Citrus Sinensis ID: 036286

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
MPSRLSDAFRAHPVFHQHKHLDFTSLQELPDSYAWTQRDEYPIGDSLISESVPVIDLNDPNALTLVGNACKTWGAFQVINHGIPTNLLDNTESTSRSLFSLPTQQKLKAARSPDGVAGYGLARISSFFSKLMWSEGFTVAGSPLDHFRKLWPQDFCKHCDIIEEYEQEMKKLAGRLMWLVLGSLGITTQDVKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLTILYQNNTSGLQVLKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRLSIAYLYGPPSSVQISPLQKLVGPSHPPLYRPITWSEYLDTKAKHFNKALSSVKSLLS
cccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHcccccccEEEEEccccccccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccccccccccccccccccccccccccccccccccccccccEEEEEcccccEEEEEccccEEEcccccccEEEEEccEEEEEEcccccccccEEEEcccccEEEEEEEEccccccEEEccccccccccccccccccHHHHHHHHHHHHHcccccHHHccc
ccccHHHHHccccccccHHHHHHcccccccHHcccccccccccccccccccccEEEcccHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEEEcccccccccHHHEEEEEcccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccEEEEEccccccccccEccccccccccEEEEEEccccccEEEEEcccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEEcccccEEcccHHHcccccccccccccHHHHHHHHHHHcccHHHHHHHHcc
mpsrlsdafrahpvfhqhkhldftslqelpdsyawtqrdeypigdslisesvpvidlndpnaltLVGNACKtwgafqvinhgiptnlldntestsrslfslptqqklkaarspdgvagyGLARISSFFSKLMwsegftvagspldhfrklwpqdfckHCDIIEEYEQEMKKLAGRLMWLVLGSlgittqdvkwagpkghftdASAALQlnyypacpdpdramglaehtdSTLLTILYQNNTsglqvlkegtgwvmvppipgalvVNVGDLIHilsngsypsvLHRAVVNRAKHRLSIAylygppssvqisplqklvgpshpplyrpitwseYLDTKAKHFNKALSSVKSLLS
MPSRLSDAFRAHPVFHQHKHLDFTSLQELPDSYAWTQRDEYPIGDSLISESVPVIDLNDPNALTLVGNACKTWGAFQVINHGIPTNLLDNTESTSRSLFSlptqqklkaarspdgvagYGLARISSFFSKLMWSEGFTVAGSPLDHFRKLWPQDFCKHCDIIEEYEQEMKKLAGRLMWLVLGSLGITTQDVKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLTILYQNNTSGLQVLKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRLSIAYLYGPPSSVQISPLQKLVGPSHPPLYRPITWSEYLDTKAKHFNKALssvkslls
MPSRLSDAFRAHPVFHQHKHLDFTSLQELPDSYAWTQRDEYPIGDSLISESVPVIDLNDPNALTLVGNACKTWGAFQVINHGIPTNLLDNTESTSRSLFSLPTQQKLKAARSPDGVAGYGLARISSFFSKLMWSEGFTVAGSPLDHFRKLWPQDFCKHCDIIEEYEQEMKKLAGRLMWLVLGSLGITTQDVKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLTILYQNNTSGLQVLKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRLSIAYLYGPPSSVQISPLQKLVGPSHPPLYRPITWSEYLDTKAKHFNKALSSVKSLLS
***********HPVFHQHKHLDFTSLQELPDSYAWTQRDEYPIGDSLISESVPVIDLNDPNALTLVGNACKTWGAFQVINHGIPTNLLD*************************GVAGYGLARISSFFSKLMWSEGFTVAGSPLDHFRKLWPQDFCKHCDIIEEYEQEMKKLAGRLMWLVLGSLGITTQDVKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLTILYQNNTSGLQVLKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRLSIAYLYGPPSSVQISPLQKLVGPSHPPLYRPITWSEYLDTKAKHF************
**************************QELPDSYAWT*************ESVPVIDLNDPNALTLVGNACKTWGAFQVINHGIPTNLLDNTESTSRSLFSLPTQQKL***RSPDGVAGYGLARISSFFSKLMWSEGFTVAGSPLDHFRKLWPQDFCKHCDIIEEYEQEMKKLAGRLMWLVLGSLGITTQDVKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLTILYQNNTSGLQVLKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRLSIAYLYGPPSSVQISPLQKLVGPSHPPLYRPITWSEYLDTKAKHFNKALSSVKSLL*
MPSRLSDAFRAHPVFHQHKHLDFTSLQELPDSYAWTQRDEYPIGDSLISESVPVIDLNDPNALTLVGNACKTWGAFQVINHGIPTNLLDNTESTSRSLFSLPTQQKLKAARSPDGVAGYGLARISSFFSKLMWSEGFTVAGSPLDHFRKLWPQDFCKHCDIIEEYEQEMKKLAGRLMWLVLGSLGITTQDVKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLTILYQNNTSGLQVLKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRLSIAYLYGPPSSVQISPLQKLVGPSHPPLYRPITWSEYLDTKAKHFNKA*********
**********AHPVFHQHKHLDFTSLQELPDSYAWTQRDEYPIGDSLISESVPVIDLNDPNALTLVGNACKTWGAFQVINHGIPTNLLDNTESTSRSLFSLPTQQKLKAARSPDGVAGYGLARISSFFSKLMWSEGFTVAGSPLDHFRKLWPQDFCKHCDIIEEYEQEMKKLAGRLMWLVLGSLGITTQDVKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLTILYQNNTSGLQVLKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRLSIAYLYGPPSSVQISPLQKLVGPSHPPLYRPITWSEYLDTKAKHFNKALSSVK**L*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MPSRLSDAFRAHPVFHQHKHLDFTSLQELPDSYAWTQRDEYPIGDSLISESVPVIDLNDPNALTLVGNACKTWGAFQVINHGIPTNLLDNTESTSRSLFSLPTQQKLKAARSPDGVAGYGLARISSFFSKLMWSEGFTVAGSPLDHFRKLWPQDFCKHCDIIEEYEQEMKKLAGRLMWLVLGSLGITTQDVKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLTILYQNNTSGLQVLKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRLSIAYLYGPPSSVQISPLQKLVGPSHPPLYRPITWSEYLDTKAKHFNKALSSVKSLLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query352 2.2.26 [Sep-21-2011]
Q39103358 Gibberellin 3-beta-dioxyg yes no 0.991 0.974 0.601 1e-127
Q9ZT84347 Gibberellin 3-beta-dioxyg no no 0.977 0.991 0.593 1e-118
Q9C971355 Gibberellin 3-beta-dioxyg no no 0.928 0.921 0.541 1e-104
Q9SVS8349 Gibberellin 3-beta-dioxyg no no 0.954 0.962 0.475 4e-87
Q3I409369 Gibberellin 3-beta-dioxyg N/A no 0.931 0.888 0.415 7e-76
Q3I410370 Gibberellin 3-beta-dioxyg N/A no 0.934 0.889 0.411 5e-73
Q3I411370 Gibberellin 3-beta-dioxyg N/A no 0.934 0.889 0.411 7e-73
D4N501364 Probable 2-oxoglutarate/F N/A no 0.838 0.810 0.393 8e-54
D4N500364 Thebaine 6-O-demethylase N/A no 0.832 0.804 0.387 9e-51
D4N502360 Codeine O-demethylase OS= N/A no 0.855 0.836 0.378 2e-49
>sp|Q39103|G3OX1_ARATH Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2 Back     alignment and function desciption
 Score =  454 bits (1168), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 213/354 (60%), Positives = 270/354 (76%), Gaps = 5/354 (1%)

Query: 1   MPSRLSDAFRAHPVFHQHKHL-DFTSLQELPDSYAWTQRDEYPIGDS----LISESVPVI 55
           MP+ L+D FR HP+   H H+ DFTSL+ELPDSY WT +D+     +       E++P+I
Sbjct: 1   MPAMLTDVFRGHPIHLPHSHIPDFTSLRELPDSYKWTPKDDLLFSAAPSPPATGENIPLI 60

Query: 56  DLNDPNALTLVGNACKTWGAFQVINHGIPTNLLDNTESTSRSLFSLPTQQKLKAARSPDG 115
           DL+ P+A   +G+AC+TWGAFQ+ NHG+P  LL + E  + SLF LP Q+KLK+ARS  G
Sbjct: 61  DLDHPDATNQIGHACRTWGAFQISNHGVPLGLLQDIEFLTGSLFGLPVQRKLKSARSETG 120

Query: 116 VAGYGLARISSFFSKLMWSEGFTVAGSPLDHFRKLWPQDFCKHCDIIEEYEQEMKKLAGR 175
           V+GYG+ARI+SFF+K MWSEGFT+ GSPL+ FRKLWPQ    +CDI+EEYE+ MKKLA +
Sbjct: 121 VSGYGVARIASFFNKQMWSEGFTITGSPLNDFRKLWPQHHLNYCDIVEEYEEHMKKLASK 180

Query: 176 LMWLVLGSLGITTQDVKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLTI 235
           LMWL L SLG++ +D++WA        A AALQLN+YP CP+PDRAMGLA HTDSTLLTI
Sbjct: 181 LMWLALNSLGVSEEDIEWASLSSDLNWAQAALQLNHYPVCPEPDRAMGLAAHTDSTLLTI 240

Query: 236 LYQNNTSGLQVLKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRL 295
           LYQNNT+GLQV ++  GWV VPP PG+LVVNVGDL HILSNG + SVLHRA VN+ + RL
Sbjct: 241 LYQNNTAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQTRARL 300

Query: 296 SIAYLYGPPSSVQISPLQKLVGPSHPPLYRPITWSEYLDTKAKHFNKALSSVKS 349
           S+A+L+GP S ++ISP+ KLV P   PLY+ +TW EYL TKA HFNKALS +++
Sbjct: 301 SVAFLWGPQSDIKISPVPKLVSPVESPLYQSVTWKEYLRTKATHFNKALSMIRN 354
Converts the inactive gibbberellin precursors GA9 and GA20 in the bioactives gibberellins GA4 and GA1.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 1EC: 5
>sp|Q9ZT84|G3OX2_ARATH Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2 Back     alignment and function description
>sp|Q9C971|G3OX4_ARATH Gibberellin 3-beta-dioxygenase 4 OS=Arabidopsis thaliana GN=At1g80330 PE=1 SV=1 Back     alignment and function description
>sp|Q9SVS8|G3OX3_ARATH Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1 Back     alignment and function description
>sp|Q3I409|G3O23_WHEAT Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1 Back     alignment and function description
>sp|Q3I410|G3O22_WHEAT Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q3I411|G3O21_WHEAT Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
365176184368 gibberellin 3 oxidase 1 [Castanea mollis 0.988 0.945 0.801 1e-165
61651585372 gibberellin 3-beta hydroxylase [Prunus s 0.988 0.935 0.792 1e-164
224070877373 gibberellin 3-oxidase [Populus trichocar 0.988 0.932 0.773 1e-160
38154346373 gibberellin 3-oxidase [Populus tremula x 0.988 0.932 0.773 1e-160
405779216371 gibberellin 3-oxidase [Pyrus communis] 0.988 0.938 0.772 1e-159
224058719372 gibberellin 3-oxidase [Populus trichocar 0.988 0.935 0.772 1e-159
340796371368 GA3ox2 [Gossypium hirsutum] 0.982 0.940 0.765 1e-155
340796369364 GA3ox1 [Gossypium hirsutum] 0.963 0.931 0.769 1e-155
255040357369 gibberellin 3-oxidase [Malus x domestica 0.988 0.943 0.752 1e-155
147852208365 hypothetical protein VITISV_028510 [Viti 0.980 0.945 0.735 1e-152
>gi|365176184|gb|AEW67998.1| gibberellin 3 oxidase 1 [Castanea mollissima] Back     alignment and taxonomy information
 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 279/348 (80%), Positives = 308/348 (88%)

Query: 1   MPSRLSDAFRAHPVFHQHKHLDFTSLQELPDSYAWTQRDEYPIGDSLISESVPVIDLNDP 60
           MPSRLSDAF+AHPV    KH DF SLQELPDSY WTQ DEYP  +S  SESVP+IDL DP
Sbjct: 1   MPSRLSDAFKAHPVQLYPKHQDFNSLQELPDSYKWTQLDEYPSCESFSSESVPLIDLTDP 60

Query: 61  NALTLVGNACKTWGAFQVINHGIPTNLLDNTESTSRSLFSLPTQQKLKAARSPDGVAGYG 120
           NALTLVG+ACKTWG FQV NHGIPT LLD+ ES SR LFSLP QQKLKAARSPDGV+GYG
Sbjct: 61  NALTLVGHACKTWGVFQVTNHGIPTKLLDDIESVSRCLFSLPQQQKLKAARSPDGVSGYG 120

Query: 121 LARISSFFSKLMWSEGFTVAGSPLDHFRKLWPQDFCKHCDIIEEYEQEMKKLAGRLMWLV 180
           LARISSFF KLMWSEGFT+ GSPL+HFR+LWPQ++ K CDIIEEYE+EMKKLAGRLMWL+
Sbjct: 121 LARISSFFPKLMWSEGFTIVGSPLEHFRQLWPQEYSKFCDIIEEYEKEMKKLAGRLMWLI 180

Query: 181 LGSLGITTQDVKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLTILYQNN 240
           LGSLGI  +D+KWAGPKG F  ASAALQLN YPACPDPD+AMGLA HTDSTLLTIL+QNN
Sbjct: 181 LGSLGICNEDIKWAGPKGEFQGASAALQLNSYPACPDPDQAMGLAAHTDSTLLTILHQNN 240

Query: 241 TSGLQVLKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRLSIAYL 300
           TSGLQVL+EGTGWV V P+ GALVVN+GDL+HILSNG YPSVLHRA+VNR ++RLS+AYL
Sbjct: 241 TSGLQVLREGTGWVTVDPVQGALVVNIGDLLHILSNGLYPSVLHRAMVNRTRYRLSMAYL 300

Query: 301 YGPPSSVQISPLQKLVGPSHPPLYRPITWSEYLDTKAKHFNKALSSVK 348
           YGPP SVQISPL KL+GPSHPPLYRP+TW+EYL TKAKHFNKALS V+
Sbjct: 301 YGPPDSVQISPLSKLLGPSHPPLYRPVTWNEYLGTKAKHFNKALSCVR 348

Source: Castanea mollissima

Species: Castanea mollissima

Genus: Castanea

Family: Fagaceae

Order: Fagales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|61651585|dbj|BAD91162.1| gibberellin 3-beta hydroxylase [Prunus subhirtella] Back     alignment and taxonomy information
>gi|224070877|ref|XP_002303276.1| gibberellin 3-oxidase [Populus trichocarpa] gi|222840708|gb|EEE78255.1| gibberellin 3-oxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|38154346|gb|AAR12160.1| gibberellin 3-oxidase [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|405779216|gb|AFS18537.1| gibberellin 3-oxidase [Pyrus communis] Back     alignment and taxonomy information
>gi|224058719|ref|XP_002299619.1| gibberellin 3-oxidase [Populus trichocarpa] gi|222846877|gb|EEE84424.1| gibberellin 3-oxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|340796371|gb|AEK70424.1| GA3ox2 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|340796369|gb|AEK70423.1| GA3ox1 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|255040357|gb|ACT99991.1| gibberellin 3-oxidase [Malus x domestica] Back     alignment and taxonomy information
>gi|147852208|emb|CAN80137.1| hypothetical protein VITISV_028510 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
TAIR|locus:2196623358 GA3OX1 "gibberellin 3-oxidase 0.991 0.974 0.604 1.8e-119
TAIR|locus:2034205347 GA3OX2 "gibberellin 3-oxidase 0.982 0.997 0.602 6.2e-117
TAIR|locus:2034195355 GA3OX4 "gibberellin 3-oxidase 0.920 0.912 0.555 2e-97
TAIR|locus:2119068349 GA3OX3 "gibberellin 3-oxidase 0.954 0.962 0.478 2.4e-83
UNIPROTKB|Q9FU53373 P0013F10.29 "GA 3beta-hydroxyl 0.928 0.876 0.419 2.3e-71
UNIPROTKB|Q6AT12384 OSJNBa0029B02.17 "Putative gib 0.940 0.861 0.353 6.4e-60
TAIR|locus:2042942353 AT2G38240 [Arabidopsis thalian 0.875 0.872 0.370 1.2e-51
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.857 0.829 0.379 5.2e-49
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.860 0.816 0.371 1.8e-48
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.860 0.851 0.345 1.3e-45
TAIR|locus:2196623 GA3OX1 "gibberellin 3-oxidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1176 (419.0 bits), Expect = 1.8e-119, P = 1.8e-119
 Identities = 214/354 (60%), Positives = 271/354 (76%)

Query:     1 MPSRLSDAFRAHPVFHQHKHL-DFTSLQELPDSYAWTQRDE--YPIGDS--LISESVPVI 55
             MP+ L+D FR HP+   H H+ DFTSL+ELPDSY WT +D+  +    S     E++P+I
Sbjct:     1 MPAMLTDVFRGHPIHLPHSHIPDFTSLRELPDSYKWTPKDDLLFSAAPSPPATGENIPLI 60

Query:    56 DLNDPNALTLVGNACKTWGAFQVINHGIPTNLLDNTESTSRSLFSLPTQQKLKAARSPDG 115
             DL+ P+A   +G+AC+TWGAFQ+ NHG+P  LL + E  + SLF LP Q+KLK+ARS  G
Sbjct:    61 DLDHPDATNQIGHACRTWGAFQISNHGVPLGLLQDIEFLTGSLFGLPVQRKLKSARSETG 120

Query:   116 VAGYGLARISSFFSKLMWSEGFTVAGSPLDHFRKLWPQDFCKHCDIIEEYEQEMKKLAGR 175
             V+GYG+ARI+SFF+K MWSEGFT+ GSPL+ FRKLWPQ    +CDI+EEYE+ MKKLA +
Sbjct:   121 VSGYGVARIASFFNKQMWSEGFTITGSPLNDFRKLWPQHHLNYCDIVEEYEEHMKKLASK 180

Query:   176 LMWLVLGSLGITTQDVKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLTI 235
             LMWL L SLG++ +D++WA        A AALQLN+YP CP+PDRAMGLA HTDSTLLTI
Sbjct:   181 LMWLALNSLGVSEEDIEWASLSSDLNWAQAALQLNHYPVCPEPDRAMGLAAHTDSTLLTI 240

Query:   236 LYQNNTSGLQVLKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRL 295
             LYQNNT+GLQV ++  GWV VPP PG+LVVNVGDL HILSNG + SVLHRA VN+ + RL
Sbjct:   241 LYQNNTAGLQVFRDDLGWVTVPPFPGSLVVNVGDLFHILSNGLFKSVLHRARVNQTRARL 300

Query:   296 SIAYLYGPPSSVQISPLQKLVGPSHPPLYRPITWSEYLDTKAKHFNKALSSVKS 349
             S+A+L+GP S ++ISP+ KLV P   PLY+ +TW EYL TKA HFNKALS +++
Sbjct:   301 SVAFLWGPQSDIKISPVPKLVSPVESPLYQSVTWKEYLRTKATHFNKALSMIRN 354
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM;TAS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009686 "gibberellin biosynthetic process" evidence=IMP;TAS
GO:0009739 "response to gibberellin stimulus" evidence=IEP
GO:0009639 "response to red or far red light" evidence=IEP
GO:0008134 "transcription factor binding" evidence=IPI
GO:0010114 "response to red light" evidence=IEP
GO:0016707 "gibberellin 3-beta-dioxygenase activity" evidence=IDA;IMP;TAS
GO:0009740 "gibberellic acid mediated signaling pathway" evidence=TAS
TAIR|locus:2034205 GA3OX2 "gibberellin 3-oxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034195 GA3OX4 "gibberellin 3-oxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119068 GA3OX3 "gibberellin 3-oxidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9FU53 P0013F10.29 "GA 3beta-hydroxylase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q6AT12 OSJNBa0029B02.17 "Putative gibberellin 3 beta-hydroxylase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2042942 AT2G38240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q39103G3OX1_ARATH1, ., 1, 4, ., 1, 1, ., 1, 50.60160.99140.9748yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.14.11.150.946
3rd Layer1.14.110.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GA3ox2
gibberellin 3-oxidase (EC-1.14.11.15) (373 aa)
(Populus trichocarpa)
Predicted Functional Partners:
TB1
SubName- Full=Teosinte-branched-like protein; (454 aa)
      • 0.683
CPS1
copalyl diphosphate synthase (EC-5.5.1.13) (795 aa)
      • 0.510
CPS2
copalyl diphosphate synthase (EC-5.5.1.13) (807 aa)
      • 0.510

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 0.0
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 3e-73
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 1e-70
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 8e-69
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 3e-65
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 2e-62
PLN02216357 PLN02216, PLN02216, protein SRG1 2e-61
PLN02704335 PLN02704, PLN02704, flavonol synthase 1e-59
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 6e-58
PLN02947374 PLN02947, PLN02947, oxidoreductase 3e-55
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 2e-51
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-50
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 5e-48
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 1e-47
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 6e-46
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 9e-46
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 3e-44
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 1e-41
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 2e-39
PLN02997325 PLN02997, PLN02997, flavonol synthase 4e-39
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-38
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 4e-38
PLN02485329 PLN02485, PLN02485, oxidoreductase 5e-36
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 4e-35
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 7e-34
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 8e-30
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 4e-21
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 3e-06
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information 
 Score =  642 bits (1658), Expect = 0.0
 Identities = 251/353 (71%), Positives = 294/353 (83%), Gaps = 5/353 (1%)

Query: 1   MPSRLSDAFRAHPV-FHQHKHLDFTSLQELPDSYAWTQRDEYPIG----DSLISESVPVI 55
           MPS LSDAFR+HP+  +    LDFTSLQ LPDS+ WT +D+         S   ES+PVI
Sbjct: 1   MPSTLSDAFRSHPLHLNHIIPLDFTSLQTLPDSHVWTPKDDLLFSSAPSPSTTDESIPVI 60

Query: 56  DLNDPNALTLVGNACKTWGAFQVINHGIPTNLLDNTESTSRSLFSLPTQQKLKAARSPDG 115
           DL+DPNALTL+G+AC+TWG FQV NHGIP +LLD+ ES +R LFSLP Q+KLKAARSPDG
Sbjct: 61  DLSDPNALTLIGHACETWGVFQVTNHGIPLSLLDDIESQTRRLFSLPAQRKLKAARSPDG 120

Query: 116 VAGYGLARISSFFSKLMWSEGFTVAGSPLDHFRKLWPQDFCKHCDIIEEYEQEMKKLAGR 175
           V+GYG+ARISSFF+K MWSEGFT+ GSPL+H R+LWPQD  K CD++EEY++EMKKLA R
Sbjct: 121 VSGYGVARISSFFNKKMWSEGFTIMGSPLEHARQLWPQDHTKFCDVMEEYQKEMKKLAER 180

Query: 176 LMWLVLGSLGITTQDVKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLTI 235
           LMWL+LGSLGIT +D+KWAGPK     A AALQLN YP CPDPDRAMGLA HTDS+LLTI
Sbjct: 181 LMWLMLGSLGITEEDIKWAGPKSGSQGAQAALQLNSYPVCPDPDRAMGLAPHTDSSLLTI 240

Query: 236 LYQNNTSGLQVLKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRL 295
           LYQ+NTSGLQV +EG GWV VPP+PG+LVVNVGDL+HILSNG +PSVLHRAVVN+ +HR+
Sbjct: 241 LYQSNTSGLQVFREGVGWVTVPPVPGSLVVNVGDLLHILSNGRFPSVLHRAVVNKTRHRI 300

Query: 296 SIAYLYGPPSSVQISPLQKLVGPSHPPLYRPITWSEYLDTKAKHFNKALSSVK 348
           S+AY YGPPS VQISPL KLV P+HPPLYR +TW EYL TKAKHFNKALS ++
Sbjct: 301 SVAYFYGPPSDVQISPLPKLVDPNHPPLYRSVTWKEYLATKAKHFNKALSLIR 353

Length = 358
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 352
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02904357 oxidoreductase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02704335 flavonol synthase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02997325 flavonol synthase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02485329 oxidoreductase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.91
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.89
PLN03176120 flavanone-3-hydroxylase; Provisional 99.84
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.46
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 94.3
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 92.65
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 91.42
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information 
Probab=100.00  E-value=4.2e-84  Score=621.22  Aligned_cols=347  Identities=73%  Similarity=1.237  Sum_probs=302.9

Q ss_pred             CCCchhhhhhcCCCCccccc--cccCCCCCCCCccccCCCCCC-CCC---CCCCCCCCceeeCCChhHHHHHHHHHHhcc
Q 036286            1 MPSRLSDAFRAHPVFHQHKH--LDFTSLQELPDSYAWTQRDEY-PIG---DSLISESVPVIDLNDPNALTLVGNACKTWG   74 (352)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ip~~~i~~~~~~~-~~~---~~~~~~~iPvIDls~~~~~~~l~~A~~~~G   74 (352)
                      ||+..+.+.+.+|. ++.+-  ++.+.+.+||++|++|+.+++ |..   .+....+||||||++.+.+++|.+||++||
T Consensus         1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vp~~~v~p~~~~~~~~~~~~~~~~~~~iPvIDl~~~~~~~~l~~Ac~~~G   79 (358)
T PLN02254          1 MPSTLSDAFRSHPL-HLNHIIPLDFTSLQTLPDSHVWTPKDDLLFSSAPSPSTTDESIPVIDLSDPNALTLIGHACETWG   79 (358)
T ss_pred             CCcchhhhhccCCc-ccccccccchhhhccCChhhcCChhhccCccccccccCcCCCCCeEeCCCHHHHHHHHHHHHHCC
Confidence            78888888885554 44445  666767789999999998883 221   112345799999998888999999999999


Q ss_pred             eEEEEcCCCChhHHHHHHHHHHHhhCCCHHHHhhhcCCCCCcccccccccccccccccccccccccCCCcccccCCCCcc
Q 036286           75 AFQVINHGIPTNLLDNTESTSRSLFSLPTQQKLKAARSPDGVAGYGLARISSFFSKLMWSEGFTVAGSPLDHFRKLWPQD  154 (352)
Q Consensus        75 ff~l~nhGI~~~~~~~~~~~a~~fF~lp~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~~~~~~~~~wP~~  154 (352)
                      ||||+||||+.++++++++.+++||+||.|+|+++.+...++.||+.........+.+|+|.|.+...+.....+.||+.
T Consensus        80 FF~vvnHGI~~~l~~~~~~~~~~FF~LP~EeK~k~~~~~~~~~Gy~~~~~~~~~~~~~w~e~~~~~~~p~~~~~~~wP~~  159 (358)
T PLN02254         80 VFQVTNHGIPLSLLDDIESQTRRLFSLPAQRKLKAARSPDGVSGYGVARISSFFNKKMWSEGFTIMGSPLEHARQLWPQD  159 (358)
T ss_pred             EEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCcccccccccccccCCCCceeeEEeecCccccchhhCCCC
Confidence            99999999999999999999999999999999999876667889987666555567899999998765554567899999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhcccCCCCCCCcccccccccccCCCCCCCCccccCCccCCCcEE
Q 036286          155 FCKHCDIIEEYEQEMKKLAGRLMWLVLGSLGITTQDVKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLT  234 (352)
Q Consensus       155 ~~~fr~~~~~y~~~~~~la~~Ll~~la~~Lgl~~~~~~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lT  234 (352)
                      +++||+++++|+++|.+|+.+||++|+++|||++++|...........+.+.||+||||||+.++.++|+++|||+|+||
T Consensus       160 ~~~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lT  239 (358)
T PLN02254        160 HTKFCDVMEEYQKEMKKLAERLMWLMLGSLGITEEDIKWAGPKSGSQGAQAALQLNSYPVCPDPDRAMGLAPHTDSSLLT  239 (358)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccccCcceeEEEecCCCCCCcccccCcCCccCCCcEE
Confidence            99999999999999999999999999999999988775432111124456789999999999999999999999999999


Q ss_pred             EEeeCCCCCeeeEeCCCceEEecCCCCcEEEEcchHHHHHhCCCCCCccccccCCCCCCeeEEEEEeCCCCCCeeecCCC
Q 036286          235 ILYQNNTSGLQVLKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRLSIAYLYGPPSSVQISPLQK  314 (352)
Q Consensus       235 lL~qd~~~GLqV~~~~g~W~~V~p~~~~~vVniGd~Le~~SnG~~ks~~HRV~~~~~~~R~Si~~F~~P~~d~~i~pl~~  314 (352)
                      ||+||+++||||++++|+|++|+|+||++||||||+||+||||+|||++|||+++..++||||+||++|+.|++|+|+++
T Consensus       240 iL~Qd~v~GLQV~~~~~~Wi~V~p~pgalVVNiGD~lq~~SNg~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~i~pl~~  319 (358)
T PLN02254        240 ILYQSNTSGLQVFREGVGWVTVPPVPGSLVVNVGDLLHILSNGRFPSVLHRAVVNKTRHRISVAYFYGPPSDVQISPLPK  319 (358)
T ss_pred             EEecCCCCCceEECCCCEEEEcccCCCCEEEEhHHHHHHHhCCeeccccceeecCCCCCEEEEEEEecCCCCcEEeCcHH
Confidence            99999999999998877899999999999999999999999999999999999998889999999999999999999999


Q ss_pred             ccCCCCCCCCCCccHHHHHHHHHHhhhhhhhhhc
Q 036286          315 LVGPSHPPLYRPITWSEYLDTKAKHFNKALSSVK  348 (352)
Q Consensus       315 ~~~~~~~~~y~~~t~~e~~~~~~~~~~~~~~~~~  348 (352)
                      ++++++|++|++++|+||+..+.+++.+....++
T Consensus       320 lv~~~~p~~Y~~~t~~ey~~~~~~~~~~~~~~~~  353 (358)
T PLN02254        320 LVDPNHPPLYRSVTWKEYLATKAKHFNKALSLIR  353 (358)
T ss_pred             hcCCCCCcccCCcCHHHHHHHHHHhhhhhhhhhh
Confidence            9999999999999999999999988887665554

>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-39
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 5e-39
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-37
1w9y_A319 The Structure Of Acc Oxidase Length = 319 6e-34
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 6e-15
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 1e-09
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 4e-05
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 5e-05
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  158 bits (400), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 162/327 (49%), Gaps = 22/327 (6%)
Query: 29  LPDSYAWTQRDEYPIGDSLISES------VPVIDLND---------PNALTLVGNACKTW 73
           +P  Y   + +   I D  + E       VP IDL +          N +  +  A   W
Sbjct: 18  IPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDW 77
Query: 74  GAFQVINHGIPTNLLDNTESTSRSLFSLPTQQKLKAA--RSPDGVAGYGLARISSFFSKL 131
           G   +INHGIP +L++  +      FSL  ++K K A  ++   + GYG    ++   +L
Sbjct: 78  GVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 137
Query: 132 MWSEGFTVAGSPLDHFR-KLWPQDFCKHCDIIEEYEQEMKKLAGRLMWLVLGSLGITTQD 190
            W + F     P +     +WP+    + +   EY + ++ LA ++   +  S+G+  + 
Sbjct: 138 EWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKAL--SVGLGLEP 195
Query: 191 VKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLTILYQNNTSGLQVLKEG 250
            +     G   +    +++NYYP CP P+ A+G+  HTD + LT +  N   GLQ+  EG
Sbjct: 196 DRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEG 255
Query: 251 TGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRLSIAYLYGPPS-SVQI 309
             WV    +P ++V+++GD + ILSNG Y S+LHR +VN+ K R+S A    PP   + +
Sbjct: 256 K-WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVL 314
Query: 310 SPLQKLVGPSHPPLYRPITWSEYLDTK 336
            PL ++V    P  + P T++++++ K
Sbjct: 315 KPLPEMVSVESPAKFPPRTFAQHIEHK 341
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-130
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-127
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 3e-79
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 6e-78
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 2e-75
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 1e-74
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  374 bits (963), Expect = e-130
 Identities = 94/348 (27%), Positives = 165/348 (47%), Gaps = 24/348 (6%)

Query: 19  KHLDFTSLQELPDSYAWTQRD------EYPIGDSLISESVPVIDLND---------PNAL 63
           + L  + +  +P  Y   + +       +          VP IDL +          N +
Sbjct: 8   ESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCI 67

Query: 64  TLVGNACKTWGAFQVINHGIPTNLLDNTESTSRSLFSLPTQQKLKAA--RSPDGVAGYGL 121
             +  A   WG   +INHGIP +L++  +      FSL  ++K K A  ++   + GYG 
Sbjct: 68  EELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGS 127

Query: 122 ARISSFFSKLMWSEGFTVAGSPLDHFR-KLWPQDFCKHCDIIEEYEQEMKKLAGRLMWLV 180
              ++   +L W + F     P +     +WP+    + +   EY + ++ LA ++   +
Sbjct: 128 KLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKAL 187

Query: 181 LGSLGITTQDVKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLTILYQNN 240
              LG+    ++     G   +    +++NYYP CP P+ A+G+  HTD + LT +  N 
Sbjct: 188 SVGLGLEPDRLEKE--VGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM 245

Query: 241 TSGLQVLKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRLSIAYL 300
             GLQ+  EG  WV    +P ++V+++GD + ILSNG Y S+LHR +VN+ K R+S A  
Sbjct: 246 VPGLQLFYEGK-WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVF 304

Query: 301 YGPPS-SVQISPLQKLVGPSHPPLYRPITWSEYLDTKAKHFNKALSSV 347
             PP   + + PL ++V    P  + P T+++++  + K F K    +
Sbjct: 305 CEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHI--EHKLFGKEQEEL 350
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query352
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 94.82
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 92.48
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 91.64
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 82.39
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=3.9e-79  Score=587.90  Aligned_cols=325  Identities=28%  Similarity=0.519  Sum_probs=283.2

Q ss_pred             ccccccCCCCCCCCccccCCCCCCCCCCC----C---CCCCCceeeCCCh---------hHHHHHHHHHHhcceEEEEcC
Q 036286           18 HKHLDFTSLQELPDSYAWTQRDEYPIGDS----L---ISESVPVIDLNDP---------NALTLVGNACKTWGAFQVINH   81 (352)
Q Consensus        18 ~~~~~~~~~~~ip~~~i~~~~~~~~~~~~----~---~~~~iPvIDls~~---------~~~~~l~~A~~~~Gff~l~nh   81 (352)
                      -+.|..+++++||++|++|.+++ +....    .   ...+||||||+..         +++++|.+||++||||||+||
T Consensus         7 v~~l~~~~~~~vP~~~~~p~~~~-~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~nH   85 (356)
T 1gp6_A            7 VESLAKSGIISIPKEYIRPKEEL-ESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINH   85 (356)
T ss_dssp             HHHHHHTTCSSCCGGGSCCHHHH-TTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESC
T ss_pred             HHHHHhcCCCCCCHHhcCCchhc-ccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeCC
Confidence            35677788999999999998887 43211    0   1246999999842         267899999999999999999


Q ss_pred             CCChhHHHHHHHHHHHhhCCCHHHHhhhcCCC--CCcccccccccccccccccccccccccCCCcc-cccCCCCccchhh
Q 036286           82 GIPTNLLDNTESTSRSLFSLPTQQKLKAARSP--DGVAGYGLARISSFFSKLMWSEGFTVAGSPLD-HFRKLWPQDFCKH  158 (352)
Q Consensus        82 GI~~~~~~~~~~~a~~fF~lp~eeK~~~~~~~--~~~~GY~~~~~~~~~~~~d~~e~~~~~~~~~~-~~~~~wP~~~~~f  158 (352)
                      ||+.++++++++.+++||+||.|+|+++.+..  ..++||+........++.||+|.|.+...+.. ...+.||+.+++|
T Consensus        86 Gi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~~f  165 (356)
T 1gp6_A           86 GIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDY  165 (356)
T ss_dssp             SCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTH
T ss_pred             CCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcchhh
Confidence            99999999999999999999999999998654  46899987765545567899999998755432 4578999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhcccCCCCCCCcccccccccccCCCCCCCCccccCCccCCCcEEEEee
Q 036286          159 CDIIEEYEQEMKKLAGRLMWLVLGSLGITTQDVKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLTILYQ  238 (352)
Q Consensus       159 r~~~~~y~~~~~~la~~Ll~~la~~Lgl~~~~~~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~q  238 (352)
                      |+.+++|+++|.+|+.+||++|+++|||++++|......  ...+.+.||++|||||+.++..+|+++|||+|+||||+|
T Consensus       166 r~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~--~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q  243 (356)
T 1gp6_A          166 IEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGG--LEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH  243 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTH--HHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcc--cCCccceeeeeecCCCCCcccccCcCCccCCCeEEEEEE
Confidence            999999999999999999999999999999888654210  004667899999999999998999999999999999999


Q ss_pred             CCCCCeeeEeCCCceEEecCCCCcEEEEcchHHHHHhCCCCCCccccccCCCCCCeeEEEEEeCCCCCC-eeecCCCccC
Q 036286          239 NNTSGLQVLKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRLSIAYLYGPPSSV-QISPLQKLVG  317 (352)
Q Consensus       239 d~~~GLqV~~~~g~W~~V~p~~~~~vVniGd~Le~~SnG~~ks~~HRV~~~~~~~R~Si~~F~~P~~d~-~i~pl~~~~~  317 (352)
                      |+++||||+++ |+|++|+|++|++||||||+||+||||+|||++|||++++.++|||++||++|+.|+ +|+|++++++
T Consensus       244 d~v~GLQV~~~-g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~~~  322 (356)
T 1gp6_A          244 NMVPGLQLFYE-GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVS  322 (356)
T ss_dssp             CSCCCEEEEET-TEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCC
T ss_pred             cCCCCeEEecC-CcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhhcC
Confidence            99999999974 599999999999999999999999999999999999999889999999999999999 9999999999


Q ss_pred             CCCCCCCCCccHHHHHHHHHHhhhhhhhh
Q 036286          318 PSHPPLYRPITWSEYLDTKAKHFNKALSS  346 (352)
Q Consensus       318 ~~~~~~y~~~t~~e~~~~~~~~~~~~~~~  346 (352)
                      +++|++|+++||+||+..+++...+++.+
T Consensus       323 ~~~p~~y~~~t~~eyl~~~~~~~~d~~~~  351 (356)
T 1gp6_A          323 VESPAKFPPRTFAQHIEHKLFGKEQEELV  351 (356)
T ss_dssp             SSSCCSSCCEEHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCccCCCccHHHHHHHHHHhccCcchh
Confidence            99999999999999999887666566554
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 352
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 1e-66
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 1e-64
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 9e-57
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 9e-45
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  211 bits (538), Expect = 1e-66
 Identities = 97/348 (27%), Positives = 168/348 (48%), Gaps = 24/348 (6%)

Query: 19  KHLDFTSLQELPDSYAWTQRDEYPIGDSLISE------SVPVIDLND---------PNAL 63
           + L  + +  +P  Y   + +   I D  + E       VP IDL +          N +
Sbjct: 7   ESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCI 66

Query: 64  TLVGNACKTWGAFQVINHGIPTNLLDNTESTSRSLFSLPTQQKLKAA--RSPDGVAGYGL 121
             +  A   WG   +INHGIP +L++  +      FSL  ++K K A  ++   + GYG 
Sbjct: 67  EELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGS 126

Query: 122 ARISSFFSKLMWSEGFTVAGSPLDHFR-KLWPQDFCKHCDIIEEYEQEMKKLAGRLMWLV 180
              ++   +L W + F     P +     +WP+    + +   EY + ++ LA ++   +
Sbjct: 127 KLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKAL 186

Query: 181 LGSLGITTQDVKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLTILYQNN 240
              LG+    ++     G   +    +++NYYP CP P+ A+G+  HTD + LT +  N 
Sbjct: 187 SVGLGLEPDRLEKE--VGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNM 244

Query: 241 TSGLQVLKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRLSIAYL 300
             GLQ+  EG  WV    +P ++V+++GD + ILSNG Y S+LHR +VN+ K R+S A  
Sbjct: 245 VPGLQLFYEGK-WVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVF 303

Query: 301 YGPPS-SVQISPLQKLVGPSHPPLYRPITWSEYLDTKAKHFNKALSSV 347
             PP   + + PL ++V    P  + P T+++++  + K F K    +
Sbjct: 304 CEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHI--EHKLFGKEQEEL 349
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query352
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 84.8
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.6e-75  Score=559.83  Aligned_cols=317  Identities=29%  Similarity=0.549  Sum_probs=272.3

Q ss_pred             ccccccCCCCCCCCccccCCCCCCCCC------CCCCCCCCceeeCCCh---------hHHHHHHHHHHhcceEEEEcCC
Q 036286           18 HKHLDFTSLQELPDSYAWTQRDEYPIG------DSLISESVPVIDLNDP---------NALTLVGNACKTWGAFQVINHG   82 (352)
Q Consensus        18 ~~~~~~~~~~~ip~~~i~~~~~~~~~~------~~~~~~~iPvIDls~~---------~~~~~l~~A~~~~Gff~l~nhG   82 (352)
                      -+.|..||+++||++||||++++|...      .+....+||||||+..         ..+++|.+||++||||||+|||
T Consensus         6 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nHG   85 (349)
T d1gp6a_           6 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHG   85 (349)
T ss_dssp             HHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCS
T ss_pred             hHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEccC
Confidence            367889999999999999999984331      2345678999999842         3578999999999999999999


Q ss_pred             CChhHHHHHHHHHHHhhCCCHHHHhhhcCC--CCCcccccccccccccccccccccccccCCCc-ccccCCCCccchhhh
Q 036286           83 IPTNLLDNTESTSRSLFSLPTQQKLKAARS--PDGVAGYGLARISSFFSKLMWSEGFTVAGSPL-DHFRKLWPQDFCKHC  159 (352)
Q Consensus        83 I~~~~~~~~~~~a~~fF~lp~eeK~~~~~~--~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~~~-~~~~~~wP~~~~~fr  159 (352)
                      |+.++++++++++++||+||.|+|+++...  .+.+.||+...........+|.+.+.....+. ....+.||+..+.|+
T Consensus        86 I~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~~f~  165 (349)
T d1gp6a_          86 IPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI  165 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccccchHH
Confidence            999999999999999999999999999754  23455665554444445566666544322222 345689999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhcccCCCCCCCcccccccccccCCCCCCCCccccCCccCCCcEEEEeeC
Q 036286          160 DIIEEYEQEMKKLAGRLMWLVLGSLGITTQDVKWAGPKGHFTDASAALQLNYYPACPDPDRAMGLAEHTDSTLLTILYQN  239 (352)
Q Consensus       160 ~~~~~y~~~~~~la~~Ll~~la~~Lgl~~~~~~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd  239 (352)
                      +.+++|+++|.+|+.+|+++|+++||++++++.....  ......+.||++|||+++.++..+|+++|||+|+||||+|+
T Consensus       166 e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~--~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~  243 (349)
T d1gp6a_         166 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVG--GLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN  243 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTT--HHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhc--cccccceeeeecccccccchhhccccccCCCCcceEEEecc
Confidence            9999999999999999999999999999988754321  11345678999999999998899999999999999999999


Q ss_pred             CCCCeeeEeCCCceEEecCCCCcEEEEcchHHHHHhCCCCCCccccccCCCCCCeeEEEEEeCCCCCCee-ecCCCccCC
Q 036286          240 NTSGLQVLKEGTGWVMVPPIPGALVVNVGDLIHILSNGSYPSVLHRAVVNRAKHRLSIAYLYGPPSSVQI-SPLQKLVGP  318 (352)
Q Consensus       240 ~~~GLqV~~~~g~W~~V~p~~~~~vVniGd~Le~~SnG~~ks~~HRV~~~~~~~R~Si~~F~~P~~d~~i-~pl~~~~~~  318 (352)
                      .++||||+++ |+|++|+|.+|++|||+||+||+||||+||||+|||+.+++++||||+||++|+.|++| +|+++|+++
T Consensus       244 ~~~GLqv~~~-g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~~  322 (349)
T d1gp6a_         244 MVPGLQLFYE-GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSV  322 (349)
T ss_dssp             SCCCEEEEET-TEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCS
T ss_pred             CCcceeeecC-CceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHcCC
Confidence            9999999876 59999999999999999999999999999999999999999999999999999999765 899999999


Q ss_pred             CCCCCCCCccHHHHHHHHH
Q 036286          319 SHPPLYRPITWSEYLDTKA  337 (352)
Q Consensus       319 ~~~~~y~~~t~~e~~~~~~  337 (352)
                      ++|++|+++|++||++.|+
T Consensus       323 ~~p~~y~~~t~~e~~~~rl  341 (349)
T d1gp6a_         323 ESPAKFPPRTFAQHIEHKL  341 (349)
T ss_dssp             SSCCSSCCEEHHHHHHHHH
T ss_pred             CCCCCCCCccHHHHHHHHH
Confidence            9999999999999998876
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure