Citrus Sinensis ID: 036312
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 305 | ||||||
| 301073323 | 289 | acyl-CoA-binding protein [Vitis vinifera | 0.918 | 0.968 | 0.455 | 6e-53 | |
| 225458798 | 289 | PREDICTED: acyl-CoA-binding domain-conta | 0.918 | 0.968 | 0.455 | 8e-53 | |
| 302142221 | 300 | unnamed protein product [Vitis vinifera] | 0.918 | 0.933 | 0.452 | 2e-52 | |
| 224063459 | 362 | predicted protein [Populus trichocarpa] | 0.963 | 0.812 | 0.388 | 1e-48 | |
| 255538104 | 343 | acyl-CoA-binding protein, acbp, putative | 0.924 | 0.822 | 0.373 | 2e-46 | |
| 428754008 | 375 | acyl-CoA binding protein 3B [Vernicia fo | 0.937 | 0.762 | 0.356 | 2e-44 | |
| 224137718 | 375 | predicted protein [Populus trichocarpa] | 0.895 | 0.728 | 0.381 | 1e-41 | |
| 363814555 | 397 | uncharacterized protein LOC100794328 [Gl | 0.740 | 0.569 | 0.393 | 4e-32 | |
| 356564133 | 408 | PREDICTED: acyl-CoA-binding domain-conta | 0.501 | 0.375 | 0.476 | 2e-31 | |
| 428754004 | 273 | acyl-CoA binding protein 3A [Vernicia fo | 0.783 | 0.875 | 0.333 | 2e-31 |
| >gi|301073323|gb|ADK56449.1| acyl-CoA-binding protein [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 213 bits (543), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 143/314 (45%), Positives = 189/314 (60%), Gaps = 34/314 (10%)
Query: 1 MELVQDLVLTALIALLFSYLMAKLVSFAMSGAGDSASASVVEDLKDVDDDVIMEELQFGA 60
MEL Q+L+ T +ALLFS+L+AKLVS AM A D SA ++VDD ++ E++F
Sbjct: 1 MELAQELLFTVSLALLFSFLVAKLVSLAM--AADLKSA------QNVDDHIVANEVRF-- 50
Query: 61 KMNVGILENQHRVEPVQ------QETVEKVDQFEEVVGPRDDDLVEET-VTESAPL--SD 111
+E + RVE V +ET E E V P ++++ E + E++P S
Sbjct: 51 ------VETETRVESVDGGSGLVEETCEITRGGEVPVMPSEEEVSEIVELPENSPRERSG 104
Query: 112 NVIVQSEESNVVGKESEAGVASDDDDDWEGIERSELENVFATAVKFVEVSESQSESGKKR 171
+ I+ S + VV + E + S++DD WEG+ERSELE VFA A FV SG K
Sbjct: 105 HEILVSHDVAVVEERDERELESEEDD-WEGVERSELERVFAAAANFVG-------SGNKG 156
Query: 172 DDALSDVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYVAL 231
D SD MELY LHKIA EGPC +PQPMPL LSAR+KWNAWQ++GNM+ E AME+Y+AL
Sbjct: 157 DGWSSDAQMELYGLHKIAVEGPCHEPQPMPLKLSARAKWNAWQRMGNMSREVAMEQYIAL 216
Query: 232 LSDRVPDWKEENYHVNDKLESEETVKPDAVAPSDTGSFTGDQTDHTHERSLELPSGSEGS 291
LSDRVP W E + +DK ES E D + P+ + S DQ T+E EL SG+ G
Sbjct: 217 LSDRVPGWMEASSAGDDKPESSEGGVHDILDPNQS-SLLHDQISSTNETKPELKSGTLGI 275
Query: 292 DLTAASSTVTVAKE 305
DLT S++V+ KE
Sbjct: 276 DLTEGSNSVSTEKE 289
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225458798|ref|XP_002285196.1| PREDICTED: acyl-CoA-binding domain-containing protein 3 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|302142221|emb|CBI19424.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224063459|ref|XP_002301155.1| predicted protein [Populus trichocarpa] gi|222842881|gb|EEE80428.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|255538104|ref|XP_002510117.1| acyl-CoA-binding protein, acbp, putative [Ricinus communis] gi|223550818|gb|EEF52304.1| acyl-CoA-binding protein, acbp, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|428754008|gb|AFZ62129.1| acyl-CoA binding protein 3B [Vernicia fordii] gi|428754010|gb|AFZ62130.1| acyl-CoA binding protein 3B [Vernicia fordii] | Back alignment and taxonomy information |
|---|
| >gi|224137718|ref|XP_002327195.1| predicted protein [Populus trichocarpa] gi|222835510|gb|EEE73945.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|363814555|ref|NP_001242753.1| uncharacterized protein LOC100794328 [Glycine max] gi|255635139|gb|ACU17926.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356564133|ref|XP_003550311.1| PREDICTED: acyl-CoA-binding domain-containing protein 3 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|428754004|gb|AFZ62127.1| acyl-CoA binding protein 3A [Vernicia fordii] gi|428754006|gb|AFZ62128.1| acyl-CoA binding protein 3A [Vernicia fordii] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 305 | ||||||
| TAIR|locus:2135947 | 366 | ACBP3 "acyl-CoA-binding domain | 0.593 | 0.494 | 0.417 | 3.7e-32 | |
| TAIR|locus:2137380 | 354 | ACBP2 "AT4G27780" [Arabidopsis | 0.403 | 0.347 | 0.453 | 7.7e-31 | |
| TAIR|locus:2178426 | 338 | ACBP1 "acyl-CoA binding protei | 0.426 | 0.384 | 0.446 | 2e-30 | |
| UNIPROTKB|F1LLU7 | 197 | ECI2 "Enoyl-CoA delta isomeras | 0.357 | 0.553 | 0.366 | 5.7e-11 | |
| UNIPROTKB|F8WAW4 | 140 | ECI2 "Enoyl-CoA delta isomeras | 0.357 | 0.778 | 0.366 | 5.7e-11 | |
| UNIPROTKB|F6QBK4 | 198 | ECI2 "Uncharacterized protein" | 0.206 | 0.318 | 0.444 | 1.6e-10 | |
| UNIPROTKB|C9JB63 | 220 | ECI2 "Enoyl-CoA delta isomeras | 0.357 | 0.495 | 0.366 | 5.1e-10 | |
| UNIPROTKB|F1PMM1 | 370 | ECI2 "Uncharacterized protein" | 0.209 | 0.172 | 0.461 | 9e-09 | |
| UNIPROTKB|F1PML6 | 393 | ECI2 "Uncharacterized protein" | 0.209 | 0.162 | 0.461 | 1e-08 | |
| UNIPROTKB|O75521 | 394 | ECI2 "Enoyl-CoA delta isomeras | 0.357 | 0.276 | 0.366 | 1e-08 |
| TAIR|locus:2135947 ACBP3 "acyl-CoA-binding domain 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 81/194 (41%), Positives = 114/194 (58%)
Query: 96 DDLVEETVTESAPLSDNVIVQSEESNVVGKESEAGVASDDDDDWEGIERSELENVFATAV 155
D LV E+ S N++ +S+ E + + ++DDDWEGIERSELE FA AV
Sbjct: 182 DVLVAESEEVRVEKSSNMVEESDAE--AENEEKTELTIEEDDDWEGIERSELEKAFAAAV 239
Query: 156 KFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQK 215
+E ESGK + ++ MEL+ LHKIATEG CR+ QPM +M+SAR+KWNAWQK
Sbjct: 240 NLLE------ESGKAEEIG-AEAKMELFGLHKIATEGSCREAQPMAVMISARAKWNAWQK 292
Query: 216 LGNMNPEEAMERYVALLSDRVPDWKEENYHVNDKLESEETV--KPDAVAPSDTGSFTGDQ 273
LGNM+ EEAME+Y+AL+S +P + + V E E +V P++ + D +
Sbjct: 293 LGNMSQEEAMEQYLALVSKEIPGLTKAGHTVGKMSEMETSVGLPPNSGSLEDPTNLVTTG 352
Query: 274 TDHTHERSLELPSG 287
D + + E+ SG
Sbjct: 353 VDESSKN--EIVSG 364
|
|
| TAIR|locus:2137380 ACBP2 "AT4G27780" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2178426 ACBP1 "acyl-CoA binding protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1LLU7 ECI2 "Enoyl-CoA delta isomerase 2, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F8WAW4 ECI2 "Enoyl-CoA delta isomerase 2, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F6QBK4 ECI2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|C9JB63 ECI2 "Enoyl-CoA delta isomerase 2, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PMM1 ECI2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PML6 ECI2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|O75521 ECI2 "Enoyl-CoA delta isomerase 2, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| eugene3.00021115 | hypothetical protein (362 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 305 | |||
| pfam00887 | 87 | pfam00887, ACBP, Acyl CoA binding protein | 3e-19 | |
| cd00435 | 85 | cd00435, ACBP, Acyl CoA binding protein (ACBP) bin | 3e-14 | |
| PTZ00458 | 90 | PTZ00458, PTZ00458, acyl CoA binding protein; Prov | 2e-09 | |
| COG4281 | 87 | COG4281, ACB, Acyl-CoA-binding protein [Lipid meta | 5e-06 |
| >gnl|CDD|216174 pfam00887, ACBP, Acyl CoA binding protein | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 3e-19
Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 147 LENVFATAVKFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSA 206
LE F AVKFV+ + G+ ++ ++LYAL+K ATEG P+P +
Sbjct: 1 LEEEFEAAVKFVK---KLPKDGRPSNEEK----LKLYALYKQATEGDVNTPRPGMFDVIG 53
Query: 207 RSKWNAWQKLGNMNPEEAMERYVALLSDRVPDWK 240
++KW+AW+KL M+ EEAM++YV L+ + V +
Sbjct: 54 KAKWDAWKKLKGMSKEEAMKKYVELVEELVEKYG 87
|
Length = 87 |
| >gnl|CDD|238248 cd00435, ACBP, Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity | Back alignment and domain information |
|---|
| >gnl|CDD|185637 PTZ00458, PTZ00458, acyl CoA binding protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|226731 COG4281, ACB, Acyl-CoA-binding protein [Lipid metabolism] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 305 | |||
| PTZ00458 | 90 | acyl CoA binding protein; Provisional | 99.97 | |
| cd00435 | 85 | ACBP Acyl CoA binding protein (ACBP) binds thiol e | 99.97 | |
| PF00887 | 87 | ACBP: Acyl CoA binding protein; InterPro: IPR00058 | 99.96 | |
| KOG0817 | 142 | consensus Acyl-CoA-binding protein [Lipid transpor | 99.95 | |
| COG4281 | 87 | ACB Acyl-CoA-binding protein [Lipid metabolism] | 99.9 | |
| KOG3878 | 469 | consensus Protein involved in maintenance of Golgi | 99.12 | |
| smart00295 | 207 | B41 Band 4.1 homologues. Also known as ezrin/radix | 96.98 | |
| PF00373 | 126 | FERM_M: FERM central domain; InterPro: IPR019748 T | 96.7 |
| >PTZ00458 acyl CoA binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=212.62 Aligned_cols=86 Identities=29% Similarity=0.638 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhhhhcccccCCCCCCCChHHHHHHHHHhhhhhcCCCCCCCCCccChhhhHHHHHHHHcCCCCHHHHHHHH
Q 036312 149 NVFATAVKFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERY 228 (305)
Q Consensus 149 e~Fe~Avk~Vk~~~~~~~s~p~~~~ls~D~kL~LYALYKQAT~GdCn~~kPg~~D~vgRaKWdAWkkLgGMSkEEAmk~Y 228 (305)
+.|++|+.+|+ +.+...+++++++|+|||||||||+|||+.++||+|++++|+||+||++++|||+++||++|
T Consensus 3 ~~F~~A~~~v~-------~~~~~~~~s~d~~L~lYalyKQAt~G~c~~~~P~~~d~~~raKw~AW~~l~~ms~~eA~~~Y 75 (90)
T PTZ00458 3 DLFEECVSFIN-------SLPKTVNLSVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKKYEAWKSIENLNREDAKKRY 75 (90)
T ss_pred HHHHHHHHHHH-------hCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 46999999998 34445689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccc
Q 036312 229 VALLSDRVPDWKE 241 (305)
Q Consensus 229 IeLV~el~P~W~~ 241 (305)
|+++.+++|.|..
T Consensus 76 I~l~~~l~~~w~~ 88 (90)
T PTZ00458 76 VEIVTELFPNWEK 88 (90)
T ss_pred HHHHHHHhhcccc
Confidence 9999999999984
|
|
| >cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity | Back alignment and domain information |
|---|
| >PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters [] | Back alignment and domain information |
|---|
| >KOG0817 consensus Acyl-CoA-binding protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
| >COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism] | Back alignment and domain information |
|---|
| >KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >smart00295 B41 Band 4 | Back alignment and domain information |
|---|
| >PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 305 | ||||
| 2cqu_A | 116 | Solution Structure Of Rsgi Ruh-045, A Human Acyl-Co | 3e-09 | ||
| 2lbb_A | 96 | Solution Structure Of Acyl Coa Binding Protein From | 1e-08 | ||
| 3flv_A | 119 | The Crystal Structure Of Human Acyl-Coenzymea Bindi | 2e-07 | ||
| 2cop_A | 109 | Solution Structure Of Rsgi Ruh-040, An Acbp Domain | 2e-07 | ||
| 2wh5_A | 106 | Crystal Structure Of Human Acyl-Coa Binding Domain | 3e-06 | ||
| 1hbk_A | 89 | Acyl-Coa Binding Protein From Plasmodium Falciparum | 6e-06 | ||
| 1st7_A | 86 | Solution Structure Of Acyl Coenzyme A Binding Prote | 1e-04 |
| >pdb|2CQU|A Chain A, Solution Structure Of Rsgi Ruh-045, A Human Acyl-Coa Binding Protein Length = 116 | Back alignment and structure |
|
| >pdb|2LBB|A Chain A, Solution Structure Of Acyl Coa Binding Protein From Babesia Bovis T2bo Length = 96 | Back alignment and structure |
| >pdb|3FLV|A Chain A, The Crystal Structure Of Human Acyl-Coenzymea Binding Domain Containing 5 Length = 119 | Back alignment and structure |
| >pdb|2COP|A Chain A, Solution Structure Of Rsgi Ruh-040, An Acbp Domain From Human Cdna Length = 109 | Back alignment and structure |
| >pdb|2WH5|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 4 Complexed With Stearoyl-Coa Length = 106 | Back alignment and structure |
| >pdb|1HBK|A Chain A, Acyl-Coa Binding Protein From Plasmodium Falciparum Length = 89 | Back alignment and structure |
| >pdb|1ST7|A Chain A, Solution Structure Of Acyl Coenzyme A Binding Protein From Yeast Length = 86 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 305 | |||
| 1hbk_A | 89 | ACBP, acyl-COA binding protein; fatty acid metabol | 9e-24 | |
| 3flv_A | 119 | Acyl-COA-binding domain-containing protein 5; lipi | 2e-23 | |
| 2lbb_A | 96 | Acyl COA binding protein; protein binding, structu | 1e-22 | |
| 2cqu_A | 116 | Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA bi | 1e-21 | |
| 2wh5_A | 106 | Acyl-COA-binding domain-containing protein 4; alte | 1e-21 | |
| 2cop_A | 109 | Acyl-coenzyme A binding domain containing 6; acyl | 2e-20 | |
| 1st7_A | 86 | ACBP, acyl-COA-binding protein; four helix bundle, | 4e-20 | |
| 3fp5_A | 106 | Acyl-COA binding protein; ACBP, cacao disease, fat | 2e-19 | |
| 2cb8_A | 87 | Acyl-COA-binding protein; acyl-coenzyme A binding | 3e-19 | |
| 3epy_A | 89 | Acyl-COA-binding domain-containing protein 7; acyl | 6e-19 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-08 |
| >1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1 Length = 89 | Back alignment and structure |
|---|
Score = 91.9 bits (228), Expect = 9e-24
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 147 LENVFATAVKFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSA 206
+ VF V F+ + + +++ ++LY +K +T G C +P
Sbjct: 2 MAQVFEECVSFIN-------GLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYID 54
Query: 207 RSKWNAWQKLGNMNPEEAMERYVALLSDRVPDWKE 241
R K+ AW+ + N+N E+A +RYV ++S+ P W++
Sbjct: 55 RKKYEAWKSVENLNREDAQKRYVDIVSEIFPYWQD 89
|
| >3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens} Length = 119 | Back alignment and structure |
|---|
| >2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis} Length = 96 | Back alignment and structure |
|---|
| >2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
| >2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
| >2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109 | Back alignment and structure |
|---|
| >1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae} Length = 86 | Back alignment and structure |
|---|
| >3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} Length = 106 | Back alignment and structure |
|---|
| >2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A Length = 87 | Back alignment and structure |
|---|
| >3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} Length = 89 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 305 | |||
| 1hbk_A | 89 | ACBP, acyl-COA binding protein; fatty acid metabol | 99.98 | |
| 2cop_A | 109 | Acyl-coenzyme A binding domain containing 6; acyl | 99.98 | |
| 1st7_A | 86 | ACBP, acyl-COA-binding protein; four helix bundle, | 99.97 | |
| 3epy_A | 89 | Acyl-COA-binding domain-containing protein 7; acyl | 99.97 | |
| 2cqu_A | 116 | Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA bi | 99.97 | |
| 2cb8_A | 87 | Acyl-COA-binding protein; acyl-coenzyme A binding | 99.97 | |
| 2lbb_A | 96 | Acyl COA binding protein; protein binding, structu | 99.97 | |
| 2wh5_A | 106 | Acyl-COA-binding domain-containing protein 4; alte | 99.96 | |
| 3fp5_A | 106 | Acyl-COA binding protein; ACBP, cacao disease, fat | 99.96 | |
| 3flv_A | 119 | Acyl-COA-binding domain-containing protein 5; lipi | 99.96 | |
| 1mix_A | 206 | Talin; focal adhesion, integrin binding, FERM doma | 98.29 | |
| 4f7g_A | 222 | Talin-1; alpha-helix bundle, integrin activation, | 95.22 | |
| 1ef1_A | 294 | Moesin; membrane, FERM domain, tail domain, membra | 95.18 | |
| 1h4r_A | 314 | Merlin; FERM, neurofibromatosis, NF2, structural p | 94.94 | |
| 3qij_A | 296 | Protein 4.1; cytoskeleton, structural genomics, st | 94.88 | |
| 3ivf_A | 371 | Talin-1; FERM domain, cell membrane, cell projecti | 94.31 | |
| 2i1j_A | 575 | Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, | 93.62 | |
| 3au4_A | 555 | Myosin-X; protein-protein complex, motor protein c | 92.14 | |
| 4dxa_B | 322 | KREV interaction trapped protein 1; GTPase, FERM, | 88.0 | |
| 2al6_A | 375 | Focal adhesion kinase 1; transferase; 2.35A {Gallu | 87.42 |
| >1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-32 Score=218.38 Aligned_cols=88 Identities=28% Similarity=0.595 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHhhhhcccccCCCCCCCChHHHHHHHHHhhhhhcCCCCCCCCCccChhhhHHHHHHHHcCCCCHHHHHH
Q 036312 147 LENVFATAVKFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAME 226 (305)
Q Consensus 147 LEe~Fe~Avk~Vk~~~~~~~s~p~~~~ls~D~kL~LYALYKQAT~GdCn~~kPg~~D~vgRaKWdAWkkLgGMSkEEAmk 226 (305)
|++.|++|+++|+ .++...+|+++++|+|||||||||+|||++++||+||++||+||+||++++|||+++||+
T Consensus 2 l~~~F~~A~~~v~-------~l~~~~~~~~~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~ 74 (89)
T 1hbk_A 2 MAQVFEECVSFIN-------GLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQK 74 (89)
T ss_dssp HHHHHHHHHHHHH-------HSCTTCCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTSHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred hHHHHHHHHHHHH-------hcCCcCCCCHHHHHHHHHHHHHhhcCCCCCCCCCccCHHhHHHHHHHHHhcCCCHHHHHH
Confidence 6789999999999 233236899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccc
Q 036312 227 RYVALLSDRVPDWKE 241 (305)
Q Consensus 227 ~YIeLV~el~P~W~~ 241 (305)
+||+++++++|.|.+
T Consensus 75 ~YI~~v~~l~~~~~~ 89 (89)
T 1hbk_A 75 RYVDIVSEIFPYWQD 89 (89)
T ss_dssp HHHHHHHHHCTTTTC
T ss_pred HHHHHHHHHcccccC
Confidence 999999999999973
|
| >2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1 | Back alignment and structure |
|---|
| >2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A | Back alignment and structure |
|---|
| >2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis} | Back alignment and structure |
|---|
| >2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0 | Back alignment and structure |
|---|
| >3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
| >1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B | Back alignment and structure |
|---|
| >4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} | Back alignment and structure |
|---|
| >1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A | Back alignment and structure |
|---|
| >1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A | Back alignment and structure |
|---|
| >3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A | Back alignment and structure |
|---|
| >3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A | Back alignment and structure |
|---|
| >2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A | Back alignment and structure |
|---|
| >3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A | Back alignment and structure |
|---|
| >4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A | Back alignment and structure |
|---|
| >2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 305 | ||||
| d1hbka_ | 89 | a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium | 3e-25 | |
| d1hb6a_ | 86 | a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos t | 7e-19 |
| >d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]} Length = 89 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl-CoA binding protein-like superfamily: Acyl-CoA binding protein family: Acyl-CoA binding protein domain: Acyl-CoA binding protein species: Plasmodium falciparum [TaxId: 5833]
Score = 94.5 bits (235), Expect = 3e-25
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 147 LENVFATAVKFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSA 206
+ VF V F+ + + +++ ++LY +K +T G C +P
Sbjct: 2 MAQVFEECVSFIN-------GLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYID 54
Query: 207 RSKWNAWQKLGNMNPEEAMERYVALLSDRVPDWKE 241
R K+ AW+ + N+N E+A +RYV ++S+ P W++
Sbjct: 55 RKKYEAWKSVENLNREDAQKRYVDIVSEIFPYWQD 89
|
| >d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]} Length = 86 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 305 | |||
| d1hbka_ | 89 | Acyl-CoA binding protein {Plasmodium falciparum [T | 99.97 | |
| d1hb6a_ | 86 | Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: | 99.96 | |
| d1h4ra1 | 111 | Merlin {Human (Homo sapiens) [TaxId: 9606]} | 97.49 | |
| d1mixa1 | 114 | Talin {Chicken (Gallus gallus) [TaxId: 9031]} | 97.47 | |
| d1gg3a1 | 106 | Erythroid membrane protein 4.1R {Human (Homo sapie | 97.4 | |
| d1ef1a1 | 111 | Moesin {Human (Homo sapiens) [TaxId: 9606]} | 97.37 | |
| d2al6a1 | 123 | Focal adhesion kinase 1 {Chicken (Gallus gallus) [ | 94.94 |
| >d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Acyl-CoA binding protein-like superfamily: Acyl-CoA binding protein family: Acyl-CoA binding protein domain: Acyl-CoA binding protein species: Plasmodium falciparum [TaxId: 5833]
Probab=99.97 E-value=4.3e-32 Score=213.91 Aligned_cols=88 Identities=28% Similarity=0.595 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhhhhcccccCCCCCCCChHHHHHHHHHhhhhhcCCCCCCCCCccChhhhHHHHHHHHcCCCCHHHHHH
Q 036312 147 LENVFATAVKFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAME 226 (305)
Q Consensus 147 LEe~Fe~Avk~Vk~~~~~~~s~p~~~~ls~D~kL~LYALYKQAT~GdCn~~kPg~~D~vgRaKWdAWkkLgGMSkEEAmk 226 (305)
|++.|+.|+.+|+ +.+....++++++|+|||||||||+|||+.++|++|++.+|+||+||++++|||+++||+
T Consensus 2 L~~~F~~A~~~v~-------~~~~~~~~~~~~~L~lY~lyKQat~G~~~~~~P~~~~~~~~~Kw~AW~~l~gms~~eA~~ 74 (89)
T d1hbka_ 2 MAQVFEECVSFIN-------GLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQK 74 (89)
T ss_dssp HHHHHHHHHHHHH-------HSCTTCCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTSHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred hHHHHHHHHHHHH-------hCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHcCCCCHHHHHH
Confidence 7899999999999 334456789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccccc
Q 036312 227 RYVALLSDRVPDWKE 241 (305)
Q Consensus 227 ~YIeLV~el~P~W~~ 241 (305)
.||+++++++|+|.+
T Consensus 75 ~Yi~~v~~l~p~w~~ 89 (89)
T d1hbka_ 75 RYVDIVSEIFPYWQD 89 (89)
T ss_dssp HHHHHHHHHCTTTTC
T ss_pred HHHHHHHHHcccccC
Confidence 999999999999974
|
| >d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
| >d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|