Citrus Sinensis ID: 036312


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
MELVQDLVLTALIALLFSYLMAKLVSFAMSGAGDSASASVVEDLKDVDDDVIMEELQFGAKMNVGILENQHRVEPVQQETVEKVDQFEEVVGPRDDDLVEETVTESAPLSDNVIVQSEESNVVGKESEAGVASDDDDDWEGIERSELENVFATAVKFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYVALLSDRVPDWKEENYHVNDKLESEETVKPDAVAPSDTGSFTGDQTDHTHERSLELPSGSEGSDLTAASSTVTVAKE
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccccccccccccccEEEEEEEEccccccccccccccEEEcccEccccccccccEEEEEccccccccccEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccEEcccc
MELVQDLVLTALIALLFSYLMAKLVSFAmsgagdsasaSVVEDLKDVDDDVIMEELQFGakmnvgilenqhrvepvqqetVEKVDQfeevvgprdddlveetvtesaplsdnvivqseesnvvgkeseagvasdddddwegiersELENVFATAVKFVEVsesqsesgkkrdDALSDVHMELYALHKIategpcrdpqpmplmlSARSKWNAWQKLGNMNPEEAMERYVALLSdrvpdwkeenyhvndkleseetvkpdavapsdtgsftgdqtdhtherslelpsgsegsdltaasSTVTVAKE
MELVQDLVLTALIALLFSYLMAKLVSFAMSGAGDSASASVVEDLKDVDDDVIMEELQFGAKMNVGILENQHRVEPVQQetvekvdqfeevvgprdddLVEETvtesaplsdnvivqseesnvvgkeseagvasdddddWEGIERSELENVFATAVKFVevsesqsesgkkrddaLSDVHMELYALHKIategpcrdpQPMPLMLSARSKWNAWQKLGNMNPEEAMERYVALLSDRVPDWKEENYHvndkleseetvkpdavapsdtgsftgdqtdhTHERSlelpsgsegsdltaasstvtvake
MELVQDLVLTALIALLFSYLMAKLVsfamsgagdsasasvvedlkdvdddvIMEELQFGAKMNVGILENQHRVEPVQQETVEKVDQFEEVVGPRDDDLVEETVTESAPLSDNVIVQSEESNVVGKESEAGVASDDDDDWEGIERSELENVFATAVKFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYVALLSDRVPDWKEENYHVNDKLESEETVKPDAVAPSDTGSFTGDQTDHTHERSLELPSGSEGSDLTAASSTVTVAKE
***VQDLVLTALIALLFSYLMAKLVSFAMSGAG*****SVVEDLKDVDDDVIMEELQFGAKMNVGILENQ****************************************************************************LENVFATAVKFV*******************VHMELYALHKIAT*****************SKWNAWQKLG*******MERYVALLSDRVPDWK*****************************************************************
*ELVQDLVLTALIALLFSYLMAKLVSFAMSGAG******************IMEE*******************************************************************************************LENVFATAVKFVEVS**************SDVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYVALLSDRVPDWK*****************************************************************
MELVQDLVLTALIALLFSYLMAKLVSFAMSG*********VEDLKDVDDDVIMEELQFGAKMNVGILENQHRVEPVQQETVEKVDQFEEVVGPRDDDLVEETVTESAPLSDNVIVQSE******************DDWEGIERSELENVFATAVKFVE**************ALSDVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYVALLSDRVPDWKEENYHVNDKLESEETVKPDAVAPSDTGSFT***********************************
MELVQDLVLTALIALLFSYLMAKLVSFAMSGAG**************DDDVIMEELQFGAKMNVGILENQHRVEPVQQETVEKVDQFEEVVGPRDDDLVEETVTES*************************************RSELENVFATAVKFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYVALLSDRVPDWK*****************************************************************
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MELVQDLVLTALIALLFSYLMAKLVSFAMSGAGDSASASVVEDLKDVDDDVIMEELQFGAKMNVGILENQHRVEPVQQETVEKVDQFEEVVGPRDDDLVEETVTESAPLSDNVIVQSEESNVVGKESEAGVASDDDDDWEGIERSELENVFATAVKFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYVALLSDRVPDWKEENYHVNDKLESEETVKPDAVAPSDTGSFTGDQTDHTHERSLELPSGSEGSDLTAASSTVTVAKE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query305 2.2.26 [Sep-21-2011]
Q9STX1362 Acyl-CoA-binding domain-c yes no 0.409 0.345 0.514 1e-32
Q9STP8354 Acyl-CoA-binding domain-c no no 0.609 0.525 0.343 7e-23
Q9SM23338 Acyl-CoA-binding domain-c no no 0.216 0.195 0.560 5e-18
Q8RWD9 648 Acyl-CoA-binding domain-c no no 0.291 0.137 0.370 8e-10
Q9MA55 668 Acyl-CoA-binding domain-c no no 0.291 0.133 0.359 7e-09
Q9WUR2 391 Enoyl-CoA delta isomerase yes no 0.203 0.158 0.435 2e-08
O75521 394 Enoyl-CoA delta isomerase yes no 0.193 0.149 0.440 3e-08
Q5XIC0 391 Enoyl-CoA delta isomerase yes no 0.203 0.158 0.419 4e-08
Q5R7V3 525 Acyl-CoA-binding domain-c no no 0.265 0.154 0.372 3e-07
A0FKI7 506 Acyl-CoA-binding domain-c no no 0.265 0.160 0.372 5e-07
>sp|Q9STX1|ACBP3_ARATH Acyl-CoA-binding domain-containing protein 3 OS=Arabidopsis thaliana GN=ACBP3 PE=1 SV=1 Back     alignment and function desciption
 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/136 (51%), Positives = 91/136 (66%), Gaps = 11/136 (8%)

Query: 134 DDDDDWEGIERSELENVFATAVKFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGP 193
           ++DDDWEGIERSELE  FA AV  +E      ESGK  +   ++  MEL+ LHKIATEG 
Sbjct: 218 EEDDDWEGIERSELEKAFAAAVNLLE------ESGKAEEIG-AEAKMELFGLHKIATEGS 270

Query: 194 CRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYVALLSDRVPDWKEENYHVNDKLESE 253
           CR+ QPM +M+SAR+KWNAWQKLGNM+ EEAME+Y+AL+S  +P   +  + V    E E
Sbjct: 271 CREAQPMAVMISARAKWNAWQKLGNMSQEEAMEQYLALVSKEIPGLTKAGHTVGKMSEME 330

Query: 254 ETVKPDAVAPSDTGSF 269
            +V      P ++GS 
Sbjct: 331 TSVG----LPPNSGSL 342




Binds medium- and long-chain acyl-CoA esters with very high affinity. Can interact in vitro with arachidonyl-CoA, barely with oleoyl-CoA, but not with palmitoyl-CoA.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9STP8|ACBP2_ARATH Acyl-CoA-binding domain-containing protein 2 OS=Arabidopsis thaliana GN=ACBP2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SM23|ACBP1_ARATH Acyl-CoA-binding domain-containing protein 1 OS=Arabidopsis thaliana GN=ACBP1 PE=1 SV=2 Back     alignment and function description
>sp|Q8RWD9|ACBP5_ARATH Acyl-CoA-binding domain-containing protein 5 OS=Arabidopsis thaliana GN=ACBP5 PE=1 SV=1 Back     alignment and function description
>sp|Q9MA55|ACBP4_ARATH Acyl-CoA-binding domain-containing protein 4 OS=Arabidopsis thaliana GN=ACBP4 PE=1 SV=1 Back     alignment and function description
>sp|Q9WUR2|ECI2_MOUSE Enoyl-CoA delta isomerase 2, mitochondrial OS=Mus musculus GN=Eci2 PE=1 SV=2 Back     alignment and function description
>sp|O75521|ECI2_HUMAN Enoyl-CoA delta isomerase 2, mitochondrial OS=Homo sapiens GN=ECI2 PE=1 SV=4 Back     alignment and function description
>sp|Q5XIC0|ECI2_RAT Enoyl-CoA delta isomerase 2, mitochondrial OS=Rattus norvegicus GN=Eci2 PE=1 SV=1 Back     alignment and function description
>sp|Q5R7V3|ACBD5_PONAB Acyl-CoA-binding domain-containing protein 5 OS=Pongo abelii GN=ACBD5 PE=2 SV=1 Back     alignment and function description
>sp|A0FKI7|ACBD5_RAT Acyl-CoA-binding domain-containing protein 5 OS=Rattus norvegicus GN=Acbd5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query305
301073323289 acyl-CoA-binding protein [Vitis vinifera 0.918 0.968 0.455 6e-53
225458798289 PREDICTED: acyl-CoA-binding domain-conta 0.918 0.968 0.455 8e-53
302142221300 unnamed protein product [Vitis vinifera] 0.918 0.933 0.452 2e-52
224063459362 predicted protein [Populus trichocarpa] 0.963 0.812 0.388 1e-48
255538104343 acyl-CoA-binding protein, acbp, putative 0.924 0.822 0.373 2e-46
428754008375 acyl-CoA binding protein 3B [Vernicia fo 0.937 0.762 0.356 2e-44
224137718375 predicted protein [Populus trichocarpa] 0.895 0.728 0.381 1e-41
363814555397 uncharacterized protein LOC100794328 [Gl 0.740 0.569 0.393 4e-32
356564133 408 PREDICTED: acyl-CoA-binding domain-conta 0.501 0.375 0.476 2e-31
428754004273 acyl-CoA binding protein 3A [Vernicia fo 0.783 0.875 0.333 2e-31
>gi|301073323|gb|ADK56449.1| acyl-CoA-binding protein [Vitis vinifera] Back     alignment and taxonomy information
 Score =  213 bits (543), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 143/314 (45%), Positives = 189/314 (60%), Gaps = 34/314 (10%)

Query: 1   MELVQDLVLTALIALLFSYLMAKLVSFAMSGAGDSASASVVEDLKDVDDDVIMEELQFGA 60
           MEL Q+L+ T  +ALLFS+L+AKLVS AM  A D  SA      ++VDD ++  E++F  
Sbjct: 1   MELAQELLFTVSLALLFSFLVAKLVSLAM--AADLKSA------QNVDDHIVANEVRF-- 50

Query: 61  KMNVGILENQHRVEPVQ------QETVEKVDQFEEVVGPRDDDLVEET-VTESAPL--SD 111
                 +E + RVE V       +ET E     E  V P ++++ E   + E++P   S 
Sbjct: 51  ------VETETRVESVDGGSGLVEETCEITRGGEVPVMPSEEEVSEIVELPENSPRERSG 104

Query: 112 NVIVQSEESNVVGKESEAGVASDDDDDWEGIERSELENVFATAVKFVEVSESQSESGKKR 171
           + I+ S +  VV +  E  + S++DD WEG+ERSELE VFA A  FV        SG K 
Sbjct: 105 HEILVSHDVAVVEERDERELESEEDD-WEGVERSELERVFAAAANFVG-------SGNKG 156

Query: 172 DDALSDVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYVAL 231
           D   SD  MELY LHKIA EGPC +PQPMPL LSAR+KWNAWQ++GNM+ E AME+Y+AL
Sbjct: 157 DGWSSDAQMELYGLHKIAVEGPCHEPQPMPLKLSARAKWNAWQRMGNMSREVAMEQYIAL 216

Query: 232 LSDRVPDWKEENYHVNDKLESEETVKPDAVAPSDTGSFTGDQTDHTHERSLELPSGSEGS 291
           LSDRVP W E +   +DK ES E    D + P+ + S   DQ   T+E   EL SG+ G 
Sbjct: 217 LSDRVPGWMEASSAGDDKPESSEGGVHDILDPNQS-SLLHDQISSTNETKPELKSGTLGI 275

Query: 292 DLTAASSTVTVAKE 305
           DLT  S++V+  KE
Sbjct: 276 DLTEGSNSVSTEKE 289




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458798|ref|XP_002285196.1| PREDICTED: acyl-CoA-binding domain-containing protein 3 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302142221|emb|CBI19424.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224063459|ref|XP_002301155.1| predicted protein [Populus trichocarpa] gi|222842881|gb|EEE80428.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255538104|ref|XP_002510117.1| acyl-CoA-binding protein, acbp, putative [Ricinus communis] gi|223550818|gb|EEF52304.1| acyl-CoA-binding protein, acbp, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|428754008|gb|AFZ62129.1| acyl-CoA binding protein 3B [Vernicia fordii] gi|428754010|gb|AFZ62130.1| acyl-CoA binding protein 3B [Vernicia fordii] Back     alignment and taxonomy information
>gi|224137718|ref|XP_002327195.1| predicted protein [Populus trichocarpa] gi|222835510|gb|EEE73945.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|363814555|ref|NP_001242753.1| uncharacterized protein LOC100794328 [Glycine max] gi|255635139|gb|ACU17926.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356564133|ref|XP_003550311.1| PREDICTED: acyl-CoA-binding domain-containing protein 3 [Glycine max] Back     alignment and taxonomy information
>gi|428754004|gb|AFZ62127.1| acyl-CoA binding protein 3A [Vernicia fordii] gi|428754006|gb|AFZ62128.1| acyl-CoA binding protein 3A [Vernicia fordii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query305
TAIR|locus:2135947366 ACBP3 "acyl-CoA-binding domain 0.593 0.494 0.417 3.7e-32
TAIR|locus:2137380354 ACBP2 "AT4G27780" [Arabidopsis 0.403 0.347 0.453 7.7e-31
TAIR|locus:2178426338 ACBP1 "acyl-CoA binding protei 0.426 0.384 0.446 2e-30
UNIPROTKB|F1LLU7197 ECI2 "Enoyl-CoA delta isomeras 0.357 0.553 0.366 5.7e-11
UNIPROTKB|F8WAW4140 ECI2 "Enoyl-CoA delta isomeras 0.357 0.778 0.366 5.7e-11
UNIPROTKB|F6QBK4198 ECI2 "Uncharacterized protein" 0.206 0.318 0.444 1.6e-10
UNIPROTKB|C9JB63220 ECI2 "Enoyl-CoA delta isomeras 0.357 0.495 0.366 5.1e-10
UNIPROTKB|F1PMM1 370 ECI2 "Uncharacterized protein" 0.209 0.172 0.461 9e-09
UNIPROTKB|F1PML6 393 ECI2 "Uncharacterized protein" 0.209 0.162 0.461 1e-08
UNIPROTKB|O75521 394 ECI2 "Enoyl-CoA delta isomeras 0.357 0.276 0.366 1e-08
TAIR|locus:2135947 ACBP3 "acyl-CoA-binding domain 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 81/194 (41%), Positives = 114/194 (58%)

Query:    96 DDLVEETVTESAPLSDNVIVQSEESNVVGKESEAGVASDDDDDWEGIERSELENVFATAV 155
             D LV E+       S N++ +S+       E +  +  ++DDDWEGIERSELE  FA AV
Sbjct:   182 DVLVAESEEVRVEKSSNMVEESDAE--AENEEKTELTIEEDDDWEGIERSELEKAFAAAV 239

Query:   156 KFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQK 215
               +E      ESGK  +   ++  MEL+ LHKIATEG CR+ QPM +M+SAR+KWNAWQK
Sbjct:   240 NLLE------ESGKAEEIG-AEAKMELFGLHKIATEGSCREAQPMAVMISARAKWNAWQK 292

Query:   216 LGNMNPEEAMERYVALLSDRVPDWKEENYHVNDKLESEETV--KPDAVAPSDTGSFTGDQ 273
             LGNM+ EEAME+Y+AL+S  +P   +  + V    E E +V   P++ +  D  +     
Sbjct:   293 LGNMSQEEAMEQYLALVSKEIPGLTKAGHTVGKMSEMETSVGLPPNSGSLEDPTNLVTTG 352

Query:   274 TDHTHERSLELPSG 287
              D + +   E+ SG
Sbjct:   353 VDESSKN--EIVSG 364


GO:0000062 "fatty-acyl-CoA binding" evidence=IEA;ISS;IDA
GO:0005576 "extracellular region" evidence=ISM;IDA
GO:0005615 "extracellular space" evidence=IDA
GO:0015908 "fatty acid transport" evidence=TAS
GO:0006952 "defense response" evidence=IEP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:0050832 "defense response to fungus" evidence=IMP
GO:0009617 "response to bacterium" evidence=IEP
GO:0009646 "response to absence of light" evidence=IEP
TAIR|locus:2137380 ACBP2 "AT4G27780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178426 ACBP1 "acyl-CoA binding protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1LLU7 ECI2 "Enoyl-CoA delta isomerase 2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F8WAW4 ECI2 "Enoyl-CoA delta isomerase 2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F6QBK4 ECI2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|C9JB63 ECI2 "Enoyl-CoA delta isomerase 2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PMM1 ECI2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1PML6 ECI2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O75521 ECI2 "Enoyl-CoA delta isomerase 2, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
eugene3.00021115
hypothetical protein (362 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
pfam0088787 pfam00887, ACBP, Acyl CoA binding protein 3e-19
cd0043585 cd00435, ACBP, Acyl CoA binding protein (ACBP) bin 3e-14
PTZ0045890 PTZ00458, PTZ00458, acyl CoA binding protein; Prov 2e-09
COG428187 COG4281, ACB, Acyl-CoA-binding protein [Lipid meta 5e-06
>gnl|CDD|216174 pfam00887, ACBP, Acyl CoA binding protein Back     alignment and domain information
 Score = 80.3 bits (199), Expect = 3e-19
 Identities = 35/94 (37%), Positives = 55/94 (58%), Gaps = 7/94 (7%)

Query: 147 LENVFATAVKFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSA 206
           LE  F  AVKFV+      + G+  ++      ++LYAL+K ATEG    P+P    +  
Sbjct: 1   LEEEFEAAVKFVK---KLPKDGRPSNEEK----LKLYALYKQATEGDVNTPRPGMFDVIG 53

Query: 207 RSKWNAWQKLGNMNPEEAMERYVALLSDRVPDWK 240
           ++KW+AW+KL  M+ EEAM++YV L+ + V  + 
Sbjct: 54  KAKWDAWKKLKGMSKEEAMKKYVELVEELVEKYG 87


Length = 87

>gnl|CDD|238248 cd00435, ACBP, Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity Back     alignment and domain information
>gnl|CDD|185637 PTZ00458, PTZ00458, acyl CoA binding protein; Provisional Back     alignment and domain information
>gnl|CDD|226731 COG4281, ACB, Acyl-CoA-binding protein [Lipid metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 305
PTZ0045890 acyl CoA binding protein; Provisional 99.97
cd0043585 ACBP Acyl CoA binding protein (ACBP) binds thiol e 99.97
PF0088787 ACBP: Acyl CoA binding protein; InterPro: IPR00058 99.96
KOG0817142 consensus Acyl-CoA-binding protein [Lipid transpor 99.95
COG428187 ACB Acyl-CoA-binding protein [Lipid metabolism] 99.9
KOG3878 469 consensus Protein involved in maintenance of Golgi 99.12
smart00295207 B41 Band 4.1 homologues. Also known as ezrin/radix 96.98
PF00373126 FERM_M: FERM central domain; InterPro: IPR019748 T 96.7
>PTZ00458 acyl CoA binding protein; Provisional Back     alignment and domain information
Probab=99.97  E-value=3.4e-31  Score=212.62  Aligned_cols=86  Identities=29%  Similarity=0.638  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHhhhhcccccCCCCCCCChHHHHHHHHHhhhhhcCCCCCCCCCccChhhhHHHHHHHHcCCCCHHHHHHHH
Q 036312          149 NVFATAVKFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERY  228 (305)
Q Consensus       149 e~Fe~Avk~Vk~~~~~~~s~p~~~~ls~D~kL~LYALYKQAT~GdCn~~kPg~~D~vgRaKWdAWkkLgGMSkEEAmk~Y  228 (305)
                      +.|++|+.+|+       +.+...+++++++|+|||||||||+|||+.++||+|++++|+||+||++++|||+++||++|
T Consensus         3 ~~F~~A~~~v~-------~~~~~~~~s~d~~L~lYalyKQAt~G~c~~~~P~~~d~~~raKw~AW~~l~~ms~~eA~~~Y   75 (90)
T PTZ00458          3 DLFEECVSFIN-------SLPKTVNLSVEIKLDLYKYYKQSTVGNCNIKEPSMFKYQDRKKYEAWKSIENLNREDAKKRY   75 (90)
T ss_pred             HHHHHHHHHHH-------hCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            46999999998       34445689999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccccc
Q 036312          229 VALLSDRVPDWKE  241 (305)
Q Consensus       229 IeLV~el~P~W~~  241 (305)
                      |+++.+++|.|..
T Consensus        76 I~l~~~l~~~w~~   88 (90)
T PTZ00458         76 VEIVTELFPNWEK   88 (90)
T ss_pred             HHHHHHHhhcccc
Confidence            9999999999984



>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity Back     alignment and domain information
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters [] Back     alignment and domain information
>KOG0817 consensus Acyl-CoA-binding protein [Lipid transport and metabolism] Back     alignment and domain information
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism] Back     alignment and domain information
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00295 B41 Band 4 Back     alignment and domain information
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
2cqu_A116 Solution Structure Of Rsgi Ruh-045, A Human Acyl-Co 3e-09
2lbb_A96 Solution Structure Of Acyl Coa Binding Protein From 1e-08
3flv_A119 The Crystal Structure Of Human Acyl-Coenzymea Bindi 2e-07
2cop_A109 Solution Structure Of Rsgi Ruh-040, An Acbp Domain 2e-07
2wh5_A106 Crystal Structure Of Human Acyl-Coa Binding Domain 3e-06
1hbk_A89 Acyl-Coa Binding Protein From Plasmodium Falciparum 6e-06
1st7_A86 Solution Structure Of Acyl Coenzyme A Binding Prote 1e-04
>pdb|2CQU|A Chain A, Solution Structure Of Rsgi Ruh-045, A Human Acyl-Coa Binding Protein Length = 116 Back     alignment and structure

Iteration: 1

Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 39/59 (66%) Query: 171 RDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAMERYV 229 + D ++V ++LYAL+K ATEGPC P+P L ++KW+AW LG++ E A + YV Sbjct: 31 KKDPGNEVKLKLYALYKQATEGPCNMPKPGVFDLINKAKWDAWNALGSLPKEAARQNYV 89
>pdb|2LBB|A Chain A, Solution Structure Of Acyl Coa Binding Protein From Babesia Bovis T2bo Length = 96 Back     alignment and structure
>pdb|3FLV|A Chain A, The Crystal Structure Of Human Acyl-Coenzymea Binding Domain Containing 5 Length = 119 Back     alignment and structure
>pdb|2COP|A Chain A, Solution Structure Of Rsgi Ruh-040, An Acbp Domain From Human Cdna Length = 109 Back     alignment and structure
>pdb|2WH5|A Chain A, Crystal Structure Of Human Acyl-Coa Binding Domain 4 Complexed With Stearoyl-Coa Length = 106 Back     alignment and structure
>pdb|1HBK|A Chain A, Acyl-Coa Binding Protein From Plasmodium Falciparum Length = 89 Back     alignment and structure
>pdb|1ST7|A Chain A, Solution Structure Of Acyl Coenzyme A Binding Protein From Yeast Length = 86 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query305
1hbk_A89 ACBP, acyl-COA binding protein; fatty acid metabol 9e-24
3flv_A119 Acyl-COA-binding domain-containing protein 5; lipi 2e-23
2lbb_A96 Acyl COA binding protein; protein binding, structu 1e-22
2cqu_A116 Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA bi 1e-21
2wh5_A106 Acyl-COA-binding domain-containing protein 4; alte 1e-21
2cop_A109 Acyl-coenzyme A binding domain containing 6; acyl 2e-20
1st7_A86 ACBP, acyl-COA-binding protein; four helix bundle, 4e-20
3fp5_A106 Acyl-COA binding protein; ACBP, cacao disease, fat 2e-19
2cb8_A87 Acyl-COA-binding protein; acyl-coenzyme A binding 3e-19
3epy_A89 Acyl-COA-binding domain-containing protein 7; acyl 6e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1 Length = 89 Back     alignment and structure
 Score = 91.9 bits (228), Expect = 9e-24
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 147 LENVFATAVKFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSA 206
           +  VF   V F+           +  +  +++ ++LY  +K +T G C   +P       
Sbjct: 2   MAQVFEECVSFIN-------GLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYID 54

Query: 207 RSKWNAWQKLGNMNPEEAMERYVALLSDRVPDWKE 241
           R K+ AW+ + N+N E+A +RYV ++S+  P W++
Sbjct: 55  RKKYEAWKSVENLNREDAQKRYVDIVSEIFPYWQD 89


>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens} Length = 119 Back     alignment and structure
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis} Length = 96 Back     alignment and structure
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 116 Back     alignment and structure
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens} Length = 106 Back     alignment and structure
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 109 Back     alignment and structure
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae} Length = 86 Back     alignment and structure
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} Length = 106 Back     alignment and structure
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A Length = 87 Back     alignment and structure
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} Length = 89 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query305
1hbk_A89 ACBP, acyl-COA binding protein; fatty acid metabol 99.98
2cop_A109 Acyl-coenzyme A binding domain containing 6; acyl 99.98
1st7_A86 ACBP, acyl-COA-binding protein; four helix bundle, 99.97
3epy_A89 Acyl-COA-binding domain-containing protein 7; acyl 99.97
2cqu_A116 Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA bi 99.97
2cb8_A87 Acyl-COA-binding protein; acyl-coenzyme A binding 99.97
2lbb_A96 Acyl COA binding protein; protein binding, structu 99.97
2wh5_A106 Acyl-COA-binding domain-containing protein 4; alte 99.96
3fp5_A106 Acyl-COA binding protein; ACBP, cacao disease, fat 99.96
3flv_A119 Acyl-COA-binding domain-containing protein 5; lipi 99.96
1mix_A206 Talin; focal adhesion, integrin binding, FERM doma 98.29
4f7g_A222 Talin-1; alpha-helix bundle, integrin activation, 95.22
1ef1_A294 Moesin; membrane, FERM domain, tail domain, membra 95.18
1h4r_A314 Merlin; FERM, neurofibromatosis, NF2, structural p 94.94
3qij_A296 Protein 4.1; cytoskeleton, structural genomics, st 94.88
3ivf_A371 Talin-1; FERM domain, cell membrane, cell projecti 94.31
2i1j_A 575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 93.62
3au4_A555 Myosin-X; protein-protein complex, motor protein c 92.14
4dxa_B322 KREV interaction trapped protein 1; GTPase, FERM, 88.0
2al6_A375 Focal adhesion kinase 1; transferase; 2.35A {Gallu 87.42
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1 Back     alignment and structure
Probab=99.98  E-value=1.1e-32  Score=218.38  Aligned_cols=88  Identities=28%  Similarity=0.595  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHHhhhhcccccCCCCCCCChHHHHHHHHHhhhhhcCCCCCCCCCccChhhhHHHHHHHHcCCCCHHHHHH
Q 036312          147 LENVFATAVKFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAME  226 (305)
Q Consensus       147 LEe~Fe~Avk~Vk~~~~~~~s~p~~~~ls~D~kL~LYALYKQAT~GdCn~~kPg~~D~vgRaKWdAWkkLgGMSkEEAmk  226 (305)
                      |++.|++|+++|+       .++...+|+++++|+|||||||||+|||++++||+||++||+||+||++++|||+++||+
T Consensus         2 l~~~F~~A~~~v~-------~l~~~~~~~~~~~L~LYalyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~   74 (89)
T 1hbk_A            2 MAQVFEECVSFIN-------GLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQK   74 (89)
T ss_dssp             HHHHHHHHHHHHH-------HSCTTCCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTSHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             hHHHHHHHHHHHH-------hcCCcCCCCHHHHHHHHHHHHHhhcCCCCCCCCCccCHHhHHHHHHHHHhcCCCHHHHHH
Confidence            6789999999999       233236899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccccc
Q 036312          227 RYVALLSDRVPDWKE  241 (305)
Q Consensus       227 ~YIeLV~el~P~W~~  241 (305)
                      +||+++++++|.|.+
T Consensus        75 ~YI~~v~~l~~~~~~   89 (89)
T 1hbk_A           75 RYVDIVSEIFPYWQD   89 (89)
T ss_dssp             HHHHHHHHHCTTTTC
T ss_pred             HHHHHHHHHcccccC
Confidence            999999999999973



>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1 Back     alignment and structure
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A Back     alignment and structure
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis} Back     alignment and structure
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens} Back     alignment and structure
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0 Back     alignment and structure
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens} Back     alignment and structure
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B Back     alignment and structure
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} Back     alignment and structure
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A Back     alignment and structure
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A Back     alignment and structure
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Back     alignment and structure
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Back     alignment and structure
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A Back     alignment and structure
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A Back     alignment and structure
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 305
d1hbka_89 a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium 3e-25
d1hb6a_86 a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos t 7e-19
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]} Length = 89 Back     information, alignment and structure

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Acyl-CoA binding protein
family: Acyl-CoA binding protein
domain: Acyl-CoA binding protein
species: Plasmodium falciparum [TaxId: 5833]
 Score = 94.5 bits (235), Expect = 3e-25
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 147 LENVFATAVKFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSA 206
           +  VF   V F+           +  +  +++ ++LY  +K +T G C   +P       
Sbjct: 2   MAQVFEECVSFIN-------GLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYID 54

Query: 207 RSKWNAWQKLGNMNPEEAMERYVALLSDRVPDWKE 241
           R K+ AW+ + N+N E+A +RYV ++S+  P W++
Sbjct: 55  RKKYEAWKSVENLNREDAQKRYVDIVSEIFPYWQD 89


>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]} Length = 86 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query305
d1hbka_89 Acyl-CoA binding protein {Plasmodium falciparum [T 99.97
d1hb6a_86 Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 99.96
d1h4ra1111 Merlin {Human (Homo sapiens) [TaxId: 9606]} 97.49
d1mixa1114 Talin {Chicken (Gallus gallus) [TaxId: 9031]} 97.47
d1gg3a1106 Erythroid membrane protein 4.1R {Human (Homo sapie 97.4
d1ef1a1111 Moesin {Human (Homo sapiens) [TaxId: 9606]} 97.37
d2al6a1123 Focal adhesion kinase 1 {Chicken (Gallus gallus) [ 94.94
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Acyl-CoA binding protein
family: Acyl-CoA binding protein
domain: Acyl-CoA binding protein
species: Plasmodium falciparum [TaxId: 5833]
Probab=99.97  E-value=4.3e-32  Score=213.91  Aligned_cols=88  Identities=28%  Similarity=0.595  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHhhhhcccccCCCCCCCChHHHHHHHHHhhhhhcCCCCCCCCCccChhhhHHHHHHHHcCCCCHHHHHH
Q 036312          147 LENVFATAVKFVEVSESQSESGKKRDDALSDVHMELYALHKIATEGPCRDPQPMPLMLSARSKWNAWQKLGNMNPEEAME  226 (305)
Q Consensus       147 LEe~Fe~Avk~Vk~~~~~~~s~p~~~~ls~D~kL~LYALYKQAT~GdCn~~kPg~~D~vgRaKWdAWkkLgGMSkEEAmk  226 (305)
                      |++.|+.|+.+|+       +.+....++++++|+|||||||||+|||+.++|++|++.+|+||+||++++|||+++||+
T Consensus         2 L~~~F~~A~~~v~-------~~~~~~~~~~~~~L~lY~lyKQat~G~~~~~~P~~~~~~~~~Kw~AW~~l~gms~~eA~~   74 (89)
T d1hbka_           2 MAQVFEECVSFIN-------GLPRTINLPNELKLDLYKYYKQSTIGNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQK   74 (89)
T ss_dssp             HHHHHHHHHHHHH-------HSCTTCCCCHHHHHHHHHHHHHHHTCSCCSCCCCTTSHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             hHHHHHHHHHHHH-------hCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHcCCCCHHHHHH
Confidence            7899999999999       334456789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccccc
Q 036312          227 RYVALLSDRVPDWKE  241 (305)
Q Consensus       227 ~YIeLV~el~P~W~~  241 (305)
                      .||+++++++|+|.+
T Consensus        75 ~Yi~~v~~l~p~w~~   89 (89)
T d1hbka_          75 RYVDIVSEIFPYWQD   89 (89)
T ss_dssp             HHHHHHHHHCTTTTC
T ss_pred             HHHHHHHHHcccccC
Confidence            999999999999974



>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure