...+++|+++++.-.   .+..-=++|..+-  ..|++...-+.-+. -.+-.++.-+++++
T Consensus       234 ~~~~P~G-------RRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~  306 (392)
T KOG4693|consen  234 NTMKPGG-------RRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVSGGKVY  306 (392)
T ss_pred             CCcCCCc-------ccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEECCEEE
Confidence            1111111       1344567899999996521   1223347888887  77877543332121 12223333456655


Q ss_pred             EE
Q 036281          327 LE  328 (371)
Q Consensus       327 ~~  328 (371)
                      +-
T Consensus       307 LF  308 (392)
T KOG4693|consen  307 LF  308 (392)
T ss_pred             Ee
Confidence            53

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=96.24  E-value=0.036  Score=48.26  Aligned_cols=157  Identities=10%  Similarity=0.082  Sum_probs=91.6

Q ss_pred             cceEEEEEcCCCceeecCccccccceeccccceEEECceEEEEEecCC----CCcEEEEEECCCceEEEeCC---CCCCC
Q 036281          186 FSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD----YSKAILAFSMSNEVFQEIKG---PSVPQ  258 (371)
Q Consensus       186 ~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~----~~~~Il~fD~~~e~~~~i~~---P~~~~  258 (371)
                      --.+.-|+.+++.|+..+ +..-+|......++++.+..+|-+.....    -..-+-+||+.+.+|+.+..   |+...
T Consensus       104 CN~Ly~fDp~t~~W~~p~-v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwR  182 (392)
T KOG4693|consen  104 CNLLYEFDPETNVWKKPE-VEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWR  182 (392)
T ss_pred             cceeeeeccccccccccc-eeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhh
Confidence            346788999999999875 21123333334567778888887764321    12358899999999999864   44322


Q ss_pred             CCcccccCCCcceEEEeCCeEEEEecCC----------CCCEEEEEEeeC--CceeEEEEecCCCcceee-eEEeeCCEE
Q 036281          259 TTTYYQSVKTPWMLGTYDDCLSLLYSDK----------FAHSFELWIMKG--GFWIKHLTFGPFIETYQP-LGFWRKDEF  325 (371)
Q Consensus       259 ~~~~~~~~~~~~~L~~~~g~L~l~~~~~----------~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~-~~~~~~~~i  325 (371)
                      +    |     -.-.+++|..+++.-..          +.-.=+|-.|+-  +.|.+...-...+.-.+. -.+.-+|++
T Consensus       183 D----F-----H~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~  253 (392)
T KOG4693|consen  183 D----F-----HTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKM  253 (392)
T ss_pred             h----h-----hhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceE
Confidence            2    1     12233456666544111          111123444443  778776332222211111 122237777


Q ss_pred             EEEEc--------CCeEEEEeCCCCeEEEEEEecc
Q 036281          326 LLESS--------DKRVILYDSRYHEMRDLGITGL  352 (371)
Q Consensus       326 l~~~~--------~~~l~~yd~~~~~~~~v~~~~~  352 (371)
                      ++-..        .+.|+.||++|+.|..|..+|.
T Consensus       254 Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk  288 (392)
T KOG4693|consen  254 YMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGK  288 (392)
T ss_pred             EEecccchhhhhhhcceeecccccchheeeeccCC
Confidence            66532        3569999999999999999875

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=96.24  E-value=0.33  Score=47.49  Aligned_cols=205  Identities=13%  Similarity=0.042  Sum_probs=117.8

Q ss_pred             ceEEEeccccccccCCCCCCCC-CCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeec
Q 036281          124 LINLWNVSLNEYRGLPECRPRL-PCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDL  202 (371)
Q Consensus       124 ~~~V~NP~T~~~~~LP~~~~~~-~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~  202 (371)
                      + +|+|--++.|.......... +++   ......++       =+++.++....    .......+.+|+..|+.|+..
T Consensus        90 l-~~~d~~~~~w~~~~~~g~~p~~r~---g~~~~~~~-------~~l~lfGG~~~----~~~~~~~l~~~d~~t~~W~~l  154 (482)
T KOG0379|consen   90 L-YVLDLESQLWTKPAATGDEPSPRY---GHSLSAVG-------DKLYLFGGTDK----KYRNLNELHSLDLSTRTWSLL  154 (482)
T ss_pred             e-EEeecCCcccccccccCCCCCccc---ceeEEEEC-------CeEEEEccccC----CCCChhheEeccCCCCcEEEe
Confidence            6 99999998888765443321 111   11111111       23333322111    011256889999999999998


Q ss_pred             CccccccceeccccceEEECceEEEEEecCC---CCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEEeCCeE
Q 036281          203 KGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD---YSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCL  279 (371)
Q Consensus       203 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~---~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L  279 (371)
                      ..... .|........+.++-++|.+.....   ....+-+||+.+.+|.++......-.      ++....++..++++
T Consensus       155 ~~~~~-~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~------pR~gH~~~~~~~~~  227 (482)
T KOG0379|consen  155 SPTGD-PPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS------PRYGHAMVVVGNKL  227 (482)
T ss_pred             cCcCC-CCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCC------CCCCceEEEECCeE
Confidence            75422 1221113455566666666654332   24679999999999999876432211      11344577788999


Q ss_pred             EEEec-C-CCCCEEEEEEeeC--CceeEEEEec--CCCcceeeeEEeeCCEEEEEE--------cCCeEEEEeCCCCeEE
Q 036281          280 SLLYS-D-KFAHSFELWIMKG--GFWIKHLTFG--PFIETYQPLGFWRKDEFLLES--------SDKRVILYDSRYHEMR  345 (371)
Q Consensus       280 ~l~~~-~-~~~~~~~iW~L~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~~--------~~~~l~~yd~~~~~~~  345 (371)
                      +++.- . .+...=++|.|+=  ..|.+.-...  |.+.......+. +..+++..        .-..++.||.+++.|.
T Consensus       228 ~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~-~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~  306 (482)
T KOG0379|consen  228 LVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVS-GDHLLLFGGGTDPKQEPLGDLYGLDLETLVWS  306 (482)
T ss_pred             EEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEE-CCEEEEEcCCccccccccccccccccccccee
Confidence            88652 1 2334457888887  6677544332  334445554443 33444432        1235889999999998


Q ss_pred             EEEEec
Q 036281          346 DLGITG  351 (371)
Q Consensus       346 ~v~~~~  351 (371)
                      ++...+
T Consensus       307 ~~~~~~  312 (482)
T KOG0379|consen  307 KVESVG  312 (482)
T ss_pred             eeeccc
Confidence            886655

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.79  E-value=0.0029  Score=56.18  Aligned_cols=45  Identities=18%  Similarity=0.407  Sum_probs=39.3

Q ss_pred             CCCCCHHHHHHHHhcCC-----ccccceeeecccchhhhcCChHHHHHHh
Q 036281           10 LGDLSDDMMIETLSRLP-----VKSLMRFKCVCISWCDLVKDPNFIYKHL   54 (371)
Q Consensus        10 ~~~LP~dll~~IL~rLP-----~ksl~r~r~VcK~W~~li~~p~F~~~~~   54 (371)
                      +..||||++.+||.+.=     ..+|.++.+|||.|+-...+|+|.+..+
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC  156 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLAC  156 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHH
Confidence            46899999999998754     5899999999999999999999887643

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=95.39  E-value=0.67  Score=43.15  Aligned_cols=155  Identities=11%  Similarity=0.101  Sum_probs=91.5

Q ss_pred             ceEEEEEcCCCceeecCccccccceeccccceEEEC-ceEEEEEecCC--------CCcEEEEEECCCceEEEeCCCCCC
Q 036281          187 SHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLN-GYCYWVVCRPD--------YSKAILAFSMSNEVFQEIKGPSVP  257 (371)
Q Consensus       187 ~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~-G~lywl~~~~~--------~~~~Il~fD~~~e~~~~i~~P~~~  257 (371)
                      -.+..|+.+++.|+.+....++.|..  ...+|.+- |.+|.+.....        ...-+-.||+.+.+|..+.++...
T Consensus        98 ndLy~Yn~k~~eWkk~~spn~P~pRs--shq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~P  175 (521)
T KOG1230|consen   98 NDLYSYNTKKNEWKKVVSPNAPPPRS--SHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGP  175 (521)
T ss_pred             eeeeEEeccccceeEeccCCCcCCCc--cceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCC
Confidence            35688999999999987653344443  33445554 65554443221        234588999999999999987654


Q ss_pred             CCCcccccCCCcceEEEeCCeEEEEec--CCCCC---EEEEEEeeC--CceeEEEEec--CCCcceeeeEEeeCCEEEEE
Q 036281          258 QTTTYYQSVKTPWMLGTYDDCLSLLYS--DKFAH---SFELWIMKG--GFWIKHLTFG--PFIETYQPLGFWRKDEFLLE  328 (371)
Q Consensus       258 ~~~~~~~~~~~~~~L~~~~g~L~l~~~--~~~~~---~~~iW~L~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il~~  328 (371)
                      ..       +...+++..+.+|.++.-  +....   -=+||+.+=  ..|++.-.=.  |.+.-..-+.+.+.|.|++.
T Consensus       176 S~-------RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vy  248 (521)
T KOG1230|consen  176 SP-------RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVY  248 (521)
T ss_pred             CC-------CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEE
Confidence            33       245678888999998541  11111   124555553  7899876522  33211222344556666664


Q ss_pred             Ec----------C-----CeEEEEeCCCC---eEEEEEEe
Q 036281          329 SS----------D-----KRVILYDSRYH---EMRDLGIT  350 (371)
Q Consensus       329 ~~----------~-----~~l~~yd~~~~---~~~~v~~~  350 (371)
                      ..          +     ..++..+++++   +|+|-.++
T Consensus       249 GGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvk  288 (521)
T KOG1230|consen  249 GGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVK  288 (521)
T ss_pred             cchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeecc
Confidence            21          0     23777888773   35555554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=95.23  E-value=0.0056  Score=54.91  Aligned_cols=46  Identities=26%  Similarity=0.376  Sum_probs=40.5

Q ss_pred             CCCCC----HHHHHHHHhcCCccccceeeecccchhhhcCChHHHHHHhc
Q 036281           10 LGDLS----DDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLK   55 (371)
Q Consensus        10 ~~~LP----~dll~~IL~rLP~ksl~r~r~VcK~W~~li~~p~F~~~~~~   55 (371)
                      +..||    +++.+.||+.|...+|..+..|||+|+.+++++-..++-..
T Consensus        75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WKkLie  124 (499)
T KOG0281|consen   75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWKKLIE  124 (499)
T ss_pred             HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence            35799    99999999999999999999999999999999876665433

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=93.75  E-value=3.3  Score=36.69  Aligned_cols=134  Identities=15%  Similarity=0.178  Sum_probs=78.5

Q ss_pred             cceeccccceEEECceEEEEEecCCCCcEEEEEECCCceEE-EeCCCCCCCC--CcccccCCCcceEEEeCCeEEEEec-
Q 036281          209 FDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQ-EIKGPSVPQT--TTYYQSVKTPWMLGTYDDCLSLLYS-  284 (371)
Q Consensus       209 ~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~~~-~i~~P~~~~~--~~~~~~~~~~~~L~~~~g~L~l~~~-  284 (371)
                      +|..+..+.-|..||.+|+....   ...|+.||+.+++.. ...+|.....  ....+.......+++=+.-|.++.. 
T Consensus        65 Lp~~~~GtG~vVYngslYY~~~~---s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat  141 (250)
T PF02191_consen   65 LPYPWQGTGHVVYNGSLYYNKYN---SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYAT  141 (250)
T ss_pred             EeceeccCCeEEECCcEEEEecC---CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEec
Confidence            44444355668899999998864   368999999999998 7788875432  0001112245667776777777442 


Q ss_pred             CCCCCEEEEEEeeC------CceeEEEEecCCCcceeeeEEeeCCEEEEEEc-----CCeEEEEeCCCCeEEEEEEe
Q 036281          285 DKFAHSFELWIMKG------GFWIKHLTFGPFIETYQPLGFWRKDEFLLESS-----DKRVILYDSRYHEMRDLGIT  350 (371)
Q Consensus       285 ~~~~~~~~iW~L~~------~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~-----~~~l~~yd~~~~~~~~v~~~  350 (371)
                      ......+-|=.|+.      +.|.-.+   +.......+-  -.|.|+....     ..-.+.||..+++-+.+.+.
T Consensus       142 ~~~~g~ivvskld~~tL~v~~tw~T~~---~k~~~~naFm--vCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~  213 (250)
T PF02191_consen  142 EDNNGNIVVSKLDPETLSVEQTWNTSY---PKRSAGNAFM--VCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIP  213 (250)
T ss_pred             CCCCCcEEEEeeCcccCceEEEEEecc---Cchhhcceee--EeeEEEEEEECCCCCcEEEEEEECCCCceeceeee
Confidence            22333466666664      3444221   1221222221  1355655532     23467899988887777664

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=93.61  E-value=5.2  Score=38.23  Aligned_cols=148  Identities=14%  Similarity=0.083  Sum_probs=80.9

Q ss_pred             ceEEEEEcCCC-----ceeecCccccccceeccccceEEECceEEEEEecCCCCcEEEEEECCCce---EEEeCCCCCCC
Q 036281          187 SHVAVYNFSTN-----SWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEV---FQEIKGPSVPQ  258 (371)
Q Consensus       187 ~~~~vy~~~~~-----~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~---~~~i~~P~~~~  258 (371)
                      ..+.+.+...+     .|+.+...   .+..  ....-..+|.+|.++........|++.|+.+-.   |..+-.|....
T Consensus       252 s~v~~~d~~~~~~~~~~~~~l~~~---~~~~--~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~  326 (414)
T PF02897_consen  252 SEVYLLDLDDGGSPDAKPKLLSPR---EDGV--EYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED  326 (414)
T ss_dssp             EEEEEEECCCTTTSS-SEEEEEES---SSS---EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS
T ss_pred             CeEEEEeccccCCCcCCcEEEeCC---CCce--EEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc
Confidence            45556666553     56666321   1110  112335578899888765567899999998765   55433333221


Q ss_pred             CCcccccCCCcceEEEeCCeEEEEecCCCCCEEEEEEeeCCceeEEEEecCCCcceeeeEE-eeCCEEEEEEc----CCe
Q 036281          259 TTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGF-WRKDEFLLESS----DKR  333 (371)
Q Consensus       259 ~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~-~~~~~il~~~~----~~~  333 (371)
                      .        .-..+...++.|.+.........|.++-+. ..|.....-.|..+....+.. ...+++.+...    ...
T Consensus       327 ~--------~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~-~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~  397 (414)
T PF02897_consen  327 V--------SLEDVSLFKDYLVLSYRENGSSRLRVYDLD-DGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPT  397 (414)
T ss_dssp             E--------EEEEEEEETTEEEEEEEETTEEEEEEEETT--TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEE
T ss_pred             e--------eEEEEEEECCEEEEEEEECCccEEEEEECC-CCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCE
Confidence            1        123345578999997654566666776665 145444332232221111211 22556766642    467


Q ss_pred             EEEEeCCCCeEEEEE
Q 036281          334 VILYDSRYHEMRDLG  348 (371)
Q Consensus       334 l~~yd~~~~~~~~v~  348 (371)
                      ++.||+++++.+.+.
T Consensus       398 ~y~~d~~t~~~~~~k  412 (414)
T PF02897_consen  398 VYRYDLATGELTLLK  412 (414)
T ss_dssp             EEEEETTTTCEEEEE
T ss_pred             EEEEECCCCCEEEEE
Confidence            999999999988774

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>smart00284 OLF Olfactomedin-like domains

Probab=93.13  E-value=5.2  Score=35.36  Aligned_cols=134  Identities=16%  Similarity=0.154  Sum_probs=77.1

Q ss_pred             cceeccccceEEECceEEEEEecCCCCcEEEEEECCCceEEEe-CCCCCCCC-C-cccccCCCcceEEEeCCeEEEEe-c
Q 036281          209 FDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEI-KGPSVPQT-T-TYYQSVKTPWMLGTYDDCLSLLY-S  284 (371)
Q Consensus       209 ~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~~~~i-~~P~~~~~-~-~~~~~~~~~~~L~~~~g~L~l~~-~  284 (371)
                      +|..+....-|+.||.+|+....   ...|+.||+.+++.... .+|...-. + ...+.....+.|++=+.-|.++. .
T Consensus        70 Lp~~~~GtG~VVYngslYY~~~~---s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat  146 (255)
T smart00284       70 LPHAGQGTGVVVYNGSLYFNKFN---SHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYAT  146 (255)
T ss_pred             CCCccccccEEEECceEEEEecC---CccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEec
Confidence            34433355679999999996654   35799999999998643 46753211 0 00011124567777777777743 3


Q ss_pred             CCCCCEEEEEEeeC------CceeEEEEecCCCcceeeeEEeeCCEEEEEE-----cCCeEEEEeCCCCeEEEEEEe
Q 036281          285 DKFAHSFELWIMKG------GFWIKHLTFGPFIETYQPLGFWRKDEFLLES-----SDKRVILYDSRYHEMRDLGIT  350 (371)
Q Consensus       285 ~~~~~~~~iW~L~~------~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~-----~~~~l~~yd~~~~~~~~v~~~  350 (371)
                      ......|-|=.|+.      +.|.-.+   +.......+-+  .|.++...     ...-.+.||..|++-+.+.+.
T Consensus       147 ~~~~g~ivvSkLnp~tL~ve~tW~T~~---~k~sa~naFmv--CGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~  218 (255)
T smart00284      147 EQNAGKIVISKLNPATLTIENTWITTY---NKRSASNAFMI--CGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIP  218 (255)
T ss_pred             cCCCCCEEEEeeCcccceEEEEEEcCC---CcccccccEEE--eeEEEEEccCCCCCcEEEEEEECCCCccceeeee
Confidence            34456677777766      3444321   22212222211  35565553     123477899988887766554

>PF13964 Kelch_6: Kelch motif

Probab=92.82  E-value=0.33  Score=30.92  Aligned_cols=37  Identities=14%  Similarity=0.249  Sum_probs=30.4

Q ss_pred             cceEEECceEEEEEecCC---CCcEEEEEECCCceEEEeC
Q 036281          216 IYNVYLNGYCYWVVCRPD---YSKAILAFSMSNEVFQEIK  252 (371)
Q Consensus       216 ~~~v~~~G~lywl~~~~~---~~~~Il~fD~~~e~~~~i~  252 (371)
                      ...|.++|.+|.+.....   ....+..||+++.+|+.++
T Consensus         5 ~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~   44 (50)
T PF13964_consen    5 HSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP   44 (50)
T ss_pred             CEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence            366899999999986642   3468999999999999984

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.50  E-value=1.7  Score=38.48  Aligned_cols=123  Identities=15%  Similarity=0.120  Sum_probs=75.6

Q ss_pred             EEEeeecceEEEee-cCCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCC
Q 036281          107 IHIGPYDGIFCLLK-SHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHD  185 (371)
Q Consensus       107 ~~~~s~~GLl~~~~-~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~  185 (371)
                      -+.+.-+|-|-+.. ..+++.-.||.++.-..+|.+.....       ..-.+..|+...    +++..         -.
T Consensus       193 Gi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~-------gsRriwsdpig~----~witt---------wg  252 (353)
T COG4257         193 GICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKA-------GSRRIWSDPIGR----AWITT---------WG  252 (353)
T ss_pred             ceEECCCCcEEEEeccccceEEcccccCCcceecCCCcccc-------cccccccCccCc----EEEec---------cC
Confidence            45555566666554 23444889999997778887764211       112334444321    22221         11


Q ss_pred             cceEEEEEcCCCceeecCccccccceeccccceEEEC--ceEEEEEecCCCCcEEEEEECCCceEEEeCCCCCC
Q 036281          186 FSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLN--GYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVP  257 (371)
Q Consensus       186 ~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~--G~lywl~~~~~~~~~Il~fD~~~e~~~~i~~P~~~  257 (371)
                      .-.+..|+..+.+|++-+.     |...-+...++++  |. -|+..-+  ...|..||.++++|+++++|...
T Consensus       253 ~g~l~rfdPs~~sW~eypL-----Pgs~arpys~rVD~~gr-VW~sea~--agai~rfdpeta~ftv~p~pr~n  318 (353)
T COG4257         253 TGSLHRFDPSVTSWIEYPL-----PGSKARPYSMRVDRHGR-VWLSEAD--AGAIGRFDPETARFTVLPIPRPN  318 (353)
T ss_pred             CceeeEeCcccccceeeeC-----CCCCCCcceeeeccCCc-EEeeccc--cCceeecCcccceEEEecCCCCC
Confidence            5678899999999998742     2221133445555  44 4665433  56899999999999999988764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=92.21  E-value=7  Score=33.73  Aligned_cols=195  Identities=10%  Similarity=-0.016  Sum_probs=93.1

Q ss_pred             ecceEEEeecCCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEE
Q 036281          112 YDGIFCLLKSHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAV  191 (371)
Q Consensus       112 ~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~v  191 (371)
                      .+|.+........++.+|+.|++...--..+..   .   ..  .     +...+-+|+...   .        .-.+..
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~---~---~~--~-----~~~~~~~v~v~~---~--------~~~l~~   90 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP---I---SG--A-----PVVDGGRVYVGT---S--------DGSLYA   90 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC---G---GS--G-----EEEETTEEEEEE---T--------TSEEEE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc---c---cc--e-----eeeccccccccc---c--------eeeeEe
Confidence            677777775443339999999886532222211   0   00  0     111122232222   0        125666


Q ss_pred             EEcCCC--ceee-cCccccccceeccccceEEECceEEEEEecCCCCcEEEEEECCCce--EEE-eCCCCCCCCCccccc
Q 036281          192 YNFSTN--SWRD-LKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEV--FQE-IKGPSVPQTTTYYQS  265 (371)
Q Consensus       192 y~~~~~--~Wr~-~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~--~~~-i~~P~~~~~~~~~~~  265 (371)
                      ++..++  .|+. .... +... ..........++.+|.....+    .|.++|+++.+  |.. +..|..... ... .
T Consensus        91 ~d~~tG~~~W~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~g----~l~~~d~~tG~~~w~~~~~~~~~~~~-~~~-~  162 (238)
T PF13360_consen   91 LDAKTGKVLWSIYLTSS-PPAG-VRSSSSPAVDGDRLYVGTSSG----KLVALDPKTGKLLWKYPVGEPRGSSP-ISS-F  162 (238)
T ss_dssp             EETTTSCEEEEEEE-SS-CTCS-TB--SEEEEETTEEEEEETCS----EEEEEETTTTEEEEEEESSTT-SS---EEE-E
T ss_pred             cccCCcceeeeeccccc-cccc-cccccCceEecCEEEEEeccC----cEEEEecCCCcEEEEeecCCCCCCcc-eee-e
Confidence            775554  6984 4321 1112 111223344466777666544    89999998764  433 233332111 000 0


Q ss_pred             CCCcceEEEeCCeEEEEecCCCCCEEEEEEeeCC--ceeEEEEecCCCcceeeeEEeeCCEEEEEEcCCeEEEEeCCCCe
Q 036281          266 VKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGG--FWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHE  343 (371)
Q Consensus       266 ~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~~--~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~~  343 (371)
                      ......++..+|.+++...  ....+.+ -++..  .|.+.     ..... ......++.+++...++.++.+|++|++
T Consensus       163 ~~~~~~~~~~~~~v~~~~~--~g~~~~~-d~~tg~~~w~~~-----~~~~~-~~~~~~~~~l~~~~~~~~l~~~d~~tG~  233 (238)
T PF13360_consen  163 SDINGSPVISDGRVYVSSG--DGRVVAV-DLATGEKLWSKP-----ISGIY-SLPSVDGGTLYVTSSDGRLYALDLKTGK  233 (238)
T ss_dssp             TTEEEEEECCTTEEEEECC--TSSEEEE-ETTTTEEEEEEC-----SS-EC-ECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred             cccccceEEECCEEEEEcC--CCeEEEE-ECCCCCEEEEec-----CCCcc-CCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence            0012334444675555442  2223444 33332  24221     11111 1122346667777778999999999999


Q ss_pred             EEEE
Q 036281          344 MRDL  347 (371)
Q Consensus       344 ~~~v  347 (371)
                      ..|.
T Consensus       234 ~~W~  237 (238)
T PF13360_consen  234 VVWQ  237 (238)
T ss_dssp             EEEE
T ss_pred             EEeE
Confidence            8774

...

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.68  E-value=4.1  Score=37.42  Aligned_cols=169  Identities=18%  Similarity=0.197  Sum_probs=99.6

Q ss_pred             ceEEEEEcCCCceeecCccccccceeccccceEEECc-eEEEEEecCC--------------------------------
Q 036281          187 SHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNG-YCYWVVCRPD--------------------------------  233 (371)
Q Consensus       187 ~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G-~lywl~~~~~--------------------------------  233 (371)
                      -.+..|+..+++|..++..   .|.......++.++| .+|.+.....                                
T Consensus       113 nd~Y~y~p~~nsW~kl~t~---sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~  189 (381)
T COG3055         113 NDAYRYDPSTNSWHKLDTR---SPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKA  189 (381)
T ss_pred             eeeEEecCCCChhheeccc---cccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCH
Confidence            4578899999999999754   333333345556665 6777654320                                


Q ss_pred             ----CCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCCcceEEEeCCeEEEEec--CCCCCEEEEEEeeC----Ccee
Q 036281          234 ----YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYS--DKFAHSFELWIMKG----GFWI  302 (371)
Q Consensus       234 ----~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~--~~~~~~~~iW~L~~----~~W~  302 (371)
                          ....+++||..+++|+..- .|.....         ....+..+++|.++.-  ...-++-++|+.+-    ..|.
T Consensus       190 ~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~a---------Gsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~  260 (381)
T COG3055         190 EDYFFNKEVLSYDPSTNQWRNLGENPFYGNA---------GSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWL  260 (381)
T ss_pred             HHhcccccccccccccchhhhcCcCcccCcc---------CcceeecCCeEEEEcceecCCccccceeEEEeccCceeee
Confidence                2456999999999999875 5654322         2334556777888652  23445555555542    7888


Q ss_pred             EEEEecCCC-----cceeeeEEeeCCEEEEEE-------------------------cCCeEEEEeCCCCeEEEEEEe--
Q 036281          303 KHLTFGPFI-----ETYQPLGFWRKDEFLLES-------------------------SDKRVILYDSRYHEMRDLGIT--  350 (371)
Q Consensus       303 ~~~~i~~~~-----~~~~~~~~~~~~~il~~~-------------------------~~~~l~~yd~~~~~~~~v~~~--  350 (371)
                      +.-..++..     ++..-+.---++++++..                         ....++.+|  ++.|+.++--  
T Consensus       261 ~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~  338 (381)
T COG3055         261 KLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQ  338 (381)
T ss_pred             eccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCC
Confidence            876654321     111111111245555541                         124577777  8889888442  


Q ss_pred             cceeEE-EEeEeeeeecCCC
Q 036281          351 GLWFSV-HILKESLIRMKDE  369 (371)
Q Consensus       351 ~~~~~~-~~y~~Sl~~~~~~  369 (371)
                      +..... ..|-+.++.|++|
T Consensus       339 ~l~YG~s~~~nn~vl~IGGE  358 (381)
T COG3055         339 GLAYGVSLSYNNKVLLIGGE  358 (381)
T ss_pred             CccceEEEecCCcEEEEccc
Confidence            222333 7777788887766

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=90.93  E-value=8.8  Score=33.27  Aligned_cols=121  Identities=8%  Similarity=0.141  Sum_probs=67.2

Q ss_pred             EECceEEEEEecCCCCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEE--eCC--eEEEEec---CCCCCEEE
Q 036281          220 YLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGT--YDD--CLSLLYS---DKFAHSFE  292 (371)
Q Consensus       220 ~~~G~lywl~~~~~~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~--~~g--~L~l~~~---~~~~~~~~  292 (371)
                      .+||-+ ++...    ..+...|+.|.++..++.|......    .......++-  ..+  |+..+..   ......++
T Consensus         3 sCnGLl-c~~~~----~~~~V~NP~T~~~~~LP~~~~~~~~----~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~   73 (230)
T TIGR01640         3 PCDGLI-CFSYG----KRLVVWNPSTGQSRWLPTPKSRRSN----KESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQ   73 (230)
T ss_pred             ccceEE-EEecC----CcEEEECCCCCCEEecCCCCCcccc----cccceEEEeecccCCcEEEEEEEeecCCCCCccEE
Confidence            468887 45433    3799999999999998765431110    0000011111  011  1111111   12346788


Q ss_pred             EEEeeCCceeEEEEecCCCcceeeeEEeeCCEEEEEEc-C-----CeEEEEeCCCCeEEE-EEEe
Q 036281          293 LWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESS-D-----KRVILYDSRYHEMRD-LGIT  350 (371)
Q Consensus       293 iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~-~-----~~l~~yd~~~~~~~~-v~~~  350 (371)
                      |+.+...+|.......+.....+. ++.-+|.+..... .     ..++.||+++.++++ +..+
T Consensus        74 Vys~~~~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P  137 (230)
T TIGR01640        74 VYTLGSNSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLP  137 (230)
T ss_pred             EEEeCCCCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecC
Confidence            999988889886532221111222 4445777755432 1     169999999999995 6554

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>smart00612 Kelch Kelch domain

Probab=88.22  E-value=0.88  Score=27.96  Aligned_cols=19  Identities=37%  Similarity=0.677  Sum_probs=16.4

Q ss_pred             cceEEEEEcCCCceeecCc
Q 036281          186 FSHVAVYNFSTNSWRDLKG  204 (371)
Q Consensus       186 ~~~~~vy~~~~~~Wr~~~~  204 (371)
                      ...+++|+.+++.|+..+.
T Consensus        14 ~~~v~~yd~~~~~W~~~~~   32 (47)
T smart00612       14 LKSVEVYDPETNKWTPLPS   32 (47)
T ss_pred             eeeEEEECCCCCeEccCCC
Confidence            5678999999999998874

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=88.08  E-value=17  Score=33.79  Aligned_cols=116  Identities=10%  Similarity=0.157  Sum_probs=71.3

Q ss_pred             CceEEEEEecCCCCcEEEEEECCCce--E---EEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecCCCCCEEEEEEe
Q 036281          222 NGYCYWVVCRPDYSKAILAFSMSNEV--F---QEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIM  296 (371)
Q Consensus       222 ~G~lywl~~~~~~~~~Il~fD~~~e~--~---~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L  296 (371)
                      +|..-|.+..+  ...|..|++..+.  +   ..+.+|.....        +.. ...-+|+..++.. .....+.++.+
T Consensus       154 dg~~v~v~dlG--~D~v~~~~~~~~~~~l~~~~~~~~~~G~GP--------Rh~-~f~pdg~~~Yv~~-e~s~~v~v~~~  221 (345)
T PF10282_consen  154 DGRFVYVPDLG--ADRVYVYDIDDDTGKLTPVDSIKVPPGSGP--------RHL-AFSPDGKYAYVVN-ELSNTVSVFDY  221 (345)
T ss_dssp             TSSEEEEEETT--TTEEEEEEE-TTS-TEEEEEEEECSTTSSE--------EEE-EE-TTSSEEEEEE-TTTTEEEEEEE
T ss_pred             CCCEEEEEecC--CCEEEEEEEeCCCceEEEeeccccccCCCC--------cEE-EEcCCcCEEEEec-CCCCcEEEEee
Confidence            46666666555  5688888887765  4   33456655433        111 2223566555443 56788999999


Q ss_pred             eC--CceeEEEEecCCC-c-----ceeeeEEeeCCEEEEEE--cCCeEEEEeC--CCCeEEEEEE
Q 036281          297 KG--GFWIKHLTFGPFI-E-----TYQPLGFWRKDEFLLES--SDKRVILYDS--RYHEMRDLGI  349 (371)
Q Consensus       297 ~~--~~W~~~~~i~~~~-~-----~~~~~~~~~~~~il~~~--~~~~l~~yd~--~~~~~~~v~~  349 (371)
                      ..  ..++...++...+ .     ...-+.+.+||+.+++.  ..+.+..|++  ++++++.++.
T Consensus       222 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~  286 (345)
T PF10282_consen  222 DPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT  286 (345)
T ss_dssp             ETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred             cccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence            84  6777777776432 1     23446677889877764  3567888987  5677877755

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=87.72  E-value=24  Score=32.87  Aligned_cols=151  Identities=14%  Similarity=0.143  Sum_probs=78.9

Q ss_pred             cceEEEEEcCCCc--eeecCccccccceeccccceE-EECce-EEEEEecCCCCcEEEEEECC--CceEEEeC----CCC
Q 036281          186 FSHVAVYNFSTNS--WRDLKGFEMRFDYMVDRIYNV-YLNGY-CYWVVCRPDYSKAILAFSMS--NEVFQEIK----GPS  255 (371)
Q Consensus       186 ~~~~~vy~~~~~~--Wr~~~~~~~~~~~~~~~~~~v-~~~G~-lywl~~~~~~~~~Il~fD~~--~e~~~~i~----~P~  255 (371)
                      .-.+.+|+.+.+.  .......  ..+........+ .-+|. +|.....   ...|.+|++.  +.+++.++    +|.
T Consensus       165 ~D~v~~~~~~~~~~~l~~~~~~--~~~~G~GPRh~~f~pdg~~~Yv~~e~---s~~v~v~~~~~~~g~~~~~~~~~~~~~  239 (345)
T PF10282_consen  165 ADRVYVYDIDDDTGKLTPVDSI--KVPPGSGPRHLAFSPDGKYAYVVNEL---SNTVSVFDYDPSDGSLTEIQTISTLPE  239 (345)
T ss_dssp             TTEEEEEEE-TTS-TEEEEEEE--ECSTTSSEEEEEE-TTSSEEEEEETT---TTEEEEEEEETTTTEEEEEEEEESCET
T ss_pred             CCEEEEEEEeCCCceEEEeecc--ccccCCCCcEEEEcCCcCEEEEecCC---CCcEEEEeecccCCceeEEEEeeeccc
Confidence            4467788877654  5442211  111111111112 22554 5555433   3567777776  66665543    344


Q ss_pred             CCCCCcccccCCCcceEEE-eCCeEEEEecCCCCCEEEEEEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEE--c
Q 036281          256 VPQTTTYYQSVKTPWMLGT-YDDCLSLLYSDKFAHSFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLES--S  330 (371)
Q Consensus       256 ~~~~~~~~~~~~~~~~L~~-~~g~L~l~~~~~~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~--~  330 (371)
                      ....      ......+.. -+|+..++.. ....+|.++.++.  ..-+....+.......+-+.+.++|+.+++.  .
T Consensus       240 ~~~~------~~~~~~i~ispdg~~lyvsn-r~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  240 GFTG------ENAPAEIAISPDGRFLYVSN-RGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             TSCS------SSSEEEEEE-TTSSEEEEEE-CTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred             cccc------cCCceeEEEecCCCEEEEEe-ccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence            3222      002223433 4676555543 5689999999965  4444444443222234556777788866653  4


Q ss_pred             CCeEEEE--eCCCCeEEEEE
Q 036281          331 DKRVILY--DSRYHEMRDLG  348 (371)
Q Consensus       331 ~~~l~~y--d~~~~~~~~v~  348 (371)
                      ++.+.+|  |.++++++.+.
T Consensus       313 s~~v~vf~~d~~tG~l~~~~  332 (345)
T PF10282_consen  313 SNTVSVFDIDPDTGKLTPVG  332 (345)
T ss_dssp             TTEEEEEEEETTTTEEEEEE
T ss_pred             CCeEEEEEEeCCCCcEEEec
Confidence            5667777  55788988875

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=86.75  E-value=1.7  Score=26.97  Aligned_cols=37  Identities=8%  Similarity=0.130  Sum_probs=30.1

Q ss_pred             cceEEECceEEEEEecCC---CCcEEEEEECCCceEEEeC
Q 036281          216 IYNVYLNGYCYWVVCRPD---YSKAILAFSMSNEVFQEIK  252 (371)
Q Consensus       216 ~~~v~~~G~lywl~~~~~---~~~~Il~fD~~~e~~~~i~  252 (371)
                      ...+.++|.+|-+.....   ....+..||+.+.+|+.++
T Consensus         5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~   44 (47)
T PF01344_consen    5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELP   44 (47)
T ss_dssp             EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred             CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcC
Confidence            367899999999986542   3578999999999999873

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=85.50  E-value=2.7  Score=26.50  Aligned_cols=38  Identities=18%  Similarity=0.230  Sum_probs=30.1

Q ss_pred             cceEEECceEEEEEec--CC---CCcEEEEEECCCceEEEeCC
Q 036281          216 IYNVYLNGYCYWVVCR--PD---YSKAILAFSMSNEVFQEIKG  253 (371)
Q Consensus       216 ~~~v~~~G~lywl~~~--~~---~~~~Il~fD~~~e~~~~i~~  253 (371)
                      ...+.++|++|.+...  ..   ....+-.||+++.+|+.++.
T Consensus         5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~   47 (49)
T PF07646_consen    5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP   47 (49)
T ss_pred             eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence            3568899999998866  11   45679999999999998754

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=84.61  E-value=34  Score=31.83  Aligned_cols=128  Identities=15%  Similarity=0.110  Sum_probs=68.7

Q ss_pred             eEEEeecCCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEc
Q 036281          115 IFCLLKSHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNF  194 (371)
Q Consensus       115 Ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~  194 (371)
                      +|+....... +|+++.|+....+|.......     ..  +.+..   .+.  +..+.........+......+|+++-
T Consensus        79 Iv~~d~~~~t-~vyDt~t~av~~~P~l~~pk~-----~p--isv~V---G~~--LY~m~~~~~~~~~~~~~~~~FE~l~~  145 (342)
T PF07893_consen   79 IVAVDQSGRT-LVYDTDTRAVATGPRLHSPKR-----CP--ISVSV---GDK--LYAMDRSPFPEPAGRPDFPCFEALVY  145 (342)
T ss_pred             EEEEcCCCCe-EEEECCCCeEeccCCCCCCCc-----ce--EEEEe---CCe--EEEeeccCccccccCccceeEEEecc
Confidence            3333334556 999999999999988654211     11  12111   122  44443221111000000115566522


Q ss_pred             ----------CCCceeecCccccccceec------cccceEEECceEEEEEecCCCCcEEEEEECCCceEEEe---CCCC
Q 036281          195 ----------STNSWRDLKGFEMRFDYMV------DRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEI---KGPS  255 (371)
Q Consensus       195 ----------~~~~Wr~~~~~~~~~~~~~------~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~~~~i---~~P~  255 (371)
                                ++.+|+.++..  ++....      ....+|+ +|.--|+...+ ....--+||..+.+|+..   .+|.
T Consensus       146 ~~~~~~~~~~~~w~W~~LP~P--Pf~~~~~~~~~~i~sYavv-~g~~I~vS~~~-~~~GTysfDt~~~~W~~~GdW~LPF  221 (342)
T PF07893_consen  146 RPPPDDPSPEESWSWRSLPPP--PFVRDRRYSDYRITSYAVV-DGRTIFVSVNG-RRWGTYSFDTESHEWRKHGDWMLPF  221 (342)
T ss_pred             ccccccccCCCcceEEcCCCC--CccccCCcccceEEEEEEe-cCCeEEEEecC-CceEEEEEEcCCcceeeccceecCc
Confidence                      22467777532  333222      2346666 89888886553 013689999999999987   5787


Q ss_pred             CCCC
Q 036281          256 VPQT  259 (371)
Q Consensus       256 ~~~~  259 (371)
                      ....
T Consensus       222 ~G~a  225 (342)
T PF07893_consen  222 HGQA  225 (342)
T ss_pred             CCcc
Confidence            5543

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=84.18  E-value=28  Score=32.42  Aligned_cols=54  Identities=13%  Similarity=0.263  Sum_probs=36.6

Q ss_pred             eEEEEEcCCCceeecCccccccceeccccceEEECceEEEEEecCCC-CcEEEEEECCCc
Q 036281          188 HVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDY-SKAILAFSMSNE  246 (371)
Q Consensus       188 ~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~-~~~Il~fD~~~e  246 (371)
                      ....|+..+..|+...+.  .+|.   ...+.++..-=-|+.-.... ...|-+.|+.+.
T Consensus       200 GTysfDt~~~~W~~~GdW--~LPF---~G~a~y~~el~~W~Gls~~~~~~~lca~dv~~~  254 (342)
T PF07893_consen  200 GTYSFDTESHEWRKHGDW--MLPF---HGQAEYVPELDLWFGLSSDGGGGHLCACDVSSA  254 (342)
T ss_pred             EEEEEEcCCcceeeccce--ecCc---CCccEECCCcCeEEEeccCCCCcEEEEEecccc
Confidence            466777777899999866  4454   34666766655677655421 248999999874

>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa

Probab=82.87  E-value=11  Score=29.44  Aligned_cols=72  Identities=14%  Similarity=0.136  Sum_probs=48.7

Q ss_pred             EEEEEECCCc--eEEEeCCCCCCCCCcc----cccCCCcceEEEeCCeEEEEec--C------CCCCEEEEEEeeC----
Q 036281          237 AILAFSMSNE--VFQEIKGPSVPQTTTY----YQSVKTPWMLGTYDDCLSLLYS--D------KFAHSFELWIMKG----  298 (371)
Q Consensus       237 ~Il~fD~~~e--~~~~i~~P~~~~~~~~----~~~~~~~~~L~~~~g~L~l~~~--~------~~~~~~~iW~L~~----  298 (371)
                      +|+.+|+-.+  .++.|++|........    .......-.++..+|+|-++..  .      .....+.+|+|..    
T Consensus         7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~~   86 (131)
T PF07762_consen    7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEGS   86 (131)
T ss_pred             CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCCC
Confidence            6889998765  6788888876532000    0011223356678999988652  1      3567899999997    


Q ss_pred             -CceeEEEEec
Q 036281          299 -GFWIKHLTFG  308 (371)
Q Consensus       299 -~~W~~~~~i~  308 (371)
                       ..|.+.+++.
T Consensus        87 ~~~W~~d~~v~   97 (131)
T PF07762_consen   87 SWEWKKDCEVD   97 (131)
T ss_pred             CCCEEEeEEEE
Confidence             6799999886

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=80.90  E-value=45  Score=31.57  Aligned_cols=117  Identities=6%  Similarity=-0.046  Sum_probs=64.0

Q ss_pred             cceEEECceEEEEEecCCCCcEEEEEECCCc--eEEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecCCCCCEEEE
Q 036281          216 IYNVYLNGYCYWVVCRPDYSKAILAFSMSNE--VFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFEL  293 (371)
Q Consensus       216 ~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e--~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i  293 (371)
                      ..++..+|.+|.....+    .|.+||.++.  .|+. +++..................+..+|++++..   ....  +
T Consensus        63 ~sPvv~~~~vy~~~~~g----~l~ald~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~---~~g~--l  132 (394)
T PRK11138         63 LHPAVAYNKVYAADRAG----LVKALDADTGKEIWSV-DLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS---EKGQ--V  132 (394)
T ss_pred             eccEEECCEEEEECCCC----eEEEEECCCCcEeeEE-cCCCcccccccccccccccccEEECCEEEEEc---CCCE--E
Confidence            36789999999887665    7999998754  4543 33321110000000000122445567776643   1222  3


Q ss_pred             EEee--C--CceeEEEEecCCCcceeeeEEeeCCEEEEEEcCCeEEEEeCCCCeEEEE
Q 036281          294 WIMK--G--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRDL  347 (371)
Q Consensus       294 W~L~--~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~~~~~v  347 (371)
                      ..++  .  ..|+....   ......|+.  .++.+++...++.++.+|.+|++..+-
T Consensus       133 ~ald~~tG~~~W~~~~~---~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~  185 (394)
T PRK11138        133 YALNAEDGEVAWQTKVA---GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWT  185 (394)
T ss_pred             EEEECCCCCCcccccCC---CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeee
Confidence            3333  2  56765421   111223433  266777777778899999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	371
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.12
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.09
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	99.07
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.05
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.04
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.03
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.02
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.87
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.83
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.8
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	98.76
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	98.76
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	98.72
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	98.67
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.61
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	98.58
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.53
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	98.45
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.39
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.65
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.62
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.61
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.49
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.4
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.6
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.21
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	93.52
3jrp_A	379	Fusion protein of protein transport protein SEC13	92.73
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	92.66
3jro_A	753	Fusion protein of protein transport protein SEC13	91.48
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	88.23
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	87.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	86.58
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	84.32
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	82.59
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	81.7
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	81.4
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	81.22
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	80.7

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.12  E-value=5.9e-08  Score=87.67  Aligned_cols=193  Identities=9%  Similarity=0.011  Sum_probs=121.5

Q ss_pred             CceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeec
Q 036281          123 TLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDL  202 (371)
Q Consensus       123 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~  202 (371)
                      .+ +++||.|++|..+|+.+..+  .   ....+  .++     -+++.+......     .....+++|+..+++|+.+
T Consensus        91 ~~-~~~d~~~~~W~~~~~~p~~r--~---~~~~~--~~~-----~~iyv~GG~~~~-----~~~~~~~~yd~~~~~W~~~  152 (308)
T 1zgk_A           91 AL-DCYNPMTNQWSPCAPMSVPR--N---RIGVG--VID-----GHIYAVGGSHGC-----IHHNSVERYEPERDEWHLV  152 (308)
T ss_dssp             CE-EEEETTTTEEEECCCCSSCC--B---TCEEE--EET-----TEEEEECCEETT-----EECCCEEEEETTTTEEEEC
T ss_pred             eE-EEECCCCCeEeECCCCCcCc--c---ccEEE--EEC-----CEEEEEcCCCCC-----cccccEEEECCCCCeEeEC
Confidence            46 99999999999998766431  1   11111  111     245555432221     1245799999999999999


Q ss_pred             CccccccceeccccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeCC-CCCCCCCcccccCCCcceEEEeCCeE
Q 036281          203 KGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIKG-PSVPQTTTYYQSVKTPWMLGTYDDCL  279 (371)
Q Consensus       203 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~~-P~~~~~~~~~~~~~~~~~L~~~~g~L  279 (371)
                      +..    |........+.++|.+|-+.....  ....+..||+.+++|+.+.. |...          .....+..+|+|
T Consensus       153 ~~~----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----------~~~~~~~~~~~i  218 (308)
T 1zgk_A          153 APM----LTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIR----------SGAGVCVLHNCI  218 (308)
T ss_dssp             CCC----SSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCC----------BSCEEEEETTEE
T ss_pred             CCC----CccccceEEEEECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCcc----------ccceEEEECCEE
Confidence            743    322223466788999999875432  13569999999999998852 3322          234566779999


Q ss_pred             EEEec-CCCCCEEEEEEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEEc------CCeEEEEeCCCCeEEEEEE
Q 036281          280 SLLYS-DKFAHSFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESS------DKRVILYDSRYHEMRDLGI  349 (371)
Q Consensus       280 ~l~~~-~~~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~~~~~~~v~~  349 (371)
                      .++.- ......-++|+++-  ..|++.-.+ |.+.......+ -+++|++...      ...+..||+++++|+++.-
T Consensus       219 yv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~  295 (308)
T 1zgk_A          219 YAAGGYDGQDQLNSVERYDVETETWTFVAPM-KHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTR  295 (308)
T ss_dssp             EEECCBCSSSBCCCEEEEETTTTEEEECCCC-SSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE
T ss_pred             EEEeCCCCCCccceEEEEeCCCCcEEECCCC-CCCccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCC
Confidence            99762 11222345566654  889876533 22212222222 3678877632      3569999999999999843

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.09  E-value=3.2e-08  Score=89.24  Aligned_cols=210  Identities=10%  Similarity=-0.014  Sum_probs=130.2

Q ss_pred             EEEeeecceEEEeec------CCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCC
Q 036281          107 IHIGPYDGIFCLLKS------HTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQR  180 (371)
Q Consensus       107 ~~~~s~~GLl~~~~~------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~  180 (371)
                      ...+..+|.|.+.-+      ..+ .++||.|++|..+|+.+..+  .   ....+  .++     -+++.+.....   
T Consensus        49 ~~~~~~~~~lyv~GG~~~~~~~~~-~~~d~~~~~W~~~~~~p~~r--~---~~~~~--~~~-----~~iyv~GG~~~---  112 (306)
T 3ii7_A           49 AACVFWDNVVYILGGSQLFPIKRM-DCYNVVKDSWYSKLGPPTPR--D---SLAAC--AAE-----GKIYTSGGSEV---  112 (306)
T ss_dssp             CEEEEETTEEEEECCBSSSBCCEE-EEEETTTTEEEEEECCSSCC--B---SCEEE--EET-----TEEEEECCBBT---
T ss_pred             eEEEEECCEEEEEeCCCCCCcceE-EEEeCCCCeEEECCCCCccc--c---ceeEE--EEC-----CEEEEECCCCC---
Confidence            444456776655432      345 89999999999998766421  1   11111  111     24555543221   


Q ss_pred             CCCCCcceEEEEEcCCCceeecCccccccceeccccceEEECceEEEEEecCC--C----CcEEEEEECCCceEEEeC-C
Q 036281          181 DSFHDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD--Y----SKAILAFSMSNEVFQEIK-G  253 (371)
Q Consensus       181 ~~~~~~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~----~~~Il~fD~~~e~~~~i~-~  253 (371)
                       +......+++|+..+++|+.++..    |........+.++|.+|.+.....  .    ...+..||+.+++|+.+. +
T Consensus       113 -~~~~~~~~~~~d~~~~~W~~~~~~----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~  187 (306)
T 3ii7_A          113 -GNSALYLFECYDTRTESWHTKPSM----LTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM  187 (306)
T ss_dssp             -TBSCCCCEEEEETTTTEEEEECCC----SSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCC
T ss_pred             -CCcEeeeEEEEeCCCCceEeCCCC----cCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCc
Confidence             122356899999999999999643    322224466888999999875321  1    456999999999999985 3


Q ss_pred             CCCCCCCcccccCCCcceEEEeCCeEEEEecC-CCCCEEEEEEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEEc
Q 036281          254 PSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSD-KFAHSFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESS  330 (371)
Q Consensus       254 P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~-~~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~  330 (371)
                      |...          ....++..+|+|.++.-. .....-++|+++-  ..|+..-.+ |.+.......+. +++|++...
T Consensus       188 p~~r----------~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~-~~~i~v~GG  255 (306)
T 3ii7_A          188 IEAR----------KNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM-PWKGVTVKCAAV-GSIVYVLAG  255 (306)
T ss_dssp             SSCC----------BSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCC-SCCBSCCEEEEE-TTEEEEEEC
T ss_pred             cchh----------hcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCC-CCCccceeEEEE-CCEEEEEeC
Confidence            3322          234567789999997521 1111234666664  789876433 222222223333 678877743


Q ss_pred             ------CCeEEEEeCCCCeEEEEEE
Q 036281          331 ------DKRVILYDSRYHEMRDLGI  349 (371)
Q Consensus       331 ------~~~l~~yd~~~~~~~~v~~  349 (371)
                            ...+..||+++++|+.+.-
T Consensus       256 ~~~~~~~~~~~~yd~~~~~W~~~~~  280 (306)
T 3ii7_A          256 FQGVGRLGHILEYNTETDKWVANSK  280 (306)
T ss_dssp             BCSSSBCCEEEEEETTTTEEEEEEE
T ss_pred             cCCCeeeeeEEEEcCCCCeEEeCCC
Confidence                  2579999999999999843

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=99.07  E-value=3e-11  Score=107.08  Aligned_cols=51  Identities=22%  Similarity=0.567  Sum_probs=47.4

Q ss_pred             ccCCCCCHHHHHHHHhcCCccccc-eeeecccchhhhcCChHHHHHHhccCC
Q 036281            8 KTLGDLSDDMMIETLSRLPVKSLM-RFKCVCISWCDLVKDPNFIYKHLKRDD   58 (371)
Q Consensus         8 ~~~~~LP~dll~~IL~rLP~ksl~-r~r~VcK~W~~li~~p~F~~~~~~~~~   58 (371)
                      ..+..||+||+.+||+|||+++|+ ||++|||+|+++|++|.|.+.++.+..
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g  100 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEG  100 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTT
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccC
Confidence            456899999999999999999999 999999999999999999999987763

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.05  E-value=3.5e-11  Score=78.64  Aligned_cols=46  Identities=22%  Similarity=0.437  Sum_probs=39.4

Q ss_pred             hcccCCCCCHHHHHHHHhcCCccccceeeecccchhhhcCChHHHH
Q 036281            6 RVKTLGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIY   51 (371)
Q Consensus         6 ~~~~~~~LP~dll~~IL~rLP~ksl~r~r~VcK~W~~li~~p~F~~   51 (371)
                      ....+..||+|++.+||.+||++++.++++|||+|+.++.++.|.+
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~   50 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQ   50 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC-
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Confidence            3456789999999999999999999999999999999999998754

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.04  E-value=9.2e-08  Score=85.94  Aligned_cols=208  Identities=8%  Similarity=0.035  Sum_probs=128.5

Q ss_pred             EEEeeecceEEEeec-------CCceEEEeccccc---cccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEe
Q 036281          107 IHIGPYDGIFCLLKS-------HTLINLWNVSLNE---YRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLW  176 (371)
Q Consensus       107 ~~~~s~~GLl~~~~~-------~~~~~V~NP~T~~---~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~  176 (371)
                      ...+..+|.|.+.-+       +.+ +++||.|++   |..+++.+..+  .   .   .+....   + -+++.+....
T Consensus        56 ~~~~~~~~~l~v~GG~~~~~~~~~~-~~~d~~~~~~~~W~~~~~~p~~r--~---~---~~~~~~---~-~~lyv~GG~~  122 (301)
T 2vpj_A           56 VASVSLHDRIYVIGGYDGRSRLSSV-ECLDYTADEDGVWYSVAPMNVRR--G---L---AGATTL---G-DMIYVSGGFD  122 (301)
T ss_dssp             CEEEEETTEEEEECCBCSSCBCCCE-EEEETTCCTTCCCEEECCCSSCC--B---S---CEEEEE---T-TEEEEECCBC
T ss_pred             ccEEEECCEEEEEcCCCCCccCceE-EEEECCCCCCCeeEECCCCCCCc--c---c---eeEEEE---C-CEEEEEcccC
Confidence            444555666655431       346 999999999   99998766431  1   1   111111   1 2455554322


Q ss_pred             cCCCCCCCCcceEEEEEcCCCceeecCccccccceeccccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeC-C
Q 036281          177 NDQRDSFHDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIK-G  253 (371)
Q Consensus       177 ~~~~~~~~~~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~-~  253 (371)
                      .     ......+++|+..+++|+.++..    |........+.++|.+|.+.....  ....+..||+.+.+|+.+. +
T Consensus       123 ~-----~~~~~~~~~~d~~~~~W~~~~~~----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~  193 (301)
T 2vpj_A          123 G-----SRRHTSMERYDPNIDQWSMLGDM----QTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM  193 (301)
T ss_dssp             S-----SCBCCEEEEEETTTTEEEEEEEC----SSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCC
T ss_pred             C-----CcccceEEEEcCCCCeEEECCCC----CCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCC
Confidence            1     12246799999999999998633    322224466788999999875432  2356999999999999984 3


Q ss_pred             CCCCCCCcccccCCCcceEEEeCCeEEEEecCC-CCCEEEEEEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEEc
Q 036281          254 PSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDK-FAHSFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESS  330 (371)
Q Consensus       254 P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~-~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~  330 (371)
                      |...          ....++..+|+|.++.-.. ....-++|.++-  ..|++.-.+ |.+.......+ -+++|++...
T Consensus       194 p~~r----------~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~-~~~~i~v~GG  261 (301)
T 2vpj_A          194 ATKR----------SGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSM-TTPRCYVGATV-LRGRLYAIAG  261 (301)
T ss_dssp             SSCC----------BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEE-ETTEEEEECC
T ss_pred             Cccc----------ccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCC-CCcccceeEEE-ECCEEEEEcC
Confidence            3322          2345677899999976311 111234555554  789887543 22222222333 3678877642


Q ss_pred             C------CeEEEEeCCCCeEEEEE
Q 036281          331 D------KRVILYDSRYHEMRDLG  348 (371)
Q Consensus       331 ~------~~l~~yd~~~~~~~~v~  348 (371)
                      .      ..+..||+++++|+.+.
T Consensus       262 ~~~~~~~~~v~~yd~~~~~W~~~~  285 (301)
T 2vpj_A          262 YDGNSLLSSIECYDPIIDSWEVVT  285 (301)
T ss_dssp             BCSSSBEEEEEEEETTTTEEEEEE
T ss_pred             cCCCcccccEEEEcCCCCeEEEcC
Confidence            1      46899999999999884

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.03  E-value=1.2e-07  Score=85.96  Aligned_cols=191  Identities=12%  Similarity=0.106  Sum_probs=120.7

Q ss_pred             EEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeecCcc
Q 036281          126 NLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGF  205 (371)
Q Consensus       126 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~~~~  205 (371)
                      +++||.|++|..+|+.+..+.     .   .+....   + -+++.+......   +......+++|+..+++|+.++..
T Consensus        81 ~~~d~~~~~W~~~~~~p~~r~-----~---~~~~~~---~-~~iyv~GG~~~~---~~~~~~~~~~yd~~~~~W~~~~~~  145 (318)
T 2woz_A           81 FQLDNVSSEWVGLPPLPSARC-----L---FGLGEV---D-DKIYVVAGKDLQ---TEASLDSVLCYDPVAAKWSEVKNL  145 (318)
T ss_dssp             EEEETTTTEEEECSCBSSCBC-----S---CEEEEE---T-TEEEEEEEEBTT---TCCEEEEEEEEETTTTEEEEECCC
T ss_pred             EEEeCCCCcEEECCCCCcccc-----c---cceEEE---C-CEEEEEcCccCC---CCcccceEEEEeCCCCCEeECCCC
Confidence            899999999999987664311     1   111111   1 245555443211   112356799999999999998743


Q ss_pred             ccccceeccccceEEECceEEEEEecCC---CCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCCcceEEEeCCeEEE
Q 036281          206 EMRFDYMVDRIYNVYLNGYCYWVVCRPD---YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTYDDCLSL  281 (371)
Q Consensus       206 ~~~~~~~~~~~~~v~~~G~lywl~~~~~---~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~~g~L~l  281 (371)
                          |........+.++|.+|.+.....   ....+..||+.+.+|+.+. +|...          .....+..+|+|.+
T Consensus       146 ----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----------~~~~~~~~~~~iyv  211 (318)
T 2woz_A          146 ----PIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR----------SMFGVAIHKGKIVI  211 (318)
T ss_dssp             ----SSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC----------BSCEEEEETTEEEE
T ss_pred             ----CCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc----------ccceEEEECCEEEE
Confidence                222223466789999999875321   2346999999999999985 33322          23456778999999


Q ss_pred             EecC-CCCCEEEEEEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEEc---------------CCeEEEEeCCCCe
Q 036281          282 LYSD-KFAHSFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESS---------------DKRVILYDSRYHE  343 (371)
Q Consensus       282 ~~~~-~~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~---------------~~~l~~yd~~~~~  343 (371)
                      +.-. .....-++|+++-  ..|++.-.+ |.+.......+ -+++|++...               ...+..||+++++
T Consensus       212 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          212 AGGVTEDGLSASVEAFDLKTNKWEVMTEF-PQERSSISLVS-LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             EEEEETTEEEEEEEEEETTTCCEEECCCC-SSCCBSCEEEE-ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             EcCcCCCCccceEEEEECCCCeEEECCCC-CCcccceEEEE-ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            7621 1222346677665  789886543 22222222333 3677777631               2468999999999


Q ss_pred             EEEE
Q 036281          344 MRDL  347 (371)
Q Consensus       344 ~~~v  347 (371)
                      |+++
T Consensus       290 W~~~  293 (318)
T 2woz_A          290 WAGM  293 (318)
T ss_dssp             EEEE
T ss_pred             ehhh
Confidence            9998

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.02  E-value=1.1e-07  Score=85.50  Aligned_cols=207  Identities=11%  Similarity=0.110  Sum_probs=128.1

Q ss_pred             EEeeecceEEEeec-------CCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCC
Q 036281          108 HIGPYDGIFCLLKS-------HTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQR  180 (371)
Q Consensus       108 ~~~s~~GLl~~~~~-------~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~  180 (371)
                      ..+..+|.|.+.-+       +.+ .++||.|++|..+|+.+..+.     ....+.  ++   +  +++.+.....   
T Consensus        56 ~~~~~~~~lyv~GG~~~~~~~~~~-~~~d~~~~~W~~~~~~p~~r~-----~~~~~~--~~---~--~iyv~GG~~~---  119 (302)
T 2xn4_A           56 GMVYMAGLVFAVGGFNGSLRVRTV-DSYDPVKDQWTSVANMRDRRS-----TLGAAV--LN---G--LLYAVGGFDG---  119 (302)
T ss_dssp             EEEEETTEEEEESCBCSSSBCCCE-EEEETTTTEEEEECCCSSCCB-----SCEEEE--ET---T--EEEEEEEECS---
T ss_pred             eEEEECCEEEEEeCcCCCccccce-EEECCCCCceeeCCCCCcccc-----ceEEEE--EC---C--EEEEEcCCCC---
Confidence            34455676655431       346 999999999999987664311     111111  11   1  4555543221   


Q ss_pred             CCCCCcceEEEEEcCCCceeecCccccccceeccccceEEECceEEEEEecCC----CCcEEEEEECCCceEEEeC-CCC
Q 036281          181 DSFHDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD----YSKAILAFSMSNEVFQEIK-GPS  255 (371)
Q Consensus       181 ~~~~~~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~----~~~~Il~fD~~~e~~~~i~-~P~  255 (371)
                        ......+++|+..+++|+.++..    |........+.++|.+|-+.....    ....+..||+.+++|+.+. +|.
T Consensus       120 --~~~~~~~~~~d~~~~~W~~~~~~----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~  193 (302)
T 2xn4_A          120 --STGLSSVEAYNIKSNEWFHVAPM----NTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMST  193 (302)
T ss_dssp             --SCEEEEEEEEETTTTEEEEECCC----SSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSS
T ss_pred             --CccCceEEEEeCCCCeEeecCCC----CCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcc
Confidence              12246799999999999999743    222223456788999999864321    1346899999999999984 333


Q ss_pred             CCCCCcccccCCCcceEEEeCCeEEEEecCC-CCCEEEEEEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEEc--
Q 036281          256 VPQTTTYYQSVKTPWMLGTYDDCLSLLYSDK-FAHSFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESS--  330 (371)
Q Consensus       256 ~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~-~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~--  330 (371)
                      ..          ....++..+|+|.++.-.. ....-++|+++-  ..|+..-.+ |.+.......+ -+++|++...  
T Consensus       194 ~r----------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~r~~~~~~~-~~~~i~v~GG~~  261 (302)
T 2xn4_A          194 RR----------SGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADM-NMCRRNAGVCA-VNGLLYVVGGDD  261 (302)
T ss_dssp             CC----------BSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEE-ETTEEEEECCBC
T ss_pred             cc----------ccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCC-CCccccCeEEE-ECCEEEEECCcC
Confidence            22          2345677899999976211 111235666664  789986543 22212222232 3778877742  


Q ss_pred             ----CCeEEEEeCCCCeEEEEE
Q 036281          331 ----DKRVILYDSRYHEMRDLG  348 (371)
Q Consensus       331 ----~~~l~~yd~~~~~~~~v~  348 (371)
                          ...+..||+++++|+.+.
T Consensus       262 ~~~~~~~v~~yd~~~~~W~~~~  283 (302)
T 2xn4_A          262 GSCNLASVEYYNPTTDKWTVVS  283 (302)
T ss_dssp             SSSBCCCEEEEETTTTEEEECS
T ss_pred             CCcccccEEEEcCCCCeEEECC
Confidence                245999999999999874

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.00  E-value=9.8e-08  Score=86.48  Aligned_cols=192  Identities=10%  Similarity=0.052  Sum_probs=122.3

Q ss_pred             EEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeecCcc
Q 036281          126 NLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGF  205 (371)
Q Consensus       126 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~~~~  205 (371)
                      +++||.|++|..+|+.+..+  .      ..+....   + -+++.+......  .+......+++|+..+++|+.++..
T Consensus        70 ~~~d~~~~~W~~~~~~p~~r--~------~~~~~~~---~-~~lyv~GG~~~~--~~~~~~~~~~~~d~~~~~W~~~~~~  135 (315)
T 4asc_A           70 LQFDHLDSEWLGMPPLPSPR--C------LFGLGEA---L-NSIYVVGGREIK--DGERCLDSVMCYDRLSFKWGESDPL  135 (315)
T ss_dssp             EEEETTTTEEEECCCBSSCE--E------SCEEEEE---T-TEEEEECCEESS--TTCCBCCCEEEEETTTTEEEECCCC
T ss_pred             EEecCCCCeEEECCCCCcch--h------ceeEEEE---C-CEEEEEeCCcCC--CCCcccceEEEECCCCCcEeECCCC
Confidence            89999999999998776421  1      1111111   1 255555543210  1123356899999999999999743


Q ss_pred             ccccceeccccceEEECceEEEEEecCC---CCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCCcceEEEeCCeEEE
Q 036281          206 EMRFDYMVDRIYNVYLNGYCYWVVCRPD---YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTYDDCLSL  281 (371)
Q Consensus       206 ~~~~~~~~~~~~~v~~~G~lywl~~~~~---~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~~g~L~l  281 (371)
                          |........+.++|.+|.+.....   ....+..||+.+.+|+.+. +|...          .....+..+|+|.+
T Consensus       136 ----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----------~~~~~~~~~~~iyv  201 (315)
T 4asc_A          136 ----PYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR----------SLFGATVHDGRIIV  201 (315)
T ss_dssp             ----SSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCC----------BSCEEEEETTEEEE
T ss_pred             ----CCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCch----------hceEEEEECCEEEE
Confidence                322224466889999999886521   2356999999999999885 34322          23456778999999


Q ss_pred             EecC-CCCCEEEEEEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEEcC---------------CeEEEEeCCCCe
Q 036281          282 LYSD-KFAHSFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESSD---------------KRVILYDSRYHE  343 (371)
Q Consensus       282 ~~~~-~~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~---------------~~l~~yd~~~~~  343 (371)
                      +.-. .....-++|+++-  ..|+..-.+ |.+.......+ -+++|++....               ..+..||+++++
T Consensus       202 ~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          202 AAGVTDTGLTSSAEVYSITDNKWAPFEAF-PQERSSLSLVS-LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             EEEECSSSEEEEEEEEETTTTEEEEECCC-SSCCBSCEEEE-ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             EeccCCCCccceEEEEECCCCeEEECCCC-CCcccceeEEE-ECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            7631 2223346777765  789987543 22222222333 36677776321               348899999999


Q ss_pred             EEEE
Q 036281          344 MRDL  347 (371)
Q Consensus       344 ~~~v  347 (371)
                      |+.+
T Consensus       280 W~~~  283 (315)
T 4asc_A          280 WEGV  283 (315)
T ss_dssp             EEEE
T ss_pred             hhhh
Confidence            9998

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.87  E-value=1.9e-07  Score=86.11  Aligned_cols=217  Identities=12%  Similarity=0.058  Sum_probs=124.6

Q ss_pred             EEeeecceEEEee---cCCceEEEeccc--cccccCCCCC-CCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCC
Q 036281          108 HIGPYDGIFCLLK---SHTLINLWNVSL--NEYRGLPECR-PRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRD  181 (371)
Q Consensus       108 ~~~s~~GLl~~~~---~~~~~~V~NP~T--~~~~~LP~~~-~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~  181 (371)
                      ..+..+|.|.+.-   ...+ +++||.+  ++|..+|+.+ ..+  .   ....+  .++   +  +|+.+.........
T Consensus        14 ~~~~~~~~iyv~GG~~~~~~-~~~d~~~~~~~W~~~~~~p~~~R--~---~~~~~--~~~---~--~lyv~GG~~~~~~~   80 (357)
T 2uvk_A           14 TGAIDNDTVYIGLGSAGTAW-YKLDTQAKDKKWTALAAFPGGPR--D---QATSA--FID---G--NLYVFGGIGKNSEG   80 (357)
T ss_dssp             EEEEETTEEEEECGGGTTCE-EEEETTSSSCCEEECCCCTTCCC--B---SCEEE--EET---T--EEEEECCEEECTTS
T ss_pred             EEEEECCEEEEEeCcCCCeE-EEEccccCCCCeeECCCCCCCcC--c---cceEE--EEC---C--EEEEEcCCCCCCCc
Confidence            3344466665543   3456 9999984  8999998766 321  1   11111  111   1  45555433110000


Q ss_pred             CCCCcceEEEEEcCCCceeecCccccccceeccccceEEECceEEEEEecCC----------------------------
Q 036281          182 SFHDFSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD----------------------------  233 (371)
Q Consensus       182 ~~~~~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~----------------------------  233 (371)
                      .......+++|+..+++|+.++...   |........+.++|.+|.+.....                            
T Consensus        81 ~~~~~~~v~~yd~~~~~W~~~~~~~---p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (357)
T 2uvk_A           81 LTQVFNDVHKYNPKTNSWVKLMSHA---PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYF  157 (357)
T ss_dssp             CEEECCCEEEEETTTTEEEECSCCC---SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cceeeccEEEEeCCCCcEEECCCCC---CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhc
Confidence            0122467999999999999997542   122223355779999999886431                            


Q ss_pred             --------CCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCCcceEEEeCCeEEEEecC--CCCCEEEEEEee---C-
Q 036281          234 --------YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSD--KFAHSFELWIMK---G-  298 (371)
Q Consensus       234 --------~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~--~~~~~~~iW~L~---~-  298 (371)
                              ....+..||+.+.+|+.+. +|....         ....++..+|+|.++.-.  .....-++|.++   + 
T Consensus       158 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~---------~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~  228 (357)
T 2uvk_A          158 DKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGT---------AGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNN  228 (357)
T ss_dssp             SSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCC---------BSCEEEEETTEEEEECCEEETTEECCCEEEEECC---
T ss_pred             cccccccCCcccEEEEeCCCCcEEECCCCCCCCc---------ccccEEEECCEEEEEeeecCCCcccCceEEEEecCCC
Confidence                    0247999999999999884 343211         125677789999997521  111234566664   2 


Q ss_pred             CceeEEEEecCCCcceeeeEEeeCCEEEEEEcC-----------------------CeEEEEeCCCCeEEEEEE
Q 036281          299 GFWIKHLTFGPFIETYQPLGFWRKDEFLLESSD-----------------------KRVILYDSRYHEMRDLGI  349 (371)
Q Consensus       299 ~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~-----------------------~~l~~yd~~~~~~~~v~~  349 (371)
                      ..|+++-.+..........++..+++|++....                       ..+..||+++++|+.+.-
T Consensus       229 ~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~  302 (357)
T 2uvk_A          229 LKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE  302 (357)
T ss_dssp             CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE
T ss_pred             CcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC
Confidence            789886544211111222233346788776421                       257899999999999854

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.83  E-value=6.9e-07  Score=80.14  Aligned_cols=193  Identities=10%  Similarity=0.065  Sum_probs=120.9

Q ss_pred             CCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCc---
Q 036281          122 HTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNS---  198 (371)
Q Consensus       122 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~---  198 (371)
                      ..+ +++||.|++|..+|..+..+  .   ....+  ..+     -+++.+.....     ......+++|+..++.   
T Consensus        31 ~~~-~~~d~~~~~W~~~~~~p~~r--~---~~~~~--~~~-----~~l~v~GG~~~-----~~~~~~~~~~d~~~~~~~~   92 (301)
T 2vpj_A           31 DVV-EKYDPKTQEWSFLPSITRKR--R---YVASV--SLH-----DRIYVIGGYDG-----RSRLSSVECLDYTADEDGV   92 (301)
T ss_dssp             CCE-EEEETTTTEEEECCCCSSCC--B---SCEEE--EET-----TEEEEECCBCS-----SCBCCCEEEEETTCCTTCC
T ss_pred             eEE-EEEcCCCCeEEeCCCCChhh--c---cccEE--EEC-----CEEEEEcCCCC-----CccCceEEEEECCCCCCCe
Confidence            345 99999999999998765421  1   11111  111     14555543211     1235679999999999   


Q ss_pred             eeecCccccccceeccccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCCcceEEEe
Q 036281          199 WRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTY  275 (371)
Q Consensus       199 Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~  275 (371)
                      |+.++..    |........+.++|.+|.+.....  ....+..||+.+.+|+.+. +|...          .....+..
T Consensus        93 W~~~~~~----p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----------~~~~~~~~  158 (301)
T 2vpj_A           93 WYSVAPM----NVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAR----------EGAGLVVA  158 (301)
T ss_dssp             CEEECCC----SSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC----------BSCEEEEE
T ss_pred             eEECCCC----CCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCc----------ccceEEEE
Confidence            9999643    322224466788999999875432  1347999999999999884 34322          23456667


Q ss_pred             CCeEEEEecC-CCCCEEEEEEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEEc------CCeEEEEeCCCCeEEE
Q 036281          276 DDCLSLLYSD-KFAHSFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESS------DKRVILYDSRYHEMRD  346 (371)
Q Consensus       276 ~g~L~l~~~~-~~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~~~~~~~  346 (371)
                      +|+|.++.-. .....-++|+++-  ..|++.-.+ |.+....... .-+++|++...      ...+..||+++++|+.
T Consensus       159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPM-ATKRSGAGVA-LLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCC-SSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCC-CcccccceEE-EECCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence            9999997521 1112334566664  889887433 2222222222 23678877742      3469999999999998


Q ss_pred             EE
Q 036281          347 LG  348 (371)
Q Consensus       347 v~  348 (371)
                      +.
T Consensus       237 ~~  238 (301)
T 2vpj_A          237 VT  238 (301)
T ss_dssp             EC
T ss_pred             CC
Confidence            84

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.80  E-value=4.6e-07  Score=81.56  Aligned_cols=192  Identities=11%  Similarity=0.040  Sum_probs=120.3

Q ss_pred             CCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceee
Q 036281          122 HTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRD  201 (371)
Q Consensus       122 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~  201 (371)
                      ..+ .++||.+++|..+++.+..+.     ....+  .++    + +++.+....      ......+++|+..+++|+.
T Consensus        24 ~~~-~~~d~~~~~W~~~~~~p~~r~-----~~~~~--~~~----~-~lyv~GG~~------~~~~~~~~~~d~~~~~W~~   84 (306)
T 3ii7_A           24 QSC-RYFNPKDYSWTDIRCPFEKRR-----DAACV--FWD----N-VVYILGGSQ------LFPIKRMDCYNVVKDSWYS   84 (306)
T ss_dssp             TSE-EEEETTTTEEEECCCCSCCCB-----SCEEE--EET----T-EEEEECCBS------SSBCCEEEEEETTTTEEEE
T ss_pred             ceE-EEecCCCCCEecCCCCCcccc-----eeEEE--EEC----C-EEEEEeCCC------CCCcceEEEEeCCCCeEEE
Confidence            455 999999999999987764211     11111  111    1 355554321      1225689999999999999


Q ss_pred             cCccccccceeccccceEEECceEEEEEecC-C--CCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCCcceEEEeCC
Q 036281          202 LKGFEMRFDYMVDRIYNVYLNGYCYWVVCRP-D--YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTYDD  277 (371)
Q Consensus       202 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~-~--~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~~g  277 (371)
                      ++..    |........+.++|.+|.+.... .  ....+..||+.+.+|+.+. +|...          .....+..+|
T Consensus        85 ~~~~----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----------~~~~~~~~~~  150 (306)
T 3ii7_A           85 KLGP----PTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR----------CSHGMVEANG  150 (306)
T ss_dssp             EECC----SSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC----------BSCEEEEETT
T ss_pred             CCCC----CccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc----------ceeEEEEECC
Confidence            8643    32222346678899999987543 1  2456999999999999884 34332          2345667899


Q ss_pred             eEEEEec-CCCCC----EEEEEEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEEc------CCeEEEEeCCCCeE
Q 036281          278 CLSLLYS-DKFAH----SFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESS------DKRVILYDSRYHEM  344 (371)
Q Consensus       278 ~L~l~~~-~~~~~----~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~~~~~  344 (371)
                      +|.++.- .....    .-++|.++-  ..|++.-.+ |.+.......+ -+++|++...      ...+..||+++++|
T Consensus       151 ~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  228 (306)
T 3ii7_A          151 LIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPM-IEARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEW  228 (306)
T ss_dssp             EEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCC-SSCCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEE
T ss_pred             EEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCc-cchhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcE
Confidence            9999652 11111    334555554  889887533 22212222222 3677777632      24699999999999


Q ss_pred             EEEE
Q 036281          345 RDLG  348 (371)
Q Consensus       345 ~~v~  348 (371)
                      +.+.
T Consensus       229 ~~~~  232 (306)
T 3ii7_A          229 KMVS  232 (306)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9884

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=98.76  E-value=8.6e-07  Score=79.61  Aligned_cols=192  Identities=10%  Similarity=0.088  Sum_probs=119.5

Q ss_pred             CceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeec
Q 036281          123 TLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDL  202 (371)
Q Consensus       123 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~  202 (371)
                      .+ .++||.+++|..++..+..+  .   .   .+....    +-+++.+.....     ......+++|+..+++|+.+
T Consensus        31 ~~-~~~d~~~~~W~~~~~~p~~r--~---~---~~~~~~----~~~lyv~GG~~~-----~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           31 SV-ECYDFKEERWHQVAELPSRR--C---R---AGMVYM----AGLVFAVGGFNG-----SLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             CE-EEEETTTTEEEEECCCSSCC--B---S---CEEEEE----TTEEEEESCBCS-----SSBCCCEEEEETTTTEEEEE
T ss_pred             cE-EEEcCcCCcEeEcccCCccc--c---c---ceEEEE----CCEEEEEeCcCC-----CccccceEEECCCCCceeeC
Confidence            45 89999999999998665421  1   1   111111    124555543211     12245789999999999999


Q ss_pred             CccccccceeccccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeCC-CCCCCCCcccccCCCcceEEEeCCeE
Q 036281          203 KGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIKG-PSVPQTTTYYQSVKTPWMLGTYDDCL  279 (371)
Q Consensus       203 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~~-P~~~~~~~~~~~~~~~~~L~~~~g~L  279 (371)
                      +..    |........+.++|.+|-+.....  ....+-.||+.+.+|+.+.. |...          .....+..+|+|
T Consensus        93 ~~~----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----------~~~~~~~~~~~i  158 (302)
T 2xn4_A           93 ANM----RDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRR----------SSVGVGVVGGLL  158 (302)
T ss_dssp             CCC----SSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCC----------BSCEEEEETTEE
T ss_pred             CCC----CccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcc----------cCceEEEECCEE
Confidence            743    222223466788999999876432  12468899999999999843 3322          234566789999


Q ss_pred             EEEecC-CCC--CEEEEEEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEEc------CCeEEEEeCCCCeEEEEE
Q 036281          280 SLLYSD-KFA--HSFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESS------DKRVILYDSRYHEMRDLG  348 (371)
Q Consensus       280 ~l~~~~-~~~--~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~~~~~~~v~  348 (371)
                      .++.-. ...  ..-++|..+-  ..|++.-.+ |.+.......+ -+++|++...      ...+..||+++++|+.+.
T Consensus       159 yv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~  236 (302)
T 2xn4_A          159 YAVGGYDVASRQCLSTVECYNATTNEWTYIAEM-STRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA  236 (302)
T ss_dssp             EEECCEETTTTEECCCEEEEETTTTEEEEECCC-SSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC
T ss_pred             EEEeCCCCCCCccccEEEEEeCCCCcEEECCCC-ccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCC
Confidence            997521 111  1224555554  789987443 22222222233 3678877742      246999999999999885

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=98.76  E-value=2.5e-06  Score=77.13  Aligned_cols=200  Identities=8%  Similarity=0.022  Sum_probs=118.5

Q ss_pred             cCCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecC-CCCCCCCcceEEEEEcCCCce
Q 036281          121 SHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWND-QRDSFHDFSHVAVYNFSTNSW  199 (371)
Q Consensus       121 ~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~-~~~~~~~~~~~~vy~~~~~~W  199 (371)
                      +..+ .++||.|++|.. ++.+...++    .  ..+...  ..+  +++.+...... ..........+++|+..+++|
T Consensus        12 G~~~-~~yd~~~~~W~~-~~~~~p~~r----~--~~~~~~--~~~--~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W   79 (315)
T 4asc_A           12 EEGA-VAYDPAANECYC-ASLSSQVPK----N--HVSLVT--KEN--QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW   79 (315)
T ss_dssp             TTEE-EEEETTTTEEEE-EECCCCSCS----S--EEEEEC--TTC--CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE
T ss_pred             CCce-EEECCCCCeEec-CCCCCCCCc----c--ceEEEE--ECC--EEEEEcCcccCCCCCccccccceEEecCCCCeE
Confidence            3556 999999999976 332221111    1  122221  122  34444332111 111111234589999999999


Q ss_pred             eecCccccccceeccccceEEECceEEEEEecC-----CCCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCCcceEE
Q 036281          200 RDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRP-----DYSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLG  273 (371)
Q Consensus       200 r~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~-----~~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~  273 (371)
                      +.++..    |........+.++|.+|.+....     .....+..||+.+.+|+.+. +|...          .....+
T Consensus        80 ~~~~~~----p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r----------~~~~~~  145 (315)
T 4asc_A           80 LGMPPL----PSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV----------YGHTVL  145 (315)
T ss_dssp             EECCCB----SSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC----------BSCEEE
T ss_pred             EECCCC----CcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc----------cceeEE
Confidence            998743    32222346688899999987631     12356899999999999874 34332          234566


Q ss_pred             EeCCeEEEEecC--CCCCEEEEEEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEEc------CCeEEEEeCCCCe
Q 036281          274 TYDDCLSLLYSD--KFAHSFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESS------DKRVILYDSRYHE  343 (371)
Q Consensus       274 ~~~g~L~l~~~~--~~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~~~~  343 (371)
                      ..+|+|.++.-.  .....-++|.++-  ..|++.-.+ |.+.......+ -+++|++...      ...+..||+++++
T Consensus       146 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          146 SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM-QTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCC-SSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCC-CCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCe
Confidence            789999997631  2222335666665  789886543 22222222233 3678777642      1369999999999


Q ss_pred             EEEEE
Q 036281          344 MRDLG  348 (371)
Q Consensus       344 ~~~v~  348 (371)
                      |+.+.
T Consensus       224 W~~~~  228 (315)
T 4asc_A          224 WAPFE  228 (315)
T ss_dssp             EEEEC
T ss_pred             EEECC
Confidence            99884

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=98.72  E-value=6.7e-07  Score=80.69  Aligned_cols=197  Identities=14%  Similarity=0.025  Sum_probs=119.2

Q ss_pred             CCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceee
Q 036281          122 HTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRD  201 (371)
Q Consensus       122 ~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~  201 (371)
                      +.+ .++||.|++|..++..+..+.     .   .+....   + -+++.+....... .+......+++|+..+++|+.
T Consensus        39 ~~~-~~~d~~~~~W~~~~~~p~~r~-----~---~~~~~~---~-~~lyv~GG~~~~~-~~~~~~~~~~~~d~~~~~W~~  104 (308)
T 1zgk_A           39 SYL-EAYNPSNGTWLRLADLQVPRS-----G---LAGCVV---G-GLLYAVGGRNNSP-DGNTDSSALDCYNPMTNQWSP  104 (308)
T ss_dssp             CCE-EEEETTTTEEEECCCCSSCCB-----S---CEEEEE---T-TEEEEECCEEEET-TEEEECCCEEEEETTTTEEEE
T ss_pred             ceE-EEEcCCCCeEeECCCCCcccc-----c---ceEEEE---C-CEEEEECCCcCCC-CCCeecceEEEECCCCCeEeE
Confidence            345 999999999999987664211     1   111111   1 2444443321000 001124578999999999999


Q ss_pred             cCccccccceeccccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCCcceEEEeCCe
Q 036281          202 LKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKTPWMLGTYDDC  278 (371)
Q Consensus       202 ~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~~~~L~~~~g~  278 (371)
                      ++..    |........+.++|.+|.+.....  ....+..||+.+.+|+.+. +|...          .....+..+|+
T Consensus       105 ~~~~----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----------~~~~~~~~~~~  170 (308)
T 1zgk_A          105 CAPM----SVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR----------IGVGVAVLNRL  170 (308)
T ss_dssp             CCCC----SSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCC----------BSCEEEEETTE
T ss_pred             CCCC----CcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccc----------cceEEEEECCE
Confidence            9743    222223466788999999864321  1246899999999999884 34332          23456667999


Q ss_pred             EEEEecC-CCCCEEEEEEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEEc------CCeEEEEeCCCCeEEEEE
Q 036281          279 LSLLYSD-KFAHSFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESS------DKRVILYDSRYHEMRDLG  348 (371)
Q Consensus       279 L~l~~~~-~~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~~~~~~~v~  348 (371)
                      |.++.-. .....-++|.++-  ..|++.-.+ |.+.......+ -+++|++...      ...+..||+++++|+.+.
T Consensus       171 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  247 (308)
T 1zgk_A          171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAM-NTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  247 (308)
T ss_dssp             EEEECCBCSSCBCCCEEEEETTTTEEEECCCC-SSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCC-CCccccceEEE-ECCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence            9997621 1111234555554  889876433 22222222233 3678877642      256999999999999884

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=98.67  E-value=2e-06  Score=86.63  Aligned_cols=200  Identities=13%  Similarity=0.130  Sum_probs=119.4

Q ss_pred             CceEEEeccccccccCC-CCC---CCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCc
Q 036281          123 TLINLWNVSLNEYRGLP-ECR---PRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNS  198 (371)
Q Consensus       123 ~~~~V~NP~T~~~~~LP-~~~---~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~  198 (371)
                      .+ +++||.|++|..++ +.+   ...++.   ....+.+..     +-+++.++.....    ......+++|+..+++
T Consensus       413 ~v-~~yd~~~~~W~~~~~~~p~~~~p~~R~---~hs~~~~~~-----~~~lyv~GG~~~~----~~~~~dv~~yd~~t~~  479 (695)
T 2zwa_A          413 EI-LQLSIHYDKIDMKNIEVSSSEVPVARM---CHTFTTISR-----NNQLLLIGGRKAP----HQGLSDNWIFDMKTRE  479 (695)
T ss_dssp             CE-EEEEECSSCEEEEECCCCCSCCCCCCB---SCEEEEETT-----TTEEEEECCBSST----TCBCCCCEEEETTTTE
T ss_pred             cE-EEEECCCCeEEEeccCCCCCCCCcccc---ceEEEEEcc-----CCEEEEEcCCCCC----CCccccEEEEeCCCCc
Confidence            46 99999999999987 422   111111   111111110     1245555432111    1124569999999999


Q ss_pred             eeecCccccccceeccccceEEE-CceEEEEEecCCCCcEEEEEECCCceEEEeCC----CCCCCCCcccccCCCcceEE
Q 036281          199 WRDLKGFEMRFDYMVDRIYNVYL-NGYCYWVVCRPDYSKAILAFSMSNEVFQEIKG----PSVPQTTTYYQSVKTPWMLG  273 (371)
Q Consensus       199 Wr~~~~~~~~~~~~~~~~~~v~~-~G~lywl~~~~~~~~~Il~fD~~~e~~~~i~~----P~~~~~~~~~~~~~~~~~L~  273 (371)
                      |+.++..    |.......++.+ +|.+|.+....... .+..||+.+.+|+.+..    |.....          ...+
T Consensus       480 W~~~~~~----p~~R~~h~~~~~~~~~iyv~GG~~~~~-~v~~yd~~t~~W~~~~~~g~~p~~r~~----------~~a~  544 (695)
T 2zwa_A          480 WSMIKSL----SHTRFRHSACSLPDGNVLILGGVTEGP-AMLLYNVTEEIFKDVTPKDEFFQNSLV----------SAGL  544 (695)
T ss_dssp             EEECCCC----SBCCBSCEEEECTTSCEEEECCBCSSC-SEEEEETTTTEEEECCCSSGGGGSCCB----------SCEE
T ss_pred             EEECCCC----CCCcccceEEEEcCCEEEEECCCCCCC-CEEEEECCCCceEEccCCCCCCCcccc----------eeEE
Confidence            9999743    332223455665 99999987654222 79999999999999863    333221          2223


Q ss_pred             EeC---CeEEEEecC-----CCCCEEEEEEeeCCc------eeEEEEecCCCcceeeeEEeeCCEEEEEEc---------
Q 036281          274 TYD---DCLSLLYSD-----KFAHSFELWIMKGGF------WIKHLTFGPFIETYQPLGFWRKDEFLLESS---------  330 (371)
Q Consensus       274 ~~~---g~L~l~~~~-----~~~~~~~iW~L~~~~------W~~~~~i~~~~~~~~~~~~~~~~~il~~~~---------  330 (371)
                      .++   |+|+++.-.     .....+.+|-++...      |+++...++.+.......+.++++|++...         
T Consensus       545 v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~  624 (695)
T 2zwa_A          545 EFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDR  624 (695)
T ss_dssp             EEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCT
T ss_pred             EEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCC
Confidence            333   889987631     112445555555555      777766433333334444555478887742         


Q ss_pred             CCeEEEEeCCCCeEEEEEEe
Q 036281          331 DKRVILYDSRYHEMRDLGIT  350 (371)
Q Consensus       331 ~~~l~~yd~~~~~~~~v~~~  350 (371)
                      ...+..||+++++|+.+.+.
T Consensus       625 ~~~v~~yd~~t~~W~~~~~p  644 (695)
T 2zwa_A          625 TNSIISLDPLSETLTSIPIS  644 (695)
T ss_dssp             TTSEEEEETTTTEEEECCCC
T ss_pred             CCeEEEEECCCCeEEEeecc
Confidence            34699999999999976554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.61  E-value=3.8e-05  Score=72.51  Aligned_cols=50  Identities=22%  Similarity=0.304  Sum_probs=44.6

Q ss_pred             ccCCCCCHHHHHHHHhcCCccccceeeecccchhhhcCChHHHHHHhccC
Q 036281            8 KTLGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRD   57 (371)
Q Consensus         8 ~~~~~LP~dll~~IL~rLP~ksl~r~r~VcK~W~~li~~p~F~~~~~~~~   57 (371)
                      ..+..||+|++.+||+.|++++|.++.+|||+|+.++.++.+.+....+.
T Consensus        17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~   66 (445)
T 2ovr_B           17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE   66 (445)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTT
T ss_pred             ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeec
Confidence            34678999999999999999999999999999999999999888766443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=98.58  E-value=7.4e-06  Score=74.06  Aligned_cols=206  Identities=11%  Similarity=0.081  Sum_probs=118.5

Q ss_pred             eEEEeecCCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCC-CCCCCCcceEEEEE
Q 036281          115 IFCLLKSHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQ-RDSFHDFSHVAVYN  193 (371)
Q Consensus       115 Ll~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~-~~~~~~~~~~~vy~  193 (371)
                      .|++..+... .++||.|++|...|.+.. .++    ..  .+...  ..  -+|+.+....... .........+++|+
T Consensus        17 ~i~~~GG~~~-~~yd~~~~~W~~~~~~~~-~~r----~~--~~~~~--~~--~~lyv~GG~~~~~~~~~~~~~~~~~~~d   84 (318)
T 2woz_A           17 LILLVNDTAA-VAYDPMENECYLTALAEQ-IPR----NH--SSIVT--QQ--NQVYVVGGLYVDEENKDQPLQSYFFQLD   84 (318)
T ss_dssp             EEEEECSSEE-EEEETTTTEEEEEEECTT-SCS----SE--EEEEC--SS--SCEEEEESSCC-------CCCBEEEEEE
T ss_pred             hhhhccccce-EEECCCCCceecccCCcc-CCc----cc--eEEEE--EC--CEEEEECCcccCccccCCCccccEEEEe
Confidence            3433333445 899999999988443221 111    11  12111  11  2344443211000 00001123489999


Q ss_pred             cCCCceeecCccccccceeccccceEEECceEEEEEecCC----CCcEEEEEECCCceEEEeC-CCCCCCCCcccccCCC
Q 036281          194 FSTNSWRDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD----YSKAILAFSMSNEVFQEIK-GPSVPQTTTYYQSVKT  268 (371)
Q Consensus       194 ~~~~~Wr~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~----~~~~Il~fD~~~e~~~~i~-~P~~~~~~~~~~~~~~  268 (371)
                      ..+++|+.++..    |........+.++|.+|.+.....    ....+-.||+.+.+|+.+. +|...          .
T Consensus        85 ~~~~~W~~~~~~----p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----------~  150 (318)
T 2woz_A           85 NVSSEWVGLPPL----PSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKV----------Y  150 (318)
T ss_dssp             TTTTEEEECSCB----SSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCE----------E
T ss_pred             CCCCcEEECCCC----CccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcc----------c
Confidence            999999998743    322223466788999999886431    2356899999999999884 34332          2


Q ss_pred             cceEEEeCCeEEEEec--CCCCCEEEEEEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEEc------CCeEEEEe
Q 036281          269 PWMLGTYDDCLSLLYS--DKFAHSFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESS------DKRVILYD  338 (371)
Q Consensus       269 ~~~L~~~~g~L~l~~~--~~~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd  338 (371)
                      ....+..+|+|.++.-  ......-++|+++-  ..|++.-.+ |.+.......+ -+++|++...      ...+..||
T Consensus       151 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd  228 (318)
T 2woz_A          151 GHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM-KTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFD  228 (318)
T ss_dssp             SCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCC-SSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEE
T ss_pred             ccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCC-CCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEE
Confidence            2345668999999652  11122234666665  789987533 22222222233 3678777642      24588999


Q ss_pred             CCCCeEEEEE
Q 036281          339 SRYHEMRDLG  348 (371)
Q Consensus       339 ~~~~~~~~v~  348 (371)
                      +++++|+.+.
T Consensus       229 ~~~~~W~~~~  238 (318)
T 2woz_A          229 LKTNKWEVMT  238 (318)
T ss_dssp             TTTCCEEECC
T ss_pred             CCCCeEEECC
Confidence            9999999884

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.53  E-value=3.4e-05  Score=73.15  Aligned_cols=44  Identities=11%  Similarity=0.306  Sum_probs=39.0

Q ss_pred             cCCCCCHHHHHHHHhcCCccccceeeecccchhhhcCC-hHHHHH
Q 036281            9 TLGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKD-PNFIYK   52 (371)
Q Consensus         9 ~~~~LP~dll~~IL~rLP~ksl~r~r~VcK~W~~li~~-p~F~~~   52 (371)
                      .+..||+|++.+||+.||+++|+++..|||+|+.++.+ +...+.
T Consensus        14 ~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~   58 (464)
T 3v7d_B           14 LITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKK   58 (464)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHH
T ss_pred             ChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            35679999999999999999999999999999999998 665444

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=98.45  E-value=3.3e-05  Score=70.84  Aligned_cols=148  Identities=12%  Similarity=0.113  Sum_probs=87.7

Q ss_pred             cceEEEEEcCCCceeecCccccccceecc-ccceEEECceEEEEEecCC---CCcEEEEEEC--CCceEEEeC-CCCCCC
Q 036281          186 FSHVAVYNFSTNSWRDLKGFEMRFDYMVD-RIYNVYLNGYCYWVVCRPD---YSKAILAFSM--SNEVFQEIK-GPSVPQ  258 (371)
Q Consensus       186 ~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~-~~~~v~~~G~lywl~~~~~---~~~~Il~fD~--~~e~~~~i~-~P~~~~  258 (371)
                      ...+++|+..+++|+.++..    |.... ....+.++|.+|.+.....   ....+..||+  .+.+|+.+. +|....
T Consensus       167 ~~~v~~yd~~~~~W~~~~~~----p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~  242 (357)
T 2uvk_A          167 NKFLLSFDPSTQQWSYAGES----PWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG  242 (357)
T ss_dssp             CCEEEEEETTTTEEEEEEEC----SSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC
T ss_pred             cccEEEEeCCCCcEEECCCC----CCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc
Confidence            35899999999999998633    32211 2466888999998864211   1235777876  889999874 233221


Q ss_pred             CCcccccCCCcceEEEeCCeEEEEecCC------------------CCCEEEEEEeeC--CceeEEEEecCCCcceeeeE
Q 036281          259 TTTYYQSVKTPWMLGTYDDCLSLLYSDK------------------FAHSFELWIMKG--GFWIKHLTFGPFIETYQPLG  318 (371)
Q Consensus       259 ~~~~~~~~~~~~~L~~~~g~L~l~~~~~------------------~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~  318 (371)
                      .        ....++..+|+|.++.-..                  ....-++|+++-  ..|++.-.+ |.+.... .+
T Consensus       243 ~--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~-~~  312 (357)
T 2uvk_A          243 V--------AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL-SQGRAYG-VS  312 (357)
T ss_dssp             C--------BSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEEC-SSCCBSS-EE
T ss_pred             c--------ccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCC-CCCcccc-ee
Confidence            1        2345778899999965210                  111234555554  889987654 3322222 22


Q ss_pred             EeeCCEEEEEEc-------CCeEEEEeCCCCeEEEE
Q 036281          319 FWRKDEFLLESS-------DKRVILYDSRYHEMRDL  347 (371)
Q Consensus       319 ~~~~~~il~~~~-------~~~l~~yd~~~~~~~~v  347 (371)
                      +.-+++|++...       ...+..+++++++|.+.
T Consensus       313 ~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~  348 (357)
T 2uvk_A          313 LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ  348 (357)
T ss_dssp             EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred             EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence            334778877632       13588899999998765

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.39  E-value=7.1e-06  Score=77.45  Aligned_cols=49  Identities=24%  Similarity=0.318  Sum_probs=42.0

Q ss_pred             cccCCCCCHH----HHHHHHhcCCccccceeeecccchhhhcCChHHHHHHhc
Q 036281            7 VKTLGDLSDD----MMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLK   55 (371)
Q Consensus         7 ~~~~~~LP~d----ll~~IL~rLP~ksl~r~r~VcK~W~~li~~p~F~~~~~~   55 (371)
                      ...+..||+|    |+..||+.|++++|.++.+|||+|+.++.++.+.+....
T Consensus         8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~   60 (435)
T 1p22_A            8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIE   60 (435)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHH
T ss_pred             cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence            3445679999    999999999999999999999999999998876665443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.65  E-value=0.00041  Score=69.24  Aligned_cols=216  Identities=9%  Similarity=0.001  Sum_probs=117.2

Q ss_pred             eecceEEEeec---CCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcc
Q 036281          111 PYDGIFCLLKS---HTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFS  187 (371)
Q Consensus       111 s~~GLl~~~~~---~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~  187 (371)
                      ..+|.|.+.-+   ..+ .++||.|++|..+++.+..+      ..  .+...-+   +-||+.+......    .....
T Consensus       251 ~~~g~lyv~GG~~~~~v-~~yd~~t~~W~~~~~~~~~R------~~--~s~~~~~---dg~iyv~GG~~~~----~~~~~  314 (656)
T 1k3i_A          251 DGNGQIVVTGGNDAKKT-SLYDSSSDSWIPGPDMQVAR------GY--QSSATMS---DGRVFTIGGSWSG----GVFEK  314 (656)
T ss_dssp             CTTSCEEEECSSSTTCE-EEEEGGGTEEEECCCCSSCC------SS--CEEEECT---TSCEEEECCCCCS----SSCCC
T ss_pred             CCCCCEEEeCCCCCCce-EEecCcCCceeECCCCCccc------cc--cceEEec---CCeEEEEeCcccC----Ccccc
Confidence            45776665542   356 99999999999998766421      11  1111111   1245555431111    12356


Q ss_pred             eEEEEEcCCCceeecCccc-cccceeccccceEEECceEEEEEecCC------CCcEEEEEECCCceEEEeCCCCCCC--
Q 036281          188 HVAVYNFSTNSWRDLKGFE-MRFDYMVDRIYNVYLNGYCYWVVCRPD------YSKAILAFSMSNEVFQEIKGPSVPQ--  258 (371)
Q Consensus       188 ~~~vy~~~~~~Wr~~~~~~-~~~~~~~~~~~~v~~~G~lywl~~~~~------~~~~Il~fD~~~e~~~~i~~P~~~~--  258 (371)
                      .+|+|+..+++|+.++... .+++... ....+..+|.+|.+...+.      ....+..||+.+++|.....+....  
T Consensus       315 ~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~  393 (656)
T 1k3i_A          315 NGEVYSPSSKTWTSLPNAKVNPMLTAD-KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG  393 (656)
T ss_dssp             CEEEEETTTTEEEEETTSCSGGGCCCC-TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTE
T ss_pred             cceEeCCCCCcceeCCCcccccccccc-ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccc
Confidence            7999999999999975321 1222221 1233446777777663321      2347899999999886432111100  


Q ss_pred             -CCcccccCCCcceEE--EeCCeEEEEecCC-------CCCEEEEEEeeC--CceeEEE--EecCCCcceeeeEEeeCCE
Q 036281          259 -TTTYYQSVKTPWMLG--TYDDCLSLLYSDK-------FAHSFELWIMKG--GFWIKHL--TFGPFIETYQPLGFWRKDE  324 (371)
Q Consensus       259 -~~~~~~~~~~~~~L~--~~~g~L~l~~~~~-------~~~~~~iW~L~~--~~W~~~~--~i~~~~~~~~~~~~~~~~~  324 (371)
                       . .   .......++  ..+|+|.++.-..       ....-.|++.+-  ..|.+..  .+ |.+....-..+..+|+
T Consensus       394 ~~-~---~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~m-p~~R~~~~~~~l~~g~  468 (656)
T 1k3i_A          394 VA-P---DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL-YFARTFHTSVVLPDGS  468 (656)
T ss_dssp             EC-C---CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC-SSCCBSCEEEECTTSC
T ss_pred             cC-C---CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCC-CCCcccCCeEECCCCC
Confidence             0 0   000111111  2588888875211       111124444443  6788765  22 2222333334445888


Q ss_pred             EEEEEc------------CCeEEEEeCCCCeEEEEE
Q 036281          325 FLLESS------------DKRVILYDSRYHEMRDLG  348 (371)
Q Consensus       325 il~~~~------------~~~l~~yd~~~~~~~~v~  348 (371)
                      |++...            ...+..||+++++|+.+.
T Consensus       469 i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~  504 (656)
T 1k3i_A          469 TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN  504 (656)
T ss_dssp             EEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred             EEEECCcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence            888742            145899999999999864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.62  E-value=1.2e-05  Score=70.57  Aligned_cols=49  Identities=29%  Similarity=0.323  Sum_probs=45.7

Q ss_pred             CCCCCHHHHHHHHhcCCccccceeeecccchhhhcCChHHHHHHhccCC
Q 036281           10 LGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRDD   58 (371)
Q Consensus        10 ~~~LP~dll~~IL~rLP~ksl~r~r~VcK~W~~li~~p~F~~~~~~~~~   58 (371)
                      +..||+|++..||+.|++++|.++.+|||+|+.+..++.-.+.++.+..
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~   53 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDL   53 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSG
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccC
Confidence            5679999999999999999999999999999999999999988887765

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.61  E-value=0.0014  Score=65.38  Aligned_cols=193  Identities=11%  Similarity=0.058  Sum_probs=108.3

Q ss_pred             eEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeecCc
Q 036281          125 INLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKG  204 (371)
Q Consensus       125 ~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~~~  204 (371)
                      +.++||.|++|..++..+..+..    ......+..+     -+++.+...         ....+++|+..++.|..++.
T Consensus       221 ~~~yd~~t~~w~~~~~~~~~~~~----~~~~~~~~~~-----g~lyv~GG~---------~~~~v~~yd~~t~~W~~~~~  282 (656)
T 1k3i_A          221 TSSWDPSTGIVSDRTVTVTKHDM----FCPGISMDGN-----GQIVVTGGN---------DAKKTSLYDSSSDSWIPGPD  282 (656)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCC----SSCEEEECTT-----SCEEEECSS---------STTCEEEEEGGGTEEEECCC
T ss_pred             EEEEeCCCCcEEeCcccCCCCCC----ccccccCCCC-----CCEEEeCCC---------CCCceEEecCcCCceeECCC
Confidence            38999999999998765432111    1111111111     245555421         12379999999999999864


Q ss_pred             cccccceeccccceEEE-CceEEEEEecCC---CCcEEEEEECCCceEEEeC----CCCCCCCCcccccCCCcceEEEeC
Q 036281          205 FEMRFDYMVDRIYNVYL-NGYCYWVVCRPD---YSKAILAFSMSNEVFQEIK----GPSVPQTTTYYQSVKTPWMLGTYD  276 (371)
Q Consensus       205 ~~~~~~~~~~~~~~v~~-~G~lywl~~~~~---~~~~Il~fD~~~e~~~~i~----~P~~~~~~~~~~~~~~~~~L~~~~  276 (371)
                      .    +........+.+ +|++|-+.....   ....+-.||+.+.+|+.++    .|.....         ...+...+
T Consensus       283 ~----~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~---------~~~~~~~~  349 (656)
T 1k3i_A          283 M----QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD---------KQGLYRSD  349 (656)
T ss_dssp             C----SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC---------TTGGGTTT
T ss_pred             C----CccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc---------ccceeecC
Confidence            3    332223455677 999999876321   2356889999999999873    1221111         00111233


Q ss_pred             CeEEEEec-------CCCCCEEEEEEeeCCceeEEEEecCC-------CcceeeeEE-eeCCEEEEEEcC---------C
Q 036281          277 DCLSLLYS-------DKFAHSFELWIMKGGFWIKHLTFGPF-------IETYQPLGF-WRKDEFLLESSD---------K  332 (371)
Q Consensus       277 g~L~l~~~-------~~~~~~~~iW~L~~~~W~~~~~i~~~-------~~~~~~~~~-~~~~~il~~~~~---------~  332 (371)
                      +++.++..       ......++.|-.+...|.......+.       ......+.+ ..+++|++....         .
T Consensus       350 ~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~  429 (656)
T 1k3i_A          350 NHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATT  429 (656)
T ss_dssp             CSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCC
T ss_pred             CceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCC
Confidence            44433321       01345666666666667654332221       101111111 137788887431         1


Q ss_pred             ---eEEEEeCCCCeEEEEE
Q 036281          333 ---RVILYDSRYHEMRDLG  348 (371)
Q Consensus       333 ---~l~~yd~~~~~~~~v~  348 (371)
                         .+..||+++++|.++.
T Consensus       430 ~~~~v~~yd~~~~~W~~~~  448 (656)
T 1k3i_A          430 NAHIITLGEPGTSPNTVFA  448 (656)
T ss_dssp             CEEEEECCSTTSCCEEEEC
T ss_pred             cceEEEcCCCCCCCeeEEc
Confidence               6889999999998874

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.49  E-value=0.0017  Score=65.25  Aligned_cols=152  Identities=6%  Similarity=-0.108  Sum_probs=96.8

Q ss_pred             cceEEEEEcCCCceeecC-ccc-cccceeccccceEEE--CceEEEEEecCC---CCcEEEEEECCCceEEEeC-CCCCC
Q 036281          186 FSHVAVYNFSTNSWRDLK-GFE-MRFDYMVDRIYNVYL--NGYCYWVVCRPD---YSKAILAFSMSNEVFQEIK-GPSVP  257 (371)
Q Consensus       186 ~~~~~vy~~~~~~Wr~~~-~~~-~~~~~~~~~~~~v~~--~G~lywl~~~~~---~~~~Il~fD~~~e~~~~i~-~P~~~  257 (371)
                      ...+++|+..+++|+.++ ..+ ..+|........+.+  +|.+|.+.....   ....+-.||+.+.+|+.+. +|...
T Consensus       411 ~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R  490 (695)
T 2zwa_A          411 VNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTR  490 (695)
T ss_dssp             CCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCC
T ss_pred             cCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCc
Confidence            456899999999999986 310 112332224566788  999999876442   1245899999999999884 34322


Q ss_pred             CCCcccccCCCcceEEEe-CCeEEEEecCCCCCEEEEEEeeC--CceeEEEEec--CCCcceeeeEE-eeC-CEEEEEEc
Q 036281          258 QTTTYYQSVKTPWMLGTY-DDCLSLLYSDKFAHSFELWIMKG--GFWIKHLTFG--PFIETYQPLGF-WRK-DEFLLESS  330 (371)
Q Consensus       258 ~~~~~~~~~~~~~~L~~~-~g~L~l~~~~~~~~~~~iW~L~~--~~W~~~~~i~--~~~~~~~~~~~-~~~-~~il~~~~  330 (371)
                                .....+.. +|+|+++.-.....  ++|+.+-  ..|+..-...  |.+.......+ ..+ ++|++...
T Consensus       491 ----------~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG  558 (695)
T 2zwa_A          491 ----------FRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGG  558 (695)
T ss_dssp             ----------BSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECC
T ss_pred             ----------ccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECC
Confidence                      23345554 99999976322222  6777765  8898865432  22222222222 223 67877642


Q ss_pred             --------CCeEEEEeCCCCe------EEEEEE
Q 036281          331 --------DKRVILYDSRYHE------MRDLGI  349 (371)
Q Consensus       331 --------~~~l~~yd~~~~~------~~~v~~  349 (371)
                              ...+..||+++++      |+.+.-
T Consensus       559 ~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~  591 (695)
T 2zwa_A          559 GFMDQTTVSDKAIIFKYDAENATEPITVIKKLQ  591 (695)
T ss_dssp             BCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEE
T ss_pred             cCCCCCeeeCcEEEEEccCCccccceEEEEcCC
Confidence                    2469999999999      777754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.40  E-value=3.1e-05  Score=70.34  Aligned_cols=44  Identities=23%  Similarity=0.483  Sum_probs=38.5

Q ss_pred             hcccCCCCCHHHHHHHHhcCCccccceeeecccchhhhcCChHH
Q 036281            6 RVKTLGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNF   49 (371)
Q Consensus         6 ~~~~~~~LP~dll~~IL~rLP~ksl~r~r~VcK~W~~li~~p~F   49 (371)
                      ....+..||+|++.+||.+|+.+++.+++.|||+|+.++.+|..
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~   48 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   48 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence            34568999999999999999999999999999999999876653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.60  E-value=0.00034  Score=68.60  Aligned_cols=36  Identities=17%  Similarity=0.368  Sum_probs=29.4

Q ss_pred             ccCCCCCHHHHHHHHhcCC-ccccceeeecccchhhh
Q 036281            8 KTLGDLSDDMMIETLSRLP-VKSLMRFKCVCISWCDL   43 (371)
Q Consensus         8 ~~~~~LP~dll~~IL~rLP-~ksl~r~r~VcK~W~~l   43 (371)
                      ..++.||+|++.+||.+|| .+++.+++.|||+|+.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            4578899999999999999 99999999999999988

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.21  E-value=0.00072  Score=66.30  Aligned_cols=34  Identities=18%  Similarity=0.310  Sum_probs=31.7

Q ss_pred             CCCCCHHHHHHHHhcC-Cccccceeeecccchhhh
Q 036281           10 LGDLSDDMMIETLSRL-PVKSLMRFKCVCISWCDL   43 (371)
Q Consensus        10 ~~~LP~dll~~IL~rL-P~ksl~r~r~VcK~W~~l   43 (371)
                      ...||||++.+||.+| |.+++.++..|||+|+.+
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            3579999999999999 899999999999999887

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=93.52  E-value=3.2  Score=35.43  Aligned_cols=191  Identities=9%  Similarity=-0.037  Sum_probs=95.6

Q ss_pred             EEeeecceEEEee--cCCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCC
Q 036281          108 HIGPYDGIFCLLK--SHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHD  185 (371)
Q Consensus       108 ~~~s~~GLl~~~~--~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~  185 (371)
                      +....+|.+.+..  ...+ +++|| +++......+..        .....++.+|+..   ++....   .       .
T Consensus       104 i~~~~~g~l~v~~~~~~~i-~~~d~-~g~~~~~~~~~~--------~~~~~~i~~~~~g---~l~v~~---~-------~  160 (299)
T 2z2n_A          104 ITEGPNGDIWFTEMNGNRI-GRITD-DGKIREYELPNK--------GSYPSFITLGSDN---ALWFTE---N-------Q  160 (299)
T ss_dssp             EEECTTSCEEEEETTTTEE-EEECT-TCCEEEEECSST--------TCCEEEEEECTTS---CEEEEE---T-------T
T ss_pred             eEECCCCCEEEEecCCceE-EEECC-CCCEEEecCCCC--------CCCCceEEEcCCC---CEEEEe---C-------C
Confidence            3334467666655  3355 89999 766554432211        1122566666543   222211   0       0


Q ss_pred             cceEEEEEcCCCceeecCccccccceeccccceEEE--CceEEEEEecCCCCcEEEEEECCCceEEEeCCCCCCCCCccc
Q 036281          186 FSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYL--NGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYY  263 (371)
Q Consensus       186 ~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~  263 (371)
                      ...+.+|+. ++........ ....    ...++.+  +|.+|+....   ...|..+|. +.++..+.+|....     
T Consensus       161 ~~~i~~~~~-~g~~~~~~~~-~~~~----~~~~i~~~~~g~l~v~~~~---~~~i~~~~~-~g~~~~~~~~~~~~-----  225 (299)
T 2z2n_A          161 NNAIGRITE-SGDITEFKIP-TPAS----GPVGITKGNDDALWFVEII---GNKIGRITT-SGEITEFKIPTPNA-----  225 (299)
T ss_dssp             TTEEEEECT-TCCEEEEECS-STTC----CEEEEEECTTSSEEEEETT---TTEEEEECT-TCCEEEEECSSTTC-----
T ss_pred             CCEEEEEcC-CCcEEEeeCC-CCCC----cceeEEECCCCCEEEEccC---CceEEEECC-CCcEEEEECCCCCC-----
Confidence            345666776 5555543110 0010    1123444  4787554432   347999999 77777666653221     


Q ss_pred             ccCCCcceEEE-eCCeEEEEecCCCCCEEEEEEeeCCceeEEEEecCCCcceeeeEEeeCCEEEEEEcCCeEEEEeCCCC
Q 036281          264 QSVKTPWMLGT-YDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYH  342 (371)
Q Consensus       264 ~~~~~~~~L~~-~~g~L~l~~~~~~~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~  342 (371)
                          ....+.. -+|.|.+..  .....+.+|-.+ .. ...+.+.........+.+ .+|.+++....+++..||++++
T Consensus       226 ----~~~~i~~~~~g~l~v~~--~~~~~i~~~d~~-g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~  296 (299)
T 2z2n_A          226 ----RPHAITAGAGIDLWFTE--WGANKIGRLTSN-NI-IEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIKD  296 (299)
T ss_dssp             ----CEEEEEECSTTCEEEEE--TTTTEEEEEETT-TE-EEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC--
T ss_pred             ----CceeEEECCCCCEEEec--cCCceEEEECCC-Cc-eEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCcc
Confidence                1223443 467877654  244556655542 21 122222211112233455 7888999876789999999988


Q ss_pred             eEE
Q 036281          343 EMR  345 (371)
Q Consensus       343 ~~~  345 (371)
                      +++
T Consensus       297 ~~~  299 (299)
T 2z2n_A          297 NME  299 (299)
T ss_dssp             ---
T ss_pred             cCC
Confidence            754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=92.73  E-value=4.9  Score=35.44  Aligned_cols=65  Identities=9%  Similarity=0.175  Sum_probs=43.9

Q ss_pred             CCeEEEEecCCCCCEEEEEEeeC--CceeEEEEecCCCcceeeeEEeeC---CEEEEE-EcCCeEEEEeCCCC
Q 036281          276 DDCLSLLYSDKFAHSFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRK---DEFLLE-SSDKRVILYDSRYH  342 (371)
Q Consensus       276 ~g~L~l~~~~~~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~---~~il~~-~~~~~l~~yd~~~~  342 (371)
                      +|.+.+..  .....+.||-+..  ..|.....+..+.....-+.+.++   +.+++. ..++.+.+||++++
T Consensus       171 ~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          171 ESRKFVTG--GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             TTCEEEEE--ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             CCCEEEEE--eCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence            46665554  3567899999986  557776666544433444566666   676665 56778999999886

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=92.66  E-value=5.9  Score=36.16  Aligned_cols=195  Identities=12%  Similarity=0.123  Sum_probs=93.6

Q ss_pred             eecceEEEeecCCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEE
Q 036281          111 PYDGIFCLLKSHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVA  190 (371)
Q Consensus       111 s~~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~  190 (371)
                      |.+++|.+..++.+ +|||..|++...+-.....       ......+.+.+. +.|-+++-    .        .-.+.
T Consensus       114 S~~n~lAvgld~tV-~lWd~~tg~~~~~~~~~~~-------~~~V~sv~fspd-g~~lasgs----~--------Dg~v~  172 (420)
T 4gga_A          114 SSGNVLAVALDNSV-YLWSASSGDILQLLQMEQP-------GEYISSVAWIKE-GNYLAVGT----S--------SAEVQ  172 (420)
T ss_dssp             CTTSEEEEEETTEE-EEEETTTCCEEEEEECCST-------TCCEEEEEECTT-SSEEEEEE----T--------TSCEE
T ss_pred             CCCCEEEEEeCCEE-EEEECCCCCEEEEEEecCC-------CCcEEEEEECCC-CCEEEEEE----C--------CCeEE
Confidence            55777777777777 9999999987654322210       111244555553 34433221    1        45578


Q ss_pred             EEEcCCCcee-ecCccccccceeccccceEEECceEEEEEecCCCCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCc
Q 036281          191 VYNFSTNSWR-DLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTP  269 (371)
Q Consensus       191 vy~~~~~~Wr-~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~  269 (371)
                      +++..++.-. .....  ..     ....+..+|.+-.....   ...+..+|..........+.....         ..
T Consensus       173 iWd~~~~~~~~~~~~h--~~-----~v~~~s~~~~~l~sgs~---d~~i~~~d~~~~~~~~~~~~~h~~---------~~  233 (420)
T 4gga_A          173 LWDVQQQKRLRNMTSH--SA-----RVGSLSWNSYILSSGSR---SGHIHHHDVRVAEHHVATLSGHSQ---------EV  233 (420)
T ss_dssp             EEETTTTEEEEEECCC--SS-----CEEEEEEETTEEEEEET---TSEEEEEETTSSSCEEEEEECCSS---------CE
T ss_pred             EEEcCCCcEEEEEeCC--CC-----ceEEEeeCCCEEEEEeC---CCceeEeeecccceeeEEeccccc---------ce
Confidence            8888775321 11110  00     11223444433222222   246667776654333222221111         11


Q ss_pred             ceEE-EeCCeEEEEecCCCCCEEEEEEeeC--CceeEEEEecCCCcceeeeEEee-CCEEEEE-E--cCCeEEEEeCCCC
Q 036281          270 WMLG-TYDDCLSLLYSDKFAHSFELWIMKG--GFWIKHLTFGPFIETYQPLGFWR-KDEFLLE-S--SDKRVILYDSRYH  342 (371)
Q Consensus       270 ~~L~-~~~g~L~l~~~~~~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~-~~~il~~-~--~~~~l~~yd~~~~  342 (371)
                      ..+. ..+|...+..  .....+.||-...  ..+...............+.+.. ++.++.. .  .++.+.+||++++
T Consensus       234 ~~~~~~~~g~~l~s~--~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~  311 (420)
T 4gga_A          234 CGLRWAPDGRHLASG--GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG  311 (420)
T ss_dssp             EEEEECTTSSEEEEE--ETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred             eeeeecCCCCeeeee--eccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence            1222 2345544433  3567888998875  22222222222222222333333 3334443 2  3678999999988


Q ss_pred             eEEEE
Q 036281          343 EMRDL  347 (371)
Q Consensus       343 ~~~~v  347 (371)
                      +....
T Consensus       312 ~~~~~  316 (420)
T 4gga_A          312 ACLSA  316 (420)
T ss_dssp             EEEEE
T ss_pred             cccee
Confidence            76544

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=91.48  E-value=7.8  Score=38.76  Aligned_cols=65  Identities=9%  Similarity=0.170  Sum_probs=43.0

Q ss_pred             CeEEEEecCCCCCEEEEEEeeC--CceeEEEEecCCCcceeeeEEeeC---CEEEEE-EcCCeEEEEeCCCCe
Q 036281          277 DCLSLLYSDKFAHSFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRK---DEFLLE-SSDKRVILYDSRYHE  343 (371)
Q Consensus       277 g~L~l~~~~~~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~---~~il~~-~~~~~l~~yd~~~~~  343 (371)
                      |.+.+..  .....+.||-+..  ..+.....+..+..-..-+.+.++   +.+++. ..++.+.+||+++++
T Consensus       170 ~~~l~sg--s~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          170 SRKFVTG--GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  240 (753)
T ss_dssp             GCCEEEE--ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred             CCEEEEE--ECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence            4544444  3567899999987  556666666554433444556666   776665 457789999998863

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=88.23  E-value=9  Score=34.22  Aligned_cols=118  Identities=5%  Similarity=-0.056  Sum_probs=64.7

Q ss_pred             cceEEECceEEEEEecCCCCcEEEEEECCCce--EEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecCCCCCEEEE
Q 036281          216 IYNVYLNGYCYWVVCRPDYSKAILAFSMSNEV--FQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFEL  293 (371)
Q Consensus       216 ~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~--~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i  293 (371)
                      ..++..+|.+|.....+    .|.+||..+.+  |+. .++..... ...............+|.|.+...   ...+..
T Consensus        47 ~~p~v~~~~v~~~~~~g----~v~a~d~~tG~~~W~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~v~v~~~---~g~l~a  117 (376)
T 3q7m_A           47 LHPALADNVVYAADRAG----LVKALNADDGKEIWSV-SLAEKDGW-FSKEPALLSGGVTVSGGHVYIGSE---KAQVYA  117 (376)
T ss_dssp             CCCEEETTEEEEECTTS----EEEEEETTTCCEEEEE-ECCC---C-CSCCCCCEEEEEEEETTEEEEEET---TSEEEE
T ss_pred             eccEEECCEEEEEcCCC----eEEEEEccCCceeeee-cCcccccc-ccccCcccccCceEeCCEEEEEcC---CCEEEE
Confidence            36788999999876554    89999997654  443 33321100 000000012334556777777542   233333


Q ss_pred             EEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEEcCCeEEEEeCCCCeEEEE
Q 036281          294 WIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRDL  347 (371)
Q Consensus       294 W~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~~~~~v  347 (371)
                      +-.+.  ..|....  .. .....|..  .++.+++...++.++.+|.++++..+-
T Consensus       118 ~d~~tG~~~W~~~~--~~-~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~  168 (376)
T 3q7m_A          118 LNTSDGTVAWQTKV--AG-EALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWT  168 (376)
T ss_dssp             EETTTCCEEEEEEC--SS-CCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             EECCCCCEEEEEeC--CC-ceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            33332  3454322  11 11222332  367788877788999999999986655

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=87.00  E-value=15  Score=32.20  Aligned_cols=145  Identities=9%  Similarity=0.036  Sum_probs=80.9

Q ss_pred             cceEEEEEcCCCce-eecCccccccceeccccceEEECceEEEEEecCCCCcEEEEEECCCceEE-EeCCCCCCCCCccc
Q 036281          186 FSHVAVYNFSTNSW-RDLKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQ-EIKGPSVPQTTTYY  263 (371)
Q Consensus       186 ~~~~~vy~~~~~~W-r~~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~~~-~i~~P~~~~~~~~~  263 (371)
                      .-.+.+++..++.- +.++..  ..|..    -.+.-+|.+|.....   ...|..+|+.+.+.. .++.+.....    
T Consensus        63 ~~~v~viD~~t~~~~~~i~~~--~~p~~----i~~~~~g~lyv~~~~---~~~v~~iD~~t~~~~~~i~~g~~~~~----  129 (328)
T 3dsm_A           63 SHVIFAIDINTFKEVGRITGF--TSPRY----IHFLSDEKAYVTQIW---DYRIFIINPKTYEITGYIECPDMDME----  129 (328)
T ss_dssp             GTEEEEEETTTCCEEEEEECC--SSEEE----EEEEETTEEEEEEBS---CSEEEEEETTTTEEEEEEECTTCCTT----
T ss_pred             CCEEEEEECcccEEEEEcCCC--CCCcE----EEEeCCCeEEEEECC---CCeEEEEECCCCeEEEEEEcCCcccc----
Confidence            34678888887654 223211  11211    112257888877632   248999999998764 5665542110    


Q ss_pred             ccCCCcceEEEeCCeEEEEecCCCCCEEEEEEeeCCceeEEEEecCCCcceeeeEEeeCCEEEEEEcC-----------C
Q 036281          264 QSVKTPWMLGTYDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSD-----------K  332 (371)
Q Consensus       264 ~~~~~~~~L~~~~g~L~l~~~~~~~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~-----------~  332 (371)
                        ......+..-+|+|.+... .....+.++-++.....+...+...   ..-+.+.++|++++....           .
T Consensus       130 --~~~p~~i~~~~~~lyv~~~-~~~~~v~viD~~t~~~~~~i~~g~~---p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~  203 (328)
T 3dsm_A          130 --SGSTEQMVQYGKYVYVNCW-SYQNRILKIDTETDKVVDELTIGIQ---PTSLVMDKYNKMWTITDGGYEGSPYGYEAP  203 (328)
T ss_dssp             --TCBCCCEEEETTEEEEEEC-TTCCEEEEEETTTTEEEEEEECSSC---BCCCEECTTSEEEEEBCCBCTTCSSCBCCC
T ss_pred             --CCCcceEEEECCEEEEEcC-CCCCEEEEEECCCCeEEEEEEcCCC---ccceEEcCCCCEEEEECCCccCCccccCCc
Confidence              0011223446888887652 1255666665544333333332211   123556678898887532           5


Q ss_pred             eEEEEeCCCCeEE-EEEE
Q 036281          333 RVILYDSRYHEMR-DLGI  349 (371)
Q Consensus       333 ~l~~yd~~~~~~~-~v~~  349 (371)
                      .+..+|++++++. .+.+
T Consensus       204 ~v~~id~~t~~v~~~~~~  221 (328)
T 3dsm_A          204 SLYRIDAETFTVEKQFKF  221 (328)
T ss_dssp             EEEEEETTTTEEEEEEEC
T ss_pred             eEEEEECCCCeEEEEEec
Confidence            8999999999876 4444

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=86.58  E-value=18  Score=32.55  Aligned_cols=188  Identities=13%  Similarity=0.090  Sum_probs=93.7

Q ss_pred             cceEEEeecCCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEE
Q 036281          113 DGIFCLLKSHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVY  192 (371)
Q Consensus       113 ~GLl~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy  192 (371)
                      +.++....+..+ .|||..+++...+-....        ......+.+.+. +.+-++.-    .        .-.+.+|
T Consensus       104 ~~l~~~~~d~~v-~lw~~~~~~~~~~~~~~~--------~~~v~~v~~s~~-~~~l~~~~----~--------dg~i~iw  161 (401)
T 4aez_A          104 LNVVAVALERNV-YVWNADSGSVSALAETDE--------STYVASVKWSHD-GSFLSVGL----G--------NGLVDIY  161 (401)
T ss_dssp             TSEEEEEETTEE-EEEETTTCCEEEEEECCT--------TCCEEEEEECTT-SSEEEEEE----T--------TSCEEEE
T ss_pred             CCEEEEECCCeE-EEeeCCCCcEeEeeecCC--------CCCEEEEEECCC-CCEEEEEC----C--------CCeEEEE
Confidence            445555555666 999999988665433221        112245556553 33322221    1        3457888


Q ss_pred             EcCCCceee-cCccccccceeccccceEEECceEEEEEecCCCCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcce
Q 036281          193 NFSTNSWRD-LKGFEMRFDYMVDRIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWM  271 (371)
Q Consensus       193 ~~~~~~Wr~-~~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~  271 (371)
                      +..++.-.. ....  .-     .-..+..+|.+......   ...|..+|+....-....+.....         ....
T Consensus       162 d~~~~~~~~~~~~~--~~-----~v~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~---------~v~~  222 (401)
T 4aez_A          162 DVESQTKLRTMAGH--QA-----RVGCLSWNRHVLSSGSR---SGAIHHHDVRIANHQIGTLQGHSS---------EVCG  222 (401)
T ss_dssp             ETTTCCEEEEECCC--SS-----CEEEEEEETTEEEEEET---TSEEEEEETTSSSCEEEEEECCSS---------CEEE
T ss_pred             ECcCCeEEEEecCC--CC-----ceEEEEECCCEEEEEcC---CCCEEEEecccCcceeeEEcCCCC---------CeeE
Confidence            887754221 1110  00     11234445543333333   357888998743221111111111         1122


Q ss_pred             EEE-eCCeEEEEecCCCCCEEEEEEeeCCceeEEEEecCCCcceeeeEEeeCC-EEEEEE---cCCeEEEEeCCCCeEE
Q 036281          272 LGT-YDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKD-EFLLES---SDKRVILYDSRYHEMR  345 (371)
Q Consensus       272 L~~-~~g~L~l~~~~~~~~~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~-~il~~~---~~~~l~~yd~~~~~~~  345 (371)
                      +.. -+|.+.+..  .....+.||-+..  ......+........-+.+.+++ .+++..   .++.+.+||+++++..
T Consensus       223 ~~~~~~~~~l~s~--~~d~~v~iwd~~~--~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~  297 (401)
T 4aez_A          223 LAWRSDGLQLASG--GNDNVVQIWDARS--SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV  297 (401)
T ss_dssp             EEECTTSSEEEEE--ETTSCEEEEETTC--SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE
T ss_pred             EEEcCCCCEEEEE--eCCCeEEEccCCC--CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE
Confidence            222 255555544  3567899998875  22333443333233445555544 455543   3788999999887653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=84.32  E-value=18  Score=30.58  Aligned_cols=204  Identities=13%  Similarity=0.149  Sum_probs=102.5

Q ss_pred             EEeeecceEEEee--cCCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCC
Q 036281          108 HIGPYDGIFCLLK--SHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHD  185 (371)
Q Consensus       108 ~~~s~~GLl~~~~--~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~  185 (371)
                      +..+.+|-+.+..  ...+ .++||..+....++........    .....++.+++..+.  ++...  ..       .
T Consensus        35 v~~~~~g~l~v~~~~~~~i-~~~d~~g~~~~~~~~~~~~~~~----~~~p~~i~~~~~~g~--l~v~~--~~-------~   98 (286)
T 1q7f_A           35 VAVNAQNDIIVADTNNHRI-QIFDKEGRFKFQFGECGKRDSQ----LLYPNRVAVVRNSGD--IIVTE--RS-------P   98 (286)
T ss_dssp             EEECTTCCEEEEEGGGTEE-EEECTTSCEEEEECCBSSSTTC----BSSEEEEEEETTTTE--EEEEE--CG-------G
T ss_pred             EEECCCCCEEEEECCCCEE-EEECCCCcEEEEecccCCCccc----ccCceEEEEEcCCCe--EEEEc--CC-------C
Confidence            3334567666654  3455 8999886655555532211000    112255565433222  22221  00       0


Q ss_pred             cceEEEEEcCCCceeecCccccccceeccccceEEE--CceEEEEEecCCCCcEEEEEECCCceEEEeCCCCCCCCCccc
Q 036281          186 FSHVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYL--NGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYY  263 (371)
Q Consensus       186 ~~~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~  263 (371)
                      ...+.+|+..+..-+.........+      .++.+  +|.+|.....   ...|..||...+....+..+....     
T Consensus        99 ~~~i~~~d~~g~~~~~~~~~~~~~~------~~i~~~~~g~l~v~~~~---~~~i~~~~~~g~~~~~~~~~~~~~-----  164 (286)
T 1q7f_A           99 THQIQIYNQYGQFVRKFGATILQHP------RGVTVDNKGRIIVVECK---VMRVIIFDQNGNVLHKFGCSKHLE-----  164 (286)
T ss_dssp             GCEEEEECTTSCEEEEECTTTCSCE------EEEEECTTSCEEEEETT---TTEEEEECTTSCEEEEEECTTTCS-----
T ss_pred             CCEEEEECCCCcEEEEecCccCCCc------eEEEEeCCCCEEEEECC---CCEEEEEcCCCCEEEEeCCCCccC-----
Confidence            3456777744332222221100111      22333  5776654432   357999998776666654332211     


Q ss_pred             ccCCCcceEEE-eCCeEEEEecCCCCCEEEEEEeeCCceeEEEEecCCCcceee--eEEeeCCEEEEEEc-CC-eEEEEe
Q 036281          264 QSVKTPWMLGT-YDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETYQP--LGFWRKDEFLLESS-DK-RVILYD  338 (371)
Q Consensus       264 ~~~~~~~~L~~-~~g~L~l~~~~~~~~~~~iW~L~~~~W~~~~~i~~~~~~~~~--~~~~~~~~il~~~~-~~-~l~~yd  338 (371)
                          ....+.. -+|.|.+..  .....+.+|-.+. ..  ...+........|  +++..+|.+++... ++ .+..||
T Consensus       165 ----~p~~i~~~~~g~l~v~~--~~~~~i~~~~~~g-~~--~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~  235 (286)
T 1q7f_A          165 ----FPNGVVVNDKQEIFISD--NRAHCVKVFNYEG-QY--LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT  235 (286)
T ss_dssp             ----SEEEEEECSSSEEEEEE--GGGTEEEEEETTC-CE--EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred             ----CcEEEEECCCCCEEEEE--CCCCEEEEEcCCC-CE--EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence                1223443 467876654  2456777776543 22  2233222112334  55566888888864 43 899999


Q ss_pred             CCCCeEEEEEEe
Q 036281          339 SRYHEMRDLGIT  350 (371)
Q Consensus       339 ~~~~~~~~v~~~  350 (371)
                      .+.+.++.+...
T Consensus       236 ~~g~~~~~~~~~  247 (286)
T 1q7f_A          236 QDGQLISALESK  247 (286)
T ss_dssp             TTSCEEEEEEES
T ss_pred             CCCCEEEEEccc
Confidence            887777777553

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=82.59  E-value=24  Score=30.74  Aligned_cols=73  Identities=11%  Similarity=0.101  Sum_probs=45.8

Q ss_pred             eCCe-EEEEecCCCCCEEEEEEeeC-CceeEEEEecCCCcceeeeEEeeCCEEE-EEEc-CCeEEEE--eCCCCeEEEEE
Q 036281          275 YDDC-LSLLYSDKFAHSFELWIMKG-GFWIKHLTFGPFIETYQPLGFWRKDEFL-LESS-DKRVILY--DSRYHEMRDLG  348 (371)
Q Consensus       275 ~~g~-L~l~~~~~~~~~~~iW~L~~-~~W~~~~~i~~~~~~~~~~~~~~~~~il-~~~~-~~~l~~y--d~~~~~~~~v~  348 (371)
                      -+|+ |++..  .....+.+|-++. ..+.....+........-+++.++|+.+ +... ++.+.+|  |.++++++.++
T Consensus       249 pdG~~l~v~~--~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~  326 (347)
T 3hfq_A          249 HDGHFLYVSN--RGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQ  326 (347)
T ss_dssp             TTSCEEEEEE--ETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred             CCCCEEEEEe--CCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEecc
Confidence            4676 44443  3568899999975 4455555553322223446677788754 4443 4677777  88899998775


Q ss_pred             E
Q 036281          349 I  349 (371)
Q Consensus       349 ~  349 (371)
                      -
T Consensus       327 ~  327 (347)
T 3hfq_A          327 K  327 (347)
T ss_dssp             E
T ss_pred             c
Confidence            4

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=81.70  E-value=23  Score=29.89  Aligned_cols=188  Identities=12%  Similarity=0.158  Sum_probs=96.3

Q ss_pred             eecceEEEee---cCCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcc
Q 036281          111 PYDGIFCLLK---SHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFS  187 (371)
Q Consensus       111 s~~GLl~~~~---~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~  187 (371)
                      ..+|-+.+..   ...+ .++|+..+....+.....         ....++.+++.. .  ++...   .       ...
T Consensus        86 ~~~g~l~v~~~~~~~~i-~~~d~~g~~~~~~~~~~~---------~~~~~i~~~~~g-~--l~v~~---~-------~~~  142 (286)
T 1q7f_A           86 RNSGDIIVTERSPTHQI-QIYNQYGQFVRKFGATIL---------QHPRGVTVDNKG-R--IIVVE---C-------KVM  142 (286)
T ss_dssp             TTTTEEEEEECGGGCEE-EEECTTSCEEEEECTTTC---------SCEEEEEECTTS-C--EEEEE---T-------TTT
T ss_pred             cCCCeEEEEcCCCCCEE-EEECCCCcEEEEecCccC---------CCceEEEEeCCC-C--EEEEE---C-------CCC
Confidence            3567666665   3455 889965554444433221         112566677643 2  22221   0       134


Q ss_pred             eEEEEEcCCCceeecCccccccceeccccceEEE--CceEEEEEecCCCCcEEEEEECCCceEEEeCCCCCCCCCccccc
Q 036281          188 HVAVYNFSTNSWRDLKGFEMRFDYMVDRIYNVYL--NGYCYWVVCRPDYSKAILAFSMSNEVFQEIKGPSVPQTTTYYQS  265 (371)
Q Consensus       188 ~~~vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~~~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~  265 (371)
                      .+.+|+..+..-+..... ....    ...++.+  +|.+|.....   ...|..||...+....+..+....       
T Consensus       143 ~i~~~~~~g~~~~~~~~~-~~~~----~p~~i~~~~~g~l~v~~~~---~~~i~~~~~~g~~~~~~~~~g~~~-------  207 (286)
T 1q7f_A          143 RVIIFDQNGNVLHKFGCS-KHLE----FPNGVVVNDKQEIFISDNR---AHCVKVFNYEGQYLRQIGGEGITN-------  207 (286)
T ss_dssp             EEEEECTTSCEEEEEECT-TTCS----SEEEEEECSSSEEEEEEGG---GTEEEEEETTCCEEEEESCTTTSC-------
T ss_pred             EEEEEcCCCCEEEEeCCC-CccC----CcEEEEECCCCCEEEEECC---CCEEEEEcCCCCEEEEEccCCccC-------
Confidence            566777554433322110 0110    1123444  4786654432   358999999777666664432111       


Q ss_pred             CCCcceEEE-eCCeEEEEecCCCCC-EEEEEEeeCCceeEEEEecCCCcceeeeEEeeCCEEEEEEcCCeEEEEeCCC
Q 036281          266 VKTPWMLGT-YDDCLSLLYSDKFAH-SFELWIMKGGFWIKHLTFGPFIETYQPLGFWRKDEFLLESSDKRVILYDSRY  341 (371)
Q Consensus       266 ~~~~~~L~~-~~g~L~l~~~~~~~~-~~~iW~L~~~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~  341 (371)
                        ....+.. -+|.|.+...  ... .+.+|-.+. .-..............-+++..+|.+++...++.+.+|+...
T Consensus       208 --~p~~i~~d~~G~l~v~~~--~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          208 --YPIGVGINSNGEILIADN--HNNFNLTIFTQDG-QLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             --SEEEEEECTTCCEEEEEC--SSSCEEEEECTTS-CEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred             --CCcEEEECCCCCEEEEeC--CCCEEEEEECCCC-CEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence              1223443 4688777652  333 788886432 222222221111112345666789988887777899998754

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=81.40  E-value=25  Score=30.14  Aligned_cols=195  Identities=9%  Similarity=0.068  Sum_probs=95.2

Q ss_pred             cceEEEee--cCCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEE
Q 036281          113 DGIFCLLK--SHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVA  190 (371)
Q Consensus       113 ~GLl~~~~--~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~  190 (371)
                      +|-|.+.+  ...+ +.+||.+++...+..+.         .  ..++.+++..+ + ++..             ...+.
T Consensus        24 ~~~l~~~d~~~~~i-~~~d~~~~~~~~~~~~~---------~--~~~i~~~~dG~-l-~v~~-------------~~~l~   76 (297)
T 3g4e_A           24 SNSLLFVDIPAKKV-CRWDSFTKQVQRVTMDA---------P--VSSVALRQSGG-Y-VATI-------------GTKFC   76 (297)
T ss_dssp             TTEEEEEETTTTEE-EEEETTTCCEEEEECSS---------C--EEEEEEBTTSS-E-EEEE-------------TTEEE
T ss_pred             CCEEEEEECCCCEE-EEEECCCCcEEEEeCCC---------c--eEEEEECCCCC-E-EEEE-------------CCeEE
Confidence            45554444  3455 99999998765443222         1  14566665443 2 2221             23578


Q ss_pred             EEEcCCCceeecCccccccceeccccceEEE--CceEEEEEecC--------CCCcEEEEEECCCceEEEeCCCCCCCCC
Q 036281          191 VYNFSTNSWRDLKGFEMRFDYMVDRIYNVYL--NGYCYWVVCRP--------DYSKAILAFSMSNEVFQEIKGPSVPQTT  260 (371)
Q Consensus       191 vy~~~~~~Wr~~~~~~~~~~~~~~~~~~v~~--~G~lywl~~~~--------~~~~~Il~fD~~~e~~~~i~~P~~~~~~  260 (371)
                      +|+..++.++.+.......+..  ....+.+  +|.+|+-....        .....|..+|.... ...+.  ....  
T Consensus        77 ~~d~~~g~~~~~~~~~~~~~~~--~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~--~~~~--  149 (297)
T 3g4e_A           77 ALNWKEQSAVVLATVDNDKKNN--RFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYF--DQVD--  149 (297)
T ss_dssp             EEETTTTEEEEEEECCTTCSSE--EEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEE--EEES--
T ss_pred             EEECCCCcEEEEEecCCCCCCC--CCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEe--eccc--
Confidence            8888888877654221111111  1122333  58866544321        01346788877532 22211  0000  


Q ss_pred             cccccCCCcceEEE-eCCe-EEEEecCCCCCEEEEEEee-C-CceeEE---EEecCCCcceeeeEEeeCCEEEEEE-cCC
Q 036281          261 TYYQSVKTPWMLGT-YDDC-LSLLYSDKFAHSFELWIMK-G-GFWIKH---LTFGPFIETYQPLGFWRKDEFLLES-SDK  332 (371)
Q Consensus       261 ~~~~~~~~~~~L~~-~~g~-L~l~~~~~~~~~~~iW~L~-~-~~W~~~---~~i~~~~~~~~~~~~~~~~~il~~~-~~~  332 (371)
                             ..-.+.. -+|+ |++..  .....+.+|-++ + ......   ..+........-+++..+|.|++.. ..+
T Consensus       150 -------~pngi~~spdg~~lyv~~--~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~  220 (297)
T 3g4e_A          150 -------ISNGLDWSLDHKIFYYID--SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGG  220 (297)
T ss_dssp             -------BEEEEEECTTSCEEEEEE--GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTT
T ss_pred             -------cccceEEcCCCCEEEEec--CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCC
Confidence                   0111222 2454 44443  234566666654 2 332211   1111111122234556688888875 456


Q ss_pred             eEEEEeCCCCe-EEEEEEe
Q 036281          333 RVILYDSRYHE-MRDLGIT  350 (371)
Q Consensus       333 ~l~~yd~~~~~-~~~v~~~  350 (371)
                      .+..||+++++ +..+...
T Consensus       221 ~v~~~d~~tG~~~~~i~~p  239 (297)
T 3g4e_A          221 RVIRLDPVTGKRLQTVKLP  239 (297)
T ss_dssp             EEEEECTTTCCEEEEEECS
T ss_pred             EEEEEcCCCceEEEEEECC
Confidence            79999999665 4566554

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=81.22  E-value=12  Score=32.73  Aligned_cols=103  Identities=10%  Similarity=-0.011  Sum_probs=57.5

Q ss_pred             cEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEE-EeCCeEEEEecCCCCCEEEEEEeeCCceeEEEEecCCCcce
Q 036281          236 KAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLG-TYDDCLSLLYSDKFAHSFELWIMKGGFWIKHLTFGPFIETY  314 (371)
Q Consensus       236 ~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~-~~~g~L~l~~~~~~~~~~~iW~L~~~~W~~~~~i~~~~~~~  314 (371)
                      ..+..+|..+.++..+........         ...+. .-+|+|++.........+.+|-++...+.....+.....-.
T Consensus        18 i~v~~~d~~tg~~~~~~~~~~~~~---------p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p   88 (347)
T 3hfq_A           18 IYQGTLDTTAKTLTNDGLLAATQN---------PTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPP   88 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECSC---------CCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCC
T ss_pred             EEEEEEcCCCCeEEEeeeeeccCC---------cceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCC
Confidence            457788888888776543221111         11233 24788555442233578899998765555554432221112


Q ss_pred             eeeEEeeCCEE-EEEE-cCCeEEEEeCC-CCeEEEE
Q 036281          315 QPLGFWRKDEF-LLES-SDKRVILYDSR-YHEMRDL  347 (371)
Q Consensus       315 ~~~~~~~~~~i-l~~~-~~~~l~~yd~~-~~~~~~v  347 (371)
                      .-+++.++|+. ++.. .++.+.+||+. +++.+.+
T Consensus        89 ~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~  124 (347)
T 3hfq_A           89 AYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLT  124 (347)
T ss_dssp             SEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeec
Confidence            23566778874 4444 45779999985 4455444

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=80.70  E-value=30  Score=30.65  Aligned_cols=112  Identities=12%  Similarity=-0.006  Sum_probs=59.7

Q ss_pred             cceEEECceEEEEEecCCCCcEEEEEECCCce--EEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEecCCCCCEEEE
Q 036281          216 IYNVYLNGYCYWVVCRPDYSKAILAFSMSNEV--FQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLYSDKFAHSFEL  293 (371)
Q Consensus       216 ~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~--~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~~~~~~~~~i  293 (371)
                      ..++..+|.+|.-...+    .|.+||..+.+  |+. +++.....           .....+|.+.+..   ....+..
T Consensus        97 ~~~~~~~~~v~v~~~~g----~l~a~d~~tG~~~W~~-~~~~~~~~-----------~p~~~~~~v~v~~---~~g~l~~  157 (376)
T 3q7m_A           97 GGVTVSGGHVYIGSEKA----QVYALNTSDGTVAWQT-KVAGEALS-----------RPVVSDGLVLIHT---SNGQLQA  157 (376)
T ss_dssp             EEEEEETTEEEEEETTS----EEEEEETTTCCEEEEE-ECSSCCCS-----------CCEEETTEEEEEC---TTSEEEE
T ss_pred             cCceEeCCEEEEEcCCC----EEEEEECCCCCEEEEE-eCCCceEc-----------CCEEECCEEEEEc---CCCeEEE
Confidence            35567788888766554    89999997654  433 33332211           1123456555533   1222222


Q ss_pred             EEeeC--CceeEEEEecCC--CcceeeeEEeeCCEEEEEEcCCeEEEEeCCCCeEEEEE
Q 036281          294 WIMKG--GFWIKHLTFGPF--IETYQPLGFWRKDEFLLESSDKRVILYDSRYHEMRDLG  348 (371)
Q Consensus       294 W~L~~--~~W~~~~~i~~~--~~~~~~~~~~~~~~il~~~~~~~l~~yd~~~~~~~~v~  348 (371)
                      +-.+.  ..|.....-...  .....|..  .++.+++...++.++.+|+++++..+-.
T Consensus       158 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~  214 (376)
T 3q7m_A          158 LNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQ  214 (376)
T ss_dssp             EETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEE
T ss_pred             EECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            22222  345443211111  01123332  2677777767788999999999876653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	371
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	2e-06
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	3e-04
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	0.002

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (99), Expect = 2e-06
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 12 DLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNF 49
           L D++++   S L +  L++   VC  W  L  D + 
Sbjct: 3  SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (86), Expect = 3e-04
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 10 LGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRD 57
          +  L  ++ +  LS L  K L++    C  W  L +D     +  K +
Sbjct: 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE 66

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 12 DLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKR 56
             D +    LS L  KSL   + VC  W  +  D     K ++R
Sbjct: 17 RGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIER 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	371
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.17
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.62
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.39
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.35
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.16
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.1
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.58
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.57
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	86.01
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	83.57

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.6e-12  Score=77.18  Aligned_cols=40  Identities=25%  Similarity=0.567  Sum_probs=37.4

Q ss_pred             CCCCCHHHHHHHHhcCCccccceeeecccchhhhcCChHH
Q 036281           10 LGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNF   49 (371)
Q Consensus        10 ~~~LP~dll~~IL~rLP~ksl~r~r~VcK~W~~li~~p~F   49 (371)
                      ++.||+|++.+||++||++++.|+++|||+|+.+++++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            4679999999999999999999999999999999998864

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=3.3e-09  Score=77.68  Aligned_cols=50  Identities=22%  Similarity=0.304  Sum_probs=45.3

Q ss_pred             ccCCCCCHHHHHHHHhcCCccccceeeecccchhhhcCChHHHHHHhccC
Q 036281            8 KTLGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLKRD   57 (371)
Q Consensus         8 ~~~~~LP~dll~~IL~rLP~ksl~r~r~VcK~W~~li~~p~F~~~~~~~~   57 (371)
                      ..++.||+||+.+||+.||+++|+++.+|||+|+.++.++.+-+.+..+.
T Consensus        17 D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~   66 (102)
T d2ovrb1          17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE   66 (102)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTT
T ss_pred             CChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            34678999999999999999999999999999999999999988776554

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=8.4e-05  Score=63.47  Aligned_cols=194  Identities=10%  Similarity=0.033  Sum_probs=115.4

Q ss_pred             CceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeec
Q 036281          123 TLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDL  202 (371)
Q Consensus       123 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~  202 (371)
                      .+ .++||.|++|..+|+.+..+  .   .   .+....    +-|++.+.....     .......++|+..++.|...
T Consensus        71 ~~-~~yd~~~~~w~~~~~~p~~r--~---~---~~~~~~----~~~i~~~gg~~~-----~~~~~~~~~~~~~~~~~~~~  132 (288)
T d1zgka1          71 AL-DCYNPMTNQWSPCAPMSVPR--N---R---IGVGVI----DGHIYAVGGSHG-----CIHHNSVERYEPERDEWHLV  132 (288)
T ss_dssp             CE-EEEETTTTEEEECCCCSSCC--B---T---CEEEEE----TTEEEEECCEET-----TEECCCEEEEETTTTEEEEC
T ss_pred             hh-hhccccccccccccccccee--c---c---eecccc----ceeeEEecceec-----ccccceeeeeccccCccccc
Confidence            45 99999999999999876432  1   1   111111    124444433221     12255689999999999988


Q ss_pred             CccccccceeccccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEEeCCeEE
Q 036281          203 KGFEMRFDYMVDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLS  280 (371)
Q Consensus       203 ~~~~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~  280 (371)
                      +..    +........+..++.+|-+.....  ....+..||+.+++|.....+....         ........++++.
T Consensus       133 ~~~----~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~i~  199 (288)
T d1zgka1         133 APM----LTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIR---------SGAGVCVLHNCIY  199 (288)
T ss_dssp             CCC----SSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCC---------BSCEEEEETTEEE
T ss_pred             ccc----ccccccceeeeeeecceEecCcccccccceEEEeecccccccccccccccc---------ccccccceeeeEE
Confidence            643    211123455677888776654321  2456899999999999876544322         2345667888888


Q ss_pred             EEec-CCCCCEEEEEEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEEc------CCeEEEEeCCCCeEEEEEE
Q 036281          281 LLYS-DKFAHSFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESS------DKRVILYDSRYHEMRDLGI  349 (371)
Q Consensus       281 l~~~-~~~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~~~~~~~v~~  349 (371)
                      ++.- ......-..|..+-  ..|...-.. |.+....-.. .-+++|++...      ...+..||+++++|+.+.-
T Consensus       200 i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~  275 (288)
T d1zgka1         200 AAGGYDGQDQLNSVERYDVETETWTFVAPM-KHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTR  275 (288)
T ss_dssp             EECCBCSSSBCCCEEEEETTTTEEEECCCC-SSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE
T ss_pred             EecCccccccccceeeeeecceeeecccCc-cCcccceEEE-EECCEEEEEecCCCCeecceEEEEECCCCEEEECCC
Confidence            8652 12222234455443  566554321 2222222223 33778888632      2458999999999999954

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.35  E-value=4.2e-08  Score=71.22  Aligned_cols=42  Identities=10%  Similarity=0.305  Sum_probs=37.3

Q ss_pred             CCCCCHHHHHHHHhcCCccccceeeecccchhhhcC-ChHHHH
Q 036281           10 LGDLSDDMMIETLSRLPVKSLMRFKCVCISWCDLVK-DPNFIY   51 (371)
Q Consensus        10 ~~~LP~dll~~IL~rLP~ksl~r~r~VcK~W~~li~-~p~F~~   51 (371)
                      ++.||+||+.+||+.|++++|+++..|||+|+.+++ ++..-+
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr   48 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWK   48 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHH
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            457999999999999999999999999999999985 566544

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=4.3e-05  Score=65.39  Aligned_cols=195  Identities=14%  Similarity=0.041  Sum_probs=112.4

Q ss_pred             EEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcceEEEEEcCCCceeecCcc
Q 036281          126 NLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFSHVAVYNFSTNSWRDLKGF  205 (371)
Q Consensus       126 ~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~vy~~~~~~Wr~~~~~  205 (371)
                      .++||.|++|..+|+.+..+  .   .   .+....   ++ +++.+....... .+......+++|+..+++|+.++..
T Consensus        22 ~~yd~~t~~W~~~~~~p~~R--~---~---~~~~~~---~~-~iyv~GG~~~~~-~~~~~~~~~~~yd~~~~~w~~~~~~   88 (288)
T d1zgka1          22 EAYNPSNGTWLRLADLQVPR--S---G---LAGCVV---GG-LLYAVGGRNNSP-DGNTDSSALDCYNPMTNQWSPCAPM   88 (288)
T ss_dssp             EEEETTTTEEEECCCCSSCC--B---S---CEEEEE---TT-EEEEECCEEEET-TEEEECCCEEEEETTTTEEEECCCC
T ss_pred             EEEECCCCeEEECCCCCCcc--c---e---eEEEEE---CC-EEEEEeCcccCC-CCccccchhhhcccccccccccccc
Confidence            89999999999998776421  1   1   111111   12 455554321110 0112246789999999999998743


Q ss_pred             ccccceeccccceEEECceEEEEEecCC--CCcEEEEEECCCceEEEeCCCCCCCCCcccccCCCcceEEEeCCeEEEEe
Q 036281          206 EMRFDYMVDRIYNVYLNGYCYWVVCRPD--YSKAILAFSMSNEVFQEIKGPSVPQTTTYYQSVKTPWMLGTYDDCLSLLY  283 (371)
Q Consensus       206 ~~~~~~~~~~~~~v~~~G~lywl~~~~~--~~~~Il~fD~~~e~~~~i~~P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~  283 (371)
                          +.......++.++|++|.+.....  .......+|..+++|...+.+....         .....+..++++.++.
T Consensus        89 ----p~~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r---------~~~~~~~~~~~~~~~G  155 (288)
T d1zgka1          89 ----SVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRR---------IGVGVAVLNRLLYAVG  155 (288)
T ss_dssp             ----SSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCC---------BSCEEEEETTEEEEEC
T ss_pred             ----cceecceeccccceeeEEecceecccccceeeeeccccCcccccccccccc---------ccceeeeeeecceEec
Confidence                322224466888999998754321  2345778999999998765433221         2344566788888854


Q ss_pred             c-CCCCCEEEEEEeeC--CceeEEEEecCCCcceeeeEEeeCCEEEEEEc------CCeEEEEeCCCCeEEEEE
Q 036281          284 S-DKFAHSFELWIMKG--GFWIKHLTFGPFIETYQPLGFWRKDEFLLESS------DKRVILYDSRYHEMRDLG  348 (371)
Q Consensus       284 ~-~~~~~~~~iW~L~~--~~W~~~~~i~~~~~~~~~~~~~~~~~il~~~~------~~~l~~yd~~~~~~~~v~  348 (371)
                      . ......-++|.++.  ..|...... +......... ..++.|++...      ......||..+++|+.+.
T Consensus       156 G~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~-~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~  227 (288)
T d1zgka1         156 GFDGTNRLNSAECYYPERNEWRMITAM-NTIRSGAGVC-VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  227 (288)
T ss_dssp             CBCSSCBCCCEEEEETTTTEEEECCCC-SSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             CcccccccceEEEeecccccccccccc-cccccccccc-ceeeeEEEecCccccccccceeeeeecceeeeccc
Confidence            2 11122223444443  556543321 2221122223 33567766531      246899999999999874

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.5e-07  Score=70.53  Aligned_cols=45  Identities=29%  Similarity=0.395  Sum_probs=39.5

Q ss_pred             CCCC----HHHHHHHHhcCCccccceeeecccchhhhcCChHHHHHHhc
Q 036281           11 GDLS----DDMMIETLSRLPVKSLMRFKCVCISWCDLVKDPNFIYKHLK   55 (371)
Q Consensus        11 ~~LP----~dll~~IL~rLP~ksl~r~r~VcK~W~~li~~p~F~~~~~~   55 (371)
                      +.||    |||+..||+.|++++|+++.+|||+|+.+++++.+-+....
T Consensus        12 ~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~   60 (118)
T d1p22a1          12 TALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIE   60 (118)
T ss_dssp             HHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHH
T ss_pred             HHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            4466    69999999999999999999999999999999888776543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.58  E-value=0.00033  Score=62.33  Aligned_cols=196  Identities=12%  Similarity=0.002  Sum_probs=110.3

Q ss_pred             eccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCC-CCCCCcceEEEEEcCCCceeecCcccc
Q 036281          129 NVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQR-DSFHDFSHVAVYNFSTNSWRDLKGFEM  207 (371)
Q Consensus       129 NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~-~~~~~~~~~~vy~~~~~~Wr~~~~~~~  207 (371)
                      .|.+++|..+++.+..       .   .+.+..+..  =||+.+........ ........+++|+..+++|+.....  
T Consensus         5 ~p~~g~W~~~~~~p~~-------~---~~~a~~~~~--gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~--   70 (387)
T d1k3ia3           5 QPGLGRWGPTIDLPIV-------P---AAAAIEPTS--GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT--   70 (387)
T ss_dssp             CTTSCEEEEEEECSSC-------C---SEEEEETTT--TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE--
T ss_pred             CCCCCccCCcCCCCcc-------c---cEEEEEeeC--CEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCC--
Confidence            5888888876655532       1   111222222  36766654222111 1122345689999999999877532  


Q ss_pred             ccceecc-ccceEEECceEEEEEecCCCCcEEEEEECCCceEEEeCC-CCCCCCCcccccCCCcceEEEeCCeEEEEec-
Q 036281          208 RFDYMVD-RIYNVYLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIKG-PSVPQTTTYYQSVKTPWMLGTYDDCLSLLYS-  284 (371)
Q Consensus       208 ~~~~~~~-~~~~v~~~G~lywl~~~~~~~~~Il~fD~~~e~~~~i~~-P~~~~~~~~~~~~~~~~~L~~~~g~L~l~~~-  284 (371)
                      ..+.... ....+..+|.+|.....+  ...+-.||+.+++|+.+.. |....         ........+|++.++.- 
T Consensus        71 ~~~~~~~~~~~~~~~~g~i~v~Gg~~--~~~~~~yd~~~~~w~~~~~~~~~r~---------~~~~~~~~dG~v~v~GG~  139 (387)
T d1k3ia3          71 VTKHDMFCPGISMDGNGQIVVTGGND--AKKTSLYDSSSDSWIPGPDMQVARG---------YQSSATMSDGRVFTIGGS  139 (387)
T ss_dssp             ECSCCCSSCEEEECTTSCEEEECSSS--TTCEEEEEGGGTEEEECCCCSSCCS---------SCEEEECTTSCEEEECCC
T ss_pred             CCCcccceeEEEEecCCcEEEeecCC--CcceeEecCccCccccccccccccc---------ccceeeecCCceeeeccc
Confidence            2222111 223455689998877544  4568899999999998643 22211         12223335789888652 


Q ss_pred             ---CCCCCEEEEEEeeCCceeEEEEecCCC-------cc----eee-eEEeeCCEEEEEE-cCCeEEEEeCCCCeEEEEE
Q 036281          285 ---DKFAHSFELWIMKGGFWIKHLTFGPFI-------ET----YQP-LGFWRKDEFLLES-SDKRVILYDSRYHEMRDLG  348 (371)
Q Consensus       285 ---~~~~~~~~iW~L~~~~W~~~~~i~~~~-------~~----~~~-~~~~~~~~il~~~-~~~~l~~yd~~~~~~~~v~  348 (371)
                         ......+++|-.....|...-.+....       ..    ..+ +....+|+++... .......||.++..|....
T Consensus       140 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~  219 (387)
T d1k3ia3         140 WSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAG  219 (387)
T ss_dssp             CCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEE
T ss_pred             cccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeecc
Confidence               122345677766668897654332110       00    112 2233466766553 3456889999999998775


Q ss_pred             E
Q 036281          349 I  349 (371)
Q Consensus       349 ~  349 (371)
                      .
T Consensus       220 ~  220 (387)
T d1k3ia3         220 K  220 (387)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.57  E-value=0.00067  Score=60.21  Aligned_cols=219  Identities=10%  Similarity=0.036  Sum_probs=112.4

Q ss_pred             eecceEEEee---cCCceEEEeccccccccCCCCCCCCCCCCCCceeeEEEeccCCCCCeEEEEEeeEecCCCCCCCCcc
Q 036281          111 PYDGIFCLLK---SHTLINLWNVSLNEYRGLPECRPRLPCYTRTHYANIALGLDLVTGDFKLVLILTLWNDQRDSFHDFS  187 (371)
Q Consensus       111 s~~GLl~~~~---~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~  187 (371)
                      ..+|.+.+.-   .... .++||.|++|..+|..+..+-      ......-.     +-+|+.+......    .....
T Consensus        84 ~~~g~i~v~Gg~~~~~~-~~yd~~~~~w~~~~~~~~~r~------~~~~~~~~-----dG~v~v~GG~~~~----~~~~~  147 (387)
T d1k3ia3          84 DGNGQIVVTGGNDAKKT-SLYDSSSDSWIPGPDMQVARG------YQSSATMS-----DGRVFTIGGSWSG----GVFEK  147 (387)
T ss_dssp             CTTSCEEEECSSSTTCE-EEEEGGGTEEEECCCCSSCCS------SCEEEECT-----TSCEEEECCCCCS----SSCCC
T ss_pred             ecCCcEEEeecCCCcce-eEecCccCccccccccccccc------ccceeeec-----CCceeeecccccc----ccccc
Confidence            3477666553   2455 999999999999998775321      11111111     1234444322111    22356


Q ss_pred             eEEEEEcCCCceeecCccccccceecc-------ccceE---EECceEEEEEecCCCCcEEEEEECCCceEEEeC-CCCC
Q 036281          188 HVAVYNFSTNSWRDLKGFEMRFDYMVD-------RIYNV---YLNGYCYWVVCRPDYSKAILAFSMSNEVFQEIK-GPSV  256 (371)
Q Consensus       188 ~~~vy~~~~~~Wr~~~~~~~~~~~~~~-------~~~~v---~~~G~lywl~~~~~~~~~Il~fD~~~e~~~~i~-~P~~  256 (371)
                      .+++|+..+++|..++...........       .....   ..+|.+|.....   ...+..+|..+..|.... .|..
T Consensus       148 ~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~  224 (387)
T d1k3ia3         148 NGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPS---TAMNWYYTSGSGDVKSAGKRQSN  224 (387)
T ss_dssp             CEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSS---SEEEEEECSTTCEEEEEEECEET
T ss_pred             eeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCc---CCcEEecCcccCcEeeccccccC
Confidence            789999999999988644211111100       11111   124666554332   346778999999887653 2221


Q ss_pred             CCCCcccccCCCcceEEEeCCeEEEEecC------CCCCEEEEEEeeC--CceeEEEEec--CCCcceeeeEEeeCCEEE
Q 036281          257 PQTTTYYQSVKTPWMLGTYDDCLSLLYSD------KFAHSFELWIMKG--GFWIKHLTFG--PFIETYQPLGFWRKDEFL  326 (371)
Q Consensus       257 ~~~~~~~~~~~~~~~L~~~~g~L~l~~~~------~~~~~~~iW~L~~--~~W~~~~~i~--~~~~~~~~~~~~~~~~il  326 (371)
                      ....... .......+...+|++.++.-.      .......+..+..  ..|.....+.  |.+.......+..||+|+
T Consensus       225 ~~~~~~~-~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~  303 (387)
T d1k3ia3         225 RGVAPDA-MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTF  303 (387)
T ss_dssp             TEECCCC-BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEE
T ss_pred             cccCccc-ccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEE
Confidence            1110000 001122233357888775421      1122344444444  2333333333  223333444445678888


Q ss_pred             EEEc--------C----CeEEEEeCCCCeEEEEEE
Q 036281          327 LESS--------D----KRVILYDSRYHEMRDLGI  349 (371)
Q Consensus       327 ~~~~--------~----~~l~~yd~~~~~~~~v~~  349 (371)
                      +...        +    ..+.+||+++++|+.+.-
T Consensus       304 v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~  338 (387)
T d1k3ia3         304 ITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNP  338 (387)
T ss_dssp             EECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCC
T ss_pred             EECCcccCccCCCCcEeceEEEEECCCCeEEECCC
Confidence            7632        0    136789999999998843

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=86.01  E-value=7.7  Score=31.61  Aligned_cols=35  Identities=11%  Similarity=0.074  Sum_probs=28.6

Q ss_pred             eEEeeCCEEEEEE-cCCeEEEEeCCCCeEEEEEEec
Q 036281          317 LGFWRKDEFLLES-SDKRVILYDSRYHEMRDLGITG  351 (371)
Q Consensus       317 ~~~~~~~~il~~~-~~~~l~~yd~~~~~~~~v~~~~  351 (371)
                      +++..+|.|++.. ..++|..||++.+.++++.++.
T Consensus       204 ~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~  239 (295)
T d2ghsa1         204 SVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPG  239 (295)
T ss_dssp             EEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSC
T ss_pred             eEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCCC
Confidence            4556688898885 4678999999999999998864

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.57  E-value=7.2  Score=33.74  Aligned_cols=112  Identities=11%  Similarity=0.133  Sum_probs=64.3

Q ss_pred             ECceEEEEEecCCCCcEEEEEECCC---ceEEEeCCCCCCCCCcccccCCCcceEE-EeCCeEEEEecCCCCCEEEEEEe
Q 036281          221 LNGYCYWVVCRPDYSKAILAFSMSN---EVFQEIKGPSVPQTTTYYQSVKTPWMLG-TYDDCLSLLYSDKFAHSFELWIM  296 (371)
Q Consensus       221 ~~G~lywl~~~~~~~~~Il~fD~~~---e~~~~i~~P~~~~~~~~~~~~~~~~~L~-~~~g~L~l~~~~~~~~~~~iW~L  296 (371)
                      .++.+|.++..+.....|++.++.+   ..|+.+-.+....         ...... ..++.|.+.........+.++-+
T Consensus       296 ~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~---------~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~  366 (430)
T d1qfma1         296 EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD---------VLEWVACVRSNFLVLCYLHDVKNTLQLHDL  366 (430)
T ss_dssp             ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSC---------EEEEEEEETTTEEEEEEEETTEEEEEEEET
T ss_pred             CCceeecccCcccccceeEEecCCCCccccceEEecccCcc---------eeeeEEEEECCEEEEEEEcCCEeEEEEEEC
Confidence            4567777776554568899999875   4566553222211         112223 34678877554456667777777


Q ss_pred             eCCceeEEEEecCCCcceeeeEEe---eCCEEEEEEc----CCeEEEEeCCCCeEE
Q 036281          297 KGGFWIKHLTFGPFIETYQPLGFW---RKDEFLLESS----DKRVILYDSRYHEMR  345 (371)
Q Consensus       297 ~~~~W~~~~~i~~~~~~~~~~~~~---~~~~il~~~~----~~~l~~yd~~~~~~~  345 (371)
                      +...|...   .+.+ .....++.   .++++.+...    ...++.||++|++++
T Consensus       367 ~~~~~~~~---~~~~-~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~  418 (430)
T d1qfma1         367 ATGALLKI---FPLE-VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELE  418 (430)
T ss_dssp             TTCCEEEE---ECCC-SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCC
T ss_pred             CCCcEEEe---cCCC-CceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcc
Confidence            66666443   2222 12222222   2556776642    468999999998653