Citrus Sinensis ID: 036371

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
YNVLRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKGRYLLGYVAFNGDCKSSDITFRIDGTLVAPADYCVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTVFTGTQNGLL
ccccccccccccccccHHHHHHHHHHHHccccccEEEEcccEEEEEEEEEEcccccccEEEEEccEEEEcccccccccccEEEEEEEEEcEEEEEEEEEccccEEccccccccccccEEEEEEEccEEEEEEEEEccccEEEEEEccccEEEEEEEEEcccccccccEEEcccEEcEEEEccEEEccccEEEEccccccEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEccccccc
ccHHHcccccccccccHHHHHHHHHHHHcccccEEEEEcccEEEEEEEEEEcccccccEEEEEEEEEEccccHHHccccccEEEEEEEcEEEEEEEEEccccccHcccccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEccEEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEccccccEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEccccccc
ynvlrfgakgngvaDSTQAFAKAWAAACAStesatinvpkgryLLGYVafngdckssditfridgtlvapadycvlgqadnwlsfegvsgvsIIGGaldakgsslwackasgtncpdgatlyQLQNIRINGLLSLNSQMFHIVINGckdvhiegvtviapgnspntdgihVQLSTNAKimnctiktgddcipigpgtknlwiervtcgpahgisigslgkdmndegvqNVTVIRTVFTGTQNGLL
ynvlrfgakgngvaDSTQAFAKAWAAACASTesatinvpkGRYLLGYVAFNGDCKSSDITFRIDGTLVAPADYCVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTvftgtqngll
YNVLRFGAKGNGVADstqafakawaaacastesatINVPKGRYLLGYVAFNGDCKSSDITFRIDGTLVAPADYCVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTVFTGTQNGLL
***********GVADSTQAFAKAWAAACASTESATINVPKGRYLLGYVAFNGDCKSSDITFRIDGTLVAPADYCVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTVFTG******
YNVLRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKGRYLLGYVAFNGDCKSSDITFRIDGTLVAPADYCVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTVFTGTQNGLL
YNVLRFGAKGNGVADSTQAFAK**********SATINVPKGRYLLGYVAFNGDCKSSDITFRIDGTLVAPADYCVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTVFTGTQNGLL
YN*LRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKGRYLLGYVAFNGDCKSSDITFRIDGTLVAPADYCVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTVFTGTQN***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
YNVLRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKGRYLLGYVAFNGDCKSSDITFRIDGTLVAPADYCVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTVFTGTQNGLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query245 2.2.26 [Sep-21-2011]
P48979 393 Polygalacturonase OS=Prun N/A no 0.995 0.620 0.596 5e-78
O22818 405 Probable polygalacturonas no no 0.991 0.6 0.532 3e-67
Q6H9K0 377 Exopolygalacturonase (Fra N/A no 0.979 0.636 0.470 2e-53
P26216 410 Exopolygalacturonase OS=Z N/A no 0.959 0.573 0.437 2e-47
P35338 410 Exopolygalacturonase OS=Z N/A no 0.959 0.573 0.433 2e-47
Q9LW07 456 Probable polygalacturonas no no 0.975 0.524 0.442 5e-47
P35339 410 Exopolygalacturonase OS=Z N/A no 0.991 0.592 0.408 2e-46
O23147 431 Polygalacturonase ADPG1 O no no 0.983 0.559 0.428 5e-46
Q39786 407 Polygalacturonase OS=Goss N/A no 0.975 0.587 0.412 2e-45
Q40312 421 Polygalacturonase OS=Medi N/A no 0.979 0.570 0.391 4e-45
>sp|P48979|PGLR_PRUPE Polygalacturonase OS=Prunus persica PE=2 SV=1 Back     alignment and function desciption
 Score =  290 bits (743), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 148/248 (59%), Positives = 176/248 (70%), Gaps = 4/248 (1%)

Query: 1   YNVLRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKGRYLLGYVAFNGDCKSSDIT 60
           YNV   GAK +G  DST+AF  AWA ACAS     I VP G + L  V F+G CK++ IT
Sbjct: 28  YNVASLGAKADGKTDSTKAFLSAWAKACASMNPGVIYVPAGTFFLRDVVFSGPCKNNAIT 87

Query: 61  FRIDGTLVAPADYCVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKA-SGTNCPDGA 119
           FRI GTLVAP+DY V+G A NW+ F  V+GV+I GG LD +G++LWACKA  G +CP GA
Sbjct: 88  FRIAGTLVAPSDYRVIGNAANWIFFHHVNGVTISGGILDGQGTALWACKACHGESCPSGA 147

Query: 120 TLYQLQ---NIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTN 176
           T        NI ++GL SLNSQMFHIVIN  ++V ++GV V   GNSPNTDGIHVQ+S+ 
Sbjct: 148 TTLGFSDSNNIVVSGLASLNSQMFHIVINDFQNVQMQGVRVSRSGNSPNTDGIHVQMSSG 207

Query: 177 AKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTV 236
             I+N  I TGDDC+ IGPGT NLWIE V CGP HGISIGSLGK+  + GVQNVTV    
Sbjct: 208 VTILNSKIATGDDCVSIGPGTSNLWIEGVACGPGHGISIGSLGKEQEEAGVQNVTVKTVT 267

Query: 237 FTGTQNGL 244
           F+GTQNGL
Sbjct: 268 FSGTQNGL 275
Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation.
Prunus persica (taxid: 3760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|O22818|PGLR6_ARATH Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1 Back     alignment and function description
>sp|Q6H9K0|PGLR2_PLAAC Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1 Back     alignment and function description
>sp|P26216|PGLR1_MAIZE Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1 Back     alignment and function description
>sp|P35338|PGLR2_MAIZE Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1 Back     alignment and function description
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1 Back     alignment and function description
>sp|P35339|PGLR3_MAIZE Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|Q39786|PGLR_GOSHI Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|Q40312|PGLR_MEDSA Polygalacturonase OS=Medicago sativa PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
255566763 387 Polygalacturonase precursor, putative [R 0.995 0.630 0.720 2e-97
224109162 397 predicted protein [Populus trichocarpa] 0.995 0.614 0.713 9e-96
147858963 376 hypothetical protein VITISV_033513 [Viti 0.991 0.646 0.647 2e-84
255576396 393 Polygalacturonase precursor, putative [R 0.995 0.620 0.627 6e-83
296083401 390 unnamed protein product [Vitis vinifera] 0.995 0.625 0.678 9e-83
30349261 351 endopolygalacturonase [Prunus persica] 0.987 0.689 0.620 1e-82
356577135 399 PREDICTED: LOW QUALITY PROTEIN: polygala 0.995 0.611 0.616 4e-82
296083402 401 unnamed protein product [Vitis vinifera] 0.995 0.608 0.649 6e-82
297841087 397 hypothetical protein ARALYDRAFT_894135 [ 0.991 0.612 0.592 9e-82
15218742 397 pectin lyase-like protein [Arabidopsis t 0.991 0.612 0.588 1e-81
>gi|255566763|ref|XP_002524365.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223536326|gb|EEF37976.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 178/247 (72%), Positives = 196/247 (79%), Gaps = 3/247 (1%)

Query: 1   YNVLRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKGRYLLGYVAFNGDCKSSDIT 60
           YNVL +GAK NG+ DST+AF  AWAAAC ST+S  I VPKGRYLLG ++F G CKS  IT
Sbjct: 23  YNVLSYGAKPNGITDSTKAFLDAWAAACGSTDSTMIYVPKGRYLLGSMSFKGGCKSHSIT 82

Query: 61  FRIDGTLVAPADYCVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGAT 120
            RIDGTLVAP DY +LG+A +WLSFEGV GVSIIGGALDAKGS+LW CKA GT+CP GAT
Sbjct: 83  IRIDGTLVAPEDYLILGKATSWLSFEGVDGVSIIGGALDAKGSTLWDCKAKGTDCPTGAT 142

Query: 121 LYQL---QNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNA 177
             +     NIRINGLLSLNSQMFHI INGC+DVH+EG+ VIA  +SPNTDG HVQ S N 
Sbjct: 143 TLRFTNSNNIRINGLLSLNSQMFHIAINGCQDVHVEGLKVIASRDSPNTDGFHVQSSNNV 202

Query: 178 KIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTVF 237
            IMN  IKTGDDCI IGPGTKNLWIE V CGP HGISIGSL KD  +EGVQNVTV RT+F
Sbjct: 203 VIMNSVIKTGDDCISIGPGTKNLWIEGVKCGPGHGISIGSLAKDTEEEGVQNVTVKRTIF 262

Query: 238 TGTQNGL 244
             TQNG 
Sbjct: 263 ADTQNGF 269

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224109162|ref|XP_002315106.1| predicted protein [Populus trichocarpa] gi|222864146|gb|EEF01277.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147858963|emb|CAN78679.1| hypothetical protein VITISV_033513 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576396|ref|XP_002529090.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531441|gb|EEF33274.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|296083401|emb|CBI23356.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|30349261|gb|AAP21998.1| endopolygalacturonase [Prunus persica] Back     alignment and taxonomy information
>gi|356577135|ref|XP_003556683.1| PREDICTED: LOW QUALITY PROTEIN: polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|296083402|emb|CBI23357.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297841087|ref|XP_002888425.1| hypothetical protein ARALYDRAFT_894135 [Arabidopsis lyrata subsp. lyrata] gi|297334266|gb|EFH64684.1| hypothetical protein ARALYDRAFT_894135 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15218742|ref|NP_176735.1| pectin lyase-like protein [Arabidopsis thaliana] gi|2190556|gb|AAB60920.1| F5I14.10 [Arabidopsis thaliana] gi|91806027|gb|ABE65742.1| polygalacturonase/pectinase [Arabidopsis thaliana] gi|332196276|gb|AEE34397.1| pectin lyase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
TAIR|locus:2043924 384 AT2G43870 [Arabidopsis thalian 0.995 0.635 0.572 1.4e-73
TAIR|locus:2034131 397 AT1G65570 [Arabidopsis thalian 0.991 0.612 0.552 5.9e-73
TAIR|locus:2080422 388 AT3G59850 [Arabidopsis thalian 0.995 0.628 0.544 7.7e-71
TAIR|locus:2051764 392 AT2G43890 [Arabidopsis thalian 0.991 0.619 0.477 5.5e-61
TAIR|locus:2031963 394 AT1G05660 [Arabidopsis thalian 0.991 0.616 0.449 1.2e-60
TAIR|locus:2031953 394 AT1G05650 [Arabidopsis thalian 0.991 0.616 0.441 6.4e-60
TAIR|locus:2043894 394 AT2G43880 [Arabidopsis thalian 0.991 0.616 0.469 5.7e-59
TAIR|locus:2043974 405 AT2G43860 [Arabidopsis thalian 0.991 0.6 0.487 1.9e-58
UNIPROTKB|Q6H9K0 377 plaa2 "Exopolygalacturonase" [ 0.979 0.636 0.426 2.6e-47
TAIR|locus:2128023 394 AT4G35670 [Arabidopsis thalian 0.991 0.616 0.395 2.8e-43
TAIR|locus:2043924 AT2G43870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
 Identities = 142/248 (57%), Positives = 168/248 (67%)

Query:     1 YNVLRFGAKGNGVADXXXXXXXXXXXXXXXXXXXXINVPKGRYLLGYVAFNGD-CKSSDI 59
             YNVL FGAK +G  D                    I VPKGR+LL  V F+G  CK   +
Sbjct:    21 YNVLSFGAKPDGKTDATKAFMAVWQTACASSRPVTIVVPKGRFLLRSVTFDGSKCKPKPV 80

Query:    60 TFRIDGTLVAPADYCVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGA 119
             TFRIDGTLVAPADY V+G  D W+ F+ + G+++ GG LDA+G+SLW CK SG NCP GA
Sbjct:    81 TFRIDGTLVAPADYRVIGNEDYWIFFQHLDGITVYGGVLDARGASLWDCKKSGKNCPSGA 140

Query:   120 TLYQLQ---NIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTN 176
             T    Q   N+ ++GL SLNSQMFH+VINGC +V ++GV V+A GNSPNTDGIHVQ S++
Sbjct:   141 TTIGFQSSSNVVVSGLTSLNSQMFHVVINGCNNVKLQGVKVLAAGNSPNTDGIHVQSSSS 200

Query:   177 AKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTV 236
               I N  I TGDDC+ IGPGT  LWIE V CGP HGISIGSLGKD  + GVQNVTV    
Sbjct:   201 VSIFNTKISTGDDCVSIGPGTNGLWIENVACGPGHGISIGSLGKDSVESGVQNVTVKTVT 260

Query:   237 FTGTQNGL 244
             FTGT NG+
Sbjct:   261 FTGTDNGV 268
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2034131 AT1G65570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080422 AT3G59850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051764 AT2G43890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031963 AT1G05660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031953 AT1G05650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043894 AT2G43880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043974 AT2G43860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6H9K0 plaa2 "Exopolygalacturonase" [Platanus x acerifolia (taxid:140101)] Back     alignment and assigned GO terms
TAIR|locus:2128023 AT4G35670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
PLN02155 394 PLN02155, PLN02155, polygalacturonase 1e-86
PLN03010 409 PLN03010, PLN03010, polygalacturonase 2e-61
PLN02188 404 PLN02188, PLN02188, polygalacturonase/glycoside hy 3e-61
PLN03003 456 PLN03003, PLN03003, Probable polygalacturonase At3 1e-57
PLN02793 443 PLN02793, PLN02793, Probable polygalacturonase 2e-57
PLN02218 431 PLN02218, PLN02218, polygalacturonase ADPG 3e-56
pfam00295 325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 2e-55
COG5434 542 COG5434, PGU1, Endopygalactorunase [Cell envelope 9e-20
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 2e-05
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information 
 Score =  262 bits (670), Expect = 1e-86
 Identities = 124/247 (50%), Positives = 171/247 (69%), Gaps = 4/247 (1%)

Query: 1   YNVLRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKGRYLLGYVAFNGDCKSSDIT 60
           +NV+ FGAK +GV DST AF KAW  AC S  SAT+ VP G +LL  + F G CKS  IT
Sbjct: 28  FNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKSK-IT 86

Query: 61  FRIDGTLVAPADYCVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGA- 119
           F++ GT+VAP DY   G +  W+ F  V+  S++GG  DA+ +  W+C+ SG NCP G  
Sbjct: 87  FQVAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVR 146

Query: 120 --TLYQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNA 177
             +    +++ I+G+ S+NSQ+ H+ +NGC +V +  V ++APGNSPNTDG HVQ ST  
Sbjct: 147 SISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGV 206

Query: 178 KIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTVF 237
                T++TGDDC+ IGPGT+N  I ++ CGP HG+SIGSL K++N++GV+NVTV  +VF
Sbjct: 207 TFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVF 266

Query: 238 TGTQNGL 244
           TG+QNG+
Sbjct: 267 TGSQNGV 273

Length = 394
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 245
PLN02155 394 polygalacturonase 100.0
PLN02218 431 polygalacturonase ADPG 100.0
PLN02793 443 Probable polygalacturonase 100.0
PLN02188 404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN03003 456 Probable polygalacturonase At3g15720 100.0
PLN03010 409 polygalacturonase 100.0
PF00295 326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.96
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.94
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 99.76
PLN02793 443 Probable polygalacturonase 99.7
PLN02218431 polygalacturonase ADPG 99.69
PLN03003 456 Probable polygalacturonase At3g15720 99.67
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.65
PF03718 582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.65
PLN02155394 polygalacturonase 99.62
PLN03010409 polygalacturonase 99.61
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.59
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 99.36
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.18
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 99.17
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.78
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.77
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.67
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.61
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.58
COG3866 345 PelB Pectate lyase [Carbohydrate transport and met 98.57
smart00656190 Amb_all Amb_all domain. 98.56
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.53
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.52
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.52
PLN02480343 Probable pectinesterase 98.46
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.34
PRK10531 422 acyl-CoA thioesterase; Provisional 98.33
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.23
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.08
PLN02665366 pectinesterase family protein 98.07
PLN02176340 putative pectinesterase 98.06
PLN02682369 pectinesterase family protein 98.05
PLN02773317 pectinesterase 98.05
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.98
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 97.97
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.95
PLN02916502 pectinesterase family protein 97.91
PLN02634359 probable pectinesterase 97.89
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.88
PLN02432293 putative pectinesterase 97.86
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 97.85
PLN02671359 pectinesterase 97.84
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.84
PF1221867 End_N_terminal: N terminal extension of bacterioph 97.84
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.82
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.82
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 97.82
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.81
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.8
smart00656190 Amb_all Amb_all domain. 97.79
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.79
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.77
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.76
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.75
PLN02197588 pectinesterase 97.74
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 97.72
PLN02314586 pectinesterase 97.71
PLN02301548 pectinesterase/pectinesterase inhibitor 97.71
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.68
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.65
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 97.63
PLN02304379 probable pectinesterase 97.58
PRK10123 464 wcaM putative colanic acid biosynthesis protein; P 97.5
PLN02497331 probable pectinesterase 97.37
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.31
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.18
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 96.68
PLN02480343 Probable pectinesterase 96.51
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 95.86
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 95.81
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 95.79
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 95.57
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 95.23
PLN02665366 pectinesterase family protein 93.67
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 93.6
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 93.38
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 92.74
PRK10123 464 wcaM putative colanic acid biosynthesis protein; P 92.72
PLN02497331 probable pectinesterase 91.77
PLN02773317 pectinesterase 91.0
PLN02698 497 Probable pectinesterase/pectinesterase inhibitor 88.53
PLN02176340 putative pectinesterase 87.84
PLN02432293 putative pectinesterase 86.65
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 85.77
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 84.43
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 84.01
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 83.08
PLN02506537 putative pectinesterase/pectinesterase inhibitor 83.06
PLN02682369 pectinesterase family protein 82.27
PLN02713 566 Probable pectinesterase/pectinesterase inhibitor 82.19
PLN02301 548 pectinesterase/pectinesterase inhibitor 82.08
PRK10531422 acyl-CoA thioesterase; Provisional 80.93
PLN02671359 pectinesterase 80.65
PLN02933 530 Probable pectinesterase/pectinesterase inhibitor 80.58
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 80.52
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 80.31
>PLN02155 polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=6.8e-62  Score=423.35  Aligned_cols=244  Identities=51%  Similarity=0.990  Sum_probs=225.0

Q ss_pred             CceecccccCCCCcchHHHHHHHHHHHhhcCCCcEEEecCceeEEEeEEeeccCCCCCeEEEECCEEEeeccccccCCCc
Q 036371            1 YNVLRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKGRYLLGYVAFNGDCKSSDITFRIDGTLVAPADYCVLGQAD   80 (245)
Q Consensus         1 ~~v~~~Ga~~dg~tddt~Aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g~l~~~~~~~~~~~~~   80 (245)
                      |||++|||+|||++|||+|||+||++||++.+|++|+||+|+|++++|.|.|+||| +++|+++|+|++++++..|....
T Consensus        28 ~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcks-nv~l~l~G~l~~~~d~~~~~~~~  106 (394)
T PLN02155         28 FNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKS-KITFQVAGTVVAPEDYRTFGNSG  106 (394)
T ss_pred             EEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCC-CceEEEeeEEECccccccccccc
Confidence            68999999999999999999999987788889999999999999999999999999 99999999999998888886555


Q ss_pred             ceEEEcCeeceEEEccEEeCCCCcccccccCCCCCCCCceEEE---EecEEEEeeEEecCCCeEEEEeCcccEEEEeEEE
Q 036371           81 NWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATLYQ---LQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTV  157 (245)
Q Consensus        81 ~~i~~~~~~nv~I~Gg~idG~g~~~w~~~~~~~~~~~~~~~~~---~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i  157 (245)
                      .|+.+.+.+++.|+||+|||+|+.||.....+..++.+|+++.   |+|++|++++++|+|.|++++..|++++|++++|
T Consensus       107 ~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~nv~i~~v~I  186 (394)
T PLN02155        107 YWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKL  186 (394)
T ss_pred             eeEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEECeeeEEEEEEEE
Confidence            6899999999999999999999999986544344444443333   9999999999999999999999999999999999


Q ss_pred             ECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCCeeEEEEeeEEcCCceEEEeccCcCCCCCCeEEEEEEeEEE
Q 036371          158 IAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRTVF  237 (245)
Q Consensus       158 ~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~Gi~igs~g~~~~~~~~~ni~i~n~~~  237 (245)
                      .++.+++|+|||++.+|++|+|+||+|.++||||+++++++||+|+||+|.++||++|||+|++.+.+.|+||+|+||+|
T Consensus       187 ~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~v~n~~~  266 (394)
T PLN02155        187 VAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVENVTVSSSVF  266 (394)
T ss_pred             ECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCCcEEEEEEEeeEE
Confidence            99998999999999999999999999999999999999999999999999999999999999887678899999999999


Q ss_pred             ECCccccC
Q 036371          238 TGTQNGLL  245 (245)
Q Consensus       238 ~~~~~g~~  245 (245)
                      .++.+|++
T Consensus       267 ~~t~~Gir  274 (394)
T PLN02155        267 TGSQNGVR  274 (394)
T ss_pred             eCCCcEEE
Confidence            99999874

>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
2iq7_A 339 Crystal Structure Of The Polygalacturonase From Col 4e-09
1nhc_A 336 Structural Insights Into The Processivity Of Endopo 6e-09
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 3e-08
1ia5_A 339 Polygalacturonase From Aspergillus Aculeatus Length 2e-07
1k5c_A 335 Endopolygalacturonase I From Stereum Purpureum At 0 1e-06
1czf_A 362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 1e-06
1rmg_A 422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 7e-06
1hg8_A 349 Endopolygalacturonase From The Phytopathogenic Fung 2e-05
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure 
Iteration: 1

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 91/201 (45%), Gaps = 19/201 (9%)
Query: 58  DITFRIDGTLVAPADYCVLGQADNW----LSFEG----VSGVSIIGGALDAKGSSLWACK 109
           D+T    GT V        G  + W    +SF G    ++G S  G ++D +GS  W  K
Sbjct: 35  DMTGLKSGTTVTFQGKTTFGYKE-WEGPLISFSGTNININGAS--GHSIDCQGSRWWDSK 91
Query: 110 AS--GTNCPDGATLYQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVI-APGNSP-- 164
            S  G   P     + L++  I GL  LN+ +    IN    + +  V +  + G+S   
Sbjct: 92  GSNGGKTKPKFFYAHSLKSSNIKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDSAGG 151
Query: 165 -NTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMN 223
            NTD   V  ST   I    +K  DDC+ I  GT N+     TC   HG+SIGS+G   +
Sbjct: 152 HNTDAFDVGSSTGVYISGANVKNQDDCLAINSGT-NITFTGGTCSGGHGLSIGSVG-GRS 209
Query: 224 DEGVQNVTVIRTVFTGTQNGL 244
           D  V+ VT+  +    + NG+
Sbjct: 210 DNTVKTVTISNSKIVNSDNGV 230
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
1czf_A 362 Polygalacturonase II; beta helix, hydrolase; HET: 6e-71
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-69
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 5e-65
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 8e-61
1ia5_A 339 Polygalacturonase; glycosylhydrolase, hydrolase; H 2e-60
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 4e-59
1nhc_A 336 Polygalacturonase I; beta-helix, hydrolase; HET: M 9e-58
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 2e-54
1k5c_A 335 Endopolygalacturonase; beta helical structure, gly 2e-53
1hg8_A 349 Endopolygalacturonase; hydrolase, pectin degradati 2e-52
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 1e-25
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 6e-23
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 2e-22
1x0c_A 549 Isopullulanase; glycoside hydrolase family 49, gly 7e-14
2pyg_A 377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 2e-13
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 6e-12
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 2e-08
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 4e-06
1ogo_X 574 Dextranase; hydrolase, dextran degradation, glycos 1e-05
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
 Score =  220 bits (562), Expect = 6e-71
 Identities = 58/249 (23%), Positives = 94/249 (37%), Gaps = 16/249 (6%)

Query: 1   YNVLRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKGRYLLGYVAFNGDCKSSDIT 60
           +         +    +T A AKA  A C++     I VP G  L       G        
Sbjct: 18  FASASPIEARDSCTFTTAAAAKAGKAKCSTITLNNIEVPAGTTLD----LTGLTSG--TK 71

Query: 61  FRIDGTLVAPADYCVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKAS-GTNCPDGA 119
              +GT     +          +S E ++     G  ++  G+  W  K + G   P   
Sbjct: 72  VIFEGTTTFQYEEW--AGPLISMSGEHITVTGASGHLINCDGARWWDGKGTSGKKKPKFF 129

Query: 120 TLYQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNS----PNTDGIHVQLST 175
             + L +  I GL   N+ +    +    D+    VT+           NTD   V  S 
Sbjct: 130 YAHGLDSSSITGLNIKNTPLMAFSVQ-ANDITFTDVTINNADGDTQGGHNTDAFDVGNSV 188

Query: 176 NAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRT 235
              I+   +   DDC+ +  G  N+W    TC   HG+SIGS+G   N+  V+NVT+  +
Sbjct: 189 GVNIIKPWVHNQDDCLAVNSGE-NIWFTGGTCIGGHGLSIGSVGDRSNN-VVKNVTIEHS 246

Query: 236 VFTGTQNGL 244
             + ++N +
Sbjct: 247 TVSNSENAV 255
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
3jur_A 448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1czf_A 362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A 336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1ia5_A 339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1hg8_A 349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1k5c_A 335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 100.0
1x0c_A 549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X 574 Dextranase; hydrolase, dextran degradation, glycos 100.0
2pyg_A 377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.91
2inu_A 410 Insulin fructotransferase; right-handed parallel b 99.76
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.73
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.72
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.71
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.7
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.69
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.68
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.66
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.64
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.59
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.57
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.56
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.55
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.55
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.34
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.27
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.13
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.12
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.08
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.94
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.78
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.76
1pxz_A 346 Major pollen allergen JUN A 1; parallel beta-helix 98.73
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.62
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.61
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.58
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.58
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.54
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 98.51
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 98.47
1vbl_A 416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.46
1air_A 353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.44
2o04_A 399 Pectate lyase, PL; hexasaccharide compound II, cal 98.42
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.42
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.34
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.31
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.3
1pe9_A 361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.22
1idk_A 359 Pectin lyase A; signal, glycoprotein, multigene fa 98.19
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.18
1qcx_A 359 Pectin lyase B; beta-helix protein, plant cell WAL 98.08
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.05
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 98.02
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.86
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.86
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.84
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.81
1pcl_A 355 Pectate lyase E; lyase (acting on polysaccharides) 97.72
1vbl_A 416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.52
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.47
3grh_A 422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 97.33
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.17
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 96.65
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.22
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 95.88
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 95.47
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 93.92
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 93.85
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 93.74
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 93.65
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 92.38
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 85.03
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 82.54
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=9e-54  Score=380.02  Aligned_cols=233  Identities=27%  Similarity=0.440  Sum_probs=206.2

Q ss_pred             CceecccccCCCCcchHHHHHHHHHHHhhcCCCcEEEecCceeEEEeEEeeccCCCCCeEEEECCEEEeecccccc-CC-
Q 036371            1 YNVLRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKGRYLLGYVAFNGDCKSSDITFRIDGTLVAPADYCVL-GQ-   78 (245)
Q Consensus         1 ~~v~~~Ga~~dg~tddt~Aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~~l~l~~~~~s~~~~l~~~g~l~~~~~~~~~-~~-   78 (245)
                      |||++|||+|||++|||+|||+||++ |++.++++|+||+|+|++++|.|+    | +++|+++|+|++++++..| +. 
T Consensus        28 ~~v~~~GA~gdg~tddt~Aiq~Ai~~-c~~~ggg~v~vP~G~yl~~~l~l~----s-~v~l~l~gtL~~s~d~~~y~p~~  101 (448)
T 3jur_A           28 VNLLDFGARGDGRTDCSESFKRAIEE-LSKQGGGRLIVPEGVFLTGPIHLK----S-NIELHVKGTIKFIPDPERYLPVV  101 (448)
T ss_dssp             EEGGGGTCCCEEEEECHHHHHHHHHH-HHHHTCEEEEECSSEEEESCEECC----T-TEEEEESSEEEECCCGGGGCSCE
T ss_pred             EEEEecccCCCCCeecHHHHHHHHHh-hhhcCCeEEEECCCcEEEeeeEeC----C-CcEEEEEEEEEecCCHHHhCccc
Confidence            58999999999999999999999985 566789999999999999999997    7 9999999999999999888 31 


Q ss_pred             -----------CcceEEEcCeeceEEEc-cEEeCCC--CcccccccC---------------------------------
Q 036371           79 -----------ADNWLSFEGVSGVSIIG-GALDAKG--SSLWACKAS---------------------------------  111 (245)
Q Consensus        79 -----------~~~~i~~~~~~nv~I~G-g~idG~g--~~~w~~~~~---------------------------------  111 (245)
                                 ..+||.+.+++||.|+| |+|||+|  +.||.....                                 
T Consensus       102 ~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~  181 (448)
T 3jur_A          102 LTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERV  181 (448)
T ss_dssp             EEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHHHTCCGGGCB
T ss_pred             ccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhhcccCcchhhh
Confidence                       13689999999999999 9999999  889974321                                 


Q ss_pred             -CCCCCCCceEEE---EecEEEEeeEEecCCCeEEEEeCcccEEEEeEEEECCCCCCCCCeeeccCeecEEEEecEEeeC
Q 036371          112 -GTNCPDGATLYQ---LQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTG  187 (245)
Q Consensus       112 -~~~~~~~~~~~~---~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~  187 (245)
                       +.....+|.++.   |+|++|++++++|+|.|++++..|++++|++++|.++  ++++|||++.+|++|+|+||+|.++
T Consensus       182 ~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~I~n~~i~~g  259 (448)
T 3jur_A          182 FGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIEKCRFDTG  259 (448)
T ss_dssp             CSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEEEESCEEEES
T ss_pred             ccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEEEEeeEEEeC
Confidence             011224455444   9999999999999999999999999999999999997  6799999999999999999999999


Q ss_pred             CeeEEecCC-----------CeeEEEEeeEE--cCCc-eEEEeccCcCCCCCCeEEEEEEeEEEECCccccC
Q 036371          188 DDCIPIGPG-----------TKNLWIERVTC--GPAH-GISIGSLGKDMNDEGVQNVTVIRTVFTGTQNGLL  245 (245)
Q Consensus       188 dD~i~i~~~-----------~~ni~i~n~~~--~~~~-Gi~igs~g~~~~~~~~~ni~i~n~~~~~~~~g~~  245 (245)
                      ||||+++++           ++||+|+||+|  ..+| ||+|||++    .+.++||+|+||+|.++.+|++
T Consensus       260 DDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~----~~~v~nV~v~n~~~~~t~~Gir  327 (448)
T 3jur_A          260 DDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEM----SGGVRNVVARNNVYMNVERALR  327 (448)
T ss_dssp             SEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSC----TTCEEEEEEESCEEESCSEEEE
T ss_pred             CCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcc----cCcEEEEEEEEEEEecccceEE
Confidence            999999998           89999999999  5666 89999994    5689999999999999998873
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 245
d1ogmx2 373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 3e-45
d1rmga_ 422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 1e-44
d1czfa_ 335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 6e-43
d1ia5a_ 339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 8e-38
d1k5ca_ 333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 4e-34
d1nhca_ 336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-31
d1hg8a_ 349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 9e-27
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 2e-25
d1o88a_ 353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 0.004
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Dextranase, catalytic domain
domain: Dextranase, catalytic domain
species: Penicillium minioluteum [TaxId: 28574]

 Score =  153 bits (387), Expect = 3e-45
 Identities = 35/259 (13%), Positives = 64/259 (24%), Gaps = 28/259 (10%)

Query: 4   LRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKGRYLLGYVAFNGDCKSSDITFRI 63
           L  G   +   D+TQ               + +  P G Y +       D   +      
Sbjct: 1   LPSGMIPHMTPDNTQTMTPGPINNGDWGAKSILYFPPGVYWMN-----QDQSGNSGKLGS 55

Query: 64  DGTLVAPADYCVLGQADN----WLSFEGVSGVSIIGGA-LDAKGSSLWACKAS------- 111
           +   +    Y V           + +         G   L  +     A           
Sbjct: 56  NHIRLNSNTYWVYLAPGAYVKGAIEYFTKQNFYATGHGILSGENYVYQANAGDNYIAVKS 115

Query: 112 GTNCPDGATL---YQLQNIRINGLLSLNSQMFHIVINGCKDVHIEGVTV-IAPGNSPNTD 167
            +              Q     G          +  NG   +  +             TD
Sbjct: 116 DSTSLRMWWHNNLGGGQTWYCVGPTINAPPFNTMDFNGNSGISSQISDYKQVGAFFFQTD 175

Query: 168 GIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVT---CGPAHGISIGSLGKDMND 224
           G  +    N+ + +      DD I I        + R T   C     I +G   +D++ 
Sbjct: 176 GPEI--YPNSVVHDVFWHVNDDAIKIYYS--GASVSRATIWKCHNDPIIQMGWTSRDISG 231

Query: 225 EGVQNVTVIRTVFTGTQNG 243
             +  + VI T +  ++  
Sbjct: 232 VTIDTLNVIHTRYIKSETV 250
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1czfa_ 335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1ia5a_ 339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1hg8a_ 349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1nhca_ 336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1k5ca_ 333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2 373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.7
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.65
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.64
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.63
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.62
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.62
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.47
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.39
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.36
d1o88a_ 353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.79
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.76
d1pxza_ 346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.63
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.47
d1pcla_ 355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 98.16
d1qcxa_ 359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 98.15
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 98.11
d1bn8a_ 399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.98
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.94
d1qjva_ 342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 97.9
d1pe9a_ 361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.76
d1qcxa_ 359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.69
d1idka_ 359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.61
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.56
d1o88a_ 353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.47
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.37
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.08
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 96.34
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.32
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 93.27
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 91.93
d1gq8a_ 319 Pectin methylesterase PemA {Carrot (Daucus carota) 90.39
d1v0ea1 516 Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34 90.06
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 84.97
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=5.2e-48  Score=339.55  Aligned_cols=225  Identities=22%  Similarity=0.407  Sum_probs=189.5

Q ss_pred             CceecccccCCCCcchHHHHHHHHHHHhhcCCCcEEEecCceeEEE-eEEeeccCCCCCeEEEECCEEEeeccccccCCC
Q 036371            1 YNVLRFGAKGNGVADSTQAFAKAWAAACASTESATINVPKGRYLLG-YVAFNGDCKSSDITFRIDGTLVAPADYCVLGQA   79 (245)
Q Consensus         1 ~~v~~~Ga~~dg~tddt~Aiq~Ai~~a~~~~~g~~v~ip~G~Y~~~-~l~l~~~~~s~~~~l~~~g~l~~~~~~~~~~~~   79 (245)
                      |||+||||+|||++|||+|||+||+ ||+  .+++|+||+|+|++. ++.|+++  + ++.|+++|+|+++.....+.  
T Consensus        21 ~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~--~gg~V~iP~Gty~l~~~i~l~g~--~-~~~l~~~G~i~~~~~~~~~~--   92 (422)
T d1rmga_          21 CNILSYGAVADNSTDVGPAITSAWA-ACK--SGGLVYIPSGNYALNTWVTLTGG--S-ATAIQLDGIIYRTGTASGNM--   92 (422)
T ss_dssp             EEGGGGTCCCSSSSBCHHHHHHHHH-HHT--BTCEEEECSSEEEECSCEEEESC--E-EEEEEECSEEEECCCCSSEE--
T ss_pred             EEEecCCCCCCCCccCHHHHHHHHH-hcC--CCCEEEECCCcEEEeCcEEEcCC--C-ceEEEEeEEEEeccCCccCE--
Confidence            6899999999999999999999997 565  488999999999776 6899875  5 78999999998876554331  


Q ss_pred             cceEEEcCeeceEEEc-cEEeCCCCcccccccCCCCCCCCceEEE---EecEEEEeeEEecCCCeEEEEeCcccEEEEeE
Q 036371           80 DNWLSFEGVSGVSIIG-GALDAKGSSLWACKASGTNCPDGATLYQ---LQNIRINGLLSLNSQMFHIVINGCKDVHIEGV  155 (245)
Q Consensus        80 ~~~i~~~~~~nv~I~G-g~idG~g~~~w~~~~~~~~~~~~~~~~~---~~nv~i~~v~i~n~~~~~i~~~~~~~i~i~n~  155 (245)
                      ..+....+.+.+.+.| |+|||+|..||.....      ++.+++   |+|+.|++++++|+|.||+.+..|++++|+|+
T Consensus        93 ~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~~~------~p~~l~~~~~~n~~i~git~~nsp~~~i~i~~c~~v~i~nv  166 (422)
T d1rmga_          93 IAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTY------GARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNM  166 (422)
T ss_dssp             EEEEEEEEEEEECSSSCCEEECCTHHHHTTTCC------CCEEEEEEEEEEEEEEEEEEECCSSCSEEEEEEEEEEEEEE
T ss_pred             EEeccCccEEEEEeecceEEecCcceecCCCCC------CCcEEEEEeeeeeEEECcEecCCCceEEEEeccccEEEEee
Confidence            1122333344455566 9999999999964322      244333   99999999999999999999999999999999


Q ss_pred             EEECCCCCCCCCeeeccCeecEEEEecEEeeCCeeEEecCCCeeEEEEeeEEcCCceEEEeccCcCCCCCCeEEEEEEeE
Q 036371          156 TVIAPGNSPNTDGIHVQLSTNAKIMNCTIKTGDDCIPIGPGTKNLWIERVTCGPAHGISIGSLGKDMNDEGVQNVTVIRT  235 (245)
Q Consensus       156 ~i~~~~~~~~~dGi~~~~s~~v~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~Gi~igs~g~~~~~~~~~ni~i~n~  235 (245)
                      +|.++ +.+++|||++.+ ++|+|+||++.++||||+++++++||+|+|++|..+||++|||+|.+   ..++||+|+||
T Consensus       167 ~I~~~-~~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~~---~~V~nV~v~n~  241 (422)
T d1rmga_         167 AIRGG-NEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD---TDVTDIVYRNV  241 (422)
T ss_dssp             EEECC-SSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECTT---EEEEEEEEEEE
T ss_pred             EEcCC-CCCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccCC---CCEEEEEEEeE
Confidence            99986 467999999975 58999999999999999999999999999999999999999999754   46999999999


Q ss_pred             EEECCcccc
Q 036371          236 VFTGTQNGL  244 (245)
Q Consensus       236 ~~~~~~~g~  244 (245)
                      ++.++.+|+
T Consensus       242 ~~~~s~~g~  250 (422)
T d1rmga_         242 YTWSSNQMY  250 (422)
T ss_dssp             EEESSSCSE
T ss_pred             EEeCCCceE
Confidence            999988775
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure