Citrus Sinensis ID: 036374
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 706 | 2.2.26 [Sep-21-2011] | |||||||
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.964 | 0.931 | 0.448 | 1e-162 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.978 | 0.922 | 0.399 | 1e-132 | |
| O65351 | 757 | Subtilisin-like protease | no | no | 0.900 | 0.840 | 0.391 | 1e-124 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.927 | 0.845 | 0.352 | 8e-97 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.600 | 0.526 | 0.235 | 1e-17 | |
| P00782 | 382 | Subtilisin BPN' OS=Bacill | no | no | 0.113 | 0.209 | 0.333 | 0.0002 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.524 | 0.312 | 0.258 | 0.0003 | |
| O31788 | 442 | Serine protease AprX OS=B | no | no | 0.144 | 0.230 | 0.330 | 0.0005 | |
| Q8NZ80 | 1150 | C5a peptidase OS=Streptoc | N/A | no | 0.492 | 0.302 | 0.256 | 0.0006 | |
| P58099 | 1181 | C5a peptidase OS=Streptoc | N/A | no | 0.488 | 0.292 | 0.254 | 0.0008 |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 573 bits (1477), Expect = e-162, Method: Compositional matrix adjust.
Identities = 319/711 (44%), Positives = 435/711 (61%), Gaps = 30/711 (4%)
Query: 2 QVCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQNR 61
+ IVYMG S HH ++L++ + + A + ++ +Y+RSFNGFA KLT+EE +
Sbjct: 32 NIYIVYMGRKLEDPDSAHLHHRAMLEQVVGSTFAPESVLHTYKRSFNGFAVKLTEEEAEK 91
Query: 62 ISRMDGIVSVFPSKTLQLQTTRSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFD 121
I+ M+G+VSVF ++ +L TTRSWDF+GFP TV R VES++++GVLD GIWPES FD
Sbjct: 92 IASMEGVVSVFLNEMNELHTTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFD 151
Query: 122 DKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYY--------SGINTTREYQLGHGTHMA 173
D+ F PPP KWKG C+ NF CN KIIGAR Y +N R+ GHGTH A
Sbjct: 152 DEGFSPPPPKWKG-TCETSNNFRCNRKIIGARSYHIGRPISPGDVNGPRDTN-GHGTHTA 209
Query: 174 SIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP--CNEADILAAFDDAIADG 231
S AAG LV A+ GL G RG VP ARIAAY+VC W C++ DILAA+DDAIADG
Sbjct: 210 STAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVC---WNDGCSDTDILAAYDDAIADG 266
Query: 232 VDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVA 291
VDII + DA+AIG+FHA+E+GILT+ GN GP +T ++PW+L+VA
Sbjct: 267 VDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVA 326
Query: 292 GSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFC 351
S++DR F+ + +G+G + G ++N F +PL G+ + + SR C+
Sbjct: 327 ASTMDRKFVTQVQIGNGQSFQGVSINTF--DNQYYPLVSGRDIPNTGFDKSTSRFCTDKS 384
Query: 352 LDENLVKGKILLCDNFRGDVETFRV--GALGSIQPASTI-MSHPTPFPTVILKMEDFERV 408
++ NL+KGKI++C+ G E F+ GA G + ++T + P P+ +L D
Sbjct: 385 VNPNLLKGKIVVCEASFGPHEFFKSLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLAT 444
Query: 409 KLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYT 468
YI S P I +S I + +APVV FS RGP++ T D+IKPDIS P V+ILAA+
Sbjct: 445 LRYIYSIRSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAW- 503
Query: 469 GGWGPSNHPMD--HRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTAL 526
PS P+ R +NI+SGTS++ G A YV++++P WSP++IKSALMTTA
Sbjct: 504 ----PSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTAS 559
Query: 527 LMNGTVNRGREFDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNS 586
MN N EF YGSGH++P+KA PGLVY+ E DY+K LCG GY+ +R I+GD S
Sbjct: 560 PMNARFNPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYS 619
Query: 587 SCPEGTSIATKDLNLPSIAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKTTSIDVKIN 646
+C G + DLN PS V F+ F RT+T+V +TY+A + + I+
Sbjct: 620 ACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQ-GLTIS 678
Query: 647 VTPDALSFESVNDKKSFVVTVDGAILQANHTVSASLLWSDGTHNVRSPIVV 697
V P+ LSF + D+KSF +TV G+I VSASL+WSDG H VRSPI +
Sbjct: 679 VNPNVLSFNGLGDRKSFTLTVRGSI--KGFVVSASLVWSDGVHYVRSPITI 727
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Cucumis melo (taxid: 3656) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 2EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 472 bits (1215), Expect = e-132, Method: Compositional matrix adjust.
Identities = 284/711 (39%), Positives = 398/711 (55%), Gaps = 20/711 (2%)
Query: 5 IVYMGSLPAGEYSPLAHHLSVLQE-GIQDSLANDVLVRSYERSFNGFAAKLTDEEQNRIS 63
I+Y+G P + H+++L I A + V SY ++FN FAAKL+ E ++
Sbjct: 39 IIYLGDRPDNTEETIKTHINLLSSLNISQEEAKERKVYSYTKAFNAFAAKLSPHEAKKMM 98
Query: 64 RMDGIVSVFPSKTLQLQTTRSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDK 123
M+ +VSV ++ +L TT+SWDF+G P T KR E D+IIGVLD GI P+S+ F D
Sbjct: 99 EMEEVVSVSRNQYRKLHTTKSWDFVGLPLTAKRHLKAERDVIIGVLDTGITPDSESFLDH 158
Query: 124 SFGPPPKKWKGGACKGGQNFT-CNNKIIGARYYSGINTTREYQL-------GHGTHMASI 175
GPPP KWKG +C +NFT CNNKIIGA+Y+ ++ GHGTH +S
Sbjct: 159 GLGPPPAKWKG-SCGPYKNFTGCNNKIIGAKYFKHDGNVPAGEVRSPIDIDGHGTHTSST 217
Query: 176 AAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDII 235
AG LV AS G+A G RGAVPSAR+A Y+VC C + DILA F+ AI DGV+II
Sbjct: 218 VAGVLVANASLYGIANGTARGAVPSARLAMYKVCWARSGCADMDILAGFEAAIHDGVEII 277
Query: 236 LTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSI 295
A D++ D++++G+FHAM KGILT GN GP + PWILTVA S I
Sbjct: 278 SISIGGPIA-DYSSDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGI 336
Query: 296 DRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDEN 355
DR F K LG+G + G ++ F+ K +PL G A + +R C LD
Sbjct: 337 DRTFKSKIDLGNGKSFSGMGISMFSPKAKSYPLVSGVDAAKNTDDKYLARYCFSDSLDRK 396
Query: 356 LVKGKILLCDNFRGDVETF--RVGALGSIQPASTIMSHPTPF--PTVILKMEDFERVKLY 411
VKGK+++C G VE+ G G+I + + + F P + + + Y
Sbjct: 397 KVKGKVMVCRMGGGGVESTIKSYGGAGAIIVSDQYLDNAQIFMAPATSVNSSVGDIIYRY 456
Query: 412 INSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGW 471
INST I ++ + AP V FS RGP+ + ++KPDI+AP + ILAA+T
Sbjct: 457 INSTRSASAVIQKTRQVTI-PAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKR 515
Query: 472 GPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGT 531
+ D +F K+ ILSGTS+A AG AAYV+SFHPDW+P++IKSA++T+A ++
Sbjct: 516 SLTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSAKPISRR 575
Query: 532 VNRGREFDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNS-SCPE 590
VN+ EF YG G I+P +A +PGLVY++ + Y++ LCG GY+ + + G S SC
Sbjct: 576 VNKDAEFAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSS 635
Query: 591 GT-SIATKDLNLPSIAAQVEVHNPFSIK-FLRTVTNVGLANTTYKAEVKTTSIDVKINVT 648
+ LN P+I + ++ F R VTNVG ++ Y A V+ V+I V
Sbjct: 636 IVPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPK-GVEITVE 694
Query: 649 PDALSFESVNDKKSFVVTVDGAILQANHTVSASLLWSDGTHNVRSPIVVYT 699
P +LSF + K+SF V V + VS L+W H+VRSPIV+Y+
Sbjct: 695 PQSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPIVIYS 745
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 446 bits (1147), Expect = e-124, Method: Compositional matrix adjust.
Identities = 279/713 (39%), Positives = 390/713 (54%), Gaps = 77/713 (10%)
Query: 39 LVRSYERSFNGFAAKLTDEEQNRISRMDGIVSVFPSKTLQLQTTRSWDFMGFPETVKR-- 96
L+ +YE + +GF+ +LT EE + + G++SV P +L TTR+ F+G E
Sbjct: 65 LLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLF 124
Query: 97 -EPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFT---CNNKIIGA 152
E SD+++GVLD G+WPES + D+ FGP P WKGG C+ G NFT CN K+IGA
Sbjct: 125 PEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGG-CEAGTNFTASLCNRKLIGA 183
Query: 153 RYYSG--------INTTREYQL-----GHGTHMASIAAGNLVVGASFDGLAKGNVRGAVP 199
R+++ I+ ++E + GHGTH +S AAG++V GAS G A G RG P
Sbjct: 184 RFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAP 243
Query: 200 SARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHA 259
AR+A Y+VC + C +DILAA D AIAD V+++ G + D+ D VAIGAF A
Sbjct: 244 RARVAVYKVC-WLGGCFSSDILAAIDKAIADNVNVLSMSLGGGMS-DYYRDGVAIGAFAA 301
Query: 260 MEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVG------ 313
ME+GIL + GN GP +S VAPWI TV ++DR F AILG+G G
Sbjct: 302 MERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKG 361
Query: 314 ----DAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDN--- 366
D + PF GN + G C L VKGKI++CD
Sbjct: 362 EALPDKLLPFIYAGNASNATNGNL-------------CMTGTLIPEKVKGKIVMCDRGIN 408
Query: 367 ---FRGDVETFRVGALGSIQPASTIM-------SHPTPFPTVILKMEDFERVKLYINSTE 416
+GDV G +G I + +H P TV K D ++ Y+ +
Sbjct: 409 ARVQKGDV-VKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDI--IRHYVTTDP 465
Query: 417 KPQVHI-LRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSN 475
P I + + +PVV FS RGP+ ITP+I+KPD+ AP V ILAA+TG GP+
Sbjct: 466 NPTASISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTG 525
Query: 476 HPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTA---------L 526
D R V++NI+SGTS++ +G AA ++S HP+WSP++I+SALMTTA L
Sbjct: 526 LASDSRRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPL 585
Query: 527 LMNGTVNRGREFDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNS 586
L T FD+G+GH+ P ATNPGL+Y++ DY+ LC + Y+ +IR +S N
Sbjct: 586 LDIATGKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNY 645
Query: 587 SCPEGTSIATKDLNLPSIAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKTTSIDVKIN 646
+C S + DLN PS A V+ + K+ RTVT+VG A TY +V + + VKI+
Sbjct: 646 TCDPSKSYSVADLNYPSFAVNVDGVGAY--KYTRTVTSVGGAG-TYSVKVTSETTGVKIS 702
Query: 647 VTPDALSFESVNDKKSFVV--TVDGAILQANHTVSASLLWSDGTHNVRSPIVV 697
V P L+F+ N+KKS+ V TVD + +++ S+ WSDG H V SP+ +
Sbjct: 703 VEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSF-GSIEWSDGKHVVGSPVAI 754
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 355 bits (910), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 262/743 (35%), Positives = 365/743 (49%), Gaps = 88/743 (11%)
Query: 22 HLSVLQEGI-----QDSLANDVLVRSYERSFNGFAAKLTDEEQNRISRMDGIVSVFPSKT 76
HLS LQE + ++ + L+ SY + GFAA+LT+ E + +V+V P
Sbjct: 49 HLSFLQEAVLGVEEEEEEPSSRLLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHV 108
Query: 77 LQLQTTRSWDFMGFP----ETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKW 132
LQ+QTT S+ F+G V + IIGVLD G+WPES FDD P+KW
Sbjct: 109 LQVQTTYSYKFLGLDGFGNSGVWSKSRFGQGTIIGVLDTGVWPESPSFDDTGMPSIPRKW 168
Query: 133 KGGACKGGQNFT---CNNKIIGARYY-----------SGINTTREY-----QLGHGTHMA 173
KG C+ G++F+ CN K+IGAR++ N REY GHGTH A
Sbjct: 169 KG-ICQEGESFSSSSCNRKLIGARFFIRGHRVANSPEESPNMPREYISARDSTGHGTHTA 227
Query: 174 SIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVD 233
S G+ V A+ G G RG P A IA Y+VC + C +DILAA D AI D VD
Sbjct: 228 STVGGSSVSMANVLGNGAGVARGMAPGAHIAVYKVCWFN-GCYSSDILAAIDVAIQDKVD 286
Query: 234 IILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGS 293
+ L+ + GF +D +AIG F AME+GI GN GP +S APW+ T+
Sbjct: 287 V-LSLSLGGFPIPLYDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAG 345
Query: 294 SIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSEL---ASRQCSLF 350
++DR F L +G L G+++ P G NA + + S F
Sbjct: 346 TLDRRFPAVVRLANGKLLYGESLYP----------GKGIKNAGREVEVIYVTGGDKGSEF 395
Query: 351 CLDENL----VKGKILLCD---NFRGDV--ETFRVGALGSI-------QPASTIMSHPTP 394
CL +L ++GK+++CD N R + G + I Q +I H
Sbjct: 396 CLRGSLPREEIRGKMVICDRGVNGRSEKGEAVKEAGGVAMILANTEINQEEDSIDVHL-- 453
Query: 395 FPTVILKMEDFERVKLYINSTEKPQVHIL-RSMAIKDDAAPVVHPFSGRGPSKITPDIIK 453
P ++ + +K Y+N+T KP+ I+ I AP V FS RGPS P I+K
Sbjct: 454 LPATLIGYTESVLLKAYVNATVKPKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILK 513
Query: 454 PDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWS 513
PD+ AP V I+AA+ GP+ P D R V + ++SGTS++ +G A +RS +P+WS
Sbjct: 514 PDMIAPGVNIIAAWPQNLGPTGLPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWS 573
Query: 514 PSSIKSALMTTALLMN---GTVNRGRE----FDYGSGHIDPVKATNPGLVYEVLEGDYIK 566
P++IKSALMTTA L + + G + F G+GH++P KA NPGLVY + DYI
Sbjct: 574 PAAIKSALMTTADLYDRQGKAIKDGNKPAGVFAIGAGHVNPQKAINPGLVYNIQPVDYIT 633
Query: 567 MLCGMGYSVNKIRLISGDNSSCPEGTSIATKD----LNLPSIAAQVEVHNPFSIKFLRTV 622
LC +G++ + I I+ N SC I K+ LN PSIA + + R V
Sbjct: 634 YLCTLGFTRSDILAITHKNVSC---NGILRKNPGFSLNYPSIAVIFKRGKTTEM-ITRRV 689
Query: 623 TNVGLANTTYKAEVKTTSIDVKINVTPDALSFESVNDKKS----FVVTVDGAILQANHTV 678
TNVG N+ Y VK +K+ V P L F+ V+ S FV+ +
Sbjct: 690 TNVGSPNSIYSVNVKAPE-GIKVIVNPKRLVFKHVDQTLSYRVWFVLKKKNRGGKVASFA 748
Query: 679 SASLLWSDGTHN----VRSPIVV 697
L W + +HN VRSPI V
Sbjct: 749 QGQLTWVN-SHNLMQRVRSPISV 770
|
Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 129/547 (23%), Positives = 222/547 (40%), Gaps = 123/547 (22%)
Query: 33 SLANDVLVRSYERSFNGFAAKLTDEEQNRISRMDGIVSVFPSKTLQLQTTRSWDFMGFPE 92
++ N + R YE+ F+GF+ KL E ++ + + +V+P+ T + + D +
Sbjct: 96 AVKNGKVNREYEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKDVTISED 155
Query: 93 TVKRE-----PTVESD-----------MIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGA 136
V + P + ++ + + ++D G+ + P K G
Sbjct: 156 AVSPQMDDSAPYIGANDAWDLGYTGKGIKVAIIDTGV----------EYNHPDLKKNFGQ 205
Query: 137 CKGGQNFTCNNKIIGARYYSGINTT----REYQLGHGTHMASIAAGNLVVGASFDGLAKG 192
KG +F N+ Y T R HGTH+A A N G
Sbjct: 206 YKG-YDFVDND-------YDPKETPTGDPRGEATDHGTHVAGTVAAN------------G 245
Query: 193 NVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAV 252
++G P A + AYRV +++A + A+ DG D++ + G + + + A
Sbjct: 246 TIKGVAPDATLLAYRVLGPGGSGTTENVIAGVERAVQDGADVM--NLSLGNSLNNPDWAT 303
Query: 253 AIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLV 312
+ AM +G++ GN GP G ++ P + + G T +
Sbjct: 304 STALDWAMSEGVVAVTSNGNSGPN---------------GWTVGSPGTSREAISVGATQL 348
Query: 313 GDAVNPFTMKGNKFPLSYGKTNASYPCSELA--SRQCSLFCLDEN---LVKGKILLCDNF 367
P N++ +++G SY +++ +++ + L+ LV+ I +F
Sbjct: 349 -----PL----NEYAVTFG----SYSSAKVMGYNKEDDVKALNNKEVELVEAGIGEAKDF 395
Query: 368 RGDVETFRV--------------------GALGSI--QPASTIMSHPTP---FPTVILKM 402
G T +V GA+G + S + P PT+ L +
Sbjct: 396 EGKDLTGKVAVVKRGSIAFVDKADNAKKAGAIGMVVYNNLSGEIEANVPGMSVPTIKLSL 455
Query: 403 EDFERVKLYINSTE-KPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAV 461
ED E++ + + E K + S A+ + A FS RGP T +IKPDISAP V
Sbjct: 456 EDGEKLVSALKAGETKTTFKLTVSKALGEQVAD----FSSRGPVMDTW-MIKPDISAPGV 510
Query: 462 QILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSAL 521
I++ P++ P DH + Y GTS+AS AGA A ++ P WS IK+A+
Sbjct: 511 NIVSTI-----PTHDP-DHPY-GYGSKQGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAI 563
Query: 522 MTTALLM 528
M TA+ +
Sbjct: 564 MNTAVTL 570
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P00782|SUBT_BACAM Subtilisin BPN' OS=Bacillus amyloliquefaciens GN=apr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 22/102 (21%)
Query: 445 SKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAY 504
S + P++ D+ AP V I + G KY +GTS+AS AGAAA
Sbjct: 297 SSVGPEL---DVMAPGVSIQSTLPGN-------------KYGAYNGTSMASPHVAGAAAL 340
Query: 505 VRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546
+ S HP+W+ + ++S+L T T G F YG G I+
Sbjct: 341 ILSKHPNWTNTQVRSSLENT------TTKLGDSFYYGKGLIN 376
|
Subtilisin is an extracellular alkaline serine protease, it catalyzes the hydrolysis of proteins and peptide amides. Has a high substrate specificity to fibrin. Bacillus amyloliquefaciens (taxid: 1390) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 6 EC: 2 |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 116/448 (25%), Positives = 172/448 (38%), Gaps = 78/448 (17%)
Query: 145 CNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIA 204
N+KI YS T Q HGTH++ I +GN A + + GA+P A++
Sbjct: 171 VNDKIAYYHDYSKDGKTAVDQ-EHGTHVSGILSGN----APSETKEPYRLEGAMPEAQLL 225
Query: 205 AYRVCHYPWPCNEADILA-AFDDAIADGVDII-LTGATYGFAFDFAEDAVAIGAFHAMEK 262
RV + A A A DA+ G +I ++ A+ D +A K
Sbjct: 226 LMRVEIVNGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSK 285
Query: 263 GILTAVPTGN-----------MGPKPASTVVVAPW----ILTVAGSSIDRPFIDKAILGD 307
G+ GN + P VV P LTVA S D+ + A +
Sbjct: 286 GVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVK- 344
Query: 308 GTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNF 367
T D P + N+F + N +Y + A + D VKGKI L +
Sbjct: 345 -TADQQDKEMPV-LSTNRF-----EPNKAY---DYAYANRGMKEDDFKDVKGKIALIE-- 392
Query: 368 RGDVE-------TFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQV 420
RGD++ + GA+G + + P P V F K + E PQ
Sbjct: 393 RGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKENPQK 452
Query: 421 HILRSMAIKDDAAPVVHPF-SGRGPSK-----ITPD-IIKPDISAPAVQILAAYTGGWGP 473
I +A P V P SG S+ +T D IKPDI+AP IL++
Sbjct: 453 TITF------NATPKVLPTASGTKLSRFSSWGLTADGNIKPDIAAPGQDILSSVANN--- 503
Query: 474 SNHPMDHRFVKYNILSGTSIASAFAAGAAAYVR----SFHPDWSPSS----IKSALMTTA 525
KY LSGTS+++ AG ++ + +PD +PS K LM++A
Sbjct: 504 ----------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSA 553
Query: 526 LLMNGTVNRG--REFDYGSGHIDPVKAT 551
+ + G+G +D KA+
Sbjct: 554 TALYDEDEKAYFSPRQQGAGAVDAKKAS 581
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|O31788|APRX_BACSU Serine protease AprX OS=Bacillus subtilis (strain 168) GN=aprX PE=1 SV=1 | Back alignment and function description |
|---|
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 58/115 (50%), Gaps = 13/115 (11%)
Query: 436 VHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRF-VKYNILSGTSIA 494
V FS RGP+ + KPDI AP V I++ + R +Y +SGTS+A
Sbjct: 329 VASFSSRGPTVYGKE--KPDILAPGVNIISLRSPNSYIDKLQKSSRVGSQYFTMSGTSMA 386
Query: 495 SAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFD---YGSGHID 546
+ AG AA + +PD +P +K LL NGT ++ ++ D YG+G ++
Sbjct: 387 TPICAGIAALILQQNPDLTPDEVKE------LLKNGT-DKWKDEDPNIYGAGAVN 434
|
Displays serine protease activity. Seems to have a broad substrate specificity. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q8NZ80|C5AP_STRP8 C5a peptidase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 46.6 bits (109), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 109/425 (25%), Positives = 163/425 (38%), Gaps = 77/425 (18%)
Query: 168 HGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILA-AFDD 226
HGTH++ I +GN A + + GA+P A++ RV + A A A D
Sbjct: 193 HGTHVSGILSGN----APSETKEPYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRD 248
Query: 227 AIADGVDII-LTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGN-----------MG 274
A+ G +I ++ A+ D +A KG+ GN +
Sbjct: 249 AVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLA 308
Query: 275 PKPASTVVVAPW----ILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSY 330
P VV P LTVA S D+ + A + T D P + N+F
Sbjct: 309 DHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVK--TADQQDKEMPV-LSTNRF---- 361
Query: 331 GKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVE-------TFRVGALGSIQ 383
+ N +Y + A + D VKGKI L + RGD++ + GA+G +
Sbjct: 362 -EPNKAY---DYAYANRGMKEDDFKDVKGKIALIE--RGDIDFKDKIANAKKAGAVGVLI 415
Query: 384 PASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPF-SGR 442
+ P P V F K + E PQ I +A P V P SG
Sbjct: 416 YDNQDKGFPIELPNVDQMPAAFISRKDGLLLKENPQKTITF------NATPKVLPTASGT 469
Query: 443 GPSK-----ITPD-IIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASA 496
S+ +T D IKPDI+AP IL++ KY LSGTS+++
Sbjct: 470 KLSRFSSWGLTADGNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAP 516
Query: 497 FAAGAAAYVRS----FHPDWSPSS----IKSALMTTALLMNGTVNRG--REFDYGSGHID 546
AG ++ +PD +PS K LM++A + + G+G +D
Sbjct: 517 LVAGIMGLLQKQYEIQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVD 576
Query: 547 PVKAT 551
KA+
Sbjct: 577 AKKAS 581
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M18 (taxid: 301451) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P58099|C5AP_STRP1 C5a peptidase OS=Streptococcus pyogenes serotype M1 GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 109/428 (25%), Positives = 163/428 (38%), Gaps = 83/428 (19%)
Query: 168 HGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDA 227
HGTH++ I +GN A + + GA+P A++ RV AD + A
Sbjct: 193 HGTHVSGILSGN----APSETKEPYRLEGAMPEAQLLLMRVEIV---NGLADYARNYAQA 245
Query: 228 IADGVD-----IILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGN---------- 272
I D V+ I ++ A+ D +A KG+ GN
Sbjct: 246 IIDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRL 305
Query: 273 -MGPKPASTVVVAPW----ILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFP 327
+ P VV P LTVA S D+ + A + T D P + N+F
Sbjct: 306 PLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVK--TADQQDKEMPV-LSTNRF- 361
Query: 328 LSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVE-------TFRVGALG 380
+ N +Y + A + D VKGKI L + RGD++ + GA+G
Sbjct: 362 ----EPNKAY---DYAYANRGMKEDDFKDVKGKIALIE--RGDIDFKDKIANAKKAGAVG 412
Query: 381 SIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPF- 439
+ + P P V F K + E PQ I +A P V P
Sbjct: 413 VLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKENPQKTITF------NATPKVLPTA 466
Query: 440 SGRGPSK-----ITPD-IIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSI 493
SG S+ +T D IKPDI+AP IL++ KY LSGTS+
Sbjct: 467 SGTKLSRFSSWGLTADGNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSM 513
Query: 494 ASAFAAGAAAYVR----SFHPDWSPSS----IKSALMTTALLMNGTVNRG--REFDYGSG 543
++ AG ++ + +PD +PS K LM++A + + G+G
Sbjct: 514 SAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAG 573
Query: 544 HIDPVKAT 551
+D KA+
Sbjct: 574 AVDAKKAS 581
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M1 (taxid: 301447) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 706 | ||||||
| 224106379 | 710 | predicted protein [Populus trichocarpa] | 0.978 | 0.973 | 0.576 | 0.0 | |
| 297745991 | 705 | unnamed protein product [Vitis vinifera] | 0.985 | 0.987 | 0.545 | 0.0 | |
| 359478595 | 717 | PREDICTED: cucumisin-like [Vitis vinifer | 0.984 | 0.969 | 0.543 | 0.0 | |
| 297745988 | 1472 | unnamed protein product [Vitis vinifera] | 0.988 | 0.474 | 0.551 | 0.0 | |
| 225434782 | 737 | PREDICTED: cucumisin-like [Vitis vinifer | 0.988 | 0.947 | 0.547 | 0.0 | |
| 359478633 | 740 | PREDICTED: cucumisin [Vitis vinifera] | 0.975 | 0.931 | 0.551 | 0.0 | |
| 297746066 | 703 | unnamed protein product [Vitis vinifera] | 0.971 | 0.975 | 0.549 | 0.0 | |
| 255558936 | 2072 | peptidase, putative [Ricinus communis] g | 0.968 | 0.330 | 0.554 | 0.0 | |
| 297745989 | 708 | unnamed protein product [Vitis vinifera] | 0.983 | 0.980 | 0.538 | 0.0 | |
| 359478593 | 715 | PREDICTED: cucumisin-like [Vitis vinifer | 0.981 | 0.969 | 0.537 | 0.0 |
| >gi|224106379|ref|XP_002314147.1| predicted protein [Populus trichocarpa] gi|222850555|gb|EEE88102.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/699 (57%), Positives = 500/699 (71%), Gaps = 8/699 (1%)
Query: 2 QVCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQNR 61
Q IVYMGSLP GEYSP +HHLS+LQE ++DS + +VLVRSY+RSFNGF+AKLT EE +
Sbjct: 5 QEYIVYMGSLPEGEYSPSSHHLSLLQEVVKDSSSENVLVRSYKRSFNGFSAKLTSEEAQK 64
Query: 62 ISRMDGIVSVFPSKTLQLQTTRSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFD 121
+ +VS+FPS TLQLQTTRSWDFMGF T + SD+I+GV+D GIWPES+ F+
Sbjct: 65 LVSKKEVVSIFPSTTLQLQTTRSWDFMGFNVTASGKRGTHSDIIVGVIDTGIWPESESFN 124
Query: 122 DKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLV 181
D FGPPP+KW+G AC+GG+NFTCNNKIIGAR+YS ++ R+ LGHG+H AS AAGN+V
Sbjct: 125 DDGFGPPPRKWRG-ACEGGENFTCNNKIIGARHYS-FSSARD-DLGHGSHTASTAAGNIV 181
Query: 182 VGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATY 241
ASF GLA+G RG VPSARI+AY+VC P C +DIL+AFDDAIADGVDII
Sbjct: 182 KKASFYGLAQGTARGGVPSARISAYKVCG-PGSCQSSDILSAFDDAIADGVDIITISIGG 240
Query: 242 GFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFID 301
A +F D +AIG FH+M KGILT GN GP S VAPWI TVA SS DR ID
Sbjct: 241 NQAQEFDTDVIAIGGFHSMAKGILTLQSAGNDGPVSGSVASVAPWIFTVAASSTDRRIID 300
Query: 302 KAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKI 361
K +LG+G TLVG++VN F++KG KFPL YGK AS C L + C CLD LVKGKI
Sbjct: 301 KVVLGNGKTLVGNSVNSFSLKGKKFPLVYGK-GASRECKHLEASLCYSGCLDRTLVKGKI 359
Query: 362 LLCDNFRGDVETFRVGALGSIQPAS-TIMSHPTPFPTVILKMEDFERVKLYINSTEKPQV 420
+LCD+ G E R GALG+I P S +S P P + L + VK Y+NST+KP
Sbjct: 360 VLCDDVNGRTEAKRAGALGAILPISFEDISFILPLPGLSLTEDKLNAVKSYLNSTKKPSA 419
Query: 421 HILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDH 480
+IL+S AIKD+AAP V FS RGP+ I DI+KPD SAP V ILAA+ P++ D
Sbjct: 420 NILKSEAIKDNAAPEVASFSSRGPNPIISDILKPDASAPGVDILAAFPPVLSPTDDTADK 479
Query: 481 RFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDY 540
R VKY+++SGTS+A AAG AA+V++ HPDWS S+IKSA+MTTA MN T EF +
Sbjct: 480 RHVKYSVMSGTSMACPHAAGVAAHVKAAHPDWSASAIKSAIMTTAWPMNVTERSEGEFAF 539
Query: 541 GSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNSSCPEGT-SIATKDL 599
GSGH++PV A +PGLVYE + DYI++ CG+GY+ KIR ISGDNSSC + + +DL
Sbjct: 540 GSGHVNPVTAIHPGLVYETQKSDYIQLFCGLGYTAEKIRQISGDNSSCSKAARNTLPRDL 599
Query: 600 NLPSIAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFESVND 659
N PS+AA+V V F+IKF RTVTNVG AN+TYKA++ + S +KI V P+ALSF+S+ +
Sbjct: 600 NYPSMAAKVAVEESFTIKFHRTVTNVGNANSTYKAKIFSRS-SLKIKVVPEALSFKSLKE 658
Query: 660 KKSFVVTVDGAILQANHTVSASLLWSDGTHNVRSPIVVY 698
KKSF VT+ G L N +SASL+WSDG+H+VRSPIVVY
Sbjct: 659 KKSFAVTIVGRDLTYNSILSASLVWSDGSHSVRSPIVVY 697
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745991|emb|CBI16047.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/707 (54%), Positives = 502/707 (71%), Gaps = 11/707 (1%)
Query: 1 MQVCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQN 60
MQV IVY+GSLP GE+SPL+ HL++L++ ++ S + D LVRSY+RSFNGFAAKLT++E+
Sbjct: 1 MQVYIVYLGSLPQGEFSPLSQHLNILEDVLEGSSSRDSLVRSYKRSFNGFAAKLTEKERE 60
Query: 61 RISRMDGIVSVFPSKTLQLQTTRSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMF 120
++ DG+VS+FPS LQLQTTRSWDFMG ET++R+P VESD+I+GV+D GIWPES F
Sbjct: 61 KLCNKDGVVSIFPSNLLQLQTTRSWDFMGLSETIERKPAVESDVIVGVIDTGIWPESPSF 120
Query: 121 DDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGIN----TTREYQLGHGTHMASIA 176
D+ FGPPPKKWKG C GG+NFTCN K+IGA+ Y+ +N + R+ GHG+H AS A
Sbjct: 121 SDEGFGPPPKKWKG-VCSGGKNFTCNKKVIGAQLYNSLNDPDDSVRDRD-GHGSHTASTA 178
Query: 177 AGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIIL 236
AGN + GASF G+A+G+ RG VPSARIA Y+VC + C +ADILAAFDDAI+DGVDII
Sbjct: 179 AGNKIKGASFYGVAEGSARGGVPSARIAVYKVC-FQSGCADADILAAFDDAISDGVDIIS 237
Query: 237 TGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSID 296
A + ED++AIG+FHAM KGILT GN GP S VAPW+++VA S+ D
Sbjct: 238 VSLGKRSAPNLNEDSLAIGSFHAMAKGILTLNSAGNGGPNTYSVGSVAPWMVSVAASTTD 297
Query: 297 RPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENL 356
R I K +LG+GTTL G ++N F + G +FPL YGK +A+ C E ++ CS CL+ +L
Sbjct: 298 RQIITKVVLGNGTTLAGSSINTFVLNGTEFPLVYGK-DATRTCDEYEAQLCSGDCLERSL 356
Query: 357 VKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTE 416
V+GKI+LC + GD + GA+GSI + S PFP L E+F ++ Y ST+
Sbjct: 357 VEGKIILCRSITGDRDAHEAGAVGSISQEFDVPSI-VPFPISTLNEEEFRMIETYYISTK 415
Query: 417 KPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNH 476
P+ +IL+S + KD +APVV FS RGP+ I P+I+KPDI+AP V ILAAY+ ++
Sbjct: 416 NPKANILKSESTKDSSAPVVASFSSRGPNTIIPEILKPDITAPGVDILAAYSPVAPVTDE 475
Query: 477 PMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGR 536
D R VKY ILSGTS++ AG AAY+++FHPDWSPS+I+SAL+TTA MNGT
Sbjct: 476 AEDKRSVKYTILSGTSMSCPHVAGIAAYIKTFHPDWSPSAIQSALITTAWPMNGTTYDDG 535
Query: 537 EFDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNSSCPEGTSIAT 596
E +GSGH+DPVKA +PGLVYE L+ DYI M+C MGY +RL+SGDNSSCP+ T +
Sbjct: 536 ELAFGSGHVDPVKAVSPGLVYEALKADYINMMCSMGYDTKTVRLVSGDNSSCPKDTKGSP 595
Query: 597 KDLNLPSIAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFES 656
KDLN PS+A +VE F ++F RTVTN G AN+TYKA V T+ +K+ V PD LSF+
Sbjct: 596 KDLNYPSMAVKVEETKSFKVEFPRTVTNFGSANSTYKATVINTNSHIKVQVNPDILSFKL 655
Query: 657 VNDKKSFVVTVDGAILQANHT--VSASLLWSDGTHNVRSPIVVYTNQ 701
+KKSFVVTV G L + +ASL+WSDGTH+VRSPIV Y ++
Sbjct: 656 EKEKKSFVVTVVGQGLDSIEAPIAAASLVWSDGTHSVRSPIVAYIDR 702
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359478595|ref|XP_002280372.2| PREDICTED: cucumisin-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/706 (54%), Positives = 501/706 (70%), Gaps = 11/706 (1%)
Query: 2 QVCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQNR 61
+V IVY+GSLP GE+SPL+ HL++L++ ++ S + D LVRSY+RSFNGFAAKLT++E+ +
Sbjct: 14 KVYIVYLGSLPQGEFSPLSQHLNILEDVLEGSSSRDSLVRSYKRSFNGFAAKLTEKEREK 73
Query: 62 ISRMDGIVSVFPSKTLQLQTTRSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFD 121
+ DG+VS+FPS LQLQTTRSWDFMG ET++R+P VESD+I+GV+D GIWPES F
Sbjct: 74 LCNKDGVVSIFPSNLLQLQTTRSWDFMGLSETIERKPAVESDVIVGVIDTGIWPESPSFS 133
Query: 122 DKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGIN----TTREYQLGHGTHMASIAA 177
D+ FGPPPKKWKG C GG+NFTCN K+IGA+ Y+ +N + R+ GHG+H AS AA
Sbjct: 134 DEGFGPPPKKWKG-VCSGGKNFTCNKKVIGAQLYNSLNDPDDSVRDRD-GHGSHTASTAA 191
Query: 178 GNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILT 237
GN + GASF G+A+G+ RG VPSARIA Y+VC + C +ADILAAFDDAI+DGVDII
Sbjct: 192 GNKIKGASFYGVAEGSARGGVPSARIAVYKVC-FQSGCADADILAAFDDAISDGVDIISV 250
Query: 238 GATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDR 297
A + ED++AIG+FHAM KGILT GN GP S VAPW+++VA S+ DR
Sbjct: 251 SLGKRSAPNLNEDSLAIGSFHAMAKGILTLNSAGNGGPNTYSVGSVAPWMVSVAASTTDR 310
Query: 298 PFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLV 357
I K +LG+GTTL G ++N F + G +FPL YGK +A+ C E ++ CS CL+ +LV
Sbjct: 311 QIITKVVLGNGTTLAGSSINTFVLNGTEFPLVYGK-DATRTCDEYEAQLCSGDCLERSLV 369
Query: 358 KGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEK 417
+GKI+LC + GD + GA+GSI + S PFP L E+F ++ Y ST+
Sbjct: 370 EGKIILCRSITGDRDAHEAGAVGSISQEFDVPSI-VPFPISTLNEEEFRMIETYYISTKN 428
Query: 418 PQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHP 477
P+ +IL+S + KD +APVV FS RGP+ I P+I+KPDI+AP V ILAAY+ ++
Sbjct: 429 PKANILKSESTKDSSAPVVASFSSRGPNTIIPEILKPDITAPGVDILAAYSPVAPVTDEA 488
Query: 478 MDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGRE 537
D R VKY ILSGTS++ AG AAY+++FHPDWSPS+I+SAL+TTA MNGT E
Sbjct: 489 EDKRSVKYTILSGTSMSCPHVAGIAAYIKTFHPDWSPSAIQSALITTAWPMNGTTYDDGE 548
Query: 538 FDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNSSCPEGTSIATK 597
+GSGH+DPVKA +PGLVYE L+ DYI M+C MGY +RL+SGDNSSCP+ T + K
Sbjct: 549 LAFGSGHVDPVKAVSPGLVYEALKADYINMMCSMGYDTKTVRLVSGDNSSCPKDTKGSPK 608
Query: 598 DLNLPSIAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFESV 657
DLN PS+A +VE F ++F RTVTN G AN+TYKA V T+ +K+ V PD LSF+
Sbjct: 609 DLNYPSMAVKVEETKSFKVEFPRTVTNFGSANSTYKATVINTNSHIKVQVNPDILSFKLE 668
Query: 658 NDKKSFVVTVDGAILQANHT--VSASLLWSDGTHNVRSPIVVYTNQ 701
+KKSFVVTV G L + +ASL+WSDGTH+VRSPIV Y ++
Sbjct: 669 KEKKSFVVTVVGQGLDSIEAPIAAASLVWSDGTHSVRSPIVAYIDR 714
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745988|emb|CBI16044.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/711 (55%), Positives = 494/711 (69%), Gaps = 13/711 (1%)
Query: 1 MQVCIVYMGSLPAGE-YSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQ 59
+QV +VY+G LP + YSP+ S+L ++ S + VRSY +SFNGFAA+LTD E+
Sbjct: 768 IQVYVVYLGHLPENQAYSPMGQQYSILGSVLETSSISQAFVRSYRKSFNGFAARLTDREK 827
Query: 60 NRISRMDGIVSVFPSKTLQLQTTRSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDM 119
R++ M+ +VS+FPSKTLQ QT+RSWDFMGF E+++R P VESD+IIGV D GIWPES+
Sbjct: 828 ERLANMEDVVSIFPSKTLQPQTSRSWDFMGFTESIRRRPFVESDVIIGVFDTGIWPESES 887
Query: 120 FDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQL---GHGTHMASIA 176
F DK FGP P+KW+G C+GG+NFTCNNK+IGAR Y+ Y GHGTH AS A
Sbjct: 888 FSDKGFGPIPRKWRG-VCQGGKNFTCNNKLIGARNYNAKKAPDNYVRDIDGHGTHTASTA 946
Query: 177 AGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIIL 236
AGN V ASF G+AKG RG VPSARIAAY+VCH P C EADI+AAFDDAIADGVDII
Sbjct: 947 AGNPVT-ASFFGVAKGTARGGVPSARIAAYKVCH-PSGCEEADIMAAFDDAIADGVDIIT 1004
Query: 237 TGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSID 296
G A DF D++AIGAFHAM+KGILT GN GPK A+ V VAPW+L+VA SS D
Sbjct: 1005 ISLGLGGAVDFTIDSIAIGAFHAMQKGILTVNSAGNNGPKRATAVGVAPWLLSVAASSTD 1064
Query: 297 RPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENL 356
R I K ILGDGT L G A+N F ++G KFPL YGK +A+ C S QC CLD L
Sbjct: 1065 RRIISKVILGDGTRLTGAAINSFQLRGEKFPLVYGK-DATSKCDAF-SAQCISKCLDSKL 1122
Query: 357 VKGKILLCDNFRGDVETFRVGALGSI--QPASTIMSHPTPFPTVILKMEDFERVKLYINS 414
VKGKI++C F G E F+ GA+G+I T +S P P L+ + F ++ YINS
Sbjct: 1123 VKGKIVVCQAFWGLQEAFKAGAVGAILLNDFQTDVSFIVPLPASALRPKRFNKLLSYINS 1182
Query: 415 TEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPS 474
T+ P+ ILRS++ KD +APVV FS RGP+ I P+I+KPDISAP V ILAA++ PS
Sbjct: 1183 TKSPEATILRSVSRKDASAPVVAQFSSRGPNIILPEILKPDISAPGVDILAAFSPLASPS 1242
Query: 475 NHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNR 534
D R +YNI+SGTS+A AG AAYV++FHP+WSPS+I+SALMTTA MN T
Sbjct: 1243 EISGDKRAARYNIISGTSMACPHVAGVAAYVKTFHPNWSPSAIQSALMTTAWRMNATRTP 1302
Query: 535 GREFDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNSSCPEGTSI 594
E YGSGH++PVKA +PGL+Y + DY+ MLCGMGY +RLI+G+NS CP+ ++
Sbjct: 1303 DGELAYGSGHVNPVKAISPGLIYHAHKQDYVNMLCGMGYDSKNMRLITGENSQCPKNSTF 1362
Query: 595 ATKDLNLPSIAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSF 654
+ KDLN PS+A +V + PF ++F R V NVG A + YKAEV TTS +K+ V P+ LSF
Sbjct: 1363 SAKDLNYPSMAVKVPPNKPFKVEFPRRVKNVGPAPSIYKAEVTTTSPRLKVRVIPNVLSF 1422
Query: 655 ESVNDKKSFVVTVDGAILQANHTVSASLLWSDGTHNVRSPIVVYTNQEFAS 705
S+ ++K FVV+V G L+ SASL+WSDG H V+SPIVVYT+ + S
Sbjct: 1423 RSLYEEKHFVVSVVGKGLELME--SASLVWSDGRHLVKSPIVVYTDNDLPS 1471
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434782|ref|XP_002280283.1| PREDICTED: cucumisin-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/710 (54%), Positives = 495/710 (69%), Gaps = 12/710 (1%)
Query: 2 QVCIVYMGSLPAGE-YSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQN 60
+V +VY+G LP + YSP+ S+L ++ S + VRSY +SFNGFAA+LTD E+
Sbjct: 33 KVYVVYLGHLPENQAYSPMGQQYSILGSVLETSSISQAFVRSYRKSFNGFAARLTDREKE 92
Query: 61 RISRMDGIVSVFPSKTLQLQTTRSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMF 120
R++ M+ +VS+FPSKTLQ QT+RSWDFMGF E+++R P VESD+IIGV D GIWPES+ F
Sbjct: 93 RLANMEDVVSIFPSKTLQPQTSRSWDFMGFTESIRRRPFVESDVIIGVFDTGIWPESESF 152
Query: 121 DDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQL---GHGTHMASIAA 177
DK FGP P+KW+G C+GG+NFTCNNK+IGAR Y+ Y GHGTH AS AA
Sbjct: 153 SDKGFGPIPRKWRG-VCQGGKNFTCNNKLIGARNYNAKKAPDNYVRDIDGHGTHTASTAA 211
Query: 178 GNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILT 237
GN V ASF G+AKG RG VPSARIAAY+VCH P C EADI+AAFDDAIADGVDII
Sbjct: 212 GNPVT-ASFFGVAKGTARGGVPSARIAAYKVCH-PSGCEEADIMAAFDDAIADGVDIITI 269
Query: 238 GATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDR 297
G A DF D++AIGAFHAM+KGILT GN GPK A+ V VAPW+L+VA SS DR
Sbjct: 270 SLGLGGAVDFTIDSIAIGAFHAMQKGILTVNSAGNNGPKRATAVGVAPWLLSVAASSTDR 329
Query: 298 PFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLV 357
I K ILGDGT L G A+N F ++G KFPL YGK +A+ C ++++C CLD LV
Sbjct: 330 RIISKVILGDGTRLTGAAINSFQLRGEKFPLVYGK-DATSKCDAFSAQRCISKCLDSKLV 388
Query: 358 KGKILLCDNFRGDVETFRVGALGSI--QPASTIMSHPTPFPTVILKMEDFERVKLYINST 415
KGKI++C F G E F+ GA+G+I T +S P P L+ + F ++ YINST
Sbjct: 389 KGKIVVCQAFWGLQEAFKAGAVGAILLNDFQTDVSFIVPLPASALRPKRFNKLLSYINST 448
Query: 416 EKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSN 475
+ P+ ILRS++ KD +APVV FS RGP+ I P+I+KPDISAP V ILAA++ PS
Sbjct: 449 KSPEATILRSVSRKDASAPVVAQFSSRGPNIILPEILKPDISAPGVDILAAFSPLASPSE 508
Query: 476 HPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRG 535
D R +YNI+SGTS+A AG AAYV++FHP+WSPS+I+SALMTTA MN T
Sbjct: 509 ISGDKRAARYNIISGTSMACPHVAGVAAYVKTFHPNWSPSAIQSALMTTAWRMNATRTPD 568
Query: 536 REFDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNSSCPEGTSIA 595
E YGSGH++PVKA +PGL+Y + DY+ MLCGMGY +RLI+G+NS CP+ ++ +
Sbjct: 569 GELAYGSGHVNPVKAISPGLIYHAHKQDYVNMLCGMGYDSKNMRLITGENSQCPKNSTFS 628
Query: 596 TKDLNLPSIAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFE 655
KDLN PS+A +V + PF ++F R V NVG A + YKAEV TTS +K+ V P+ LSF
Sbjct: 629 AKDLNYPSMAVKVPPNKPFKVEFPRRVKNVGPAPSIYKAEVTTTSPRLKVRVIPNVLSFR 688
Query: 656 SVNDKKSFVVTVDGAILQANHTVSASLLWSDGTHNVRSPIVVYTNQEFAS 705
S+ ++K FVV+V G L+ SASL+WSDG H V+SPIVVYT+ + S
Sbjct: 689 SLYEEKHFVVSVVGKGLELME--SASLVWSDGRHLVKSPIVVYTDNDLPS 736
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359478633|ref|XP_002280951.2| PREDICTED: cucumisin [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1949), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/705 (55%), Positives = 498/705 (70%), Gaps = 16/705 (2%)
Query: 5 IVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQNRISR 64
IVYMG+LP ++SPL+ HLS+L++ + S D LVRSY RSFNGFAAKLT++E+ +++
Sbjct: 35 IVYMGALPQQQFSPLSQHLSILEDALGGSSPEDSLVRSYGRSFNGFAAKLTEQEREKLAS 94
Query: 65 MDGIVSVFPSKTLQLQTTRSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKS 124
+ +VSVFPS LQL TTRSWDFMGFP+TVKR P++ESD+IIGVLD GIWPES F D+
Sbjct: 95 KEEVVSVFPSGILQLHTTRSWDFMGFPQTVKRVPSIESDIIIGVLDTGIWPESKSFSDEG 154
Query: 125 FGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGI----NTTREYQLGHGTHMASIAAGNL 180
GP PKKWKG +CKGGQNFTCN KIIGAR Y+ + NT R+ + GHGTH AS AAG++
Sbjct: 155 LGPVPKKWKG-SCKGGQNFTCNKKIIGARVYNSMISPDNTARDSE-GHGTHTASTAAGSV 212
Query: 181 VVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGAT 240
V GASF G+ KG+ RG VPSARIA Y+VC Y C AD++AAFDDAI+DGVDII
Sbjct: 213 VKGASFYGVGKGDARGGVPSARIAVYKVC-YETGCTVADVMAAFDDAISDGVDIITVSLG 271
Query: 241 YGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFI 300
A D++ IGAFHAM KGILT GN GP P S VAPW+++VA S+ DR I
Sbjct: 272 AAAALPLDSDSIGIGAFHAMAKGILTLNSAGNNGPVPVSVSSVAPWMVSVAASTTDRRII 331
Query: 301 DKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGK 360
+ +LG+G T+ G A+N F + G P+ YGKT ++ C + + C CL+E+L KGK
Sbjct: 332 GEVVLGNGVTVEGIAINSFELNGTNHPIVYGKTAST--CDKQNAEICRPSCLNEDLSKGK 389
Query: 361 ILLC-DNFRGDVETFRVGALGSI---QPASTIMSHPTPFPTVILKMEDFERVKLYINSTE 416
I+LC +N + VE RVGALG+I Q + P P L DFE+V+ YINST+
Sbjct: 390 IVLCKNNPQIYVEASRVGALGTITLAQEYQEKVPFIVPVPMTTLTRPDFEKVEAYINSTK 449
Query: 417 KPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNH 476
KP+ +IL+S ++ D +APVV FS RGP++I PD +KPDI+AP V ILAA++ S+
Sbjct: 450 KPKANILKSESLNDTSAPVVAFFSSRGPNRIVPDFLKPDITAPGVDILAAFSPIAPISDT 509
Query: 477 PMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGR 536
D R V YN LSGTS++ AA AAYV+SFHP WSPS+IKSA+MTTA ++ + N
Sbjct: 510 DEDDRRVNYNFLSGTSMSCPHAAAVAAYVKSFHPTWSPSAIKSAIMTTAQRLDPSNNPDG 569
Query: 537 EFDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNS-SCPEGTSIA 595
E YGSGHIDPVKA +PGLVY+ + DYIKM+C MGY N++RLISGDNS SCP+ +
Sbjct: 570 ELAYGSGHIDPVKARSPGLVYDASKEDYIKMMCTMGYDTNQVRLISGDNSTSCPKDGKGS 629
Query: 596 TKDLNLPSIAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFE 655
+DLN PS+AA+V+ PF++KF RTVTNVG AN+TYKA+++ S +K+ V P LSF+
Sbjct: 630 PRDLNYPSMAAKVDPKKPFAVKFPRTVTNVGFANSTYKAKIRIRSRHIKVQVNPSTLSFK 689
Query: 656 SVNDKKSFVVTV--DGAILQANHTVSASLLWSDGTHNVRSPIVVY 698
S+N+ KSF+VTV DG + + T SASL WSDG H+VRSPI VY
Sbjct: 690 SLNETKSFLVTVTGDGLNFEKDPTASASLAWSDGNHHVRSPIFVY 734
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297746066|emb|CBI16122.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/702 (54%), Positives = 495/702 (70%), Gaps = 16/702 (2%)
Query: 8 MGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQNRISRMDG 67
MG+LP ++SPL+ HLS+L++ + S D LVRSY RSFNGFAAKLT++E+ +++ +
Sbjct: 1 MGALPQQQFSPLSQHLSILEDALGGSSPEDSLVRSYGRSFNGFAAKLTEQEREKLASKEE 60
Query: 68 IVSVFPSKTLQLQTTRSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGP 127
+VSVFPS LQL TTRSWDFMGFP+TVKR P++ESD+IIGVLD GIWPES F D+ GP
Sbjct: 61 VVSVFPSGILQLHTTRSWDFMGFPQTVKRVPSIESDIIIGVLDTGIWPESKSFSDEGLGP 120
Query: 128 PPKKWKGGACKGGQNFTCNNKIIGARYYSGI----NTTREYQLGHGTHMASIAAGNLVVG 183
PKKWKG +CKGGQNFTCN KIIGAR Y+ + NT R+ + GHGTH AS AAG++V G
Sbjct: 121 VPKKWKG-SCKGGQNFTCNKKIIGARVYNSMISPDNTARDSE-GHGTHTASTAAGSVVKG 178
Query: 184 ASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGF 243
ASF G+ KG+ RG VPSARIA Y+VC Y C AD++AAFDDAI+DGVDII
Sbjct: 179 ASFYGVGKGDARGGVPSARIAVYKVC-YETGCTVADVMAAFDDAISDGVDIITVSLGAAA 237
Query: 244 AFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKA 303
A D++ IGAFHAM KGILT GN GP P S VAPW+++VA S+ DR I +
Sbjct: 238 ALPLDSDSIGIGAFHAMAKGILTLNSAGNNGPVPVSVSSVAPWMVSVAASTTDRRIIGEV 297
Query: 304 ILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILL 363
+LG+G T+ G A+N F + G P+ YGKT ++ C + + C CL+E+L KGKI+L
Sbjct: 298 VLGNGVTVEGIAINSFELNGTNHPIVYGKTAST--CDKQNAEICRPSCLNEDLSKGKIVL 355
Query: 364 C-DNFRGDVETFRVGALGSI---QPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQ 419
C +N + VE RVGALG+I Q + P P L DFE+V+ YINST+KP+
Sbjct: 356 CKNNPQIYVEASRVGALGTITLAQEYQEKVPFIVPVPMTTLTRPDFEKVEAYINSTKKPK 415
Query: 420 VHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMD 479
+IL+S ++ D +APVV FS RGP++I PD +KPDI+AP V ILAA++ S+ D
Sbjct: 416 ANILKSESLNDTSAPVVAFFSSRGPNRIVPDFLKPDITAPGVDILAAFSPIAPISDTDED 475
Query: 480 HRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFD 539
R V YN LSGTS++ AA AAYV+SFHP WSPS+IKSA+MTTA ++ + N E
Sbjct: 476 DRRVNYNFLSGTSMSCPHAAAVAAYVKSFHPTWSPSAIKSAIMTTAQRLDPSNNPDGELA 535
Query: 540 YGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNS-SCPEGTSIATKD 598
YGSGHIDPVKA +PGLVY+ + DYIKM+C MGY N++RLISGDNS SCP+ + +D
Sbjct: 536 YGSGHIDPVKARSPGLVYDASKEDYIKMMCTMGYDTNQVRLISGDNSTSCPKDGKGSPRD 595
Query: 599 LNLPSIAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFESVN 658
LN PS+AA+V+ PF++KF RTVTNVG AN+TYKA+++ S +K+ V P LSF+S+N
Sbjct: 596 LNYPSMAAKVDPKKPFAVKFPRTVTNVGFANSTYKAKIRIRSRHIKVQVNPSTLSFKSLN 655
Query: 659 DKKSFVVTV--DGAILQANHTVSASLLWSDGTHNVRSPIVVY 698
+ KSF+VTV DG + + T SASL WSDG H+VRSPI VY
Sbjct: 656 ETKSFLVTVTGDGLNFEKDPTASASLAWSDGNHHVRSPIFVY 697
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558936|ref|XP_002520491.1| peptidase, putative [Ricinus communis] gi|223540333|gb|EEF41904.1| peptidase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/698 (55%), Positives = 492/698 (70%), Gaps = 14/698 (2%)
Query: 1 MQVCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLA-NDVLVRSYERSFNGFAAKLTDEEQ 59
+Q+ IVYMGSLP EYSPL+HHLS+LQE + S + ++LV SY RSFNGFAAKL+D E
Sbjct: 4 LQLHIVYMGSLPKVEYSPLSHHLSLLQEVTESSSSIENLLVTSYRRSFNGFAAKLSDFEA 63
Query: 60 NRISRMDGIVSVFPSKTLQLQTTRSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDM 119
+++ M +VSVFPS+ L LQTTRSW FMG E +R P ES++I+GV+D GIWPES+
Sbjct: 64 QKLASMKEVVSVFPSRILDLQTTRSWSFMGLDEGARRNPIAESNVIVGVMDTGIWPESES 123
Query: 120 FDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSG----INTTREYQLGHGTHMASI 175
F DK F PPPK WKG +C GG NFTCNNKIIGARYY+ I + R+ +GHGTH AS
Sbjct: 124 FSDKGFSPPPKNWKG-SCNGGLNFTCNNKIIGARYYNSTQLRIISARD-DVGHGTHTAST 181
Query: 176 AAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDII 235
AAGN V+ ASF G+A+G RG VPSARI+AYRVC C+ A++LAAFDDAIADGVDII
Sbjct: 182 AAGNKVMDASFFGIARGTARGGVPSARISAYRVCSVE-GCSGAEVLAAFDDAIADGVDII 240
Query: 236 LTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSI 295
+A ++ ED +AIGAFHAMEKGI + GN G + S VAPWILTVA SS
Sbjct: 241 TISVGPSYALNYYEDPIAIGAFHAMEKGIFVSQSAGNNGVQIGSVSSVAPWILTVAASSK 300
Query: 296 DRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDEN 355
DR IDK +LG+G TL G ++N F +KG FPL YG AS C+ +R C L CLD +
Sbjct: 301 DRRIIDKVVLGNGKTLTGTSINSFALKGENFPLIYG-IGASATCTPEFARVCQLGCLDAS 359
Query: 356 LVKGKILLCDNFRGDVETFRVGALGSIQPASTI--MSHPTPFPTVILKMEDFERVKLYIN 413
LVKGKI+LCD+ RG E RVGA+GSI ++ I ++ P + L ++ VK YIN
Sbjct: 360 LVKGKIVLCDDSRGHFEIERVGAVGSILASNGIEDVAFVASSPFLSLNDDNIAAVKSYIN 419
Query: 414 STEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGP 473
ST +P +IL+S AI D +APVV FS RGP+ I D++KPDISAP ++ILAA+ P
Sbjct: 420 STSQPVANILKSEAINDSSAPVVASFSSRGPNLIALDLLKPDISAPGIEILAAFPTNIPP 479
Query: 474 SNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVN 533
+ D+R VK+NI+SGTS++ AAG AAYV+SFHP+WSPS+IKSA+MTTA MN T +
Sbjct: 480 TESLHDNRQVKFNIVSGTSMSCPHAAGVAAYVKSFHPEWSPSAIKSAIMTTASPMNATTS 539
Query: 534 RGREFDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGM-GYSVNKIRLISGDNSSCPEGT 592
E YGSGH++P KA +PGLVYE DYIK LC + GY+ + +R ISG+N++CPEG
Sbjct: 540 SDAELAYGSGHLNPSKAIDPGLVYEASNEDYIKFLCSVSGYTEDMVRRISGENTTCPEGA 599
Query: 593 SIAT-KDLNLPSIAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDA 651
+ A +DLN PS+ A + + F+I F RTVTNVGL N+TYKA+V T S +KI V P+
Sbjct: 600 NKALPRDLNYPSMTAAIAANESFTISFYRTVTNVGLPNSTYKAKVFTGS-KLKIKVVPEV 658
Query: 652 LSFESVNDKKSFVVTVDGAILQANHTVSASLLWSDGTH 689
LSF+++N+KKSF V+VDG L + SASL+WSDG+H
Sbjct: 659 LSFKAINEKKSFNVSVDGRYLVSKEMTSASLVWSDGSH 696
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297745989|emb|CBI16045.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/708 (53%), Positives = 494/708 (69%), Gaps = 14/708 (1%)
Query: 1 MQVCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQN 60
+QV IVY+GSLP GE+SP++ HL VL++ ++ S + D LVRSY+RSFNGFAA+LT++E+
Sbjct: 5 VQVYIVYLGSLPKGEFSPMSEHLGVLEDVLEGSSSTDSLVRSYKRSFNGFAARLTEKERE 64
Query: 61 RISRMDGIVSVFPSKTLQLQTTRSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMF 120
+++ +G+VSVFPS+ L+L TTRSWDFMGF ET + +P +ESD+IIGV D GIWPES F
Sbjct: 65 KLANKEGVVSVFPSRILKLHTTRSWDFMGFSETSRHKPALESDVIIGVFDTGIWPESPSF 124
Query: 121 DDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQL----GHGTHMASIA 176
DK FGPPP+KWK G C GG+NFTCN K+IGAR Y+ +N + + + GHG+H ASIA
Sbjct: 125 SDKDFGPPPRKWK-GVCSGGKNFTCNKKVIGARIYNSLNDSFDVSVRDIDGHGSHTASIA 183
Query: 177 AGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIIL 236
AGN V ASF GLA+G RG VPSAR+A Y+VC + C ADILAAFDDAIADGVDII
Sbjct: 184 AGNNVEHASFHGLAQGKARGGVPSARLAIYKVCVF-LGCASADILAAFDDAIADGVDIIS 242
Query: 237 TGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSID 296
+ A EDA+AIGAFHAM GILT GN GP+ ST APW+++VA S+ID
Sbjct: 243 ISLGFDSAVALEEDAIAIGAFHAMAGGILTVHSAGNEGPEVFSTFSSAPWMVSVAASTID 302
Query: 297 RPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGK-TNASYPCSELASRQCSLFCLDEN 355
R ID+ +LG+GT L G + N FTM G+ +PL YGK T+ + C+ S+ C CL+++
Sbjct: 303 RKIIDRVVLGNGTELTGRSFNYFTMNGSMYPLIYGKVTSRANACNNFLSQLCVPDCLNKS 362
Query: 356 LVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINST 415
V+GKILLC++ GD GA GSI+ +S P PT+ L+ +D V+ Y NST
Sbjct: 363 AVEGKILLCESAYGDEGAHWAGAAGSIK-LDVGVSSVVPLPTIALRGKDLRLVRSYYNST 421
Query: 416 EKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSN 475
+K + IL+S AIKD +APVV PFS RGP+ +I+KPDI+AP V ILAA++ P
Sbjct: 422 KKAEAKILKSEAIKDSSAPVVAPFSSRGPNAAILEIMKPDITAPGVDILAAFS----PIP 477
Query: 476 HPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRG 535
+D V+YNILSGTS+A AG AAYV+SFHP WS S+I+SALMTTA M + N
Sbjct: 478 KLVDGISVEYNILSGTSMACPHVAGIAAYVKSFHPAWSASAIRSALMTTARPMKVSANLH 537
Query: 536 REFDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNSSCPEGTSIA 595
+GSGH+DPVKA +PGLVYE + +Y +MLC MGY+ +RLISGDNSSCP+ + +
Sbjct: 538 GVLSFGSGHVDPVKAISPGLVYETTKDNYTQMLCDMGYNTTMVRLISGDNSSCPKDSKGS 597
Query: 596 TKDLNLPSIAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKTTSI-DVKINVTPDALSF 654
KDLN PS+ V+ PF ++F RTVTNVG +N+TYKA+V +K++V P LSF
Sbjct: 598 PKDLNYPSMTVYVKQLRPFKVEFPRTVTNVGRSNSTYKAQVIIRKHPRMKVDVNPPMLSF 657
Query: 655 ESVNDKKSFVVTVDGAILQANHTV-SASLLWSDGTHNVRSPIVVYTNQ 701
+ + +KKSFVVTV G + V SA+L+WSDGTH VRSPI VYT+
Sbjct: 658 KLIKEKKSFVVTVTGQGMTMERPVESATLVWSDGTHTVRSPITVYTDM 705
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359478593|ref|XP_002280348.2| PREDICTED: cucumisin-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/707 (53%), Positives = 493/707 (69%), Gaps = 14/707 (1%)
Query: 2 QVCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQNR 61
+V IVY+GSLP GE+SP++ HL VL++ ++ S + D LVRSY+RSFNGFAA+LT++E+ +
Sbjct: 13 KVYIVYLGSLPKGEFSPMSEHLGVLEDVLEGSSSTDSLVRSYKRSFNGFAARLTEKEREK 72
Query: 62 ISRMDGIVSVFPSKTLQLQTTRSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFD 121
++ +G+VSVFPS+ L+L TTRSWDFMGF ET + +P +ESD+IIGV D GIWPES F
Sbjct: 73 LANKEGVVSVFPSRILKLHTTRSWDFMGFSETSRHKPALESDVIIGVFDTGIWPESPSFS 132
Query: 122 DKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQL----GHGTHMASIAA 177
DK FGPPP+KWK G C GG+NFTCN K+IGAR Y+ +N + + + GHG+H ASIAA
Sbjct: 133 DKDFGPPPRKWK-GVCSGGKNFTCNKKVIGARIYNSLNDSFDVSVRDIDGHGSHTASIAA 191
Query: 178 GNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILT 237
GN V ASF GLA+G RG VPSAR+A Y+VC + C ADILAAFDDAIADGVDII
Sbjct: 192 GNNVEHASFHGLAQGKARGGVPSARLAIYKVCVF-LGCASADILAAFDDAIADGVDIISI 250
Query: 238 GATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDR 297
+ A EDA+AIGAFHAM GILT GN GP+ ST APW+++VA S+IDR
Sbjct: 251 SLGFDSAVALEEDAIAIGAFHAMAGGILTVHSAGNEGPEVFSTFSSAPWMVSVAASTIDR 310
Query: 298 PFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGK-TNASYPCSELASRQCSLFCLDENL 356
ID+ +LG+GT L G + N FTM G+ +PL YGK T+ + C+ S+ C CL+++
Sbjct: 311 KIIDRVVLGNGTELTGRSFNYFTMNGSMYPLIYGKVTSRANACNNFLSQLCVPDCLNKSA 370
Query: 357 VKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTE 416
V+GKILLC++ GD GA GSI+ +S P PT+ L+ +D V+ Y NST+
Sbjct: 371 VEGKILLCESAYGDEGAHWAGAAGSIK-LDVGVSSVVPLPTIALRGKDLRLVRSYYNSTK 429
Query: 417 KPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNH 476
K + IL+S AIKD +APVV PFS RGP+ +I+KPDI+AP V ILAA++ P
Sbjct: 430 KAEAKILKSEAIKDSSAPVVAPFSSRGPNAAILEIMKPDITAPGVDILAAFS----PIPK 485
Query: 477 PMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGR 536
+D V+YNILSGTS+A AG AAYV+SFHP WS S+I+SALMTTA M + N
Sbjct: 486 LVDGISVEYNILSGTSMACPHVAGIAAYVKSFHPAWSASAIRSALMTTARPMKVSANLHG 545
Query: 537 EFDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNSSCPEGTSIAT 596
+GSGH+DPVKA +PGLVYE + +Y +MLC MGY+ +RLISGDNSSCP+ + +
Sbjct: 546 VLSFGSGHVDPVKAISPGLVYETTKDNYTQMLCDMGYNTTMVRLISGDNSSCPKDSKGSP 605
Query: 597 KDLNLPSIAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKTTSI-DVKINVTPDALSFE 655
KDLN PS+ V+ PF ++F RTVTNVG +N+TYKA+V +K++V P LSF+
Sbjct: 606 KDLNYPSMTVYVKQLRPFKVEFPRTVTNVGRSNSTYKAQVIIRKHPRMKVDVNPPMLSFK 665
Query: 656 SVNDKKSFVVTVDGAILQANHTV-SASLLWSDGTHNVRSPIVVYTNQ 701
+ +KKSFVVTV G + V SA+L+WSDGTH VRSPI VYT+
Sbjct: 666 LIKEKKSFVVTVTGQGMTMERPVESATLVWSDGTHTVRSPITVYTDM 712
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 706 | ||||||
| TAIR|locus:2168524 | 693 | AT5G59190 "AT5G59190" [Arabido | 0.974 | 0.992 | 0.495 | 3.9e-179 | |
| TAIR|locus:2168434 | 732 | SBT4.13 "AT5G59120" [Arabidops | 0.978 | 0.943 | 0.507 | 3.5e-178 | |
| TAIR|locus:2153296 | 741 | AT5G59100 "AT5G59100" [Arabido | 0.983 | 0.936 | 0.495 | 1.5e-177 | |
| TAIR|locus:2102807 | 736 | AT3G46850 "AT3G46850" [Arabido | 0.971 | 0.932 | 0.504 | 8.6e-175 | |
| TAIR|locus:2168444 | 732 | AT5G59130 "AT5G59130" [Arabido | 0.967 | 0.933 | 0.492 | 3.4e-171 | |
| TAIR|locus:2102792 | 738 | AT3G46840 "AT3G46840" [Arabido | 0.977 | 0.934 | 0.493 | 2.2e-169 | |
| TAIR|locus:2153291 | 736 | SBT4.12 "AT5G59090" [Arabidops | 0.975 | 0.936 | 0.487 | 3.6e-169 | |
| TAIR|locus:2154528 | 713 | AT5G58840 "AT5G58840" [Arabido | 0.466 | 0.461 | 0.519 | 1.9e-164 | |
| TAIR|locus:2154513 | 701 | AT5G58830 "AT5G58830" [Arabido | 0.449 | 0.452 | 0.525 | 5.1e-164 | |
| TAIR|locus:2154503 | 703 | AT5G58820 "AT5G58820" [Arabido | 0.505 | 0.507 | 0.519 | 2.8e-163 |
| TAIR|locus:2168524 AT5G59190 "AT5G59190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1739 (617.2 bits), Expect = 3.9e-179, P = 3.9e-179
Identities = 346/698 (49%), Positives = 460/698 (65%)
Query: 8 MGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQNRISRMDG 67
MG+LP +YSP +HHLS+LQ+ + A+ +LVRSY+RSFNGFAA L+ E ++ M
Sbjct: 1 MGTLPEIKYSPPSHHLSILQKLVGTIAASHLLVRSYKRSFNGFAANLSQAESQKLQNMKE 60
Query: 68 IVSVFPSKTLQLQTTRSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGP 127
+VSVFPSK+ +L TTRSWDF+GF E +RE ESD+I+GV+D+GIWPES+ FDD+ FGP
Sbjct: 61 VVSVFPSKSHELTTTRSWDFVGFGEKARRESVKESDVIVGVIDSGIWPESESFDDEGFGP 120
Query: 128 PPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVGASFD 187
PPKKWKG +CKGG F CNNK+IGAR+Y+ + + GHGTH AS AAGN V ASF
Sbjct: 121 PPKKWKG-SCKGGLKFACNNKLIGARFYNKFADSARDEEGHGTHTASTAAGNAVQAASFY 179
Query: 188 GLAKGNVRGAVPSARIAAYRVCHYPWPCNEXXXXXXXXXXXXXGVDIILTGATYGFAFDF 247
GLA+G RG VPSARIAAY+VC CN+ GVD+I + + +
Sbjct: 180 GLAQGTARGGVPSARIAAYKVCFNR--CNDVDILAAFDDAIADGVDVISISISADYVSNL 237
Query: 248 AEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGD 307
+VAIG+FHAM +GI+TA GN GP S V+PW++TVA S DR FID+ +LG+
Sbjct: 238 LNASVAIGSFHAMMRGIITAGSAGNNGPDQGSVANVSPWMITVAASGTDRQFIDRVVLGN 297
Query: 308 GTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNF 367
G L G +VN F + G KFP+ YG+ N S CS+ + CS C+D LVKGKI+LCD+F
Sbjct: 298 GKALTGISVNTFNLNGTKFPIVYGQ-NVSRNCSQAQAGYCSSGCVDSELVKGKIVLCDDF 356
Query: 368 RGDVETFRVGALGSIQPASTI--MSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRS 425
G E + GA+G I + + + PFP L ED++ +K YI S E PQ ILR+
Sbjct: 357 LGYREAYLAGAIGVIVQNTLLPDSAFVVPFPASSLGFEDYKSIKSYIESAEPPQAEILRT 416
Query: 426 MAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSN--HPMDHRFV 483
I D AP V FS RGPS + +++KPD+SAP ++ILAA++ PS+ +P D R V
Sbjct: 417 EEIVDREAPYVPSFSSRGPSFVIQNLLKPDVSAPGLEILAAFSPVASPSSFLNPEDKRSV 476
Query: 484 KYNILSGTSIXXXXXXXXXXYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSG 543
+Y+++SGTS+ YV+SFHPDWSPS+IKSA+MTTA MN N +EF YGSG
Sbjct: 477 RYSVMSGTSMACPHVAGVAAYVKSFHPDWSPSAIKSAIMTTATPMNLKKNPEQEFAYGSG 536
Query: 544 HIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNSSCPEGTSIATKDLNLPS 603
I+P KA++PGLVYEV DY+KMLC G+ + SG N +C E T + KDLN P+
Sbjct: 537 QINPTKASDPGLVYEVETEDYLKMLCAEGFDSTTLTTTSGQNVTCSERTEV--KDLNYPT 594
Query: 604 IAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFESVNDKKSF 663
+ V +PF++ F RTVTNVG N+TYKA V +++I++ P+ L F + +KKSF
Sbjct: 595 MTTFVSSLDPFNVTFKRTVTNVGFPNSTYKASVVPLQPELQISIEPEILRFGFLEEKKSF 654
Query: 664 VVTVDGAILQANHTVSASLLWSDGTHNVRSPIVVYTNQ 701
VVT+ G L+ VS+S++WSDG+H+VRSPIV Y+ Q
Sbjct: 655 VVTISGKELKDGSFVSSSVVWSDGSHSVRSPIVAYSIQ 692
|
|
| TAIR|locus:2168434 SBT4.13 "AT5G59120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1730 (614.0 bits), Expect = 3.5e-178, P = 3.5e-178
Identities = 360/709 (50%), Positives = 471/709 (66%)
Query: 2 QVCIVYMGSLPA-GEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQN 60
QV IVYMGSL + +Y+P + H+++LQE +S LVRSY+RSFNGFAA+LT+ E+
Sbjct: 30 QVYIVYMGSLSSRADYTPTSDHMNILQEVTGESSIEGRLVRSYKRSFNGFAARLTESERE 89
Query: 61 RISRMDGIVSVFPSKTLQLQTTRSWDFMGFPETVK--REPTVESDMIIGVLDNGIWPESD 118
R+++M G+VSVFP+K LQLQTT SWDFMG E +K R PTVESD IIGV+D+GI PES
Sbjct: 90 RVAKMVGVVSVFPNKKLQLQTTTSWDFMGLKEGIKTKRNPTVESDTIIGVIDSGITPESQ 149
Query: 119 MFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAG 178
F DK FGPPP+KWKG C GG+NFTCNNK+IGAR Y+ TR+ GHGTH AS AAG
Sbjct: 150 SFSDKGFGPPPQKWKG-VCSGGKNFTCNNKLIGARDYTS-EGTRDMD-GHGTHTASTAAG 206
Query: 179 NLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEXXXXXXXXXXXXXGVDIILTG 238
N VV ASF G+ G VRG VP++R+AAY+VC P C+ GVD+I
Sbjct: 207 NAVVDASFFGIGNGTVRGGVPASRVAAYKVCT-PTGCSSEALLSAFDDAIADGVDLITIS 265
Query: 239 ATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRP 298
A F D +AIGAFHAM KG+LT GN GPKP S VAPWILTVA S+ +R
Sbjct: 266 IGDKTASMFQNDPIAIGAFHAMAKGVLTVNSAGNSGPKPISVSGVAPWILTVAASTTNRG 325
Query: 299 FIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVK 358
F+ K +LG+G TLVG +VN + MKG +PL YGK+ AS C ++ C L C+D++ VK
Sbjct: 326 FVTKVVLGNGKTLVGKSVNAYEMKGKDYPLVYGKSAASSACDAESAGLCELSCVDKSRVK 385
Query: 359 GKILLCDNFRGDVETFRVGALGSI-QPASTIMSHPTPFPTVILKMEDFERVKLYINSTEK 417
GKIL+C G VGA+G I + ++ P P L EDFE + Y+ ST+
Sbjct: 386 GKILVCGGPGGLKIVESVGAVGLIYRTPKPDVAFIHPLPAAGLLTEDFESLVSYLESTDS 445
Query: 418 PQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHP 477
PQ +L++ AI + +PV+ FS RGP+ I DI+KPDI+AP V+ILAAY+ PS
Sbjct: 446 PQAIVLKTEAIFNRTSPVIASFSSRGPNTIAVDILKPDITAPGVEILAAYSPAGEPSQD- 504
Query: 478 MDHRFVKYNILSGTSIXXXXXXXXXXYVRSFHPDWSPSSIKSALMTTALLMN--GTVNRG 535
D R VKY++LSGTS+ YV++F+P WSPS I+SA+MTTA +N GT
Sbjct: 505 -DTRHVKYSVLSGTSMSCPHVAGVAAYVKTFNPKWSPSMIQSAIMTTAWPVNATGTGIAS 563
Query: 536 REFDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNSSCPEGTSIA 595
EF YGSGH+DP+ A+NPGLVYE+ + D+I LCGM Y+ +++ISG+ +C E I
Sbjct: 564 TEFAYGSGHVDPIAASNPGLVYELDKSDHIAFLCGMNYTSQVLKVISGETVTCSEAKKIL 623
Query: 596 TKDLNLPSIAAQVEVHNP-FSIKFLRTVTNVGLANTTYKAEVKT---TSIDVKINVTPDA 651
++LN PS++A++ F++ F RT+TNVG N+TY ++V + +DVKI TP
Sbjct: 624 PRNLNYPSMSAKLSGSGTTFTVTFNRTLTNVGTPNSTYTSKVVAGHGSKLDVKI--TPSV 681
Query: 652 LSFESVNDKKSFVVTVDGAILQANHTVSASLLWSDGTHNVRSPIVVYTN 700
LSF++VN+K+SF VTV G+ L + SA+L+WSDGTHNVRSPIVVYT+
Sbjct: 682 LSFKTVNEKQSFTVTVTGSNLDSEVPSSANLIWSDGTHNVRSPIVVYTS 730
|
|
| TAIR|locus:2153296 AT5G59100 "AT5G59100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1724 (611.9 bits), Expect = 1.5e-177, P = 1.5e-177
Identities = 351/709 (49%), Positives = 469/709 (66%)
Query: 2 QVCIVYMGSLPAGE-YSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQN 60
QV IVY+GSLP+ E Y+P++ H+S+LQE +SL + LVRSY++SFNGFAA+LT+ E+
Sbjct: 33 QVYIVYLGSLPSREEYTPMSDHMSILQEITGESLIENRLVRSYKKSFNGFAARLTESERK 92
Query: 61 RISRMDGIVSVFPSKTLQLQTTRSWDFMGFPETVKREPT--VESDMIIGVLDNGIWPESD 118
R++ M+ +VSVFPS+ L+LQTT SW+FMG E +K + T +ESD IIGV+D+GI+PESD
Sbjct: 93 RLAGMERVVSVFPSRKLKLQTTSSWNFMGLKEGIKTKRTRSIESDTIIGVIDSGIYPESD 152
Query: 119 MFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYY---SGIN-TTREYQLGHGTHMAS 174
F D+ FGPPPKKWKG C GG+NFTCNNK+IGAR Y S N T R+Y GHGTH AS
Sbjct: 153 SFSDQGFGPPPKKWKG-TCAGGKNFTCNNKVIGARDYTAKSKANQTARDYS-GHGTHTAS 210
Query: 175 IAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEXXXXXXXXXXXXXGVDI 234
IAAGN V ++F GL G RG VP+ARIA Y+VC C+ GVD+
Sbjct: 211 IAAGNAVANSNFYGLGNGTARGGVPAARIAVYKVCDNEG-CDGEAMMSAFDDAIADGVDV 269
Query: 235 ILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSS 294
I F ED +AIGAFHAM G+LT GN GPK ++ APW+ +VA S
Sbjct: 270 ISISIVLDNIPPFEEDPIAIGAFHAMAVGVLTVNAAGNNGPKISTVTSTAPWVFSVAASV 329
Query: 295 IDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDE 354
+R F+ K +LGDG L+G +VN + M G +PL YGK+ A CS +R C CLD
Sbjct: 330 TNRAFMAKVVLGDGKILIGRSVNTYDMNGTNYPLVYGKSAALSTCSVDKARLCEPKCLDG 389
Query: 355 NLVKGKILLCDNFRGDVETFRVGALGSI-QPASTIMSHPTPFPTVILKMEDFERVKLYIN 413
LVKGKI+LCD+ +G +E ++GA+GSI + + FP L +D++ + Y+N
Sbjct: 390 KLVKGKIVLCDSTKGLIEAQKLGAVGSIVKNPEPDRAFIRSFPVSFLSNDDYKSLVSYMN 449
Query: 414 STEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGP 473
ST+ P+ +L+S I + AP+V FS RGPS I DI+KPDI+AP V+ILAAY+ P
Sbjct: 450 STKNPKATVLKSEEISNQRAPLVASFSSRGPSSIVSDILKPDITAPGVEILAAYSPDSSP 509
Query: 474 SNHPMDHRFVKYNILSGTSIXXXXXXXXXXYVRSFHPDWSPSSIKSALMTTALLMN--GT 531
+ D R VKY++LSGTS+ YV++FHP WSPS I+SA+MTTA MN G+
Sbjct: 510 TESEFDTRRVKYSVLSGTSMACPHVAGVAAYVKTFHPQWSPSMIQSAIMTTAWPMNASGS 569
Query: 532 VNRGREFDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNSSCPEG 591
EF YGSGH+DP+ A NPGLVYE+ + D+I LCG+ Y+ + +R+ISGDNS+C +
Sbjct: 570 GFVSTEFAYGSGHVDPIDAINPGLVYELTKADHINFLCGLNYTSDHLRIISGDNSTCTKE 629
Query: 592 TS-IATKDLNLPSIAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEV-KTTSIDVKINVTP 649
S ++LN P+++A+V PF+I F RTVTNVG+ +TY A+V K + I V+P
Sbjct: 630 ISKTLPRNLNYPTMSAKVSGTKPFNITFQRTVTNVGMQKSTYNAKVVKFPGSKLSIKVSP 689
Query: 650 DALSFESVNDKKSFVVTVDGAILQANHTVSASLLWSDGTHNVRSPIVVY 698
LS +S+N+K+SF+VTV + VSA+L+WSDGTHNVRSPI+VY
Sbjct: 690 RVLSMKSMNEKQSFMVTVSSDSIGTKQPVSANLIWSDGTHNVRSPIIVY 738
|
|
| TAIR|locus:2102807 AT3G46850 "AT3G46850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1698 (602.8 bits), Expect = 8.6e-175, P = 8.6e-175
Identities = 361/715 (50%), Positives = 460/715 (64%)
Query: 2 QVCIVYMGSLPAG-EYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQN 60
QV IVYMG+LP+ +Y P++HH S+LQ+ +S D LVR+Y+RSFNGFAA+LT+ E+
Sbjct: 32 QVYIVYMGALPSRVDYMPMSHHTSILQDVTGESSIQDRLVRNYKRSFNGFAARLTESERE 91
Query: 61 RISRMDGIVSVFPSKTLQLQTTRSWDFMGFPE--TVKREPTVESDMIIGVLDNGIWPESD 118
++ MD +VSVFPSK L LQTT SW+FMG E KR P +ESD IIGV+D+GI+PESD
Sbjct: 92 ILASMDEVVSVFPSKNLNLQTTTSWNFMGLKEGKRTKRNPLIESDTIIGVIDSGIYPESD 151
Query: 119 MFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYS----GINTTREYQLGHGTHMAS 174
F K FGPPPKKWKG CKGG NFTCNNK+IGARYY+ G + GHG+H AS
Sbjct: 152 SFSGKGFGPPPKKWKG-VCKGGTNFTCNNKLIGARYYTPKLEGFPESARDNTGHGSHTAS 210
Query: 175 IAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP--CNEXXXXXXXXXXXXXGV 232
IAAGN V SF GL G VRG VP+ARIA Y+VC P C V
Sbjct: 211 IAAGNAVKHVSFYGLGNGTVRGGVPAARIAVYKVCD-PGVIRCTSDGILAAFDDAIADKV 269
Query: 233 DIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAG 292
DII F ED +AIGAFHAM KGILT GN GP+ + V +APW+ TVA
Sbjct: 270 DIITVSLGADAVGTFEEDTLAIGAFHAMAKGILTVNGAGNNGPERRTIVSMAPWLFTVAA 329
Query: 293 SSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCL 352
S+++R FI K +LG+G T+VG +VN F + G K+PL YGK+ AS C ++ CS CL
Sbjct: 330 SNMNRAFITKVVLGNGKTIVGRSVNSFDLNGKKYPLVYGKS-ASSRCDASSAGFCSPGCL 388
Query: 353 DENLVKGKILLCDNFRGDVETFRVGALGSI-----QPASTIMSHPTPFPTVILKMEDFER 407
D VKGKI+LCD R E +GA+ SI + A+++ S FP +L +D+
Sbjct: 389 DSKRVKGKIVLCDTQRNPGEAQAMGAVASIVRNPYEDAASVFS----FPVSVLSEDDYNI 444
Query: 408 VKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAY 467
V Y+NST+ P+ +L+S I + APVV +S RGP+ + DI+KPDI+AP +ILAAY
Sbjct: 445 VLSYVNSTKNPKAAVLKSETIFNQKAPVVASYSSRGPNPLIHDILKPDITAPGSEILAAY 504
Query: 468 TGGWGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXYVRSFHPDWSPSSIKSALMTTALL 527
+ PS D R VKY ++SGTS+ Y+++FHP WSPS I+SA+MTTA
Sbjct: 505 SPYVPPSES--DTRHVKYTVISGTSMSCPHVAGVAAYIKTFHPLWSPSMIQSAIMTTAWP 562
Query: 528 MNGTV---NRGREFDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGD 584
MN + N EF YG+GH+DP+ A +PGLVYE + D+I LCG Y+ K+RLISGD
Sbjct: 563 MNASTSPSNELAEFAYGAGHVDPIAAIHPGLVYEANKSDHITFLCGFNYTGKKLRLISGD 622
Query: 585 NSSCP-EGTSIATKDLNLPSIAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKTTSIDV 643
+SSC E T T++LN PS++AQV PF + F RTVTNVG N TYKA+V + + V
Sbjct: 623 SSSCTKEQTKSLTRNLNYPSMSAQVSGTKPFKVTFRRTVTNVGRPNATYKAKVVGSKLKV 682
Query: 644 KINVTPDALSFESVNDKKSFVVTVDGAILQANHTVSASLLWSDGTHNVRSPIVVY 698
K V P LS +S+ +KKSF VTV GA +A + VSA L+WSDG H VRSPIVVY
Sbjct: 683 K--VVPAVLSLKSLYEKKSFTVTVSGAGPKAENLVSAQLIWSDGVHFVRSPIVVY 735
|
|
| TAIR|locus:2168444 AT5G59130 "AT5G59130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1664 (590.8 bits), Expect = 3.4e-171, P = 3.4e-171
Identities = 347/705 (49%), Positives = 454/705 (64%)
Query: 2 QVCIVYMGSLPA-GEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQN 60
QV IVYMGSLP+ +Y+P++HH+++LQE ++S LVRSY+RSFNGF A+LT+ E+
Sbjct: 34 QVYIVYMGSLPSRADYTPMSHHMNILQEVARESSIEGRLVRSYKRSFNGFVARLTESERE 93
Query: 61 RISRMDGIVSVFPSKTLQLQTTRSWDFMGFPET--VKREPTVESDMIIGVLDNGIWPESD 118
R++ +VSVFP+K L+LQT+ SWDFMG E KR P+VESD IIGV D GIWPES+
Sbjct: 94 RVA----VVSVFPNKKLKLQTSASWDFMGLKEGKGTKRNPSVESDTIIGVFDGGIWPESE 149
Query: 119 MFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAG 178
F DK FGPPPKKWKG C GG+NFTCNNK+IGAR+YS R+ GHGTH ASIAAG
Sbjct: 150 SFSDKGFGPPPKKWKG-ICAGGKNFTCNNKLIGARHYSP-GDARD-STGHGTHTASIAAG 206
Query: 179 NLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEXXXXXXXXXXXXXGVDIILTG 238
N V SF G+ G VRGAVP++RIA YRVC C + GVDII
Sbjct: 207 NAVANTSFFGIGNGTVRGAVPASRIAVYRVC--AGECRDDAILSAFDDAISDGVDIITIS 264
Query: 239 ATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRP 298
+ F +D +AIGAFHAM KGILT GN GP AS +APW+LTVA S+ +R
Sbjct: 265 IGDINVYPFEKDPIAIGAFHAMSKGILTVNAAGNTGPDTASITSLAPWLLTVAASTANRE 324
Query: 299 FIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVK 358
F+ K +LGDG TLVG +VN F +KG KFPL YGK+ A + C+ CLD +LVK
Sbjct: 325 FVSKVVLGDGKTLVGKSVNGFDLKGKKFPLVYGKSAALSLSQAKCAEDCTPECLDASLVK 384
Query: 359 GKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKP 418
GKIL+C+ F V + A+ +I + + P L+ +DFE V Y S + P
Sbjct: 385 GKILVCNRFLPYV-AYTKRAVAAIFEDGSDWAQINGLPVSGLQKDDFESVLSYFKSEKSP 443
Query: 419 QVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPM 478
+ +L+S +I AP + FS RGP+ I DI+KPDI+AP ++ILAA + P
Sbjct: 444 EAAVLKSESIFYQTAPKILSFSSRGPNIIVADILKPDITAPGLEILAANSLRASPF---Y 500
Query: 479 DHRFVKYNILSGTSIXXXXXXXXXXYVRSFHPDWSPSSIKSALMTTALLMNGTVN--RGR 536
D +VKY++ SGTS+ YV++FHP WSPS IKSA+MTTA MN + +
Sbjct: 501 DTAYVKYSVESGTSMSCPHAAGVAAYVKTFHPQWSPSMIKSAIMTTAWSMNASQSGYAST 560
Query: 537 EFDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNSSCPEGTSIAT 596
EF YG+GH+DP+ ATNPGLVYE+ + DY LCGM Y+ ++LISG+ +C E I+
Sbjct: 561 EFAYGAGHVDPIAATNPGLVYEITKTDYFAFLCGMNYNKTTVKLISGEAVTCSE--KISP 618
Query: 597 KDLNLPSIAAQVEVHN-PFSIKFLRTVTNVGLANTTYKAEVKTT-SIDVKINVTPDALSF 654
++LN PS++A++ N F + F RTVTNVG N+TYK++V + + V+P LS
Sbjct: 619 RNLNYPSMSAKLSGSNISFIVTFNRTVTNVGTPNSTYKSKVVLNHGSKLNVKVSPSVLSM 678
Query: 655 ESVNDKKSFVVTVDGAILQANHTVSASLLWSDGTHNVRSPIVVYT 699
+S+N+K+SF VTV + L + SA+L+WSDGTHNVRSPIVVYT
Sbjct: 679 KSMNEKQSFTVTVSASELHSELPSSANLIWSDGTHNVRSPIVVYT 723
|
|
| TAIR|locus:2102792 AT3G46840 "AT3G46840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1647 (584.8 bits), Expect = 2.2e-169, P = 2.2e-169
Identities = 353/715 (49%), Positives = 458/715 (64%)
Query: 2 QVCIVYMGSLPAG-EYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQN 60
Q IVYMG+LPA +Y P++HH S+LQ+ +S D LVR+Y+RSFNGFAA+LT E+
Sbjct: 33 QEYIVYMGALPARVDYMPMSHHTSILQDVTGESSIEDRLVRNYKRSFNGFAARLTKSERE 92
Query: 61 RISRMDGIVSVFPSKTLQLQTTRSWDFMGFPET--VKREPTVESDMIIGVLDNGIWPESD 118
++ MD +VSVFP+K L+LQTT SW+FMG E+ KR +ESD IIGV+D+GI+PESD
Sbjct: 93 ILASMDEVVSVFPNKKLKLQTTTSWNFMGLKESKRTKRNTIIESDTIIGVIDSGIYPESD 152
Query: 119 MFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYS----GI-NTTREYQLGHGTHMA 173
F K FGPPPKKWKG CKGG+NFT NNK+IGARYY+ G + R+Y +GHG+H A
Sbjct: 153 SFSGKGFGPPPKKWKG-VCKGGKNFTWNNKLIGARYYTPKLEGFPESARDY-MGHGSHTA 210
Query: 174 SIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP--CNEXXXXXXXXXXXXXG 231
S AAGN V SF GL G RG VP+ARIA Y+VC P C
Sbjct: 211 STAAGNAVKHVSFYGLGNGTARGGVPAARIAVYKVCD-PGVDGCTTDGILAAFDDAIADK 269
Query: 232 VDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVA 291
VDII + F ED +AIGAFHAM KGIL GN GP+P++ +APW+ TVA
Sbjct: 270 VDIITISIGGDNSSPFEEDPIAIGAFHAMAKGILIVNSAGNSGPEPSTVASIAPWMFTVA 329
Query: 292 GSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFC 351
S+ +R F+ K +LG+G T VG +VN F + G K+PL YGK+ AS C ++ CS C
Sbjct: 330 ASNTNRAFVTKVVLGNGKT-VGRSVNSFDLNGKKYPLVYGKS-ASSSCGAASAGFCSPGC 387
Query: 352 LDENLVKGKILLCDNFRGDVETFRVGALGSI-QPASTIMSHPTPFPTVILKMEDFERVKL 410
LD VKGKI+LCD+ + E +GA+ SI + T ++ FP +L +D+ V
Sbjct: 388 LDSKRVKGKIVLCDSPQNPDEAQAMGAIASIVRSHRTDVASIFSFPVSVLLEDDYNTVLS 447
Query: 411 YINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGG 470
Y+NST+ P+ +L+S I + APVV + RGP+ I PDI+KPDI+AP +I+AAY+
Sbjct: 448 YMNSTKNPKAAVLKSETIFNQRAPVVASYFSRGPNTIIPDILKPDITAPGSEIVAAYSPD 507
Query: 471 WGPSNHPMDHRFVKYNILSGTSIXXXXXXXXXXYVRSFHPDWSPSSIKSALMTTALLMNG 530
PS D R VKY++ +GTS+ Y++SFHP WSPS I+SA+MTTA MN
Sbjct: 508 APPSIS--DTRRVKYSVDTGTSMSCPHVAGVAAYLKSFHPRWSPSMIQSAIMTTAWPMNA 565
Query: 531 TV---NRGREFDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNSS 587
+ N EF YG+GH+DP+ A +PGLVYE + D+I LCG+ Y+ +RLISGD+SS
Sbjct: 566 STSPFNELAEFAYGAGHVDPITAIHPGLVYEANKSDHIAFLCGLNYTAKNLRLISGDSSS 625
Query: 588 CP-EGTSIATKDLNLPSIAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKTTSIDVKIN 646
C E T ++LN PS+ AQV PF + F RTVTNVG N TYKA+V + + VK
Sbjct: 626 CTKEQTKSLPRNLNYPSMTAQVSAAKPFKVIFRRTVTNVGRPNATYKAKVVGSKLKVK-- 683
Query: 647 VTPDALSFESVNDKKSFVVTVDGAILQANHTVSASLLWSDGTHNVRSPIVVY-TN 700
V P LS +S+ +KKSF VT GA +A + VSA L+WSDG H VRSPIVVY TN
Sbjct: 684 VVPAVLSLKSLYEKKSFTVTASGAGPKAENLVSAQLIWSDGVHFVRSPIVVYATN 738
|
|
| TAIR|locus:2153291 SBT4.12 "AT5G59090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1645 (584.1 bits), Expect = 3.6e-169, P = 3.6e-169
Identities = 345/707 (48%), Positives = 451/707 (63%)
Query: 2 QVCIVYMGSLPA-GEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQN 60
QV IVYMGSL + +Y P + H+S+LQ+ +S LVRSY+RSFNGFAA+LT+ E+
Sbjct: 31 QVYIVYMGSLSSRADYIPTSDHMSILQQVTGESSIEGRLVRSYKRSFNGFAARLTESERT 90
Query: 61 RISRMDGIVSVFPSKTLQLQTTRSWDFMGFPE--TVKREPTVESDMIIGVLDNGIWPESD 118
I+ ++G+VSVFP+K LQL TT SWDFMG E KR +ESD IIGV+D GIWPES
Sbjct: 91 LIAEIEGVVSVFPNKILQLHTTTSWDFMGVKEGKNTKRNLAIESDTIIGVIDTGIWPESK 150
Query: 119 MFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAG 178
F DK FGPPPKKWKG C GG+NFTCNNK+IGAR Y+ TR+ GHGTH AS AAG
Sbjct: 151 SFSDKGFGPPPKKWKG-VCSGGKNFTCNNKLIGARDYTS-EGTRDTS-GHGTHTASTAAG 207
Query: 179 NLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEXXXXXXXXXXXXXGVDIILTG 238
N V SF G+ G VRG VP++RIAAY+VC C+ GVD+I
Sbjct: 208 NAVKDTSFFGIGNGTVRGGVPASRIAAYKVCTDSG-CSSEALLSSFDDAIADGVDLITIS 266
Query: 239 ATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRP 298
+ F F +D +AIGAFHAM KGILT GN GPKP + VAPWI TVA S+ +R
Sbjct: 267 IGFQFPSIFEDDPIAIGAFHAMAKGILTVSSAGNSGPKPTTVSHVAPWIFTVAASTTNRG 326
Query: 299 FIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVK 358
FI K +LG+G TL G +VN F MKG K+PL YGK+ AS C + C+ CL+++ VK
Sbjct: 327 FITKVVLGNGKTLAGRSVNAFDMKGKKYPLVYGKSAASSACDAKTAALCAPACLNKSRVK 386
Query: 359 GKILLCDNFRGDVETFRVGALGSIQ--PASTI-MSHPTPFPTVILKMEDFERVKLYINST 415
GKIL+C G VGA+ I P + +H P LK +DF+ + YI S
Sbjct: 387 GKILVCGGPSGYKIAKSVGAIAIIDKSPRPDVAFTHHLPASG--LKAKDFKSLVSYIESQ 444
Query: 416 EKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSN 475
+ PQ +L++ I + +PV+ FS RGP+ I DI+KPDI+AP V+ILAA++ PS
Sbjct: 445 DSPQAAVLKTETIFNRTSPVIASFSSRGPNTIAVDILKPDITAPGVEILAAFSPNGEPSE 504
Query: 476 HPMDHRFVKYNILSGTSIXXXXXXXXXXYVRSFHPDWSPSSIKSALMTTA--LLMNGTVN 533
D R VKY++ SGTS+ YV++F+P WSPS I+SA+MTTA + G
Sbjct: 505 D--DTRRVKYSVFSGTSMACPHVAGVAAYVKTFYPRWSPSMIQSAIMTTAWPVKAKGRGI 562
Query: 534 RGREFDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNSSCPEGTS 593
EF YG+GH+DP+ A NPGLVYE+ + D+I LCGM Y+ +++ISGD C +
Sbjct: 563 ASTEFAYGAGHVDPMAALNPGLVYELDKADHIAFLCGMNYTSKTLKIISGDTVKCSKKNK 622
Query: 594 IATKDLNLPSIAAQVE-VHNPFSIKFLRTVTNVGLANTTYKAEVKTT-SIDVKINVTPDA 651
I ++LN PS++A++ + FS+ F RT+TNVG N+TYK++V + I VTP
Sbjct: 623 ILPRNLNYPSMSAKLSGTDSTFSVTFNRTLTNVGTPNSTYKSKVVAGHGSKLSIKVTPSV 682
Query: 652 LSFESVNDKKSFVVTVDGAILQANHTVSASLLWSDGTHNVRSPIVVY 698
L F++VN+K+SF VTV G+ + + SA+L+WSDGTHNVRSPIVVY
Sbjct: 683 LYFKTVNEKQSFSVTVTGSDVDSEVPSSANLIWSDGTHNVRSPIVVY 729
|
|
| TAIR|locus:2154528 AT5G58840 "AT5G58840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 1.9e-164, Sum P(2) = 1.9e-164
Identities = 175/337 (51%), Positives = 220/337 (65%)
Query: 2 QVCIVYMGSLPAG--EYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQ 59
QV +VYMGSLP+ EY+P++HH+S+LQE +S LVRSY+RSFNGFAA+LT+ E+
Sbjct: 33 QVYVVYMGSLPSSRLEYTPMSHHMSILQEVTGESSVEGRLVRSYKRSFNGFAARLTESER 92
Query: 60 NRISRMDGIVSVFPSKTLQLQTTRSWDFMGFPE--TVKREPTVESDMIIGVLDNGIWPES 117
R++ M+G+VSVFP +LQTT SWDF+G E KR +ESD IIG +D+GIWPES
Sbjct: 93 ERVAEMEGVVSVFPDINYKLQTTASWDFLGLKEGKNTKRNLAIESDTIIGFIDSGIWPES 152
Query: 118 DMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAA 177
+ F DK FGPPPKKWKG C G+NFTCNNK+IGAR Y+ TR+ + GHGTH AS AA
Sbjct: 153 ESFSDKGFGPPPKKWKG-VCSAGKNFTCNNKLIGARDYTN-EGTRDIE-GHGTHTASTAA 209
Query: 178 GNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEXXXXXXXXXXXXXGVDIILT 237
GN V SF G+ G RG VP++RIAAY+ C C GVD+I
Sbjct: 210 GNAVKNTSFYGIGNGTARGGVPASRIAAYKACS-EMGCTTESVLSAFDDAIADGVDLISI 268
Query: 238 GATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDR 297
+ D +AIGAFHAM KGILT GN GP P S + VAPWILTVA S+ +R
Sbjct: 269 SLGANLVRTYETDPIAIGAFHAMVKGILTVQSAGNGGPNPGSVMSVAPWILTVAASNTNR 328
Query: 298 PFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTN 334
F+ K +LG+G T VG ++N F +KG +PL G T+
Sbjct: 329 GFVTKVVLGNGKTFVGKSLNAFDLKGKNYPLYGGSTD 365
|
|
| TAIR|locus:2154513 AT5G58830 "AT5G58830" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 875 (313.1 bits), Expect = 5.1e-164, Sum P(2) = 5.1e-164
Identities = 175/333 (52%), Positives = 222/333 (66%)
Query: 2 QVCIVYMGSLPAG-EYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQN 60
QV +VYMGSLP+ Y+P+++H+++LQE V SY+RSFNGF+A LT+ E+
Sbjct: 32 QVYVVYMGSLPSQPNYTPMSNHINILQE---------VTGESYKRSFNGFSALLTESERE 82
Query: 61 RISRMDGIVSVFPSKTLQLQTTRSWDFMGFPE--TVKREPTVESDMIIGVLDNGIWPESD 118
++ M+G+VSVF SK +LQTT SWDFMG E KR VESD IIG +D+GIWPES+
Sbjct: 83 GVAEMEGVVSVFRSKNYKLQTTASWDFMGMKEGKNTKRNFAVESDTIIGFIDSGIWPESE 142
Query: 119 MFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAG 178
F DK FGPPPKKWKG CKGG+NFTCNNK+IGAR Y+ TR+ Q GHGTH S AAG
Sbjct: 143 SFSDKGFGPPPKKWKG-VCKGGKNFTCNNKLIGARDYTS-EGTRDLQ-GHGTHTTSTAAG 199
Query: 179 NLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEXXXXXXXXXXXXXGVDIILTG 238
N V SF G+ G RG VP++R+AAY+VC C++ GVD+I
Sbjct: 200 NAVADTSFFGIGNGTARGGVPASRVAAYKVCTITG-CSDDNVLSAFDDAIADGVDLISVS 258
Query: 239 ATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRP 298
+ +AED +AIGAFHAM KGILT GN GP P + V VAPW+LTVA ++ +R
Sbjct: 259 LGGDYPSLYAEDTIAIGAFHAMAKGILTVHSAGNAGPNPTTVVSVAPWMLTVAATTTNRR 318
Query: 299 FIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYG 331
F+ K +LG+G TLVG +VN F +KG K+PL YG
Sbjct: 319 FLTKVVLGNGKTLVGKSVNAFDLKGKKYPLEYG 351
|
|
| TAIR|locus:2154503 AT5G58820 "AT5G58820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 918 (328.2 bits), Expect = 2.8e-163, Sum P(2) = 2.8e-163
Identities = 191/368 (51%), Positives = 238/368 (64%)
Query: 2 QVCIVYMGSLPAG-EYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQN 60
QV +VYMGSLP+ EY+PL+HH+S+LQE DS LVRSY+RSFNGFAA+LT+ E+
Sbjct: 28 QVYVVYMGSLPSLLEYTPLSHHMSILQEVTGDSSVEGRLVRSYKRSFNGFAARLTESERI 87
Query: 61 RISRMDGIVSVFPSKTLQLQTTRSWDFMGFPE--TVKREPTVESDMIIGVLDNGIWPESD 118
R++ M+G+VSVFP+ +LQTT SWDF+G E KR +ESD IIG +D+GIWPES+
Sbjct: 88 RVAEMEGVVSVFPNINYKLQTTASWDFLGLKEGKNTKRNLAIESDTIIGFIDSGIWPESE 147
Query: 119 MFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAG 178
F DK FGPPPKKWKG C GG+NFTCNNK+IGAR Y+ TR+ Q GHGTH AS AAG
Sbjct: 148 SFSDKGFGPPPKKWKG-VCSGGKNFTCNNKLIGARDYTS-EGTRDLQ-GHGTHTASTAAG 204
Query: 179 NLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEXXXXXXXXXXXXXGVDIILTG 238
N V ASF G+ G RG VP++RIAAY+VC C GVD+I
Sbjct: 205 NAVADASFFGIGNGTARGGVPASRIAAYKVCSEK-DCTAASLLSAFDDAIADGVDLISIS 263
Query: 239 ATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRP 298
F + +DA+AIGAFHA KGILT GN G P++T VAPWIL+VA S+ +R
Sbjct: 264 LASEFPQKYYKDAIAIGAFHANVKGILTVNSAGNSGSFPSTTASVAPWILSVAASNTNRG 323
Query: 299 FIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKT-NASYPCSELASRQCSLFCLDENLV 357
F K +LG+G TLVG +VN F +KG K+PL YG N S ++ S F +
Sbjct: 324 FFTKVVLGNGKTLVGRSVNSFDLKGKKYPLVYGDNFNESLVQGKIL---VSKFPTSSKVA 380
Query: 358 KGKILLCD 365
G IL+ D
Sbjct: 381 VGSILIDD 388
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 706 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-84 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 3e-24 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 2e-19 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 2e-17 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 1e-13 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 2e-12 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 2e-12 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 3e-12 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 3e-12 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 3e-12 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 4e-12 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 7e-12 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 1e-11 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 2e-11 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 4e-11 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 2e-09 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 2e-09 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 2e-09 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 3e-09 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 9e-09 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 2e-08 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 2e-08 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 1e-07 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 6e-07 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 1e-06 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 2e-06 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 2e-06 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 2e-06 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 1e-05 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 2e-04 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 8e-04 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 0.001 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 0.002 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 269 bits (689), Expect = 1e-84
Identities = 116/249 (46%), Positives = 138/249 (55%), Gaps = 34/249 (13%)
Query: 77 LQLQTTRSWDFMGFPETVKREPTVES----DMIIGVLDNGIWPESDMFDDKSFGPPPKKW 132
QL TTRS DF+G P + +IIGVLD GIWPE F D GP P W
Sbjct: 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTW 60
Query: 133 KGGACKGGQNFT---CNNKIIGARYYS-------GINTTREY-----QLGHGTHMASIAA 177
G C G++F CNNK+IGARY+S G N+ EY GHGTH AS AA
Sbjct: 61 PG-DCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAA 119
Query: 178 GNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP---CNEADILAAFDDAIADGVDI 234
GN+VV AS G A G G P ARIA Y+VC WP C +DILAA D AIADGVD+
Sbjct: 120 GNVVVNASVGGFAFGTASGVAPRARIAVYKVC---WPDGGCFGSDILAAIDQAIADGVDV 176
Query: 235 ILTGATY---GFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVA 291
I +Y G + D ED +AI HA+E GI A GN GP ++ VAPW+ TVA
Sbjct: 177 I----SYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVA 232
Query: 292 GSSIDRPFI 300
S++ +P I
Sbjct: 233 ASTL-KPDI 240
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 3e-24
Identities = 40/74 (54%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 452 IKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPD 511
+KPDI+AP V ILAA+T D R + +SGTS+AS AG AA ++S HPD
Sbjct: 236 LKPDIAAPGVDILAAWTPEGADPG---DARGEDFAFISGTSMASPHVAGVAALLKSAHPD 292
Query: 512 WSPSSIKSALMTTA 525
WSP++IKSALMTTA
Sbjct: 293 WSPAAIKSALMTTA 306
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 2e-19
Identities = 48/128 (37%), Positives = 62/128 (48%), Gaps = 15/128 (11%)
Query: 425 SMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVK 484
S A V P S RGP IKPDI AP V I++ G
Sbjct: 181 STVADVAEADTVGPSSSRGPPTS-DSAIKPDIVAPGVDIMSTAPGSGT-----------G 228
Query: 485 YNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTA--LLMNGTVNRGREFDYGS 542
Y +SGTS+A+ AGAAA ++ HPDWSP+ IK+ALM TA L + V G+
Sbjct: 229 YARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGVVYP-VSRQGA 287
Query: 543 GHIDPVKA 550
G +D ++A
Sbjct: 288 GRVDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 57/207 (27%), Positives = 84/207 (40%), Gaps = 26/207 (12%)
Query: 102 SDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTT 161
+ + V+D GI F P K KGG + + R Y
Sbjct: 2 KGVKVAVIDTGIDYTHPDLGGPGF--PNDKVKGGYDFVDDD----YDPMDTRPYPSPLGD 55
Query: 162 --REYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEAD 219
GHGTH+A I AGN V + G+A P A + AY+V
Sbjct: 56 ASAGDATGHGTHVAGIIAGNGVNVGTIKGVA--------PKADLYAYKVLGPGGSGTTDV 107
Query: 220 ILAAFDDAIADGVDII---LTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPK 276
I+AA + A+ DG+D+I L G++ D DA+AI A++ G++ GN GP
Sbjct: 108 IIAAIEQAVDDGMDVINLSL-GSSVNGPDD--PDAIAINN--AVKAGVVVVAAAGNSGPA 162
Query: 277 PAS--TVVVAPWILTVAGSSIDRPFID 301
P + + AP +TV S++
Sbjct: 163 PYTIGSPATAPSAITVGASTVADVAEA 189
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 439 FSGRGPSKITPD-IIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAF 497
FS RGP T D IKPD+ AP I++ + G P F SGTS+A+
Sbjct: 183 FSSRGP---TGDGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEM----SGTSMATPH 235
Query: 498 AAGAAAYVRSFHPDWSPSSIKSALMTTA 525
+GA A + +P +P +K L TA
Sbjct: 236 VSGAIALLLQANPILTPDEVKCILRDTA 263
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-12
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 5 IVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQNRISR 64
IV + +H ++ A ++ SY+ FNGFAAKLT+EE ++ +
Sbjct: 3 IVKFKDGVSKAAVFSSHKSWHAS--SKEEAAGASILYSYKHGFNGFAAKLTEEEAEKLRK 60
Query: 65 MDGIVSVFPSKTLQLQ 80
+ V P + ++L
Sbjct: 61 HPDVEYVEPDQVVELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 2e-12
Identities = 40/132 (30%), Positives = 56/132 (42%), Gaps = 21/132 (15%)
Query: 304 ILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILL 363
LG+G T+VG ++ P +K +PL Y N+ ++ + C LD + VKGKI+L
Sbjct: 3 TLGNGKTIVGQSLYPGNLK--TYPLVYKSANSG----DVDASLCLPGSLDPSKVKGKIVL 56
Query: 364 CDNFRGDVETF--------RVGALGSI---QPASTIMSH--PTPFPTVILKMEDFERVKL 410
CD RG + G G I P + P V + ED +
Sbjct: 57 CD--RGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILS 114
Query: 411 YINSTEKPQVHI 422
YINST P I
Sbjct: 115 YINSTSNPTATI 126
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 3e-12
Identities = 48/221 (21%), Positives = 72/221 (32%), Gaps = 40/221 (18%)
Query: 105 IIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREY 164
+ V+D G+ P+ D G GG + N
Sbjct: 2 TVAVIDTGVDPDHPDLDGLFGGGD----------GGNDDDDNENGPTDPDDGN------- 44
Query: 165 QLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAF 224
GHGTH+A I A + G G P A++ +V + +DI AA
Sbjct: 45 --GHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAI 93
Query: 225 DDAIAD-GVDIIL--TGATYGFAFDFAEDAVAIGAFHAMEK-GILTAVPTGNMGP---KP 277
D A AD G D+I G +A+ +A+ K G+L GN GP
Sbjct: 94 DYAAADQGADVINLSLGGPGSPPSSALSEAID----YALAKLGVLVVAAAGNDGPDGGTN 149
Query: 278 ASTVVVAPWILTVAGS-SIDRPFIDKAILGDGTTLVGDAVN 317
+P ++ V P + G G + +
Sbjct: 150 IGYPAASPNVIAVGAVDRDGTPASPSSNGGAGVDIAAPGGD 190
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 16/114 (14%)
Query: 439 FSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFA 498
FS G KPDI AP IL++ GG Y+ SGTS+A+
Sbjct: 180 FSNYGGPVDGI---KPDIVAPGGNILSSGPGGDLGG----------YDSHSGTSMAAPLV 226
Query: 499 AGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATN 552
AGAAA + S +P +P ++++ L+TTA + G + +G G ++ KA
Sbjct: 227 AGAAALLLSANPSLTPETLRALLVTTATDLGSM---GLDRSFGYGLLNLGKAVK 277
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 23/112 (20%)
Query: 439 FSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFA 498
FS GP D++AP I++ GG G + SGTS A+ F
Sbjct: 193 FSLPGP--------WVDLAAPGENIVSLSPGGDGLATT------------SGTSFAAPFV 232
Query: 499 AGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKA 550
+G AA VRS PD + + ++ + TA + GR+ G G +DPV A
Sbjct: 233 SGTAALVRSRFPDLTAAQVRRRIEATA---DHPARGGRDDYVGYGVVDPVAA 281
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 4e-12
Identities = 37/93 (39%), Positives = 42/93 (45%), Gaps = 21/93 (22%)
Query: 439 FSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFA 498
FSGRGP IKPDI+AP V IL A GG Y SGTS+A+A
Sbjct: 362 FSGRGP--TRDGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIV 406
Query: 499 AGAAA------YVRSFHPDWSPSSIKSALMTTA 525
AGA A VR P IK+ L+ A
Sbjct: 407 AGACALLLQWGIVRGNDPYLYGEKIKTYLIRGA 439
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 7e-12
Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 22/184 (11%)
Query: 104 MIIGVLDNGIWPESDMF----DDKSFGPPPKKWKGGACKGGQNFTCNNKII-GARYYSGI 158
M++ V+D+G+ P D F D K+ + K G N K+ Y
Sbjct: 13 MVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNN 72
Query: 159 NTTRE--YQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRV---CHYPW 213
+ + HG H+A I AGN + +G ++G P A++ A +V
Sbjct: 73 DDILDEDDGSSHGMHVAGIVAGNGDEEDNGEG-----IKGVAPEAQLLAMKVFSNPEGGS 127
Query: 214 PCNEADILAAFDDAIADGVDII---LTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPT 270
+ A +DA+ G D+I L G+T GF + AI A E G++ V
Sbjct: 128 -TYDDAYAKAIEDAVKLGADVINMSL-GSTAGFVDLDDPEQQAIKR--AREAGVVVVVAA 183
Query: 271 GNMG 274
GN G
Sbjct: 184 GNDG 187
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 1e-11
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 443 GPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAA 502
P + KPD++AP V + +A G G Y LSGTS+A+ AG A
Sbjct: 180 APDSPPDEYTKPDVAAPGVDVYSARQGANGDGQ---------YTRLSGTSMAAPHVAGVA 230
Query: 503 AYVRSFHPDWSPSSIKSALMTTA 525
A + + HPD SP IK AL TA
Sbjct: 231 ALLAAAHPDLSPEQIKDALTETA 253
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 414 STEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPD-IIKPDISAPAVQILAAYTGGWG 472
++ P V + D + V FS RGP T D IKPD+ AP IL+A +GG G
Sbjct: 179 ASNNPSVSNGEGGLGQSDNSDTVASFSSRGP---TYDGRIKPDLVAPGTGILSARSGGGG 235
Query: 473 PSNHPMDHRFVKYNILSGTSIASAFAAGAAA-----YVRSFHPDWSPSSIKSALMTTALL 527
+ Y SGTS+A+ AGAAA +V ++P + + +AL+ ALL
Sbjct: 236 IGDTSDSA----YTSKSGTSMATPLVAGAAALLRQYFVDGYYP--TKFNPSAALL-KALL 288
Query: 528 MNGTV 532
+N
Sbjct: 289 INSAR 293
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 4e-11
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 440 SGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAA 499
G S + DI+AP IL++ T G G Y LSGTS+A+ A
Sbjct: 168 DGTPASPSSNGGAGVDIAAPGGDILSSPTTGGG-----------GYATLSGTSMAAPIVA 216
Query: 500 GAAAYVRSFHPDWSPSSIKSALMTT 524
G AA + S +PD +P+ +K+AL++T
Sbjct: 217 GVAALLLSANPDLTPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 21/87 (24%)
Query: 438 PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAF 497
FS GP + +++AP V IL+ Y Y LSGTS+A+
Sbjct: 164 SFSSTGP--------EVELAAPGVDILSTYPNN-------------DYAYLSGTSMATPH 202
Query: 498 AAGAAAYVRSFHPDWSPSSIKSALMTT 524
AG AA V S P+ + + ++ AL T
Sbjct: 203 VAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 34/80 (42%), Positives = 40/80 (50%), Gaps = 15/80 (18%)
Query: 431 DAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSG 490
D V+ FS RGPS T IKPDISAP V I +A GG Y SG
Sbjct: 182 DRNDVLADFSSRGPS--TYGRIKPDISAPGVNIRSAVPGG-------------GYGSSSG 226
Query: 491 TSIASAFAAGAAAYVRSFHP 510
TS+A+ AG AA + S +P
Sbjct: 227 TSMAAPHVAGVAALLWSANP 246
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 165 QLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAF 224
GHGTH+A I A N ++ G P A + AYRV E I+AAF
Sbjct: 67 CQGHGTHVAGIIAAN---PNAY------GFTGVAPEATLGAYRVFGCSGSTTEDTIIAAF 117
Query: 225 DDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMG 274
A DG D+I A+ G ++ED A+ A ++ G++ + GN G
Sbjct: 118 LRAYEDGADVI--TASLGGPSGWSEDPWAVVASRIVDAGVVVTIAAGNDG 165
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 19/113 (16%)
Query: 452 IKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAA-YVRSFHP 510
+KPD++AP IL+ Y G Y +LSGTS+A+ + AGAAA +++ H
Sbjct: 202 LKPDVAAPGGNILSTYPLAGG-----------GYAVLSGTSMATPYVAGAAALLIQARHG 250
Query: 511 DWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATNPGLV--YEVLE 561
SP+ ++ L +TA + + G PV GLV Y+ L
Sbjct: 251 KLSPAELRDLLASTAKPLP--WSDGTSALPDL---APVAQQGAGLVNAYKALY 298
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 9e-09
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 20/88 (22%)
Query: 438 PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAF 497
FS G + D++AP V IL+ GG Y +SGTS+A+
Sbjct: 191 SFSNYGKKTV-------DLAAPGVDILSTSPGG-------------GYGYMSGTSMATPH 230
Query: 498 AAGAAAYVRSFHPDWSPSSIKSALMTTA 525
AGAAA + S +P+ + + IK A++++A
Sbjct: 231 VAGAAALLLSLNPNLTAAQIKDAILSSA 258
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 39/126 (30%), Positives = 54/126 (42%), Gaps = 28/126 (22%)
Query: 439 FSGRGPSKITPDI-IKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAF 497
FS GP TPD+ +KPDI+AP I + Y +SGTS+AS
Sbjct: 237 FSSWGP---TPDLDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPH 280
Query: 498 AAGAAAYVRSF----HPDWSPSS----IKSALMTTALLMNGTVNRGREFD---YGSGHID 546
AGA+A V+ +P S +K+ LM TA + + + G+G ID
Sbjct: 281 VAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSEDTKTYYSPRRQGAGLID 340
Query: 547 PVKATN 552
KA
Sbjct: 341 VAKAIA 346
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 2e-08
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 11/71 (15%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSP 514
DI AP V IL+A+ G LSGTS+A+ AG AAY+ S PD SP
Sbjct: 194 DIFAPGVDILSAW---IGSDT--------ATATLSGTSMAAPHVAGLAAYLLSLGPDLSP 242
Query: 515 SSIKSALMTTA 525
+ +K+ L+ A
Sbjct: 243 AEVKARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 23/116 (19%)
Query: 438 PFSGRGPSKITPDII-KPDISAP--AVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIA 494
P R P TP++ KPD++AP + G GTS A
Sbjct: 177 PVGIRLP---TPEVRQKPDVTAPDGVNGTVDGDGDGPPN--------------FFGTSAA 219
Query: 495 SAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKA 550
+ AAG AA V S +P +P+ I+ AL +TAL M G + GSG +D +A
Sbjct: 220 APHAAGVAALVLSANPGLTPADIRDALRSTALDMGEP---GYDNASGSGLVDADRA 272
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 53/233 (22%), Positives = 84/233 (36%), Gaps = 42/233 (18%)
Query: 102 SDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNN--KIIGARYYSGIN 159
I+GV D G+ F D +F N T KI+ RY S +
Sbjct: 7 KGQIVGVADTGLDTNHCFFYDPNF----------------NKTNLFHRKIV--RYDSLSD 48
Query: 160 TTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRV----CHYPWPC 215
T + GHGTH+A I AG D + +G P A++ + + P
Sbjct: 49 TKDDVD-GHGTHVAGIIAGK-----GNDSSSISLYKGVAPKAKLYFQDIGDTSGNLSSPP 102
Query: 216 NEADILAAFDDAIADGVDIILTGATYGFAFDFA--EDAVAIGAFHAMEKGILTAVPTGNM 273
+ + + DA A ++ ++G + A A F IL GN
Sbjct: 103 DLNKLFSPMYDAGA-----RISSNSWGSPVNNGYTLLARAYDQFAYNNPDILFVFSAGND 157
Query: 274 GPKPASTVVVAPW---ILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKG 323
G ++T+ +LTV + + P + G G + D V F+ +G
Sbjct: 158 GNDGSNTIGSPATAKNVLTVG--ASNNPSVSNGEGGLGQSDNSDTVASFSSRG 208
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 43/192 (22%), Positives = 60/192 (31%), Gaps = 44/192 (22%)
Query: 106 IGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQ 165
+GV+D+GI F + + Y+
Sbjct: 7 VGVIDSGIDLSHPEFAGRVSEA-----------------SYYVAVNDAGYASNGDGD--- 46
Query: 166 LGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVC-HYPWPCNEADILAAF 224
HGTH+A + A DG G + G P A + + R ++ADI AA+
Sbjct: 47 -SHGTHVAGVIAAA------RDG---GGMHGVAPDATLYSARASASAGSTFSDADIAAAY 96
Query: 225 DDAIADGVDII------------LTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGN 272
D A GV II ++ G A +A A A G L GN
Sbjct: 97 DFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALAR-AANAGGLFVFAAGN 155
Query: 273 MGPKPASTVVVA 284
G S A
Sbjct: 156 DGQANPSLAAAA 167
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 45/201 (22%), Positives = 70/201 (34%), Gaps = 43/201 (21%)
Query: 106 IGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQ 165
+ VLD GI FD ++ T +
Sbjct: 6 VAVLDTGIDAPHPDFDG-----RIIRFADFVNTVNGRTT---------------PYDDN- 44
Query: 166 LGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFD 225
GHGTH+A I AG+ G +G P A + +V +E+DI+A D
Sbjct: 45 -GHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGID 96
Query: 226 -------DAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPA 278
V++ L GA ++ ED + + GI+ V GN GP P
Sbjct: 97 WVVENNEKYNIRVVNLSL-GAPPDPSYG--EDPLCQAVERLWDAGIVVVVAAGNSGPGPG 153
Query: 279 STVV--VAPWILTVAGSSIDR 297
+ +P ++TV ++D
Sbjct: 154 TITSPGNSPKVITVG--AVDD 172
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 39/202 (19%), Positives = 66/202 (32%), Gaps = 38/202 (18%)
Query: 105 IIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREY 164
+GVLD GI + G +
Sbjct: 1 TVGVLDTGIDVNHPDL-------------------SGRYIGLAYRNGYDFVDNDPDPTPD 41
Query: 165 Q--LGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILA 222
GHGTH+A I A G+ G+A P+A++ + +V ++++
Sbjct: 42 DDNNGHGTHVAGIIAAGDNNGSGGVGVA--------PNAKLESVKVLPGSGG-TDSELAG 92
Query: 223 AFDDAI--ADGVDII-LTGATYGFAFDFAEDAVAIGAFH-AMEKGILTAVPTGNMGPKPA 278
A + A + + +I ++ A+ A + A KG L V GN G
Sbjct: 93 AIEWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKGSLFVVAAGNGGDYAD 152
Query: 279 STVVVAP---W-ILTVAGSSID 296
+ V P I+TV + +
Sbjct: 153 NNPVSDPASANNIITVGAVTEN 174
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 14/71 (19%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSP 514
D+SAP IL+ G Y +SGTS+A+ AG AA + S P S
Sbjct: 200 DVSAPGGGILSTTPDG-------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSA 245
Query: 515 SSIKSALMTTA 525
S ++ AL TA
Sbjct: 246 SEVRDALKKTA 256
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 35/147 (23%), Positives = 51/147 (34%), Gaps = 36/147 (24%)
Query: 103 DMIIGVLDNGIWPESDMFDDKSF--------------GPPPKKWKGGACKGGQNFTCNNK 148
+++G++D GI F ++ GPPP + GG N
Sbjct: 5 GVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGYYGGGE--YTEEIINAA 62
Query: 149 IIGARYYSGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIA---- 204
+ Y + + E GHGTH+A IAAGN G + +G P A +
Sbjct: 63 LASDNPYDIVPSRDEN--GHGTHVAGIAAGN--------GDNNPDFKGVAPEAELIVVKL 112
Query: 205 ----AYRVCHYP--WPCNEADILAAFD 225
Y Y E DI+ A
Sbjct: 113 KQAKKYLREFYEDVPFYQETDIMLAIK 139
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 36/139 (25%), Positives = 50/139 (35%), Gaps = 41/139 (29%)
Query: 106 IGVLDNGIWPESDMFDD------KSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGIN 159
+ V+D+GI P+ + K+ P G G + G
Sbjct: 4 VAVIDSGIDPDHPDLKNSISSYSKNLVP------KGGYDGKEAGET-----------GDI 46
Query: 160 TTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRV---CHYPWPCN 216
+LGHGT +A A N GN++G P I +YRV C
Sbjct: 47 NDIVDKLGHGTAVAGQIAAN------------GNIKGVAPGIGIVSYRVFGSCGSAESS- 93
Query: 217 EADILAAFDDAIADGVDII 235
I+ A DA DGVD+I
Sbjct: 94 --WIIKAIIDAADDGVDVI 110
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 8e-04
Identities = 27/100 (27%), Positives = 38/100 (38%), Gaps = 14/100 (14%)
Query: 431 DAAPVVHPFSGRGPSKITPDIIKPDISAP----AVQILAAYTGGWG----PSNHPMDHRF 482
+ GP P IKPD+ A A G + P F
Sbjct: 193 VGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGF 250
Query: 483 VKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALM 522
V + GTS A+ AA AA + + P+ SP +I+ AL+
Sbjct: 251 V---TVGGTSFAAPLAARLAAGLFAELPELSPETIR-ALL 286
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSP 514
D+ AP +I + +Y SGTS+A+ +G AA + S++P+ +
Sbjct: 233 DVFAPGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTA 279
Query: 515 SSIKSALMTTAL 526
+K ++ + +
Sbjct: 280 KEVKQIILESGV 291
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 17/96 (17%)
Query: 431 DAAPVVHPFSGRGPSKITPD-IIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILS 489
DA FS GP T D +KPD+ A I + +
Sbjct: 181 DANGNKASFSSIGP---TADGRLKPDVMALGTGIYV-------------INGDGNITYAN 224
Query: 490 GTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTA 525
GTS + AG A + HP+W+ IK A++ +A
Sbjct: 225 GTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 706 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.98 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.92 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.79 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.73 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.92 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 98.85 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 98.8 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.56 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.42 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.2 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.04 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 97.86 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 97.82 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 97.8 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 97.79 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 97.77 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 97.74 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 97.68 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 97.62 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 97.6 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 97.45 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 97.35 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 97.35 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.22 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 97.19 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 97.06 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.0 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 95.5 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 94.11 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 93.79 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 92.89 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 92.74 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 91.94 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 90.75 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 90.12 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 89.69 | |
| PF00345 | 122 | PapD_N: Pili and flagellar-assembly chaperone, Pap | 86.68 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 82.93 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 81.0 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-52 Score=439.50 Aligned_cols=286 Identities=52% Similarity=0.829 Sum_probs=245.7
Q ss_pred ccccccCCccccCCccccccC-----CCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccc---cCce
Q 036374 77 LQLQTTRSWDFMGFPETVKRE-----PTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFT---CNNK 148 (706)
Q Consensus 77 ~~~~~~~s~~~ig~~~~~~~~-----~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~---~n~k 148 (706)
+++++++++++++++ .+|+. +.+|+||+|||||||||++||+|.+.+..+++..|.+ .|..+..+. ||+|
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k 78 (307)
T cd04852 1 YQLHTTRSPDFLGLP-GAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPG-DCVTGEDFNPFSCNNK 78 (307)
T ss_pred CCccccCCHHHcCCC-CCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCC-cccCCCCcCccCcCCe
Confidence 468899999999999 77775 8999999999999999999999999888888899999 898887774 9999
Q ss_pred eEeeeecCC-------------CCCcccccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCC
Q 036374 149 IIGARYYSG-------------INTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPC 215 (706)
Q Consensus 149 ~ig~~~~~~-------------~~~~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~ 215 (706)
+++.++|.. ..++.|. .||||||||||||+...+....|...+.+.||||+|+|+++|+++....+
T Consensus 79 i~g~~~~~~~~~~~~~~~~~~~~~~~~d~-~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~ 157 (307)
T cd04852 79 LIGARYFSDGYDAYGGFNSDGEYRSPRDY-DGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGC 157 (307)
T ss_pred EEEEEEcccchhhccCcccccCCCCCccC-CCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCc
Confidence 999999853 2445777 99999999999999876666666666777999999999999999932558
Q ss_pred CHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccC
Q 036374 216 NEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSI 295 (706)
Q Consensus 216 ~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~ 295 (706)
..+++++||++|++++++|||||||.... ....+.+..++..+.++|+++|+||||+|+...+.++..||+++||+.+
T Consensus 158 ~~~~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~- 235 (307)
T cd04852 158 FGSDILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST- 235 (307)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc-
Confidence 89999999999999999999999999832 4456778888888999999999999999987777888899999998632
Q ss_pred CcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheee
Q 036374 296 DRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFR 375 (706)
Q Consensus 296 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~ 375 (706)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCc
Q 036374 376 VGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPD 455 (706)
Q Consensus 376 ~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPD 455 (706)
+|||
T Consensus 236 ----------------------------------------------------------------------------~~~d 239 (307)
T cd04852 236 ----------------------------------------------------------------------------LKPD 239 (307)
T ss_pred ----------------------------------------------------------------------------Cccc
Confidence 3779
Q ss_pred eEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 036374 456 ISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 456 i~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 526 (706)
|+|||.+|++++.... ..........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 240 i~apG~~i~~~~~~~~---~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 240 IAAPGVDILAAWTPEG---ADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred eeeccCceeecccCcc---ccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999986421 1111223467999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=445.36 Aligned_cols=292 Identities=20% Similarity=0.192 Sum_probs=213.3
Q ss_pred cCCcccccc--CCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccc--cCc----eeEeeeecCCCC
Q 036374 88 MGFPETVKR--EPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFT--CNN----KIIGARYYSGIN 159 (706)
Q Consensus 88 ig~~~~~~~--~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~--~n~----k~ig~~~~~~~~ 159 (706)
++++ ++|+ .+.+|+||+|||||||||++||||.+. +..-+....| .++. +++ .+.|..+.++..
T Consensus 301 i~~~-~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~n-i~~n~~el~G------rdgiDdD~nG~vdd~~G~nfVd~~~ 372 (639)
T PTZ00262 301 TRLD-ETQELIEPHEVNDTNICVIDSGIDYNHPDLHDN-IDVNVKELHG------RKGIDDDNNGNVDDEYGANFVNNDG 372 (639)
T ss_pred hCch-HHHHHhhccCCCCcEEEEEccCCCCCChhhhhh-cccccccccC------ccccccccCCcccccccccccCCCC
Confidence 4555 6776 356899999999999999999999853 1110111111 1110 111 122222223356
Q ss_pred CcccccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcc
Q 036374 160 TTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGA 239 (706)
Q Consensus 160 ~~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~Sl 239 (706)
+|.|. .||||||||||||...++. .+.||||+|+|+++|+++....+..+++++||+||++.|++||||||
T Consensus 373 ~P~D~-~GHGTHVAGIIAA~gnN~~--------Gi~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSl 443 (639)
T PTZ00262 373 GPMDD-NYHGTHVSGIISAIGNNNI--------GIVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSF 443 (639)
T ss_pred CCCCC-CCcchHHHHHHhccccCCC--------ceeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEecc
Confidence 78888 9999999999999754322 23899999999999999833337889999999999999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCC--------------ccc----CCCceEEEccccCCcceee
Q 036374 240 TYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPAS--------------TVV----VAPWILTVAGSSIDRPFID 301 (706)
Q Consensus 240 G~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~--------------~~~----~~p~vitVga~~~~~~~~~ 301 (706)
|+.. ....+..++.+|.++|+++|+||||+|..... ++. ..+++|+|||.+.+..
T Consensus 444 G~~~----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~~--- 516 (639)
T PTZ00262 444 SFDE----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDKN--- 516 (639)
T ss_pred ccCC----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCCC---
Confidence 9762 23467788889999999999999999864211 111 2466777777643210
Q ss_pred eEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEE
Q 036374 302 KAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGS 381 (706)
Q Consensus 302 ~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~ 381 (706)
T Consensus 517 -------------------------------------------------------------------------------- 516 (639)
T PTZ00262 517 -------------------------------------------------------------------------------- 516 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCC
Q 036374 382 IQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAV 461 (706)
Q Consensus 382 i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~ 461 (706)
....++.||++|. .++||+|||+
T Consensus 517 --------------------------------------------------~~~s~s~~Snyg~-------~~VDIaAPG~ 539 (639)
T PTZ00262 517 --------------------------------------------------NQYSLSPNSFYSA-------KYCQLAAPGT 539 (639)
T ss_pred --------------------------------------------------CcccccccccCCC-------CcceEEeCCC
Confidence 0012345566652 2349999999
Q ss_pred cEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCC
Q 036374 462 QILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYG 541 (706)
Q Consensus 462 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G 541 (706)
+|+++++. +.|..++|||||||||||+||||++++|+|++.||+++|++||.++.. .+..+|
T Consensus 540 dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~-----~~n~~~ 601 (639)
T PTZ00262 540 NIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPS-----LKNKVK 601 (639)
T ss_pred CeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCC-----CCCccc
Confidence 99999873 569999999999999999999999999999999999999999998754 223344
Q ss_pred C-CCCCccccCCcCcccc
Q 036374 542 S-GHIDPVKATNPGLVYE 558 (706)
Q Consensus 542 ~-G~id~~~Al~~~lv~~ 558 (706)
| |+||+.+|++..+.+.
T Consensus 602 wgG~LDa~kAV~~Ai~~~ 619 (639)
T PTZ00262 602 WGGYLDIHHAVNLAIASK 619 (639)
T ss_pred cCcEEcHHHHHHHHHhcc
Confidence 3 8999999999766543
|
|
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=409.73 Aligned_cols=271 Identities=25% Similarity=0.241 Sum_probs=205.7
Q ss_pred CCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeecc
Q 036374 98 PTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAA 177 (706)
Q Consensus 98 ~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~a 177 (706)
+++|+||+|+|||||||.+||+|.+-..+..+..+.. .+ . .....|. .+|||||||||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~~~----------~~-------~---~~~~~d~-~gHGT~vAgii- 58 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNVNV----------LG-------D---LDGGSGG-GDEGRAMLEII- 58 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcceee----------cc-------c---cCCCCCC-CchHHHHHHHH-
Confidence 5789999999999999999986543211111111100 00 0 1234566 89999999999
Q ss_pred cccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHH
Q 036374 178 GNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAF 257 (706)
Q Consensus 178 g~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~ 257 (706)
.||||+|+|+.+|+.. ..+++++||+||++.|++|||||||......+....+..++.
T Consensus 59 -----------------~GvAP~a~l~~~~~~~-----~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~ 116 (275)
T cd05562 59 -----------------HDIAPGAELAFHTAGG-----GELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVD 116 (275)
T ss_pred -----------------hccCCCCEEEEEecCC-----CHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHHHHHH
Confidence 5899999999988754 478999999999999999999999986333334456788888
Q ss_pred HHHhC-CcEEEEecCCCCCCCC-CcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCC
Q 036374 258 HAMEK-GILTAVPTGNMGPKPA-STVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNA 335 (706)
Q Consensus 258 ~a~~~-Gv~vV~AAGN~G~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~ 335 (706)
++.++ |+++|+||||+|.... ..+...|++|+|||++.+.........+.
T Consensus 117 ~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~~---------------------------- 168 (275)
T cd05562 117 EVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPAP---------------------------- 168 (275)
T ss_pred HHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccccccc----------------------------
Confidence 88887 9999999999998543 34568899999999875531100000000
Q ss_pred CCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcC
Q 036374 336 SYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINST 415 (706)
Q Consensus 336 ~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~ 415 (706)
T Consensus 169 -------------------------------------------------------------------------------- 168 (275)
T cd05562 169 -------------------------------------------------------------------------------- 168 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCC-cEEecccCCCCCCCCCCCCcccceeEeccccch
Q 036374 416 EKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAV-QILAAYTGGWGPSNHPMDHRFVKYNILSGTSIA 494 (706)
Q Consensus 416 ~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 494 (706)
.......+.||++||+. ++++||||+|||. ++.+.+. .+.|..++|||||
T Consensus 169 --------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~-------------~~~~~~~sGTS~A 219 (275)
T cd05562 169 --------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGD-------------GDGPPNFFGTSAA 219 (275)
T ss_pred --------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCc-------------CCceeecccchHH
Confidence 00012356688899987 8899999999975 3444433 3568999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCC
Q 036374 495 SAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATN 552 (706)
Q Consensus 495 aP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~ 552 (706)
||||||++|||+|++|+|+++|||++|++||+++.. +..+..||||+||+.+||+
T Consensus 220 aP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~---~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 220 APHAAGVAALVLSANPGLTPADIRDALRSTALDMGE---PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC---CCCCCCcCcCcccHHHHhh
Confidence 999999999999999999999999999999998764 4567899999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-49 Score=403.97 Aligned_cols=244 Identities=26% Similarity=0.310 Sum_probs=198.5
Q ss_pred ccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCccccee
Q 036374 95 KREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMAS 174 (706)
Q Consensus 95 ~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAg 174 (706)
|+.+++|+||+|||||||||.+||+|.+. ....+| .......|. .||||||||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~--------------~~~~~~------------~~~~~~~d~-~gHGT~VAG 53 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV--------------KERTNW------------TNEKTLDDG-LGHGTFVAG 53 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc--------------cccccc------------CCCCCCCCC-CCcHHHHHH
Confidence 88999999999999999999999999631 001111 111234566 899999999
Q ss_pred ecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHH
Q 036374 175 IAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-CNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVA 253 (706)
Q Consensus 175 i~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~ 253 (706)
||+|+.. .+.||||+|+|+.+|++. ..+ +..+.+++++++|++.+++|||||||... +...++.
T Consensus 54 iIa~~~~-----------~~~GvAp~a~l~~~~v~~-~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~---~~~~~~~ 118 (255)
T cd07479 54 VIASSRE-----------QCLGFAPDAEIYIFRVFT-NNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD---FMDKPFV 118 (255)
T ss_pred HHHccCC-----------CceeECCCCEEEEEEeec-CCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC---CCCcHHH
Confidence 9998731 138999999999999998 444 66788999999999999999999999862 2345666
Q ss_pred HHHHHHHhCCcEEEEecCCCCCCCCC--cccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEec
Q 036374 254 IGAFHAMEKGILTAVPTGNMGPKPAS--TVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYG 331 (706)
Q Consensus 254 ~a~~~a~~~Gv~vV~AAGN~G~~~~~--~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~ 331 (706)
.++.++.++|++||+||||+|+...+ .+...+++|+|||.+.+
T Consensus 119 ~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~----------------------------------- 163 (255)
T cd07479 119 DKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD----------------------------------- 163 (255)
T ss_pred HHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC-----------------------------------
Confidence 77778889999999999999975443 34567889999986532
Q ss_pred cCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHH
Q 036374 332 KTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLY 411 (706)
Q Consensus 332 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~ 411 (706)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCC----CCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeE
Q 036374 412 INSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKI----TPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNI 487 (706)
Q Consensus 412 ~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~----~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~ 487 (706)
+.++.|||+|++.+ .++++||||+|||.+|+++.. .+.|..
T Consensus 164 ----------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~-------------~~~~~~ 208 (255)
T cd07479 164 ----------------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKL-------------KGGCRA 208 (255)
T ss_pred ----------------------CccccccCCCCCcccccCCCCCcCccEEecCCCeecccc-------------CCCeEE
Confidence 45788999996521 267889999999999998765 245889
Q ss_pred eccccchhHHHHHHHHHHHhhCC----CCCHHHHHHHHHhcccccCC
Q 036374 488 LSGTSIASAFAAGAAAYVRSFHP----DWSPSSIKSALMTTALLMNG 530 (706)
Q Consensus 488 ~sGTSmAaP~VAG~aALl~~~~P----~lsp~~ik~~L~~TA~~~~~ 530 (706)
++|||||||||||++|||+|++| .++|.+||++|++||+++++
T Consensus 209 ~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~~ 255 (255)
T cd07479 209 LSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLPG 255 (255)
T ss_pred eccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCCC
Confidence 99999999999999999999999 79999999999999998753
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-48 Score=408.80 Aligned_cols=286 Identities=22% Similarity=0.189 Sum_probs=189.9
Q ss_pred CCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCC--CCCcccccCCCcccceeeccc
Q 036374 101 ESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSG--INTTREYQLGHGTHMASIAAG 178 (706)
Q Consensus 101 G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~--~~~~~D~~~gHGThVAgi~ag 178 (706)
|+||+|+|||||||.+||||.+.... .|.- .|.....++...++.+ ...+.|. +||||||||||||
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~-------~~d~~~~~~~g~d~~~~~~~~~~D~-~gHGThvAGiiag 68 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKL-------KFDYKAYLLPGMDKWGGFYVIMYDF-FSHGTSCASVAAG 68 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Cccc-------ccCcCCCccCCcCCCCCccCCCCCc-cccchhHHHHHhc
Confidence 89999999999999999999643110 0000 0101111111111111 1346788 9999999999999
Q ss_pred ccccCCCcccC-CCcceeeccCCCeEEEEEeecCCCCCCHHHHHH-------HHHHH--HHCCCcEEEEcccCCCCCC--
Q 036374 179 NLVVGASFDGL-AKGNVRGAVPSARIAAYRVCHYPWPCNEADILA-------AFDDA--IADGVDIILTGATYGFAFD-- 246 (706)
Q Consensus 179 ~~~~~~~~~G~-~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~-------ai~~a--i~~gv~VIN~SlG~~~~~~-- 246 (706)
......+.+++ ....+.||||+|+|+++|++.+.+.+....+.. +++|+ .+++++|||||||......
T Consensus 69 ~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~ 148 (311)
T cd07497 69 RGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTG 148 (311)
T ss_pred cCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCccc
Confidence 86432222211 122359999999999999997222233333333 33443 3689999999999862211
Q ss_pred --ChhhHHHHHHHHH-HhCCcEEEEecCCCCCCCCC--cccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCC
Q 036374 247 --FAEDAVAIGAFHA-MEKGILTAVPTGNMGPKPAS--TVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTM 321 (706)
Q Consensus 247 --~~~~~~~~a~~~a-~~~Gv~vV~AAGN~G~~~~~--~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 321 (706)
...+.....++.+ .++|+++|+||||+|+...+ .+..++++|+|||++.....+...
T Consensus 149 ~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~------------------ 210 (311)
T cd07497 149 YAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL------------------ 210 (311)
T ss_pred cccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh------------------
Confidence 1122333333332 37999999999999986444 345789999999987442110000
Q ss_pred CCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEec
Q 036374 322 KGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILK 401 (706)
Q Consensus 322 ~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~ 401 (706)
+..
T Consensus 211 ------~~~----------------------------------------------------------------------- 213 (311)
T cd07497 211 ------FGY----------------------------------------------------------------------- 213 (311)
T ss_pred ------hcc-----------------------------------------------------------------------
Confidence 000
Q ss_pred hhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCc
Q 036374 402 MEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHR 481 (706)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~ 481 (706)
.....+.++.||||||+. ++++||||+|||++|+++.+...... ....
T Consensus 214 ---------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~---~~~~ 261 (311)
T cd07497 214 ---------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGG---ALDG 261 (311)
T ss_pred ---------------------------ccCCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCc---ccCC
Confidence 001235689999999998 89999999999999999876432100 0111
Q ss_pred ccceeEeccccchhHHHHHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 036374 482 FVKYNILSGTSIASAFAAGAAAYVRSFHP------DWSPSSIKSALMTTA 525 (706)
Q Consensus 482 ~~~y~~~sGTSmAaP~VAG~aALl~~~~P------~lsp~~ik~~L~~TA 525 (706)
...|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 262 ~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 262 NEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred CcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 34699999999999999999999999886 689999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-48 Score=415.76 Aligned_cols=307 Identities=27% Similarity=0.295 Sum_probs=232.2
Q ss_pred ccccCCC-CCCCcEEEEEccccCCCCcCCCCCCCCCCCC-----CCCCCcccCCcccccCceeEeeeecC-CCCCc---c
Q 036374 93 TVKREPT-VESDMIIGVLDNGIWPESDMFDDKSFGPPPK-----KWKGGACKGGQNFTCNNKIIGARYYS-GINTT---R 162 (706)
Q Consensus 93 ~~~~~~~-~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~-----~~~g~~~~~g~~f~~n~k~ig~~~~~-~~~~~---~ 162 (706)
++|+++. +|+||+|||||||||++||+|.+....+... .+.. .+..+.....+++++..++|. +..++ .
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKK-KAGIGYGKYYNEKVPFAYNYADNNDDILDED 79 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhh-cccCCCCcccccCCCeeEcCCCCCCccCCCC
Confidence 3798887 9999999999999999999998654332110 1122 233344445677777776664 22223 3
Q ss_pred cccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecC--CCCCCHHHHHHHHHHHHHCCCcEEEEccc
Q 036374 163 EYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHY--PWPCNEADILAAFDDAIADGVDIILTGAT 240 (706)
Q Consensus 163 D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~--~~g~~~~~i~~ai~~ai~~gv~VIN~SlG 240 (706)
|. .+|||||||||+|...+.. ....+.||||+|+|+.+|++.. ...+....++++++++++.|++|||||||
T Consensus 80 ~~-~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G 153 (346)
T cd07475 80 DG-SSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLG 153 (346)
T ss_pred CC-CCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 55 8999999999999864321 1233499999999999999972 23477888999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCc----------------ccCCCceEEEccccCCcceeeeEE
Q 036374 241 YGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPAST----------------VVVAPWILTVAGSSIDRPFIDKAI 304 (706)
Q Consensus 241 ~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~----------------~~~~p~vitVga~~~~~~~~~~~~ 304 (706)
...........+..++.++.++|+++|+||||+|...... +...+++|+||+.+...
T Consensus 154 ~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~~------- 226 (346)
T cd07475 154 STAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKKV------- 226 (346)
T ss_pred cCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeeccccc-------
Confidence 9744334556778888889999999999999998654221 12345566666544110
Q ss_pred eCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEec
Q 036374 305 LGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQP 384 (706)
Q Consensus 305 ~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~ 384 (706)
T Consensus 227 -------------------------------------------------------------------------------- 226 (346)
T cd07475 227 -------------------------------------------------------------------------------- 226 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEE
Q 036374 385 ASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQIL 464 (706)
Q Consensus 385 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~ 464 (706)
.....+.++.||+|||+. ..++||||+|||.+|+
T Consensus 227 --------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdi~apG~~i~ 260 (346)
T cd07475 227 --------------------------------------------PNPNGGQMSGFSSWGPTP--DLDLKPDITAPGGNIY 260 (346)
T ss_pred --------------------------------------------CCCCCCccCCCcCCCCCc--ccCcCCeEEeCCCCeE
Confidence 002235688999999998 8999999999999999
Q ss_pred ecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhh----CCCCCHHH----HHHHHHhcccccCCC---CC
Q 036374 465 AAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSF----HPDWSPSS----IKSALMTTALLMNGT---VN 533 (706)
Q Consensus 465 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~P~lsp~~----ik~~L~~TA~~~~~~---~~ 533 (706)
++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++||.+.... ..
T Consensus 261 s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~~~~~ 327 (346)
T cd07475 261 STVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSEDTKT 327 (346)
T ss_pred EecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccCCCCc
Confidence 88763 56889999999999999999999997 79999876 788999999964332 12
Q ss_pred CCCCCCCCCCCCCccccCC
Q 036374 534 RGREFDYGSGHIDPVKATN 552 (706)
Q Consensus 534 ~~~~~~~G~G~id~~~Al~ 552 (706)
...+..+|+|+||+.+||+
T Consensus 328 ~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 328 YYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred cCCccccCcchhcHHHhhC
Confidence 3467788999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-47 Score=418.45 Aligned_cols=400 Identities=22% Similarity=0.215 Sum_probs=243.6
Q ss_pred CCCCCcEEEEEccccCCCCcCCCC-CCCCCCCCCCCCCcccCCcccccCceeEeeeecC--------------CCCCccc
Q 036374 99 TVESDMIIGVLDNGIWPESDMFDD-KSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYS--------------GINTTRE 163 (706)
Q Consensus 99 ~~G~GVvVgVIDtGid~~Hp~f~~-~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~--------------~~~~~~D 163 (706)
.+|+||+|||||||||+.||+|++ ++.+++...|+. ....+..- ....+...+. ......|
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq-~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D 76 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQ-TIPGGPPP---GGYYGGGEYTEEIINAALASDNPYDIVPSRD 76 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhC-cCCCCCCC---ccccCceEEeHHHHHHHHhcCCccccCcCCC
Confidence 479999999999999999999985 456777788876 44332110 0111111110 0122357
Q ss_pred ccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC-----------CCHHHHHHHHHHHHHC--
Q 036374 164 YQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-----------CNEADILAAFDDAIAD-- 230 (706)
Q Consensus 164 ~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-----------~~~~~i~~ai~~ai~~-- 230 (706)
. .||||||||||||+..++ ..+.||||+|+|+++|++. ..+ +...++++||+|+++.
T Consensus 77 ~-~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~-~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~ 146 (455)
T cd07478 77 E-NGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQ-AKKYLREFYEDVPFYQETDIMLAIKYLYDKAL 146 (455)
T ss_pred C-CCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeec-CCCcccccccccccCcHHHHHHHHHHHHHHHH
Confidence 7 999999999999986432 2339999999999999998 433 5788999999999873
Q ss_pred ---CCcEEEEcccCCCCCCChhhHHHHHHHHHHhC-CcEEEEecCCCCCCCCCcccC-----C--CceEEEccccCCcce
Q 036374 231 ---GVDIILTGATYGFAFDFAEDAVAIGAFHAMEK-GILTAVPTGNMGPKPASTVVV-----A--PWILTVAGSSIDRPF 299 (706)
Q Consensus 231 ---gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~~~~~~-----~--p~vitVga~~~~~~~ 299 (706)
.+.|||||||.+.+.+...++++.++..+.++ |++||+||||+|......... . .--+.|+.......+
T Consensus 147 ~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~~~~~~ 226 (455)
T cd07478 147 ELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGEKGFNL 226 (455)
T ss_pred HhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCCcceEE
Confidence 46899999999877788888999998887776 999999999999743322210 0 001233321111000
Q ss_pred eeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCC--CCCcccccccCCCCCCCCcccccEEEEeecccchheeecC
Q 036374 300 IDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASY--PCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVG 377 (706)
Q Consensus 300 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~--~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~G 377 (706)
.......+...+.-.+ +.++..+.+........ ......-..|.... .+...+|.-.+..+ .. -...|
T Consensus 227 eiW~~~~d~~~v~i~s-----P~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~-~~~~~~g~~~i~i~---~~-~~~~G 296 (455)
T cd07478 227 EIWGDFPDRFSVSIIS-----PSGESSGRINPGIGGSESYKFVFEGTTVYVYYY-LPEPYTGDQLIFIR---FK-NIKPG 296 (455)
T ss_pred EEecCCCCEEEEEEEC-----CCCCccCccCcCCCcceeEEEEECCeEEEEEEc-CCCCCCCCeEEEEE---cc-CCCcc
Confidence 0000000100000000 00000000000000000 00000000111100 01111222222211 11 22345
Q ss_pred ceEEEecCC--CCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeee--e--eec--CCCCCcccccCCCCCCCCCC
Q 036374 378 ALGSIQPAS--TIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRS--M--AIK--DDAAPVVHPFSGRGPSKITP 449 (706)
Q Consensus 378 a~g~i~~~~--~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~--~--~~~--~~~~~~~a~fSS~GP~~~~~ 449 (706)
.+-+.++.. ..-....++|...+..++. .++.+....+++++.. . .++ +...+.++.||||||+. +
T Consensus 297 iW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t----~f~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~--~ 370 (455)
T cd07478 297 IWKIRLTGVSITDGRFDAWLPSRGLLSENT----RFLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTR--D 370 (455)
T ss_pred ceEEEEEeccCCCceEEEEecCcCcCCCCC----EeecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCC--C
Confidence 566666551 1223345566544433322 3455566666666221 1 111 23345799999999998 8
Q ss_pred CCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhC------CCCCHHHHHHHHHh
Q 036374 450 DIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFH------PDWSPSSIKSALMT 523 (706)
Q Consensus 450 ~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~------P~lsp~~ik~~L~~ 523 (706)
+++||||+|||++|+++.+. +.|..++|||||||||||++|||+|.+ |.|++++||++|++
T Consensus 371 ~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~ 437 (455)
T cd07478 371 GRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIR 437 (455)
T ss_pred CCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHH
Confidence 99999999999999999883 569999999999999999999999875 56799999999999
Q ss_pred cccccCCCCCCCCCCCCCCC
Q 036374 524 TALLMNGTVNRGREFDYGSG 543 (706)
Q Consensus 524 TA~~~~~~~~~~~~~~~G~G 543 (706)
||+++... +.++.+||||
T Consensus 438 tA~~~~~~--~~pn~~~GyG 455 (455)
T cd07478 438 GARRRPGD--EYPNPEWGYG 455 (455)
T ss_pred hCccCCCC--CCCCCCCCCC
Confidence 99998742 3457889988
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-47 Score=402.40 Aligned_cols=291 Identities=28% Similarity=0.372 Sum_probs=226.3
Q ss_pred CCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCC
Q 036374 89 GFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGH 168 (706)
Q Consensus 89 g~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gH 168 (706)
|++ .+|+.+++|+||+|||||+|||++||+|.+.-.. +.....+++|..+. ...........++.|. .||
T Consensus 1 ~v~-~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~-------~~~~~~~~d~~~~~-~~~~~~~~~~~~~~d~-~gH 70 (312)
T cd07489 1 GVD-KLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP-------GCKVAGGYDFVGDD-YDGTNPPVPDDDPMDC-QGH 70 (312)
T ss_pred Chh-hHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC-------CceeccccccCCcc-cccccCCCCCCCCCCC-CCc
Confidence 456 7999999999999999999999999999753111 10111222321111 0000001113456788 999
Q ss_pred cccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCCh
Q 036374 169 GTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFDFA 248 (706)
Q Consensus 169 GThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~ 248 (706)
||||||||+|...+ .| +.||||+|+|+.+|++.+......+.+++++++|++++++|||||||... .+.
T Consensus 71 GT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~--~~~ 139 (312)
T cd07489 71 GTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS--GWS 139 (312)
T ss_pred HHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC--CCC
Confidence 99999999998642 12 38999999999999998334477888999999999999999999999873 344
Q ss_pred hhHHHHHHHHHHhCCcEEEEecCCCCCCCC---CcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCce
Q 036374 249 EDAVAIGAFHAMEKGILTAVPTGNMGPKPA---STVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNK 325 (706)
Q Consensus 249 ~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 325 (706)
...+...+.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 140 ~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------------------------- 188 (312)
T cd07489 140 EDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------------------------- 188 (312)
T ss_pred CCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-------------------------------
Confidence 477778888899999999999999986532 2344667888887643
Q ss_pred eeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhH
Q 036374 326 FPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDF 405 (706)
Q Consensus 326 ~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~ 405 (706)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccce
Q 036374 406 ERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKY 485 (706)
Q Consensus 406 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y 485 (706)
+.||++||+. +...||||+|||++|+++++.. .+.|
T Consensus 189 -------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~-----------~~~~ 224 (312)
T cd07489 189 -------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLA-----------GGGY 224 (312)
T ss_pred -------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCC-----------CCce
Confidence 3578999998 7899999999999999988753 2358
Q ss_pred eEeccccchhHHHHHHHHHHHhhC-CCCCHHHHHHHHHhcccccCCCCC------CCCCCCCCCCCCCccccCCcCc
Q 036374 486 NILSGTSIASAFAAGAAAYVRSFH-PDWSPSSIKSALMTTALLMNGTVN------RGREFDYGSGHIDPVKATNPGL 555 (706)
Q Consensus 486 ~~~sGTSmAaP~VAG~aALl~~~~-P~lsp~~ik~~L~~TA~~~~~~~~------~~~~~~~G~G~id~~~Al~~~l 555 (706)
..++|||||||+|||++|||++++ |.+++.+||++|++||.++..... ..+...+|||+||+++|++..-
T Consensus 225 ~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 225 AVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred EeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccccCCCCHhhcCcceeeHHHHhcCCc
Confidence 999999999999999999999999 999999999999999998754321 1345789999999999999633
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=388.62 Aligned_cols=247 Identities=24% Similarity=0.236 Sum_probs=202.6
Q ss_pred cccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccce
Q 036374 94 VKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMA 173 (706)
Q Consensus 94 ~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVA 173 (706)
+|..+++|+||+|||||+|||.+||+|.+..+.+....|. ...+..|. .+||||||
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~~~~-----------------------~~~~~~~~-~gHGT~VA 57 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFTYAA-----------------------AACQDGGA-SAHGTHVA 57 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccCccc-----------------------cCCCCCCC-CCcHHHHH
Confidence 7999999999999999999999999997542221100000 01234566 89999999
Q ss_pred eecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC--CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhH
Q 036374 174 SIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP--CNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDA 251 (706)
Q Consensus 174 gi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~ 251 (706)
|||+|+... .+.||||+|+|+.+|++. ..+ ++..++++||++|++.|++|||||||...........
T Consensus 58 gii~g~~~~----------~~~GvAp~a~i~~~~v~~-~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~ 126 (267)
T cd07476 58 SLIFGQPCS----------SVEGIAPLCRGLNIPIFA-EDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPI 126 (267)
T ss_pred HHHhcCCCC----------CceeECcCCeEEEEEEEe-CCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCHH
Confidence 999987421 238999999999999987 432 4578899999999999999999999986433344566
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEec
Q 036374 252 VAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYG 331 (706)
Q Consensus 252 ~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~ 331 (706)
+..++.++.++|+++|+||||+|.....++...+++|+||+++.+
T Consensus 127 l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~----------------------------------- 171 (267)
T cd07476 127 LANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD----------------------------------- 171 (267)
T ss_pred HHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC-----------------------------------
Confidence 788888899999999999999998776777788999999987532
Q ss_pred cCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHH
Q 036374 332 KTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLY 411 (706)
Q Consensus 332 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~ 411 (706)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccc
Q 036374 412 INSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGT 491 (706)
Q Consensus 412 ~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGT 491 (706)
+.++.||++|+.. .||||+|||.+|+++.+. +.|..++||
T Consensus 172 ----------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~-------------~~~~~~sGT 211 (267)
T cd07476 172 ----------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALG-------------GEVVRRSGT 211 (267)
T ss_pred ----------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCC-------------CCeEEeccH
Confidence 2356789999764 388999999999998773 569999999
Q ss_pred cchhHHHHHHHHHHHhhCCC----CCHHHHHHHHHhcccccCC
Q 036374 492 SIASAFAAGAAAYVRSFHPD----WSPSSIKSALMTTALLMNG 530 (706)
Q Consensus 492 SmAaP~VAG~aALl~~~~P~----lsp~~ik~~L~~TA~~~~~ 530 (706)
|||||||||++|||++++|. ++|++||++|++||+++..
T Consensus 212 S~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 212 SFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred HHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 99999999999999999887 9999999999999999865
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-45 Score=387.45 Aligned_cols=287 Identities=33% Similarity=0.460 Sum_probs=213.4
Q ss_pred CCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecC----CCCCcccccCCCcccceeec
Q 036374 101 ESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYS----GINTTREYQLGHGTHMASIA 176 (706)
Q Consensus 101 G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~----~~~~~~D~~~gHGThVAgi~ 176 (706)
|+||+|||||+|||++||+|.+.... .. .+..+++|..+..-....... ......|. .+|||||||+|
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~HGT~vAgii 72 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGFP------ND-KVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDA-TGHGTHVAGII 72 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCCC------CC-ceeeeeECccCCCCcccccccccccccCCCCCC-CCcHHHHHHHH
Confidence 89999999999999999999743211 00 222233331111000000000 01123346 89999999999
Q ss_pred ccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHH
Q 036374 177 AGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGA 256 (706)
Q Consensus 177 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~ 256 (706)
+|...+ ...+.|+||+|+|+.+|++.....+...+++++|+++++.+++|||||||.... ...+.+..++
T Consensus 73 ag~~~n--------~~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~--~~~~~~~~~~ 142 (295)
T cd07474 73 AGNGVN--------VGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVN--GPDDPDAIAI 142 (295)
T ss_pred hcCCCc--------cCceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCC--CCCCHHHHHH
Confidence 988543 223389999999999999973334788899999999999999999999998732 2456778888
Q ss_pred HHHHhCCcEEEEecCCCCCCCCCc--ccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCC
Q 036374 257 FHAMEKGILTAVPTGNMGPKPAST--VVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTN 334 (706)
Q Consensus 257 ~~a~~~Gv~vV~AAGN~G~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~ 334 (706)
.++.++|+++|+||||+|...... +...+++|+||++.....
T Consensus 143 ~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~------------------------------------ 186 (295)
T cd07474 143 NNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV------------------------------------ 186 (295)
T ss_pred HHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc------------------------------------
Confidence 899999999999999998765443 457789999998752110
Q ss_pred CCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhc
Q 036374 335 ASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINS 414 (706)
Q Consensus 335 ~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~ 414 (706)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEeeeeeecCCCCCcccccC-CCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccc
Q 036374 415 TEKPQVHILRSMAIKDDAAPVVHPFS-GRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSI 493 (706)
Q Consensus 415 ~~~~~~~i~~~~~~~~~~~~~~a~fS-S~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSm 493 (706)
........|+ +.|++. ...+||||+|||.+|++++... ...|..++||||
T Consensus 187 ----------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~-----------~~~~~~~~GTS~ 237 (295)
T cd07474 187 ----------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGS-----------GTGYARMSGTSM 237 (295)
T ss_pred ----------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCC-----------CCceEEeccHHH
Confidence 0012233444 455555 7899999999999999988743 256899999999
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCC-CCCCCCCCCCCCcccc
Q 036374 494 ASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNR-GREFDYGSGHIDPVKA 550 (706)
Q Consensus 494 AaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~-~~~~~~G~G~id~~~A 550 (706)
|||+|||++|||+|++|+|++++||++|++||+++...... .....+|+|+||+.+|
T Consensus 238 AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 238 AAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred HHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCCCcCChhccCcceeccccC
Confidence 99999999999999999999999999999999987664322 2457899999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-45 Score=391.53 Aligned_cols=220 Identities=21% Similarity=0.248 Sum_probs=166.4
Q ss_pred cccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC--CCHHHHHHHHHHHHHCCCcEEEEccc
Q 036374 163 EYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP--CNEADILAAFDDAIADGVDIILTGAT 240 (706)
Q Consensus 163 D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~ai~~gv~VIN~SlG 240 (706)
|. .+|||||||||||+..++ ..+.|+||+|+|+.+|+++...+ +...++++|+++|++.|++|||||||
T Consensus 183 d~-~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 183 DS-GAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CC-CCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 44 799999999999985322 22489999999999999873223 34467999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHHH-HHhCCcEEEEecCCCCCCCCCccc---CCCceEEEccccCCcceeeeEEeCCCeEEeeeec
Q 036374 241 YGFAFDFAEDAVAIGAFH-AMEKGILTAVPTGNMGPKPASTVV---VAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAV 316 (706)
Q Consensus 241 ~~~~~~~~~~~~~~a~~~-a~~~Gv~vV~AAGN~G~~~~~~~~---~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~ 316 (706)
.....+.. ..+..++.+ +.++|+++|+||||+|+...++.. ..+++|+|||............+
T Consensus 254 ~~~~~~~~-~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~----------- 321 (412)
T cd04857 254 EATHWPNS-GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAEYSL----------- 321 (412)
T ss_pred cCCCCccc-hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCcccccccc-----------
Confidence 87322211 233334443 446899999999999987665532 46899999997543211000000
Q ss_pred cCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCcc
Q 036374 317 NPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFP 396 (706)
Q Consensus 317 ~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p 396 (706)
T Consensus 322 -------------------------------------------------------------------------------- 321 (412)
T cd04857 322 -------------------------------------------------------------------------------- 321 (412)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCC
Q 036374 397 TVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNH 476 (706)
Q Consensus 397 ~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~ 476 (706)
.....+.++.||||||+. ++.+||||+|||+.|.+.-...
T Consensus 322 --------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~------ 361 (412)
T cd04857 322 --------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT------ 361 (412)
T ss_pred --------------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC------
Confidence 001235689999999998 9999999999999998752211
Q ss_pred CCCCcccceeEeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccc
Q 036374 477 PMDHRFVKYNILSGTSIASAFAAGAAAYVRS----FHPDWSPSSIKSALMTTALLM 528 (706)
Q Consensus 477 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~lsp~~ik~~L~~TA~~~ 528 (706)
...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 362 -----~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 -----LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred -----CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 24689999999999999999999975 579999999999999999874
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=374.95 Aligned_cols=235 Identities=23% Similarity=0.284 Sum_probs=192.4
Q ss_pred cEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeecccccccC
Q 036374 104 MIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVG 183 (706)
Q Consensus 104 VvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~~ 183 (706)
|+|||||||||.+||+|.+.-+. ... +. ...+.|. .+|||||||||+|....
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~~-------------~~~------------~~-~~~~~~~-~~HGT~vAgiia~~~~~- 52 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVIA-------------RLF------------FA-GPGAPAP-SAHGTAVASLLAGAGAQ- 52 (239)
T ss_pred CEEEEEeCCCCCCCcccccCccc-------------ccc------------CC-CCCCCCC-CCCHHHHHHHHhCCCCC-
Confidence 78999999999999999643111 111 10 1134456 89999999999987421
Q ss_pred CCcccCCCcceeeccCCCeEEEEEeecCC---CCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHHHHH
Q 036374 184 ASFDGLAKGNVRGAVPSARIAAYRVCHYP---WPCNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAM 260 (706)
Q Consensus 184 ~~~~G~~~g~~~GvAP~A~l~~~kv~~~~---~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~ 260 (706)
. .|+||+|+|+.+|++... ..++..++++||+||++.|++|||||||.. ....+..++.++.
T Consensus 53 ---------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~-----~~~~l~~ai~~a~ 117 (239)
T cd05561 53 ---------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGP-----PNALLAAAVAAAA 117 (239)
T ss_pred ---------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC-----CCHHHHHHHHHHH
Confidence 1 799999999999999832 126788999999999999999999999976 1346777888899
Q ss_pred hCCcEEEEecCCCCCCC-CCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCC
Q 036374 261 EKGILTAVPTGNMGPKP-ASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPC 339 (706)
Q Consensus 261 ~~Gv~vV~AAGN~G~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~ 339 (706)
++|+++|+||||+|... ..++...+++|+||+++.+
T Consensus 118 ~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~------------------------------------------- 154 (239)
T cd05561 118 ARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR------------------------------------------- 154 (239)
T ss_pred HCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC-------------------------------------------
Confidence 99999999999998753 3456677899999986532
Q ss_pred CcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcE
Q 036374 340 SELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQ 419 (706)
Q Consensus 340 ~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~ 419 (706)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHH
Q 036374 420 VHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAA 499 (706)
Q Consensus 420 ~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 499 (706)
+.++.||++|+.. ||.|||.+|+++.+ .+.|..++||||||||||
T Consensus 155 --------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~-------------~~~~~~~sGTS~AaP~va 199 (239)
T cd05561 155 --------------GRLYREANRGAHV--------DFAAPGVDVWVAAP-------------GGGYRYVSGTSFAAPFVT 199 (239)
T ss_pred --------------CCccccCCCCCcc--------eEEccccceecccC-------------CCCEEEeCCHHHHHHHHH
Confidence 3467899999976 99999999998765 356999999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCC
Q 036374 500 GAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSG 543 (706)
Q Consensus 500 G~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G 543 (706)
|++|||+|++| ++++|||++|++||+++.. +..+..||||
T Consensus 200 G~aAll~~~~p-~~~~~i~~~L~~ta~~~g~---~~~d~~~G~G 239 (239)
T cd05561 200 AALALLLQASP-LAPDDARARLAATAKDLGP---PGRDPVFGYG 239 (239)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHhhccCC---CCcCCCcCCC
Confidence 99999999999 9999999999999998765 5677899998
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=385.63 Aligned_cols=258 Identities=26% Similarity=0.338 Sum_probs=189.5
Q ss_pred CCcEEEEEccccCCCCcCCCCCCC---CCCC-----CCCCCCcc--cCCcccc---cCceeEeeeecCC---------CC
Q 036374 102 SDMIIGVLDNGIWPESDMFDDKSF---GPPP-----KKWKGGAC--KGGQNFT---CNNKIIGARYYSG---------IN 159 (706)
Q Consensus 102 ~GVvVgVIDtGid~~Hp~f~~~~~---~~~~-----~~~~g~~~--~~g~~f~---~n~k~ig~~~~~~---------~~ 159 (706)
|+|+|||||||||++||+|++.-. .+++ ...+| .+ ..|++|. ..+++++...+.. ..
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng-~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 79 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNG-YIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDVN 79 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCC-ccccccCeeccCCcccccccccCccccccccccccccC
Confidence 689999999999999999985311 1111 01122 11 2345552 1223333222210 12
Q ss_pred CcccccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcc
Q 036374 160 TTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGA 239 (706)
Q Consensus 160 ~~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~Sl 239 (706)
.|.|. .+|||||||||+|...++. | +.||||+|+|+.+|++. .......++++||+||++.|++||||||
T Consensus 80 ~~~~~-~gHGT~VAGiIaa~~~n~~---g-----~~GvAp~a~i~~~k~~~-~g~~~~~~i~~Ai~~a~~~g~~IiN~S~ 149 (291)
T cd07483 80 GPISD-ADHGTHVAGIIAAVRDNGI---G-----IDGVADNVKIMPLRIVP-NGDERDKDIANAIRYAVDNGAKVINMSF 149 (291)
T ss_pred CCCCC-CCcHHHHHHHHhCcCCCCC---c-----eEEECCCCEEEEEEEec-CCCcCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 34456 8999999999999854322 2 38999999999999987 5556788999999999999999999999
Q ss_pred cCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCc-----------ccCCCceEEEccccCCcceeeeEEeCCC
Q 036374 240 TYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPAST-----------VVVAPWILTVAGSSIDRPFIDKAILGDG 308 (706)
Q Consensus 240 G~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~-----------~~~~p~vitVga~~~~~~~~~~~~~~~~ 308 (706)
|.... .....+..++..+.++|+++|+||||+|...... +...+++|+||+.+...
T Consensus 150 G~~~~--~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~----------- 216 (291)
T cd07483 150 GKSFS--PNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY----------- 216 (291)
T ss_pred CCCCC--CccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC-----------
Confidence 97622 2234567777888999999999999998643211 11235677777654321
Q ss_pred eEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCC
Q 036374 309 TTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTI 388 (706)
Q Consensus 309 ~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~ 388 (706)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEeccc
Q 036374 389 MSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYT 468 (706)
Q Consensus 389 ~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~ 468 (706)
....++.||++|+. +|||.|||.+|+++.+
T Consensus 217 -------------------------------------------~~~~~~~~Sn~G~~-------~vdi~APG~~i~s~~~ 246 (291)
T cd07483 217 -------------------------------------------ENNLVANFSNYGKK-------NVDVFAPGERIYSTTP 246 (291)
T ss_pred -------------------------------------------CcccccccCCCCCC-------ceEEEeCCCCeEeccC
Confidence 11247889999974 3599999999999876
Q ss_pred CCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 036374 469 GGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 469 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 526 (706)
.+.|..++|||||||||||++|||+|++|+|++.|||++|++||+
T Consensus 247 -------------~~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 247 -------------DNEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred -------------cCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 356999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-44 Score=371.94 Aligned_cols=242 Identities=27% Similarity=0.300 Sum_probs=192.2
Q ss_pred CcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecC-CCCCc-ccccCCCcccceeeccccc
Q 036374 103 DMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYS-GINTT-REYQLGHGTHMASIAAGNL 180 (706)
Q Consensus 103 GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~-~~~~~-~D~~~gHGThVAgi~ag~~ 180 (706)
||+|||||||||++||+|..... ..+.++.+.++|. ...++ .|. .+|||||||||+|+.
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~------------------~~~~~i~~~~~~~~~~~~~~~~~-~~HGT~vagiia~~~ 61 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHL------------------FKNLRILGEYDFVDNSNNTNYTD-DDHGTAVLSTMAGYT 61 (261)
T ss_pred CCEEEEEccCCCccCcchhhhcc------------------ccCCceeeeecCccCCCCCCCCC-CCchhhhheeeeeCC
Confidence 79999999999999999952110 0122344444442 12233 566 899999999999974
Q ss_pred ccCCCcccCCCcceeeccCCCeEEEEEeecCCCC---CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCC----------
Q 036374 181 VVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP---CNEADILAAFDDAIADGVDIILTGATYGFAFDF---------- 247 (706)
Q Consensus 181 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g---~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~---------- 247 (706)
. +.+.||||+|+|+.+|+.. ... .....+++++++|.+.|++|||||||.......
T Consensus 62 ~----------~~~~GvAp~a~l~~~~~~~-~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~ 130 (261)
T cd07493 62 P----------GVMVGTAPNASYYLARTED-VASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMD 130 (261)
T ss_pred C----------CCEEEeCCCCEEEEEEecc-cCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccccccc
Confidence 2 2348999999999999876 322 345678999999999999999999998632111
Q ss_pred -hhhHHHHHHHHHHhCCcEEEEecCCCCCCC---CCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCC
Q 036374 248 -AEDAVAIGAFHAMEKGILTAVPTGNMGPKP---ASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKG 323 (706)
Q Consensus 248 -~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~---~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 323 (706)
....+..++..+.++|+++|+||||+|... ...+...+++|+|||.+.+
T Consensus 131 ~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~--------------------------- 183 (261)
T cd07493 131 GKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN--------------------------- 183 (261)
T ss_pred ccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC---------------------------
Confidence 123567788888999999999999999763 4456678999999986532
Q ss_pred ceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechh
Q 036374 324 NKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKME 403 (706)
Q Consensus 324 ~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~ 403 (706)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCccc
Q 036374 404 DFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFV 483 (706)
Q Consensus 404 ~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~ 483 (706)
+.++.||++||+. ++++||||+|||.+|++... .+
T Consensus 184 ------------------------------~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~-------------~~ 218 (261)
T cd07493 184 ------------------------------GNKASFSSIGPTA--DGRLKPDVMALGTGIYVING-------------DG 218 (261)
T ss_pred ------------------------------CCCCccCCcCCCC--CCCcCCceEecCCCeEEEcC-------------CC
Confidence 3467899999998 89999999999999997543 35
Q ss_pred ceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 036374 484 KYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 484 ~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 526 (706)
.|..++|||||||+|||++|||++++|+|++.|||++|++||+
T Consensus 219 ~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 219 NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 6899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-44 Score=370.11 Aligned_cols=247 Identities=28% Similarity=0.302 Sum_probs=194.6
Q ss_pred CCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeeccccc
Q 036374 101 ESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNL 180 (706)
Q Consensus 101 G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~ 180 (706)
|+||+|||||+|||++||+|.+. +.. .+.+ .....+++.+ .......|.|. .+|||||||||+|..
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~-~~~---~~~~-~~~~~~~~~d--------~~~~~~~~~d~-~~HGT~vagii~g~~ 66 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK-YRG---WGGG-SADHDYNWFD--------PVGNTPLPYDD-NGHGTHTMGTMVGND 66 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc-ccc---cCCC-Cccccccccc--------CCCCCCCCCCC-CCchhhhhhheeecC
Confidence 89999999999999999999763 110 0011 1111111100 00013456777 899999999999874
Q ss_pred ccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHH------------CCCcEEEEcccCCCCCCCh
Q 036374 181 VVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIA------------DGVDIILTGATYGFAFDFA 248 (706)
Q Consensus 181 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~------------~gv~VIN~SlG~~~~~~~~ 248 (706)
.. +...||||+|+|+.+|++. ...+...+++++++++++ .+++|||||||.... .
T Consensus 67 ~~---------~~~~GvAp~a~i~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~---~ 133 (264)
T cd07481 67 GD---------GQQIGVAPGARWIACRALD-RNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG---D 133 (264)
T ss_pred CC---------CCceEECCCCeEEEEEeec-CCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC---C
Confidence 32 1128999999999999998 666888899999999975 789999999998732 2
Q ss_pred hhHHHHHHHHHHhCCcEEEEecCCCCCCCCC---cccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCce
Q 036374 249 EDAVAIGAFHAMEKGILTAVPTGNMGPKPAS---TVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNK 325 (706)
Q Consensus 249 ~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 325 (706)
...+..++..+.++|++||+||||+|..... .+...+++|+||+.+.+
T Consensus 134 ~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~----------------------------- 184 (264)
T cd07481 134 NEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN----------------------------- 184 (264)
T ss_pred chHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC-----------------------------
Confidence 3455566677888999999999999865432 45677899999986533
Q ss_pred eeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhH
Q 036374 326 FPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDF 405 (706)
Q Consensus 326 ~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~ 405 (706)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccce
Q 036374 406 ERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKY 485 (706)
Q Consensus 406 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y 485 (706)
+.++.||++||.. .+++||||+|||.+|+++.+. +.|
T Consensus 185 ----------------------------~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~-------------~~~ 221 (264)
T cd07481 185 ----------------------------DVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG-------------GGY 221 (264)
T ss_pred ----------------------------CCCccccCCCCCC--CCCcCceEEECCCCeEEecCC-------------Cce
Confidence 3578899999998 799999999999999998873 468
Q ss_pred eEeccccchhHHHHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 036374 486 NILSGTSIASAFAAGAAAYVRSFHPD--WSPSSIKSALMTTAL 526 (706)
Q Consensus 486 ~~~sGTSmAaP~VAG~aALl~~~~P~--lsp~~ik~~L~~TA~ 526 (706)
..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 222 ~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 222 GSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred EeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 89999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=369.94 Aligned_cols=264 Identities=25% Similarity=0.254 Sum_probs=200.2
Q ss_pred ccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccc
Q 036374 93 TVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHM 172 (706)
Q Consensus 93 ~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThV 172 (706)
.+|..+++|+||+|||||||||++||+|.+..... .++ .+...+.+..+. + .......|. .||||||
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~---~~~--~~~~~~~~~~~~---~----~~~~~~~~~-~gHGT~V 67 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD---GYD--PAVNGYNFVPNV---G----DIDNDVSVG-GGHGTHV 67 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC---Ccc--cccCCccccccc---C----CcCCCCCCC-CCCHHHH
Confidence 48999999999999999999999999998651110 000 000111110000 0 001233466 8999999
Q ss_pred eeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHH
Q 036374 173 ASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAV 252 (706)
Q Consensus 173 Agi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~ 252 (706)
||||+|+..+.....|.+ .+.|+||+|+|+.+|++.....+....++++|++|++.|++|||||||... ...+...+
T Consensus 68 Agiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~-~~~~~~~~ 144 (273)
T cd07485 68 AGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTG-GGIYSPLL 144 (273)
T ss_pred HHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCC-ccccCHHH
Confidence 999999764332222221 236799999999999998333477888999999999999999999999873 22344567
Q ss_pred HHHHHHHHhC-------CcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCce
Q 036374 253 AIGAFHAMEK-------GILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNK 325 (706)
Q Consensus 253 ~~a~~~a~~~-------Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 325 (706)
..++..+.++ |+++|+||||+|......+...+++|+||+++.+
T Consensus 145 ~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~----------------------------- 195 (273)
T cd07485 145 KDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN----------------------------- 195 (273)
T ss_pred HHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC-----------------------------
Confidence 7777788887 9999999999998766667788999999986533
Q ss_pred eeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhH
Q 036374 326 FPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDF 405 (706)
Q Consensus 326 ~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~ 405 (706)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCC-cEEecccCCCCCCCCCCCCcccc
Q 036374 406 ERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAV-QILAAYTGGWGPSNHPMDHRFVK 484 (706)
Q Consensus 406 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~-~I~sa~~~~~~~~~~~~~~~~~~ 484 (706)
+.++.||++|+.. ||+|||. .|+++.+.... .....
T Consensus 196 ----------------------------~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~-------~~~~~ 232 (273)
T cd07485 196 ----------------------------DNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG-------DGGGN 232 (273)
T ss_pred ----------------------------CCcCccccCCCce--------EEEeCCCCccccccccccC-------CCCCC
Confidence 3467899999977 9999999 88887764311 11356
Q ss_pred eeEeccccchhHHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 036374 485 YNILSGTSIASAFAAGAAAYVRSFHPD-WSPSSIKSALMTT 524 (706)
Q Consensus 485 y~~~sGTSmAaP~VAG~aALl~~~~P~-lsp~~ik~~L~~T 524 (706)
|..++|||||||+|||++|||+|++|. |+|+|||++|++|
T Consensus 233 ~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 233 YEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred eEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=366.51 Aligned_cols=258 Identities=28% Similarity=0.400 Sum_probs=204.8
Q ss_pred CCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeeccccc
Q 036374 101 ESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNL 180 (706)
Q Consensus 101 G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~ 180 (706)
|+||+|+|||+|||++||+|.+.... .+ .+... ........|. .+|||||||||+|..
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~----~~---------~~~~~--------~~~~~~~~d~-~~HGT~vAgiiag~~ 58 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR----FA---------DFVNT--------VNGRTTPYDD-NGHGTHVAGIIAGSG 58 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc----cc---------ccccc--------ccCCCCCCCC-CCchHHHHHHHhcCC
Confidence 89999999999999999999753211 00 11000 0012345677 899999999999985
Q ss_pred ccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHC----CCcEEEEcccCCCCCCChhhHHHHHH
Q 036374 181 VVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIAD----GVDIILTGATYGFAFDFAEDAVAIGA 256 (706)
Q Consensus 181 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~----gv~VIN~SlG~~~~~~~~~~~~~~a~ 256 (706)
... .+.+.|+||+|+|+.+|+++........++++|++++++. +++|||||||...........+..++
T Consensus 59 ~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~~~~~~ 131 (264)
T cd07487 59 RAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAV 131 (264)
T ss_pred ccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCHHHHHH
Confidence 421 2234999999999999999833337788999999999998 99999999999844455677888899
Q ss_pred HHHHhCCcEEEEecCCCCCCCC--CcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCC
Q 036374 257 FHAMEKGILTAVPTGNMGPKPA--STVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTN 334 (706)
Q Consensus 257 ~~a~~~Gv~vV~AAGN~G~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~ 334 (706)
.++.++|+++|+||||++.... ..+...+++|+||+.+.+..
T Consensus 132 ~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------------------------ 175 (264)
T cd07487 132 ERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------------------------------ 175 (264)
T ss_pred HHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC------------------------------------
Confidence 9999999999999999998765 44567899999999765420
Q ss_pred CCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhc
Q 036374 335 ASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINS 414 (706)
Q Consensus 335 ~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~ 414 (706)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccch
Q 036374 415 TEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIA 494 (706)
Q Consensus 415 ~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 494 (706)
....++.||++||+. ++++||||+|||.+|++..+..... .....+.|..++|||||
T Consensus 176 -----------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~----~~~~~~~~~~~~GTS~A 232 (264)
T cd07487 176 -----------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNP----GAGVGSGYFEMSGTSMA 232 (264)
T ss_pred -----------------CCccccccccCCCCC--CCCcCCCEEccccceEecccccccc----CCCCCCceEeccccchH
Confidence 012378899999998 8999999999999999986543110 11224678999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 036374 495 SAFAAGAAAYVRSFHPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 495 aP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 526 (706)
||+|||++|||+|++|.|++.+||++|++||+
T Consensus 233 ap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 233 TPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred HHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 99999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=363.13 Aligned_cols=257 Identities=21% Similarity=0.270 Sum_probs=189.0
Q ss_pred cccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCccccc
Q 036374 86 DFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQ 165 (706)
Q Consensus 86 ~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~ 165 (706)
+.++++ .+|+.+.+|+||+|||||||||..|| |...++ .+ ..... . .......|.
T Consensus 6 ~~l~~~-~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~-~~~~~----~----------~~~~~~~D~- 60 (298)
T cd07494 6 ALLNAT-RVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QV-RVVLA----P----------GATDPACDE- 60 (298)
T ss_pred hhcChh-HHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------cc-eeecC----C----------CCCCCCCCC-
Confidence 467788 99999999999999999999999998 754321 11 10000 0 001234566
Q ss_pred CCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 036374 166 LGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAF 245 (706)
Q Consensus 166 ~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~ 245 (706)
.|||||||+++ .||||+|+|+.+|+++ . ..+++++||+||++.+++|||||||.....
T Consensus 61 ~gHGT~vag~i------------------~GvAP~a~i~~vkv~~-~---~~~~~~~ai~~a~~~g~dVIn~SlG~~~~~ 118 (298)
T cd07494 61 NGHGTGESANL------------------FAIAPGAQFIGVKLGG-P---DLVNSVGAFKKAISLSPDIISNSWGYDLRS 118 (298)
T ss_pred CCcchheeece------------------eEeCCCCeEEEEEccC-C---CcHHHHHHHHHHHhcCCCEEEeecccCCCC
Confidence 89999999876 7899999999999988 2 567899999999999999999999986321
Q ss_pred C---------ChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeec
Q 036374 246 D---------FAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAV 316 (706)
Q Consensus 246 ~---------~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~ 316 (706)
. .....+..++.+|.++|++||+||||++. .+++..|++|+||+++.+.. +..
T Consensus 119 ~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g~~------ 180 (298)
T cd07494 119 PGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------GAR------ 180 (298)
T ss_pred cccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------Ccc------
Confidence 1 12345777888899999999999999974 46888999999999864420 000
Q ss_pred cCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCcc
Q 036374 317 NPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFP 396 (706)
Q Consensus 317 ~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p 396 (706)
T Consensus 181 -------------------------------------------------------------------------------- 180 (298)
T cd07494 181 -------------------------------------------------------------------------------- 180 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCce----------------EecC
Q 036374 397 TVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDI----------------SAPA 460 (706)
Q Consensus 397 ~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi----------------~APG 460 (706)
......+.|+|. . .+++.|||+ +|||
T Consensus 181 ----------------------------------~~~~~~~~~~s~--~--~~g~~~pd~~~~~g~~~~~~~~~~~~APG 222 (298)
T cd07494 181 ----------------------------------RASSYASGFRSK--I--YPGRQVPDVCGLVGMLPHAAYLMLPVPPG 222 (298)
T ss_pred ----------------------------------cccccccCcccc--c--CCCCccCccccccCcCCcccccccccCCC
Confidence 000001112211 1 256677777 4799
Q ss_pred CcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCC
Q 036374 461 VQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNG 530 (706)
Q Consensus 461 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~ 530 (706)
..|.++..... . .......|..++|||||||||||++|||+|++|.|+++|||++|++||+++..
T Consensus 223 ~~i~~~~~~~~-~----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 223 SQLDRSCAAFP-D----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred cceeccccCCC-C----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 99876553210 0 01113569999999999999999999999999999999999999999998766
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=359.63 Aligned_cols=249 Identities=29% Similarity=0.325 Sum_probs=205.3
Q ss_pred CCccccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcc
Q 036374 83 RSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTR 162 (706)
Q Consensus 83 ~s~~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~ 162 (706)
+.++.++.+ .+|..+ +|+||+|||||+|||++||+|.... ...+.++. .+..++.
T Consensus 11 w~~~~~~~~-~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~~------------~~~~~~~~-----------~~~~~~~ 65 (260)
T cd07484 11 WNLDQIGAP-KAWDIT-GGSGVTVAVVDTGVDPTHPDLLKVK------------FVLGYDFV-----------DNDSDAM 65 (260)
T ss_pred CCccccChH-HHHhhc-CCCCCEEEEEeCCCCCCCcccccCC------------cccceecc-----------CCCCCCC
Confidence 345567888 899988 9999999999999999999984321 11111221 1123466
Q ss_pred cccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCC
Q 036374 163 EYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYG 242 (706)
Q Consensus 163 D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~ 242 (706)
|. .+|||||||||++....+. .+.|+||+|+|+.+|+++....+...+++++|+++++.+++|||||||..
T Consensus 66 d~-~~HGT~vagii~~~~~~~~--------~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~ 136 (260)
T cd07484 66 DD-NGHGTHVAGIIAAATNNGT--------GVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGG 136 (260)
T ss_pred CC-CCcHHHHHHHHhCccCCCC--------ceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCC
Confidence 77 8999999999998753322 23899999999999999833347888999999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCC
Q 036374 243 FAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMK 322 (706)
Q Consensus 243 ~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 322 (706)
. ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.+
T Consensus 137 ~----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~-------------------------- 186 (260)
T cd07484 137 L----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD-------------------------- 186 (260)
T ss_pred C----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC--------------------------
Confidence 3 3456777777888999999999999998877888889999999986533
Q ss_pred CceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEech
Q 036374 323 GNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKM 402 (706)
Q Consensus 323 ~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~ 402 (706)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcc
Q 036374 403 EDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRF 482 (706)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~ 482 (706)
+..+.||++|+.. |+.|||.+|++..+.
T Consensus 187 -------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~------------- 214 (260)
T cd07484 187 -------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPD------------- 214 (260)
T ss_pred -------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCC-------------
Confidence 3467889999876 999999999988763
Q ss_pred cceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 036374 483 VKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLM 528 (706)
Q Consensus 483 ~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~ 528 (706)
+.|..++|||||||+|||++||+++++| |++++||++|++||+++
T Consensus 215 ~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 215 GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 4689999999999999999999999999 99999999999999876
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-43 Score=368.62 Aligned_cols=264 Identities=23% Similarity=0.219 Sum_probs=186.6
Q ss_pred cEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeecccccccC
Q 036374 104 MIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVG 183 (706)
Q Consensus 104 VvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~~ 183 (706)
.+|||||||||.+||+|... ...+..+ +.. ...+.|. .||||||||||++....
T Consensus 1 p~VaviDtGi~~~hp~l~~~-------------~~~~~~~-~~~----------~~~~~d~-~gHGT~vAgiia~~~~~- 54 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPA-------------LAEDDLD-SDE----------PGWTADD-LGHGTAVAGLALYGDLT- 54 (291)
T ss_pred CEEEEecCCCCCCChhhhhh-------------hcccccc-ccC----------CCCcCCC-CCChHHHHHHHHcCccc-
Confidence 37999999999999999642 1111111 000 0114577 99999999999976432
Q ss_pred CCcccCCCcceeeccCCCeEEEEEeecCCCC-----CCHHHHHHHHHHHHHCC---CcEEEEcccCCCCCCCh-hhHHHH
Q 036374 184 ASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-----CNEADILAAFDDAIADG---VDIILTGATYGFAFDFA-EDAVAI 254 (706)
Q Consensus 184 ~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-----~~~~~i~~ai~~ai~~g---v~VIN~SlG~~~~~~~~-~~~~~~ 254 (706)
.....|+||+|+|+.+|++. ..+ ....++++||+++++.+ ++|||||||........ ...+..
T Consensus 55 -------~~~~~gvap~~~l~~~kv~~-~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~~~~~ 126 (291)
T cd04847 55 -------LPGNGLPRPGCRLESVRVLP-PNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPSSWAA 126 (291)
T ss_pred -------CCCCCCcccceEEEEEEEcC-CCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCCcHHH
Confidence 11238999999999999999 432 56778999999999853 49999999997332211 124444
Q ss_pred HHHH-HHhCCcEEEEecCCCCCCCCC------------cccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCC
Q 036374 255 GAFH-AMEKGILTAVPTGNMGPKPAS------------TVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTM 321 (706)
Q Consensus 255 a~~~-a~~~Gv~vV~AAGN~G~~~~~------------~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 321 (706)
++++ +.++|++||+||||+|..... .+..++++|+|||.+.+.........
T Consensus 127 ~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~---------------- 190 (291)
T cd04847 127 ALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARY---------------- 190 (291)
T ss_pred HHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcccc----------------
Confidence 5543 568999999999999976543 23457899999998765311000000
Q ss_pred CCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEec
Q 036374 322 KGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILK 401 (706)
Q Consensus 322 ~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~ 401 (706)
T Consensus 191 -------------------------------------------------------------------------------- 190 (291)
T cd04847 191 -------------------------------------------------------------------------------- 190 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCC-----CCC
Q 036374 402 MEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGP-----SNH 476 (706)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~-----~~~ 476 (706)
+.......+.||||||.. ++.+||||+|||++|.+........ ...
T Consensus 191 ---------------------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~ 241 (291)
T cd04847 191 ---------------------------SAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTT 241 (291)
T ss_pred ---------------------------cccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcceeeec
Confidence 000011233499999998 9999999999999998865421100 000
Q ss_pred CCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 036374 477 PMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 477 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 526 (706)
........|..++|||||||+|||+||||++++|+++|++||++|++||+
T Consensus 242 ~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 242 LSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred ccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 01122467999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=355.04 Aligned_cols=233 Identities=29% Similarity=0.380 Sum_probs=193.6
Q ss_pred cccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccce
Q 036374 94 VKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMA 173 (706)
Q Consensus 94 ~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVA 173 (706)
.|..+++|+||+|||||+||+++||+|.+. ...+++|. ...+..|. .+||||||
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~-------------~~~~~~~~------------~~~~~~d~-~~HGT~vA 70 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR-------------AIWGADFV------------GGDPDSDC-NGHGTHVA 70 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC-------------eeeeeecC------------CCCCCCCC-CccHHHHH
Confidence 667789999999999999999999999742 11112221 11224566 89999999
Q ss_pred eecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHC-----CCcEEEEcccCCCCCCCh
Q 036374 174 SIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIAD-----GVDIILTGATYGFAFDFA 248 (706)
Q Consensus 174 gi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~-----gv~VIN~SlG~~~~~~~~ 248 (706)
|||++.. .||||+|+|+.+|+++.......++++++++++++. +++|||||||...
T Consensus 71 giia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~----- 131 (255)
T cd04077 71 GTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA----- 131 (255)
T ss_pred HHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC-----
Confidence 9999863 799999999999999833347788999999999986 4899999999872
Q ss_pred hhHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceee
Q 036374 249 EDAVAIGAFHAMEKGILTAVPTGNMGPKP-ASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFP 327 (706)
Q Consensus 249 ~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 327 (706)
...+..++.++.++|+++|+||||+|... ...+...+++|+||+.+.+
T Consensus 132 ~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~------------------------------- 180 (255)
T cd04077 132 STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD------------------------------- 180 (255)
T ss_pred CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC-------------------------------
Confidence 45677788889999999999999999765 3446678999999987643
Q ss_pred eEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHH
Q 036374 328 LSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFER 407 (706)
Q Consensus 328 lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~ 407 (706)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeE
Q 036374 408 VKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNI 487 (706)
Q Consensus 408 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~ 487 (706)
+.++.||++||.. ||+|||.+|+++.... ...|..
T Consensus 181 --------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~-----------~~~~~~ 215 (255)
T cd04077 181 --------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIGS-----------DTATAT 215 (255)
T ss_pred --------------------------CCccCcccCCCCC--------cEEeCCCCeEecccCC-----------CCcEEe
Confidence 2367899999987 9999999999887642 356899
Q ss_pred eccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 036374 488 LSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALL 527 (706)
Q Consensus 488 ~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~ 527 (706)
++|||||||+|||++|||++++|++++++||++|++||++
T Consensus 216 ~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 216 LSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred eCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999975
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=359.50 Aligned_cols=277 Identities=28% Similarity=0.318 Sum_probs=200.9
Q ss_pred CCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeec
Q 036374 97 EPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIA 176 (706)
Q Consensus 97 ~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ 176 (706)
.+++|+||+|||||+|||++||+|.+... .+..+ .++++.....+. ..+.|. .+|||||||||
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~-------------~~~~~-~~~~~~~~~~~~--~~~~d~-~~HGT~vAgii 64 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF-------------NKTNL-FHRKIVRYDSLS--DTKDDV-DGHGTHVAGII 64 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc-------------CcCcc-CcccEEEeeccC--CCCCCC-CCCcchhheee
Confidence 57899999999999999999999975321 01111 233444433332 222366 89999999999
Q ss_pred ccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC--CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHH
Q 036374 177 AGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP--CNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAI 254 (706)
Q Consensus 177 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~ 254 (706)
+|........ ..+.|+||+|+|+.+|++. ..+ ....++.++++++.+.+++|||||||..... .......
T Consensus 65 a~~~~~~~~~-----~~~~GvAp~a~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~--~~~~~~~ 136 (293)
T cd04842 65 AGKGNDSSSI-----SLYKGVAPKAKLYFQDIGD-TSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNN--GYTLLAR 136 (293)
T ss_pred ccCCcCCCcc-----cccccccccCeEEEEEeec-cCccccCCccHHHHHHHHHHhCCEEEeccCCCCCcc--ccchHHH
Confidence 9986443211 1349999999999999998 443 5667788999999999999999999998321 1123333
Q ss_pred HHHHHH-h-CCcEEEEecCCCCCCCC---CcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeE
Q 036374 255 GAFHAM-E-KGILTAVPTGNMGPKPA---STVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLS 329 (706)
Q Consensus 255 a~~~a~-~-~Gv~vV~AAGN~G~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv 329 (706)
++.++. + +|+++|+||||+|.... ..+...+++|+|||++.+.....
T Consensus 137 ~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~---------------------------- 188 (293)
T cd04842 137 AYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG---------------------------- 188 (293)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc----------------------------
Confidence 343333 3 79999999999997654 55668899999999876531000
Q ss_pred eccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHH
Q 036374 330 YGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVK 409 (706)
Q Consensus 330 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~ 409 (706)
..|..
T Consensus 189 ---------------~~~~~------------------------------------------------------------ 193 (293)
T cd04842 189 ---------------EGGLG------------------------------------------------------------ 193 (293)
T ss_pred ---------------ccccc------------------------------------------------------------
Confidence 00000
Q ss_pred HHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEec
Q 036374 410 LYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILS 489 (706)
Q Consensus 410 ~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 489 (706)
.......++.||++||+. ++++||||+|||++|+++..... .........|..++
T Consensus 194 -------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~----~~~~~~~~~~~~~~ 248 (293)
T cd04842 194 -------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGG----GIGDTSDSAYTSKS 248 (293)
T ss_pred -------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCCC----CCCCCChhheeecC
Confidence 001235689999999998 89999999999999999875420 00111245789999
Q ss_pred cccchhHHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 036374 490 GTSIASAFAAGAAAYVRSFH-----P---DWSPSSIKSALMTTAL 526 (706)
Q Consensus 490 GTSmAaP~VAG~aALl~~~~-----P---~lsp~~ik~~L~~TA~ 526 (706)
|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 249 GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 249 GTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99999999999999999985 4 6677899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=353.54 Aligned_cols=253 Identities=26% Similarity=0.301 Sum_probs=187.5
Q ss_pred CcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeeccccccc
Q 036374 103 DMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVV 182 (706)
Q Consensus 103 GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~ 182 (706)
||+|||||+|||++||+|.+.- ....+|..++ .. ....+.|. .+|||||||||+|+..
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~-------------~~~~~~~~~~------~~-~~~~~~d~-~~HGT~vAgiia~~~~- 58 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV-------------AQWADFDENR------RI-SATEVFDA-GGHGTHVSGTIGGGGA- 58 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc-------------CCceeccCCC------CC-CCCCCCCC-CCcHHHHHHHHhcCCC-
Confidence 7999999999999999997531 1111111110 00 02334566 8999999999999853
Q ss_pred CCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHHHHHh-
Q 036374 183 GASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAME- 261 (706)
Q Consensus 183 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~- 261 (706)
.+...|+||+|+|+.+|++. ..++..++++++|+++++.+++|||||||..... .+++..+++.+.+
T Consensus 59 --------~~~~~GvAp~a~i~~~~v~~-~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~---~~~~~~~~~~~~~~ 126 (254)
T cd07490 59 --------KGVYIGVAPEADLLHGKVLD-DGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS---EDPLEEAVEALSNQ 126 (254)
T ss_pred --------CCCEEEECCCCEEEEEEEec-CCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---CcHHHHHHHHHHHc
Confidence 22348999999999999998 5558889999999999999999999999987322 4566665555554
Q ss_pred CCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCc
Q 036374 262 KGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSE 341 (706)
Q Consensus 262 ~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~ 341 (706)
+|++||+||||+|......+...+++|+|||++.+.........
T Consensus 127 ~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~------------------------------------ 170 (254)
T cd07490 127 TGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF------------------------------------ 170 (254)
T ss_pred CCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC------------------------------------
Confidence 69999999999998766777788999999998754210000000
Q ss_pred ccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEE
Q 036374 342 LASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVH 421 (706)
Q Consensus 342 ~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~ 421 (706)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHH
Q 036374 422 ILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGA 501 (706)
Q Consensus 422 i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 501 (706)
........+.+|.. .....|||++|||.+|+++.... ...+.|..++|||||||+|||+
T Consensus 171 -----------g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS~AaP~vaG~ 229 (254)
T cd07490 171 -----------GSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTSMAAPHVAGV 229 (254)
T ss_pred -----------cccccccccCCCCC-ccCCcCceEEeccCCeEccccCC---------CCCCCeeecccHHHHHHHHHHH
Confidence 00012223334433 25678999999999999865321 1146699999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhccc
Q 036374 502 AAYVRSFHPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 502 aALl~~~~P~lsp~~ik~~L~~TA~ 526 (706)
+|||++++|+|++++||++|++||+
T Consensus 230 aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 230 AALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=356.42 Aligned_cols=251 Identities=24% Similarity=0.290 Sum_probs=188.9
Q ss_pred CcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCce-----------eEee-eecC---------CCCCc
Q 036374 103 DMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNK-----------IIGA-RYYS---------GINTT 161 (706)
Q Consensus 103 GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k-----------~ig~-~~~~---------~~~~~ 161 (706)
||+|||||||||++||+|.+.- ..+++|..+.. .... .+++ .....
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~-------------~~g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 67 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVL-------------LPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGV 67 (285)
T ss_pred CCEEEEecCCCCCCCcchhhcc-------------ccCcccccCcccccCCCCCCCCCCCcccccccccccccccccCCC
Confidence 7999999999999999997642 11222211000 0000 0000 01223
Q ss_pred ccccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHH----------HCC
Q 036374 162 REYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAI----------ADG 231 (706)
Q Consensus 162 ~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai----------~~g 231 (706)
.|. .+|||||||||+|...++. | +.||||+|+|+.+|+++ ..+...+++++|++|++ .++
T Consensus 68 ~~~-~~HGT~vAgiiaa~~~~~~---~-----~~GvAp~a~i~~~~v~~-~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~ 137 (285)
T cd07496 68 SPS-SWHGTHVAGTIAAVTNNGV---G-----VAGVAWGARILPVRVLG-KCGGTLSDIVDGMRWAAGLPVPGVPVNPNP 137 (285)
T ss_pred CCC-CCCHHHHHHHHhCcCCCCC---C-----ceeecCCCeEEEEEEec-CCCCcHHHHHHHHHHHhccCcCCCcccCCC
Confidence 455 7899999999999864322 2 28999999999999998 66668899999999998 457
Q ss_pred CcEEEEcccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CCcccCCCceEEEccccCCcceeeeEEeCCCeE
Q 036374 232 VDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKP-ASTVVVAPWILTVAGSSIDRPFIDKAILGDGTT 310 (706)
Q Consensus 232 v~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~ 310 (706)
++|||||||..... ...+..++..+.++|++||+||||+|... ...+...+++|+||+++.+
T Consensus 138 ~~Iin~S~G~~~~~---~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~-------------- 200 (285)
T cd07496 138 AKVINLSLGGDGAC---SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR-------------- 200 (285)
T ss_pred CeEEEeCCCCCCCC---CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC--------------
Confidence 89999999987221 45677788889999999999999999875 4556778899999987543
Q ss_pred EeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCC
Q 036374 311 LVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMS 390 (706)
Q Consensus 311 ~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~ 390 (706)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCC
Q 036374 391 HPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGG 470 (706)
Q Consensus 391 ~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~ 470 (706)
+.++.||++||.. ||+|||++|.+.....
T Consensus 201 -------------------------------------------~~~~~~S~~g~~v--------di~apG~~i~~~~~~~ 229 (285)
T cd07496 201 -------------------------------------------GQRASYSNYGPAV--------DVSAPGGDCASDVNGD 229 (285)
T ss_pred -------------------------------------------CCcccccCCCCCC--------CEEeCCCCccccCCCC
Confidence 3478899999987 9999999999887643
Q ss_pred CCCC--CCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 036374 471 WGPS--NHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTT 524 (706)
Q Consensus 471 ~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~T 524 (706)
.... ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 230 GYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 2110 00112224568999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=347.97 Aligned_cols=241 Identities=27% Similarity=0.315 Sum_probs=190.4
Q ss_pred cEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeecccccccC
Q 036374 104 MIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVG 183 (706)
Q Consensus 104 VvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~~ 183 (706)
|+|||||+|||++||+|.+.. ....++++..+ ...+.|. .+|||||||||+|+..+.
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-----------~~~~~~~~~~~-----------~~~~~~~-~~HGT~vAgiiag~~~~~ 57 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-----------KLVPGWNFVSN-----------NDPTSDI-DGHGTACAGVAAAVGNNG 57 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-----------CccCCccccCC-----------CCCCCCC-CCCHHHHHHHHHhccCCC
Confidence 789999999999999997520 01111122111 1234566 899999999999985322
Q ss_pred CCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHHHHHh-C
Q 036374 184 ASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAME-K 262 (706)
Q Consensus 184 ~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~-~ 262 (706)
..+.|+||+|+|+.+|++.....+...++.++++++++.+++|||||||...........+..++..+.+ +
T Consensus 58 --------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~ 129 (242)
T cd07498 58 --------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGK 129 (242)
T ss_pred --------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhhcC
Confidence 2238999999999999998333467889999999999999999999999874444456677778888888 9
Q ss_pred CcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcc
Q 036374 263 GILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSEL 342 (706)
Q Consensus 263 Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~ 342 (706)
|+++|+||||+|......+...+++|+||+.+.+
T Consensus 130 gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~---------------------------------------------- 163 (242)
T cd07498 130 GGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN---------------------------------------------- 163 (242)
T ss_pred CeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC----------------------------------------------
Confidence 9999999999998776667789999999987643
Q ss_pred cccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEE
Q 036374 343 ASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHI 422 (706)
Q Consensus 343 ~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i 422 (706)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHH
Q 036374 423 LRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAA 502 (706)
Q Consensus 423 ~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a 502 (706)
+.+++||++||.. |++|||.+++......... .....+.|..++|||||||+|||++
T Consensus 164 -----------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~~~~~~~~~~~GTS~Aap~vaG~~ 220 (242)
T cd07498 164 -----------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GDYPGGGYGSFSGTSFASPVAAGVA 220 (242)
T ss_pred -----------CCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----ccCCCCceEeeCcHHHHHHHHHHHH
Confidence 3467899999987 9999999998875432111 1122456889999999999999999
Q ss_pred HHHHhhCCCCCHHHHHHHHHhc
Q 036374 503 AYVRSFHPDWSPSSIKSALMTT 524 (706)
Q Consensus 503 ALl~~~~P~lsp~~ik~~L~~T 524 (706)
|||+|++|+|+++|||++|++|
T Consensus 221 All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 221 ALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=355.94 Aligned_cols=264 Identities=25% Similarity=0.227 Sum_probs=184.1
Q ss_pred cCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceee
Q 036374 96 REPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASI 175 (706)
Q Consensus 96 ~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi 175 (706)
..+++|+||+|||||+|||.+||+|.+... ...+ |.+..++.|. .|||||||||
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~-------------~~~~------------~~~~~~~~d~-~gHGT~VAgi 55 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI-------------TTKS------------FVGGEDVQDG-HGHGTHCAGT 55 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc-------------cCcc------------cCCCCCCCCC-CCcHHHHHHH
Confidence 357899999999999999999999975311 1111 1112234577 8999999999
Q ss_pred cccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCC--------C-C
Q 036374 176 AAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFA--------F-D 246 (706)
Q Consensus 176 ~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~--------~-~ 246 (706)
|+|+..+ +...||||+|+|+.+|++.....+...++++||+||++.|++|||||||.... . .
T Consensus 56 iag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~ 126 (297)
T cd07480 56 IFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGL 126 (297)
T ss_pred HhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccCCCCc
Confidence 9997532 22379999999999999983344777789999999999999999999998631 0 1
Q ss_pred ChhhHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCCcc-----cCCCceEEEccccCCcceeeeEEeC
Q 036374 247 FAEDAVAIGAFHA---------------MEKGILTAVPTGNMGPKPASTV-----VVAPWILTVAGSSIDRPFIDKAILG 306 (706)
Q Consensus 247 ~~~~~~~~a~~~a---------------~~~Gv~vV~AAGN~G~~~~~~~-----~~~p~vitVga~~~~~~~~~~~~~~ 306 (706)
.....+......+ .++|+++|+||||+|....... ...+.++.|++....
T Consensus 127 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~---------- 196 (297)
T cd07480 127 AFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGAL---------- 196 (297)
T ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCC----------
Confidence 1112233222233 6789999999999986543221 112233333332211
Q ss_pred CCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCC
Q 036374 307 DGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPAS 386 (706)
Q Consensus 307 ~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~ 386 (706)
T Consensus 197 -------------------------------------------------------------------------------- 196 (297)
T cd07480 197 -------------------------------------------------------------------------------- 196 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEec
Q 036374 387 TIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAA 466 (706)
Q Consensus 387 ~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa 466 (706)
+....|+++.+ ....||||+|||.+|+++
T Consensus 197 -----------------------------------------------~~~~~~~~~~~----~~~~~~dv~ApG~~i~s~ 225 (297)
T cd07480 197 -----------------------------------------------GRTGNFSAVAN----FSNGEVDIAAPGVDIVSA 225 (297)
T ss_pred -----------------------------------------------CCCCCccccCC----CCCCceEEEeCCCCeEee
Confidence 11122222222 234578999999999988
Q ss_pred ccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCC--CCCCCCCCCCCCCC
Q 036374 467 YTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNG--TVNRGREFDYGSGH 544 (706)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~--~~~~~~~~~~G~G~ 544 (706)
.+ ++.|..++|||||||+|||++|||+|++|++++.+++.+|++....... .........+|+|+
T Consensus 226 ~~-------------~~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~g~G~ 292 (297)
T cd07480 226 AP-------------GGGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQFAPGLDLPDRGVGL 292 (297)
T ss_pred cC-------------CCcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCCCCCCCChhhcCCce
Confidence 76 3569999999999999999999999999999999888888854332111 11124567899999
Q ss_pred CCcc
Q 036374 545 IDPV 548 (706)
Q Consensus 545 id~~ 548 (706)
+++.
T Consensus 293 ~~~~ 296 (297)
T cd07480 293 GLAP 296 (297)
T ss_pred eecC
Confidence 8875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=349.83 Aligned_cols=248 Identities=19% Similarity=0.102 Sum_probs=179.4
Q ss_pred cCCccccccCCC-CCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccC
Q 036374 88 MGFPETVKREPT-VESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQL 166 (706)
Q Consensus 88 ig~~~~~~~~~~-~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~ 166 (706)
|+++ .+|+... .|+||+|+|||+|||.+||+|.+.... . .. ...+.|. .
T Consensus 2 i~~~-~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~-------~------~~---------------~~~~~d~-~ 51 (277)
T cd04843 2 INAR-YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT-------L------IS---------------GLTDQAD-S 51 (277)
T ss_pred CChH-HHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc-------c------cC---------------CCCCCCC-C
Confidence 4566 8998744 599999999999999999999753111 0 00 0124566 8
Q ss_pred CCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHH----CCCcEEEEcccCC
Q 036374 167 GHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIA----DGVDIILTGATYG 242 (706)
Q Consensus 167 gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~----~gv~VIN~SlG~~ 242 (706)
+|||||||||+|..+ ..| +.||||+|+|+++|++. .++++++|++|++ .++.+||||||..
T Consensus 52 gHGT~VAGiIaa~~n--------~~G-~~GvAp~a~l~~i~v~~------~~~~~~ai~~A~~~~~~~~v~~in~s~g~~ 116 (277)
T cd04843 52 DHGTAVLGIIVAKDN--------GIG-VTGIAHGAQAAVVSSTR------VSNTADAILDAADYLSPGDVILLEMQTGGP 116 (277)
T ss_pred CCcchhheeeeeecC--------CCc-eeeeccCCEEEEEEecC------CCCHHHHHHHHHhccCCCCEEEEEccccCC
Confidence 999999999998631 112 38999999999999985 2356677777776 4567899999986
Q ss_pred CCCC-----ChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcc-------------cCCCceEEEccccCCcceeeeEE
Q 036374 243 FAFD-----FAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTV-------------VVAPWILTVAGSSIDRPFIDKAI 304 (706)
Q Consensus 243 ~~~~-----~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~-------------~~~p~vitVga~~~~~~~~~~~~ 304 (706)
.... .....+..++.++.++|+++|+||||++....... ...+++|+|||++.+.
T Consensus 117 ~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~------- 189 (277)
T cd04843 117 NNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTT------- 189 (277)
T ss_pred CcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCC-------
Confidence 3211 12334556777888999999999999986531111 1235678887765321
Q ss_pred eCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEec
Q 036374 305 LGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQP 384 (706)
Q Consensus 305 ~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~ 384 (706)
T Consensus 190 -------------------------------------------------------------------------------- 189 (277)
T cd04843 190 -------------------------------------------------------------------------------- 189 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEE
Q 036374 385 ASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQIL 464 (706)
Q Consensus 385 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~ 464 (706)
...++.||++||.. ||.|||++|+
T Consensus 190 ------------------------------------------------~~~~~~fSn~G~~v--------di~APG~~i~ 213 (277)
T cd04843 190 ------------------------------------------------GHTRLAFSNYGSRV--------DVYGWGENVT 213 (277)
T ss_pred ------------------------------------------------CCccccccCCCCcc--------ceEcCCCCeE
Confidence 01278899999987 9999999999
Q ss_pred ecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHh----h-CCCCCHHHHHHHHHhccc
Q 036374 465 AAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRS----F-HPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 465 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~P~lsp~~ik~~L~~TA~ 526 (706)
++....... ..+...+.|..++|||||||||||++|||++ + +|+|+|+|||++|++|++
T Consensus 214 s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 214 TTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred ecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 998653211 0111123357899999999999999999975 3 499999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=351.20 Aligned_cols=323 Identities=25% Similarity=0.288 Sum_probs=248.5
Q ss_pred eEEEEEecCCCCCCCCchhHHHHHHHhccC------cccCCc------------cEEEEec---ceeeEEEEEcCHHHHH
Q 036374 2 QVCIVYMGSLPAGEYSPLAHHLSVLQEGIQ------DSLAND------------VLVRSYE---RSFNGFAAKLTDEEQN 60 (706)
Q Consensus 2 ~~yiv~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~------------~i~~~y~---~~~ng~s~~~~~~~~~ 60 (706)
..|||.++ +...++.+..|.+++.+.-.. .++... .|.+.|. .+|+|+.-.++.+-+.
T Consensus 81 ~~YiV~f~-~~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~v~ 159 (501)
T KOG1153|consen 81 SRYIVVFK-PDASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGESVC 159 (501)
T ss_pred cceEEEeC-CCccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccceee
Confidence 37999999 444455677777776554331 111111 1555554 3889999999999999
Q ss_pred HHhcCCCeeEEEcccccccc--------ccCCccccCCcc------cccc----CCCCCCCcEEEEEccccCCCCcCCCC
Q 036374 61 RISRMDGIVSVFPSKTLQLQ--------TTRSWDFMGFPE------TVKR----EPTVESDMIIGVLDNGIWPESDMFDD 122 (706)
Q Consensus 61 ~L~~~~~V~~v~~~~~~~~~--------~~~s~~~ig~~~------~~~~----~~~~G~GVvVgVIDtGid~~Hp~f~~ 122 (706)
.++++|-++.++++...... +.-.|.+-.+.. .-|- +...|+||...|+||||+.+||+|.+
T Consensus 160 ~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dFeg 239 (501)
T KOG1153|consen 160 SIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDFEG 239 (501)
T ss_pred eeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEeccccccccccccc
Confidence 99999999999998776542 222333322211 1121 23489999999999999999999976
Q ss_pred CCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeecccccccCCCcccCCCcceeeccCCCe
Q 036374 123 KSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSAR 202 (706)
Q Consensus 123 ~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~ 202 (706)
+. .| | .|.. .+ ..-.|+ +||||||||+|++.. .|+|-+++
T Consensus 240 Ra------~w-G-a~i~-----~~------------~~~~D~-nGHGTH~AG~I~sKt--------------~GvAK~s~ 279 (501)
T KOG1153|consen 240 RA------IW-G-ATIP-----PK------------DGDEDC-NGHGTHVAGLIGSKT--------------FGVAKNSN 279 (501)
T ss_pred ce------ec-c-cccC-----CC------------Cccccc-CCCcceeeeeeeccc--------------cccccccc
Confidence 42 23 2 1211 00 122466 999999999999985 89999999
Q ss_pred EEEEEeecCCCCCCHHHHHHHHHHHHHC---------CCcEEEEcccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCC
Q 036374 203 IAAYRVCHYPWPCNEADILAAFDDAIAD---------GVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNM 273 (706)
Q Consensus 203 l~~~kv~~~~~g~~~~~i~~ai~~ai~~---------gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~ 273 (706)
|+++||+++++.+..+++++++|++++. +..|.|||+|+. ..-.+..|++.|.+.|+++++||||+
T Consensus 280 lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~-----~S~aLn~AV~~A~~~Gi~fa~AAGNe 354 (501)
T KOG1153|consen 280 LVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGF-----RSAALNMAVNAASERGIHFAVAAGNE 354 (501)
T ss_pred eEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCc-----ccHHHHHHHHHHhhcCeEEEEcCCCc
Confidence 9999999965559999999999999985 568999999998 33578889999999999999999999
Q ss_pred CCCCC-CcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCC
Q 036374 274 GPKPA-STVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCL 352 (706)
Q Consensus 274 G~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~ 352 (706)
-.+.+ +.++.+..+|||||++..
T Consensus 355 ~eDAC~~SPass~~aITVGAst~~-------------------------------------------------------- 378 (501)
T KOG1153|consen 355 HEDACNSSPASSKKAITVGASTKN-------------------------------------------------------- 378 (501)
T ss_pred chhhhccCcccccccEEecccccc--------------------------------------------------------
Confidence 87765 456688999999998754
Q ss_pred CCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCC
Q 036374 353 DENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDA 432 (706)
Q Consensus 353 ~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~ 432 (706)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCC-
Q 036374 433 APVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPD- 511 (706)
Q Consensus 433 ~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~- 511 (706)
+.++.||+||++. ||.|||.+|+|+|.+. ...-...||||||+|||||++|..+..+|.
T Consensus 379 -D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs-----------~~at~ilSGTSMasPhvaG~aAy~ls~~~~~ 438 (501)
T KOG1153|consen 379 -DTIAFFSNWGKCV--------DIFAPGVNILSSWIGS-----------NNATAILSGTSMASPHVAGLAAYFLSLGPLP 438 (501)
T ss_pred -cchhhhcCcccee--------eeecCchhhhhhhhcC-----------ccchheeecccccCcchhhhHHHhhhcCCCC
Confidence 5689999999999 9999999999999864 245678999999999999999999999883
Q ss_pred --------CCHHHHHHHHHhccc
Q 036374 512 --------WSPSSIKSALMTTAL 526 (706)
Q Consensus 512 --------lsp~~ik~~L~~TA~ 526 (706)
.||.++|..+..-..
T Consensus 439 ~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 439 DSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hHHhhhccCChHHhhhhhhcccc
Confidence 388888887776443
|
|
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=342.05 Aligned_cols=251 Identities=26% Similarity=0.358 Sum_probs=190.1
Q ss_pred CCcEEEEEccccCCCCcCCCCCCCCCC-CCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeeccccc
Q 036374 102 SDMIIGVLDNGIWPESDMFDDKSFGPP-PKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNL 180 (706)
Q Consensus 102 ~GVvVgVIDtGid~~Hp~f~~~~~~~~-~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~ 180 (706)
+||+|||||||||++||+|.+...... ...+.+ ....+..+. +...+........++.|. .+|||||||||+|..
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~d~-~~HGT~va~ii~~~~ 77 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNG-IDDDGNGYV--DDIYGWNFVNNDNDPMDD-NGHGTHVAGIIGAVG 77 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccC-cccCCCCcc--cCCCcccccCCCCCCCCC-CCcHHHHHHHHHCcC
Confidence 699999999999999999986421100 001111 111111111 001111111223556777 999999999999985
Q ss_pred ccCCCcccCCCcceeeccCCCeEEEEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHHHH
Q 036374 181 VVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-CNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHA 259 (706)
Q Consensus 181 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a 259 (706)
..+. .+.|+||+|+|+.+|++. ..+ ++..+++++++++++.+++|||+|||.... ...+..++.++
T Consensus 78 ~~~~--------~~~GvAp~a~l~~~~~~~-~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~----~~~~~~~~~~~ 144 (259)
T cd07473 78 NNGI--------GIAGVAWNVKIMPLKFLG-ADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP----SQALRDAIARA 144 (259)
T ss_pred CCCC--------ceEEeCCCCEEEEEEEeC-CCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC----CHHHHHHHHHH
Confidence 4322 238999999999999998 544 888999999999999999999999998722 45777788888
Q ss_pred HhCCcEEEEecCCCCCCC---CCccc--CCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCC
Q 036374 260 MEKGILTAVPTGNMGPKP---ASTVV--VAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTN 334 (706)
Q Consensus 260 ~~~Gv~vV~AAGN~G~~~---~~~~~--~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~ 334 (706)
.++|+++|+||||+|... ..++. ..+++|+||+.+.+
T Consensus 145 ~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~-------------------------------------- 186 (259)
T cd07473 145 IDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN-------------------------------------- 186 (259)
T ss_pred HhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC--------------------------------------
Confidence 999999999999998762 22332 45788999886533
Q ss_pred CCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhc
Q 036374 335 ASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINS 414 (706)
Q Consensus 335 ~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~ 414 (706)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccch
Q 036374 415 TEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIA 494 (706)
Q Consensus 415 ~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 494 (706)
+.++.||++||. +||+.|||.++++..+ ...|..++|||||
T Consensus 187 -------------------~~~~~~s~~g~~-------~~~~~apG~~~~~~~~-------------~~~~~~~~GTS~A 227 (259)
T cd07473 187 -------------------DALASFSNYGKK-------TVDLAAPGVDILSTSP-------------GGGYGYMSGTSMA 227 (259)
T ss_pred -------------------CCcCcccCCCCC-------CcEEEeccCCeEeccC-------------CCcEEEeccHhHH
Confidence 346679999985 4599999999999655 3568999999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 036374 495 SAFAAGAAAYVRSFHPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 495 aP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 526 (706)
||+|||++|||+|++|.+++++||++|++||+
T Consensus 228 aP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 228 TPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=333.78 Aligned_cols=226 Identities=31% Similarity=0.396 Sum_probs=184.7
Q ss_pred CcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeeccccccc
Q 036374 103 DMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVV 182 (706)
Q Consensus 103 GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~ 182 (706)
||+|||||+||+.+||+|.+. ...+.+|..+. ...+.|. .+|||||||||++....
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~-------------~~~~~~~~~~~----------~~~~~~~-~~HGT~vA~ii~~~~~~ 56 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN-------------IVGGANFTGDD----------NNDYQDG-NGHGTHVAGIIAALDNG 56 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc-------------ccCcccccCCC----------CCCCCCC-CCCHHHHHHHHhcccCC
Confidence 799999999999999999752 11122221111 0234566 89999999999997532
Q ss_pred CCCcccCCCcceeeccCCCeEEEEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHHHHHh
Q 036374 183 GASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-CNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAME 261 (706)
Q Consensus 183 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~ 261 (706)
. .+.|+||+|+|+.+|+++ ..+ +...++++++++|++.|++|||||||... ....+..++..+.+
T Consensus 57 ~---------~~~giap~a~i~~~~~~~-~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~----~~~~~~~~~~~a~~ 122 (229)
T cd07477 57 V---------GVVGVAPEADLYAVKVLN-DDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS----DSPALREAIKKAYA 122 (229)
T ss_pred C---------ccEeeCCCCEEEEEEEEC-CCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC----CCHHHHHHHHHHHH
Confidence 1 238999999999999998 444 67789999999999999999999999872 23456667778889
Q ss_pred CCcEEEEecCCCCCCCCCc--ccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCC
Q 036374 262 KGILTAVPTGNMGPKPAST--VVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPC 339 (706)
Q Consensus 262 ~Gv~vV~AAGN~G~~~~~~--~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~ 339 (706)
+|+++|+||||++...... +...+++|+||+++.+
T Consensus 123 ~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------------------------- 159 (229)
T cd07477 123 AGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN------------------------------------------- 159 (229)
T ss_pred CCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC-------------------------------------------
Confidence 9999999999998776554 7788999999987643
Q ss_pred CcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcE
Q 036374 340 SELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQ 419 (706)
Q Consensus 340 ~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~ 419 (706)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHH
Q 036374 420 VHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAA 499 (706)
Q Consensus 420 ~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 499 (706)
+.++.||++|+.. |+.|||.+|+++++. +.|..++|||||||+||
T Consensus 160 --------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~-------------~~~~~~~GTS~Aap~va 204 (229)
T cd07477 160 --------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN-------------NDYAYLSGTSMATPHVA 204 (229)
T ss_pred --------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC-------------CCEEEEccHHHHHHHHH
Confidence 3456799999876 999999999998773 45889999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHhc
Q 036374 500 GAAAYVRSFHPDWSPSSIKSALMTT 524 (706)
Q Consensus 500 G~aALl~~~~P~lsp~~ik~~L~~T 524 (706)
|++|||+|++|++++.+||++|++|
T Consensus 205 g~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 205 GVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999999976
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=351.18 Aligned_cols=272 Identities=31% Similarity=0.409 Sum_probs=205.7
Q ss_pred EEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCC----CCCcccccCCCcccceeeccccc
Q 036374 105 IIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSG----INTTREYQLGHGTHMASIAAGNL 180 (706)
Q Consensus 105 vVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~----~~~~~D~~~gHGThVAgi~ag~~ 180 (706)
+|||||||||++||+|....+ . ..++.+.+.+.+ .....|. .+|||||||||+|..
T Consensus 1 ~V~viDtGid~~h~~~~~~~~-----------~--------~~~~~~~~~~~~~~~~~~~~~~~-~~HGT~va~ii~~~~ 60 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF-----------I--------WSKVPGGYNFVDGNPNPSPSDDD-NGHGTHVAGIIAGNG 60 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE-----------E--------EEEEEEEEETTTTBSTTTSSSTS-SSHHHHHHHHHHHTT
T ss_pred CEEEEcCCcCCCChhHccCCc-----------c--------cccccceeeccCCCCCcCccccC-CCccchhhhhccccc
Confidence 699999999999999971111 0 111222222321 2334566 899999999999986
Q ss_pred ccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHH-HCCCcEEEEcccCCC--CCCChhhHHHHHHH
Q 036374 181 VVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAI-ADGVDIILTGATYGF--AFDFAEDAVAIGAF 257 (706)
Q Consensus 181 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai-~~gv~VIN~SlG~~~--~~~~~~~~~~~a~~ 257 (706)
. ... ....|+||+|+|+.+|++. ..+....++++++++++ +.+++|||||||... ........+..+.+
T Consensus 61 -~-~~~-----~~~~Gva~~a~l~~~~i~~-~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~ 132 (282)
T PF00082_consen 61 -G-NNG-----PGINGVAPNAKLYSYKIFD-NSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAID 132 (282)
T ss_dssp -S-SSS-----SSETCSSTTSEEEEEECSS-TTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHH
T ss_pred -c-ccc-----ccccccccccccccccccc-ccccccccccchhhhhhhccCCccccccccccccccccccccccccccc
Confidence 2 111 2238999999999999987 55577888999999999 899999999999831 11223344566677
Q ss_pred HHHhCCcEEEEecCCCCCCCCC---cccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCC
Q 036374 258 HAMEKGILTAVPTGNMGPKPAS---TVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTN 334 (706)
Q Consensus 258 ~a~~~Gv~vV~AAGN~G~~~~~---~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~ 334 (706)
.+.++|+++|+||||+|..... .+...+++|+||+.+.+
T Consensus 133 ~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~-------------------------------------- 174 (282)
T PF00082_consen 133 YAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN-------------------------------------- 174 (282)
T ss_dssp HHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT--------------------------------------
T ss_pred cccccCcceeeccccccccccccccccccccccccccccccc--------------------------------------
Confidence 8889999999999999876543 44556888999886633
Q ss_pred CCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhc
Q 036374 335 ASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINS 414 (706)
Q Consensus 335 ~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~ 414 (706)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccch
Q 036374 415 TEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIA 494 (706)
Q Consensus 415 ~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 494 (706)
+.++.||++|+.. ..+++||||+|||.+|++.++... ...|..++|||||
T Consensus 175 -------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~----------~~~~~~~~GTS~A 224 (282)
T PF00082_consen 175 -------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSD----------RGSYTSFSGTSFA 224 (282)
T ss_dssp -------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTE----------SEEEEEEESHHHH
T ss_pred -------------------ccccccccccccc-cccccccccccccccccccccccc----------cccccccCcCCch
Confidence 2467899997543 278999999999999988886431 1458899999999
Q ss_pred hHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCC
Q 036374 495 SAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATN 552 (706)
Q Consensus 495 aP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~ 552 (706)
||+|||++|||++++|+|++.+||.+|++||.++........+..||||+||+.+|++
T Consensus 225 ap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 225 APVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-HHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhCHHHHhC
Confidence 9999999999999999999999999999999998732223466788999999999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=334.54 Aligned_cols=217 Identities=21% Similarity=0.208 Sum_probs=166.9
Q ss_pred CCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeeccccc
Q 036374 101 ESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNL 180 (706)
Q Consensus 101 G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~ 180 (706)
+++|+|||||||||++||+|.+. ...+.+|.+...- +. .......|. .||||||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~-------------i~~~~~~~~~~~~-~~---~~~~~~~d~-~gHGT~vAgiI---- 59 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK-------------IIGGKSFSPYEGD-GN---KVSPYYVSA-DGHGTAMARMI---- 59 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc-------------cccCCCCCCCCCC-cc---cCCCCCCCC-CCcHHHHHHHH----
Confidence 78999999999999999999742 1222333221100 00 001122356 89999999999
Q ss_pred ccCCCcccCCCcceeeccCCCeEEEEEeecCCC------CCCHHHHHHHHHHHHHCCCcEEEEcccCCCCC--CChhhHH
Q 036374 181 VVGASFDGLAKGNVRGAVPSARIAAYRVCHYPW------PCNEADILAAFDDAIADGVDIILTGATYGFAF--DFAEDAV 252 (706)
Q Consensus 181 ~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~------g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~--~~~~~~~ 252 (706)
.|+||+|+|+++|+++... .++...+++||+||+++|++|||||||..... ......+
T Consensus 60 --------------~gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~~~~~l 125 (247)
T cd07491 60 --------------CRICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDNDINEL 125 (247)
T ss_pred --------------HHHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeecccccccccchHHH
Confidence 4689999999999998322 25677899999999999999999999987221 1135678
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCCC-Cc--ccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeE
Q 036374 253 AIGAFHAMEKGILTAVPTGNMGPKPA-ST--VVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLS 329 (706)
Q Consensus 253 ~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~--~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv 329 (706)
..++.+|.++|++||+||||+|.... .+ +...+++|+|||.+.+
T Consensus 126 ~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~--------------------------------- 172 (247)
T cd07491 126 ENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADED--------------------------------- 172 (247)
T ss_pred HHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCC---------------------------------
Confidence 88888999999999999999997654 32 3467899999997644
Q ss_pred eccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHH
Q 036374 330 YGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVK 409 (706)
Q Consensus 330 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~ 409 (706)
T Consensus 173 -------------------------------------------------------------------------------- 172 (247)
T cd07491 173 -------------------------------------------------------------------------------- 172 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEec
Q 036374 410 LYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILS 489 (706)
Q Consensus 410 ~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~s 489 (706)
+.++.||++|+.. |+.|||++|+++.+.. ..+.|..++
T Consensus 173 ------------------------g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~----------~~~~~~~~s 210 (247)
T cd07491 173 ------------------------GGADAPVGDEDRV--------DYILPGENVEARDRPP----------LSNSFVTHT 210 (247)
T ss_pred ------------------------CCCccccCCCCcc--------eEEeCCCceecCCcCC----------CCCCeeeec
Confidence 3467799999887 9999999999887521 135699999
Q ss_pred cccchhHHHHHHHHHHHhh
Q 036374 490 GTSIASAFAAGAAAYVRSF 508 (706)
Q Consensus 490 GTSmAaP~VAG~aALl~~~ 508 (706)
|||||||||||+||||++.
T Consensus 211 GTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 211 GSSVATALAAGLAALILYC 229 (247)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=344.82 Aligned_cols=252 Identities=19% Similarity=0.141 Sum_probs=182.6
Q ss_pred ccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcc--cc
Q 036374 87 FMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTR--EY 164 (706)
Q Consensus 87 ~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~--D~ 164 (706)
.++++ .+|+.+++|+||+|+|||||||++||+|.+.... ..+++|..+. ....+. |.
T Consensus 25 ~~~~~-~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-----------~~~~~~~~~~---------~~~~~~~~~~ 83 (297)
T cd04059 25 DLNVT-PAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-----------EASYDFNDND---------PDPTPRYDDD 83 (297)
T ss_pred CcccH-HHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-----------cccccccCCC---------CCCCCccccc
Confidence 46677 8999999999999999999999999999753111 0112221110 012223 56
Q ss_pred cCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCC
Q 036374 165 QLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFA 244 (706)
Q Consensus 165 ~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~ 244 (706)
.||||||||||+|+..... ...||||+|+|+.+|++. .. ........++.++.+ .++|||||||....
T Consensus 84 -~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~-~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~~~ 151 (297)
T cd04059 84 -NSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLD-GD-VTDVVEAESLGLNPD-YIDIYSNSWGPDDD 151 (297)
T ss_pred -cccCcceeeEEEeecCCCc--------ccccccccceEeEEEecC-Cc-cccHHHHHHHhcccC-CceEEECCCCCCCC
Confidence 8999999999999853221 128999999999999998 33 334445555555544 56999999998632
Q ss_pred CC---ChhhHHHHHHHHHHh-----CCcEEEEecCCCCCCCCC----cccCCCceEEEccccCCcceeeeEEeCCCeEEe
Q 036374 245 FD---FAEDAVAIGAFHAME-----KGILTAVPTGNMGPKPAS----TVVVAPWILTVAGSSIDRPFIDKAILGDGTTLV 312 (706)
Q Consensus 245 ~~---~~~~~~~~a~~~a~~-----~Gv~vV~AAGN~G~~~~~----~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~ 312 (706)
.. ........++.++.+ +|+++|+||||+|..... .....+++|+|||++.+
T Consensus 152 ~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~---------------- 215 (297)
T cd04059 152 GKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN---------------- 215 (297)
T ss_pred CCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC----------------
Confidence 21 122233444445443 699999999999973221 12356889999987643
Q ss_pred eeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCC
Q 036374 313 GDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHP 392 (706)
Q Consensus 313 g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~ 392 (706)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCc-------EEe
Q 036374 393 TPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQ-------ILA 465 (706)
Q Consensus 393 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~-------I~s 465 (706)
+.++.||++|+.. ++.|||.. |++
T Consensus 216 -----------------------------------------g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~~ 246 (297)
T cd04059 216 -----------------------------------------GVRASYSEVGSSV--------LASAPSGGSGNPEASIVT 246 (297)
T ss_pred -----------------------------------------CCCcCCCCCCCcE--------EEEecCCCCCCCCCceEe
Confidence 3467899999988 89999987 665
Q ss_pred cccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 036374 466 AYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 466 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 526 (706)
+.... ....|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 247 ~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 247 TDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 54421 0245778999999999999999999999999999999999999995
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=340.91 Aligned_cols=254 Identities=25% Similarity=0.276 Sum_probs=174.3
Q ss_pred CcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeeccccccc
Q 036374 103 DMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVV 182 (706)
Q Consensus 103 GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~ 182 (706)
.|+|||||||||++||+|.+.-... ...+ .....+... ..........+.|. .||||||||+|+|+..
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~-~~~~-----~~~~~~~~~----~~~~~~~~~~~~d~-~gHGT~vAgiia~~~~- 68 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSY-SKNL-----VPKGGYDGK----EAGETGDINDIVDK-LGHGTAVAGQIAANGN- 68 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccc-cccc-----ccCCCcCCc----cccccCCCCcCCCC-CCcHhHHHHHHhcCCC-
Confidence 4899999999999999998521110 0000 000000000 00000012344577 8999999999998732
Q ss_pred CCCcccCCCcceeeccCCCeEEEEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCC-------ChhhHHHH
Q 036374 183 GASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-CNEADILAAFDDAIADGVDIILTGATYGFAFD-------FAEDAVAI 254 (706)
Q Consensus 183 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~-------~~~~~~~~ 254 (706)
..||||+|+|+.+|+++ ..+ ....+++++|++|++.+++|||||||...... .....+..
T Consensus 69 -----------~~GvAp~a~i~~~~v~~-~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~ 136 (294)
T cd07482 69 -----------IKGVAPGIGIVSYRVFG-SCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKK 136 (294)
T ss_pred -----------CceeCCCCEEEEEEeec-CCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhHHHHH
Confidence 16999999999999998 554 48889999999999999999999999852211 11234666
Q ss_pred HHHHHHhCCcEEEEecCCCCCCCCC----------------------cccCCCceEEEccccCCcceeeeEEeCCCeEEe
Q 036374 255 GAFHAMEKGILTAVPTGNMGPKPAS----------------------TVVVAPWILTVAGSSIDRPFIDKAILGDGTTLV 312 (706)
Q Consensus 255 a~~~a~~~Gv~vV~AAGN~G~~~~~----------------------~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~ 312 (706)
++..+.++|++||+||||+|..... .+...+++|+|||++
T Consensus 137 ~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~------------------ 198 (294)
T cd07482 137 AINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATD------------------ 198 (294)
T ss_pred HHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeC------------------
Confidence 7777888999999999999865311 122334444444433
Q ss_pred eeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCC
Q 036374 313 GDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHP 392 (706)
Q Consensus 313 g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~ 392 (706)
T Consensus 199 -------------------------------------------------------------------------------- 198 (294)
T cd07482 199 -------------------------------------------------------------------------------- 198 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCC
Q 036374 393 TPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWG 472 (706)
Q Consensus 393 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~ 472 (706)
..+.++.||++|+.. +|++|||+++.........
T Consensus 199 ---------------------------------------~~~~~~~~S~~g~~~-------~~~~apG~~~~~~~~~~~~ 232 (294)
T cd07482 199 ---------------------------------------NNGNLSSFSNYGNSR-------IDLAAPGGDFLLLDQYGKE 232 (294)
T ss_pred ---------------------------------------CCCCcCccccCCCCc-------ceEECCCCCcccccccCcc
Confidence 224577899988754 4999999998532211100
Q ss_pred ---CCC------CCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCH-HHHHHHHHhc
Q 036374 473 ---PSN------HPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSP-SSIKSALMTT 524 (706)
Q Consensus 473 ---~~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp-~~ik~~L~~T 524 (706)
... .......+.|..++|||||||+|||++|||+|++|.|++ .|||++|++|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 233 KWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred ccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 000 001123467899999999999999999999999999999 9999999986
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=324.72 Aligned_cols=222 Identities=19% Similarity=0.153 Sum_probs=172.9
Q ss_pred CcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeeccccccc
Q 036374 103 DMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVV 182 (706)
Q Consensus 103 GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~ 182 (706)
||+|||||||||++||+|.+.-. .+..+.+++ +......+.|. .||||||||||++
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~-------------~~~~~~~~~------~~~~~~~~~d~-~gHGT~vAgiia~---- 56 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL-------------DGEVTIDLE------IIVVSAEGGDK-DGHGTACAGIIKK---- 56 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc-------------ccccccccc------cccCCCCCCCC-CCcHHHHHHHHHc----
Confidence 79999999999999999975311 111111100 01112345567 8999999999965
Q ss_pred CCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHHHHHhC
Q 036374 183 GASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAMEK 262 (706)
Q Consensus 183 ~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~ 262 (706)
.+|+++|+.+|+++....+..+++++||+|+++.|++|||||||.... .....+..++.++.++
T Consensus 57 --------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~--~~~~~~~~~~~~a~~~ 120 (222)
T cd07492 57 --------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGD--RDFPLLKELLEYAYKA 120 (222)
T ss_pred --------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC--CcCHHHHHHHHHHHHC
Confidence 359999999999983333888899999999999999999999998722 2335667778888899
Q ss_pred CcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcc
Q 036374 263 GILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSEL 342 (706)
Q Consensus 263 Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~ 342 (706)
|+++|+||||++.... .+...+++|+|++.+.+.
T Consensus 121 g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~--------------------------------------------- 154 (222)
T cd07492 121 GGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD--------------------------------------------- 154 (222)
T ss_pred CCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC---------------------------------------------
Confidence 9999999999986543 366778899998765321
Q ss_pred cccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEE
Q 036374 343 ASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHI 422 (706)
Q Consensus 343 ~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i 422 (706)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHH
Q 036374 423 LRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAA 502 (706)
Q Consensus 423 ~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a 502 (706)
.. +.+++ ++|+.|||.+|+++.+. +.|..++|||||||+|||++
T Consensus 155 ------------~~---~~~~~--------~~~~~apg~~i~~~~~~-------------~~~~~~~GTS~Aap~vaG~~ 198 (222)
T cd07492 155 ------------PK---SFWYI--------YVEFSADGVDIIAPAPH-------------GRYLTVSGNSFAAPHVTGMV 198 (222)
T ss_pred ------------Cc---ccccC--------CceEEeCCCCeEeecCC-------------CCEEEeccHHHHHHHHHHHH
Confidence 00 11133 34999999999998773 46899999999999999999
Q ss_pred HHHHhhCCCCCHHHHHHHHHhccc
Q 036374 503 AYVRSFHPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 503 ALl~~~~P~lsp~~ik~~L~~TA~ 526 (706)
|||+|++|+|+++|||++|+.||+
T Consensus 199 All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 199 ALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHhCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=325.85 Aligned_cols=243 Identities=25% Similarity=0.272 Sum_probs=185.4
Q ss_pred CCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeecccc
Q 036374 100 VESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGN 179 (706)
Q Consensus 100 ~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~ 179 (706)
+|+||+|+|||+||+.+||+|.+......... ..++. ......|. .+|||||||||+|.
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~~-----------~~~~~---------~~~~~~~~-~~HGT~vagiiag~ 59 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYYV-----------AVNDA---------GYASNGDG-DSHGTHVAGVIAAA 59 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccccccc-----------ccccc---------cCCCCCCC-CChHHHHHHHHhcC
Confidence 69999999999999999999986422110000 00000 01234566 89999999999998
Q ss_pred cccCCCcccCCCcceeeccCCCeEEEEEeecCCC--CCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCC-----------
Q 036374 180 LVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPW--PCNEADILAAFDDAIADGVDIILTGATYGFAFD----------- 246 (706)
Q Consensus 180 ~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~--g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~----------- 246 (706)
..+ ..+.|+||+|+|+.+|+++ .. .+....+.++++++++.+++|||||||......
T Consensus 60 ~~~---------~~~~GiAp~a~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~ 129 (267)
T cd04848 60 RDG---------GGMHGVAPDATLYSARASA-SAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAA 129 (267)
T ss_pred cCC---------CCcccCCcCCEEEEEeccC-CCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhcc
Confidence 532 2338999999999999998 44 366788899999999999999999999873221
Q ss_pred ChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCc---------ccCCCceEEEccccCCcceeeeEEeCCCeEEeeeecc
Q 036374 247 FAEDAVAIGAFHAMEKGILTAVPTGNMGPKPAST---------VVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVN 317 (706)
Q Consensus 247 ~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~---------~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~ 317 (706)
.....+...+..+.++|+++|+||||++...... +...+++|+||+.+.+.
T Consensus 130 ~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~-------------------- 189 (267)
T cd04848 130 TQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG-------------------- 189 (267)
T ss_pred ccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC--------------------
Confidence 1445667777788899999999999998654322 23457889998876542
Q ss_pred CCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccE
Q 036374 318 PFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPT 397 (706)
Q Consensus 318 ~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~ 397 (706)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccc--cCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCC
Q 036374 398 VILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHP--FSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSN 475 (706)
Q Consensus 398 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~--fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~ 475 (706)
.... ||++|+.. ..++++|||.+|+++.+..
T Consensus 190 -------------------------------------~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~----- 222 (267)
T cd04848 190 -------------------------------------TIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDG----- 222 (267)
T ss_pred -------------------------------------Ccccccccccchhh-----hhheeecCcCceeecccCC-----
Confidence 1222 47777644 1347999999999987631
Q ss_pred CCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 036374 476 HPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTAL 526 (706)
Q Consensus 476 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~ 526 (706)
...|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 223 ------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 223 ------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred ------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 245889999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=321.67 Aligned_cols=349 Identities=22% Similarity=0.297 Sum_probs=261.3
Q ss_pred EEEEEecCCCCCCCCchhHHHHHHHhccCcccCCccE------EEEecceeeEEEEEcC-----HHHHHHHhcCCCeeEE
Q 036374 3 VCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVL------VRSYERSFNGFAAKLT-----DEEQNRISRMDGIVSV 71 (706)
Q Consensus 3 ~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i------~~~y~~~~ng~s~~~~-----~~~~~~L~~~~~V~~v 71 (706)
.|||+++.... ...|...+.+.|.+..-..-+| -..|-.-|.-+-++-. .-++++|..+|.|+.+
T Consensus 51 EyIv~F~~y~~----Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk~v 126 (1033)
T KOG4266|consen 51 EYIVRFKQYKP----AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVKVV 126 (1033)
T ss_pred eeEEEeccccc----chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCceee
Confidence 59999988665 4455555666665311111122 2334344444444332 2358899999999999
Q ss_pred Eccccccccc---------------------c--------------CCc----------cccCCccccccCCCCCCCcEE
Q 036374 72 FPSKTLQLQT---------------------T--------------RSW----------DFMGFPETVKREPTVESDMII 106 (706)
Q Consensus 72 ~~~~~~~~~~---------------------~--------------~s~----------~~ig~~~~~~~~~~~G~GVvV 106 (706)
.|.+.+..-. + .+. +.++++ -+|+.|++|++|+|
T Consensus 127 ~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad-~LWk~GyTGa~Vkv 205 (1033)
T KOG4266|consen 127 FPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGAD-HLWKKGYTGAKVKV 205 (1033)
T ss_pred cchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchh-hHHhccccCCceEE
Confidence 9987654210 0 000 113445 79999999999999
Q ss_pred EEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeecccccccCCCc
Q 036374 107 GVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVGASF 186 (706)
Q Consensus 107 gVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~~~~~ 186 (706)
||.|||+..+||.|+.- .+ -..|.. . ..-.|. .||||.|||+|||..
T Consensus 206 AiFDTGl~~~HPHFrnv--KE-RTNWTN------------E-----------~tLdD~-lgHGTFVAGvia~~~------ 252 (1033)
T KOG4266|consen 206 AIFDTGLRADHPHFRNV--KE-RTNWTN------------E-----------DTLDDN-LGHGTFVAGVIAGRN------ 252 (1033)
T ss_pred EEeecccccCCccccch--hh-hcCCcC------------c-----------cccccC-cccceeEeeeeccch------
Confidence 99999999999999742 00 012211 1 122344 899999999999874
Q ss_pred ccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHHHHHhCCcEE
Q 036374 187 DGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILT 266 (706)
Q Consensus 187 ~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~v 266 (706)
...|.||+++|+++|||.+..-..++.++.|+.+|+....||+|+|+|++ ++.+.|+-..+....+.++++
T Consensus 253 ------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP---DfmD~PFVeKVwEltAnNvIM 323 (1033)
T KOG4266|consen 253 ------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP---DFMDLPFVEKVWELTANNVIM 323 (1033)
T ss_pred ------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc---ccccchHHHHHHhhccCcEEE
Confidence 23899999999999999833348899999999999999999999999998 567788888888889999999
Q ss_pred EEecCCCCCCCCCcccCCC--ceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccc
Q 036374 267 AVPTGNMGPKPASTVVVAP--WILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELAS 344 (706)
Q Consensus 267 V~AAGN~G~~~~~~~~~~p--~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~ 344 (706)
|.|+||+|+-.++..+++. .|+-||..+
T Consensus 324 vSAiGNDGPLYGTLNNPaDQsDViGVGGId-------------------------------------------------- 353 (1033)
T KOG4266|consen 324 VSAIGNDGPLYGTLNNPADQSDVIGVGGID-------------------------------------------------- 353 (1033)
T ss_pred EEecCCCCcceeecCCcccccceeeecccc--------------------------------------------------
Confidence 9999999998888777543 345554322
Q ss_pred cccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEee
Q 036374 345 RQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILR 424 (706)
Q Consensus 345 ~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~ 424 (706)
T Consensus 354 -------------------------------------------------------------------------------- 353 (1033)
T KOG4266|consen 354 -------------------------------------------------------------------------------- 353 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeecCCCCCcccccCCCCCCCC----CCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHH
Q 036374 425 SMAIKDDAAPVVHPFSGRGPSKI----TPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAG 500 (706)
Q Consensus 425 ~~~~~~~~~~~~a~fSS~GP~~~----~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG 500 (706)
..+.++.|||||-+.. ..||+||||++-|.+|....-. .+....||||.|+|.|||
T Consensus 354 -------fdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-------------~GCr~LSGTSVaSPVVAG 413 (1033)
T KOG4266|consen 354 -------FDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-------------TGCRSLSGTSVASPVVAG 413 (1033)
T ss_pred -------ccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-------------ccchhccCCcccchhhhc
Confidence 2267999999997653 5789999999999999866542 456789999999999999
Q ss_pred HHHHHHh----hCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCC
Q 036374 501 AAAYVRS----FHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATN 552 (706)
Q Consensus 501 ~aALl~~----~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~ 552 (706)
+++||.+ +.--++|+.+|++|...|.+++. ..-+.||+|++|+.++.+
T Consensus 414 av~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg----~NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 414 AVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPG----PNMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred eeeeEeeeheehhhccCHHHHHHHHHhHHhhCCC----CchhhccCcchhHHHHHH
Confidence 9999965 34557999999999999999877 244789999999998876
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=321.46 Aligned_cols=366 Identities=19% Similarity=0.229 Sum_probs=237.4
Q ss_pred CCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC--CCHHHHHHHHHHHHHCCCcEEEEcccCCC
Q 036374 166 LGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP--CNEADILAAFDDAIADGVDIILTGATYGF 243 (706)
Q Consensus 166 ~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~ai~~gv~VIN~SlG~~~ 243 (706)
.-|||||||||+|+..+... ..|+||+|+|+.+++.+..-| .+...+.+|+..+++.++||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 56999999999999865433 389999999999999873333 56677999999999999999999999885
Q ss_pred CCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCccc---CCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCC
Q 036374 244 AFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVV---VAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFT 320 (706)
Q Consensus 244 ~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~---~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 320 (706)
..+.....++.+-..+.++|+++|+||||+||...+++. ..-.+|.|||.-......+.
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~a~------------------ 443 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQAE------------------ 443 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHHhh------------------
Confidence 444444445555545567899999999999998777654 34578888886433211100
Q ss_pred CCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEe
Q 036374 321 MKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVIL 400 (706)
Q Consensus 321 ~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i 400 (706)
|.+.
T Consensus 444 -----y~~~----------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 444 -----YSVR----------------------------------------------------------------------- 447 (1304)
T ss_pred -----hhhh-----------------------------------------------------------------------
Confidence 0000
Q ss_pred chhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCC
Q 036374 401 KMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDH 480 (706)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~ 480 (706)
......+..+|||||+. ||.+--.|.|||+.|.+--.-.
T Consensus 448 -----------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP~~t---------- 486 (1304)
T KOG1114|consen 448 -----------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVPQYT---------- 486 (1304)
T ss_pred -----------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCCchhh----------
Confidence 01124578899999999 9999999999999987642211
Q ss_pred cccceeEeccccchhHHHHHHHHHHH----hhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCCcCcc
Q 036374 481 RFVKYNILSGTSIASAFAAGAAAYVR----SFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATNPGLV 556 (706)
Q Consensus 481 ~~~~y~~~sGTSmAaP~VAG~aALl~----~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~~~lv 556 (706)
-..-..|.|||||+|+++|++|||+ +.+-.|||..||.+|++||+++.+ ..+|.+|.|+|++++|.+- |.
T Consensus 487 -lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~----id~faqG~GmlqVdkAyEy-L~ 560 (1304)
T KOG1114|consen 487 -LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGD----IDSFAQGQGMLQVDKAYEY-LA 560 (1304)
T ss_pred -hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCc----cchhccCcceeehhHHHHH-HH
Confidence 2346789999999999999999995 567899999999999999999987 4789999999999999763 11
Q ss_pred -cccChhhHHhhh-ccCCCC-cccEEEecCCCCCCCCCCCCCCCCCCC-CeEEEEeecCCCceEEEEEEEEeccCCCeeE
Q 036374 557 -YEVLEGDYIKML-CGMGYS-VNKIRLISGDNSSCPEGTSIATKDLNL-PSIAAQVEVHNPFSIKFLRTVTNVGLANTTY 632 (706)
Q Consensus 557 -~~~~~~~~~~~l-c~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lN~-psi~~~~~~~~~~~~~~~rtv~n~g~~~~ty 632 (706)
.+.....-+.|+ ...|.+ +. .++.+++..|..+. -..++. |-|.-+ ..|- .....|
T Consensus 561 q~~~~f~~~l~f~~v~VgN~~sr--GIyLRep~~~~~p~---e~~i~VePiF~~~--------------~e~~-keki~F 620 (1304)
T KOG1114|consen 561 QSDFSFPNALGFINVNVGNSCSR--GIYLREPTQVCSPS---EHTIGVEPIFENG--------------EENE-KEKISF 620 (1304)
T ss_pred HhhhcCCccceeEEEeecccccc--ceEecCCcccCCcc---ccceeccccccCc--------------cccc-cccccc
Confidence 111222223331 001111 11 11122222221100 000100 111000 0010 001112
Q ss_pred EEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEEEecccCCCceEEEEEEEEc-----CCceEEeeEEEEEecccc
Q 036374 633 KAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDGAILQANHTVSASLLWSD-----GTHNVRSPIVVYTNQEFA 704 (706)
Q Consensus 633 ~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~-----~~~~v~~P~~~~~~~~~~ 704 (706)
.+.+.- -.--.|.-.|+.|.+ .++.+.+.|+|+++....+ ..++.|.=-| .+..+|+|+.|...+..+
T Consensus 621 e~~L~L-~st~pwVq~p~~l~l--~~~~R~i~VrVDpt~l~~G-~hy~eV~gyD~~~p~~gplFrIPVTVi~P~~v~ 693 (1304)
T KOG1114|consen 621 EVQLSL-ASTQPWVQCPEYLML--ANQGRGINVRVDPTGLAPG-VHYTEVLGYDTANPSRGPLFRIPVTVIKPKVVA 693 (1304)
T ss_pred eeeEee-ecCCcceeCchhhee--ccCCceeEEEECCcCCCCC-cceEEEEEeecCCcccCceEEeeeEEEcccccc
Confidence 111111 111124445888877 6889999999999875544 4666665533 468899999987655433
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=289.16 Aligned_cols=193 Identities=17% Similarity=0.161 Sum_probs=142.9
Q ss_pred cccccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHH--HHCCCcEEEEc
Q 036374 161 TREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDA--IADGVDIILTG 238 (706)
Q Consensus 161 ~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~a--i~~gv~VIN~S 238 (706)
..|. +||||||||||||. .|++|+++|+..++.. . ....+.++++|+ .+.+++|||||
T Consensus 33 ~~~~-~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~-~---~~~~~~~~i~~~~~~~~gv~VINmS 92 (247)
T cd07488 33 NNTF-DDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI-K---SNNGQWQECLEAQQNGNNVKIINHS 92 (247)
T ss_pred CCCC-CCHHHHHHHHHHhc---------------cCCCCccceehhhhCC-C---CCCccHHHHHHHHHhcCCceEEEeC
Confidence 3466 99999999999987 5677999998755533 1 233456777787 66899999999
Q ss_pred ccCCCCCC-----ChhhHHHHHHHHHHhC-CcEEEEecCCCCCCCC-----CcccCCCceEEEccccCCcceeeeEEeCC
Q 036374 239 ATYGFAFD-----FAEDAVAIGAFHAMEK-GILTAVPTGNMGPKPA-----STVVVAPWILTVAGSSIDRPFIDKAILGD 307 (706)
Q Consensus 239 lG~~~~~~-----~~~~~~~~a~~~a~~~-Gv~vV~AAGN~G~~~~-----~~~~~~p~vitVga~~~~~~~~~~~~~~~ 307 (706)
||...... +..+.+..+++.+.++ |+++|+||||+|.... ..+..++++|+|||++.+...
T Consensus 93 ~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~-------- 164 (247)
T cd07488 93 YGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDR-------- 164 (247)
T ss_pred CccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCc--------
Confidence 99873332 2334566777776666 9999999999997531 234467889999998654210
Q ss_pred CeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCC
Q 036374 308 GTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPAST 387 (706)
Q Consensus 308 ~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~ 387 (706)
T Consensus 165 -------------------------------------------------------------------------------- 164 (247)
T cd07488 165 -------------------------------------------------------------------------------- 164 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCC--CCCCCCCCCCCCceEecCCcEEe
Q 036374 388 IMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGR--GPSKITPDIIKPDISAPAVQILA 465 (706)
Q Consensus 388 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~--GP~~~~~~~~KPDi~APG~~I~s 465 (706)
...+.||++ +|+. ++..||||+|||++|++
T Consensus 165 ----------------------------------------------~~~s~~sn~~~~~~~--~~~~~~di~APG~~i~s 196 (247)
T cd07488 165 ----------------------------------------------FFASDVSNAGSEINS--YGRRKVLIVAPGSNYNL 196 (247)
T ss_pred ----------------------------------------------ceecccccccCCCCC--CCCceeEEEEeeeeEEC
Confidence 113445554 4554 78899999999999998
Q ss_pred cccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCH------HHHHHHHHhc
Q 036374 466 AYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSP------SSIKSALMTT 524 (706)
Q Consensus 466 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp------~~ik~~L~~T 524 (706)
+ .+.|..++|||||||||||++|||++++|++.+ -++|.+|+.|
T Consensus 197 --~-------------~~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 197 --P-------------DGKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred --C-------------CCceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 2 245889999999999999999999999887764 4566666655
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.2e-31 Score=268.75 Aligned_cols=234 Identities=31% Similarity=0.406 Sum_probs=176.1
Q ss_pred cEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeecccccccC
Q 036374 104 MIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVG 183 (706)
Q Consensus 104 VvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~~ 183 (706)
|+|+|||+|++++||+|... .. ....+.++..+.. ......|. .+||||||++|++.....
T Consensus 1 v~VaiiD~G~~~~~~~~~~~---------~~-~~~~~~~~~~~~~--------~~~~~~~~-~~HGt~va~~i~~~~~~~ 61 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGL---------FG-GGDGGNDDDDNEN--------GPTDPDDG-NGHGTHVAGIIAASANNG 61 (241)
T ss_pred CEEEEEeCCCCCCCcchhcc---------cc-CcccccccccCcC--------CCCCCCCC-CCcHHHHHHHHhcCCCCC
Confidence 68999999999999987210 00 1111111111100 00233456 899999999999885322
Q ss_pred CCcccCCCcceeeccCCCeEEEEEeecCCCC-CCHHHHHHHHHHHH-HCCCcEEEEcccCCCCCCChhhHHHHHHHHHHh
Q 036374 184 ASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-CNEADILAAFDDAI-ADGVDIILTGATYGFAFDFAEDAVAIGAFHAME 261 (706)
Q Consensus 184 ~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~ai-~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~ 261 (706)
. ..|+||+++|+.+|+.. ..+ .....+++++++++ ..+++|||||||..... ....+...+..+.+
T Consensus 62 ~---------~~g~a~~a~i~~~~~~~-~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~--~~~~~~~~~~~~~~ 129 (241)
T cd00306 62 G---------GVGVAPGAKLIPVKVLD-GDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP--PSSALSEAIDYALA 129 (241)
T ss_pred C---------CEEeCCCCEEEEEEEec-CCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC--CCHHHHHHHHHHHH
Confidence 1 17999999999999998 433 67888999999999 89999999999998322 34566777777877
Q ss_pred C-CcEEEEecCCCCCCCC---CcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCC
Q 036374 262 K-GILTAVPTGNMGPKPA---STVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASY 337 (706)
Q Consensus 262 ~-Gv~vV~AAGN~G~~~~---~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~ 337 (706)
+ |+++|+|+||.+.... ..+...+++|+||+.+.+.
T Consensus 130 ~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~---------------------------------------- 169 (241)
T cd00306 130 KLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG---------------------------------------- 169 (241)
T ss_pred hcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC----------------------------------------
Confidence 7 9999999999998765 4667889999999976542
Q ss_pred CCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCC
Q 036374 338 PCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEK 417 (706)
Q Consensus 338 ~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~ 417 (706)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEeeeeeecCCCCCccc-ccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhH
Q 036374 418 PQVHILRSMAIKDDAAPVVH-PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASA 496 (706)
Q Consensus 418 ~~~~i~~~~~~~~~~~~~~a-~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP 496 (706)
... .++++|+ |||+.|||.++...... ....+..++|||||||
T Consensus 170 -----------------~~~~~~~~~~~--------~~~~~apg~~~~~~~~~-----------~~~~~~~~~GTS~Aap 213 (241)
T cd00306 170 -----------------TPASPSSNGGA--------GVDIAAPGGDILSSPTT-----------GGGGYATLSGTSMAAP 213 (241)
T ss_pred -----------------CccCCcCCCCC--------CceEEeCcCCccCcccC-----------CCCCeEeeccHHHHHH
Confidence 111 3444444 66999999999875111 1356899999999999
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 036374 497 FAAGAAAYVRSFHPDWSPSSIKSALMTT 524 (706)
Q Consensus 497 ~VAG~aALl~~~~P~lsp~~ik~~L~~T 524 (706)
+|||++||++|++|++++.++|++|+.|
T Consensus 214 ~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 214 IVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 9999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=237.10 Aligned_cols=269 Identities=25% Similarity=0.324 Sum_probs=196.4
Q ss_pred ccccC--CCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCC--cccccCCC
Q 036374 93 TVKRE--PTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINT--TREYQLGH 168 (706)
Q Consensus 93 ~~~~~--~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~--~~D~~~gH 168 (706)
..|.. +.+|+||+|+|||+||+..||+|.+.... +.+|... ... ..|. .+|
T Consensus 131 ~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~-------------~~~~~~~-----------~~~~~~~d~-~~h 185 (508)
T COG1404 131 ALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA-------------GGDFVDG-----------DPEPPFLDD-NGH 185 (508)
T ss_pred cccccccCCCCCCeEEEEeccCCCCCChhhhccccc-------------ccccccC-----------CCCCCCCCC-CCC
Confidence 67887 89999999999999999999999753211 1122111 122 3577 899
Q ss_pred cccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCC-C-CCHHHHHHHHHHHHHCC--CcEEEEcccCCCC
Q 036374 169 GTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPW-P-CNEADILAAFDDAIADG--VDIILTGATYGFA 244 (706)
Q Consensus 169 GThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~-g-~~~~~i~~ai~~ai~~g--v~VIN~SlG~~~~ 244 (706)
||||++++++.... ......|+||+++++.+|++. .. + ....+++++++++++.+ +++||||+|.. .
T Consensus 186 Gt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~-~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~-~ 256 (508)
T COG1404 186 GTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLG-SGGGSGELSDVAEGIEGAANLGGPADVINLSLGGS-L 256 (508)
T ss_pred cceeeeeeeeeccc-------CCCccccccCCCcEEEEEecc-CCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCC-c
Confidence 99999999984211 011238999999999999998 43 4 67778899999999999 99999999986 2
Q ss_pred CCChhhHHHHHHHHHHhCC-cEEEEecCCCCCCCCC----cccCC--CceEEEccccCCcceeeeEEeCCCeEEeeeecc
Q 036374 245 FDFAEDAVAIGAFHAMEKG-ILTAVPTGNMGPKPAS----TVVVA--PWILTVAGSSIDRPFIDKAILGDGTTLVGDAVN 317 (706)
Q Consensus 245 ~~~~~~~~~~a~~~a~~~G-v~vV~AAGN~G~~~~~----~~~~~--p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~ 317 (706)
.......+..++..+...| +++|+++||.+..... .+... +.+++||+.+.
T Consensus 257 ~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~---------------------- 314 (508)
T COG1404 257 SDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL---------------------- 314 (508)
T ss_pred cccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC----------------------
Confidence 3334456666777777777 9999999999876521 11211 35566655432
Q ss_pred CCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccE
Q 036374 318 PFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPT 397 (706)
Q Consensus 318 ~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~ 397 (706)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEe-----cccCCCC
Q 036374 398 VILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILA-----AYTGGWG 472 (706)
Q Consensus 398 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~s-----a~~~~~~ 472 (706)
.+.++.||++|+.. ..+++|||.+|.+ .++..
T Consensus 315 -----------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~~~~-- 351 (508)
T COG1404 315 -----------------------------------SDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGD-- 351 (508)
T ss_pred -----------------------------------CCccccccccCCCC------CcceeCCCccccccccceeeeCC--
Confidence 14578899999751 2399999999998 33321
Q ss_pred CCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccC
Q 036374 473 PSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHP-DWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKAT 551 (706)
Q Consensus 473 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al 551 (706)
...|..++|||||+|||+|++||+++.+| .+++.+++..+..++.. .. .......++.|..+...+.
T Consensus 352 ---------~~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~ 419 (508)
T COG1404 352 ---------GADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL-TP--LSGVDNLVGGGLANLDAAA 419 (508)
T ss_pred ---------ccceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc-cc--CCccccccccCcccccccc
Confidence 02499999999999999999999999999 89999999999888874 11 1234556777766665554
Q ss_pred C
Q 036374 552 N 552 (706)
Q Consensus 552 ~ 552 (706)
.
T Consensus 420 ~ 420 (508)
T COG1404 420 T 420 (508)
T ss_pred c
Confidence 4
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.5e-20 Score=185.34 Aligned_cols=171 Identities=13% Similarity=0.171 Sum_probs=112.4
Q ss_pred ccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccc
Q 036374 93 TVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHM 172 (706)
Q Consensus 93 ~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThV 172 (706)
.+|..+++|++|.+||+|.||||-|||+..+ | ..+..++|..|+..+..++. .|.-+.|||.|
T Consensus 152 ~awa~g~tgknvttaimddgvdymhpdlk~n--------y---naeasydfssndpfpypryt------ddwfnshgtrc 214 (629)
T KOG3526|consen 152 EAWALGYTGKNVTTAIMDDGVDYMHPDLKSN--------Y---NAEASYDFSSNDPFPYPRYT------DDWFNSHGTRC 214 (629)
T ss_pred HHHhhcccCCCceEEeecCCchhcCcchhcc--------c---CceeecccccCCCCCCCccc------chhhhccCccc
Confidence 8999999999999999999999999999742 2 34566777666643322221 12127899999
Q ss_pred eeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHH-CCCcEEEEcccCCCCCCChhhH
Q 036374 173 ASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIA-DGVDIILTGATYGFAFDFAEDA 251 (706)
Q Consensus 173 Agi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~-~gv~VIN~SlG~~~~~~~~~~~ 251 (706)
||-+++...++.. | .|||.+.++..+|+++ . ..-.|+++|-...-+ ...+|.+.|||........+.|
T Consensus 215 agev~aardngic--g------vgvaydskvagirmld-q--pymtdlieansmghep~kihiysaswgptddgktvdgp 283 (629)
T KOG3526|consen 215 AGEVVAARDNGIC--G------VGVAYDSKVAGIRMLD-Q--PYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGP 283 (629)
T ss_pred cceeeeeccCCce--e------eeeeeccccceeeecC-C--chhhhhhhhcccCCCCceEEEEecccCcCCCCcccCCc
Confidence 9998887655433 2 8999999999999998 2 334455554322211 3568999999987433222333
Q ss_pred ---HHHHHHHHHh-----CCcEEEEecCCCCCCCC-Ccc--cCCCceEEEc
Q 036374 252 ---VAIGAFHAME-----KGILTAVPTGNMGPKPA-STV--VVAPWILTVA 291 (706)
Q Consensus 252 ---~~~a~~~a~~-----~Gv~vV~AAGN~G~~~~-~~~--~~~p~vitVg 291 (706)
..+++.+-++ .|-++|.|+|..|.+.. ... ..+-|.|++-
T Consensus 284 rnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisin 334 (629)
T KOG3526|consen 284 RNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISIN 334 (629)
T ss_pred hhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEee
Confidence 2233333333 46799999999875432 222 2345556553
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-17 Score=176.93 Aligned_cols=102 Identities=20% Similarity=0.145 Sum_probs=81.3
Q ss_pred cceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHC---CCcEEEEcccCCCCCC--ChhhHHHHHHHHHHhCCcEE
Q 036374 192 GNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIAD---GVDIILTGATYGFAFD--FAEDAVAIGAFHAMEKGILT 266 (706)
Q Consensus 192 g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~---gv~VIN~SlG~~~~~~--~~~~~~~~a~~~a~~~Gv~v 266 (706)
..+.||||+|+|+.|++++ . ....++.++.+++.+ +++|||+|||...... .+...+..++.+|.++||+|
T Consensus 81 ~~~~gvAP~a~i~~~~~~~-~---~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitv 156 (361)
T cd04056 81 EYAGAIAPGANITLYFAPG-T---VTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITV 156 (361)
T ss_pred HHHHhccCCCeEEEEEECC-c---CccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEE
Confidence 4459999999999999987 2 245678889999887 9999999999973221 13356777778888999999
Q ss_pred EEecCCCCCCCC-----------CcccCCCceEEEccccCCc
Q 036374 267 AVPTGNMGPKPA-----------STVVVAPWILTVAGSSIDR 297 (706)
Q Consensus 267 V~AAGN~G~~~~-----------~~~~~~p~vitVga~~~~~ 297 (706)
|+|+||+|.... ..+...|||++||+++...
T Consensus 157 vaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 157 LAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999999997653 2456889999999998764
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-09 Score=91.51 Aligned_cols=78 Identities=28% Similarity=0.347 Sum_probs=57.6
Q ss_pred EEEEEecCCCCCCCCchhHHHHHHHhccCc----ccCCccEEEEecceeeEEEEEcCHHHHHHHhcCCCeeEEEcccccc
Q 036374 3 VCIVYMGSLPAGEYSPLAHHLSVLQEGIQD----SLANDVLVRSYERSFNGFAAKLTDEEQNRISRMDGIVSVFPSKTLQ 78 (706)
Q Consensus 3 ~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~~~V~~v~~~~~~~ 78 (706)
+|||.|+++.........|.+++.+.+.+. .....++.+.|+..||||+++++++++++|+++|+|++|+|++.++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 699999998663333566666665443321 3457899999999999999999999999999999999999999887
Q ss_pred cc
Q 036374 79 LQ 80 (706)
Q Consensus 79 ~~ 80 (706)
++
T Consensus 81 l~ 82 (82)
T PF05922_consen 81 LH 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 64
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-08 Score=93.48 Aligned_cols=113 Identities=32% Similarity=0.505 Sum_probs=88.0
Q ss_pred EEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeec------ccchheeec
Q 036374 303 AILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNF------RGDVETFRV 376 (706)
Q Consensus 303 ~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~------~k~~~~~~~ 376 (706)
++++|++++.|++++.... ..+++++..... .......|.+......+++||||||++. +|..+++++
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~----~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~ 75 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS----GDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAA 75 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC----CCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHc
Confidence 6789999999999997554 456777633211 2344578998888889999999999872 467788999
Q ss_pred CceEEEecC-CCC----CCCCcCccEEEechhhHHHHHHHHhcCCCcEEE
Q 036374 377 GALGSIQPA-STI----MSHPTPFPTVILKMEDFERVKLYINSTEKPQVH 421 (706)
Q Consensus 377 Ga~g~i~~~-~~~----~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~ 421 (706)
||.|+|+++ ... ......+|++.|..++++.|++|++++..++++
T Consensus 76 GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 76 GGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred CCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 999999998 322 122468999999999999999999988776654
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-08 Score=94.38 Aligned_cols=107 Identities=23% Similarity=0.276 Sum_probs=79.4
Q ss_pred CceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CCC-C----CC
Q 036374 323 GNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI-M----SH 391 (706)
Q Consensus 323 ~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~-~----~~ 391 (706)
....++++.+.. ....+...+++|||+||+| .+|..+++++||.|+|++| ... . ..
T Consensus 25 ~~~~~lv~~g~g-------------~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~ 91 (143)
T cd02133 25 GKTYELVDAGLG-------------TPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGE 91 (143)
T ss_pred CcEEEEEEccCC-------------chhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCC
Confidence 456788886533 3334445689999999997 4688999999999999999 322 1 11
Q ss_pred CcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCC
Q 036374 392 PTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSK 446 (706)
Q Consensus 392 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~ 446 (706)
...+|++.|+.++++.|.+++++ ..++++ ..+.. ..+.+.++.||||||+.
T Consensus 92 ~~~iP~v~Is~~dG~~L~~~l~~--~~~i~~-~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 92 AVFIPVVFISKEDGEALKAALES--SKKLTF-NTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred CCeEeEEEecHHHHHHHHHHHhC--CCeEEE-Eeccc-cccCCccccccCcCCCC
Confidence 24689999999999999999988 444443 33333 46778899999999964
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-06 Score=78.29 Aligned_cols=89 Identities=15% Similarity=0.216 Sum_probs=61.4
Q ss_pred EEEEeecCCCceEEEEEEEEeccCCCeeEEEEEe-ec--------------Cc--ce-EEEEEcCeEEEeeCCcEEEEEE
Q 036374 604 IAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVK-TT--------------SI--DV-KINVTPDALSFESVNDKKSFVV 665 (706)
Q Consensus 604 i~~~~~~~~~~~~~~~rtv~n~g~~~~ty~~~~~-~~--------------~~--g~-~v~v~p~~~~~~~~g~~~~~~v 665 (706)
|++.... ...+++.+|+|.|+...+|+++.. .. +. .. .+...|.+|++ ++|++++++|
T Consensus 1 i~L~d~~---~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~v 76 (112)
T PF06280_consen 1 ISLKDTG---NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTV 76 (112)
T ss_dssp EEEEEE----SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEE
T ss_pred CCccccC---CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEE
Confidence 3455663 268999999999999999999766 11 11 11 67788899999 8999999999
Q ss_pred EEEecc---cCCCceEEEEEEEEc-CCc-eEEeeEE
Q 036374 666 TVDGAI---LQANHTVSASLLWSD-GTH-NVRSPIV 696 (706)
Q Consensus 666 t~~~~~---~~~~~~~~G~i~~~~-~~~-~v~~P~~ 696 (706)
+++.+. .+...+++|+|.+++ ..+ .+++||+
T Consensus 77 ti~~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 77 TITPPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp EEE--GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred EEEehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 999955 245789999999986 344 8999996
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.9e-06 Score=97.73 Aligned_cols=163 Identities=16% Similarity=0.110 Sum_probs=88.5
Q ss_pred ccccCCCCCCCcEEEEEc-cccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCccc
Q 036374 93 TVKREPTVESDMIIGVLD-NGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTH 171 (706)
Q Consensus 93 ~~~~~~~~G~GVvVgVID-tGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGTh 171 (706)
.+++.+.+|+|+.||||| -|-.+..-|+.- -|+. .|-....+.++. + .+ -. .+|+||
T Consensus 219 ~l~~~g~tGkG~tIaIid~yG~p~~~~dl~~--------Fd~~----~Gip~~~~~~V~----~----ig-~g-~~~~~~ 276 (1174)
T COG4934 219 ALYESGATGKGETIAIIDAYGDPYNNQDLYS--------FDQQ----YGIPNPILSRVT----Y----IG-PG-IGSGTG 276 (1174)
T ss_pred ecccCCCCCCCcEEEEEeccCCcccHHHHHH--------HHHh----hCCCCCCceEEE----E----eC-CC-CCCCCC
Confidence 456668899999999999 665544444321 1111 110001111111 0 00 11 578887
Q ss_pred ceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCC-cEEEEcccCC--CCCCC-
Q 036374 172 MASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGV-DIILTGATYG--FAFDF- 247 (706)
Q Consensus 172 VAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv-~VIN~SlG~~--~~~~~- 247 (706)
=+.-+ -++..-..-+||+|+|..+-.-. .....+..|+.+-...=+ -+|-.||+.. ....+
T Consensus 277 g~~E~-----------sLDVE~s~A~AP~A~I~lvvap~----~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~ 341 (1174)
T COG4934 277 GAEET-----------SLDVEWSHAMAPKANIDLVVAPN----PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISP 341 (1174)
T ss_pred ccccc-----------eeehhhhhccCccCceEEEEcCC----CceehhhHHHHHHHHhhhcccccchhHHHHhccCCCh
Confidence 66411 12333347799999999886522 122222233322221111 3333566543 12222
Q ss_pred -hhhHHHHHHHHHHhCCcEEEEecCCCCCCCCC--------cccCCCceEEEcc
Q 036374 248 -AEDAVAIGAFHAMEKGILTAVPTGNMGPKPAS--------TVVVAPWILTVAG 292 (706)
Q Consensus 248 -~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~--------~~~~~p~vitVga 292 (706)
.-+.+......|.++|+.+++|+|.+|....+ .++.+|++++||.
T Consensus 342 ~~~~~~d~l~~qasaeGITi~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 342 GYADLMDLLYEQASAEGITIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred HHHHHHHHHHHHhhccceEEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 23344555556778999999999999866532 3457899999998
|
|
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.4e-06 Score=91.20 Aligned_cols=160 Identities=14% Similarity=0.065 Sum_probs=96.6
Q ss_pred cCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCC
Q 036374 88 MGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLG 167 (706)
Q Consensus 88 ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~g 167 (706)
+.+. .+|..+++|.++.|+|.|+|++..||+..+. +.+. ..+++..+.. ....-.+.... ..
T Consensus 20 ~~v~-~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-~~~~----------~s~d~~~~~~-----~p~~~~~~~~~-~~ 81 (431)
T KOG3525|consen 20 LNVQ-NAWCKGYTGTRVSVTILDDGLECSHPDLRNN-YDPL----------GSYDVNRHDN-----DPEPRCDGTNE-NK 81 (431)
T ss_pred ceee-eccccCCCCCceEEEEeeccccccCcccccc-cCcc----------eeEeeecCCC-----CcccccCCCCc-cc
Confidence 4455 8999999999999999999999999999742 2211 1111111110 00001122234 78
Q ss_pred CcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHH-CCCcEEEEcccCCCCCC
Q 036374 168 HGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIA-DGVDIILTGATYGFAFD 246 (706)
Q Consensus 168 HGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~-~gv~VIN~SlG~~~~~~ 246 (706)
|||-||+-.+....... -..|+++++++..++++. +...+...+...... .-.++-..|||......
T Consensus 82 ~g~~Ca~~~a~~~~~~~--------C~vg~~~~~~~~g~~~l~----~~v~~~~~~~~~~~~~~~~di~scsw~pddd~~ 149 (431)
T KOG3525|consen 82 HGTRCAGCVAARANNLT--------CGVGVAYNATIGGIRMLA----GCVSDAVEAPSLGFGPCHIDIYSCSWGPDDDGK 149 (431)
T ss_pred cCCCCCcccccccCCCc--------CCCCcccCccccceeeee----eecccceecccccCCCCCceeecCcCCcccCCC
Confidence 99999999998852211 228999999999999987 112222222222222 34688888999763221
Q ss_pred Chhh---HHHHHHHHH-----HhCCcEEEEecCCCCCCC
Q 036374 247 FAED---AVAIGAFHA-----MEKGILTAVPTGNMGPKP 277 (706)
Q Consensus 247 ~~~~---~~~~a~~~a-----~~~Gv~vV~AAGN~G~~~ 277 (706)
.... ....+...+ ..+|-+.|++.||.|...
T Consensus 150 t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 150 TCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred cCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 1111 122233332 246889999999987654
|
|
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.2e-05 Score=73.35 Aligned_cols=78 Identities=18% Similarity=0.156 Sum_probs=63.9
Q ss_pred ccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CCC------CC---CCcCccEEEechhhHHHH
Q 036374 344 SRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI------MS---HPTPFPTVILKMEDFERV 408 (706)
Q Consensus 344 ~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~------~~---~~~~~p~~~i~~~~~~~l 408 (706)
...|.+..+...+++|||+||+| .+|..+++++||.++|++| ... .. ....+|+++|+.++++.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 47898887777899999999998 4688999999999999999 321 11 234689999999999999
Q ss_pred HHHHhcCCCcEEE
Q 036374 409 KLYINSTEKPQVH 421 (706)
Q Consensus 409 ~~~~~~~~~~~~~ 421 (706)
.+++..+.+.+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999888765554
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.2e-05 Score=71.76 Aligned_cols=80 Identities=8% Similarity=-0.130 Sum_probs=65.5
Q ss_pred cccccCCCCC--CCCcccccEEEEee-----cccchheeecCceEEEecC-CC-C-----C--CCCcCccEEEechhhHH
Q 036374 343 ASRQCSLFCL--DENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-ST-I-----M--SHPTPFPTVILKMEDFE 406 (706)
Q Consensus 343 ~~~~c~~~~~--~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~-~-----~--~~~~~~p~~~i~~~~~~ 406 (706)
....|.+... ...++.|+|+|++| .+|..+++++||.++|+|| .+ . + .....+|+++|+..+|+
T Consensus 43 ~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~ 122 (138)
T cd02122 43 DHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGM 122 (138)
T ss_pred CcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHH
Confidence 4578988776 56789999999999 4889999999999999999 33 1 1 12346899999999999
Q ss_pred HHHHHHhcCCCcEEEE
Q 036374 407 RVKLYINSTEKPQVHI 422 (706)
Q Consensus 407 ~l~~~~~~~~~~~~~i 422 (706)
.|+..+..+.+.+++|
T Consensus 123 ~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 123 EILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHcCCcEEEeC
Confidence 9999999888777654
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=97.82 E-value=9.4e-05 Score=67.41 Aligned_cols=76 Identities=17% Similarity=0.089 Sum_probs=60.9
Q ss_pred cccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-C-CC-C------CCCcCccEEEechhhHHHHHH
Q 036374 345 RQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-S-TI-M------SHPTPFPTVILKMEDFERVKL 410 (706)
Q Consensus 345 ~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~-~~-~------~~~~~~p~~~i~~~~~~~l~~ 410 (706)
..|.+..+ +.+++|||+|++| .+|..+++++||.++|+|| . .. . .+...+|++.|+.++++.|+.
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 46776444 3579999999998 4789999999999999999 3 22 1 123568999999999999999
Q ss_pred HHhcCCCcEEE
Q 036374 411 YINSTEKPQVH 421 (706)
Q Consensus 411 ~~~~~~~~~~~ 421 (706)
.+..+.+.+++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99988876664
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.6e-05 Score=69.68 Aligned_cols=79 Identities=19% Similarity=0.244 Sum_probs=62.5
Q ss_pred ccccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CC-C--C-----CCCcCccEEEechhhHHH
Q 036374 342 LASRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-ST-I--M-----SHPTPFPTVILKMEDFER 407 (706)
Q Consensus 342 ~~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~-~--~-----~~~~~~p~~~i~~~~~~~ 407 (706)
.....|.+.... .+++|||+||+| .+|..+++++||.|+|+++ .. . . .....+|+++|+.+++..
T Consensus 25 ~~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 25 SNTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred CcccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 345679887764 459999999987 3688899999999999998 22 1 1 123569999999999999
Q ss_pred HHHHHhcCCCcEEE
Q 036374 408 VKLYINSTEKPQVH 421 (706)
Q Consensus 408 l~~~~~~~~~~~~~ 421 (706)
|+.|++.+...+++
T Consensus 104 l~~~l~~g~~v~v~ 117 (118)
T cd04818 104 LKAALAAGGTVTVT 117 (118)
T ss_pred HHHHHhcCCcEEEe
Confidence 99999987766554
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=97.79 E-value=1.8e-05 Score=69.33 Aligned_cols=70 Identities=27% Similarity=0.319 Sum_probs=57.3
Q ss_pred cccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CC--------CCCCCcCccEEEechhhHHHH
Q 036374 343 ASRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-ST--------IMSHPTPFPTVILKMEDFERV 408 (706)
Q Consensus 343 ~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~--------~~~~~~~~p~~~i~~~~~~~l 408 (706)
....|.+......+++||||||+| .+|..+++++||.|+|++| .. .......+|+++|+.++++.|
T Consensus 18 ~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L 97 (101)
T PF02225_consen 18 DEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEAL 97 (101)
T ss_dssp ECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHH
T ss_pred CcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhh
Confidence 345677788888999999999998 4789999999999999999 11 134567899999999999999
Q ss_pred HHHH
Q 036374 409 KLYI 412 (706)
Q Consensus 409 ~~~~ 412 (706)
++|+
T Consensus 98 ~~~i 101 (101)
T PF02225_consen 98 LAYI 101 (101)
T ss_dssp HHHH
T ss_pred hccC
Confidence 9985
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00012 Score=67.17 Aligned_cols=79 Identities=16% Similarity=0.058 Sum_probs=61.2
Q ss_pred ccccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CCC-----CCCCcCccEEEechhhHHHHHH
Q 036374 342 LASRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI-----MSHPTPFPTVILKMEDFERVKL 410 (706)
Q Consensus 342 ~~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~-----~~~~~~~p~~~i~~~~~~~l~~ 410 (706)
....+|.+.+.+..+++|||+|++| .+|..+++++||.++|+|| .+. ..+...+|.+.+ .++|+.|++
T Consensus 39 ~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 39 VADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred CCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 4557899876666689999999999 4889999999999999998 322 123334565666 999999999
Q ss_pred HHhcCCCcEEE
Q 036374 411 YINSTEKPQVH 421 (706)
Q Consensus 411 ~~~~~~~~~~~ 421 (706)
.+..+...+++
T Consensus 118 ~l~~G~~vtv~ 128 (129)
T cd02124 118 ALAAGSNVTVD 128 (129)
T ss_pred HHhcCCeEEEe
Confidence 99887665554
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=97.74 E-value=5.3e-05 Score=69.16 Aligned_cols=79 Identities=22% Similarity=0.154 Sum_probs=62.7
Q ss_pred cccccCCCC--CCCCcccccEEEEee-----cccchheeecCceEEEecC-CC---CC-------CCCcCccEEEechhh
Q 036374 343 ASRQCSLFC--LDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-ST---IM-------SHPTPFPTVILKMED 404 (706)
Q Consensus 343 ~~~~c~~~~--~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~---~~-------~~~~~~p~~~i~~~~ 404 (706)
....|.+.. +...+++|||+||++ .+|..+++++||.|+|+++ .. .. .....+|++.|+.++
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 446687766 667889999999987 3688999999999999998 22 11 134579999999999
Q ss_pred HHHHHHHHhcCCCcEEE
Q 036374 405 FERVKLYINSTEKPQVH 421 (706)
Q Consensus 405 ~~~l~~~~~~~~~~~~~ 421 (706)
+..|..++.++.+.+++
T Consensus 109 g~~l~~~~~~~~~v~~~ 125 (126)
T cd00538 109 GEALLSLLEAGKTVTVD 125 (126)
T ss_pred HHHHHHHHhcCCceEEe
Confidence 99999999887665543
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=97.68 E-value=9.5e-05 Score=66.72 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=62.8
Q ss_pred ccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CCC-----C-------CCCcCccEEEechhhH
Q 036374 344 SRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI-----M-------SHPTPFPTVILKMEDF 405 (706)
Q Consensus 344 ~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~-----~-------~~~~~~p~~~i~~~~~ 405 (706)
...|.+.. ...+++|+|+|++| .+|..+++++||.++|+|| ... + .....+|+++|+..+|
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 46798643 35679999999999 5889999999999999999 221 1 1234789999999999
Q ss_pred HHHHHHHhcCCCcEEEE
Q 036374 406 ERVKLYINSTEKPQVHI 422 (706)
Q Consensus 406 ~~l~~~~~~~~~~~~~i 422 (706)
+.|+..+..+..+++.|
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999888776654
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=9.5e-05 Score=67.68 Aligned_cols=76 Identities=24% Similarity=0.317 Sum_probs=60.5
Q ss_pred ccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CCC-------C---------CCCcCccEEEec
Q 036374 344 SRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI-------M---------SHPTPFPTVILK 401 (706)
Q Consensus 344 ~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~-------~---------~~~~~~p~~~i~ 401 (706)
...|.+... ..+++|||+|++| .+|..+++++||.++|++| .++ . .+...+|+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467986543 5578999999999 5889999999999999997 221 0 124578999999
Q ss_pred hhhHHHHHHHHhcCCCcEE
Q 036374 402 MEDFERVKLYINSTEKPQV 420 (706)
Q Consensus 402 ~~~~~~l~~~~~~~~~~~~ 420 (706)
..+|+.|+..+......++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999987765554
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=97.60 E-value=9.9e-05 Score=66.34 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=61.1
Q ss_pred ccccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CCC--C------CCCcCccEEEechhhHHH
Q 036374 342 LASRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI--M------SHPTPFPTVILKMEDFER 407 (706)
Q Consensus 342 ~~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~--~------~~~~~~p~~~i~~~~~~~ 407 (706)
+...+|.+......+++|||+|++| .+|..+++++||.++|++| ... . .....+|+++|+.++|+.
T Consensus 28 ~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~ 107 (120)
T cd02129 28 TSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLD 107 (120)
T ss_pred CCcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHH
Confidence 3457899888877889999999999 5899999999999999999 321 1 134568999999999999
Q ss_pred HHHHHhcC
Q 036374 408 VKLYINST 415 (706)
Q Consensus 408 l~~~~~~~ 415 (706)
|.+.+...
T Consensus 108 i~~~l~~~ 115 (120)
T cd02129 108 IQQTFGDS 115 (120)
T ss_pred HHHHhccC
Confidence 99988743
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00022 Score=66.40 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=60.1
Q ss_pred ccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CCC---CC-------CCcCccEEEechhhHHH
Q 036374 344 SRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI---MS-------HPTPFPTVILKMEDFER 407 (706)
Q Consensus 344 ~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~---~~-------~~~~~p~~~i~~~~~~~ 407 (706)
.+.|.+.. .+++|||+|++| .+|..+++++||.++|+|| .+. +. ....+|+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798764 378999999999 5899999999999999998 321 10 13578999999999999
Q ss_pred HHHHHhcCCCcEE
Q 036374 408 VKLYINSTEKPQV 420 (706)
Q Consensus 408 l~~~~~~~~~~~~ 420 (706)
|+..+..+...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999988776554
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00028 Score=63.59 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=57.7
Q ss_pred ccccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CCC-----C-----CCCcCccEEEechhhH
Q 036374 342 LASRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI-----M-----SHPTPFPTVILKMEDF 405 (706)
Q Consensus 342 ~~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~-----~-----~~~~~~p~~~i~~~~~ 405 (706)
.....|.+. +..+++|||+|++| .+|..+++++||.++|++| ... + .....+|+++++.+++
T Consensus 25 ~p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 25 SPTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 445789766 56889999999999 5899999999999999998 221 1 2234789999999999
Q ss_pred HHHHHHHhcC
Q 036374 406 ERVKLYINST 415 (706)
Q Consensus 406 ~~l~~~~~~~ 415 (706)
++|..++...
T Consensus 103 ~~L~~l~~~~ 112 (117)
T cd04813 103 HLLSSLLPKS 112 (117)
T ss_pred HHHHHhcccc
Confidence 9999887643
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00037 Score=63.75 Aligned_cols=78 Identities=17% Similarity=0.146 Sum_probs=60.7
Q ss_pred ccccCCCCCC--CC----cccccEEEEee-----cccchheeecCceEEEecC-CCC--C-------------CCCcCcc
Q 036374 344 SRQCSLFCLD--EN----LVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI--M-------------SHPTPFP 396 (706)
Q Consensus 344 ~~~c~~~~~~--~~----~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~--~-------------~~~~~~p 396 (706)
.+.|.+.... +. ...++|+|++| .+|..+++++||.++|++| .+. . .....+|
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4678875442 22 37889999999 4899999999999999999 322 1 1123589
Q ss_pred EEEechhhHHHHHHHHhcCCCcEEE
Q 036374 397 TVILKMEDFERVKLYINSTEKPQVH 421 (706)
Q Consensus 397 ~~~i~~~~~~~l~~~~~~~~~~~~~ 421 (706)
+++|+.++++.|+..+..+...+++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999999999988776654
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0019 Score=59.23 Aligned_cols=80 Identities=16% Similarity=0.086 Sum_probs=59.6
Q ss_pred ceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeec-------ccchheeecCceEEEecC-CCC-C-----
Q 036374 324 NKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNF-------RGDVETFRVGALGSIQPA-STI-M----- 389 (706)
Q Consensus 324 ~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~-------~k~~~~~~~Ga~g~i~~~-~~~-~----- 389 (706)
...++++.+... +..+...+++|||+++++. +|..+++++||.|+|++| ..+ .
T Consensus 23 ~~~~lV~~g~G~-------------~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~ 89 (127)
T cd04819 23 AKGEPVDAGYGL-------------PKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGD 89 (127)
T ss_pred eeEEEEEeCCCC-------------HHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCccccc
Confidence 456788765432 1122355799999999982 468899999999999998 222 1
Q ss_pred -----CCCcCccEEEechhhHHHHHHHHhcCC
Q 036374 390 -----SHPTPFPTVILKMEDFERVKLYINSTE 416 (706)
Q Consensus 390 -----~~~~~~p~~~i~~~~~~~l~~~~~~~~ 416 (706)
.....+|++.|+.+|++.|...++.+.
T Consensus 90 ~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 90 EGTEDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred ccccCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 123579999999999999999998754
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00066 Score=62.81 Aligned_cols=63 Identities=17% Similarity=0.129 Sum_probs=51.0
Q ss_pred CCCcccccEEEEeec----------ccchheeecCceEEEecC-C--CCC-----CC---CcCccEEEechhhHHHHHHH
Q 036374 353 DENLVKGKILLCDNF----------RGDVETFRVGALGSIQPA-S--TIM-----SH---PTPFPTVILKMEDFERVKLY 411 (706)
Q Consensus 353 ~~~~~~gkivl~~~~----------~k~~~~~~~Ga~g~i~~~-~--~~~-----~~---~~~~p~~~i~~~~~~~l~~~ 411 (706)
...+++|||+|++|. +|..+++++||.|+|+|| . ++. .+ ...+|+++|++++++.|+..
T Consensus 51 ~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~~ 130 (139)
T cd04817 51 ICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLAA 130 (139)
T ss_pred cCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHHH
Confidence 345789999999982 568899999999999999 3 331 11 45799999999999999998
Q ss_pred HhcC
Q 036374 412 INST 415 (706)
Q Consensus 412 ~~~~ 415 (706)
+...
T Consensus 131 l~~~ 134 (139)
T cd04817 131 LGQS 134 (139)
T ss_pred hcCC
Confidence 8543
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00095 Score=63.26 Aligned_cols=74 Identities=19% Similarity=0.120 Sum_probs=60.4
Q ss_pred ccccCCCCCCC---CcccccEEEEee-----cccchheeecCceEEEecC-CCC----C----C--CCcCccEEEechhh
Q 036374 344 SRQCSLFCLDE---NLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI----M----S--HPTPFPTVILKMED 404 (706)
Q Consensus 344 ~~~c~~~~~~~---~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~----~----~--~~~~~p~~~i~~~~ 404 (706)
.++|.+....+ ....|+|+|++| .+|..+++++||.++|++| ... + . ....+|+++|+.++
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 56898766533 789999999999 5899999999999999999 222 1 1 14579999999999
Q ss_pred HHHHHHHHhcCCC
Q 036374 405 FERVKLYINSTEK 417 (706)
Q Consensus 405 ~~~l~~~~~~~~~ 417 (706)
++.|..++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987655
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.12 Score=45.05 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=60.7
Q ss_pred eEEEEEEEEeccCCCeeEEEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEEEecccCCCceEEEEEEEEcCCceEEee
Q 036374 615 SIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDGAILQANHTVSASLLWSDGTHNVRSP 694 (706)
Q Consensus 615 ~~~~~rtv~n~g~~~~ty~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~~~~~v~~P 694 (706)
..+.+.+|+|.|..+..|++.... ...-.++++|..-.+ .+|++.+++|++.... ..+.+.+.|.....+..+.+|
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~-~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~--~~g~~~~~l~i~~e~~~~~i~ 96 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPE-SLSSFFSVEPPSGFL-APGESVELEVTFSPTK--PLGDYEGSLVITTEGGSFEIP 96 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCC-cCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC--CCceEEEEEEEEECCeEEEEE
Confidence 667778899999999999987543 234557777777667 8999999999999543 234588999887666678888
Q ss_pred EEEE
Q 036374 695 IVVY 698 (706)
Q Consensus 695 ~~~~ 698 (706)
+-+.
T Consensus 97 v~a~ 100 (102)
T PF14874_consen 97 VKAE 100 (102)
T ss_pred EEEE
Confidence 7664
|
|
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.03 Score=51.78 Aligned_cols=68 Identities=22% Similarity=0.280 Sum_probs=52.8
Q ss_pred CCcccccEEEEeeccc------------------chheeecCceEEEecC-CCC--------C----CCCcCccEEEech
Q 036374 354 ENLVKGKILLCDNFRG------------------DVETFRVGALGSIQPA-STI--------M----SHPTPFPTVILKM 402 (706)
Q Consensus 354 ~~~~~gkivl~~~~~k------------------~~~~~~~Ga~g~i~~~-~~~--------~----~~~~~~p~~~i~~ 402 (706)
..+++|||+++.+... ...++++||.++|++| .+. . .....+|++.|+.
T Consensus 35 ~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~ 114 (134)
T cd04815 35 AGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISV 114 (134)
T ss_pred hhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEech
Confidence 5689999999987333 5888999999999998 211 1 1235699999999
Q ss_pred hhHHHHHHHHhcCCCcEEE
Q 036374 403 EDFERVKLYINSTEKPQVH 421 (706)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~ 421 (706)
+|+..|...+..+...+++
T Consensus 115 ed~~~L~r~l~~g~~v~~~ 133 (134)
T cd04815 115 EDADMLERLAARGKPIRVN 133 (134)
T ss_pred hcHHHHHHHHhCCCCeEEe
Confidence 9999999999887655543
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.24 Score=41.02 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=37.4
Q ss_pred ceEEEEEEEEeccCCC-eeEEEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEEEecc
Q 036374 614 FSIKFLRTVTNVGLAN-TTYKAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDGAI 671 (706)
Q Consensus 614 ~~~~~~rtv~n~g~~~-~ty~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 671 (706)
...+++.+|+|.|..+ ...++++.. |.|-++...|.++.--++|++++++++|+++.
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~-P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSL-PEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE---TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeC-CCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 4788999999999754 567888888 99999888888875338999999999999875
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.56 Score=42.21 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=41.0
Q ss_pred eEEEEEEEEeccCCCeeEEEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEEEecccC
Q 036374 615 SIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDGAILQ 673 (706)
Q Consensus 615 ~~~~~rtv~n~g~~~~ty~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~ 673 (706)
.-.++..++|.+..+.+|++++.. ++|+++......+++ ++|++.++.|.|..+...
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g-~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEG-LPGAELQGPENTITV-PPGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES--SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEECCCCCEEEEEEEec-CCCeEEECCCcceEE-CCCCEEEEEEEEEECHHH
Confidence 456888999999999999999999 889999665588999 899999999999987643
|
|
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.11 Score=50.36 Aligned_cols=61 Identities=11% Similarity=0.155 Sum_probs=48.2
Q ss_pred CCcccccEEEEee-----cccchheeecCceEEEecCC--CC--C-------------------------C---------
Q 036374 354 ENLVKGKILLCDN-----FRGDVETFRVGALGSIQPAS--TI--M-------------------------S--------- 390 (706)
Q Consensus 354 ~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~~--~~--~-------------------------~--------- 390 (706)
..+++|||+|+++ .+|..+++++||.|+|+|++ +. . .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 4578999999998 57899999999999999982 10 0 0
Q ss_pred -CCcCccEEEechhhHHHHHHHHhc
Q 036374 391 -HPTPFPTVILKMEDFERVKLYINS 414 (706)
Q Consensus 391 -~~~~~p~~~i~~~~~~~l~~~~~~ 414 (706)
.--.+|+.-|+.++++.|++.+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 012488999999999999998854
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.28 Score=46.18 Aligned_cols=80 Identities=14% Similarity=0.041 Sum_probs=52.3
Q ss_pred eeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeec-----------------------ccchheeecCceEE
Q 036374 325 KFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNF-----------------------RGDVETFRVGALGS 381 (706)
Q Consensus 325 ~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~-----------------------~k~~~~~~~Ga~g~ 381 (706)
.-++|+.+... ....|........+++|||||+.+. .|..+++..||.|+
T Consensus 21 tg~lVfvGyGi-------~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aV 93 (151)
T cd04822 21 TAPVVFAGYGI-------TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAV 93 (151)
T ss_pred eEeEEEecCCc-------CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEE
Confidence 45777766432 1345665666678999999999753 36788899999999
Q ss_pred EecCC--CCCCCCcC------ccEEEechhhHHHHHHH
Q 036374 382 IQPAS--TIMSHPTP------FPTVILKMEDFERVKLY 411 (706)
Q Consensus 382 i~~~~--~~~~~~~~------~p~~~i~~~~~~~l~~~ 411 (706)
|++++ ........ -..++++....+.+...
T Consensus 94 Iv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 94 IVVNGPNSHSGDADRLPRFGGTAPQRVDIAAADPWFTA 131 (151)
T ss_pred EEEeCCcccCcccccccccCccceEEechHHHHHHhhh
Confidence 99992 21111111 22566777666666554
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.17 Score=46.82 Aligned_cols=54 Identities=20% Similarity=0.126 Sum_probs=41.5
Q ss_pred eeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeec-----------------ccchheeecCceEEEecC
Q 036374 325 KFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNF-----------------RGDVETFRVGALGSIQPA 385 (706)
Q Consensus 325 ~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~-----------------~k~~~~~~~Ga~g~i~~~ 385 (706)
.-++|+.+.... ...|....+...+++|||||+.+. .|..++++.||.|+|+++
T Consensus 23 ~gelVfvGyG~~-------~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~ 93 (137)
T cd04820 23 EAPLVFVGYGLV-------APELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLT 93 (137)
T ss_pred eEeEEEecCCcC-------ccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEe
Confidence 456777654321 345766666778999999999972 378899999999999998
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=90.75 E-value=0.31 Score=45.32 Aligned_cols=55 Identities=22% Similarity=0.119 Sum_probs=42.3
Q ss_pred ceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeec-----------------------ccchheeecCceE
Q 036374 324 NKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNF-----------------------RGDVETFRVGALG 380 (706)
Q Consensus 324 ~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~-----------------------~k~~~~~~~Ga~g 380 (706)
...++|+.+.... ...|....+...+++||||++.+. .|...++++||.|
T Consensus 20 ~~aelVfvGyGi~-------a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~g 92 (142)
T cd04814 20 KDAPLVFVGYGIK-------APELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAG 92 (142)
T ss_pred cceeeEEecCCcC-------CCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcE
Confidence 4567887764422 345777777788999999999652 3778899999999
Q ss_pred EEecC
Q 036374 381 SIQPA 385 (706)
Q Consensus 381 ~i~~~ 385 (706)
+|+++
T Consensus 93 vIii~ 97 (142)
T cd04814 93 VLIVH 97 (142)
T ss_pred EEEEe
Confidence 99999
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.72 Score=50.38 Aligned_cols=77 Identities=14% Similarity=0.162 Sum_probs=60.5
Q ss_pred cccccCCCCCCCCcccccEEEEee-----cccchheeecCceEEEecC-CCC----------CCCCcCccEEEechhhHH
Q 036374 343 ASRQCSLFCLDENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI----------MSHPTPFPTVILKMEDFE 406 (706)
Q Consensus 343 ~~~~c~~~~~~~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~----------~~~~~~~p~~~i~~~~~~ 406 (706)
+.+.|.+. ....++|+++..| .+|...++++||.++++.| ..+ ...+..+|++++.+++++
T Consensus 83 pld~cs~~---~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~ 159 (541)
T KOG2442|consen 83 PLDSCSTL---QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGR 159 (541)
T ss_pred CccccCCC---CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHH
Confidence 34455533 3568899999999 5899999999999999999 221 233577999999999999
Q ss_pred HHHHHHhcCCCcEEEE
Q 036374 407 RVKLYINSTEKPQVHI 422 (706)
Q Consensus 407 ~l~~~~~~~~~~~~~i 422 (706)
.+.....++.+.++.+
T Consensus 160 ~l~~~~~~~~~V~~~l 175 (541)
T KOG2442|consen 160 DLNKSTRSNDNVELAL 175 (541)
T ss_pred HHHhhhccCCeEEEEE
Confidence 9998777777766666
|
|
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=89.69 E-value=11 Score=34.14 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=56.1
Q ss_pred CeEEEEeecCCCceEEEEEEEEeccCCCeeEEEEEeec---Ccc--------------eE------EEEEcCeEEEeeCC
Q 036374 602 PSIAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKTT---SID--------------VK------INVTPDALSFESVN 658 (706)
Q Consensus 602 psi~~~~~~~~~~~~~~~rtv~n~g~~~~ty~~~~~~~---~~g--------------~~------v~v~p~~~~~~~~g 658 (706)
..|-+....+ ...+++.+|+|.++...+|.+.+... ..| +. +++ |..+++ +++
T Consensus 17 ~YFdL~~~P~--q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~ 92 (121)
T PF06030_consen 17 SYFDLKVKPG--QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPN 92 (121)
T ss_pred CeEEEEeCCC--CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCC
Confidence 3455544444 48899999999999999999875432 111 00 111 445888 899
Q ss_pred cEEEEEEEEEecccCCCceEEEEEEEE
Q 036374 659 DKKSFVVTVDGAILQANHTVSASLLWS 685 (706)
Q Consensus 659 ~~~~~~vt~~~~~~~~~~~~~G~i~~~ 685 (706)
++++++++++.+...-.+.+-|.|.++
T Consensus 93 ~sk~V~~~i~~P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 93 ESKTVTFTIKMPKKAFDGIILGGIYFS 119 (121)
T ss_pred CEEEEEEEEEcCCCCcCCEEEeeEEEE
Confidence 999999999988765566778878775
|
|
| >PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors | Back alignment and domain information |
|---|
Probab=86.68 E-value=16 Score=32.85 Aligned_cols=69 Identities=16% Similarity=0.069 Sum_probs=46.7
Q ss_pred eEEEEEEEEeccCCCeeEEEEEeec---C---cceEEEEEcCeEEEeeCCcEEEEEEEEEecccCCCceEEEEEEEE
Q 036374 615 SIKFLRTVTNVGLANTTYKAEVKTT---S---IDVKINVTPDALSFESVNDKKSFVVTVDGAILQANHTVSASLLWS 685 (706)
Q Consensus 615 ~~~~~rtv~n~g~~~~ty~~~~~~~---~---~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~ 685 (706)
..+.+.+|+|.|+.+..+.+.+... + +.-.+.++|..+.+ ++|+++.+.| +.....+......=+|.++
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 4566788999998777777766641 1 11257789999999 8999999999 7654434444444455554
|
Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B .... |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=82.93 E-value=0.67 Score=43.27 Aligned_cols=31 Identities=16% Similarity=-0.069 Sum_probs=28.8
Q ss_pred CcccccEEEEee-----cccchheeecCceEEEecC
Q 036374 355 NLVKGKILLCDN-----FRGDVETFRVGALGSIQPA 385 (706)
Q Consensus 355 ~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~ 385 (706)
-+++|||+|++. ..|+.+++..||.|+|||.
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYs 72 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYV 72 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEec
Confidence 679999999996 6899999999999999998
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.00 E-value=1 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=22.0
Q ss_pred CCCCCCcEEEEEccccCCCCcCCC
Q 036374 98 PTVESDMIIGVLDNGIWPESDMFD 121 (706)
Q Consensus 98 ~~~G~GVvVgVIDtGid~~Hp~f~ 121 (706)
.+.|+||+|||+|||||+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 689999999999999999888775
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 706 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-135 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 1e-80 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 1e-04 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 4e-04 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 7e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 601 bits (1550), Expect = 0.0
Identities = 283/630 (44%), Positives = 379/630 (60%), Gaps = 22/630 (3%)
Query: 81 TTRSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGG 140
TTRSWDF+GFP TV R VES++++GVLD GIWPES FDD+ F PPP KWKG C+
Sbjct: 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGT-CETS 59
Query: 141 QNFTCNNKIIGARYYSG--------INTTREYQLGHGTHMASIAAGNLVVGASFDGLAKG 192
NF CN KIIGAR Y +N R+ GHGTH AS AAG LV A+ GL G
Sbjct: 60 NNFRCNRKIIGARSYHIGRPISPGDVNGPRDTN-GHGTHTASTAAGGLVSQANLYGLGLG 118
Query: 193 NVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAV 252
RG VP ARIAAY+VC + C++ DILAA+DDAIADGVDII + DA+
Sbjct: 119 TARGGVPLARIAAYKVC-WNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAI 177
Query: 253 AIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLV 312
AIG+FHA+E+GILT+ GN GP +T ++PW+L+VA S++DR F+ + +G+G +
Sbjct: 178 AIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQ 237
Query: 313 GDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVE 372
G ++N F +PL G+ + + SR C+ ++ NL+KGKI++C+ G E
Sbjct: 238 GVSINTF--DNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHE 295
Query: 373 TFRV--GALGSI-QPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIK 429
F+ GA G + + + P P+ +L D YI S P I +S I
Sbjct: 296 FFKSLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTIL 355
Query: 430 DDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILS 489
+ +APVV FS RGP++ T D+IKPDIS P V+ILAA+ R +NI+S
Sbjct: 356 NASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVGG---IRRNTLFNIIS 412
Query: 490 GTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVK 549
GTS++ G A YV++++P WSP++IKSALMTTA MN N EF YGSGH++P+K
Sbjct: 413 GTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSGHVNPLK 472
Query: 550 ATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNSSCPEGTSIATKDLNLPSIAAQVE 609
A PGLVY+ E DY+K LCG GY+ +R I+GD S+C G + DLN PS V
Sbjct: 473 AVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVS 532
Query: 610 VHNPFSIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDG 669
F+ F RT+T+V +TY+A + + I+V P+ LSF + D+KSF +TV G
Sbjct: 533 PSQTFNQYFNRTLTSVAPQASTYRAMISAPQ-GLTISVNPNVLSFNGLGDRKSFTLTVRG 591
Query: 670 AILQANHTVSASLLWSDGTHNVRSPIVVYT 699
+I VSASL+WSDG H VRSPI + +
Sbjct: 592 SI--KGFVVSASLVWSDGVHYVRSPITITS 619
|
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 544 bits (1403), Expect = 0.0
Identities = 222/658 (33%), Positives = 324/658 (49%), Gaps = 53/658 (8%)
Query: 81 TTRSWDFMGFPET--VKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACK 138
TT + DF+ + + + D+I+ VLD+GIWPES F D PK+WKG CK
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKG-ICK 59
Query: 139 GGQNFT---CNNKIIGARYYSGINTTREYQL-----------GHGTHMASIAAGNLVVGA 184
G F CN K+IGA Y++ + + GHGTH ASI AGN G
Sbjct: 60 PGTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGV 119
Query: 185 SFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFA 244
S G A G RG P AR+A Y+ + +D++AA D A+ADGVD+I
Sbjct: 120 SHFGYAPGTARGVAPRARLAVYKFS-FNEGTFTSDLIAAMDQAVADGVDMISISY-GYRF 177
Query: 245 FDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAI 304
EDA++I +F AM KG+L + GN GP S +PWIL VA DR F
Sbjct: 178 IPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLT 237
Query: 305 LGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLC 364
LG+G + G ++ P P+ Y KT + EL + I++C
Sbjct: 238 LGNGLKIRGWSLFPARAFVRDSPVIYNKTLSDCSSEEL--------LSQVENPENTIVIC 289
Query: 365 D---NFRGDVET-FRVGALGSI---QPASTIMSHPTPFPTVILKMEDFERVKLYINSTEK 417
D +F + R +I + S P P V++ ++ ++V Y+ ++
Sbjct: 290 DDNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVT 349
Query: 418 PQVHILRS-MAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNH 476
P I + APVV S RGPS+ I KPDI AP V ILAAY ++
Sbjct: 350 PTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSI 409
Query: 477 PMDH-RFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGT---- 531
+ Y + SGTS+A+ AAG AA +++ HP+WSPS+I+SA+MTTA ++ T
Sbjct: 410 GTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPI 469
Query: 532 -----VNRGREFDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNS 586
D G+GH+DP +A +PGLVY+ DY+ +LC + ++ + + I+ ++
Sbjct: 470 KDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSA 529
Query: 587 SCPEGTSIATKDLNLPSIAAQVEVHNPFSI---KFLRTVTNVGLANTTYKAEVKTTSIDV 643
S S + DLN PS A + F++ KF RTVTNVG TYKA++K +
Sbjct: 530 SHN--CSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPK-NS 586
Query: 644 KINVTPDALSFESVNDKKSFVVTVDGAILQANHTVSASLLW--SDGTHNVRSPIVVYT 699
I+V+P L F++ N+K+S+ +T+ + S+ W +G H+VRSPIV
Sbjct: 587 TISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTSP 644
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 363 bits (934), Expect = e-114
Identities = 107/613 (17%), Positives = 193/613 (31%), Gaps = 87/613 (14%)
Query: 102 SDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFT-------CNNKIIGARY 154
+ ++ V+D G + + + K + + N+K+
Sbjct: 17 AGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKED-LEKAKKEHGITYGEWVNDKVAYYHD 75
Query: 155 YSGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP 214
YS T Q HGTH++ I +GN A + + GA+P A++ RV
Sbjct: 76 YSKDGKTAVDQ-EHGTHVSGILSGN----APSETKEPYRLEGAMPEAQLLLMRVE---IV 127
Query: 215 ----CNEADILAAFDDAIADGVDII---LTGATYGFAFDFAEDAVAIGAFHAMEKGILTA 267
+ A DAI G +I A A+ D +A KG+
Sbjct: 128 NGLADYARNYAQAIRDAINLGAKVINMSFGNA--ALAYANLPDETKKAFDYAKSKGVSIV 185
Query: 268 VPTGNMGPKP---ASTVVVAPWILTV-AGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKG 323
GN + P V ++ D + D V +
Sbjct: 186 TSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQD 245
Query: 324 NKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDV-------ETFRV 376
+ P+ + A D VKGKI L + RGD+ + +
Sbjct: 246 KEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIE--RGDIDFKDKIAKAKKA 303
Query: 377 GALGSI------QPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKD 430
GA+G + + + + P + +D +K T +
Sbjct: 304 GAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNPQKTITFNA---TPKVLPT 360
Query: 431 DAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSG 490
+ + FS G + IKPDI+AP IL++ KY LSG
Sbjct: 361 ASGTKLSRFSSWGLT--ADGNIKPDIAAPGQDILSSVANN-------------KYAKLSG 405
Query: 491 TSIASAFAAGAAAYVRSFHPDWSP--------SSIKSALMTTALLMNGTVNRGRE--FDY 540
TS+++ AG ++ + P K LM++A + +
Sbjct: 406 TSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQ 465
Query: 541 GSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRL-ISGDNSSCPEGTSIATKDL 599
G+G +D KA+ + V + D + +K + ++ N S ++L
Sbjct: 466 GAGAVDAKKASAATMY--VTDKDNTSSKVHLNNVSDKFEVTVNVHN------KSDKPQEL 517
Query: 600 NLPSIAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKT-TSIDVKINVTPDALSFESVN 658
+ +V V + K + +S V + + S + +
Sbjct: 518 YYQATVQTDKVDGKHF----ALAPKVLYETSWQKITIPANSSKQVTVPIDASRFSKDLLA 573
Query: 659 DKKSFVVTVDGAI 671
K+ ++G +
Sbjct: 574 QMKNGYF-LEGFV 585
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 4e-20
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 8/127 (6%)
Query: 438 PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAF 497
FS RGP+ + +KP++ AP I+AA G D Y GT++A+
Sbjct: 311 DFSSRGPT--ADNRLKPEVVAPGNWIIAARASGTSMGQPIND----YYTAAPGTAMATPH 364
Query: 498 AAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATNPGLVY 557
AG AA + HP W+P +K+AL+ TA + + YG+G ++ KA
Sbjct: 365 VAGIAALLLQAHPSWTPDKVKTALIETA--DIVKPDEIADIAYGAGRVNAYKAAYYDNYA 422
Query: 558 EVLEGDY 564
++ Y
Sbjct: 423 KLTFTGY 429
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 54/282 (19%), Positives = 95/282 (33%), Gaps = 71/282 (25%)
Query: 39 LVRSYERSFNGFAAKLTDEEQNRI-----------SRMDGIVSVFPSKTLQLQTT----- 82
+ +Y A K+ ++ I +++ G+ + +++
Sbjct: 62 IKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLD 120
Query: 83 RSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQN 142
S + S + IG++D GI K G +
Sbjct: 121 ESAAQVMATNMWNLGYD-GSGITIGIIDTGIDASHPDLQGK-------------VIGWVD 166
Query: 143 FTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSAR 202
F +G T + GHGTH+ASIAAG + G +G P A+
Sbjct: 167 FV-----------NGKTTPYDDN-GHGTHVASIAAGT-------GAASNGKYKGMAPGAK 207
Query: 203 IAAYRVCHYPWPCNEADILA----AFDDAIADGVDII---LTGATYGFAFDFAEDAVAIG 255
+ +V + + +DI+ A + G+ +I L + D AV
Sbjct: 208 LVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVN-- 265
Query: 256 AFHAMEKGILTAVPTGNMGPK------PASTVVVAPWILTVA 291
+A + G++ V GN GP PA+ A ++TV
Sbjct: 266 --NAWDAGLVVVVAAGNSGPNKYTVGSPAA----ASKVITVG 301
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 1e-18
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 27/113 (23%)
Query: 438 PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAF 497
FS GP + D+ AP V I + G KY +GTS+AS
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAYNGTSMASPH 226
Query: 498 AAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKA 550
AGAAA + S HP+W+ + ++S+L T G F YG G I+ A
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTT------TKLGDSFYYGKGLINVQAA 273
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 36/141 (25%), Positives = 55/141 (39%), Gaps = 31/141 (21%)
Query: 167 GHGTHMASIAAGNLVVGASFDGLAKGN---VRGAVPSARIAAYRVCHYPWPCNEADILAA 223
HGTH+A A A N V G PSA + A +V + I+
Sbjct: 63 SHGTHVAGTVA------------ALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWIING 110
Query: 224 FDDAIADGVDII---LTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPAST 280
+ AIA+ +D+I L G + A AV A+ G++ GN G +S+
Sbjct: 111 IEWAIANNMDVINMSLGGPSGSAALK---AAVD----KAVASGVVVVAAAGNEGTSGSSS 163
Query: 281 VVV----APWILTVAGSSIDR 297
V P ++ V ++D
Sbjct: 164 TVGYPGKYPSVIAVG--AVDS 182
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 84.9 bits (211), Expect = 2e-18
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 27/113 (23%)
Query: 438 PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAF 497
FS G + ++ AP + + Y Y L+GTS+AS
Sbjct: 187 SFSSVGA--------ELEVMAPGAGVYSTYPTN-------------TYATLNGTSMASPH 225
Query: 498 AAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKA 550
AGAAA + S HP+ S S +++ L +TA G F YG G I+ A
Sbjct: 226 VAGAAALILSKHPNLSASQVRNRLSSTA------TYLGSSFYYGKGLINVEAA 272
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 4e-09
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 29/135 (21%)
Query: 167 GHGTHMASIAAGNLVVGASFDGLAKGN---VRGAVPSARIAAYRVCHYPWPCNEADILAA 223
GHGTH+A A A N V G PS + A +V + + + I++
Sbjct: 62 GHGTHVAGTVA------------ALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYSGIVSG 109
Query: 224 FDDAIADGVDII---LTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPAST 280
+ A +G+D+I L GA+ A AV +A +G++ GN G ++
Sbjct: 110 IEWATTNGMDVINMSLGGASGSTAMK---QAVD----NAYARGVVVVAAAGNSGNSGSTN 162
Query: 281 VVV----APWILTVA 291
+ ++ V
Sbjct: 163 TIGYPAKYDSVIAVG 177
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 3e-18
Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 21/117 (17%)
Query: 438 PFSGRGPSKITPDII----KPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSI 493
+S RG D + +ISAP + + + G YN +SGTS+
Sbjct: 205 DYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNG-------------GYNTISGTSM 251
Query: 494 ASAFAAGAAAYVRSFHPDWSPSSIKSALMTTA----LLMNGTVNRGREFDYGSGHID 546
A+ +G AA + + +P S + ++S L A + G ++ G G
Sbjct: 252 ATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDYASGFGFAR 308
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 4e-07
Identities = 37/167 (22%), Positives = 49/167 (29%), Gaps = 40/167 (23%)
Query: 139 GGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAV 198
++FT I GHGTH+A A + + G
Sbjct: 50 QCKDFTGATTPINNSCTDR--------NGHGTHVAGTALADGGSDQ-------AGIYGVA 94
Query: 199 PSARIAAYRVCHYPWPCNEADILAAFDDAIADGV-----DII---LTGATYGFAFDFAED 250
P A + AY+V DI AA A II L +
Sbjct: 95 PDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSLIS---S 151
Query: 251 AVAIGAFHAMEKGILTAVPTGNMGPK------PASTVVVAPWILTVA 291
AV +A KG+L GN G P + P + VA
Sbjct: 152 AVN----YAYSKGVLIVAAAGNSGYSQGTIGYPGA----LPNAIAVA 190
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 87.2 bits (215), Expect = 1e-17
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 23/136 (16%)
Query: 436 VHPFSGRGPSKITPD-IIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIA 494
V+ ++ R P D + AP I + K +++GTS+A
Sbjct: 419 VYTWTSRDP---CIDGGQGVTVCAPGGAIASVPQFTMS-----------KSQLMNGTSMA 464
Query: 495 SAFAAGAAAYVRS----FHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKA 550
+ AGA A + S + ++SP SIK A+ TA + F G G ++ KA
Sbjct: 465 APHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYV----DPFAQGHGLLNVEKA 520
Query: 551 TNPGLVYEVLEGDYIK 566
+ + + ++
Sbjct: 521 FEHLTEHRQSKDNMLR 536
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 60.2 bits (145), Expect = 2e-09
Identities = 35/180 (19%), Positives = 64/180 (35%), Gaps = 34/180 (18%)
Query: 167 GHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNE--ADILAAF 224
HGTH++SIA+GN +S +V G P+A+I + + E ++ A
Sbjct: 271 PHGTHVSSIASGN---HSS------RDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAM 321
Query: 225 DDAI-----ADGVDII---LTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPK 276
+ +D+I G ++ + + G++ GN GP
Sbjct: 322 TKVMELCRDGRRIDVINMSY-GEHANWSNSGRIGELMNEV--VNKYGVVWVASAGNHGPA 378
Query: 277 PASTV-----VVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYG 331
TV + P ++ V + P + +A + V +T + P G
Sbjct: 379 -LCTVGTPPDISQPSLIGVG--AYVSPQMMEAEYAMREK-LPGNVYTWTSRD---PCIDG 431
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 35/113 (30%), Positives = 47/113 (41%), Gaps = 27/113 (23%)
Query: 438 PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAF 497
FS G DI AP V + + Y G Y L+GTS+A+
Sbjct: 182 SFSQYGA--------GLDIVAPGVNVQSTYPGS-------------TYASLNGTSMATPH 220
Query: 498 AAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKA 550
AGAAA V+ +P WS I++ L TA + G YGSG ++ A
Sbjct: 221 VAGAAALVKQKNPSWSNVQIRNHLKNTA------TSLGSTNLYGSGLVNAEAA 267
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 4e-08
Identities = 31/135 (22%), Positives = 46/135 (34%), Gaps = 33/135 (24%)
Query: 167 GHGTHMASIAAGNLVVGASFDGLAKGN---VRGAVPSARIAAYRVCHYPWPCNEADILAA 223
GHGTH+A A A N V G PSA + A +V + + I
Sbjct: 61 GHGTHVAGTIA------------ALNNSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQG 108
Query: 224 FDDAIADGVDII---LTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPK---- 276
+ A +G+ + L + + AV A +G+L +GN G
Sbjct: 109 LEWAGNNGMHVANLSLGSPSPSATLE---QAVN----SATSRGVLVVAASGNSGAGSISY 161
Query: 277 PASTVVVAPWILTVA 291
PA + V
Sbjct: 162 PAR----YANAMAVG 172
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 82.8 bits (204), Expect = 1e-16
Identities = 43/249 (17%), Positives = 73/249 (29%), Gaps = 23/249 (9%)
Query: 429 KDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFV----- 483
V FS R + AP V IL+ G +
Sbjct: 321 YYGGTFRVAGFSSRSDG--------VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGG 372
Query: 484 KYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSG 543
Y+ GTS+A+ G A + P+ P I+ L TA NG G + D G G
Sbjct: 373 TYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN---GWDHDTGYG 429
Query: 544 HIDPVKA------TNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNSSCPEGTSIATK 597
+ A T G+ + K G+ + +G G +
Sbjct: 430 LVKLDAALQGPLPTQGGVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCYYAKTGPDGIAR 489
Query: 598 DLNLPSIAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFESV 657
++ S + V P + Y ++ + + + +S ++
Sbjct: 490 FPHIDSGTYDIFVGGPDHWDRALAPYDGESIPGGYAIALRMAE-ERQASFVGFGVSPDAT 548
Query: 658 NDKKSFVVT 666
+F T
Sbjct: 549 QLNVNFNST 557
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 4e-08
Identities = 33/182 (18%), Positives = 52/182 (28%), Gaps = 47/182 (25%)
Query: 139 GGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGN---VR 195
G + ++ S GTH+A A AK + +
Sbjct: 178 AGYRPAFDEELPAGTDSSYGG-------SAGTHVAGTIA------------AKKDGKGIV 218
Query: 196 GAVPSARIAAYRVCHYPWPCNE------ADILAAFDDAIADGVDII---LTGATYGFAFD 246
G P A+I + P + A A G ++ G Y +
Sbjct: 219 GVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTM- 277
Query: 247 FAEDAVAIGAFHAMEKGILTAVPTGNMGPK-----PASTVVVAPWILTVAGSSIDRPFID 301
++A +AME G++ V GN PA P ++ VA
Sbjct: 278 --KEAFD----YAMEHGVVMVVSAGNNTSDSHHQYPAG----YPGVIQVAALDYYGGTFR 327
Query: 302 KA 303
A
Sbjct: 328 VA 329
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 2e-15
Identities = 53/225 (23%), Positives = 83/225 (36%), Gaps = 28/225 (12%)
Query: 438 PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAF 497
FS RGP+ IKPD+ AP IL+A + P + + KY + GTS+A+
Sbjct: 204 QFSSRGPT--KDGRIKPDVMAPGTFILSARSSLA-PDSSFWANHDSKYAYMGGTSMATPI 260
Query: 498 AAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGRE---FDYGSGHIDPVKATNPG 554
AG A +R + K +L+ A L+ G + G + G G + K+ N
Sbjct: 261 VAGNVAQLREHFVKNRGITPKPSLL-KAALIAGAADIGLGYPNGNQGWGRVTLDKSLNVA 319
Query: 555 LVYEVLEGDYIKMLCGMGYSVN-------KIRLISGDNSSCPEGTSIATKDLNLPSIAAQ 607
V E + YS KI L+ D + + DL+L A
Sbjct: 320 YVN---ESSSLSTSQKATYSFTATAGKPLKISLVWSDAPASTTASVTLVNDLDLVITAPN 376
Query: 608 VEVH--NPFSIKFLRTVTNVG---------LANTTYKAEVKTTSI 641
+ N F+ + + TY EV+ ++
Sbjct: 377 GTQYVGNDFTSPYNDNWDGRNNVENVFINAPQSGTYTIEVQAYNV 421
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 2e-09
Identities = 36/215 (16%), Positives = 58/215 (26%), Gaps = 42/215 (19%)
Query: 102 SDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTT 161
I+ V D G+ + + F KI N
Sbjct: 22 QGQIVAVADTGLDTGRNDSSM-----------------HEAF--RGKITALYALGRTNNA 62
Query: 162 REYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCN--EAD 219
+ GHGTH+A GN G++ G+A P A + + ++
Sbjct: 63 NDTN-GHGTHVAGSVLGN---GSTNKGMA--------PQANLVFQSIMDSGGGLGGLPSN 110
Query: 220 ILAAFDDAIADGVDII---LTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPK 276
+ F A + G I A G + + + + GN GP
Sbjct: 111 LQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDY----VRKNDMTILFAAGNEGPN 166
Query: 277 PASTVV--VAPWILTVAGSSIDRPFIDKAILGDGT 309
+ A +TV + RP
Sbjct: 167 GGTISAPGTAKNAITVGATENLRPSFGSYADNINH 201
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 3e-15
Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 24/113 (21%)
Query: 438 PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAF 497
S G + + DI+AP I K SGTS A+A
Sbjct: 238 TGSRFGNNWV-------DIAAPGQNITFLRPDA-------------KTGTGSGTSEATAI 277
Query: 498 AAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKA 550
+G A + S +P + + +K L+ +A V++ ++ KA
Sbjct: 278 VSGVLAAMTSCNPRATATELKRTLLESADKYPSLVDK----VTEGRVLNAEKA 326
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 5e-07
Identities = 27/190 (14%), Positives = 49/190 (25%), Gaps = 43/190 (22%)
Query: 102 SDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTT 161
+ +++ V+D+G+ + D +FT + + +
Sbjct: 44 TPVVVSVVDSGVAFIGGLSDS--------------EFAKFSFTQDGSPFPVKKSEALY-- 87
Query: 162 REYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCH---YPWPCNEA 218
HGT MAS+ A ++ + G P A I++ RV
Sbjct: 88 -----IHGTAMASLIA------------SRYGIYGVYPHALISSRRVIPDGVQDSWIRAI 130
Query: 219 DILAAFDDAIADGVDII---LTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGP 275
+ + + II A + E L GN G
Sbjct: 131 ESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSR----MGRNNDRLIVAAVGNDGA 186
Query: 276 KPASTVVVAP 285
Sbjct: 187 DIRKLSAQQR 196
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 29/118 (24%)
Query: 438 PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAF 497
F+ DI AP V I + Y Y LSGT++A+
Sbjct: 217 DFTNTNEE--------IDIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPH 255
Query: 498 AAGAAAYVRSFHPD-----WSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKA 550
AGA A + + D S + I + L+ A + T + G +D V+
Sbjct: 256 VAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFT---AQAEGNGFLTLDLVER 310
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 29/142 (20%), Positives = 40/142 (28%), Gaps = 36/142 (25%)
Query: 167 GHGTHMASIAAGNLVVGASFDGLAKGNVRGAV---PSARIAAYRVCHYPWPCNEADILAA 223
GHGTH+A A A G V P A + + I A
Sbjct: 85 GHGTHVAGTVA------------AAETGSGVVGVAPKADLFIIKALSGDGSGEMGWIAKA 132
Query: 224 FDDAI------ADGVDII---LTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMG 274
A+ + + II L G T DAV +A+ + GN G
Sbjct: 133 IRYAVDWRGPKGEQMRIITMSLGGPTDSEELH---DAVK----YAVSNNVSVVCAAGNEG 185
Query: 275 PKPASTVVV-----APWILTVA 291
T ++ V
Sbjct: 186 DGREDTNEFAYPAAYNEVIAVG 207
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 28/113 (24%)
Query: 438 PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAF 497
FS G D++AP I + Y Y LSGTS+A+
Sbjct: 192 SFSTYGSWV--------DVAAPGSSIYSTYPTS-------------TYASLSGTSMATPH 230
Query: 498 AAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKA 550
AG A + S S S+I++A+ TA ++GT + G ++ KA
Sbjct: 231 VAGVAGLLAS--QGRSASNIRAAIENTADKISGTGT-----YWAKGRVNAYKA 276
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 7e-08
Identities = 48/208 (23%), Positives = 64/208 (30%), Gaps = 63/208 (30%)
Query: 102 SDMIIGVLDNGIWPE-SDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINT 160
S I ++D G+ D+ G GG +F N+ +T
Sbjct: 30 SGAKIAIVDTGVQSNHPDL--------------AGKVVGGWDFVDND-----------ST 64
Query: 161 TREYQLGHGTHMASIAAGNLVVGASFDGLAKGN----VRGAVPSARIAAYRVCHYPWPCN 216
+ GHGTH A IAA A N + G P A I A RV
Sbjct: 65 PQNGN-GHGTHCAGIAA------------AVTNNSTGIAGTAPKASILAVRVLDNSGSGT 111
Query: 217 EADILAAFDDAIADGVDII---LTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNM 273
+ A G +I L G + AV +A KG + GN
Sbjct: 112 WTAVANGITYAADQGAKVISLSLGGTVGNSGL---QQAVN----YAWNKGSVVVAAAGNA 164
Query: 274 GPK----PASTVVVAPWILTVAGSSIDR 297
G PA + VA S D+
Sbjct: 165 GNTAPNYPAY----YSNAIAVA--STDQ 186
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 3e-13
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 39/126 (30%)
Query: 438 PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAF 497
FS R P ++SAP V IL+ Y Y L GT++A+
Sbjct: 215 SFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMATPH 251
Query: 498 AAGAAAYVRSFH-------------PDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGH 544
+G A +++ + D S ++++ L TA + T G + DYG G
Sbjct: 252 VSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPT---GWDADYGYGV 308
Query: 545 IDPVKA 550
+ A
Sbjct: 309 VRAALA 314
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 34/188 (18%), Positives = 51/188 (27%), Gaps = 60/188 (31%)
Query: 139 GGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGN---VR 195
+ R + N GHGTH+ A A N V
Sbjct: 53 WCVSTLRGKVSTKLRDCADQN-------GHGTHVIGTIA------------ALNNDIGVV 93
Query: 196 GAVPSARIAAYRVCHYPWPCNEADILAAFDDAIAD--------------------GVDII 235
G P +I + RV + +DI + AI ++I
Sbjct: 94 GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVI 153
Query: 236 ---LTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPK----PASTVVVAPWIL 288
L G D + A GI+ +GN G PA+ P ++
Sbjct: 154 SMSLGGPADDSYLY---DMII----QAYNAGIVIVAASGNEGAPSPSYPAA----YPEVI 202
Query: 289 TVAGSSID 296
V +
Sbjct: 203 AVGAIDSN 210
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 70.6 bits (173), Expect = 3e-13
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 22/117 (18%)
Query: 438 PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAF 497
FS G + K I AP +IL A + L+GTS+A+
Sbjct: 255 HFSNWGGNNT-----KEGILAPGEEILGAQPCT------------EEPVRLTGTSMAAPV 297
Query: 498 AAGAAAYVRSFH----PDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKA 550
G +A + S ++++AL+ TA+ + V G ++ A
Sbjct: 298 MTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEV-VEEPERCLRGFVNIPGA 353
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 8e-11
Identities = 31/220 (14%), Positives = 55/220 (25%), Gaps = 47/220 (21%)
Query: 99 TVESDMIIGVLDNGI------------WPESDMFDDKSFGPPPKKWKGGACKGGQNFTCN 146
+ + I ++D + + + P+ + Q
Sbjct: 46 LGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGK 105
Query: 147 NKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGN--VRGAVPSARIA 204
K R H H+ S + + V G P+ R+
Sbjct: 106 EKEEALEAVIPDTKDRIVLNDHACHVTSTIV------------GQEHSPVFGIAPNCRVI 153
Query: 205 AYRVCHYP-----WPCNEADILAAFDDAIADGVDII---LTGATYGFAFDFA-EDAVAIG 255
+ ++ A D A+ G +II T + A+
Sbjct: 154 NMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIK-- 211
Query: 256 AFHAMEKGILTAVPTGNMGPK----PASTVVVAPWILTVA 291
+ +L PTGN + PA P L V
Sbjct: 212 --KCQDNNVLIVSPTGNNSNESWCLPAV----LPGTLAVG 245
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 28/113 (24%)
Query: 438 PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAF 497
FS G D+ AP V I++ TG +Y +SGTS+AS
Sbjct: 193 SFSNYGTW--------VDVVAPGVDIVSTITGN-------------RYAYMSGTSMASPH 231
Query: 498 AAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKA 550
AG AA + S + I+ A+ TA ++GT + G I+ A
Sbjct: 232 VAGLAALLAS--QGRNNIEIRQAIEQTADKISGTGT-----YFKYGRINSYNA 277
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 1e-07
Identities = 47/208 (22%), Positives = 69/208 (33%), Gaps = 63/208 (30%)
Query: 102 SDMIIGVLDNGIWPE-SDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINT 160
S I V+D G+ D+ G G +F N+
Sbjct: 31 SGQEIAVIDTGVDYTHPDL--------------DGKVIKGYDFVDND-----------YD 65
Query: 161 TREYQLGHGTHMASIAAGNLVVGASFDGLAKGN----VRGAVPSARIAAYRVCHYPWPCN 216
+ HGTH+A IAA A+ N + G P+ RI A R
Sbjct: 66 PMDLN-NHGTHVAGIAA------------AETNNATGIAGMAPNTRILAVRALDRNGSGT 112
Query: 217 EADILAAFDDAIADGVDII---LTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNM 273
+DI A A G ++I L + E+AV +A KG + GN
Sbjct: 113 LSDIADAIIYAADSGAEVINLSLGCDCHTTTL---ENAVN----YAWNKGSVVVAAAGNN 165
Query: 274 GPK----PASTVVVAPWILTVAGSSIDR 297
G PAS ++ V ++D+
Sbjct: 166 GSSTTFEPAS----YENVIAVG--AVDQ 187
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 21/123 (17%)
Query: 438 PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFV---------KYNIL 488
FS G + DI+AP G + +Y
Sbjct: 351 EFSNFGMNYT-------DIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYIYQ 403
Query: 489 SGTSIASAFAAGAAAYVRS-FHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDP 547
+GT++A+ +GA A + +H + P L N YG G +D
Sbjct: 404 AGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN----KPFSRYGHGELDV 459
Query: 548 VKA 550
KA
Sbjct: 460 YKA 462
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 8e-08
Identities = 28/202 (13%), Positives = 48/202 (23%), Gaps = 68/202 (33%)
Query: 102 SDMIIGVLDNGI-----------WPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKII 150
++ I ++D G+ +S G T +
Sbjct: 146 ANTKIAIIDTGVMKNHDDLKNNFSTDSKNL---------------VPLNGFRGTEPEETG 190
Query: 151 GARYYSGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCH 210
+ GHGT ++ + N G + G P+ + YRV
Sbjct: 191 DVHDVNDRK-------GHGTMVSGQTSAN------------GKLIGVAPNNKFTMYRV-- 229
Query: 211 YPWPCNE-----ADILAAFDDAIADGVDII---LTGATYGFAFDFAEDAVAIGAFH---- 258
+ A A DG +I + D +
Sbjct: 230 ----FGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQ 285
Query: 259 -----AMEKGILTAVPTGNMGP 275
A +K + GN G
Sbjct: 286 KAINYAKKKKSIVVAAAGNDGI 307
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 4e-12
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 39/126 (30%)
Query: 438 PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAF 497
FS R P ++SAP V IL+ Y Y L GT++A+
Sbjct: 290 SFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMATPH 326
Query: 498 AAGAAAYVRSFH-------------PDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGH 544
+G A +++ + D S ++++ L TA + T G + DYG G
Sbjct: 327 VSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPT---GWDADYGYGV 383
Query: 545 IDPVKA 550
+ A
Sbjct: 384 VRAALA 389
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 2e-07
Identities = 49/305 (16%), Positives = 81/305 (26%), Gaps = 92/305 (30%)
Query: 39 LVRSYERSFNGFAAKLTDEEQNRISRMDGIVSVFPSKTLQLQTTRSWDFMGFPETVKREP 98
+V ++ + ++ +M G+ V L SW G + + P
Sbjct: 26 IVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIP 84
Query: 99 ----------------TVESDMIIGVLDNGIWPE-SDMFDDKSFGPPPKKWKGGACKGGQ 141
S + + VLD G+ + D+
Sbjct: 85 WGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDL--------------AANIAWCV 130
Query: 142 NFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAV--- 198
+ R + N GHGTH+ A A N G V
Sbjct: 131 STLRGKVSTKLRDCADQN-------GHGTHVIGTIA------------ALNNDIGVVGVA 171
Query: 199 PSARIAAYRVCHYPWPCNEADILAAFDDAIAD--------------------GVDII--- 235
P +I + RV + +DI + AI ++I
Sbjct: 172 PGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMS 231
Query: 236 LTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPK----PASTVVVAPWILTVA 291
L G D + A GI+ +GN G PA+ P ++ V
Sbjct: 232 LGGPADDSYLY---DMII----QAYNAGIVIVAASGNEGAPSPSYPAA----YPEVIAVG 280
Query: 292 GSSID 296
+
Sbjct: 281 AIDSN 285
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 5e-12
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 22/117 (18%)
Query: 438 PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAF 497
FS G D++AP IL+ G Y+ ++GTS+A+
Sbjct: 236 SFSNYGVD--------VDLAAPGQDILSTVDSGTRRPVSD------AYSFMAGTSMATPH 281
Query: 498 AAGAAAYVRS----FHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKA 550
+G AA V S + + +P+ +K L++T NG ++R GSG +D A
Sbjct: 282 VSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDRA----LGSGIVDAEAA 334
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 3e-11
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 484 KYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSG 543
Y +GTS+A+ +G A V S+HP+ S S +++AL TA ++ GR+ G G
Sbjct: 361 DYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVA---GRDNQTGYG 417
Query: 544 HIDPVKATN 552
I+ V A
Sbjct: 418 MINAVAAKA 426
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 3e-11
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 18/85 (21%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSP 514
D+ AP QI +A+ G Y +SGTS+A+ AG AA + +P
Sbjct: 196 DLFAPGSQIKSAWYDG-------------GYKTISGTSMATPHVAGVAALYLQENNGLTP 242
Query: 515 SSIKSALMTTAL-----LMNGTVNR 534
+ L + A GT N+
Sbjct: 243 LQLTGLLNSRASENKVSDTRGTTNK 267
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 28/139 (20%), Positives = 44/139 (31%), Gaps = 34/139 (24%)
Query: 167 GHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDD 226
GHGTH+A G+ G+AK I RV + +++ D
Sbjct: 69 GHGTHVAGTIGGSQY------GVAKN--------VNIVGVRVLSCSGSGTTSGVISGVDW 114
Query: 227 AIADGVDIILT----GATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPK-----P 277
+ + G A D AV A++ G+ + GN P
Sbjct: 115 VAQNASGPSVANMSLGGGQSTALD---SAVQ----GAIQSGVSFMLAAGNSNADACNTSP 167
Query: 278 ASTVVVAPWILTVAGSSID 296
A P +TV ++
Sbjct: 168 AR----VPSGVTVGSTTSS 182
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 4e-11
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSP 514
DI AP I +++ N +SGTS+AS AG AA +P+ SP
Sbjct: 198 DIYAPGSSITSSWYTSNS-----------ATNTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 515 SSIKSALMTTAL------LMNGTVNR 534
+ + + L T A G+ N+
Sbjct: 247 AQVTNLLKTRATADKVTDAKTGSPNK 272
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 34/139 (24%)
Query: 167 GHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDD 226
GHGTH+A G+ G+AK + RV + + + ++A +
Sbjct: 71 GHGTHVAGTIGGSTY------GVAKN--------VNVVGVRVLNCSGSGSNSGVIAGINW 116
Query: 227 AIADGVDIILT----GATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPK-----P 277
+ + G A D DAV A+ GI V GN P
Sbjct: 117 VKNNASGPAVANMSLGGGASQATD---DAVN----AAVAAGITFVVAAGNDNSNACNYSP 169
Query: 278 ASTVVVAPWILTVAGSSID 296
A A +TV ++ +
Sbjct: 170 AR----AADAITVGSTTSN 184
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 9e-11
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 17/86 (19%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSP 514
D+ AP I +A+ L+GTS+A+ AG AA +P +P
Sbjct: 196 DLFAPGASIPSAWYTSDT-----------ATQTLNGTSMATPHVAGVAALYLEQNPSATP 244
Query: 515 SSIKSALMTTAL------LMNGTVNR 534
+S+ SA++ A + +G+ NR
Sbjct: 245 ASVASAILNGATTGRLSGIGSGSPNR 270
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 34/139 (24%)
Query: 167 GHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDD 226
GHGTH+A G G+AK + A RV + + ++A D
Sbjct: 69 GHGTHVAGTIGGVTY------GVAKA--------VNLYAVRVLDCNGSGSTSGVIAGVDW 114
Query: 227 AIADGVDIILT----GATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPK-----P 277
+ + G A D +AV +++ G++ AV GN P
Sbjct: 115 VTRNHRRPAVANMSLGGGVSTALD---NAVK----NSIAAGVVYAVAAGNDNANACNYSP 167
Query: 278 ASTVVVAPWILTVAGSSID 296
A LTV ++
Sbjct: 168 AR----VAEALTVGATTSS 182
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 3e-10
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSP 514
D+ AP I+ A + + SGTS A+A AG AA + S P+ +
Sbjct: 208 DLFAPGEDIIGASSDC-----------STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTL 256
Query: 515 SSIKSALMTTA 525
+ ++ L+ +
Sbjct: 257 AELRQRLIHFS 267
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 26/139 (18%), Positives = 45/139 (32%), Gaps = 30/139 (21%)
Query: 167 GHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDD 226
HGTH+A + +G G+AKG A + + RV + + L +
Sbjct: 73 SHGTHLAGVVSGRDA------GVAKG--------ASMRSLRVLNCQGKGTVSGTLIGLEF 118
Query: 227 AIADGVDIILTGAT----YGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPK-----P 277
+ + + +A A G++ GN P
Sbjct: 119 IRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQRLARA---GVVLVTAAGNFRDDACLYSP 175
Query: 278 ASTVVVAPWILTVAGSSID 296
AS AP ++TV ++
Sbjct: 176 AS----APEVITVGATNAQ 190
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 1e-09
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 11/71 (15%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSP 514
D+ AP I+ A + + SGTS A+A AG AA + S P+ +
Sbjct: 360 DLFAPGEDIIGASSDC-----------STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTL 408
Query: 515 SSIKSALMTTA 525
+ ++ L+ +
Sbjct: 409 AELRQRLIHFS 419
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 1e-08
Identities = 43/300 (14%), Positives = 84/300 (28%), Gaps = 66/300 (22%)
Query: 17 SPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQNRISRMDGIVSVFPSKT 76
S LQ ++ + GF K++ + ++ + + +
Sbjct: 89 SQSERTARRLQAQAARRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSS 148
Query: 77 LQLQTTRSW-----DFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDD--KSFGPPP 129
+ Q+ W + + P S + + +LD I + +
Sbjct: 149 VFAQSI-PWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVMVTDFEN 207
Query: 130 KKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVGASFDGL 189
+ G Q C+ HGTH+A + +G G+
Sbjct: 208 VPEEDGTRFHRQASKCD--------------------SHGTHLAGVVSGRDA------GV 241
Query: 190 AKGNVRGAVPSARIAAYRVCHYPWPCN----EADILAAFDDAIADGVDIILTGAT----Y 241
AKG A + + RV + C + L + + +
Sbjct: 242 AKG--------ASMRSLRVLN----CQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPL 289
Query: 242 GFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPK-----PASTVVVAPWILTVAGSSID 296
+ +A A G++ GN PAS AP ++TV ++
Sbjct: 290 AGGYSRVLNAACQRLARA---GVVLVTAAGNFRDDACLYSPAS----APEVITVGATNAQ 342
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 4e-09
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 20/86 (23%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSP 514
DI AP I + + GG + N +SGTS+A+ AG AAY+ S
Sbjct: 201 DIFAPGTSITSTWIGG-------------RTNTISGTSMATPHIAGLAAYLFGLEGG-SA 246
Query: 515 SSIKSALMTTAL------LMNGTVNR 534
++ + T + + +GTVN
Sbjct: 247 GAMCGRIQTLSTKNVLTSIPSGTVNY 272
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 31/144 (21%), Positives = 43/144 (29%), Gaps = 39/144 (27%)
Query: 167 GHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDD 226
GHGTH A G+AK I +V + ++I+A D
Sbjct: 69 GHGTHCAGTIGSKTW------GVAKK--------VSIFGVKVLDDSGSGSLSNIIAGMDF 114
Query: 227 AIADGVDIILT---------GATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPK- 276
+D G Y A + A A G+ AV GN
Sbjct: 115 VASDRQSRNCPRRTVASMSLGGGYSAALN---QAAA----RLQSSGVFVAVAAGNDNRDA 167
Query: 277 ----PASTVVVAPWILTVAGSSID 296
PAS P + TV + +
Sbjct: 168 ANTSPAS----EPTVCTVGATDSN 187
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 20/86 (23%)
Query: 455 DISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSP 514
DI P IL+ + GG +SGTS+A+ AG AAY+ + +
Sbjct: 200 DIFGPGTDILSTWIGG-------------STRSISGTSMATPHVAGLAAYLMTLGKT-TA 245
Query: 515 SSIKSALMTTAL------LMNGTVNR 534
+S + TA + GTVN
Sbjct: 246 ASACRYIADTANKGDLSNIPFGTVNL 271
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 30/144 (20%), Positives = 43/144 (29%), Gaps = 39/144 (27%)
Query: 167 GHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDD 226
GHGTH A G+AK ++ +V + I+A D
Sbjct: 68 GHGTHCAGTVGSRTY------GVAKK--------TQLFGVKVLDDNGSGQYSTIIAGMDF 113
Query: 227 AIADGVDIILT---------GATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPK- 276
+D + G Y + + A A G++ AV GN
Sbjct: 114 VASDKNNRNCPKGVVASLSLGGGYSSSVN---SAAA----RLQSSGVMVAVAAGNNNADA 166
Query: 277 ----PASTVVVAPWILTVAGSSID 296
PAS P + TV S
Sbjct: 167 RNYSPAS----EPSVCTVGASDRY 186
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 6e-05
Identities = 71/529 (13%), Positives = 135/529 (25%), Gaps = 191/529 (36%)
Query: 219 DILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNM--GPK 276
DIL+ F+DA D D +D M K IL+ ++
Sbjct: 20 DILSVFEDAFVDNFD-----------CKDVQD---------MPKSILSKEEIDHIIMSKD 59
Query: 277 PASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNAS 336
S + W L + + F V + + N
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKF------------VEEVLRI---------------NYK 92
Query: 337 YPCSELASRQCSLFCLDENLVKGKILLC-DNFRGDVETFRVGALGSIQPASTIMSHPTPF 395
+ S + + +++ + D D + F
Sbjct: 93 FLMSPIKTE-----QRQPSMMTRMYIEQRDRLYNDNQVFA-------------------- 127
Query: 396 PTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAP--VVHPFSGRGPSKITPDIIK 453
K ++ + LR ++ A ++ G G + + D+
Sbjct: 128 -------------KYNVSRLQP--YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 454 PDISAPAVQILAAYTGG--W---GPSNHPMD---------HRFVKYNILSGTSIASAF-- 497
++ W N P ++ N S + +S
Sbjct: 173 SY------KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP-NWTSRSDHSSNIKL 225
Query: 498 -AAGAAAYVRSF-----HPD--------WSPSSIKS------ALMTTALLMNGTVNRGRE 537
A +R + + + + + L+TT R ++
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT---------RFKQ 276
Query: 538 -FDYGSGHIDPVKATNPGLVY--EVLEGDYIKMLCGMGYSVNKIRLISGDNSSCPEGTSI 594
D+ + T+ L + L D +K L
Sbjct: 277 VTDF----LSAATTTHISLDHHSMTLTPDEVKSLL----------------LKY---LDC 313
Query: 595 ATKDLNLPSIAAQVEVHNPFSIKFLRTVTNVGLANTTY----KAEVKTTSIDVKINVTPD 650
+D LP +V NP + + GLA + TT I+ +NV
Sbjct: 314 RPQD--LPR---EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV--- 365
Query: 651 ALSFESVNDKKSFVVTVDGAILQANHTVSA---SLLWSDGTHNVRSPIV 696
E +K F ++ + + SL+W D + +V
Sbjct: 366 ---LEPAEYRKMF---DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 8e-04
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 465 AAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTT 524
Y+ G G H D N GTS A+ AAG + +P+ + ++ + +
Sbjct: 245 VTYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILS 304
Query: 525 ALLMN---------GTVNRGREFDYGSGHID 546
A+ + + + YG G ID
Sbjct: 305 AVGLEKNADGDWRDSAMGKKYSHRYGFGKID 335
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 706 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.91 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.85 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.97 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 98.88 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.87 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.55 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.48 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 97.39 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.33 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 94.5 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 89.77 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 89.63 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 88.83 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 88.26 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 88.13 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 82.25 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 81.57 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 81.15 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-118 Score=1028.73 Aligned_cols=601 Identities=37% Similarity=0.592 Sum_probs=539.0
Q ss_pred ccCCccccCCcc--ccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCccc---ccCceeEeeeec
Q 036374 81 TTRSWDFMGFPE--TVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNF---TCNNKIIGARYY 155 (706)
Q Consensus 81 ~~~s~~~ig~~~--~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f---~~n~k~ig~~~~ 155 (706)
++++|+|+|++. .+|..+.+|+||+|||||||||++||+|.+.+++++|.+|+| .|+.|.+| .||+|+++.++|
T Consensus 1 Tt~s~~flgl~~~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg-~c~~g~~f~~~~cN~kiig~~~f 79 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKG-ICKPGTQFNASMCNRKLIGANYF 79 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCC-CBCCBTTBCTTSCCSSEEEEEEC
T ss_pred CCCChHHcCCCCchhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCcccccc-ccccCccccccccccceeeeEec
Confidence 578999999983 599999999999999999999999999999999999999999 99999988 699999999998
Q ss_pred CC------------CCCcccccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHH
Q 036374 156 SG------------INTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAA 223 (706)
Q Consensus 156 ~~------------~~~~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~a 223 (706)
.. ..+++|. .||||||||||||+..++.+.+|++.|.+.||||+|+|++||+|+ ..++..+++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~D~-~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~-~~g~~~~~i~~A 157 (649)
T 3i6s_A 80 NKGILANDPTVNITMNSARDT-DGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSF-NEGTFTSDLIAA 157 (649)
T ss_dssp CHHHHHHCTTCCCTTCSSBCS-SSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEE-TTEECHHHHHHH
T ss_pred cCcccccccccccCCCCCCCC-CCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccC-CCCCCHHHHHHH
Confidence 51 2467888 999999999999999888888899899999999999999999999 667999999999
Q ss_pred HHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeE
Q 036374 224 FDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKA 303 (706)
Q Consensus 224 i~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~ 303 (706)
|++|+++|+||||||||.. ..++..+++.+++++|.++|++||+||||+|+...++.+.+||+|+|||++.+|.|+..+
T Consensus 158 i~~A~~~gvdVIn~SlG~~-~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~~ 236 (649)
T 3i6s_A 158 MDQAVADGVDMISISYGYR-FIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTL 236 (649)
T ss_dssp HHHHHHTTCSEEEECCCCC-SCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEEE
T ss_pred HHHHHHcCCCEEEeCCccC-CcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeEE
Confidence 9999999999999999987 566788999999999999999999999999999889999999999999999999999999
Q ss_pred EeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcc--cccEEEEee-----cccchheeec
Q 036374 304 ILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLV--KGKILLCDN-----FRGDVETFRV 376 (706)
Q Consensus 304 ~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~gkivl~~~-----~~k~~~~~~~ 376 (706)
.+++++++.|.+++........+||++.. ....|.+..++..++ +||||+|++ .+|..+++++
T Consensus 237 ~lgng~~~~g~sl~~~~~~~~~~plv~~~----------~~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~ 306 (649)
T 3i6s_A 237 TLGNGLKIRGWSLFPARAFVRDSPVIYNK----------TLSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRAR 306 (649)
T ss_dssp EETTSCEEEEECCCSSCBCEEEEEEECCT----------TTTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHT
T ss_pred EeCCCcEEeeeecccCcccCcceeeEecc----------cccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhc
Confidence 99999999999998776667789999865 246799988888877 999999998 4688999999
Q ss_pred CceEEEecC-C-CCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEE-eeeeeecCCCCCcccccCCCCCCCCCCCCCC
Q 036374 377 GALGSIQPA-S-TIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHI-LRSMAIKDDAAPVVHPFSGRGPSKITPDIIK 453 (706)
Q Consensus 377 Ga~g~i~~~-~-~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i-~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~K 453 (706)
|+.|+|++| . ....+.+.+|.++++.++++.|++|++++.+++++| +..+..+..+.+.++.||||||+...++++|
T Consensus 307 Ga~g~i~~n~~~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~ilK 386 (649)
T 3i6s_A 307 LKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISK 386 (649)
T ss_dssp CSEEEEECCCGGGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSCS
T ss_pred CceEEEEecCccccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCCCCccC
Confidence 999999999 3 446678899999999999999999999999999999 8888888888999999999999987789999
Q ss_pred CceEecCCcEEecccCCCCCCCCCCCC-cccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCC
Q 036374 454 PDISAPAVQILAAYTGGWGPSNHPMDH-RFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTV 532 (706)
Q Consensus 454 PDi~APG~~I~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~ 532 (706)
|||+|||++|+++++....+.....+. ....|..+||||||||||||+||||||+||+|||++||++||+||+++....
T Consensus 387 PDI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g 466 (649)
T 3i6s_A 387 PDILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTR 466 (649)
T ss_dssp CCEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTS
T ss_pred CeEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCC
Confidence 999999999999998754433322222 3467999999999999999999999999999999999999999999876532
Q ss_pred ---------CCCCCCCCCCCCCCccccCCcCcccccChhhHHhhhccCCCCcccEEEecCCCCC--CCCCCCCCCCCCCC
Q 036374 533 ---------NRGREFDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNSS--CPEGTSIATKDLNL 601 (706)
Q Consensus 533 ---------~~~~~~~~G~G~id~~~Al~~~lv~~~~~~~~~~~lc~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lN~ 601 (706)
.++.++.||+|+||+.+|++||||||.+.+||++|||++||+.++|++|+++++. |+. ..++|||
T Consensus 467 ~~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~~~~C~~----~~~~lNy 542 (649)
T 3i6s_A 467 KPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSN----PSADLNY 542 (649)
T ss_dssp SBCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTSCC-CCC----CCCCCCC
T ss_pred CcccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCCcCCCCC----chhhcCC
Confidence 2457889999999999999999999999999999999999999999999998888 975 3689999
Q ss_pred CeEEEEe-ecCCCce--EEEEEEEEeccCCCeeEEEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEEEecccCCCceE
Q 036374 602 PSIAAQV-EVHNPFS--IKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDGAILQANHTV 678 (706)
Q Consensus 602 psi~~~~-~~~~~~~--~~~~rtv~n~g~~~~ty~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~ 678 (706)
|||++.. +.+.... ++|+|||||||+...+|+++++. |+|++|+|+|++|+|++.+|+++|+|||+......+.+.
T Consensus 543 Ps~~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~-p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~~~~~ 621 (649)
T 3i6s_A 543 PSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKA-PKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRN 621 (649)
T ss_dssp SSEEEEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEEC-CTTEEEEEESSEEEECC-CCEEEEEEEEEECCC---CCC
T ss_pred CcEEeecccCCCCccceEEEEEEEEEeCCCCcEEEEEEec-CCCCEEEEECCEEEEecCCCEEEEEEEEEecccCCCceE
Confidence 9999998 4431012 89999999999988999999999 999999999999999889999999999998765566789
Q ss_pred EEEEEEEc--CCceEEeeEEEEEe
Q 036374 679 SASLLWSD--GTHNVRSPIVVYTN 700 (706)
Q Consensus 679 ~G~i~~~~--~~~~v~~P~~~~~~ 700 (706)
||+|+|+| ++|.||+||+|++.
T Consensus 622 fg~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 622 VGSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp EEEEEEEETTSCCEEEEEEEEEEC
T ss_pred EEEEEEEcCCCCeEEEEeEEEEEc
Confidence 99999998 99999999999875
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-114 Score=997.99 Aligned_cols=609 Identities=46% Similarity=0.776 Sum_probs=523.3
Q ss_pred ccCCccccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCC---
Q 036374 81 TTRSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSG--- 157 (706)
Q Consensus 81 ~~~s~~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~--- 157 (706)
++++|+|+|++..+|.++.+|+||+|||||||||++||+|+++++++++.+|+| .|+.+.+|.||+|+++.++|..
T Consensus 1 tt~s~~flGl~~~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g-~~~~~~~~~~n~k~ig~~~~~~~~~ 79 (621)
T 3vta_A 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKG-TCETSNNFRCNRKIIGARSYHIGRP 79 (621)
T ss_dssp CCSHHHHTTCCTTCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCC-CBCCSSSCCCCSSEEEEEECCCSSS
T ss_pred CCCChhHcCCCccccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCccccccc-ccccCCCcccCcceeeeeecccCCc
Confidence 579999999997789989999999999999999999999999999999999999 9999999999999999999842
Q ss_pred -----CCCcccccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCC
Q 036374 158 -----INTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGV 232 (706)
Q Consensus 158 -----~~~~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv 232 (706)
..+|+|. +||||||||||||+...+.+..|++.+.++||||+|+|++||+|+ ..+|..+++++||++|+++|+
T Consensus 80 ~~~~~~~~p~D~-~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~-~~g~~~~di~~a~~~a~~~g~ 157 (621)
T 3vta_A 80 ISPGDVNGPRDT-NGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCW-NDGCSDTDILAAYDDAIADGV 157 (621)
T ss_dssp CCTTCCSSSBCS-SSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEE-TTEECHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCCCCCC-CcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeec-CCCCCHHHHHHHHHHHHHhCC
Confidence 3567888 999999999999998888888888888999999999999999999 778999999999999999999
Q ss_pred cEEEEcccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEe
Q 036374 233 DIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLV 312 (706)
Q Consensus 233 ~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~ 312 (706)
||||||||+....++..+++++++++|.++|+++|+||||+|+...++++.+||+++|++++.++.|...+.++++..+.
T Consensus 158 dVin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~~~~~~~~~~~~ 237 (621)
T 3vta_A 158 DIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQ 237 (621)
T ss_dssp SEEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEEEEEETTSCEEE
T ss_pred CEEEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccccceeeEEeccCceee
Confidence 99999999986667788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEee--cccchheeecCceEEEecC-CCCC
Q 036374 313 GDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDN--FRGDVETFRVGALGSIQPA-STIM 389 (706)
Q Consensus 313 g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~--~~k~~~~~~~Ga~g~i~~~-~~~~ 389 (706)
+.++.. +....++++.................|.+..++..+++|||++|++ ..+.......|+.++|+++ ..+.
T Consensus 238 ~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~~~~~~~~~~~~Ga~gvi~~~~~~~~ 315 (621)
T 3vta_A 238 GVSINT--FDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLDGAAGVLMTSNTRDY 315 (621)
T ss_dssp EBCCCC--SCCEEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSCCCHHHHHHHHTTCSEEEEECSCCSS
T ss_pred eeeccc--CCCcccccccccccccccccccccccccccccccccccceEEEEecCCChhHHhhhhcceeEEEEEecCCCc
Confidence 887754 3456778887776655444556678899999999999999999998 4556677788999999999 5667
Q ss_pred CCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccC
Q 036374 390 SHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTG 469 (706)
Q Consensus 390 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~ 469 (706)
.+.+.+|...++..++..+..|+..+......+.......+...+.++.||||||+...++++||||+|||++|+|+++.
T Consensus 316 ~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~APG~~Ilsa~~~ 395 (621)
T 3vta_A 316 ADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPS 395 (621)
T ss_dssp CCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEEECTTCCCBCTTSCCCSCTTCTTSCSCCEEEECSSEEEECCS
T ss_pred ccccccceEEECHHHHHHHHHHHhccCCcceEEecceEeccCCCCceeeecCCCCCCCCCCeeccccccCCcceEeecCc
Confidence 78899999999999999999999999999888855555556778999999999999877899999999999999999986
Q ss_pred CCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccc
Q 036374 470 GWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVK 549 (706)
Q Consensus 470 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~ 549 (706)
...... ......|..+||||||||||||+||||||+||+|+|++||++||+||+++.....+..+++||+|+||+.+
T Consensus 396 ~~~~~~---~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~~~~~~~~~~GaG~v~~~~ 472 (621)
T 3vta_A 396 VAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSGHVNPLK 472 (621)
T ss_dssp SSCBTT---BCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTTTCTTTHHHHTTCBCCHHH
T ss_pred cccccC---cCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCcccccCCCCCchhcCCCccCHHH
Confidence 543222 23346799999999999999999999999999999999999999999998877778889999999999999
Q ss_pred cCCcCcccccChhhHHhhhccCCCCcccEEEecCCCCCCCCCCCCCCCCCCCCeEEEEeecCCCceEEEEEEEEeccCCC
Q 036374 550 ATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNSSCPEGTSIATKDLNLPSIAAQVEVHNPFSIKFLRTVTNVGLAN 629 (706)
Q Consensus 550 Al~~~lv~~~~~~~~~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~psi~~~~~~~~~~~~~~~rtv~n~g~~~ 629 (706)
|++||||||.+..||+.|||.++|+..+++.++++...|+........+||||||++........+++|+|||||||+..
T Consensus 473 A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~~ 552 (621)
T 3vta_A 473 AVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQA 552 (621)
T ss_dssp HSCCSEECCCCGGGCC-----------------------------CGGGSCCSSEEEECCSSCCEEEEEEEEEEECSSSC
T ss_pred hcCCCeEeecccchhhhhhcccCCCchhheeeeccccccCCCCcCcccccccccEEEEccCCCceEEEEEEEEEccCCCC
Confidence 99999999999999999999999999999999999889988766778899999999976554446899999999999999
Q ss_pred eeEEEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEEEecccCCCceEEEEEEEEcCCceEEeeEEEEEe
Q 036374 630 TTYKAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDGAILQANHTVSASLLWSDGTHNVRSPIVVYTN 700 (706)
Q Consensus 630 ~ty~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~~~~~v~~P~~~~~~ 700 (706)
.||+++++. |+|++|+|+|++|+|++.+|+++|+|||+.. ..+.++||+|+|+|++|.||+||+|+..
T Consensus 553 ~ty~~~v~~-p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~--~~~~~~~g~l~w~d~~h~Vr~Pi~v~~~ 620 (621)
T 3vta_A 553 STYRAMISA-PQGLTISVNPNVLSFNGLGDRKSFTLTVRGS--IKGFVVSASLVWSDGVHYVRSPITITSL 620 (621)
T ss_dssp EEEEEEEEC-CSSEEEEEESSEEEECSTTCEEEEEEEEEEC--CCSSEEEEEEEEECSSCCCEEEEEEECC
T ss_pred eEEEEEEEC-CCCcEEEEecCEEEEcCCCcEEEEEEEEEec--CCCceEEEEEEEEcCCEEEEeCEEEEEe
Confidence 999999999 9999999999999998889999999999864 4678999999999999999999999863
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-80 Score=744.71 Aligned_cols=529 Identities=20% Similarity=0.213 Sum_probs=415.7
Q ss_pred cccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcc-------------cccCceeEee
Q 036374 86 DFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQN-------------FTCNNKIIGA 152 (706)
Q Consensus 86 ~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~-------------f~~n~k~ig~ 152 (706)
++++++ .+|..+.+|+||+|||||||||++||+|.+ +..|++ .|..+++ ..||+|+++.
T Consensus 2 d~i~~~-~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~------~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~ 73 (926)
T 1xf1_A 2 DPSQVK-TLQEKAGKGAGTVVAVIDAGFDKNHEAWRL------TDKTKA-RYQSKEDLEKAKKEHGITYGEWVNDKVAYY 73 (926)
T ss_dssp CTTCCH-HHHHHHCSCTTCEEEEEESCCTTCCCCCSC------CSCCCS-SCCHHHHHHHHHHTTTCCCCBCCSSSCCEE
T ss_pred CccccH-HHHhccCCCCCcEEEEEecCCCCCCHhHcC------CCCCcc-cccchhhhcccccccCcccccccCccccee
Confidence 567888 899999999999999999999999999984 345666 6654322 2699999999
Q ss_pred eecCCCCCcccccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC--CCHHHHHHHHHHHHHC
Q 036374 153 RYYSGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP--CNEADILAAFDDAIAD 230 (706)
Q Consensus 153 ~~~~~~~~~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~ai~~ 230 (706)
++|....+..|. .||||||||||||+...+.+. .+.+.||||+|+|+++|+|+ ..+ +..+++++||++|+++
T Consensus 74 ~~~~~~~~~~D~-~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~-~~g~~~~~~~i~~Ai~~Ai~~ 147 (926)
T 1xf1_A 74 HDYSKDGKTAVD-QEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEI-VNGLADYARNYAQAIRDAINL 147 (926)
T ss_dssp EESCCCSCCCCS-STTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCC-CSCHHHHHHHHHHHHHHHHHT
T ss_pred eccccCCCCCCC-CCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeec-CCCCCCcHHHHHHHHHHHHHh
Confidence 998643333477 999999999999987543321 23459999999999999998 444 5567899999999999
Q ss_pred CCcEEEEcccCCCC-CCChhhHHHHHHHHHHhCCcEEEEecCCCCCC-------------CCCccc--CCCceEEEcccc
Q 036374 231 GVDIILTGATYGFA-FDFAEDAVAIGAFHAMEKGILTAVPTGNMGPK-------------PASTVV--VAPWILTVAGSS 294 (706)
Q Consensus 231 gv~VIN~SlG~~~~-~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~-------------~~~~~~--~~p~vitVga~~ 294 (706)
|++|||||||+... .....+++..++++|.++|++||+||||+|+. ..++.+ .+||+|+|||++
T Consensus 148 gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vitVgA~~ 227 (926)
T 1xf1_A 148 GAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYS 227 (926)
T ss_dssp TCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSEEEEEEB
T ss_pred CCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceEEEeccc
Confidence 99999999998732 34456788899999999999999999999963 223333 489999999999
Q ss_pred CCcceeeeEEe-CCCeEEeeeeccC-CCC-CCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEee-----
Q 036374 295 IDRPFIDKAIL-GDGTTLVGDAVNP-FTM-KGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDN----- 366 (706)
Q Consensus 295 ~~~~~~~~~~~-~~~~~~~g~~~~~-~~~-~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~----- 366 (706)
.++.+...+.+ +++....+.++.. ..+ ....+++++... .|.+..+ .+++|||++|+|
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~------------g~~~~~~--~~v~Gkivl~~rg~~~~ 293 (926)
T 1xf1_A 228 PDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR------------GTKEDDF--KDVKGKIALIERGDIDF 293 (926)
T ss_dssp CSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT------------SCSTTTT--TTCTTSEEEEECCSSCH
T ss_pred cccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC------------CCCccch--hhcCCeEEEEECCCCCH
Confidence 99998888877 5554333333321 111 356789988643 3665555 689999999998
Q ss_pred cccchheeecCceEEEecC-CCC-----CCCCcCccEEEechhhHHHHHHHHhcCCCcEEEE-eeeeeecCCCCCccccc
Q 036374 367 FRGDVETFRVGALGSIQPA-STI-----MSHPTPFPTVILKMEDFERVKLYINSTEKPQVHI-LRSMAIKDDAAPVVHPF 439 (706)
Q Consensus 367 ~~k~~~~~~~Ga~g~i~~~-~~~-----~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i-~~~~~~~~~~~~~~a~f 439 (706)
.+|..+++++|+.|+|++| ... ......+|+.+++.++++.|.+ ....++++ .....+.....+.++.|
T Consensus 294 ~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~~~~ti~~~~~~~~~~~~~~~~~a~F 369 (926)
T 1xf1_A 294 KDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----NPQKTITFNATPKVLPTASGTKLSRF 369 (926)
T ss_dssp HHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----CSSCEEEECSSCEEEECSSCSBCCTT
T ss_pred HHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh----CCceEEEecccceecccCCcceeccc
Confidence 4678899999999999999 321 3456789999999999998874 45566666 22234555667899999
Q ss_pred CCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHH----hhCCCCCHH
Q 036374 440 SGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVR----SFHPDWSPS 515 (706)
Q Consensus 440 SS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~----~~~P~lsp~ 515 (706)
|||||+. ++++||||+|||++|+++++. +.|..+||||||||||||+||||+ +.||+|+|+
T Consensus 370 SSrGp~~--~~~lKPDI~APG~~I~sa~~~-------------~~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P~~sp~ 434 (926)
T 1xf1_A 370 SSWGLTA--DGNIKPDIAAPGQDILSSVAN-------------NKYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPS 434 (926)
T ss_dssp SCCCBCT--TSCBSCCEEEECCCEEESSSC-------------SSSCEEESCTTHHHHHHHHHHHHHHHHHHSSSSSHHH
T ss_pred cCCCCCC--CCccCceEECCCCCEEeeccC-------------CcceecCccchhHHHHHHHHHHHHHHHhccCCCCCHH
Confidence 9999997 999999999999999999973 469999999999999999999995 569999999
Q ss_pred H----HHHHHHhcccccCCCC--CCCCCCCCCCCCCCccccCCcCcccccChhhHHhhhccCCCCcccEEEecCCCCCCC
Q 036374 516 S----IKSALMTTALLMNGTV--NRGREFDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYSVNKIRLISGDNSSCP 589 (706)
Q Consensus 516 ~----ik~~L~~TA~~~~~~~--~~~~~~~~G~G~id~~~Al~~~lv~~~~~~~~~~~lc~~~~~~~~~~~~~~~~~~~~ 589 (706)
| ||++||+||+++.... ....+++||+|+||+.+|+++.+ |||..+++..
T Consensus 435 ~~~~~Iks~L~~TA~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~------------- 490 (926)
T 1xf1_A 435 ERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSS------------- 490 (926)
T ss_dssp HHHHHHHHHHHHHSBCCEEGGGTEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCS-------------
T ss_pred HHHHHHHHHHHhcCCCcccCCCCccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcc-------------
Confidence 7 9999999999875532 23467899999999999999954 6787654321
Q ss_pred CCCCCCCCCCCCCeEEEEeecCCCceEEEEEEEEeccCC--CeeEEEEEeec-CcceEEEEEcCeEEEe-------eCCc
Q 036374 590 EGTSIATKDLNLPSIAAQVEVHNPFSIKFLRTVTNVGLA--NTTYKAEVKTT-SIDVKINVTPDALSFE-------SVND 659 (706)
Q Consensus 590 ~~~~~~~~~lN~psi~~~~~~~~~~~~~~~rtv~n~g~~--~~ty~~~~~~~-~~g~~v~v~p~~~~~~-------~~g~ 659 (706)
+|.++.+. ..++++|||+|+|+. ..+|++.+... |.+..++|+|..|.+. ++|+
T Consensus 491 -------------~i~l~~~~---~~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv~ag~ 554 (926)
T 1xf1_A 491 -------------KVHLNNVS---DKFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITIPANS 554 (926)
T ss_dssp -------------CEEEEEEC---SEEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEECTTE
T ss_pred -------------eeeccccC---ccEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEECCCC
Confidence 34455444 278999999999985 45677777653 6788888887755443 5699
Q ss_pred EEEEEEEEEecc--------cCCCceEEEEEEEE--cCCce-EEeeEEEEEec
Q 036374 660 KKSFVVTVDGAI--------LQANHTVSASLLWS--DGTHN-VRSPIVVYTNQ 701 (706)
Q Consensus 660 ~~~~~vt~~~~~--------~~~~~~~~G~i~~~--~~~~~-v~~P~~~~~~~ 701 (706)
+++|+|||+... .+.+.++||+|+|+ ++.|. ||+||+++..+
T Consensus 555 ~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~g~ 607 (926)
T 1xf1_A 555 SKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFRGD 607 (926)
T ss_dssp EEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEESC
T ss_pred EEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEecC
Confidence 999999999852 24567899999998 56664 99999998754
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-61 Score=540.81 Aligned_cols=360 Identities=24% Similarity=0.358 Sum_probs=286.3
Q ss_pred EEEEEecCCCCCCCCchhHHHHHHHhccCcccCCccEEEEecceeeEEEEEcCHHHHHHH-----------hcCCCeeEE
Q 036374 3 VCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQNRI-----------SRMDGIVSV 71 (706)
Q Consensus 3 ~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L-----------~~~~~V~~v 71 (706)
.|||.|++... .+..+.+++.+ +.+++++|+ .|+||+++++.+++++| +++|+|++|
T Consensus 37 ~~iV~~~~~~~-----~~~~~~~~~~~------g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v 104 (539)
T 3afg_A 37 STIIMFDNQAD-----KEKAVEILDFL------GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFI 104 (539)
T ss_dssp EEEEEESSHHH-----HHHHHHHHHHH------TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEE
T ss_pred EEEEEECCCCC-----HHHHHHHHHhc------CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEE
Confidence 59999986432 11222222322 358999994 79999999999999999 899999999
Q ss_pred Ecccccccccc-----CCccccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccC
Q 036374 72 FPSKTLQLQTT-----RSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCN 146 (706)
Q Consensus 72 ~~~~~~~~~~~-----~s~~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n 146 (706)
++++.+++... +....++++ .+|..+.+|+||+|||||||||++||+|.+
T Consensus 105 ~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~G~gv~VaViDtGid~~Hpdl~~------------------------ 159 (539)
T 3afg_A 105 QEDYVVKVAVETEGLDESAAQVMAT-NMWNLGYDGSGITIGIIDTGIDASHPDLQG------------------------ 159 (539)
T ss_dssp EECCEEECC-----------CCBCS-CCBCCSCCCTTCEEEEEESBCCTTSGGGTT------------------------
T ss_pred EecccccccCccccCCccccccCcH-hHHhcCCCCCCcEEEEEecCCCCCChHHhC------------------------
Confidence 99998876432 234556777 899999999999999999999999999963
Q ss_pred ceeEeeeecC-CCCCcccccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHH
Q 036374 147 NKIIGARYYS-GINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFD 225 (706)
Q Consensus 147 ~k~ig~~~~~-~~~~~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~ 225 (706)
++++.++|. +..++.|. +||||||||||||+... ..|.+.||||+|+|+++|++++...++.+++++||+
T Consensus 160 -~i~~~~d~~~~~~~~~D~-~gHGThVAgiiag~~~~-------~~g~~~GvAp~A~l~~~kv~~~~g~~~~~~i~~ai~ 230 (539)
T 3afg_A 160 -KVIGWVDFVNGKTTPYDD-NGHGTHVASIAAGTGAA-------SNGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVD 230 (539)
T ss_dssp -TEEEEEETTTCCSSCCBS-SSHHHHHHHHHHCCCGG-------GTTTTCCSCTTCEEEEEECSCTTSEEEHHHHHHHHH
T ss_pred -CEeeeEECCCCCCCCCCC-CCCHHHHHHHHhCcCcc-------CCCCEEEECCCCEEEEEEeecCCCCcCHHHHHHHHH
Confidence 123333442 23567788 99999999999987432 123358999999999999998333378899999999
Q ss_pred HHHHC----CCcEEEEcccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCC--cccCCCceEEEccccCCcce
Q 036374 226 DAIAD----GVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPAS--TVVVAPWILTVAGSSIDRPF 299 (706)
Q Consensus 226 ~ai~~----gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~--~~~~~p~vitVga~~~~~~~ 299 (706)
||+++ |++|||||||... .....+++..+++++.++|+++|+||||+|+...+ .+...+++|+|||++.+
T Consensus 231 ~a~~~~~~~g~~Vin~SlG~~~-~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~--- 306 (539)
T 3afg_A 231 WAVQNKDKYGIKVINLSLGSSQ-SSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKY--- 306 (539)
T ss_dssp HHHHTHHHHTEEEEEECCCCCS-CCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEECTT---
T ss_pred HHHhhhhhcCCcEEEeCCCCCC-CCccchHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEeeecCC---
Confidence 99985 9999999999873 23456788999999999999999999999986543 45678999999987532
Q ss_pred eeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCce
Q 036374 300 IDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGAL 379 (706)
Q Consensus 300 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~ 379 (706)
T Consensus 307 -------------------------------------------------------------------------------- 306 (539)
T 3afg_A 307 -------------------------------------------------------------------------------- 306 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEec
Q 036374 380 GSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAP 459 (706)
Q Consensus 380 g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~AP 459 (706)
+.+++||||||+. ++++||||+||
T Consensus 307 ------------------------------------------------------~~~a~fSs~Gp~~--~~~~kpdi~AP 330 (539)
T 3afg_A 307 ------------------------------------------------------DVITDFSSRGPTA--DNRLKPEVVAP 330 (539)
T ss_dssp ------------------------------------------------------SCBCSSSCCCCCT--TCBCCCSEEEE
T ss_pred ------------------------------------------------------cccccccCCCCCC--CCCCcccEecC
Confidence 3578999999998 89999999999
Q ss_pred CCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCC
Q 036374 460 AVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFD 539 (706)
Q Consensus 460 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~ 539 (706)
|++|+++++..... .+.....|..++|||||||||||+||||+|++|+|++++||++|++||+++... ...++.
T Consensus 331 G~~I~s~~~~~~~~----~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~~~~~--~~~~~~ 404 (539)
T 3afg_A 331 GNWIIAARASGTSM----GQPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPD--EIADIA 404 (539)
T ss_dssp CSSEEEECCTTCCC----SEECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSBCSSGG--GCSBTT
T ss_pred cCCEEeeccCCCCC----CCCCcccccccCchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC--CCCccC
Confidence 99999998653210 011123599999999999999999999999999999999999999999987532 125678
Q ss_pred CCCCCCCccccCCcC
Q 036374 540 YGSGHIDPVKATNPG 554 (706)
Q Consensus 540 ~G~G~id~~~Al~~~ 554 (706)
||+|+||+.+|++..
T Consensus 405 ~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 405 YGAGRVNAYKAAYYD 419 (539)
T ss_dssp TBTCBCCHHHHHTGG
T ss_pred ccCCccCHHHHhhhc
Confidence 999999999999863
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-58 Score=500.30 Aligned_cols=340 Identities=21% Similarity=0.270 Sum_probs=273.9
Q ss_pred CeEEEEEecCCCCCCCCchhHHHHHHHhccCcccCCccEEEEecceeeEEEEEcCHHHHHHHhcCCCeeEEEcccccccc
Q 036374 1 MQVCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQNRISRMDGIVSVFPSKTLQLQ 80 (706)
Q Consensus 1 ~~~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~~~V~~v~~~~~~~~~ 80 (706)
+.+|||.|++... . +.+++. .+.+++++|. .+++|+++++.+++++|+++|+|++|++++.++++
T Consensus 2 ~~~~iV~~~~~~~----~----~~~~~~------~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~ 66 (395)
T 2z2z_A 2 TIRVIVSVDKAKF----N----PHEVLG------IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLL 66 (395)
T ss_dssp EEEEEEEECTTTC----C----HHHHHH------TTCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEEC
T ss_pred cEEEEEEECCCcc----H----HHHHHH------cCCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeeccc
Confidence 3689999998632 1 122222 3468999995 59999999999999999999999999999988764
Q ss_pred cc--------------CCc--cccCCccccccCCCCCCC--cEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcc
Q 036374 81 TT--------------RSW--DFMGFPETVKREPTVESD--MIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQN 142 (706)
Q Consensus 81 ~~--------------~s~--~~ig~~~~~~~~~~~G~G--VvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~ 142 (706)
.. ..| +.++++ .+|..+ +|+| |+|||||||||++||+|.+ +...+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~w~~~~i~~~-~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~-------------~~~~~~~ 131 (395)
T 2z2z_A 67 GKPSWLGGGSTQPAQTIPWGIERVKAP-SVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAA-------------NIAWCVS 131 (395)
T ss_dssp CEECC------CCSCCCCHHHHHTTCG-GGGGTC-SSCCTTCEEEEEESCBCTTCTTTGG-------------GEEEEEE
T ss_pred CCCCcccccccCccccCCcchhhcCHH-HHHhhc-CCCCCcEEEEEEcCCCCCCChhHhh-------------ccccCcc
Confidence 21 122 236677 899988 9999 9999999999999999974 2222233
Q ss_pred cccCceeEeeeecCCCCCcccccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC-CCHHHHH
Q 036374 143 FTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-CNEADIL 221 (706)
Q Consensus 143 f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~ 221 (706)
|..+. + +. ...++.|. .||||||||||+|.. ++ .| +.||||+|+|+++|+++ ..+ ++.++++
T Consensus 132 ~~~~~-~-~~----~~~~~~d~-~gHGT~vAgiia~~~-n~---~g-----~~GvAp~a~l~~~kv~~-~~g~~~~~~i~ 194 (395)
T 2z2z_A 132 TLRGK-V-ST----KLRDCADQ-NGHGTHVIGTIAALN-ND---IG-----VVGVAPGVQIYSVRVLD-ARGSGSYSDIA 194 (395)
T ss_dssp CGGGC-C-BC----CHHHHBCS-SSHHHHHHHHHHCCC-SS---SS-----CCCSSTTCEEEEEECSC-TTSEEEHHHHH
T ss_pred ccCCc-c-cC----CCCCCCCC-CCCHHHHHHHHHeec-CC---Cc-----eEEECCCCEEEEEEEec-CCCCccHHHHH
Confidence 31110 0 00 00124577 999999999999973 11 12 38999999999999998 444 7889999
Q ss_pred HHHHHHHHC--------------------CCcEEEEcccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcc
Q 036374 222 AAFDDAIAD--------------------GVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTV 281 (706)
Q Consensus 222 ~ai~~ai~~--------------------gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~ 281 (706)
+||+||+++ +++|||||||... ....+..++.++.++|+++|+||||+|......+
T Consensus 195 ~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~P 270 (395)
T 2z2z_A 195 IGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA----DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYP 270 (395)
T ss_dssp HHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBT
T ss_pred HHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCC----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCc
Confidence 999999998 9999999999872 2356777888899999999999999998776778
Q ss_pred cCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccE
Q 036374 282 VVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKI 361 (706)
Q Consensus 282 ~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gki 361 (706)
...+++|+|||++.+
T Consensus 271 a~~~~vi~Vga~~~~----------------------------------------------------------------- 285 (395)
T 2z2z_A 271 AAYPEVIAVGAIDSN----------------------------------------------------------------- 285 (395)
T ss_dssp TTSTTEEEEEEECTT-----------------------------------------------------------------
T ss_pred cCCCCEEEEEEecCC-----------------------------------------------------------------
Confidence 888999999997643
Q ss_pred EEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCC
Q 036374 362 LLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSG 441 (706)
Q Consensus 362 vl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS 441 (706)
+.+++||+
T Consensus 286 ------------------------------------------------------------------------~~~a~fS~ 293 (395)
T 2z2z_A 286 ------------------------------------------------------------------------DNIASFSN 293 (395)
T ss_dssp ------------------------------------------------------------------------SCBCTTSC
T ss_pred ------------------------------------------------------------------------CCCCcccC
Confidence 45789999
Q ss_pred CCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCC-----------
Q 036374 442 RGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHP----------- 510 (706)
Q Consensus 442 ~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P----------- 510 (706)
+|| +|+|||++|+++++. +.|..++|||||||||||++|||+|++|
T Consensus 294 ~G~----------~v~APG~~i~s~~~~-------------~~y~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~~ 350 (395)
T 2z2z_A 294 RQP----------EVSAPGVDILSTYPD-------------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGT 350 (395)
T ss_dssp SSC----------SEEEECSSEEEEETT-------------TEEEEEESHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCC
T ss_pred CCC----------CEEeCCCCeeeecCC-------------CceEecCCHHHHHHHHHHHHHHHHHhCcccccccccccc
Confidence 997 679999999999873 5699999999999999999999999999
Q ss_pred --CCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCCcC
Q 036374 511 --DWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATNPG 554 (706)
Q Consensus 511 --~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~~~ 554 (706)
.|++.+||++|++||+++.. +..+..||||+||+.+|++..
T Consensus 351 ~~~ls~~~v~~~L~~tA~~~~~---~g~~~~~G~G~vd~~~A~~~a 393 (395)
T 2z2z_A 351 FDDISKNTVRGILHITADDLGP---TGWDADYGYGVVRAALAVQAA 393 (395)
T ss_dssp TTCCSSSSHHHHHHHHSBCCSS---SSSBTTTBTCBCCHHHHHHHH
T ss_pred ccCCCHHHHHHHHHhhccccCC---CCCCCCccCceeCHHHHHHHH
Confidence 99999999999999998864 346789999999999998753
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-56 Score=496.24 Aligned_cols=331 Identities=20% Similarity=0.235 Sum_probs=262.3
Q ss_pred CccEEEEecceeeEEEEEcCHHHHHHHhc-CCCeeEEEccccccccccC-------------CccccCC--ccccccCCC
Q 036374 36 NDVLVRSYERSFNGFAAKLTDEEQNRISR-MDGIVSVFPSKTLQLQTTR-------------SWDFMGF--PETVKREPT 99 (706)
Q Consensus 36 ~~~i~~~y~~~~ng~s~~~~~~~~~~L~~-~~~V~~v~~~~~~~~~~~~-------------s~~~ig~--~~~~~~~~~ 99 (706)
+.++++.| ..|++|+++++++++++|++ +|+|++|++++.+++.... .|.+..+ +..+|..+.
T Consensus 65 g~~v~~~~-~~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~~ 143 (471)
T 3t41_A 65 SLNVVYNI-PELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDDLP 143 (471)
T ss_dssp TCEEEEEE-GGGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGGCC
T ss_pred CCEEEEec-CCccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccCcHHHHhccC
Confidence 45788888 55999999999999999999 9999999999888775432 2322222 226899899
Q ss_pred CCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeee-cCC-CCCcccccCCCcccceeecc
Q 036374 100 VESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARY-YSG-INTTREYQLGHGTHMASIAA 177 (706)
Q Consensus 100 ~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~-~~~-~~~~~D~~~gHGThVAgi~a 177 (706)
+|+||+|||||||||++||+|.+.- |.+ . .+|.....+.+... ..+ ...+.|. .||||||||||+
T Consensus 144 ~G~gv~VaViDtGid~~Hp~~~~~~-------~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~d~-~gHGT~vAgiia 210 (471)
T 3t41_A 144 KHANTKIAIIDTGVMKNHDDLKNNF-------STD-S----KNLVPLNGFRGTEPEETGDVHDVNDR-KGHGTMVSGQTS 210 (471)
T ss_dssp SSCCCCEEEEESCCCTTCTTTTTTB-------CTT-C----EECCCTTCGGGCCTTCCCCTTCCCCS-SSHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCCChhHhcCc-------ccC-C----cccccCCCccCCCcccCCCCCCCcCC-CCccchhhheee
Confidence 9999999999999999999998531 111 0 11111110000000 011 2345677 999999999999
Q ss_pred cccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCC-----------
Q 036374 178 GNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFD----------- 246 (706)
Q Consensus 178 g~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~----------- 246 (706)
|+.. +.||||+|+|+++|+++ ...+..+++++||++|+++|++|||||||......
T Consensus 211 a~g~------------~~GvAp~a~l~~~kv~~-~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~ 277 (471)
T 3t41_A 211 ANGK------------LIGVAPNNKFTMYRVFG-SKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDE 277 (471)
T ss_dssp CBSS------------SBCSSTTSCEEEEECCS-SSCCCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEESSC
T ss_pred cCCc------------eeEECCCCeEEEEEecc-CCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCcccccccccccc
Confidence 8631 38999999999999999 66688999999999999999999999999741111
Q ss_pred -ChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCC------------------cccCCCceEEEccccCCcceeeeEEeCC
Q 036374 247 -FAEDAVAIGAFHAMEKGILTAVPTGNMGPKPAS------------------TVVVAPWILTVAGSSIDRPFIDKAILGD 307 (706)
Q Consensus 247 -~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~------------------~~~~~p~vitVga~~~~~~~~~~~~~~~ 307 (706)
...+.+..++..+.++|++||+||||+|..... .++..+++|+|||++.+
T Consensus 278 ~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~~~----------- 346 (471)
T 3t41_A 278 KVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQK----------- 346 (471)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEEEEEECTT-----------
T ss_pred chhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCeEEEEeeCCC-----------
Confidence 234567888888999999999999999976432 55678899999987643
Q ss_pred CeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCC
Q 036374 308 GTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPAST 387 (706)
Q Consensus 308 ~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~ 387 (706)
T Consensus 347 -------------------------------------------------------------------------------- 346 (471)
T 3t41_A 347 -------------------------------------------------------------------------------- 346 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCc-----
Q 036374 388 IMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQ----- 462 (706)
Q Consensus 388 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~----- 462 (706)
+.+++||++||+. |||+|||++
T Consensus 347 ----------------------------------------------~~~a~fS~~G~~~-------~di~APG~~i~~~~ 373 (471)
T 3t41_A 347 ----------------------------------------------SNLSEFSNFGMNY-------TDIAAPGGSFAYLN 373 (471)
T ss_dssp ----------------------------------------------SSBCTTCCBCTTT-------CCEEEECCCCHHHH
T ss_pred ----------------------------------------------CCCCCccCCCCCC-------CeEEecCCCccccc
Confidence 4578999999963 599999987
Q ss_pred -----------------EEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCC-CCCHHHHHHHHHhc
Q 036374 463 -----------------ILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHP-DWSPSSIKSALMTT 524 (706)
Q Consensus 463 -----------------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P-~lsp~~ik~~L~~T 524 (706)
|+++++ .+.|..++|||||||||||++|||+|++| .|+|++||++|++|
T Consensus 374 ~~g~~~~~~~~~~~~~~i~s~~~-------------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~t 440 (471)
T 3t41_A 374 QFGVDKWMNEGYMHKENILTTAN-------------NGRYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQH 440 (471)
T ss_dssp HHHHHHHHHTTTHHHHSEEEECT-------------TSSEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred ccccccccccccccCceeEecCC-------------CCCEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHh
Confidence 888876 35699999999999999999999999999 89999999999999
Q ss_pred ccccCCCCCCCCCCCCCCCCCCccccCCcC
Q 036374 525 ALLMNGTVNRGREFDYGSGHIDPVKATNPG 554 (706)
Q Consensus 525 A~~~~~~~~~~~~~~~G~G~id~~~Al~~~ 554 (706)
|+++.. .++..||||+||+.+|++..
T Consensus 441 A~~~~~----~~~~~~G~G~vd~~~Al~~a 466 (471)
T 3t41_A 441 GTSKNN----KPFSRYGHGELDVYKALNVA 466 (471)
T ss_dssp SBCCSC----CCHHHHTTCBBCHHHHTTTT
T ss_pred CCCCCC----CCcCccccChhCHHHHHHHH
Confidence 998654 56778999999999999864
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-54 Score=491.59 Aligned_cols=367 Identities=20% Similarity=0.212 Sum_probs=271.3
Q ss_pred eEEEEEecCCCCCCCCchhHHHHHHHhccCcccCCccEEEEecceeeEEEEEcCH---H-HHHHHh--cCCCeeEEEccc
Q 036374 2 QVCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTD---E-EQNRIS--RMDGIVSVFPSK 75 (706)
Q Consensus 2 ~~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~---~-~~~~L~--~~~~V~~v~~~~ 75 (706)
.+|||.|++... .+.+.+.+ +.++.+++ ..+++++++++. + .+++|+ ++|+|++|+|+.
T Consensus 32 ~~~IV~~k~~~~--------~~~~~~~~------g~~v~~~~-~~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~vepd~ 96 (671)
T 1r6v_A 32 GKILVGYNDRSE--------VDKIVKAV------NGKVVLEL-PQIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSY 96 (671)
T ss_dssp TEEEEEESSHHH--------HHHHHHHH------TCEEEEEE-GGGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCB
T ss_pred ccEEEEECCCcC--------HHHHHHhc------CCeEEEEc-CCCcEEEEEeCCcCHHHHHHHHHhccCCCceEEecCe
Confidence 479999986321 12222222 34678888 678999999865 3 356676 489999999997
Q ss_pred cccccc----c--------------------------CCc--cccCCcccc-ccCCCCCCCcEEEEEccccCCCCcCCCC
Q 036374 76 TLQLQT----T--------------------------RSW--DFMGFPETV-KREPTVESDMIIGVLDNGIWPESDMFDD 122 (706)
Q Consensus 76 ~~~~~~----~--------------------------~s~--~~ig~~~~~-~~~~~~G~GVvVgVIDtGid~~Hp~f~~ 122 (706)
.+++.. . ..| ..|+++ .+ |+. .+|+||+|||||||||++||+|.+
T Consensus 97 ~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I~~~-~a~w~~-~tG~gV~VAVIDTGVd~~HpdL~~ 174 (671)
T 1r6v_A 97 KRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVT-QQLWEE-ASGTNIIVAVVDTGVDGTHPDLEG 174 (671)
T ss_dssp CCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCC-HHHHHH-CSCTTCEEEEEESCCBTTSGGGTT
T ss_pred EEEeccccccCcccccccccccccccccccccccccccCCchhccCCc-hhhhhc-cCCCCCEEEEEeCCCCCCCccccc
Confidence 665321 0 011 225556 66 887 899999999999999999999975
Q ss_pred CCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeecccccccCCCcccCCCcceeeccCCCe
Q 036374 123 KSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSAR 202 (706)
Q Consensus 123 ~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~ 202 (706)
. ...++++..+..+ ....++.|. +||||||||||||..+ + .| +.||||+|+
T Consensus 175 ~-------------~~~g~~~~~~~~~------p~~~d~~d~-~gHGThVAGiIAa~~n-g---~g-----v~GVAP~A~ 225 (671)
T 1r6v_A 175 Q-------------VIAGYRPAFDEEL------PAGTDSSYG-GSAGTHVAGTIAAKKD-G---KG-----IVGVAPGAK 225 (671)
T ss_dssp T-------------BCCEEEGGGTEEE------CTTCBCCTT-CSHHHHHHHHHHCCCS-S---SS-----CCCSCTTSE
T ss_pred c-------------EEecccccCCCcC------CCCCCCccC-CCcchhhhhhhhccCC-C---Cc-----eEEECCCCE
Confidence 2 1112222111110 001233455 8999999999999731 1 12 389999999
Q ss_pred EEEEEeecC-----CCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCC
Q 036374 203 IAAYRVCHY-----PWP-CNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPK 276 (706)
Q Consensus 203 l~~~kv~~~-----~~g-~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~ 276 (706)
|+++|++++ ..+ ...+.+++||+||+++|++|||||||... ....+..++.+|.++|+++|+||||+|..
T Consensus 226 I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~ 301 (671)
T 1r6v_A 226 IMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG----YSYTMKEAFDYAMEHGVVMVVSAGNNTSD 301 (671)
T ss_dssp EEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSCSSS
T ss_pred EEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC----CCHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 999999983 122 45667999999999999999999999862 23567888889999999999999999976
Q ss_pred C-CCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCC
Q 036374 277 P-ASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDEN 355 (706)
Q Consensus 277 ~-~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~ 355 (706)
. ...++..|++|+|||++.+..
T Consensus 302 ~~~~yPA~~~~VItVgA~d~~g~--------------------------------------------------------- 324 (671)
T 1r6v_A 302 SHHQYPAGYPGVIQVAALDYYGG--------------------------------------------------------- 324 (671)
T ss_dssp CCCCBTTTSTTCEEEEEEEEETT---------------------------------------------------------
T ss_pred CCccCcccCCCeEEEEEEcCCCC---------------------------------------------------------
Confidence 4 456678899999999764310
Q ss_pred cccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCc
Q 036374 356 LVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPV 435 (706)
Q Consensus 356 ~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~ 435 (706)
...
T Consensus 325 -----------------------------------------------------------------------------~~~ 327 (671)
T 1r6v_A 325 -----------------------------------------------------------------------------TFR 327 (671)
T ss_dssp -----------------------------------------------------------------------------EEE
T ss_pred -----------------------------------------------------------------------------cee
Confidence 013
Q ss_pred ccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCC-----CCCCCCcccceeEeccccchhHHHHHHHHHHHhhCC
Q 036374 436 VHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPS-----NHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHP 510 (706)
Q Consensus 436 ~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~-----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P 510 (706)
+++||++||.. ||+|||++|+++++...... ........+.|..++|||||||||||+||||+|++|
T Consensus 328 ~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~~~y~~~sGTSmAAP~VAGvaALl~s~~P 399 (671)
T 1r6v_A 328 VAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFP 399 (671)
T ss_dssp ECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCT
T ss_pred eccccCCCCCe--------eEEecCCCEEeecCCCCccccccccccccccCCCceEEecCccHHHHHHHHHHHHHHHHCC
Confidence 78999999976 99999999999987532110 000111235799999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCCcCcccccChhh
Q 036374 511 DWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATNPGLVYEVLEGD 563 (706)
Q Consensus 511 ~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~~~lv~~~~~~~ 563 (706)
+|+|.+||++|++||+++.. +..+..||+|+||+.+|++..|..+....+
T Consensus 400 ~lt~~~Vr~~L~~TA~~~~~---~g~d~~~G~G~vna~~Al~~~l~~~~~~~~ 449 (671)
T 1r6v_A 400 NAKPWQIRKLLENTAFDFNG---NGWDHDTGYGLVKLDAALQGPLPTQGGVEE 449 (671)
T ss_dssp TCCHHHHHHHHHHHCBCSSS---SSCBTTTBTCBCCHHHHHHCCCCSSSEEEE
T ss_pred CCCHHHHHHHHHHhCcCCCC---CCCCCCcccceeCHHHHhhhhcCCCCCccc
Confidence 99999999999999998765 446778999999999999987766544333
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-56 Score=502.14 Aligned_cols=333 Identities=16% Similarity=0.181 Sum_probs=58.7
Q ss_pred EEEEEecCCCCCCCCchhHHHHHHHhccCcccCCccEEEEecceeeEEEEEcCHHHHHHHhcCCCeeEEEcccccccccc
Q 036374 3 VCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQNRISRMDGIVSVFPSKTLQLQTT 82 (706)
Q Consensus 3 ~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~~~V~~v~~~~~~~~~~~ 82 (706)
.|||+|++... ......+++++.+.+.+ .....++++.|+.+|+||+++++.+++++|+++|+|++|++++.++.+ .
T Consensus 77 ~YIV~lk~~~~-~~~~~~~~~~l~a~~~~-~g~~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~~-~ 153 (692)
T 2p4e_P 77 TYVVVLKEETH-LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQ-S 153 (692)
T ss_dssp EEEEEECTTCC-HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEEC--
T ss_pred cEEEEECCCCC-HHHHHHHHHHHHHHHhh-cccccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccccC-C
Confidence 89999998765 22234444555444332 223468999999999999999999999999999999999999987653 2
Q ss_pred CCccccCCcc-----ccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCC
Q 036374 83 RSWDFMGFPE-----TVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSG 157 (706)
Q Consensus 83 ~s~~~ig~~~-----~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~ 157 (706)
..|.+-.+.. ..|..+.+|+||+|+|||||||++||+|.+... |.+ +++..+. -+. .|
T Consensus 154 ~pWgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~~------~~~~~d~--dg~-~~-- 216 (692)
T 2p4e_P 154 IPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VTD------FENVPEE--DGT-RF-- 216 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcchhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCceE------ecc------cccccCC--CCC-cc--
Confidence 3344322211 368778899999999999999999999975311 111 1110000 000 01
Q ss_pred CCCcccccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHC------C
Q 036374 158 INTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIAD------G 231 (706)
Q Consensus 158 ~~~~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~------g 231 (706)
..++.|. +||||||||||+|+. .||||+|+|+++|++++...++.+++++||+|++++ +
T Consensus 217 ~~~~~D~-~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI~~a~~~~~~~~~g 281 (692)
T 2p4e_P 217 HRQASKC-DSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVG 281 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCC-CCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhhhhcccCC
Confidence 1346677 999999999999873 799999999999999833337888999999999986 8
Q ss_pred CcEEEEcccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCC-cccCCCceEEEccccCCcceeeeEEeCCCeE
Q 036374 232 VDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPAS-TVVVAPWILTVAGSSIDRPFIDKAILGDGTT 310 (706)
Q Consensus 232 v~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~-~~~~~p~vitVga~~~~~~~~~~~~~~~~~~ 310 (706)
++|||||||+. ....+..++.++.++|++||+||||+|.+... .++..+++|+|||++.+...
T Consensus 282 ~~VINmSlGg~-----~s~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~~----------- 345 (692)
T 2p4e_P 282 PLVVLLPLAGG-----YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP----------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEecCCCC-----CcHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCCc-----------
Confidence 99999999976 23456677778899999999999999976543 36678999999998754200
Q ss_pred EeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCC
Q 036374 311 LVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMS 390 (706)
Q Consensus 311 ~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~ 390 (706)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCC
Q 036374 391 HPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGG 470 (706)
Q Consensus 391 ~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~ 470 (706)
...-+.||++||. |||+|||++|+++++..
T Consensus 346 ------------------------------------------a~~ss~fSn~G~~--------vDI~APG~~I~St~~~~ 375 (692)
T 2p4e_P 346 ------------------------------------------VTLGTLGTNFGRC--------VDLFAPGEDIIGASSDC 375 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------------cccccccCCCCCc--------eeEEecCCcEEeeccCC
Confidence 0001238999984 59999999999998742
Q ss_pred CCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 036374 471 WGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALL 527 (706)
Q Consensus 471 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~ 527 (706)
...|..++|||||||||||++|||++++|+|+|++||++|++||.+
T Consensus 376 -----------~~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~tA~~ 421 (692)
T 2p4e_P 376 -----------STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAK 421 (692)
T ss_dssp ---------------------------------------------------------
T ss_pred -----------CCceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccc
Confidence 2468999999999999999999999999999999999999999975
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-53 Score=471.68 Aligned_cols=375 Identities=21% Similarity=0.257 Sum_probs=270.2
Q ss_pred cccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCccccc
Q 036374 86 DFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQ 165 (706)
Q Consensus 86 ~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~ 165 (706)
+.|+++ .+|..+ |+||+|||||||||++||+|.+. ...++++..+. ...++.|.
T Consensus 9 ~~i~~~-~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~-------------~~~~~~~~~~~---------~~~~~~d~- 62 (441)
T 1y9z_A 9 TFVGAT-VLSDSQ--AGNRTICIIDSGYDRSHNDLNAN-------------NVTGTNNSGTG---------NWYQPGNN- 62 (441)
T ss_dssp HHTTCS-SSCCTT--GGGCEEEEEESCCCTTSTTTTTS-------------EEEECCCTTSC---------CTTCCCSS-
T ss_pred hhcChh-hhhhcC--CCCcEEEEEcCCCCCCChhHhcC-------------cccCcccCCCC---------CCCCCCCC-
Confidence 457778 899864 77999999999999999999742 11112221110 02356777
Q ss_pred CCCcccceeecccccccCCCcccCCCcceeeccCCC--eEEEEEeecCCCC-CCHHHHHHHHHHHHHC-CCcEEEEcccC
Q 036374 166 LGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSA--RIAAYRVCHYPWP-CNEADILAAFDDAIAD-GVDIILTGATY 241 (706)
Q Consensus 166 ~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A--~l~~~kv~~~~~g-~~~~~i~~ai~~ai~~-gv~VIN~SlG~ 241 (706)
.||||||||||+|.... .| +.||||+| +|+.+|+++ ..+ ++.+++++||+||+++ |++|||||||.
T Consensus 63 ~gHGT~vAgiia~~~~~----~g-----~~GvAP~a~~~l~~~kv~~-~~g~~~~~~~~~ai~~a~~~~g~~Vin~S~G~ 132 (441)
T 1y9z_A 63 NAHGTHVAGTIAAIANN----EG-----VVGVMPNQNANIHIVKVFN-EAGWGYSSSLVAAIDTCVNSGGANVVTMSLGG 132 (441)
T ss_dssp CCHHHHHHHHHHCCCSS----SB-----CCCSSCSSCSEEEEEECEE-TTEECCSSCHHHHHHHHHHTTCCSEEEECCCB
T ss_pred CCcHHHHHHHHhcccCC----CC-----ceEecCCCCCEEEEEEEeC-CCCCcCHHHHHHHHHHHHHhcCCcEEEeCCCC
Confidence 99999999999997521 12 39999995 999999998 554 7888999999999999 99999999998
Q ss_pred CCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCC--------------
Q 036374 242 GFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGD-------------- 307 (706)
Q Consensus 242 ~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~-------------- 307 (706)
... ...+..++.++.++|++||+||||+|.....+++..+++|+|||++.+.....+-..+.
T Consensus 133 ~~~----~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~ApG~~i~s~ 208 (441)
T 1y9z_A 133 SGS----TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILST 208 (441)
T ss_dssp SCC----BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEECSSEEEE
T ss_pred CCC----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEeccCCeecc
Confidence 722 24567788889999999999999999877777888899999999987753322211111
Q ss_pred -----Ce----EEeeeeccCCC-CCC-ceee--eEeccCCCCCCCCcccccccCCC--CCCCCcccccEEEEeec-----
Q 036374 308 -----GT----TLVGDAVNPFT-MKG-NKFP--LSYGKTNASYPCSELASRQCSLF--CLDENLVKGKILLCDNF----- 367 (706)
Q Consensus 308 -----~~----~~~g~~~~~~~-~~~-~~~~--lv~~~~~~~~~~~~~~~~~c~~~--~~~~~~~~gkivl~~~~----- 367 (706)
+. .+.|.+++... ++. ..++ +.+...... .........|... .++..+++|||++|+|.
T Consensus 209 ~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~-g~~~~~~~~C~~~~~~~~~~~~~gkivl~~rg~~~~~ 287 (441)
T 1y9z_A 209 VTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPIN-ASATGALAECTVNGTSFSCGNMANKICLVERVGNQGS 287 (441)
T ss_dssp CSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCC-CEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCSSS
T ss_pred ccCCCcccceeecccccccccccCcccccccCCccccccccc-cccccchhccccccccccCCCccccEEEEeccccCcc
Confidence 11 12222221100 000 0000 111110000 0011223457754 45778999999999984
Q ss_pred -----ccchheeecCceEEEecC-CC--C--------CCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCC
Q 036374 368 -----RGDVETFRVGALGSIQPA-ST--I--------MSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDD 431 (706)
Q Consensus 368 -----~k~~~~~~~Ga~g~i~~~-~~--~--------~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~ 431 (706)
+|..+++++|+.|+|++| .. + ......+|.+.++.++++.|+.++.++ ++
T Consensus 288 ~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~----~t---------- 353 (441)
T 1y9z_A 288 SYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS----TT---------- 353 (441)
T ss_dssp SCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE----EE----------
T ss_pred cccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC----cc----------
Confidence 467889999999999998 21 1 234567999999999999998875321 11
Q ss_pred CCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCC
Q 036374 432 AAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPD 511 (706)
Q Consensus 432 ~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~ 511 (706)
+ ++.. .+.|..++|||||||||||++|||+|+||+
T Consensus 354 ------------------------~--------~~~~-------------~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ 388 (441)
T 1y9z_A 354 ------------------------V--------SNQG-------------NQDYEYYNGTSMATPHVSGVATLVWSYHPE 388 (441)
T ss_dssp ------------------------E--------EEEE-------------EESEEEECSHHHHHHHHHHHHHHHHHHCTT
T ss_pred ------------------------c--------cccc-------------CCCceeecccccCCcccchHHHHHHHHCCC
Confidence 1 1111 356999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCCcCcccccChhhHHhhhccCCCC
Q 036374 512 WSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATNPGLVYEVLEGDYIKMLCGMGYS 574 (706)
Q Consensus 512 lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~~~lv~~~~~~~~~~~lc~~~~~ 574 (706)
|+|++||++||+||+++.. ...+..||+|+||+.+|+ ||+.|||.+++.
T Consensus 389 ~sp~~ik~~L~~TA~~~~~---~g~~~~~G~G~vn~~~A~-----------~~~~~lc~~~~~ 437 (441)
T 1y9z_A 389 CSASQVRAALNATADDLSV---AGRDNQTGYGMINAVAAK-----------AYLDESCTGPTD 437 (441)
T ss_dssp SCHHHHHHHHHHHSBCCSS---SSCBTTTBTCBCCHHHHH-----------HHHHHCTTCC--
T ss_pred CCHHHHHHHHHhhchhhcc---CCCcccccccccCHHHHH-----------HHHHhhhcCCCC
Confidence 9999999999999998865 335678999999999994 799999998764
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-52 Score=434.83 Aligned_cols=265 Identities=25% Similarity=0.255 Sum_probs=214.6
Q ss_pred ccccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccc
Q 036374 85 WDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREY 164 (706)
Q Consensus 85 ~~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~ 164 (706)
.+.++++ .+|+.+..|+||+|||||||||++||+|.+. ...+++|. ....+|.|.
T Consensus 15 l~~i~~~-~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~-------------~~~~~~~~-----------~~~~~~~d~ 69 (280)
T 1dbi_A 15 PQNTYTD-YAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK-------------VIKGYDFV-----------DNDYDPMDL 69 (280)
T ss_dssp TGGGTHH-HHTTTCCCCTTCEEEEEESCCCTTSTTTTTT-------------EEEEEETT-----------TTBSCCCCS
T ss_pred hhhcCcH-HHHhhcCCCCCCEEEEEeCCcCCCChhhccC-------------cccceecc-----------CCCCCCCCC
Confidence 3456777 9999988888999999999999999999642 22222321 123456788
Q ss_pred cCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCC
Q 036374 165 QLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFA 244 (706)
Q Consensus 165 ~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~ 244 (706)
.||||||||||+|...++. | +.||||+|+|+.+|++++...++.+++++||++|++.|++|||||||...
T Consensus 70 -~gHGT~vAgiia~~~~~~~---g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~- 139 (280)
T 1dbi_A 70 -NNHGTHVAGIAAAETNNAT---G-----IAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDC- 139 (280)
T ss_dssp -SSHHHHHHHHHHCCCSSSS---S-----CCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCC-
T ss_pred -CCcHHHHHHHHhCcCCCCC---c-----ceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-
Confidence 9999999999999754322 2 38999999999999998333378899999999999999999999999872
Q ss_pred CCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCc
Q 036374 245 FDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGN 324 (706)
Q Consensus 245 ~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 324 (706)
....+..++.++.++|+++|+||||+|......+...+++|+|||++.+
T Consensus 140 ---~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------------------- 188 (280)
T 1dbi_A 140 ---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY---------------------------- 188 (280)
T ss_dssp ---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT----------------------------
T ss_pred ---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCCC----------------------------
Confidence 2356788888999999999999999998766677788999999987643
Q ss_pred eeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhh
Q 036374 325 KFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMED 404 (706)
Q Consensus 325 ~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~ 404 (706)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T 1dbi_A 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccc
Q 036374 405 FERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVK 484 (706)
Q Consensus 405 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~ 484 (706)
+.++.||++||.. ||+|||++|+++++ .+.
T Consensus 189 -----------------------------~~~~~~S~~G~~~--------dv~ApG~~i~s~~~-------------~~~ 218 (280)
T 1dbi_A 189 -----------------------------DRLASFSNYGTWV--------DVVAPGVDIVSTIT-------------GNR 218 (280)
T ss_dssp -----------------------------SCBCTTBCCSTTC--------CEEEECSSEEEEET-------------TTE
T ss_pred -----------------------------CCcCCCCCCCCCc--------eEEEecCCeEeecC-------------CCC
Confidence 3578899999865 99999999999987 356
Q ss_pred eeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCC
Q 036374 485 YNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATN 552 (706)
Q Consensus 485 y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~ 552 (706)
|..++|||||||||||++|||++ |.+++.+||++|++||+++.. ....||+|+||+.+|++
T Consensus 219 ~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~-----~~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 219 YAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISG-----TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTT-----BTTTBSSEECCHHHHHT
T ss_pred EEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCC-----CCCcccCCEECHHHHhc
Confidence 99999999999999999999987 999999999999999998764 23679999999999986
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-52 Score=429.85 Aligned_cols=261 Identities=28% Similarity=0.357 Sum_probs=219.8
Q ss_pred cccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCccccc
Q 036374 86 DFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQ 165 (706)
Q Consensus 86 ~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~ 165 (706)
+.|+++ .+|..+++|+||+|+|||||| .+||+|+. ..+.+|. .+..++.|.
T Consensus 9 ~~i~~~-~a~~~g~~G~gv~VaViDtGi-~~h~~l~~---------------~~~~~~~-----------~~~~~~~d~- 59 (269)
T 1gci_A 9 SRVQAP-AAHNRGLTGSGVKVAVLDTGI-STHPDLNI---------------RGGASFV-----------PGEPSTQDG- 59 (269)
T ss_dssp HHTTHH-HHHHTTCSCTTCEEEEEESCC-CCCTTCCE---------------EEEEECS-----------TTCCSCSCS-
T ss_pred hhcCcH-HHHhcCCCCCCCEEEEECCCC-CCCHhhcc---------------cCCcccC-----------CCCCCCCCC-
Confidence 346777 899999999999999999999 89999941 1122221 112345677
Q ss_pred CCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 036374 166 LGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAF 245 (706)
Q Consensus 166 ~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~ 245 (706)
.||||||||||+|... + .| +.||||+|+|+.+|+++....+..+++++||+||++.+++|||||||....
T Consensus 60 ~gHGT~vAgiia~~~~-~---~~-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~Vin~S~G~~~~- 129 (269)
T 1gci_A 60 NGHGTHVAGTIAALNN-S---IG-----VLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSP- 129 (269)
T ss_dssp SSHHHHHHHHHHCCCS-S---SB-----CCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSSC-
T ss_pred CCChHHHHHHHhcCcC-C---CC-----cEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC-
Confidence 9999999999999731 1 12 389999999999999983334788899999999999999999999998722
Q ss_pred CChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCce
Q 036374 246 DFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNK 325 (706)
Q Consensus 246 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 325 (706)
...+..++.++.++|+++|+||||+|......+...+++|+||+++.+
T Consensus 130 ---~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~----------------------------- 177 (269)
T 1gci_A 130 ---SATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN----------------------------- 177 (269)
T ss_dssp ---CHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT-----------------------------
T ss_pred ---CHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecCC-----------------------------
Confidence 356778888899999999999999998777778888999999987533
Q ss_pred eeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhH
Q 036374 326 FPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDF 405 (706)
Q Consensus 326 ~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~ 405 (706)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T 1gci_A 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccce
Q 036374 406 ERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKY 485 (706)
Q Consensus 406 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y 485 (706)
+.++.||++||.. ||+|||++|+++++ ++.|
T Consensus 178 ----------------------------~~~~~~S~~G~~~--------di~APG~~i~s~~~-------------~~~~ 208 (269)
T 1gci_A 178 ----------------------------NNRASFSQYGAGL--------DIVAPGVNVQSTYP-------------GSTY 208 (269)
T ss_dssp ----------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEET-------------TTEE
T ss_pred ----------------------------CCCCCCCCCCCCc--------ceEecCCCeEeecC-------------CCCE
Confidence 3478899999975 99999999999987 3569
Q ss_pred eEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCC
Q 036374 486 NILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATN 552 (706)
Q Consensus 486 ~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~ 552 (706)
..++|||||||||||++|||+|++|+|++.|||++|++||+++. .+..||+|+||+.+|++
T Consensus 209 ~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g------~~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 209 ASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG------STNLYGSGLVNAEAATR 269 (269)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS------CHHHHTTCBCCHHHHTC
T ss_pred EEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC------CCCCcccCccCHHHHcC
Confidence 99999999999999999999999999999999999999999874 36789999999999985
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-52 Score=433.08 Aligned_cols=261 Identities=26% Similarity=0.363 Sum_probs=218.1
Q ss_pred cccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCccccc
Q 036374 86 DFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQ 165 (706)
Q Consensus 86 ~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~ 165 (706)
+.++++ .+|..+++|+||+|+|||||||++||+|+. ..+.+|. .+...+.|.
T Consensus 9 ~~i~~~-~~~~~g~~G~gv~VaViDtGid~~h~~l~~---------------~~g~~~~-----------~~~~~~~d~- 60 (274)
T 1r0r_E 9 PLIKAD-KVQAQGFKGANVKVAVLDTGIQASHPDLNV---------------VGGASFV-----------AGEAYNTDG- 60 (274)
T ss_dssp HHTTHH-HHHHHTCSCTTCEEEEEESCCCTTCTTCCE---------------EEEEECS-----------TTCCTTCCS-
T ss_pred hhcCCH-HHHhcCCCCCCCEEEEEcCCCCCCCHhHcC---------------CCCcccc-----------CCCCCCCCC-
Confidence 457777 899999999999999999999999999941 1112221 112335677
Q ss_pred CCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCC
Q 036374 166 LGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-CNEADILAAFDDAIADGVDIILTGATYGFA 244 (706)
Q Consensus 166 ~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~ 244 (706)
.||||||||||+|... + .| +.||||+|+|+.+|+++ ..+ ++.++++++|+||++.+++|||||||...
T Consensus 61 ~gHGT~vAgiia~~~~-~---~g-----~~GvAp~a~l~~~~v~~-~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~- 129 (274)
T 1r0r_E 61 NGHGTHVAGTVAALDN-T---TG-----VLGVAPSVSLYAVKVLN-SSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS- 129 (274)
T ss_dssp SSHHHHHHHHHHCCSS-S---SB-----CCCSSTTSEEEEEECSC-TTSEECHHHHHHHHHHHHHTTCSEEEECEEBSS-
T ss_pred CCCHHHHHHHHHccCC-C---Cc-----eEEECCCCEEEEEEEEC-CCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCC-
Confidence 8999999999998731 1 12 38999999999999998 444 77889999999999999999999999972
Q ss_pred CCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC----CCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCC
Q 036374 245 FDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKP----ASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFT 320 (706)
Q Consensus 245 ~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 320 (706)
....+..++.++.++|+++|+||||+|... ...+...+++|+||+++.+
T Consensus 130 ---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~------------------------ 182 (274)
T 1r0r_E 130 ---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN------------------------ 182 (274)
T ss_dssp ---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT------------------------
T ss_pred ---CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecCC------------------------
Confidence 235678888899999999999999998753 3445677899999987533
Q ss_pred CCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEe
Q 036374 321 MKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVIL 400 (706)
Q Consensus 321 ~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i 400 (706)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T 1r0r_E 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCC
Q 036374 401 KMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDH 480 (706)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~ 480 (706)
+.++.||++||.. ||+|||++|+++++
T Consensus 183 ---------------------------------~~~~~~S~~G~~~--------di~APG~~i~s~~~------------ 209 (274)
T 1r0r_E 183 ---------------------------------SNRASFSSVGAEL--------EVMAPGAGVYSTYP------------ 209 (274)
T ss_dssp ---------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEET------------
T ss_pred ---------------------------------CCcCccCCCCCCc--------eEEeCCCCeEeecC------------
Confidence 3478899999854 99999999999987
Q ss_pred cccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCC
Q 036374 481 RFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATN 552 (706)
Q Consensus 481 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~ 552 (706)
.+.|..++|||||||||||++|||+|++|+|++++||++|++||+++. .+..||+|+||+.+|++
T Consensus 210 -~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g------~~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 210 -TNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp -TTEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS------CHHHHTTCBCCHHHHTC
T ss_pred -CCCEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC------CCCCcccCccCHHHHhC
Confidence 356999999999999999999999999999999999999999999874 46789999999999985
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-53 Score=457.21 Aligned_cols=299 Identities=18% Similarity=0.177 Sum_probs=199.2
Q ss_pred ccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCccc--ccCc-----eeEeee------
Q 036374 87 FMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNF--TCNN-----KIIGAR------ 153 (706)
Q Consensus 87 ~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f--~~n~-----k~ig~~------ 153 (706)
..|++ ++|..+..|++|+|||||||||++||+|++....+....|.. .++..... ..+. ...+..
T Consensus 17 ipG~~-~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (357)
T 4h6x_A 17 IPGLA-DLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHE-PAEPITPEDYAAFQSIRDQGLKGKEKEEALE 94 (357)
T ss_dssp STTHH-HHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSC-CCCCCCHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred ccCHH-HHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccc-cccccCcccccccccccCccccccccccccc
Confidence 34777 899999999999999999999999999987655555556655 33221110 0000 000000
Q ss_pred ec-CCCCCcccccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC-----CCHHHHHHHHHHH
Q 036374 154 YY-SGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-----CNEADILAAFDDA 227 (706)
Q Consensus 154 ~~-~~~~~~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-----~~~~~i~~ai~~a 227 (706)
.+ ....++.|. +||||||||||||+... .+.||||+|+|+.+|++....+ ....+++++|++|
T Consensus 95 ~~~~~~~~~~D~-~gHGThVAGiiag~~~~----------g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a 163 (357)
T 4h6x_A 95 AVIPDTKDRIVL-NDHACHVTSTIVGQEHS----------PVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLA 163 (357)
T ss_dssp HHCTTTHHHHHH-HHHHHHHHHHHHCCTTS----------SCCCSCTTSEEEEEECTTC----------CHHHHHHHHHH
T ss_pred cccCCCCCCcCC-CCcHHHHHHHHhccCCC----------CceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHH
Confidence 00 012334566 89999999999997421 2389999999999999752111 3456788999999
Q ss_pred HHCCCcEEEEcccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCC
Q 036374 228 IADGVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGD 307 (706)
Q Consensus 228 i~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~ 307 (706)
++.|++|||||||.........+.+..++.++.++|+++|+||||+|.....+++..+++|+|||++.+
T Consensus 164 ~~~g~~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~----------- 232 (357)
T 4h6x_A 164 LELGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVD----------- 232 (357)
T ss_dssp HHTTCSEEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECTT-----------
T ss_pred HHcCCCEEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEeccC-----------
Confidence 999999999999987444555677888889999999999999999998777778888999999997643
Q ss_pred CeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCC
Q 036374 308 GTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPAST 387 (706)
Q Consensus 308 ~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~ 387 (706)
T Consensus 233 -------------------------------------------------------------------------------- 232 (357)
T 4h6x_A 233 -------------------------------------------------------------------------------- 232 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecc
Q 036374 388 IMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAY 467 (706)
Q Consensus 388 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~ 467 (706)
+.++.||+||+.. .||||+|||++|++++
T Consensus 233 ----------------------------------------------~~~~~fSn~G~~~-----~~~di~APG~~i~s~~ 261 (357)
T 4h6x_A 233 ----------------------------------------------GTPCHFSNWGGNN-----TKEGILAPGEEILGAQ 261 (357)
T ss_dssp ----------------------------------------------SSBCTTCC---CT-----TTTEEEEECSSEEECC
T ss_pred ----------------------------------------------CcccccccCCCCC-----CccceeecCCCeEecc
Confidence 4578999999754 4899999999999998
Q ss_pred cCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCC
Q 036374 468 TGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRS----FHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSG 543 (706)
Q Consensus 468 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G 543 (706)
+.. +.|..++|||||||||||++|||++ ++|.|+++|||++|++||+++... ....+..||+|
T Consensus 262 ~~~------------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~-~~~~~~~~G~G 328 (357)
T 4h6x_A 262 PCT------------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPE-VVEEPERCLRG 328 (357)
T ss_dssp TTC------------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC---------------CTTC
T ss_pred CCC------------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCC-CCCCcccceeE
Confidence 742 4577899999999999999999995 467899999999999999987542 23356789999
Q ss_pred CCCccccCCc
Q 036374 544 HIDPVKATNP 553 (706)
Q Consensus 544 ~id~~~Al~~ 553 (706)
+||+.+|++.
T Consensus 329 ~vn~~~A~~~ 338 (357)
T 4h6x_A 329 FVNIPGAMKV 338 (357)
T ss_dssp BCCHHHHHHH
T ss_pred EecHHHHHHH
Confidence 9999999874
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=430.82 Aligned_cols=262 Identities=27% Similarity=0.350 Sum_probs=218.7
Q ss_pred cccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCc-ccc
Q 036374 86 DFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTT-REY 164 (706)
Q Consensus 86 ~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~-~D~ 164 (706)
+.|+++ .+|..+++|+||+|||||||||++||+|+. ..+.+|.. +..+| .|.
T Consensus 9 ~~i~~~-~~~~~g~~G~gv~VaViDtGid~~h~~l~~---------------~~g~~~~~-----------~~~~~~~d~ 61 (281)
T 1to2_E 9 SQIKAP-ALHSQGYTGSNVKVAVIDSGIDSSHPDLKV---------------AGGASMVP-----------SETNPFQDN 61 (281)
T ss_dssp HHTTHH-HHHHHTCSCTTCEEEEEESCCCTTCTTCCE---------------EEEEECCT-----------TCCCTTCCS
T ss_pred hhcChH-HHHhcCCCCCCCEEEEEcCCCCCCCHHHcC---------------cCCccccC-----------CCCCCCCCC
Confidence 456777 899999999999999999999999999942 11122211 11233 566
Q ss_pred cCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCC
Q 036374 165 QLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-CNEADILAAFDDAIADGVDIILTGATYGF 243 (706)
Q Consensus 165 ~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~ai~~gv~VIN~SlG~~~ 243 (706)
.||||||||||+|... + .| +.||||+|+|+.+|+++ ..+ +..++++++|+||++.+++|||||||...
T Consensus 62 -~gHGT~vAgiia~~~~-~---~g-----~~GvAp~a~l~~~kv~~-~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~ 130 (281)
T 1to2_E 62 -NSHGTHVAGTVAALNN-S---IG-----VLGVAPSASLYAVKVLG-ADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130 (281)
T ss_dssp -SSHHHHHHHHHHCCSS-S---SS-----BCCSSTTSEEEEEECSC-TTSEECHHHHHHHHHHHHHTTCSEEEECEEBSC
T ss_pred -CCcHHHHHHHHhccCC-C---Cc-----ceeeCCCCEEEEEEEeC-CCCCccHHHHHHHHHHHHHCCCcEEEECCcCCC
Confidence 8999999999999731 1 12 38999999999999998 444 77889999999999999999999999873
Q ss_pred CCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC----CCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCC
Q 036374 244 AFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKP----ASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPF 319 (706)
Q Consensus 244 ~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~----~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~ 319 (706)
....+..++.++.++|+++|+||||+|... ...+...|++|+|||++.+
T Consensus 131 ----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~----------------------- 183 (281)
T 1to2_E 131 ----GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS----------------------- 183 (281)
T ss_dssp ----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT-----------------------
T ss_pred ----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecCC-----------------------
Confidence 235778888889999999999999998763 3446677899999987532
Q ss_pred CCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEE
Q 036374 320 TMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVI 399 (706)
Q Consensus 320 ~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~ 399 (706)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T 1to2_E 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred echhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCC
Q 036374 400 LKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMD 479 (706)
Q Consensus 400 i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~ 479 (706)
+.++.||++||.. ||+|||++|+++++
T Consensus 184 ----------------------------------~~~~~fS~~G~~~--------di~APG~~i~s~~~----------- 210 (281)
T 1to2_E 184 ----------------------------------NQRASFSSVGPEL--------DVMAPGVSIQSTLP----------- 210 (281)
T ss_dssp ----------------------------------SCBCTTCCCSTTC--------CEEEECSSEEEEET-----------
T ss_pred ----------------------------------CCcCCcCCCCCCc--------eEEecCCCeEeecC-----------
Confidence 3578899999965 99999999999987
Q ss_pred CcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCCc
Q 036374 480 HRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATNP 553 (706)
Q Consensus 480 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~~ 553 (706)
.+.|..++|||||||+|||++|||+|++|+|+++|||++|++||+++. .++.||||+||+.+|+++
T Consensus 211 --~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g------~~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 211 --GNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG------DSFYYGKGLINVQAAAQH 276 (281)
T ss_dssp --TTEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS------CHHHHTTCBCCHHHHTSS
T ss_pred --CCCEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC------CCCCcccceecHHHHhhh
Confidence 356999999999999999999999999999999999999999999874 467899999999999986
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-51 Score=429.47 Aligned_cols=264 Identities=25% Similarity=0.306 Sum_probs=220.1
Q ss_pred ccccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccc
Q 036374 85 WDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREY 164 (706)
Q Consensus 85 ~~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~ 164 (706)
.+.++++ .+|+.. +|+||+|||||||||++||+|.+. ...+++|. .+..++.|.
T Consensus 15 l~~i~~~-~aw~~~-~G~gv~VaViDtGvd~~h~~l~~~-------------~~~~~~~~-----------~~~~~~~d~ 68 (279)
T 1thm_A 15 PQKIQAP-QAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK-------------VVGGWDFV-----------DNDSTPQNG 68 (279)
T ss_dssp HHHTTHH-HHHTTC-CCTTCEEEEEESCCCTTCTTTTTT-------------EEEEEETT-----------TTBSCCCCS
T ss_pred hhhCChH-HHHhcC-CCCCCEEEEEccCCCCCCcchhcC-------------cccccccc-----------CCCCCCCCC
Confidence 3447777 899976 799999999999999999999642 22222221 223456787
Q ss_pred cCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCC
Q 036374 165 QLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFA 244 (706)
Q Consensus 165 ~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~ 244 (706)
.||||||||||+|...++. | +.|+||+|+|+.+|++++...++.+++++||++|++.|++|||||||...
T Consensus 69 -~gHGT~vAgiia~~~~n~~---g-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~- 138 (279)
T 1thm_A 69 -NGHGTHCAGIAAAVTNNST---G-----IAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV- 138 (279)
T ss_dssp -SSHHHHHHHHHHCCCSSSS---S-----CCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS-
T ss_pred -CCcHHHHHHHHhCccCCCC---c-----cEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHHCCCCEEEEecCCCC-
Confidence 9999999999999754322 2 38999999999999998333478889999999999999999999999872
Q ss_pred CCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCc
Q 036374 245 FDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGN 324 (706)
Q Consensus 245 ~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 324 (706)
....+..++.++.++|+++|+||||+|.....++...+++|+|||++.+
T Consensus 139 ---~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------------------- 187 (279)
T 1thm_A 139 ---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN---------------------------- 187 (279)
T ss_dssp ---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT----------------------------
T ss_pred ---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCCC----------------------------
Confidence 2356788888999999999999999998776778888999999987643
Q ss_pred eeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhh
Q 036374 325 KFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMED 404 (706)
Q Consensus 325 ~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~ 404 (706)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 1thm_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccc
Q 036374 405 FERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVK 484 (706)
Q Consensus 405 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~ 484 (706)
+.++.||++||.. ||+|||++|+++++. +.
T Consensus 188 -----------------------------~~~~~fS~~G~~~--------dv~APG~~i~s~~~~-------------~~ 217 (279)
T 1thm_A 188 -----------------------------DNKSSFSTYGSWV--------DVAAPGSSIYSTYPT-------------ST 217 (279)
T ss_dssp -----------------------------SCBCTTCCCCTTC--------CEEEECSSEEEEETT-------------TE
T ss_pred -----------------------------CCcCCcCCCCCce--------EEEEcCCCeEEEeCC-------------CC
Confidence 3478899999865 999999999999873 56
Q ss_pred eeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCC
Q 036374 485 YNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATN 552 (706)
Q Consensus 485 y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~ 552 (706)
|..++|||||||||||++||| ++|.+++++||++|++||+++... ...||+|+||+.+|++
T Consensus 218 ~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~-----~~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 218 YASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGT-----GTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp EEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTB-----TTTBSSEECCHHHHHH
T ss_pred EEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCC-----CccccCCeeCHHHHhc
Confidence 999999999999999999999 579999999999999999998652 2579999999999975
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-51 Score=434.29 Aligned_cols=268 Identities=23% Similarity=0.275 Sum_probs=215.4
Q ss_pred cccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCC-CCCcccc
Q 036374 86 DFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSG-INTTREY 164 (706)
Q Consensus 86 ~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~-~~~~~D~ 164 (706)
+.++++ .+|..+++|+||+|||||||||++||+|.+ +...+.+|..+. .+ ..++.|.
T Consensus 26 ~~i~~~-~aw~~~~~G~gv~VaViDtGid~~Hp~l~~-------------~~~~~~~~~~~~--------~~~~~~~~d~ 83 (327)
T 2x8j_A 26 EIVEAP-AVWRASAKGAGQIIGVIDTGCQVDHPDLAE-------------RIIGGVNLTTDY--------GGDETNFSDN 83 (327)
T ss_dssp HHTTHH-HHHHHHGGGTTCEEEEEESCCCTTCTTTGG-------------GEEEEEECSSGG--------GGCTTCCCCS
T ss_pred hhcChH-HHHhcCCCCCCCEEEEEcCCCCCCChhHhh-------------cccCCccccCCC--------CCCCCCCCCC
Confidence 457778 999999999999999999999999999964 222222221110 00 1234677
Q ss_pred cCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC-CCHHHHHHHHHHHHH------CCCcEEEE
Q 036374 165 QLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-CNEADILAAFDDAIA------DGVDIILT 237 (706)
Q Consensus 165 ~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~ai~------~gv~VIN~ 237 (706)
.||||||||||+|... +. | +.||||+|+|+++|+++ ..+ ++.+++++||++|++ .+++||||
T Consensus 84 -~gHGT~VAgiia~~~~-~~---g-----~~GvAp~a~l~~~kv~~-~~g~~~~~~i~~ai~~a~~~~~~~~~~~~Vin~ 152 (327)
T 2x8j_A 84 -NGHGTHVAGTVAAAET-GS---G-----VVGVAPKADLFIIKALS-GDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITM 152 (327)
T ss_dssp -SSHHHHHHHHHHCCCC-SS---B-----CCCSSTTCEEEEEECSC-TTSEECHHHHHHHHHHHHHCCCTTSCCCSEEEE
T ss_pred -CCchHHHHHHHhccCC-CC---C-----cEeeCCCCEEEEEEeEC-CCCCcCHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 9999999999999732 11 2 38999999999999998 444 778899999999999 89999999
Q ss_pred cccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC-----CCcccCCCceEEEccccCCcceeeeEEeCCCeEEe
Q 036374 238 GATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKP-----ASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLV 312 (706)
Q Consensus 238 SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~-----~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~ 312 (706)
|||... ....+..++.++.++|++||+||||+|... ...+...+++|+|||++.+
T Consensus 153 S~G~~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~~---------------- 212 (327)
T 2x8j_A 153 SLGGPT----DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFD---------------- 212 (327)
T ss_dssp CEEBSC----CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECTT----------------
T ss_pred CCCcCC----CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECCC----------------
Confidence 999872 235677888889999999999999998752 3456678999999997643
Q ss_pred eeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCC
Q 036374 313 GDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHP 392 (706)
Q Consensus 313 g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~ 392 (706)
T Consensus 213 -------------------------------------------------------------------------------- 212 (327)
T 2x8j_A 213 -------------------------------------------------------------------------------- 212 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCC
Q 036374 393 TPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWG 472 (706)
Q Consensus 393 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~ 472 (706)
+.++.||++||.. ||+|||++|+++++.
T Consensus 213 -----------------------------------------~~~~~fS~~G~~~--------di~APG~~i~s~~~~--- 240 (327)
T 2x8j_A 213 -----------------------------------------LRLSDFTNTNEEI--------DIVAPGVGIKSTYLD--- 240 (327)
T ss_dssp -----------------------------------------CCBSCC---CCCC--------SEEEECSSEEEECST---
T ss_pred -----------------------------------------CCCCCccCCCCCc--------eEecCcCceEeecCC---
Confidence 3578899999854 999999999999863
Q ss_pred CCCCCCCCcccceeEeccccchhHHHHHHHHHHHhh-----CCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCc
Q 036374 473 PSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSF-----HPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDP 547 (706)
Q Consensus 473 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-----~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~ 547 (706)
+.|..++|||||||+|||++|||+|+ +|.|++.+||++|++||+++.. ++..||+|+||+
T Consensus 241 ----------~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g~-----~~~~~G~G~vd~ 305 (327)
T 2x8j_A 241 ----------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGF-----TAQAEGNGFLTL 305 (327)
T ss_dssp ----------TCEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCSS-----CHHHHTTCEECT
T ss_pred ----------CCEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCCC-----CCCceeeeEECH
Confidence 56999999999999999999999999 9999999999999999998743 467899999999
Q ss_pred cccCCc
Q 036374 548 VKATNP 553 (706)
Q Consensus 548 ~~Al~~ 553 (706)
.+|++.
T Consensus 306 ~~A~~~ 311 (327)
T 2x8j_A 306 DLVERI 311 (327)
T ss_dssp THHHHH
T ss_pred HHHHHh
Confidence 999874
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-50 Score=424.21 Aligned_cols=282 Identities=23% Similarity=0.244 Sum_probs=222.5
Q ss_pred cccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCccccc
Q 036374 86 DFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQ 165 (706)
Q Consensus 86 ~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~ 165 (706)
+.|+++ .+|..+.+|+||+|||||||||++||+|.+ .+..+.+|..+... ......|.
T Consensus 11 ~~i~~~-~~w~~~~~G~gv~VaViDtGvd~~H~~l~~-------------~~~~~~~~~~~~~~-------~~~~~~d~- 68 (310)
T 2ixt_A 11 KAIYNN-DTLTSTTGGSGINIAVLDTGVNTSHPDLVN-------------NVEQCKDFTGATTP-------INNSCTDR- 68 (310)
T ss_dssp HHHHTC-TTCCCCCCCTTCEEEEEESCCCTTCTTTTT-------------TEEEEEESSSSSSC-------EETCCCCS-
T ss_pred hhcCch-hhhhccCCCCCcEEEEEecCCCCCCHHHhh-------------cccccccccCCCCC-------CCCCCCCC-
Confidence 446777 999999999999999999999999999974 22223333221100 01234566
Q ss_pred CCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCC-----cEEEEccc
Q 036374 166 LGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGV-----DIILTGAT 240 (706)
Q Consensus 166 ~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv-----~VIN~SlG 240 (706)
.||||||||||+|....+ ...+.||||+|+|+.+|++.+...+..++++++|++|++.++ +|||||||
T Consensus 69 ~gHGT~vAgiia~~~~~n-------~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~Vin~S~G 141 (310)
T 2ixt_A 69 NGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLG 141 (310)
T ss_dssp SSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEECCC
T ss_pred CCCHHHHHHHHhccCCCC-------CCceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhhccCCCeEEEEcCC
Confidence 899999999999874211 112389999999999999983333788999999999999887 99999999
Q ss_pred CCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC--CCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccC
Q 036374 241 YGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKP--ASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNP 318 (706)
Q Consensus 241 ~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~--~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~ 318 (706)
... ....+..++.++.++|++||+||||+|... ...+...+++|+|||++...
T Consensus 142 ~~~----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~--------------------- 196 (310)
T 2ixt_A 142 SSA----NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ--------------------- 196 (310)
T ss_dssp BSS----CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE---------------------
T ss_pred CCC----CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc---------------------
Confidence 972 245677888889999999999999999763 34566789999999876210
Q ss_pred CCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEE
Q 036374 319 FTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTV 398 (706)
Q Consensus 319 ~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~ 398 (706)
T Consensus 197 -------------------------------------------------------------------------------- 196 (310)
T 2ixt_A 197 -------------------------------------------------------------------------------- 196 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCC--cccccCCCCCCCCC----CCCCCCceEecCCcEEecccCCCC
Q 036374 399 ILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAP--VVHPFSGRGPSKIT----PDIIKPDISAPAVQILAAYTGGWG 472 (706)
Q Consensus 399 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~--~~a~fSS~GP~~~~----~~~~KPDi~APG~~I~sa~~~~~~ 472 (706)
..+ .++.||++||.... ..+.||||+|||++|+++++.
T Consensus 197 ---------------------------------~~g~~~~~~~S~~G~~~~~g~~~~~~~~~di~ApG~~i~s~~~~--- 240 (310)
T 2ixt_A 197 ---------------------------------QNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYN--- 240 (310)
T ss_dssp ---------------------------------ETTEEEECTTSCCCCTTTTTSSSCCTTCCCEEEECSSEEEECTT---
T ss_pred ---------------------------------cCCCeeeccccCCCCccCCccccccCCCeeEECCCCCEeeecCC---
Confidence 001 47889999995421 123599999999999999863
Q ss_pred CCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCC----CCCCCCCCCCCCCCc
Q 036374 473 PSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTV----NRGREFDYGSGHIDP 547 (706)
Q Consensus 473 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~----~~~~~~~~G~G~id~ 547 (706)
+.|..++|||||||||||++|||+|++|+|++++||++|++||+++.... .+.++..||||++|+
T Consensus 241 ----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~a~~g~d~~~G~G~~~v 309 (310)
T 2ixt_A 241 ----------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDYASGFGFARV 309 (310)
T ss_dssp ----------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBSTTCCSSSBTTTBTCBCCC
T ss_pred ----------CCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCCcccccCCccccccceeec
Confidence 56999999999999999999999999999999999999999999876432 356788999999996
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-51 Score=426.37 Aligned_cols=266 Identities=20% Similarity=0.200 Sum_probs=210.3
Q ss_pred CCCC-CCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeec
Q 036374 98 PTVE-SDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIA 176 (706)
Q Consensus 98 ~~~G-~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ 176 (706)
..+| +||+|||||||||++||+|.+. ...+.++.... ......|. +||||||||||
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~-------------~~~~~~~~~~~---------~~~~d~~~-~gHGT~VAGii 59 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGA-------------DLTVLPTLAPT---------AARSDGFM-SAHGTHVASII 59 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTC-------------EEEECCCSSCC---------CCCTTCHH-HHHHHHHHHHH
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCC-------------eeecCcCCCCC---------CCCCCCCC-CCcccceeehh
Confidence 4678 7999999999999999999742 11111111000 01222345 79999999999
Q ss_pred ccccccCCCcccCCCcceeeccCCCeEEEEEeecCCC-CCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHH
Q 036374 177 AGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPW-PCNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIG 255 (706)
Q Consensus 177 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~-g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a 255 (706)
+|+... .+.||||+|+|+.+|++.+.. ..+..+++++|+||++.+++|||||||...........+..+
T Consensus 60 ag~~~~----------~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~~~~~~~a 129 (282)
T 3zxy_A 60 FGQPET----------SVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTDFGEADGWLENA 129 (282)
T ss_dssp HCCTTS----------SSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSSCCCHHHHHH
T ss_pred hccCCc----------eeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccccccccccHHHHHH
Confidence 987421 238999999999999986332 367888999999999999999999999763333445667888
Q ss_pred HHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCC
Q 036374 256 AFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNA 335 (706)
Q Consensus 256 ~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~ 335 (706)
+..+.++|+++|+||||+|......+...+++|+|||++.+
T Consensus 130 i~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------------------------------- 170 (282)
T 3zxy_A 130 VSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDDH--------------------------------------- 170 (282)
T ss_dssp HHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECTT---------------------------------------
T ss_pred HHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcCC---------------------------------------
Confidence 88999999999999999998777777888999999987643
Q ss_pred CCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcC
Q 036374 336 SYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINST 415 (706)
Q Consensus 336 ~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~ 415 (706)
T Consensus 171 -------------------------------------------------------------------------------- 170 (282)
T 3zxy_A 171 -------------------------------------------------------------------------------- 170 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchh
Q 036374 416 EKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIAS 495 (706)
Q Consensus 416 ~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAa 495 (706)
+.++.||+||+. ..||||+|||++|+++++. +.|..++||||||
T Consensus 171 ------------------~~~~~~S~~~~~-----~~~~di~ApG~~i~s~~~~-------------~~~~~~sGTS~Aa 214 (282)
T 3zxy_A 171 ------------------GHPLDFSNWGST-----YEQQGILAPGEDILGAKPG-------------GGTERLSGTAFAT 214 (282)
T ss_dssp ------------------SCBCSSSCCCHH-----HHHHEEEEECSSEEEECTT-------------SCEEEECSHHHHH
T ss_pred ------------------CccccccCCCCC-----ccccceeccCcceeeecCC-------------CceeecCCCcccc
Confidence 457889999874 3588999999999999873 5699999999999
Q ss_pred HHHHHHHHHHHhhC----CCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCC
Q 036374 496 AFAAGAAAYVRSFH----PDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATN 552 (706)
Q Consensus 496 P~VAG~aALl~~~~----P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~ 552 (706)
|||||++|||++++ |.++|+|||++|++||+++... .+.....||+|+||+.+|++
T Consensus 215 P~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~-~~~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 215 PIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDD-APEQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC--------CGGGTTCBCCHHHHHH
T ss_pred hHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCC-CCCccCceeeeEeCHHHHHH
Confidence 99999999999874 7899999999999999987542 23456789999999999986
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=464.61 Aligned_cols=407 Identities=19% Similarity=0.164 Sum_probs=272.0
Q ss_pred CcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCC----cccccCCCcccceeeccc
Q 036374 103 DMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINT----TREYQLGHGTHMASIAAG 178 (706)
Q Consensus 103 GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~----~~D~~~gHGThVAgi~ag 178 (706)
+|+|||||||+|.+|++...- ..|+. ..+.+ .| .+.+-+..++.+..+ ..|. +||||||||||||
T Consensus 214 ~V~VAVIDTG~d~DL~d~~~l------~~Y~~-~~dyg-~F--~D~v~~~~n~~Ddgd~~~~v~D~-~GHGThVAGIIAa 282 (1354)
T 3lxu_X 214 DGWLTIVDTTEQGDLDQALRI------GEYSR-THETR-NV--DDFLSISVNVHDEGNVLEVVGMS-SPHGTHVSSIASG 282 (1354)
T ss_dssp SSCEEEECSSSSCCSSCSEEE------ECTTT-TCCCC-EE--SSSCEEEEEEEGGGTEEEEEECC-CHHHHHHHHHHCC
T ss_pred CEEEEEEeCCCCCCccccccc------ccccc-ccccc-cc--ccccCCCCccCCCCCccccCCCC-CCcHHHHHHHHhc
Confidence 799999999998766654210 00100 00000 11 111222222211111 2466 8999999999999
Q ss_pred ccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC--CCHHHHHHHHHHHHH-----CCCcEEEEcccCCCCCCChhhH
Q 036374 179 NLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP--CNEADILAAFDDAIA-----DGVDIILTGATYGFAFDFAEDA 251 (706)
Q Consensus 179 ~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g--~~~~~i~~ai~~ai~-----~gv~VIN~SlG~~~~~~~~~~~ 251 (706)
.. ++. .+.||||+|+|+++|+++...+ .+..+++++|.+|++ .|++|||||||... .....+.
T Consensus 283 ~~-N~~--------g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVINmS~G~~~-~~~~~~~ 352 (1354)
T 3lxu_X 283 NH-SSR--------DVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHA-NWSNSGR 352 (1354)
T ss_dssp CC-SSS--------SSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEEEECCCCCC-SCSSCCH
T ss_pred CC-CCC--------CceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEEEcCCccCC-CCCccHH
Confidence 85 222 2399999999999999983222 356778888888887 79999999999983 2223456
Q ss_pred HHHHHHHHH-hCCcEEEEecCCCCCCCCCc--cc--CCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCcee
Q 036374 252 VAIGAFHAM-EKGILTAVPTGNMGPKPAST--VV--VAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKF 326 (706)
Q Consensus 252 ~~~a~~~a~-~~Gv~vV~AAGN~G~~~~~~--~~--~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 326 (706)
+..++.++. ++|++||+||||+|....++ ++ .++++|+|||++.+..........
T Consensus 353 l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~~-------------------- 412 (1354)
T 3lxu_X 353 IGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAMR-------------------- 412 (1354)
T ss_dssp HHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC-------------------------
T ss_pred HHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCcccccccc--------------------
Confidence 777777776 79999999999999865443 44 379999999987553211100000
Q ss_pred eeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHH
Q 036374 327 PLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFE 406 (706)
Q Consensus 327 ~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~ 406 (706)
T Consensus 413 -------------------------------------------------------------------------------- 412 (1354)
T 3lxu_X 413 -------------------------------------------------------------------------------- 412 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCccccee
Q 036374 407 RVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYN 486 (706)
Q Consensus 407 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 486 (706)
....+.+++|||+||+. ++++||||+|||++|+++.... .+.|.
T Consensus 413 -----------------------~~~~g~~asFSS~GPt~--dg~~KpDIaAPG~~I~St~~~~-----------~~~y~ 456 (1354)
T 3lxu_X 413 -----------------------EKLPGNVYTWTSRDPCI--DGGQGVTVCAPGGAIASVPQFT-----------MSKSQ 456 (1354)
T ss_dssp ----------------------------CCCCCCCCSCCS--SSSCCEEEEEEC--------------------------
T ss_pred -----------------------cCCCCccccccCCCCCc--cCCCcceEEecCceEEEeecCC-----------CCcee
Confidence 01125689999999998 8999999999999999875532 35689
Q ss_pred EeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCCcCcccccChh
Q 036374 487 ILSGTSIASAFAAGAAAYVRS----FHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATNPGLVYEVLEG 562 (706)
Q Consensus 487 ~~sGTSmAaP~VAG~aALl~~----~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~~~lv~~~~~~ 562 (706)
.++|||||||||||++|||++ .+|.|++.+||++|++||+++.. ..++.||+|+||+.+|++..+.++..+.
T Consensus 457 ~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~----~~~~~~G~GlLDa~~AV~~a~~~~~~p~ 532 (1354)
T 3lxu_X 457 LMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY----VDPFAQGHGLLNVEKAFEHLTEHRQSKD 532 (1354)
T ss_dssp CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT----SCTTTSSSSBCCHHHHHHHHHTTTTCGG
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC----CCcccccCCEeCHHHHHHHHHhcCCCCc
Confidence 999999999999999999986 89999999999999999999765 3557899999999999999999999999
Q ss_pred hHHhhhccCCCCc-ccEEEecCCCCCCCCCCCCCCCCCCCCeEEEEeecCCCceEEEEE----EEEecc---CC-Ce--e
Q 036374 563 DYIKMLCGMGYSV-NKIRLISGDNSSCPEGTSIATKDLNLPSIAAQVEVHNPFSIKFLR----TVTNVG---LA-NT--T 631 (706)
Q Consensus 563 ~~~~~lc~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lN~psi~~~~~~~~~~~~~~~r----tv~n~g---~~-~~--t 631 (706)
+++.|+|..+... ..|.+- +. .+. ...+++. ++.|.. .. .. .
T Consensus 533 ~~v~f~~~v~~~~~rgIylR--~~-~~~------------------------~~~~~tv~V~p~f~~~~~~~~~~~i~f~ 585 (1354)
T 3lxu_X 533 NMLRFSVRVGNNADKGIHLR--QG-VQR------------------------NSIDYNVYIEPIFYNDKEADPKDKFNFN 585 (1354)
T ss_dssp GGEEEEEEETTTTBSSEEEC--SS-CCC------------------------SCEEEEEEEEEEESSCSCSSSTTCSCCC
T ss_pred cceEEEEEecCCCCCceEEe--cc-ccC------------------------CceEEEEEEeeeecCcccCChhhccceE
Confidence 9999999988543 232221 11 010 1222333 331111 11 11 2
Q ss_pred EEEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEEEecccCCCceEEEEEEEEc-----CCceEEeeEEEEEeccc
Q 036374 632 YKAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDGAILQANHTVSASLLWSD-----GTHNVRSPIVVYTNQEF 703 (706)
Q Consensus 632 y~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~-----~~~~v~~P~~~~~~~~~ 703 (706)
-++.+....+-+. .|+.|.+ .++.++|.|+|+.+..+ -+.+++.|..-| .+..+|+||.|.....+
T Consensus 586 ~~l~L~~t~~wv~---~p~~l~l--~~~~r~~~v~vDp~~L~-~G~h~~~v~~~D~~~~~~gp~f~ipvTv~~P~~~ 656 (1354)
T 3lxu_X 586 VRLNLIASQPWVQ---CGAFLDL--SYGTRSIAVRVDPTGLQ-PGVHSAVIRAYDTDCVQKGSLFEIPVTVVQPHVL 656 (1354)
T ss_dssp CEEEEEESSTTEE---ECSCEEC--TTSCEEEEEEECGGGCC-SEEEEEEEEEEESSCTTSCCSEEEEEEEEECBCC
T ss_pred EEEEEecCCCcee---cccceee--cCCCceEEEEECCCCCC-CcceeEEEEEEEcCCcccCceEEeeEEEEeeeec
Confidence 3334444233333 3888877 68899999999998764 457999998765 35789999999876644
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-50 Score=426.55 Aligned_cols=269 Identities=23% Similarity=0.302 Sum_probs=220.3
Q ss_pred cccCCccccccCCCCCC--CcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCccc
Q 036374 86 DFMGFPETVKREPTVES--DMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTRE 163 (706)
Q Consensus 86 ~~ig~~~~~~~~~~~G~--GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D 163 (706)
+.|+++ .+|+.+ +|+ ||+|||||||||++||+|.+ +...+.+|..+. . . ....+..|
T Consensus 13 ~~i~~~-~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~-------------~~~~~~~~~~~~-~-~----~~~~~~~d 71 (320)
T 2z30_A 13 ERVKAP-SVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAA-------------NIAWCVSTLRGK-V-S----TKLRDCAD 71 (320)
T ss_dssp HHTTCG-GGTTTC-CSCCTTCEEEEEESCBCTTCTTTGG-------------GEEEEEECGGGC-C-B----CCHHHHBC
T ss_pred hhcChH-HHHHhc-CCCcCCeEEEEECCCCCCCChhHhc-------------ccccCccccCCc-c-C----CCCCCCCC
Confidence 457888 999988 999 99999999999999999974 222222221110 0 0 00012356
Q ss_pred ccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC-CCHHHHHHHHHHHHHC------------
Q 036374 164 YQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-CNEADILAAFDDAIAD------------ 230 (706)
Q Consensus 164 ~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~ai~~------------ 230 (706)
. .||||||||||+|.. ++ .| +.||||+|+|+.+|+++ ..+ +..++++++|+||++.
T Consensus 72 ~-~gHGT~vAgiia~~~-n~---~g-----~~GvAp~a~l~~~~v~~-~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~ 140 (320)
T 2z30_A 72 Q-NGHGTHVIGTIAALN-ND---IG-----VVGVAPGVQIYSVRVLD-ARGSGSYSDIAIGIEQAILGPDGVADKDGDGI 140 (320)
T ss_dssp S-SSHHHHHHHHHHCCS-SS---BS-----CCCSSTTCEEEEEECSC-TTSEEEHHHHHHHHHHHHHTTTTCSCTTSSSC
T ss_pred C-CCCHHHHHHHHHccc-CC---Cc-----eEeeCCCCEEEEEEeeC-CCCCccHHHHHHHHHHHHhCcccccccccccc
Confidence 6 899999999999973 11 12 38999999999999998 444 7788999999999987
Q ss_pred --------CCcEEEEcccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeee
Q 036374 231 --------GVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDK 302 (706)
Q Consensus 231 --------gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~ 302 (706)
+++|||||||... ....+..++.++.++|++||+||||+|.....++...|++|+|||++.+
T Consensus 141 ~~~~~~~~~~~Vin~S~G~~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~------ 210 (320)
T 2z30_A 141 IAGDPDDDAAEVISMSLGGPA----DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN------ 210 (320)
T ss_dssp CTTCTTSCCCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT------
T ss_pred cccccccCCceEEEecCCCCC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEeeCCC------
Confidence 9999999999973 2356777888899999999999999998766778888999999997633
Q ss_pred EEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEE
Q 036374 303 AILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSI 382 (706)
Q Consensus 303 ~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i 382 (706)
T Consensus 211 -------------------------------------------------------------------------------- 210 (320)
T 2z30_A 211 -------------------------------------------------------------------------------- 210 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCc
Q 036374 383 QPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQ 462 (706)
Q Consensus 383 ~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~ 462 (706)
+.++.||++|| +|+|||++
T Consensus 211 ---------------------------------------------------~~~~~~S~~g~----------~v~APG~~ 229 (320)
T 2z30_A 211 ---------------------------------------------------DNIASFSNRQP----------EVSAPGVD 229 (320)
T ss_dssp ---------------------------------------------------SCBCTTSCSSC----------SEEEECSS
T ss_pred ---------------------------------------------------CCcCcccCCCC----------CEEeCCCC
Confidence 35788999997 78999999
Q ss_pred EEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhC-------------CCCCHHHHHHHHHhcccccC
Q 036374 463 ILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFH-------------PDWSPSSIKSALMTTALLMN 529 (706)
Q Consensus 463 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-------------P~lsp~~ik~~L~~TA~~~~ 529 (706)
|+++++ .+.|..++|||||||||||++|||+|++ |.|++.+||++|++||+++.
T Consensus 230 i~s~~~-------------~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~~ta~~~~ 296 (320)
T 2z30_A 230 ILSTYP-------------DDSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLG 296 (320)
T ss_dssp EEEEET-------------TTEEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHHHHHSBCCS
T ss_pred eEEecc-------------CCCeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHHHhhCccCC
Confidence 999987 3569999999999999999999999999 99999999999999999875
Q ss_pred CCCCCCCCCCCCCCCCCccccCCc
Q 036374 530 GTVNRGREFDYGSGHIDPVKATNP 553 (706)
Q Consensus 530 ~~~~~~~~~~~G~G~id~~~Al~~ 553 (706)
. +..+..||+|+||+.+|++.
T Consensus 297 ~---~g~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 297 P---TGWDADYGYGVVRAALAVQA 317 (320)
T ss_dssp S---SSSBTTTBTCBCCHHHHHHH
T ss_pred C---CCCCCCcCCceeCHHHHHHH
Confidence 4 45677899999999999875
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=428.75 Aligned_cols=277 Identities=24% Similarity=0.222 Sum_probs=220.4
Q ss_pred cccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCC-Ccccc
Q 036374 86 DFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGIN-TTREY 164 (706)
Q Consensus 86 ~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~-~~~D~ 164 (706)
+..|++ ++|+.+..++||+|||||||||++||+|.+..+ .....|. .+.. ...|.
T Consensus 6 ~i~G~~-~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~~~------------~~~~~~~-----------~~~~~~~~d~ 61 (306)
T 4h6w_A 6 NIPGLK-KLWSETRGDPKICVAVLDGIVDQNHPCFIGADL------------TRLPSLV-----------SGEANANGSM 61 (306)
T ss_dssp -CTTHH-HHHHHCSCCTTCEEEEESSCCCTTSGGGTTCEE------------EECC---------------------CCC
T ss_pred CCcCHH-HHHhhhCCCCCCEEEEEcCCCCCCChhHcCCcc------------cCCCccc-----------CCCCCCCCCC
Confidence 345778 999988777999999999999999999975311 1111110 1112 22355
Q ss_pred cCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCC-CCCHHHHHHHHHHHHHCCCcEEEEcccCCC
Q 036374 165 QLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPW-PCNEADILAAFDDAIADGVDIILTGATYGF 243 (706)
Q Consensus 165 ~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~-g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~ 243 (706)
.||||||||||+|+... .+.||||+|+|+.+|++.+.. .+....++++|+||++.+++|||+|||...
T Consensus 62 -~gHGThVAGiiag~~~~----------~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~s~g~~~ 130 (306)
T 4h6w_A 62 -STHGTHVASIIFGQHDS----------PVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQLT 130 (306)
T ss_dssp -CHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEECCCEEE
T ss_pred -CCchHHHHHHHHccccC----------CcceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeeccccccc
Confidence 89999999999987421 238999999999999987333 377888999999999999999999999753
Q ss_pred CCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCC
Q 036374 244 AFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKG 323 (706)
Q Consensus 244 ~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 323 (706)
........+..++..+.++|+++|++|||+|......+...+++++|||++.+
T Consensus 131 ~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~--------------------------- 183 (306)
T 4h6w_A 131 DAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ--------------------------- 183 (306)
T ss_dssp SSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT---------------------------
T ss_pred cCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC---------------------------
Confidence 34445567788888999999999999999998776777788999999987643
Q ss_pred ceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechh
Q 036374 324 NKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKME 403 (706)
Q Consensus 324 ~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~ 403 (706)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCccc
Q 036374 404 DFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFV 483 (706)
Q Consensus 404 ~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~ 483 (706)
+.+++||++|+.. .||||+|||++|+++.+ ++
T Consensus 184 ------------------------------~~~~~~s~~g~~~-----~~~di~APG~~i~s~~~-------------~~ 215 (306)
T 4h6w_A 184 ------------------------------GKPVDFSNWGDAY-----QKQGILAPGKDILGAKP-------------NG 215 (306)
T ss_dssp ------------------------------SCBCSSSCBCHHH-----HHHEEEEECSSEEEECT-------------TS
T ss_pred ------------------------------CCccccccccCCc-----CcceeecCCcCcccccC-------------CC
Confidence 3467889998643 58899999999999987 35
Q ss_pred ceeEeccccchhHHHHHHHHHHHh----hCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCCc
Q 036374 484 KYNILSGTSIASAFAAGAAAYVRS----FHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATNP 553 (706)
Q Consensus 484 ~y~~~sGTSmAaP~VAG~aALl~~----~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~~ 553 (706)
.|..++|||||||||||++|||++ ++|.|+|+|||++|++||+++... .......||+|+||+.+|++.
T Consensus 216 ~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~-~~~~~~~~G~G~ln~~~Av~~ 288 (306)
T 4h6w_A 216 GTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPK-DTDDQSRCLMGKLNILDAIEH 288 (306)
T ss_dssp CEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTT-TCSCGGGGTTCBCCHHHHHHH
T ss_pred ceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCC-CCCCCCCcceeecCHHHHHHH
Confidence 699999999999999999999986 469999999999999999997652 122345799999999999874
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-50 Score=432.48 Aligned_cols=276 Identities=20% Similarity=0.140 Sum_probs=219.6
Q ss_pred cccCCccccccCCCCCC--CcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCccc
Q 036374 86 DFMGFPETVKREPTVES--DMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTRE 163 (706)
Q Consensus 86 ~~ig~~~~~~~~~~~G~--GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D 163 (706)
+.++++ .+|+. .+|+ ||+||||||||| +||+|.+. ...+++|..+.. .+. ...+.|
T Consensus 28 ~~i~~~-~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~-------------~~~~~~~~~~~~-----~~~-~~~~~d 85 (347)
T 2iy9_A 28 DAIGLT-ETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS-------------EFAKFSFTQDGS-----PFP-VKKSEA 85 (347)
T ss_dssp HHHTCC-HHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC-------------EEEEEECBTTCC-----SSC-CSSSHH
T ss_pred hhCChH-HHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC-------------cccCCcccCCCC-----CCC-CCCCCC
Confidence 357888 89997 8999 999999999999 99999642 222233322110 000 124566
Q ss_pred ccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHC------CCcEEEE
Q 036374 164 YQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIAD------GVDIILT 237 (706)
Q Consensus 164 ~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~------gv~VIN~ 237 (706)
. .||||||||||+|. .|. .||||+|+|+.+|+++ ..+.. ++++||++|++. |++||||
T Consensus 86 ~-~gHGT~vAgiia~~-------~g~-----~GvAp~a~l~~~~v~~-~~~~~--~~~~ai~~a~~~~~~~~~~~~Vin~ 149 (347)
T 2iy9_A 86 L-YIHGTAMASLIASR-------YGI-----YGVYPHALISSRRVIP-DGVQD--SWIRAIESIMSNVFLAPGEEKIINI 149 (347)
T ss_dssp H-HHHHHHHHHHHHCS-------SSS-----CCSSTTCEEEEEECCS-SBCTT--HHHHHHHHHHTCTTSCTTEEEEEEE
T ss_pred C-CCcHHHHHHHHhcc-------cCC-----cccCCCCEEEEEEEec-CCCHH--HHHHHHHHHHhhhhcccCCceEEEe
Confidence 7 89999999999997 122 9999999999999998 43332 999999999999 9999999
Q ss_pred cccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCC-------CCCcccCCC----------ceEEEccccC--Ccc
Q 036374 238 GATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPK-------PASTVVVAP----------WILTVAGSSI--DRP 298 (706)
Q Consensus 238 SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~-------~~~~~~~~p----------~vitVga~~~--~~~ 298 (706)
|||... .......+..++..+.++|++||+||||+|.. ...+++..+ ++|+|||++. +..
T Consensus 150 S~G~~~-~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~Vga~~~~~~g~ 228 (347)
T 2iy9_A 150 SGGQKG-VASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRKGE 228 (347)
T ss_dssp SSCBCC-C-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEEEEECCCCTTS
T ss_pred ccccCC-CCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEEEEcccCCCCc
Confidence 999862 23456778888889999999999999999975 334566777 9999999875 210
Q ss_pred eeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCc
Q 036374 299 FIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGA 378 (706)
Q Consensus 299 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga 378 (706)
..
T Consensus 229 ~~------------------------------------------------------------------------------ 230 (347)
T 2iy9_A 229 TP------------------------------------------------------------------------------ 230 (347)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred ee------------------------------------------------------------------------------
Confidence 00
Q ss_pred eEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEe
Q 036374 379 LGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISA 458 (706)
Q Consensus 379 ~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~A 458 (706)
...+.++.||++||+ ||||+|
T Consensus 231 ----------------------------------------------------~~~~~~~~fS~~G~~-------~~di~A 251 (347)
T 2iy9_A 231 ----------------------------------------------------VLHGGGITGSRFGNN-------WVDIAA 251 (347)
T ss_dssp ----------------------------------------------------CBCCCSSSCBCBCTT-------TCSEEE
T ss_pred ----------------------------------------------------cccCCCCCCCCCCCC-------CCEEEe
Confidence 001346799999994 679999
Q ss_pred cCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCC
Q 036374 459 PAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREF 538 (706)
Q Consensus 459 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~ 538 (706)
||++|+++++ ++.|..++|||||||||||++|||+|++|+|++.+||++|++||+++... ...
T Consensus 252 PG~~i~s~~~-------------~~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~----~~~ 314 (347)
T 2iy9_A 252 PGQNITFLRP-------------DAKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSL----VDK 314 (347)
T ss_dssp ECSSEEEECT-------------TSCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECGGG----TTT
T ss_pred CCCCeEeecC-------------CCCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCCC----CCc
Confidence 9999999987 35699999999999999999999999999999999999999999987652 236
Q ss_pred CCCCCCCCccccCCcC
Q 036374 539 DYGSGHIDPVKATNPG 554 (706)
Q Consensus 539 ~~G~G~id~~~Al~~~ 554 (706)
.||+|+||+.+|++..
T Consensus 315 ~~G~G~ld~~~A~~~~ 330 (347)
T 2iy9_A 315 VTEGRVLNAEKAISMF 330 (347)
T ss_dssp SGGGEECCHHHHHHHH
T ss_pred cccCCEecHHHHHHHH
Confidence 8999999999999863
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=428.35 Aligned_cols=285 Identities=22% Similarity=0.263 Sum_probs=222.9
Q ss_pred cCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCce------------eEeeeec
Q 036374 88 MGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNK------------IIGARYY 155 (706)
Q Consensus 88 ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k------------~ig~~~~ 155 (706)
++++ .+|+.+++|+||+||||||||| +||+|.+.- ..+++|..+.. .-...++
T Consensus 19 i~~~-~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~-------------~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 83 (340)
T 3lpc_A 19 VKAD-KVWDMGFTGQNVVVAVVDTGIL-HHRDLNANV-------------LPGYDFISNSQISLDGDGRDADPFDEGDWF 83 (340)
T ss_dssp CCHH-HHHHHTCSCTTCEEEEEESCBC-CCTTTGGGB-------------CCCEECCCCHHHHCSSSSSBSCCBCCCCCB
T ss_pred CCHH-HHHHhcCCCCCeEEEEEcCCCC-CChhhhccc-------------ccCccccCCccccccCCCccCCcccccccc
Confidence 6777 9999999999999999999998 999997531 11122211100 0000000
Q ss_pred C-----C----CCCcccccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHH
Q 036374 156 S-----G----INTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDD 226 (706)
Q Consensus 156 ~-----~----~~~~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ 226 (706)
. + .....|. .||||||||||+|...++.. +.||||+|+|+.+|++. ..++..++++++|+|
T Consensus 84 ~~~~~~~~~~~~~~~~d~-~gHGT~vAgiia~~~~~~~g--------~~GvAp~a~l~~~~v~~-~~~~~~~~~~~ai~~ 153 (340)
T 3lpc_A 84 DNWACGGRPDPRKERSDS-SWHGSHVAGTIAAVTNNRIG--------VAGVAYGAKVVPVRALG-RCGGYDSDISDGLYW 153 (340)
T ss_dssp CTTTTSCTTCGGGSCBCC-CCHHHHHHHHHHCCCSSSSS--------CCCTTTTSEEEEEECCB-TTBCCHHHHHHHHHH
T ss_pred ccccccCCCCcccCCCCC-CCCHHHHHHHHHccCCCCCc--------ceeecCCCEEEEEEEec-CCCCcHHHHHHHHHH
Confidence 0 0 1124567 89999999999998643322 28999999999999998 666889999999999
Q ss_pred HHH----------CCCcEEEEcccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcccCCCceEEEccccC
Q 036374 227 AIA----------DGVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPA-STVVVAPWILTVAGSSI 295 (706)
Q Consensus 227 ai~----------~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~~~~p~vitVga~~~ 295 (706)
|++ .+++|||||||... .....+..++.++.++|++||+||||+|.... ..+...+++|+|||++.
T Consensus 154 a~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~ 230 (340)
T 3lpc_A 154 AAGGRIAGIPENRNPAKVINMSLGSDG---QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTS 230 (340)
T ss_dssp HHTCCCTTSCCCSSCCSEEEECCCEES---CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECT
T ss_pred HhcccccccccccCCCeEEEeCcCCCC---CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCC
Confidence 998 89999999999862 22345677788889999999999999987643 35667899999998764
Q ss_pred CcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheee
Q 036374 296 DRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFR 375 (706)
Q Consensus 296 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~ 375 (706)
+
T Consensus 231 ~------------------------------------------------------------------------------- 231 (340)
T 3lpc_A 231 R------------------------------------------------------------------------------- 231 (340)
T ss_dssp T-------------------------------------------------------------------------------
T ss_pred C-------------------------------------------------------------------------------
Confidence 3
Q ss_pred cCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCc
Q 036374 376 VGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPD 455 (706)
Q Consensus 376 ~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPD 455 (706)
+.++.||++|| |||
T Consensus 232 ----------------------------------------------------------~~~~~~S~~g~--------~~d 245 (340)
T 3lpc_A 232 ----------------------------------------------------------GIRASFSNYGV--------DVD 245 (340)
T ss_dssp ----------------------------------------------------------SSBCTTCCBST--------TCC
T ss_pred ----------------------------------------------------------CCcCCCCCCCC--------Cce
Confidence 45788999998 459
Q ss_pred eEecCCcEEecccCCCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhh-C---CCCCHHHHHHHHHhcccccCCC
Q 036374 456 ISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSF-H---PDWSPSSIKSALMTTALLMNGT 531 (706)
Q Consensus 456 i~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-~---P~lsp~~ik~~L~~TA~~~~~~ 531 (706)
|+|||++|+++++.... ......|..++|||||||+|||++|||+|+ + |.|++++||++|++||+++..
T Consensus 246 i~ApG~~i~s~~~~~~~------~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~~- 318 (340)
T 3lpc_A 246 LAAPGQDILSTVDSGTR------RPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG- 318 (340)
T ss_dssp EEEECSSEEEEEESCSS------SCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCSS-
T ss_pred EEecCCCeecccCCCCc------CCCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCCC-
Confidence 99999999999875321 111356999999999999999999999998 5 999999999999999998754
Q ss_pred CCCCCCCCCCCCCCCccccCCcCc
Q 036374 532 VNRGREFDYGSGHIDPVKATNPGL 555 (706)
Q Consensus 532 ~~~~~~~~~G~G~id~~~Al~~~l 555 (706)
..+..||+|+||+.+||+..|
T Consensus 319 ---~~~~~~G~G~vd~~~Av~~~l 339 (340)
T 3lpc_A 319 ---RLDRALGSGIVDAEAAVNSVL 339 (340)
T ss_dssp ---CCSSCCCSSBCCHHHHHHHHH
T ss_pred ---CCCCCcccceecHHHHHHHHh
Confidence 356789999999999997643
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-49 Score=437.95 Aligned_cols=297 Identities=24% Similarity=0.254 Sum_probs=229.3
Q ss_pred ccccCCcccccc-CCCCCCCcEEEEEccccCC------CCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCC
Q 036374 85 WDFMGFPETVKR-EPTVESDMIIGVLDNGIWP------ESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSG 157 (706)
Q Consensus 85 ~~~ig~~~~~~~-~~~~G~GVvVgVIDtGid~------~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~ 157 (706)
.+.++++ .+|+ .+++|+||+|||||||||. .||+|.+ + ++..++|..
T Consensus 5 ~~~i~~~-~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~-------------~------------i~~~~~~~~ 58 (434)
T 1wmd_A 5 RGIVKAD-VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRG-------------K------------ITALYALGR 58 (434)
T ss_dssp HHHTTHH-HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTT-------------C------------EEEEEETTT
T ss_pred hhhhCch-hhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCC-------------C------------EeeeccccC
Confidence 4567888 8997 7999999999999999999 7999963 1 222233332
Q ss_pred CCCcccccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCC---CHHHHHHHHHHHHHCCCcE
Q 036374 158 INTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPC---NEADILAAFDDAIADGVDI 234 (706)
Q Consensus 158 ~~~~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~---~~~~i~~ai~~ai~~gv~V 234 (706)
..++.|. .||||||||||+|+.. + +.||||+|+|+++|+++ ..+. ..+++.++|++|++.|++|
T Consensus 59 ~~~~~d~-~gHGT~VAgiiag~g~------~-----~~GvAp~a~l~~~~v~~-~~g~~~~~~~~~~~ai~~a~~~g~~V 125 (434)
T 1wmd_A 59 TNNANDT-NGHGTHVAGSVLGNGS------T-----NKGMAPQANLVFQSIMD-SGGGLGGLPSNLQTLFSQAYSAGARI 125 (434)
T ss_dssp TTCCCCS-SSHHHHHHHHHHCCSS------S-----SCCSSTTSEEEEEECCC-TTSSCTTSCSSHHHHHHHHHHTTCSE
T ss_pred CCCCCCC-CCcHHHHHHHHHcCCC------C-----ceeeCCCCEEEEEEeec-CCCccccccHHHHHHHHHHHhcCCeE
Confidence 3456777 9999999999998631 1 38999999999999998 4442 4568999999999999999
Q ss_pred EEEcccCCCCCCChhhHHHHHHHHH-HhCCcEEEEecCCCCCCCC--CcccCCCceEEEccccCCcceeeeEEeCCCeEE
Q 036374 235 ILTGATYGFAFDFAEDAVAIGAFHA-MEKGILTAVPTGNMGPKPA--STVVVAPWILTVAGSSIDRPFIDKAILGDGTTL 311 (706)
Q Consensus 235 IN~SlG~~~~~~~~~~~~~~a~~~a-~~~Gv~vV~AAGN~G~~~~--~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~ 311 (706)
||||||......+ ++...+++++ .++|+++|+||||+|.... ..+..++++|+|||++..+.....
T Consensus 126 in~S~G~~~~~~~--~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~~~--------- 194 (434)
T 1wmd_A 126 HTNSWGAAVNGAY--TTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGS--------- 194 (434)
T ss_dssp EEECCCBCCTTCC--CHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGGCG---------
T ss_pred EEecCCCCcCCcC--CHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCcccCc---------
Confidence 9999998732222 3445555555 5799999999999997643 345678999999998754310000
Q ss_pred eeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCC
Q 036374 312 VGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSH 391 (706)
Q Consensus 312 ~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~ 391 (706)
.
T Consensus 195 ---------~---------------------------------------------------------------------- 195 (434)
T 1wmd_A 195 ---------Y---------------------------------------------------------------------- 195 (434)
T ss_dssp ---------G----------------------------------------------------------------------
T ss_pred ---------c----------------------------------------------------------------------
Confidence 0
Q ss_pred CcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCC
Q 036374 392 PTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGW 471 (706)
Q Consensus 392 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~ 471 (706)
....+.+++||++||+. ++++||||+|||++|+++++...
T Consensus 196 --------------------------------------~~~~~~~a~fS~~G~~~--~g~~kpdi~ApG~~i~s~~~~~~ 235 (434)
T 1wmd_A 196 --------------------------------------ADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLA 235 (434)
T ss_dssp --------------------------------------GSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTC
T ss_pred --------------------------------------cCCCCccccccCCCCCC--CCCCCceEEcCCCCeEecCCCCC
Confidence 01235789999999998 89999999999999999986422
Q ss_pred CCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCC-----CHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCC
Q 036374 472 GPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDW-----SPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546 (706)
Q Consensus 472 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~l-----sp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id 546 (706)
....+ .....+.|..++|||||||||||+||||+|++|++ ++++||++|++||+++.. ...+..||||+||
T Consensus 236 ~~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~---~~~~~~~G~G~vd 311 (434)
T 1wmd_A 236 PDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL---GYPNGNQGWGRVT 311 (434)
T ss_dssp CGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS---CSSCTTTTTCBCC
T ss_pred CCccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCC---CCCCccCCcCeEe
Confidence 10000 00114579999999999999999999999999876 999999999999998643 3467899999999
Q ss_pred ccccCCcC
Q 036374 547 PVKATNPG 554 (706)
Q Consensus 547 ~~~Al~~~ 554 (706)
+.+|++..
T Consensus 312 ~~~a~~~~ 319 (434)
T 1wmd_A 312 LDKSLNVA 319 (434)
T ss_dssp HHHHHTCE
T ss_pred HHHhcccc
Confidence 99999754
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-48 Score=401.86 Aligned_cols=240 Identities=21% Similarity=0.260 Sum_probs=201.7
Q ss_pred cCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCC
Q 036374 88 MGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLG 167 (706)
Q Consensus 88 ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~g 167 (706)
+.++ .+|..+.+|+||+|||||||||++||+|.+ +...+++|. ....++.|. .|
T Consensus 16 ~~~~-~aw~~~~~G~gv~VaViDtGvd~~h~~l~~-------------~~~~~~~~~-----------~~~~~~~d~-~g 69 (284)
T 1sh7_A 16 LPLD-RNYNANFDGFGVTAYVIDTGVNNNHEEFGG-------------RSVSGYDFV-----------DNDADSSDC-NG 69 (284)
T ss_dssp SSCC-SBCCCSCCCTTCEEEEEESCCCTTCTTTTT-------------CEEEEEETT-----------TTBSCCCCS-SS
T ss_pred cCch-hhhhcCCCCCCCEEEEEcCCCCCCChhHcC-------------Ccccccccc-----------CCCCCCCCC-CC
Confidence 3456 799999999999999999999999999964 222223332 112456777 99
Q ss_pred CcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHH--CCCcEEEEcccCCCCC
Q 036374 168 HGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIA--DGVDIILTGATYGFAF 245 (706)
Q Consensus 168 HGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~--~gv~VIN~SlG~~~~~ 245 (706)
|||||||||+|.. .||||+|+|+.+|++++...++.+++++||+|+++ .+++|||||||..
T Consensus 70 HGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~~~Vin~S~G~~--- 132 (284)
T 1sh7_A 70 HGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGG--- 132 (284)
T ss_dssp HHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCSSEEEEECCCBS---
T ss_pred cHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCCCcEEEeCCCCC---
Confidence 9999999999873 79999999999999983334788999999999998 4799999999987
Q ss_pred CChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCc
Q 036374 246 DFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPA-STVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGN 324 (706)
Q Consensus 246 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 324 (706)
....+..++.++.++|+++|+||||+|.... ..+...+++|+|||++.+
T Consensus 133 --~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------------------------- 182 (284)
T 1sh7_A 133 --QSTALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTSS---------------------------- 182 (284)
T ss_dssp --CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECTT----------------------------
T ss_pred --CCHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecCC----------------------------
Confidence 2357788888899999999999999987542 446678999999987633
Q ss_pred eeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhh
Q 036374 325 KFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMED 404 (706)
Q Consensus 325 ~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~ 404 (706)
T Consensus 183 -------------------------------------------------------------------------------- 182 (284)
T 1sh7_A 183 -------------------------------------------------------------------------------- 182 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccc
Q 036374 405 FERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVK 484 (706)
Q Consensus 405 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~ 484 (706)
+.++.||++||.. ||+|||++|+++++. +.
T Consensus 183 -----------------------------~~~~~~S~~G~~~--------di~ApG~~i~s~~~~-------------~~ 212 (284)
T 1sh7_A 183 -----------------------------DSRSSFSNWGSCV--------DLFAPGSQIKSAWYD-------------GG 212 (284)
T ss_dssp -----------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECTT-------------SS
T ss_pred -----------------------------CCcCcccCCCCcc--------EEEeccCCeEEecCC-------------CC
Confidence 4578899999976 999999999998863 46
Q ss_pred eeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCC
Q 036374 485 YNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNG 530 (706)
Q Consensus 485 y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~ 530 (706)
|..++|||||||||||++|||+|++|+|+++|||++|++||++..-
T Consensus 213 ~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 258 (284)
T 1sh7_A 213 YKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENKV 258 (284)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred EEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCc
Confidence 9999999999999999999999999999999999999999998543
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-47 Score=396.58 Aligned_cols=241 Identities=23% Similarity=0.268 Sum_probs=201.6
Q ss_pred cCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCC
Q 036374 88 MGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLG 167 (706)
Q Consensus 88 ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~g 167 (706)
+.++ .+|..+++|+||+|+|||||||++||+|.+ +...+++|.. +..++.|. .|
T Consensus 18 ~~~~-~~~~~~~~G~gv~VaViDtGid~~Hpdl~~-------------~~~~~~d~~~-----------~~~~~~d~-~g 71 (278)
T 2b6n_A 18 LPLD-NNYHTDYDGSGVTAFVIDTGVLNTHNEFGG-------------RASSGYDFID-----------NDYDATDC-NG 71 (278)
T ss_dssp SSCC-SEEECSCCCTTCEEEEEESCCCTTCGGGTT-------------CEEEEEETTT-----------TBSCCCCS-SS
T ss_pred CCcc-hhcccCCCCCCCEEEEEeCCCCCCChhHhc-------------ccccCeecCC-----------CCCCCCCC-CC
Confidence 3455 789999999999999999999999999964 2222333321 12456777 99
Q ss_pred CcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHH--CCCcEEEEcccCCCCC
Q 036374 168 HGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIA--DGVDIILTGATYGFAF 245 (706)
Q Consensus 168 HGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~--~gv~VIN~SlG~~~~~ 245 (706)
|||||||||+|.. .||||+|+|+.+|++++...++.++++++|+|+++ .+++|||||||...
T Consensus 72 HGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g~~Vin~S~G~~~-- 135 (278)
T 2b6n_A 72 HGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGA-- 135 (278)
T ss_dssp HHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC--
T ss_pred cHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCCCeEEEECCCCCc--
Confidence 9999999999862 79999999999999984344788999999999998 69999999999872
Q ss_pred CChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCc
Q 036374 246 DFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPA-STVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGN 324 (706)
Q Consensus 246 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 324 (706)
...+..++.++.++|+++|+||||+|.... ..+...+++|+|||++.+
T Consensus 136 ---~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------------------------- 184 (278)
T 2b6n_A 136 ---SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTSN---------------------------- 184 (278)
T ss_dssp ---CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT----------------------------
T ss_pred ---CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCCC----------------------------
Confidence 356778888899999999999999987643 346678999999987643
Q ss_pred eeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhh
Q 036374 325 KFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMED 404 (706)
Q Consensus 325 ~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~ 404 (706)
T Consensus 185 -------------------------------------------------------------------------------- 184 (278)
T 2b6n_A 185 -------------------------------------------------------------------------------- 184 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccc
Q 036374 405 FERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVK 484 (706)
Q Consensus 405 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~ 484 (706)
+.++.||++||.. ||+|||++|++++... .+.
T Consensus 185 -----------------------------~~~~~~S~~G~~~--------di~ApG~~i~s~~~~~-----------~~~ 216 (278)
T 2b6n_A 185 -----------------------------DSRSSFSNYGTCL--------DIYAPGSSITSSWYTS-----------NSA 216 (278)
T ss_dssp -----------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECTTS-----------TTC
T ss_pred -----------------------------CCcCCcCCCCCCC--------eEEeCCCCeECcccCC-----------CCC
Confidence 3578899999865 9999999999988642 256
Q ss_pred eeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccC
Q 036374 485 YNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMN 529 (706)
Q Consensus 485 y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~ 529 (706)
|..++|||||||||||++|||+|++|+|+++|||++|++||++..
T Consensus 217 ~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 261 (278)
T 2b6n_A 217 TNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATADK 261 (278)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred EEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC
Confidence 899999999999999999999999999999999999999998743
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=390.87 Aligned_cols=240 Identities=22% Similarity=0.250 Sum_probs=202.9
Q ss_pred cCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCC
Q 036374 88 MGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLG 167 (706)
Q Consensus 88 ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~g 167 (706)
+++. .+|..+.+|+||+|||||||||++||+|.+. ...++ ++. ..++.|. .|
T Consensus 18 ~~~~-~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~-------------~~~~~------------~~~-~~~~~d~-~g 69 (276)
T 4dzt_A 18 LPLS-NSYTYTATGRGVNVYVIDTGIRTTHREFGGR-------------ARVGY------------DAL-GGNGQDC-NG 69 (276)
T ss_dssp SSCC-SCEECSCCCTTCEEEEEESCCCTTCGGGTTC-------------EEEEE------------ETT-SSCSCCS-SS
T ss_pred CCcc-cceecCCCCCCcEEEEEccCCCCCChhHccC-------------eeccc------------cCC-CCCCCCC-CC
Confidence 5566 8999999999999999999999999999642 11122 221 1345677 89
Q ss_pred CcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHC--CCcEEEEcccCCCCC
Q 036374 168 HGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIAD--GVDIILTGATYGFAF 245 (706)
Q Consensus 168 HGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~--gv~VIN~SlG~~~~~ 245 (706)
|||||||||+|.. .||||+|+|+.+|++++...+..++++++++|+++. +++|||||||...
T Consensus 70 HGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~vin~S~g~~~-- 133 (276)
T 4dzt_A 70 HGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGV-- 133 (276)
T ss_dssp HHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC--
T ss_pred CHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCCCeEEEECCCCCC--
Confidence 9999999999873 799999999999999844448899999999999986 9999999999862
Q ss_pred CChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCc-ccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCc
Q 036374 246 DFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPAST-VVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGN 324 (706)
Q Consensus 246 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~-~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 324 (706)
...+..++.++.++|+++|+||||+|...... +...+++|+|||++.+
T Consensus 134 ---~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------------------------- 182 (276)
T 4dzt_A 134 ---STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTSS---------------------------- 182 (276)
T ss_dssp ---CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT----------------------------
T ss_pred ---CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECCC----------------------------
Confidence 46778888899999999999999998765433 6678999999987533
Q ss_pred eeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhh
Q 036374 325 KFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMED 404 (706)
Q Consensus 325 ~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~ 404 (706)
T Consensus 183 -------------------------------------------------------------------------------- 182 (276)
T 4dzt_A 183 -------------------------------------------------------------------------------- 182 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccc
Q 036374 405 FERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVK 484 (706)
Q Consensus 405 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~ 484 (706)
+.++.||++||.. ||+|||++|++++... ...
T Consensus 183 -----------------------------~~~~~~S~~g~~~--------dv~ApG~~i~s~~~~~-----------~~~ 214 (276)
T 4dzt_A 183 -----------------------------DARASFSNYGSCV--------DLFAPGASIPSAWYTS-----------DTA 214 (276)
T ss_dssp -----------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECTTS-----------SSC
T ss_pred -----------------------------CCcCCcCCCCCCc--------eEEeCCCCeEccccCC-----------CCc
Confidence 4578999999977 9999999999998743 246
Q ss_pred eeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCC
Q 036374 485 YNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNG 530 (706)
Q Consensus 485 y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~ 530 (706)
|..++|||||||+|||++|||+|++|+|++++||++|++||++...
T Consensus 215 ~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 260 (276)
T 4dzt_A 215 TQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRL 260 (276)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred eEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCcc
Confidence 9999999999999999999999999999999999999999998644
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=392.71 Aligned_cols=240 Identities=23% Similarity=0.248 Sum_probs=201.2
Q ss_pred cccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccce
Q 036374 94 VKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMA 173 (706)
Q Consensus 94 ~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVA 173 (706)
.|. ..+|+||+|+|||||||++||+|.+. ...++ +|. .++.|. .|||||||
T Consensus 24 ~~~-~~~G~gv~VaViDsGvd~~H~~l~~~-------------~~~~~------------~~~--~~~~d~-~gHGT~vA 74 (279)
T 2pwa_A 24 YYD-ESAGQGSCVYVIDTGIEASHPEFEGR-------------AQMVK------------TYY--YSSRDG-NGHGTHCA 74 (279)
T ss_dssp ECC-TTTTTTEEEEEEESCCCTTCGGGTTC-------------EEEEE------------ESS--SCSSCS-SSHHHHHH
T ss_pred ccc-CCCCCCCEEEEEeCCCCCCChhHhCc-------------ccccc------------CCC--CCCCCC-CCCHHHHH
Confidence 565 37899999999999999999999642 22222 222 345677 99999999
Q ss_pred eecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCC-------cEEEEcccCCCCCC
Q 036374 174 SIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGV-------DIILTGATYGFAFD 246 (706)
Q Consensus 174 gi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv-------~VIN~SlG~~~~~~ 246 (706)
|||+|.. .||||+|+|+.+|++++...++.++++++|+|++++++ +|||||||..
T Consensus 75 giia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vin~S~G~~---- 136 (279)
T 2pwa_A 75 GTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG---- 136 (279)
T ss_dssp HHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE----
T ss_pred HHHHhcc--------------cccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccEEEecCCCC----
Confidence 9999862 79999999999999983333788999999999999887 9999999976
Q ss_pred ChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCce
Q 036374 247 FAEDAVAIGAFHAMEKGILTAVPTGNMGPKPA-STVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNK 325 (706)
Q Consensus 247 ~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 325 (706)
....+..++.++.++|+++|+||||+|.... ..+...+++|+|||++.+
T Consensus 137 -~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------------------------- 186 (279)
T 2pwa_A 137 -YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY----------------------------- 186 (279)
T ss_dssp -CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT-----------------------------
T ss_pred -CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecCC-----------------------------
Confidence 2357788888999999999999999997643 346678999999987643
Q ss_pred eeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhH
Q 036374 326 FPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDF 405 (706)
Q Consensus 326 ~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~ 405 (706)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 2pwa_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccce
Q 036374 406 ERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKY 485 (706)
Q Consensus 406 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y 485 (706)
+.++.||++||.. ||+|||++|+++++. +.|
T Consensus 187 ----------------------------~~~~~~S~~G~~~--------di~APG~~i~s~~~~-------------~~~ 217 (279)
T 2pwa_A 187 ----------------------------DRRSSFSNYGSVL--------DIFGPGTDILSTWIG-------------GST 217 (279)
T ss_dssp ----------------------------SBBCTTCCBSTTC--------CEEEECSSEEEEETT-------------TEE
T ss_pred ----------------------------CCcCCcCCCCCcc--------eEEEecCCeEEeecC-------------CCE
Confidence 4578899999965 999999999999873 468
Q ss_pred eEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCc
Q 036374 486 NILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDP 547 (706)
Q Consensus 486 ~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~ 547 (706)
..++|||||||||||++|||+|+ |++++.+||++|++||++... ..+|+|..|+
T Consensus 218 ~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~~-------~~~~~g~~n~ 271 (279)
T 2pwa_A 218 RSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDL-------SNIPFGTVNL 271 (279)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESCC-------BSCCTTSCCE
T ss_pred EEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccccc-------CCCCCCCccE
Confidence 99999999999999999999999 999999999999999998543 2467888876
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=421.11 Aligned_cols=289 Identities=15% Similarity=0.075 Sum_probs=216.9
Q ss_pred ccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccC
Q 036374 87 FMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQL 166 (706)
Q Consensus 87 ~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~ 166 (706)
.|+++ .+|..+++|+||+|||||||||++||+|.+.- ....+++|..+..- ......+.|. .
T Consensus 24 ~i~~~-~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~-----------~~~~~~d~~~~~~~-----p~~~~~~~d~-~ 85 (471)
T 1p8j_A 24 DLNVK-EAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY-----------DPGASFDVNDQDPD-----PQPRYTQMND-N 85 (471)
T ss_dssp SCCCH-HHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB-----------CGGGCEETTTTBSC-----CCCCCCTTCT-T
T ss_pred CCChH-HHHhcCCCCCCCEEEEEeCCcCCCChhHhhcc-----------CccCcccccCCCCC-----CCCccCCCCC-C
Confidence 37788 99999999999999999999999999997520 00112333222100 0000134577 8
Q ss_pred CCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHH-CCCcEEEEcccCCCCC
Q 036374 167 GHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIA-DGVDIILTGATYGFAF 245 (706)
Q Consensus 167 gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~-~gv~VIN~SlG~~~~~ 245 (706)
||||||||||||...++.. +.||||+|+|+.+|+++ +..+++++|++++++ .+++|||||||.....
T Consensus 86 gHGT~vAGiiaa~~~n~~g--------~~GvAp~a~i~~~rv~~----g~~~~~~~ai~~a~~~~~~~Vin~S~G~~~~~ 153 (471)
T 1p8j_A 86 RHGTRCAGEVAAVANNGVC--------GVGVAYNARIGGVRMLD----GEVTDAVEARSLGLNPNHIHIYSASWGPEDDG 153 (471)
T ss_dssp CHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECSS----SCCCHHHHHHHHTSCTTTCCEEEECCBSCCSS
T ss_pred CcHHHHHHHHHeeccCCCC--------CEEECCCCeEEEEEccC----CchhHHHHHHHhhhccCCCeEEEeccCcCCCC
Confidence 9999999999997543221 28999999999999987 346789999999999 9999999999986321
Q ss_pred C---ChhhHHHHHHHHHHh-----CCcEEEEecCCCCCCCCC----cccCCCceEEEccccCCcceeeeEEeCCCeEEee
Q 036374 246 D---FAEDAVAIGAFHAME-----KGILTAVPTGNMGPKPAS----TVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVG 313 (706)
Q Consensus 246 ~---~~~~~~~~a~~~a~~-----~Gv~vV~AAGN~G~~~~~----~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g 313 (706)
. .....+..++.++.+ +|++||+||||+|..... ....++++|+|||++.+
T Consensus 154 ~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~~----------------- 216 (471)
T 1p8j_A 154 KTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQF----------------- 216 (471)
T ss_dssp SCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTT-----------------
T ss_pred CcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccCC-----------------
Confidence 1 112334445555543 699999999999875322 12345889999987643
Q ss_pred eeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCc
Q 036374 314 DAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPT 393 (706)
Q Consensus 314 ~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~ 393 (706)
T Consensus 217 -------------------------------------------------------------------------------- 216 (471)
T 1p8j_A 217 -------------------------------------------------------------------------------- 216 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCC
Q 036374 394 PFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGP 473 (706)
Q Consensus 394 ~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~ 473 (706)
+.++.||++||.. ....+|...+||.+|+++...
T Consensus 217 ----------------------------------------g~~a~~S~~g~~~--~~~~~~~~~~~g~~i~st~~~---- 250 (471)
T 1p8j_A 217 ----------------------------------------GNVPWYSEACSST--LATTYSSGNQNEKQIVTTDLR---- 250 (471)
T ss_dssp ----------------------------------------SCCCTTCCBCTTC--CEEEECCCSTTSCCEEEEETT----
T ss_pred ----------------------------------------CCcccccCCCCcc--eEEeCCCCCCCCCCEEEeeCC----
Confidence 4578899999987 445556666667899998763
Q ss_pred CCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCC--------CCCCCCCCCCCCC
Q 036374 474 SNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTV--------NRGREFDYGSGHI 545 (706)
Q Consensus 474 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~--------~~~~~~~~G~G~i 545 (706)
+..|..++|||||||||||+||||+|++|+|++++||++|++||+++.... +...+..||+|+|
T Consensus 251 --------~~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n~~g~~~~~~~G~G~v 322 (471)
T 1p8j_A 251 --------QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSYGYGLL 322 (471)
T ss_dssp --------TEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECTTSCEEBTTTBTCBC
T ss_pred --------CCccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceecCCCcccCCCCCCEEE
Confidence 246899999999999999999999999999999999999999999876431 1113578999999
Q ss_pred CccccCCcCcc
Q 036374 546 DPVKATNPGLV 556 (706)
Q Consensus 546 d~~~Al~~~lv 556 (706)
|+.+|++....
T Consensus 323 da~~Av~~a~~ 333 (471)
T 1p8j_A 323 DAGAMVALAQN 333 (471)
T ss_dssp CHHHHHHHHHT
T ss_pred cHhHHHHHhhc
Confidence 99999986443
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=415.12 Aligned_cols=280 Identities=17% Similarity=0.132 Sum_probs=216.6
Q ss_pred ccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCc-cccc
Q 036374 87 FMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTT-REYQ 165 (706)
Q Consensus 87 ~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~-~D~~ 165 (706)
.|+++ .+|..+++|+||+|||||||||++||+|.+.- + ...+++|..+.. ...| .|.
T Consensus 40 ~i~~~-~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~-------~----~~~~~d~~~~~~---------~~~p~~d~- 97 (503)
T 2id4_A 40 DINVL-DLWYNNITGAGVVAAIVDDGLDYENEDLKDNF-------C----AEGSWDFNDNTN---------LPKPRLSD- 97 (503)
T ss_dssp SCCCH-HHHHTTCSCTTCEEEEEESCCCTTSTTTTTTB-------C----GGGCEETTTTBS---------CCCCCSTT-
T ss_pred ccChH-HHHhcCCCCCCeEEEEEeCCCCCCChhHhhcc-------c----ccCcccCCCCCC---------CCCCCCCC-
Confidence 46777 89999999999999999999999999997531 1 112334432210 1122 466
Q ss_pred CCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 036374 166 LGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAF 245 (706)
Q Consensus 166 ~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~ 245 (706)
.||||||||||||...++.. +.||||+|+|+.+|+++ . .++..++++||++|++.+ +|||||||.....
T Consensus 98 ~gHGT~vAGiiaa~~~n~~~--------~~GvAp~a~i~~~rv~~-~-~~~~~~~~~ai~~a~~~~-~Iin~S~G~~~~~ 166 (503)
T 2id4_A 98 DYHGTRCAGEIAAKKGNNFC--------GVGVGYNAKISGIRILS-G-DITTEDEAASLIYGLDVN-DIYSCSWGPADDG 166 (503)
T ss_dssp TTHHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECTT-S-CCCHHHHHHHTTTTTTTC-SEEEECEESCCSS
T ss_pred CChHHHHHHHHHhccCCCCC--------cEEECCCCEEEEEEeeC-C-CCChHHHHHHHHhHhhcC-CEEEeCCCcCCCC
Confidence 89999999999997533221 28999999999999997 2 367889999999999988 9999999986321
Q ss_pred C---ChhhHHHHHHHHHH-----hCCcEEEEecCCCCCCCC--Ccc--cCCCceEEEccccCCcceeeeEEeCCCeEEee
Q 036374 246 D---FAEDAVAIGAFHAM-----EKGILTAVPTGNMGPKPA--STV--VVAPWILTVAGSSIDRPFIDKAILGDGTTLVG 313 (706)
Q Consensus 246 ~---~~~~~~~~a~~~a~-----~~Gv~vV~AAGN~G~~~~--~~~--~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g 313 (706)
. .....+..++.++. .+|+++|+||||+|.... ..+ ..++++|+|||++.+
T Consensus 167 ~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~~----------------- 229 (503)
T 2id4_A 167 RHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK----------------- 229 (503)
T ss_dssp SCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECTT-----------------
T ss_pred ccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCCC-----------------
Confidence 1 12234556666665 379999999999986532 222 256789999987643
Q ss_pred eeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCc
Q 036374 314 DAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPT 393 (706)
Q Consensus 314 ~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~ 393 (706)
T Consensus 230 -------------------------------------------------------------------------------- 229 (503)
T 2id4_A 230 -------------------------------------------------------------------------------- 229 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEe----cCCcEEecccC
Q 036374 394 PFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISA----PAVQILAAYTG 469 (706)
Q Consensus 394 ~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~A----PG~~I~sa~~~ 469 (706)
+.++.||++||.. |++| ||..|+++...
T Consensus 230 ----------------------------------------~~~a~~S~~g~~~--------~~~a~~~gpG~~I~st~~~ 261 (503)
T 2id4_A 230 ----------------------------------------DLHPPYSEGCSAV--------MAVTYSSGSGEYIHSSDIN 261 (503)
T ss_dssp ----------------------------------------SCCCTTCCCCTTE--------EEEEECSBTTBCEEEECST
T ss_pred ----------------------------------------CCcCCcCCCCCcc--------eEeecCCCCCCceEeecCC
Confidence 3478899999987 8888 89999998542
Q ss_pred CCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCC-C--------CCCCCCCC
Q 036374 470 GWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGT-V--------NRGREFDY 540 (706)
Q Consensus 470 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~-~--------~~~~~~~~ 540 (706)
...|..++|||||||||||++|||+|++|+|++++||++|++||+++... . +...+..|
T Consensus 262 ------------~~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~~~~~g~~~~~~~ 329 (503)
T 2id4_A 262 ------------GRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRY 329 (503)
T ss_dssp ------------TCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEEBTTT
T ss_pred ------------CCceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCceecCCCCccCccc
Confidence 35689999999999999999999999999999999999999999987653 1 11235689
Q ss_pred CCCCCCccccCCcCcc
Q 036374 541 GSGHIDPVKATNPGLV 556 (706)
Q Consensus 541 G~G~id~~~Al~~~lv 556 (706)
|+|+||+.+|++....
T Consensus 330 G~G~vda~~Av~~a~~ 345 (503)
T 2id4_A 330 GFGKIDAHKLIEMSKT 345 (503)
T ss_dssp BTCBCCHHHHHHHHTS
T ss_pred CCcEecHHHHHHHHhc
Confidence 9999999999986443
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-45 Score=381.77 Aligned_cols=230 Identities=23% Similarity=0.281 Sum_probs=193.8
Q ss_pred ccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccc
Q 036374 93 TVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHM 172 (706)
Q Consensus 93 ~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThV 172 (706)
.+|... +|+||+|||||||||++||+|.+. . ...+.|. ....|. .||||||
T Consensus 24 ~~~~~~-~G~gv~VaViDtGvd~~h~~l~~~-------------~------------~~~~~~~--~~~~d~-~gHGT~v 74 (279)
T 3f7m_A 24 YAYDTS-AGAGACVYVIDTGVEDTHPDFEGR-------------A------------KQIKSYA--STARDG-HGHGTHC 74 (279)
T ss_dssp EEECTT-TTTTEEEEEEESCCCTTCGGGTTC-------------E------------EEEEECS--SSSSCS-SSHHHHH
T ss_pred eeecCC-CCCCCEEEEEcCCCCCCChhhccc-------------c------------ccccCCC--CCCCCC-CCcHHHH
Confidence 567755 999999999999999999999642 1 1222232 223377 9999999
Q ss_pred eeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCC-------CcEEEEcccCCCCC
Q 036374 173 ASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADG-------VDIILTGATYGFAF 245 (706)
Q Consensus 173 Agi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~g-------v~VIN~SlG~~~~~ 245 (706)
||||+|+. .||||+|+|+.+|+++....++.++++++++++++++ ++|||||||..
T Consensus 75 Agii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin~S~g~~--- 137 (279)
T 3f7m_A 75 AGTIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGG--- 137 (279)
T ss_dssp HHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE---
T ss_pred HHHHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeEEEeCCCcC---
Confidence 99999863 7999999999999998333488999999999999976 89999999976
Q ss_pred CChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCC-cccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCc
Q 036374 246 DFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPAS-TVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGN 324 (706)
Q Consensus 246 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~-~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 324 (706)
....+..++.++.++|++||+||||+|..... .+...+++|+|||++.+
T Consensus 138 --~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------------------------- 187 (279)
T 3f7m_A 138 --YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDSN---------------------------- 187 (279)
T ss_dssp --CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT----------------------------
T ss_pred --ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCCC----------------------------
Confidence 34678888889999999999999999876433 36678999999987643
Q ss_pred eeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhh
Q 036374 325 KFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMED 404 (706)
Q Consensus 325 ~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~ 404 (706)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 3f7m_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccc
Q 036374 405 FERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVK 484 (706)
Q Consensus 405 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~ 484 (706)
+.++.||++||.. ||+|||++|+++++ .+.
T Consensus 188 -----------------------------~~~~~~S~~g~~~--------di~ApG~~i~s~~~-------------~~~ 217 (279)
T 3f7m_A 188 -----------------------------DVRSTFSNYGRVV--------DIFAPGTSITSTWI-------------GGR 217 (279)
T ss_dssp -----------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECG-------------GGC
T ss_pred -----------------------------CCCCCCCCCCCCC--------eEEECCCCeEeecC-------------CCC
Confidence 4578899999966 99999999999987 356
Q ss_pred eeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccC
Q 036374 485 YNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMN 529 (706)
Q Consensus 485 y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~ 529 (706)
|..++|||||||+|||++|||+|++|. ++++||++|++||++..
T Consensus 218 ~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~ 261 (279)
T 3f7m_A 218 TNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNV 261 (279)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESC
T ss_pred EEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccc
Confidence 899999999999999999999999999 99999999999998743
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-45 Score=403.85 Aligned_cols=270 Identities=18% Similarity=0.159 Sum_probs=197.3
Q ss_pred ccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccc
Q 036374 93 TVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHM 172 (706)
Q Consensus 93 ~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThV 172 (706)
..|..+.+|+||+|+|||||||++||+|.+.- ...+.++..+. -+ ..| ..++.|. .||||||
T Consensus 17 ~aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~------------~~~~~~~v~~~--dg-~~f--~~~~~D~-~GHGThV 78 (546)
T 2qtw_B 17 DEYQPPDGGSLVEVYLLDTSIQSDHREIEGRV------------MVTDFENVPEE--DG-TRF--HRQASKC-DSHGTHL 78 (546)
T ss_dssp -------CCTTSEEEEEESCCCTTSTTTTTTE------------EEEEEECCCCC--C----------CTTT-THHHHHH
T ss_pred hhcccCCCCCCcEEEEECCCCCCCChHHcccc------------cccCcccccCC--CC-ccc--cCCCCCC-CChHHHH
Confidence 37888899999999999999999999997521 00011110000 00 001 1345677 9999999
Q ss_pred eeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC-CCHHHHHHHHHHHHH------CCCcEEEEcccCCCCC
Q 036374 173 ASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-CNEADILAAFDDAIA------DGVDIILTGATYGFAF 245 (706)
Q Consensus 173 Agi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~ai~------~gv~VIN~SlG~~~~~ 245 (706)
||||+|.. .||||+|+|+.+|+++ ..+ ++.+++++||+|+++ .+++|||||||+.
T Consensus 79 AGIIag~~--------------~GVAP~A~L~~vkVl~-~~G~g~~s~ii~ai~~a~~~~~~~~~g~~VINmSlGg~--- 140 (546)
T 2qtw_B 79 AGVVSGRD--------------AGVAKGASMRSLRVLN-CQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG--- 140 (546)
T ss_dssp HHHHHCTT--------------TCSSTTCEEEEEECSC-TTSEEEHHHHHHHHHHHHHHHHHSCCSCEEEEECEEEE---
T ss_pred HHHHhccC--------------CCcCCCCEEEEEEEEC-CCCCcCHHHHHHHHHHHHHhhhhccCCCeEEEecCCCC---
Confidence 99999873 7999999999999998 444 778899999999998 4999999999976
Q ss_pred CChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-CcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCc
Q 036374 246 DFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPA-STVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGN 324 (706)
Q Consensus 246 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~-~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 324 (706)
....+..++.++.++|++||+||||+|.+.. ..+...+++|+|||++.+...
T Consensus 141 --~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~------------------------- 193 (546)
T 2qtw_B 141 --YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP------------------------- 193 (546)
T ss_dssp --CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB-------------------------
T ss_pred --CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc-------------------------
Confidence 2357788888999999999999999997643 346678999999998754200
Q ss_pred eeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhh
Q 036374 325 KFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMED 404 (706)
Q Consensus 325 ~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~ 404 (706)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccc
Q 036374 405 FERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVK 484 (706)
Q Consensus 405 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~ 484 (706)
...-..||++||. |||+|||++|+++++.. ...
T Consensus 194 ----------------------------a~~s~~fSn~G~~--------vDI~APG~~I~St~~~~-----------~~~ 226 (546)
T 2qtw_B 194 ----------------------------VTLGTLGTNFGRC--------VDLFAPGEDIIGASSDC-----------STC 226 (546)
T ss_dssp ----------------------------CEETTEECCBSTT--------CCEEEECSSEEEECTTS-----------TTC
T ss_pred ----------------------------ccccCCcCCCCCc--------ceEEecCccEEeeccCC-----------CCc
Confidence 0001128999984 49999999999998743 246
Q ss_pred eeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCC----------C-------CCCCCCCCCCCC--C
Q 036374 485 YNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGT----------V-------NRGREFDYGSGH--I 545 (706)
Q Consensus 485 y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~----------~-------~~~~~~~~G~G~--i 545 (706)
|..++|||||||||||++|||+|++|+|+++|||++|++||.+..-. . .+.....+|+|+ .
T Consensus 227 y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~i~~~~~p~~~~~~tpN~l~~~~~~~~~~G~~l~~~ 306 (546)
T 2qtw_B 227 FVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVINEAWFPEDQRVLTPNLVAALPPSTHGAGWQLFCR 306 (546)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESCSCGGGSCHHHHTTSCCEECCCCCTTCC--CCCEEE
T ss_pred EeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccccCCccCccccCCCCccchhccCCcccccCCCcchh
Confidence 99999999999999999999999999999999999999999753210 0 111345677777 6
Q ss_pred CccccCC
Q 036374 546 DPVKATN 552 (706)
Q Consensus 546 d~~~Al~ 552 (706)
++..+..
T Consensus 307 ~~w~a~s 313 (546)
T 2qtw_B 307 TVWSAHS 313 (546)
T ss_dssp EEECCCC
T ss_pred chhccCC
Confidence 6666654
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-43 Score=402.88 Aligned_cols=292 Identities=20% Similarity=0.191 Sum_probs=196.4
Q ss_pred cCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCC
Q 036374 88 MGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLG 167 (706)
Q Consensus 88 ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~g 167 (706)
|++. .+|..+++|+||+|||||||||++||||.+. .+.+ .++|..+. .+..|.+..+|
T Consensus 57 inv~-~aw~~g~tG~GV~VaViDtGid~~HpDL~~n-------~~~~-----~~~~~~~~---------~dp~p~~~~~g 114 (600)
T 3hjr_A 57 LNLW-WAHRTGVLGQGVNVAVVDDGLAIAHPDLADN-------VRPG-----SKNVVTGS---------DDPTPTDPDTA 114 (600)
T ss_dssp CCCH-HHHHHTCSCTTCEEEEESSCCCTTCTTTGGG-------BCSC-----CBCTTTSS---------SCCCCCSTTCC
T ss_pred cCHH-HHHHcCCCCCCeEEEEEcCCCCCCChhHhhc-------cccC-----cceeecCC---------CCCCCCCCCCC
Confidence 5666 8999999999999999999999999999752 1111 11221111 01233333289
Q ss_pred CcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHH-HHHHHCCCcEEEEcccCCCCCC
Q 036374 168 HGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAF-DDAIADGVDIILTGATYGFAFD 246 (706)
Q Consensus 168 HGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai-~~ai~~gv~VIN~SlG~~~~~~ 246 (706)
|||||||||||.. ++. | +.||||+|+|+.+|++++...+..++++.++ +++..++++|||+|||......
T Consensus 115 HGThVAGiIAa~~-n~~---g-----~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~G~~~~~~ 185 (600)
T 3hjr_A 115 HGTSVSGIIAAVD-NAI---G-----TKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYGMSVVDP 185 (600)
T ss_dssp HHHHHHHHHHCCS-SSS---S-----CCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECCCCCCSSC
T ss_pred hHHHHHHHHhEeC-CCC---C-----cEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEecccCccccCC
Confidence 9999999999863 111 2 2899999999999999843446777877776 6788899999999999763222
Q ss_pred Chh-----hHHHHHHHHH--HhCCcEEEEecCCCCCCCCC----------------------cccCCCceEEEccccCCc
Q 036374 247 FAE-----DAVAIGAFHA--MEKGILTAVPTGNMGPKPAS----------------------TVVVAPWILTVAGSSIDR 297 (706)
Q Consensus 247 ~~~-----~~~~~a~~~a--~~~Gv~vV~AAGN~G~~~~~----------------------~~~~~p~vitVga~~~~~ 297 (706)
... ..+..++..+ ..+|+++|+||||.+..... .....+++|+|||.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~~~~~IsVgA~---- 261 (600)
T 3hjr_A 186 RSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGGYVLNRTGNGPKLPFENSNLDPSNSNFWNLVVSAL---- 261 (600)
T ss_dssp CCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETTEEEEEESSCCCCCSSBTTSSGGGGSSSEEEEEEE----
T ss_pred ccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccccccccCCCCCCCCcccccccCccccCcceEEeee----
Confidence 211 1222222222 25799999999997542100 00011222222222
Q ss_pred ceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecC
Q 036374 298 PFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVG 377 (706)
Q Consensus 298 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~G 377 (706)
T Consensus 262 -------------------------------------------------------------------------------- 261 (600)
T 3hjr_A 262 -------------------------------------------------------------------------------- 261 (600)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceE
Q 036374 378 ALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDIS 457 (706)
Q Consensus 378 a~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~ 457 (706)
...+.++.||++|+.. +++
T Consensus 262 -----------------------------------------------------~~~g~~a~yS~~G~~v--------~~~ 280 (600)
T 3hjr_A 262 -----------------------------------------------------NADGVRSSYSSVGSNI--------FLS 280 (600)
T ss_dssp -----------------------------------------------------CTTSSBCTTCCBCTTC--------CEE
T ss_pred -----------------------------------------------------cCCCCEeecccCCcce--------eec
Confidence 2336788999999988 899
Q ss_pred ecCCcE--------EecccCCCCC-------------CCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHH
Q 036374 458 APAVQI--------LAAYTGGWGP-------------SNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSS 516 (706)
Q Consensus 458 APG~~I--------~sa~~~~~~~-------------~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ 516 (706)
|||..+ ....+..... ...........|..++|||||||||||++|||+|+||+||++|
T Consensus 281 apg~~~~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~~~ 360 (600)
T 3hjr_A 281 ATGGEYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRD 360 (600)
T ss_dssp EECCSCSSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHHH
T ss_pred cCCCCCCCCCcceeeecCCCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCCCHHH
Confidence 999763 2222211000 0001112235688999999999999999999999999999999
Q ss_pred HHHHHHhcccccCCCCCC-------------------C---------CCCCCCCCCCCccccCCcCc
Q 036374 517 IKSALMTTALLMNGTVNR-------------------G---------REFDYGSGHIDPVKATNPGL 555 (706)
Q Consensus 517 ik~~L~~TA~~~~~~~~~-------------------~---------~~~~~G~G~id~~~Al~~~l 555 (706)
||++|++||++++....| . ....||+|+||+.+|++.+.
T Consensus 361 v~~~L~~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG~vDA~~aV~~A~ 427 (600)
T 3hjr_A 361 LRDLLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALELAA 427 (600)
T ss_dssp HHHHHHHHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHHHT
T ss_pred HHHHHHhhCccCCCCCCcccccccccccccccccccCCcccccCCceEccccCCceecHHHHHHHhh
Confidence 999999999987643211 0 23579999999999987543
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-25 Score=250.72 Aligned_cols=99 Identities=18% Similarity=0.227 Sum_probs=77.9
Q ss_pred ceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHH---CCCcEEEEcccCCCCC--CChhhHHHHHHHHHHhCCcEEE
Q 036374 193 NVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIA---DGVDIILTGATYGFAF--DFAEDAVAIGAFHAMEKGILTA 267 (706)
Q Consensus 193 ~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~---~gv~VIN~SlG~~~~~--~~~~~~~~~a~~~a~~~Gv~vV 267 (706)
.+.||||+|+|+.|++.+ ..++++++|++|++ ++++|||||||..... ......+..++.+|..+||+||
T Consensus 273 ~~~gvAp~a~i~~~~~~~-----~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi~vv 347 (552)
T 1t1e_A 273 VAGALAPGAKIAVYFAPN-----TDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVL 347 (552)
T ss_dssp HHHHHCTTSEEEEEECCS-----SHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hhhccCCCCeEEEEEcCC-----CCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCeEEE
Confidence 348999999999999754 46789999999998 7999999999987211 0112356667777888999999
Q ss_pred EecCCCCCCC--------CCcccCCCceEEEccccCC
Q 036374 268 VPTGNMGPKP--------ASTVVVAPWILTVAGSSID 296 (706)
Q Consensus 268 ~AAGN~G~~~--------~~~~~~~p~vitVga~~~~ 296 (706)
+||||+|... ...++.+|+|++||+++..
T Consensus 348 ~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~~ 384 (552)
T 1t1e_A 348 AAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLV 384 (552)
T ss_dssp EECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEE
T ss_pred EecCCCCCCCCCCCCcccccCcccCCCEEEEeccccc
Confidence 9999999643 2345688999999998753
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.5e-22 Score=211.51 Aligned_cols=101 Identities=17% Similarity=0.155 Sum_probs=80.2
Q ss_pred eeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHH-CCCcEEEEcccCCCCC---CChhhHHHHHHHHHHhCCcEEEEec
Q 036374 195 RGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIA-DGVDIILTGATYGFAF---DFAEDAVAIGAFHAMEKGILTAVPT 270 (706)
Q Consensus 195 ~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~-~gv~VIN~SlG~~~~~---~~~~~~~~~a~~~a~~~Gv~vV~AA 270 (706)
..+||+++++.|++.+ ...++.++++++|++|++ ++++|||||||..... ......+..++.+|..+||+||+||
T Consensus 90 g~~aP~a~~~~~~~~~-~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~As 168 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMAD-QSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSS 168 (372)
T ss_dssp HHTTSCEEEEEEEEEC-TTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hhcCCCCcEEEEEeCC-CCCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEE
Confidence 4579999999999987 545678899999999998 8999999999986210 1223456677777888999999999
Q ss_pred CCCCCCCC-------------CcccCCCceEEEccccCC
Q 036374 271 GNMGPKPA-------------STVVVAPWILTVAGSSID 296 (706)
Q Consensus 271 GN~G~~~~-------------~~~~~~p~vitVga~~~~ 296 (706)
||+|...+ ..++.+|++++||+++..
T Consensus 169 Gd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~ 207 (372)
T 1ga6_A 169 GDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 207 (372)
T ss_dssp CSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred CCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence 99997532 345678999999998754
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.97 E-value=4e-10 Score=99.89 Aligned_cols=76 Identities=5% Similarity=0.025 Sum_probs=63.7
Q ss_pred eEEEEEecCCCCCCCCchhHHHHHHHhccCcccCCccEEEEecceeeEEEEEcCHHHHHHHhcCCCeeEEEccccccc
Q 036374 2 QVCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQNRISRMDGIVSVFPSKTLQL 79 (706)
Q Consensus 2 ~~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~~~V~~v~~~~~~~~ 79 (706)
+.|||+|++... ......|++|+.+.+.+ .....+|.|+|++.|+||+++|+++++++|+++|+|.+|++++.++.
T Consensus 38 ~~YIV~lk~~~~-~~~~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v~~ 113 (114)
T 2w2n_P 38 GTYVVVLKEETH-LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 113 (114)
T ss_dssp EEEEEEECTTCC-HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred CcEEEEECCCCC-HHHHHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceEec
Confidence 589999998654 23456788888776655 34567999999999999999999999999999999999999998764
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=5.1e-09 Score=117.31 Aligned_cols=100 Identities=13% Similarity=0.056 Sum_probs=62.6
Q ss_pred eeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHH--HCCCcEEEEcccCCCCC--CChhhHHHHHHHHHHhCCcEEEEec
Q 036374 195 RGAVPSARIAAYRVCHYPWPCNEADILAAFDDAI--ADGVDIILTGATYGFAF--DFAEDAVAIGAFHAMEKGILTAVPT 270 (706)
Q Consensus 195 ~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai--~~gv~VIN~SlG~~~~~--~~~~~~~~~a~~~a~~~Gv~vV~AA 270 (706)
.+++++..++.|.... . ....+.++..+++.. .+-++||++|||..... ..+...+...+..+..+||.|++|+
T Consensus 262 ~a~~~~i~~~~~~~~g-~-~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~AS 339 (544)
T 3edy_A 262 MSAGANISTWVYSSPG-R-HEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFAS 339 (544)
T ss_dssp HHHSTTSEEEEECCCS-C-CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hccCCCceEEEEecCC-c-ccccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 3455556655553322 1 112234454444433 24679999999987211 1122345555667778999999999
Q ss_pred CCCCCCC----------CCcccCCCceEEEccccCC
Q 036374 271 GNMGPKP----------ASTVVVAPWILTVAGSSID 296 (706)
Q Consensus 271 GN~G~~~----------~~~~~~~p~vitVga~~~~ 296 (706)
||+|... ...++.+|||++||+++..
T Consensus 340 GD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l~ 375 (544)
T 3edy_A 340 GDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSFQ 375 (544)
T ss_dssp CSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEES
T ss_pred CCCCccccCCCCCccccCCCcCCCCcEEEEeeeecc
Confidence 9999643 1345688999999998753
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.87 E-value=7.6e-09 Score=85.70 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=57.0
Q ss_pred eEEEEEecCCCCCCCCchhHHHHHHHhccCcccCCccEEEEecceeeEEEEEcCHHHHHHHhcCCCeeEEEccccccccc
Q 036374 2 QVCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQNRISRMDGIVSVFPSKTLQLQT 81 (706)
Q Consensus 2 ~~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~~~V~~v~~~~~~~~~~ 81 (706)
..|||.|++... ....++.+.+. .+.++.|+|++ |+||+++++++++++|+++|+|.+|++++.+++++
T Consensus 9 ~~YIV~~k~~~~----~~~~~~~~~~~------~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~~~t 77 (80)
T 3cnq_P 9 KKYIVGFKQGFK----SCAKKEDVISE------KGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRALS 77 (80)
T ss_dssp CEEEEEECTTCC----SHHHHHHHHHT------TTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEEECC
T ss_pred CCEEEEECCCCC----hHHHHHHHHHH------cCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEEEee
Confidence 589999998765 22233333332 34689999998 99999999999999999999999999999998876
Q ss_pred cC
Q 036374 82 TR 83 (706)
Q Consensus 82 ~~ 83 (706)
+.
T Consensus 78 t~ 79 (80)
T 3cnq_P 78 AT 79 (80)
T ss_dssp C-
T ss_pred ec
Confidence 54
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.55 E-value=5.7e-08 Score=87.03 Aligned_cols=76 Identities=5% Similarity=0.017 Sum_probs=57.5
Q ss_pred eEEEEEecCCCCCCCCchhHHHHHHHhccCcccCCccEEEEecceeeEEEEEcCHHHHHHHhcCCCeeEEEccccccc
Q 036374 2 QVCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQNRISRMDGIVSVFPSKTLQL 79 (706)
Q Consensus 2 ~~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~~~V~~v~~~~~~~~ 79 (706)
..|||.|++... ......|.+++.+.+. +...+.++.|+|++.||||+++++++++++|+++|+|.+|++++.++.
T Consensus 48 ~~YIV~~K~~~~-~~~~~~~~~~l~~~~~-~r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~a 123 (124)
T 2qtw_A 48 GTYVVVLKEETH-LSQSERTARRLQAQAA-RRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 123 (124)
T ss_dssp EEEEEEECTTCC-HHHHHHHHHHHHHHHH-HTTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred CCEEEEECCCCC-HHHHHHHHHHHHHHHh-hcccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEec
Confidence 479999998765 2223344444433221 122456899999999999999999999999999999999999988753
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.48 E-value=2e-07 Score=76.08 Aligned_cols=71 Identities=18% Similarity=0.208 Sum_probs=54.5
Q ss_pred CeEEEEEecCCCCCCCCchhHHHHHHHhccCcccCCccEEEEec-ceeeEEEEEcCHHHHHHHhcC--CCeeEEEccccc
Q 036374 1 MQVCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYE-RSFNGFAAKLTDEEQNRISRM--DGIVSVFPSKTL 77 (706)
Q Consensus 1 ~~~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~-~~~ng~s~~~~~~~~~~L~~~--~~V~~v~~~~~~ 77 (706)
+..|||.|++... ......|.+++. .. +.+|.|.|+ .+|+||+++++++++++|+++ |.|.+||+++.+
T Consensus 2 ~~sYIV~lk~~~~-~~~~~~~~~~~~-~~------gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v 73 (76)
T 1v5i_B 2 AGKFIVIFKNDVS-EDKIRETKDEVI-AE------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVA 73 (76)
T ss_dssp CEEEEEEECTTCC-HHHHHHHHHHHH-HH------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEE
T ss_pred CceEEEEECCCCC-HHHHHHHHHHHH-hh------CCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEE
Confidence 4689999998655 222333444432 22 347899994 899999999999999999999 889999999876
Q ss_pred cc
Q 036374 78 QL 79 (706)
Q Consensus 78 ~~ 79 (706)
..
T Consensus 74 ~~ 75 (76)
T 1v5i_B 74 HA 75 (76)
T ss_dssp EC
T ss_pred eC
Confidence 53
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00046 Score=66.22 Aligned_cols=80 Identities=13% Similarity=0.031 Sum_probs=63.9
Q ss_pred cccccCCCCCCCC-------cccccEEEEeec------ccchheeecCceEEEecC-C-CC-----C--CCCcCccEEEe
Q 036374 343 ASRQCSLFCLDEN-------LVKGKILLCDNF------RGDVETFRVGALGSIQPA-S-TI-----M--SHPTPFPTVIL 400 (706)
Q Consensus 343 ~~~~c~~~~~~~~-------~~~gkivl~~~~------~k~~~~~~~Ga~g~i~~~-~-~~-----~--~~~~~~p~~~i 400 (706)
....|.+...... ..++||+|++|. +|..+++++||.++|||| . .+ + .....+|+++|
T Consensus 82 ~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~I 161 (194)
T 3icu_A 82 ALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMI 161 (194)
T ss_dssp CTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEE
T ss_pred CcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEE
Confidence 4578987654322 257999999994 589999999999999999 3 21 1 12357999999
Q ss_pred chhhHHHHHHHHhcCCCcEEEE
Q 036374 401 KMEDFERVKLYINSTEKPQVHI 422 (706)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~~i 422 (706)
+..+|+.|++.+..+...+++|
T Consensus 162 s~~~G~~L~~~L~~G~~Vtvti 183 (194)
T 3icu_A 162 GNLKGTKILQSIQRGIQVTMVI 183 (194)
T ss_dssp CHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHHHHCCCeEEEEE
Confidence 9999999999999998888888
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00029 Score=55.28 Aligned_cols=63 Identities=10% Similarity=0.075 Sum_probs=50.6
Q ss_pred CeEEEEEecCCCCCCCCchhHHHHHHHhccCcccCCccEEEEecceeeEEEEEcCHHHHHHHhcCCCeeEEEcccccc
Q 036374 1 MQVCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQNRISRMDGIVSVFPSKTLQ 78 (706)
Q Consensus 1 ~~~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~~~V~~v~~~~~~~ 78 (706)
+-+|||.+++... .. + .....+.+|.++| ..+++++++||.+.+++|+++|+|.+|++|...+
T Consensus 1 ~~~~IV~f~~~~~----~~-------~---~i~~~gG~i~~~~-~~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 1 TIRVIVSVDKAKF----NP-------H---EVLGIGGHIVYQF-KLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp CEEEEEEECGGGC----CG-------G---GGGGGTCEEEEEC-SSSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred CeeEEEEEcCcch----hH-------H---HHHHCCCEEEEEe-cCCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 4589999987521 11 1 1234667999999 8999999999999999999999999999998764
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.054 Score=47.86 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=54.1
Q ss_pred eEEEEEEEEeccCCCeeEEEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEEEecccCCCceEEEEEEEE-cCCceEEe
Q 036374 615 SIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDGAILQANHTVSASLLWS-DGTHNVRS 693 (706)
Q Consensus 615 ~~~~~rtv~n~g~~~~ty~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~-~~~~~v~~ 693 (706)
..+.+.+++|+|..+..|+... +. -++++|+..++ ++|+++.++|+|.+.. ...+.+.|.+. ++...+.+
T Consensus 42 ~~~~~~~l~N~g~~~~~f~~~~---~~--~F~i~P~~g~L-~pg~~~~i~V~F~P~~---~g~~~~~l~v~~~~g~~~~v 112 (122)
T 2ys4_A 42 STQKILLVRNIGNKNAVFHIKT---CR--PFSIEPAIGTL-NVGESMQLEVEFEPQS---VGDHSGRLIVCYDTGEKVFV 112 (122)
T ss_dssp CEEEEEEEECCSSSCEEEEEEC---CT--TEEEESSEEEE-CTTCEEEEEEEECCSS---SBCCCCBCEEEESSSCEECC
T ss_pred eEEEEEEEEECCCCCEEEEEec---CC--CeEEECCcCEE-CCCCEEEEEEEEEcCC---CccEEEEEEEEECCCCEEEE
Confidence 6788889999999888887654 33 36678999999 8999999999999875 33466666654 55555555
Q ss_pred eE
Q 036374 694 PI 695 (706)
Q Consensus 694 P~ 695 (706)
++
T Consensus 113 ~L 114 (122)
T 2ys4_A 113 SL 114 (122)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=89.77 E-value=0.52 Score=51.31 Aligned_cols=69 Identities=19% Similarity=0.251 Sum_probs=52.8
Q ss_pred CCcccccEEEEeeccc------------------chheeecCceEEEecC-CCC---------C--C-CCcCccEEEech
Q 036374 354 ENLVKGKILLCDNFRG------------------DVETFRVGALGSIQPA-STI---------M--S-HPTPFPTVILKM 402 (706)
Q Consensus 354 ~~~~~gkivl~~~~~k------------------~~~~~~~Ga~g~i~~~-~~~---------~--~-~~~~~p~~~i~~ 402 (706)
..+++|||||+.+... ..++.++||.|+|+++ ... + . ....+|++.|+.
T Consensus 124 ~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~ 203 (444)
T 3iib_A 124 AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISN 203 (444)
T ss_dssp TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECH
T ss_pred ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecH
Confidence 4689999999987321 2358899999999998 211 1 1 234689999999
Q ss_pred hhHHHHHHHHhcCCCcEEEE
Q 036374 403 EDFERVKLYINSTEKPQVHI 422 (706)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~i 422 (706)
++++.|...+..+...++++
T Consensus 204 ~da~~L~~~l~~g~~~~v~l 223 (444)
T 3iib_A 204 PDADLINAMLKRDKEVVISL 223 (444)
T ss_dssp HHHHHHHHHHTTTCCCEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEE
Confidence 99999999998876666666
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=89.63 E-value=1.3 Score=38.54 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=45.1
Q ss_pred eEEEEEEEEeccCCCeeEEEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEEEecc
Q 036374 615 SIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDGAI 671 (706)
Q Consensus 615 ~~~~~rtv~n~g~~~~ty~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 671 (706)
.-.++..+.|....+++|++++.. .+|+++. .|..+++ ++|+..++.|.|..+.
T Consensus 32 ~N~Ytlki~Nkt~~~~~~~l~v~g-~~~l~~~-g~~~i~v-~~g~~~~~~v~v~~~~ 85 (118)
T 2r39_A 32 ENTYTLKVINKTQQVQEYNLDVKG-LNDVSWY-GKQTIQV-EPGEVLNLPMSLGADP 85 (118)
T ss_dssp EEEEEEEEEECSSSCEEEEEEEES-CSSCEEE-SCCEEEE-CTTCEEEEEEEEEECG
T ss_pred EEEEEEEEEECCCCCEEEEEEEeC-CcccEEe-CCCcEEE-CCCCEEEEEEEEEECh
Confidence 456888899999999999999998 6777763 3567888 8999999999998865
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=88.83 E-value=0.65 Score=50.14 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=49.1
Q ss_pred CCcccccEEEEee-----cccchheeecCceEEEecC-CCC-----C--CCCcCccEEEechhhHHHHHHHHh
Q 036374 354 ENLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI-----M--SHPTPFPTVILKMEDFERVKLYIN 413 (706)
Q Consensus 354 ~~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~-----~--~~~~~~p~~~i~~~~~~~l~~~~~ 413 (706)
..+++|||+|+.+ ..|..+++++||.|+|+++ ... . .....+|.+.++.++++.|...+.
T Consensus 110 ~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 110 GKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp TSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred CCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 3479999999997 4688999999999999999 221 1 134568999999999999999984
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=88.26 E-value=0.21 Score=60.79 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=22.9
Q ss_pred CCCCCCcEEEEEccccCCCCcCCC
Q 036374 98 PTVESDMIIGVLDNGIWPESDMFD 121 (706)
Q Consensus 98 ~~~G~GVvVgVIDtGid~~Hp~f~ 121 (706)
.+.|+||+|||+|||||+.+|-|.
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCccEEEEEeCCCCCCCCcce
Confidence 689999999999999999999996
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.13 E-value=0.98 Score=38.66 Aligned_cols=82 Identities=9% Similarity=0.118 Sum_probs=55.9
Q ss_pred CCCCeEEEEeecCCCceEEEEEEEEeccCCCeeEEEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEEEecccCCCceE
Q 036374 599 LNLPSIAAQVEVHNPFSIKFLRTVTNVGLANTTYKAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDGAILQANHTV 678 (706)
Q Consensus 599 lN~psi~~~~~~~~~~~~~~~rtv~n~g~~~~ty~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~ 678 (706)
++...+-++...-+ ...+.+.+++|.|+.+..|+......+.+..++++|..-.+ ++|++++++|++.+.. .+ .+
T Consensus 12 ~~~~~ldFG~v~~g-~~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~~--~g-~f 86 (112)
T 2e6j_A 12 FNFELLDIGKVFTG-SAHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSSII--LG-NF 86 (112)
T ss_dssp ESCSEEEEEEEESS-CCEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCCC--CE-EE
T ss_pred ECcccEecEeEEEC-CEEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEECCC--cc-eE
Confidence 34445555555321 36777889999999999999843211224457778999988 8999999999999864 23 34
Q ss_pred EEEEEEE
Q 036374 679 SASLLWS 685 (706)
Q Consensus 679 ~G~i~~~ 685 (706)
.-.|++.
T Consensus 87 ~~~i~v~ 93 (112)
T 2e6j_A 87 EEEFLVN 93 (112)
T ss_dssp EEEECEE
T ss_pred EEEEEEE
Confidence 4556664
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.25 E-value=13 Score=33.17 Aligned_cols=83 Identities=12% Similarity=-0.025 Sum_probs=59.8
Q ss_pred eEEEEEEEEeccCCCeeEEEEEeec-----CcceEEEEEcCeEEEeeCCcEEEEEEEEEeccc------CCCceEEEEEE
Q 036374 615 SIKFLRTVTNVGLANTTYKAEVKTT-----SIDVKINVTPDALSFESVNDKKSFVVTVDGAIL------QANHTVSASLL 683 (706)
Q Consensus 615 ~~~~~rtv~n~g~~~~ty~~~~~~~-----~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~------~~~~~~~G~i~ 683 (706)
..+.+.+++|.|.-+.+|+...... ++- ++++|..-++ .+|++..++|++.++.. ....-++.-|+
T Consensus 44 ~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~w--l~v~P~~G~L-~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLv 120 (140)
T 3qbt_B 44 LQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPW--LRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDILV 120 (140)
T ss_dssp CEEEEEEEEECSSSCEEEEEECCTTCSSSSCTT--EEEESCEEEE-CTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEE
T ss_pred eeeeEEEEEcCCccceEEEEecCCCchhhhhHh--hhcCCccccc-CCCCeeEEEEEEEEccCcccccccchhhhheeEE
Confidence 4667778999999999999975321 223 5557999999 89999999999987541 11133556677
Q ss_pred EE-cCCceEEeeEEEEEe
Q 036374 684 WS-DGTHNVRSPIVVYTN 700 (706)
Q Consensus 684 ~~-~~~~~v~~P~~~~~~ 700 (706)
+. .++....+|+...+.
T Consensus 121 L~Ve~G~d~fI~v~g~~~ 138 (140)
T 3qbt_B 121 LHLDRGKDYFLTISGNYL 138 (140)
T ss_dssp EEETTSCEEEEEEEEEEC
T ss_pred EEeecCCcEEEEEecccc
Confidence 75 566778999887654
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=81.57 E-value=1 Score=51.17 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=46.7
Q ss_pred CcccccEEEEee-----cccchheeecCceEEEecC-CCC--C---------------CC--------------------
Q 036374 355 NLVKGKILLCDN-----FRGDVETFRVGALGSIQPA-STI--M---------------SH-------------------- 391 (706)
Q Consensus 355 ~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~-~~~--~---------------~~-------------------- 391 (706)
.+++|||+|+.+ ..|..+++++||.|+|+|+ ..+ . .+
T Consensus 128 vdv~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~~~ 207 (640)
T 3kas_A 128 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSS 207 (640)
T ss_dssp SCCTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCSSC
T ss_pred cccCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCccccccccccccccc
Confidence 479999999998 4688999999999999998 211 0 00
Q ss_pred -CcCccEEEechhhHHHHHHHHh
Q 036374 392 -PTPFPTVILKMEDFERVKLYIN 413 (706)
Q Consensus 392 -~~~~p~~~i~~~~~~~l~~~~~ 413 (706)
...+|+..|+.++++.|+..+.
T Consensus 208 ~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 208 GLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CCCSSCEEECCHHHHHHHHTTEE
T ss_pred CCCCCCEEecCHHHHHHHHHHcc
Confidence 1257999999999999988664
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=81.15 E-value=1 Score=49.01 Aligned_cols=30 Identities=27% Similarity=0.217 Sum_probs=26.0
Q ss_pred CCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccC
Q 036374 432 AAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTG 469 (706)
Q Consensus 432 ~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~ 469 (706)
..+.++.||++||.. ||+|||++|+++++.
T Consensus 182 ~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~ 211 (441)
T 1y9z_A 182 SNLDHAAFSQYTDQV--------EISGPGEAILSTVTV 211 (441)
T ss_dssp TTCCBCTTSCCCTTE--------EEEEECSSEEEECST
T ss_pred CCCCCCccccCCCce--------EEEeccCCeeccccC
Confidence 346799999999866 999999999999873
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 706 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 1e-31 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 5e-15 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 5e-05 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 8e-13 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 0.003 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 2e-12 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 1e-11 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 0.002 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 3e-10 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 2e-09 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 9e-09 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 1e-07 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 2e-07 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 2e-06 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 3e-06 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 7e-06 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 125 bits (315), Expect = 1e-31
Identities = 71/456 (15%), Positives = 140/456 (30%), Gaps = 60/456 (13%)
Query: 102 SDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTT 161
+ I ++D+G + + + G N + +
Sbjct: 22 GNRTICIIDSGYDRSHNDLNANNVT-------------GTNNSGTGNWYQPGNNNA---- 64
Query: 162 REYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADIL 221
HGTH+A A G+ +A I +V + + ++
Sbjct: 65 ------HGTHVAGTIAAI-ANNEGVVGVMPN------QNANIHIVKVFNEAGWGYSSSLV 111
Query: 222 AAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTV 281
AA D + G ++T + G E G+L GN G S
Sbjct: 112 AAIDTCVNSGGANVVTMSLGGSGSTTTERNAL---NTHYNNGVLLIAAAGNAGDSSYSYP 168
Query: 282 VVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSE 341
+++VA + F+ ++ +S +
Sbjct: 169 ASYDSVMSVAAVDSN-----------------LDHAAFSQYTDQVEISGPGEAILSTVTV 211
Query: 342 LASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILK 401
R + ++ ++ + ++ + + +
Sbjct: 212 GEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGN 271
Query: 402 MEDFERVKLYINSTEKPQVHILRSMAIKD-DAAPVVHPFSGRGPSKITPDII--KPDISA 458
M + + + + I + A K A ++ + P P ++ DI+
Sbjct: 272 MANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITV 331
Query: 459 PAVQILAAYT----GGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSP 514
P+V + A G S + Y +GTS+A+ +G A V S+HP+ S
Sbjct: 332 PSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSA 391
Query: 515 SSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKA 550
S +++AL TA ++ GR+ G G I+ V A
Sbjct: 392 SQVRAALNATADDLSVA---GRDNQTGYGMINAVAA 424
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 76.2 bits (186), Expect = 5e-15
Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 8/110 (7%)
Query: 454 PDISAPAVQILAAYTGGWGPSNHPMDHRFV-----KYNILSGTSIASAFAAGAAAYVRSF 508
+ AP V IL+ G + Y+ GTS+A+ G A +
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 509 HPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATNPGLVYE 558
P+ P I+ L TA NG G + D G G + A L +
Sbjct: 398 FPNAKPWQIRKLLENTAFDFNGN---GWDHDTGYGLVKLDAALQGPLPTQ 444
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 44.3 bits (103), Expect = 5e-05
Identities = 35/264 (13%), Positives = 75/264 (28%), Gaps = 42/264 (15%)
Query: 86 DFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTC 145
+ +G + + E + +++I+ V+D G+ + G G
Sbjct: 139 EAIGVTQQLWEEAS-GTNIIVAVVDTGVDGTHPDLE-------------GQVIAGYRPAF 184
Query: 146 NNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAA 205
+ ++ S GTH+A A + G P A+I
Sbjct: 185 DEELPAGTDSSYGG-------SAGTHVAGTIAAK---------KDGKGIVGVAPGAKIMP 228
Query: 206 YRVCHYPWPCN------EADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHA 259
+ P + + A A G ++ + G+ + + A
Sbjct: 229 IVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVM-NHSWGGWGYSYTMKEAFDYAMEH 287
Query: 260 MEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAI---LGDGTTLVGDAV 316
+++A + P ++ VA A DG ++ V
Sbjct: 288 GVVMVVSAGNNTSDSHH--QYPAGYPGVIQVAALDYYGGTFRVAGFSSRSDGVSVGAPGV 345
Query: 317 NPFTMKGNKFPLSYGKTNASYPCS 340
+ + + Y N + P +
Sbjct: 346 TILSTVPGEDSIGYEGHNENVPAT 369
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 66.9 bits (162), Expect = 8e-13
Identities = 38/140 (27%), Positives = 56/140 (40%), Gaps = 19/140 (13%)
Query: 411 YINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGG 470
NS + + A D V S + + + ++ AP G
Sbjct: 152 AGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAELEVMAP---------GA 202
Query: 471 WGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNG 530
S +P + Y L+GTS+AS AGAAA + S HP+ S S +++ L +TA
Sbjct: 203 GVYSTYPTN----TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA----- 253
Query: 531 TVNRGREFDYGSGHIDPVKA 550
G F YG G I+ A
Sbjct: 254 -TYLGSSFYYGKGLINVEAA 272
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 38.0 bits (87), Expect = 0.003
Identities = 37/284 (13%), Positives = 82/284 (28%), Gaps = 46/284 (16%)
Query: 102 SDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTT 161
+++ + VLD GI + GG +F G +
Sbjct: 24 ANVKVAVLDTGIQASHPDLNV---------------VGGASFVAGEAYNTDGNGHGTHVA 68
Query: 162 REYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADIL 221
T V G PS + A +V + + + I+
Sbjct: 69 GTVAALDNTTG---------------------VLGVAPSVSLYAVKVLNSSGSGSYSGIV 107
Query: 222 AAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTV 281
+ + A +G+D+I A+ +A +G++ GN G ++
Sbjct: 108 SGIEWATTNGMDVI----NMSLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNT 163
Query: 282 VVAPW----ILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASY 337
+ P ++ V + + +G ++ ++ + T+ +
Sbjct: 164 IGYPAKYDSVIAVGAVDSNSNRASFSSVGAELEVMAPGAGVYSTYPTNTYATLNGTSMAS 223
Query: 338 P--CSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGAL 379
P A L + V+ ++ + G + G +
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSSFYYGKGLI 267
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 65.7 bits (159), Expect = 2e-12
Identities = 34/114 (29%), Positives = 45/114 (39%), Gaps = 27/114 (23%)
Query: 438 PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAF 497
FS G DI AP V + Y L+GTS+A+
Sbjct: 182 SFSQYGAG--------LDIVAPGVN-------------VQSTYPGSTYASLNGTSMATPH 220
Query: 498 AAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKAT 551
AGAAA V+ +P WS I++ L TA + G YGSG ++ AT
Sbjct: 221 VAGAAALVKQKNPSWSNVQIRNHLKNTA------TSLGSTNLYGSGLVNAEAAT 268
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 63.8 bits (154), Expect = 1e-11
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 19/98 (19%)
Query: 453 KPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDW 512
+ D+ AP V I + G KY +GTS+AS AGAAA + S HP+W
Sbjct: 195 ELDVMAPGVSIQSTLPGN-------------KYGAYNGTSMASPHVAGAAALILSKHPNW 241
Query: 513 SPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKA 550
+ + ++S+L T G F YG G I+ A
Sbjct: 242 TNTQVRSSLENTT------TKLGDSFYYGKGLINVQAA 273
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 38.0 bits (87), Expect = 0.002
Identities = 37/248 (14%), Positives = 67/248 (27%), Gaps = 38/248 (15%)
Query: 102 SDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTT 161
S++ + V+D+GI GG + +
Sbjct: 24 SNVKVAVIDSGIDSSHPDLKV---------------AGGASMVPSE-----------TNP 57
Query: 162 REYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADIL 221
+ HGTH V G V G PSA + A +V + I+
Sbjct: 58 FQDNNSHGTH---------VAGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYSWII 108
Query: 222 AAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTV 281
+ AIA+ +D+I + AV + +
Sbjct: 109 NGIEWAIANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYP 168
Query: 282 VVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSE 341
P ++ V + +G ++ V+ + YG N + S
Sbjct: 169 GKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPGN---KYGAYNGTSMASP 225
Query: 342 LASRQCSL 349
+ +L
Sbjct: 226 HVAGAAAL 233
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 59.9 bits (143), Expect = 3e-10
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 11/121 (9%)
Query: 437 HPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNILSGTSIASA 496
FS RGP+ IKPD+ AP IL+A + S+ +H KY + GTS+A+
Sbjct: 203 AQFSSRGPT--KDGRIKPDVMAPGTFILSARSSLAPDSSFWANHDS-KYAYMGGTSMATP 259
Query: 497 FAAGAAAYVRSFHPD-----WSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKAT 551
AG A +R PS +K+AL+ A + + G G + K+
Sbjct: 260 IVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLG---YPNGNQGWGRVTLDKSL 316
Query: 552 N 552
N
Sbjct: 317 N 317
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 56.8 bits (135), Expect = 2e-09
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 474 SNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVN 533
S+ YN +SGTS+A+ +G AA + + +P S + ++S L A ++
Sbjct: 232 SSVYSTWYNGGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGG 291
Query: 534 ----RGREFDYGSGHID 546
G ++ G G
Sbjct: 292 YGAAIGDDYASGFGFAR 308
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 55.2 bits (131), Expect = 9e-09
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 8/88 (9%)
Query: 471 WGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNG 530
D R +GTS ++ AAG A + + + ++ ++ T+ +
Sbjct: 239 NEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHL 298
Query: 531 T--------VNRGREFDYGSGHIDPVKA 550
V R YG G +D
Sbjct: 299 NADDWATNGVGRKVSHSYGYGLLDAGAM 326
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.7 bits (122), Expect = 1e-07
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 9/102 (8%)
Query: 466 AYTGGWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTA 525
Y+ G G H D N GTS A+ AAG + +P+ + ++ + +A
Sbjct: 238 TYSSGSGEYIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSA 297
Query: 526 LLMNGT---------VNRGREFDYGSGHIDPVKATNPGLVYE 558
+ + + + YG G ID K +E
Sbjct: 298 VGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMSKTWE 339
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 51.1 bits (121), Expect = 2e-07
Identities = 43/238 (18%), Positives = 64/238 (26%), Gaps = 37/238 (15%)
Query: 102 SDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTT 161
S I V+D G+ D K+I + +
Sbjct: 31 SGQEIAVIDTGVDYTHPDLD-------------------------GKVIKGYDFVDNDYD 65
Query: 162 REYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADIL 221
HGTH+A IAA G+A RI A R +DI
Sbjct: 66 PMDLNNHGTHVAGIAAAETNNATGIAGMAPN--------TRILAVRALDRNGSGTLSDIA 117
Query: 222 AAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTV 281
A A G ++I E+AV +A KG + GN G
Sbjct: 118 DAIIYAADSGAEVINLSLGCDCHTTTLENAV----NYAWNKGSVVVAAAGNNGSSTTFEP 173
Query: 282 VVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPC 339
++ V + G +V V+ + T+ + P
Sbjct: 174 ASYENVIAVGAVDQYDRLASFSNYGTWVDVVAPGVDIVSTITGNRYAYMSGTSMASPH 231
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 47.6 bits (112), Expect = 2e-06
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 473 PSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTV 532
+ +Y +SGTS+AS AG AA + S + I+ A+ TA ++GT
Sbjct: 207 GVDIVSTITGNRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGTG 264
Query: 533 NRGREFDYGSGHIDPVKATN 552
+ G I+ A
Sbjct: 265 T-----YFKYGRINSYNAVT 279
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 47.0 bits (110), Expect = 3e-06
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 475 NHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNR 534
+ + Y LSGTS+A+ AG A + S S S+I++A+ TA ++GT
Sbjct: 208 SIYSTYPTSTYASLSGTSMATPHVAGVAGLLAS--QGRSASNIRAAIENTADKISGTGTY 265
Query: 535 GREFDYGSGHIDPVKA 550
+ G ++ KA
Sbjct: 266 -----WAKGRVNAYKA 276
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 45.9 bits (107), Expect = 7e-06
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 8/69 (11%)
Query: 475 NHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNR 534
+ +SGTS+A+ AG AAY+ + + S+ + + TA N+
Sbjct: 207 DILSTWIGGSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTA-------NK 258
Query: 535 GREFDYGSG 543
G + G
Sbjct: 259 GDLSNIPFG 267
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 706 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.96 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.95 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.71 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.33 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 95.86 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 89.96 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=1.8e-52 Score=483.68 Aligned_cols=360 Identities=20% Similarity=0.206 Sum_probs=262.8
Q ss_pred EEEEEecCCCCCCCCchhHHHHHHHhccCcccCCccEEEEecceeeEEEEEcCHHHH----HH--HhcCCCeeEEEcccc
Q 036374 3 VCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQ----NR--ISRMDGIVSVFPSKT 76 (706)
Q Consensus 3 ~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~----~~--L~~~~~V~~v~~~~~ 76 (706)
+|||.+++... .+.+++.+. .++++.+ ..++.+.++++...+ +. +..+|+|++|+|+..
T Consensus 33 ~~iV~~k~~~~--------~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~vep~~~ 97 (671)
T d1r6va_ 33 KILVGYNDRSE--------VDKIVKAVN------GKVVLEL-PQIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYK 97 (671)
T ss_dssp EEEEEESSHHH--------HHHHHHHHT------CEEEEEE-GGGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBC
T ss_pred eEEEEECCccC--------HHHHHHhcC------CEEEEEe-cccceEEEEcCchhHHHHHHHHHHhcCCCceEECccee
Confidence 68888875322 233333333 4667777 566777787764322 22 235799999999865
Q ss_pred cccccc------------------------------CCc--cccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCC
Q 036374 77 LQLQTT------------------------------RSW--DFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKS 124 (706)
Q Consensus 77 ~~~~~~------------------------------~s~--~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~ 124 (706)
.++... ..| +.|+++ ++|....+|+||+|||||||||++||+|.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~-~a~~~~~tG~gV~VaViDtGvd~~Hpdl~~~- 175 (671)
T d1r6va_ 98 RELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVT-QQLWEEASGTNIIVAVVDTGVDGTHPDLEGQ- 175 (671)
T ss_dssp CEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCC-HHHHHHCSCTTCEEEEEESCCBTTSGGGTTT-
T ss_pred EeeccccccCCCccccccccccccccccCcCccccccCcChhhcCcc-HHHHhcCCCCCCEEEEEcCCcCCCChhhcCC-
Confidence 443110 001 124444 4433367999999999999999999999742
Q ss_pred CCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEE
Q 036374 125 FGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIA 204 (706)
Q Consensus 125 ~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~ 204 (706)
...++++..+.... ...++.|. .||||||||||||+.. + ..+.||||+|+|+
T Consensus 176 ------------~~~~~~~~~~~~~~------~~~~~~d~-~gHGT~VAGiiaa~~~-~--------~g~~GvAp~a~l~ 227 (671)
T d1r6va_ 176 ------------VIAGYRPAFDEELP------AGTDSSYG-GSAGTHVAGTIAAKKD-G--------KGIVGVAPGAKIM 227 (671)
T ss_dssp ------------BCCEEEGGGTEEEC------TTCBCCTT-CSHHHHHHHHHHCCCS-S--------SSCCCSCTTSEEE
T ss_pred ------------cccCccccccCCCC------CCCcCccc-CCCCccccceeeeecc-c--------cceeeecCcceEE
Confidence 22233332222111 12345566 8999999999999742 1 1238999999999
Q ss_pred EEEeecCC-----CC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC-
Q 036374 205 AYRVCHYP-----WP-CNEADILAAFDDAIADGVDIILTGATYGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKP- 277 (706)
Q Consensus 205 ~~kv~~~~-----~g-~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~- 277 (706)
++|++++. .+ ...+.+++||+||+++|++|||||||+.. ....+..++..+.++|+++|+||||++.+.
T Consensus 228 ~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~----~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~ 303 (671)
T d1r6va_ 228 PIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG----YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSH 303 (671)
T ss_dssp EEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSCSSSCC
T ss_pred EEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEeccccccc----CChHHHHHHHHHHhccCcEEEEEecCCCCcc
Confidence 99999721 12 56778999999999999999999999872 335677788889999999999999998754
Q ss_pred CCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcc
Q 036374 278 ASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLV 357 (706)
Q Consensus 278 ~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 357 (706)
...++..|++|+|||++.+.
T Consensus 304 ~~~Pa~~~~vi~Vga~~~~~------------------------------------------------------------ 323 (671)
T d1r6va_ 304 HQYPAGYPGVIQVAALDYYG------------------------------------------------------------ 323 (671)
T ss_dssp CCBTTTSTTCEEEEEEEEET------------------------------------------------------------
T ss_pred ccCCccCCceEEEEEecCCC------------------------------------------------------------
Confidence 35567889999999976431
Q ss_pred cccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCccc
Q 036374 358 KGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVH 437 (706)
Q Consensus 358 ~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a 437 (706)
....++
T Consensus 324 --------------------------------------------------------------------------~~~~~a 329 (671)
T d1r6va_ 324 --------------------------------------------------------------------------GTFRVA 329 (671)
T ss_dssp --------------------------------------------------------------------------TEEEEC
T ss_pred --------------------------------------------------------------------------Ccceee
Confidence 012478
Q ss_pred ccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCC-----CCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCC
Q 036374 438 PFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSN-----HPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDW 512 (706)
Q Consensus 438 ~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~-----~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~l 512 (706)
+||+|||.. ||+|||++|+++++....... .......+.|..++|||||||||||++|||+|++|+|
T Consensus 330 ~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~y~~~sGTS~AaP~VaG~aALl~~~~p~l 401 (671)
T d1r6va_ 330 GFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNA 401 (671)
T ss_dssp SSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTC
T ss_pred eccCCCCCc--------eEEecCCCeEeecCCCCccccccccccccccCCCeeeeecCHHHHHHHHHHHHHHHHHHCCCC
Confidence 999999986 999999999999875321111 1111235679999999999999999999999999999
Q ss_pred CHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCCcCcc
Q 036374 513 SPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATNPGLV 556 (706)
Q Consensus 513 sp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~~~lv 556 (706)
+++|||++|++||+++.. +..+..||||+||+.+||+..+.
T Consensus 402 t~~~v~~~L~~tA~~~~~---~g~~~~~G~G~vna~~Av~~~~~ 442 (671)
T d1r6va_ 402 KPWQIRKLLENTAFDFNG---NGWDHDTGYGLVKLDAALQGPLP 442 (671)
T ss_dssp CHHHHHHHHHHHCBCSSS---SSCBTTTBTCBCCHHHHHHCCCC
T ss_pred CHHHHHHHHHhhCccCCC---CCCCCCcccChhCHHHHhhCcCC
Confidence 999999999999998765 45678999999999999986553
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=1.5e-49 Score=412.96 Aligned_cols=267 Identities=24% Similarity=0.237 Sum_probs=215.0
Q ss_pred CCccccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcc
Q 036374 83 RSWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTR 162 (706)
Q Consensus 83 ~s~~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~ 162 (706)
+..+.|+++ .+|+.+.+|+||+|||||||||++||+|.++ ...+++|. .....+.
T Consensus 13 w~l~~i~~~-~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~-------------~~~~~~~~-----------~~~~~~~ 67 (280)
T d1dbia_ 13 YGPQNTYTD-YAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK-------------VIKGYDFV-----------DNDYDPM 67 (280)
T ss_dssp CTTGGGTHH-HHTTTCCCCTTCEEEEEESCCCTTSTTTTTT-------------EEEEEETT-----------TTBSCCC
T ss_pred cChhhCCHH-HHHhccCCCCCeEEEEEccCcCCCChhhcCC-------------eeeccccc-----------CCCCccc
Confidence 455678888 9999999999999999999999999999642 22222221 1234567
Q ss_pred cccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCC
Q 036374 163 EYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYG 242 (706)
Q Consensus 163 D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~ 242 (706)
|. .+|||||||+|+|...+ .+.+.||||+|+|+.+|+++....+...++++||+++++.|++|||+|||..
T Consensus 68 d~-~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~iin~S~g~~ 138 (280)
T d1dbia_ 68 DL-NNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCD 138 (280)
T ss_dssp CS-SSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSC
T ss_pred cc-cccccceeEeeeccccC--------CCceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHHHHcCCcEeecccccc
Confidence 87 99999999999987532 2334899999999999999833348899999999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCC
Q 036374 243 FAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMK 322 (706)
Q Consensus 243 ~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 322 (706)
. ..+....+...+.++|+++|+||||+|......+...+++|+||+.+.+
T Consensus 139 ~----~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~~-------------------------- 188 (280)
T d1dbia_ 139 C----HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY-------------------------- 188 (280)
T ss_dssp C----CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT--------------------------
T ss_pred c----cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecCC--------------------------
Confidence 2 2344556677888999999999999998766777788999999986533
Q ss_pred CceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEech
Q 036374 323 GNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKM 402 (706)
Q Consensus 323 ~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~ 402 (706)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T d1dbia_ 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcc
Q 036374 403 EDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRF 482 (706)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~ 482 (706)
+.++.||++||.. |++|||.+|++... .
T Consensus 189 -------------------------------~~~a~~S~~g~~~--------d~~apg~~i~~~~~-------------~ 216 (280)
T d1dbia_ 189 -------------------------------DRLASFSNYGTWV--------DVVAPGVDIVSTIT-------------G 216 (280)
T ss_dssp -------------------------------SCBCTTBCCSTTC--------CEEEECSSEEEEET-------------T
T ss_pred -------------------------------CCcCCcCCCCCcc--------cccCCccceecccc-------------C
Confidence 4578999999976 99999999999876 3
Q ss_pred cceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCC
Q 036374 483 VKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATN 552 (706)
Q Consensus 483 ~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~ 552 (706)
..|..++|||||||+|||++|||++. .+++.+||++|++||+++.. .+..||+|+||+.+||+
T Consensus 217 ~~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~-----~~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 217 NRYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG-----TGTYFKYGRINSYNAVT 279 (280)
T ss_dssp TEEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT-----BTTTBSSEECCHHHHHT
T ss_pred cceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC-----CCCcCCCCeEcHHHHcC
Confidence 56999999999999999999999995 56899999999999998754 45679999999999985
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=1.1e-48 Score=406.54 Aligned_cols=264 Identities=24% Similarity=0.284 Sum_probs=221.6
Q ss_pred CccccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeec-CCCCCcc
Q 036374 84 SWDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYY-SGINTTR 162 (706)
Q Consensus 84 s~~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~-~~~~~~~ 162 (706)
..+.|+++ ++|+.+ +|+||+|+|||||||++||+|.++ . +..++| .+...|.
T Consensus 14 ~l~~i~a~-~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~~-------------~------------~~~~~~~~~~~~~~ 66 (279)
T d1thma_ 14 GPQKIQAP-QAWDIA-EGSGAKIAIVDTGVQSNHPDLAGK-------------V------------VGGWDFVDNDSTPQ 66 (279)
T ss_dssp HHHHTTHH-HHHTTC-CCTTCEEEEEESCCCTTCTTTTTT-------------E------------EEEEETTTTBSCCC
T ss_pred ChhhCCHH-HHHhcc-CCCCcEEEEEcCCCCCCChhhcCC-------------e------------eccccccccCcccc
Confidence 34568888 999987 999999999999999999999642 1 222233 2345677
Q ss_pred cccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCC
Q 036374 163 EYQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYG 242 (706)
Q Consensus 163 D~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~ 242 (706)
|. .+|||||||+|++...++ ..+.|+||+|+|+.+|++.....+...+++++|+++++.+++|||+|||..
T Consensus 67 d~-~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~i~n~S~G~~ 137 (279)
T d1thma_ 67 NG-NGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGT 137 (279)
T ss_dssp CS-SSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBS
T ss_pred cc-cccccccceeeeeccCCC--------ccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCCceeccccCcc
Confidence 88 999999999999985432 233899999999999999833347889999999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCC
Q 036374 243 FAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMK 322 (706)
Q Consensus 243 ~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 322 (706)
. .......+...+.++|+++|+|+||+|......+...+++++|||++.+
T Consensus 138 ~----~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~~-------------------------- 187 (279)
T d1thma_ 138 V----GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN-------------------------- 187 (279)
T ss_dssp S----CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT--------------------------
T ss_pred c----cchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccCC--------------------------
Confidence 2 2345566777888999999999999998877777888999999987643
Q ss_pred CceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEech
Q 036374 323 GNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKM 402 (706)
Q Consensus 323 ~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~ 402 (706)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T d1thma_ 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcc
Q 036374 403 EDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRF 482 (706)
Q Consensus 403 ~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~ 482 (706)
+.++.||++||+. ||.|||.+|+++.+ +
T Consensus 188 -------------------------------~~~~~~S~~G~~~--------di~Apg~~i~~~~~-------------~ 215 (279)
T d1thma_ 188 -------------------------------DNKSSFSTYGSWV--------DVAAPGSSIYSTYP-------------T 215 (279)
T ss_dssp -------------------------------SCBCTTCCCCTTC--------CEEEECSSEEEEET-------------T
T ss_pred -------------------------------CCCccccCCCceE--------EEeeeeeccccccC-------------c
Confidence 4578999999987 99999999999887 3
Q ss_pred cceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCC
Q 036374 483 VKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATN 552 (706)
Q Consensus 483 ~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~ 552 (706)
+.|..++|||||||+|||++|||+|.+| ++.+||++|++||+++.. .+..||+|+||+.+||+
T Consensus 216 ~~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~g-----~~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 216 STYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISG-----TGTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp TEEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCTT-----BTTTBSSEECCHHHHHH
T ss_pred ccccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCCC-----CCCcceeeeEcHHHhhC
Confidence 5699999999999999999999999765 799999999999998754 46679999999999985
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=6.3e-49 Score=434.14 Aligned_cols=408 Identities=19% Similarity=0.198 Sum_probs=239.4
Q ss_pred ccccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccc
Q 036374 85 WDFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREY 164 (706)
Q Consensus 85 ~~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~ 164 (706)
..+++.+ .+|. .+|+||+|||||||||++||+|.++ ...++++..+. ...+|.|.
T Consensus 8 ~~~i~a~-~~~~--~~G~gv~VaviDtGid~~Hp~~~~~-------------~~~~~~~~~~~---------~~~~~~d~ 62 (435)
T d1v6ca_ 8 QTFVGAT-VLSD--SQAGNRTICIIDSGYDRSHNDLNAN-------------NVTGTNNSGTG---------NWYQPGNN 62 (435)
T ss_dssp HHHTTGG-GSCC--TTGGGCEEEEEESCCCTTSTTTTTS-------------EEEECCCTTSC---------CTTCCCSS
T ss_pred HhhcCcc-hhhh--cCCCCcEEEEEcCCCCCCChhhccC-------------eeeeeccCCCC---------CCCCCCCC
Confidence 3467777 7776 4899999999999999999999742 11122221111 12457788
Q ss_pred cCCCcccceeecccccccCCCcccCCCcceeeccC--CCeEEEEEeecCCCCCCHHHHHHHHHHHHH-CCCcEEEEcccC
Q 036374 165 QLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVP--SARIAAYRVCHYPWPCNEADILAAFDDAIA-DGVDIILTGATY 241 (706)
Q Consensus 165 ~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP--~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~-~gv~VIN~SlG~ 241 (706)
+||||||||||||+..+ ..+.|||| +++|+.+|++.+...+...++++||+++++ .+++|||+|||.
T Consensus 63 -~gHGThvAgiiag~~~~---------~g~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~g~ 132 (435)
T d1v6ca_ 63 -NAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGG 132 (435)
T ss_dssp -CCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCCB
T ss_pred -CCcHHHHHHHHhccCCC---------CceEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEecccCC
Confidence 99999999999997521 12389999 899999999983333677789999999996 699999999998
Q ss_pred CCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEE--eeeeccC-
Q 036374 242 GFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTL--VGDAVNP- 318 (706)
Q Consensus 242 ~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~--~g~~~~~- 318 (706)
.. ....+..++..+.++|+++|+||||+|....+.++..+++|+||+++.+......-..+....+ +|..+..
T Consensus 133 ~~----~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG~~i~st 208 (435)
T d1v6ca_ 133 SG----STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILST 208 (435)
T ss_dssp SC----CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEECSSEEEE
T ss_pred CC----CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecccceeee
Confidence 72 2345566777889999999999999999888888899999999999876543222122211111 1111100
Q ss_pred CCCCCceeeeEeccC-CCCC-CC---CcccccccCCC-CCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCC
Q 036374 319 FTMKGNKFPLSYGKT-NASY-PC---SELASRQCSLF-CLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHP 392 (706)
Q Consensus 319 ~~~~~~~~~lv~~~~-~~~~-~~---~~~~~~~c~~~-~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~ 392 (706)
............... .... .. .......|... ........+.+..+...............-.++...... .
T Consensus 209 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 286 (435)
T d1v6ca_ 209 VTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQ--G 286 (435)
T ss_dssp CSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEECCSCS--S
T ss_pred eecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceeeccCCc--c
Confidence 000000000000000 0000 00 00000001000 000111222222222211111111101111111000000 0
Q ss_pred cCccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCC--CCCCCCCceEecCCcEEecccCC
Q 036374 393 TPFPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKI--TPDIIKPDISAPAVQILAAYTGG 470 (706)
Q Consensus 393 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~--~~~~~KPDi~APG~~I~sa~~~~ 470 (706)
...+ ............ ....+..+++.+|... .....|||+.+||..|.++....
T Consensus 287 ~~~~-------~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~ 343 (435)
T d1v6ca_ 287 SSYP-------EINSTKACKTAG----------------AKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLA 343 (435)
T ss_dssp SSCT-------HHHHHHHHHHTT----------------CSEEEEECCSSSCSCCCCEEECTTCCCCSCEEEECHHHHHH
T ss_pred ccce-------eeeeceeecccC----------------CcceEEeccCCCCCcCCccccccCCceEEEEEEeccccccc
Confidence 0000 000111111111 1122334445555442 12467999999999987654211
Q ss_pred C----CCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCC
Q 036374 471 W----GPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHID 546 (706)
Q Consensus 471 ~----~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id 546 (706)
. .............|..|||||||||||||++|||+|+||+|+++|||++||+||+++.. +..+++||+|+||
T Consensus 344 ~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~~---~~~~~~~G~G~vn 420 (435)
T d1v6ca_ 344 LKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSV---AGRDNQTGYGMIN 420 (435)
T ss_dssp HGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSS---SSCBTTTBTCBCC
T ss_pred cccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccCC---CCCCCCcccceec
Confidence 0 00000011124569999999999999999999999999999999999999999998855 5678899999999
Q ss_pred ccccCCcCcccccChhhHHhhhcc
Q 036374 547 PVKATNPGLVYEVLEGDYIKMLCG 570 (706)
Q Consensus 547 ~~~Al~~~lv~~~~~~~~~~~lc~ 570 (706)
+.+|+ +||...|.
T Consensus 421 ~~~A~-----------~~l~~~~~ 433 (435)
T d1v6ca_ 421 AVAAK-----------AYLDESCT 433 (435)
T ss_dssp HHHHH-----------HHHHHCTT
T ss_pred HHHHH-----------HHHHhcCC
Confidence 99994 46666664
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=1.4e-48 Score=406.20 Aligned_cols=263 Identities=26% Similarity=0.332 Sum_probs=217.9
Q ss_pred cccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCccccc
Q 036374 86 DFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQ 165 (706)
Q Consensus 86 ~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~ 165 (706)
+.|+++ .+|.++++|+||+|||||||||++||+|+.. .+++|..+ ..++.+.+
T Consensus 9 ~~i~a~-~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~~---------------~~~~~~~~-----------~~~~~~~~ 61 (281)
T d1to2e_ 9 SQIKAP-ALHSQGYTGSNVKVAVIDSGIDSSHPDLKVA---------------GGASMVPS-----------ETNPFQDN 61 (281)
T ss_dssp HHTTHH-HHHHHTCSCTTCEEEEEESCCCTTCTTCCEE---------------EEEECCTT-----------CCCTTCCS
T ss_pred HHhCcH-HHHHCCCCCCCeEEEEECCCCCCCChhhhhc---------------CCccccCC-----------CCCCCcCc
Confidence 567888 9999999999999999999999999999521 11222111 23333332
Q ss_pred CCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCC
Q 036374 166 LGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-CNEADILAAFDDAIADGVDIILTGATYGFA 244 (706)
Q Consensus 166 ~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~ 244 (706)
.+|||||||||+|.... ....|+||+|+|+.+|++. ..+ +...+++++|+++++.+++|||+|||..
T Consensus 62 ~~HGT~vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~-~~~~~~~~~~~~ai~~a~~~~~~v~n~S~g~~-- 129 (281)
T d1to2e_ 62 NSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLG-ADGSGQYSWIINGIEWAIANNMDVINMSLGGP-- 129 (281)
T ss_dssp SSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSC-TTSEECHHHHHHHHHHHHHTTCSEEEECEEBS--
T ss_pred CCCCceeecccccCCCC---------CCcceeecccEEEEEEEeC-CCCCcCHHHHHHHHHHHHhccccccccccCCC--
Confidence 79999999999987421 1238999999999999998 444 6788999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC----CcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCC
Q 036374 245 FDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPA----STVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFT 320 (706)
Q Consensus 245 ~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~----~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 320 (706)
.....+..+++.+.++|+++|+||||+|.... ..++..+++|+||+.+.+
T Consensus 130 --~~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------ 183 (281)
T d1to2e_ 130 --SGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS------------------------ 183 (281)
T ss_dssp --CCCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT------------------------
T ss_pred --cchHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecCC------------------------
Confidence 23456777888889999999999999986532 335577889999987643
Q ss_pred CCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEe
Q 036374 321 MKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVIL 400 (706)
Q Consensus 321 ~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i 400 (706)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T d1to2e_ 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCC
Q 036374 401 KMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDH 480 (706)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~ 480 (706)
+.++.||++||.. |++|||.+|+++.+
T Consensus 184 ---------------------------------~~~~~~S~~G~~~--------d~~apG~~i~s~~~------------ 210 (281)
T d1to2e_ 184 ---------------------------------NQRASFSSVGPEL--------DVMAPGVSIQSTLP------------ 210 (281)
T ss_dssp ---------------------------------SCBCTTCCCSTTC--------CEEEECSSEEEEET------------
T ss_pred ---------------------------------CCCCcccCCCCCc--------cccCCCCCceeecC------------
Confidence 4578899999977 99999999999877
Q ss_pred cccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCCc
Q 036374 481 RFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATNP 553 (706)
Q Consensus 481 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~~ 553 (706)
++.|..++|||||||+|||++|||+|++|.|++++||++|++||+++.+ +..||+|+||+.+|++.
T Consensus 211 -~~~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~------~~~~G~G~ld~~~A~~~ 276 (281)
T d1to2e_ 211 -GNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVQAAAQH 276 (281)
T ss_dssp -TTEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCSC------HHHHTTCBCCHHHHTSS
T ss_pred -CCeeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC------CCCcccCcccHHHHHhh
Confidence 3568999999999999999999999999999999999999999998754 56799999999999985
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=1.4e-48 Score=404.56 Aligned_cols=261 Identities=26% Similarity=0.359 Sum_probs=216.3
Q ss_pred cccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCccccc
Q 036374 86 DFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQ 165 (706)
Q Consensus 86 ~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~ 165 (706)
++|+++ .+|.++++|+||+|||||||||++||+|+. ..+++|. .+...+.|.
T Consensus 9 ~~i~~~-~~~~~g~tG~gv~VaViDtGv~~~Hp~l~~---------------~~~~~~~-----------~~~~~~~d~- 60 (274)
T d1r0re_ 9 PLIKAD-KVQAQGFKGANVKVAVLDTGIQASHPDLNV---------------VGGASFV-----------AGEAYNTDG- 60 (274)
T ss_dssp HHTTHH-HHHHHTCSCTTCEEEEEESCCCTTCTTCCE---------------EEEEECS-----------TTCCTTCCS-
T ss_pred hhcChH-HHHHcCCCCCCeEEEEECCCCCCCChhhcc---------------cCCcccc-----------CCCCCCCCc-
Confidence 668888 999999999999999999999999999942 1112221 123456677
Q ss_pred CCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC-CCHHHHHHHHHHHHHCCCcEEEEcccCCCC
Q 036374 166 LGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP-CNEADILAAFDDAIADGVDIILTGATYGFA 244 (706)
Q Consensus 166 ~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g-~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~ 244 (706)
++|||||||||++.... . ...|+||+|+|+.+|+++ ..+ +..++++++++++.+++++|||+|||...
T Consensus 61 ~gHGT~vAgii~~~~~~--------~-~~~gvap~a~i~~~~~~~-~~~~~~~~~i~~ai~~a~~~~~~i~n~S~~~~~- 129 (274)
T d1r0re_ 61 NGHGTHVAGTVAALDNT--------T-GVLGVAPSVSLYAVKVLN-SSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS- 129 (274)
T ss_dssp SSHHHHHHHHHHCCSSS--------S-BCCCSSTTSEEEEEECSC-TTSEECHHHHHHHHHHHHHTTCSEEEECEEBSS-
T ss_pred ccccccccccccccccc--------c-cccccCCCcEEEEEEEeC-CCCCcCHHHHHHHHHHHHhcCCceecccccccc-
Confidence 89999999999987431 1 138999999999999998 444 67899999999999999999999999872
Q ss_pred CCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC----CcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCC
Q 036374 245 FDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPA----STVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFT 320 (706)
Q Consensus 245 ~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~----~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 320 (706)
..........++.++++++|+||||+|.... ..+...+++|+|||.+.+
T Consensus 130 ---~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------ 182 (274)
T d1r0re_ 130 ---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN------------------------ 182 (274)
T ss_dssp ---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT------------------------
T ss_pred ---chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECCC------------------------
Confidence 2234455666788999999999999986532 334567889999987643
Q ss_pred CCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEe
Q 036374 321 MKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVIL 400 (706)
Q Consensus 321 ~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i 400 (706)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T d1r0re_ 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCC
Q 036374 401 KMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDH 480 (706)
Q Consensus 401 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~ 480 (706)
+.++.||++||.. ||+|||++|+++.+
T Consensus 183 ---------------------------------~~~~~~s~~g~~~--------di~APG~~i~~~~~------------ 209 (274)
T d1r0re_ 183 ---------------------------------SNRASFSSVGAEL--------EVMAPGAGVYSTYP------------ 209 (274)
T ss_dssp ---------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEET------------
T ss_pred ---------------------------------CCcccccCCCCCE--------EEEecCCCcccccC------------
Confidence 4578899999854 99999999999887
Q ss_pred cccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCC
Q 036374 481 RFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATN 552 (706)
Q Consensus 481 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~ 552 (706)
.+.|..++|||||||+|||++|||+|++|+|++++||++|++||+++. .+..||+|+||+.+||+
T Consensus 210 -~~~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~------~~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 210 -TNTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG------SSFYYGKGLINVEAAAQ 274 (274)
T ss_dssp -TTEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS------CHHHHTTCBCCHHHHTC
T ss_pred -CCCeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC------CCCceEcCeecHHHhcC
Confidence 356899999999999999999999999999999999999999999864 36789999999999986
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=3.8e-48 Score=400.30 Aligned_cols=261 Identities=27% Similarity=0.344 Sum_probs=219.0
Q ss_pred cccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCccccc
Q 036374 86 DFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQ 165 (706)
Q Consensus 86 ~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~ 165 (706)
+.|+++ .+|..+++|+||+||||||||| +||+|... .+.+|. .+..++.|.
T Consensus 9 ~~i~~~-~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~~---------------~~~~~~-----------~~~~~~~d~- 59 (269)
T d1gcia_ 9 SRVQAP-AAHNRGLTGSGVKVAVLDTGIS-THPDLNIR---------------GGASFV-----------PGEPSTQDG- 59 (269)
T ss_dssp HHTTHH-HHHHTTCSCTTCEEEEEESCCC-CCTTCCEE---------------EEEECS-----------TTCCSCSCS-
T ss_pred hHhCcH-HHHhCCCCCCCeEEEEECCCCC-CCcccCcc---------------cccccc-----------CCCCCcccc-
Confidence 458888 9999999999999999999998 89999521 112221 123456677
Q ss_pred CCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCC
Q 036374 166 LGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAF 245 (706)
Q Consensus 166 ~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~ 245 (706)
.+|||||||||++... .....|+||+|+|+.+|++..........+.+++++++..++++||+|||...
T Consensus 60 ~~HGT~vAgii~~~~~---------~~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~in~s~g~~~-- 128 (269)
T d1gcia_ 60 NGHGTHVAGTIAALNN---------SIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS-- 128 (269)
T ss_dssp SSHHHHHHHHHHCCCS---------SSBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSS--
T ss_pred chhhheecccccccCC---------CccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhcccccccccccccc--
Confidence 8999999999988742 22238999999999999998333477888999999999999999999999872
Q ss_pred CChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCce
Q 036374 246 DFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNK 325 (706)
Q Consensus 246 ~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 325 (706)
.......+...+.++|+++|+||||+|......+...|++|+||+++.+
T Consensus 129 --~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~----------------------------- 177 (269)
T d1gcia_ 129 --PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN----------------------------- 177 (269)
T ss_dssp --CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT-----------------------------
T ss_pred --ccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC-----------------------------
Confidence 2234556677889999999999999998777777888999999987643
Q ss_pred eeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhH
Q 036374 326 FPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDF 405 (706)
Q Consensus 326 ~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~ 405 (706)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccce
Q 036374 406 ERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKY 485 (706)
Q Consensus 406 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y 485 (706)
+.++.||++||.. ||+|||.++.++.+ ...|
T Consensus 178 ----------------------------~~~~~~S~~G~~~--------di~Apg~~~~~~~~-------------~~~~ 208 (269)
T d1gcia_ 178 ----------------------------NNRASFSQYGAGL--------DIVAPGVNVQSTYP-------------GSTY 208 (269)
T ss_dssp ----------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEET-------------TTEE
T ss_pred ----------------------------CCcccccCCCCCc--------eEEEeeecceeccC-------------CCce
Confidence 3578899999976 99999999998877 3569
Q ss_pred eEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCC
Q 036374 486 NILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATN 552 (706)
Q Consensus 486 ~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~ 552 (706)
..++|||||||+|||++|||+|++|+||+++||++|++||+++.. +..||+|+||+++|++
T Consensus 209 ~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g~------~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 209 ASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGS------TNLYGSGLVNAEAATR 269 (269)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCSC------HHHHTTCBCCHHHHTC
T ss_pred EecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC------CCCcccCeEcHHHhcC
Confidence 999999999999999999999999999999999999999998643 5679999999999986
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=9.8e-43 Score=366.53 Aligned_cols=288 Identities=23% Similarity=0.209 Sum_probs=214.0
Q ss_pred cccCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCccccc
Q 036374 86 DFMGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQ 165 (706)
Q Consensus 86 ~~ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~ 165 (706)
+.|+++ .+|..+++|+||+|+|||||||++||+|.+. ...+++|....... ...+.|.
T Consensus 11 ~~i~~~-~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~-------------~~~~~~~~~~~~~~-------~~~~~d~- 68 (309)
T d2ixta1 11 KAIYNN-DTLTSTTGGSGINIAVLDTGVNTSHPDLVNN-------------VEQCKDFTGATTPI-------NNSCTDR- 68 (309)
T ss_dssp HHHHTC-TTCCCCCCCTTCEEEEEESCCCTTCTTTTTT-------------EEEEEESSSSSSCE-------ETCCCCS-
T ss_pred hhcCCh-hhhccCCCCCCeEEEEEccCCCCCChhHhcc-------------ccccccccCCCCCC-------CCCcccc-
Confidence 446777 8999999999999999999999999999742 22222221111100 1234566
Q ss_pred CCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHC-----CCcEEEEccc
Q 036374 166 LGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIAD-----GVDIILTGAT 240 (706)
Q Consensus 166 ~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~-----gv~VIN~SlG 240 (706)
.||||||||||+|....+ ...+.||||+|+|+.++++.....+..++++++++++++. ...|+|+|++
T Consensus 69 ~gHGT~VAgiiaa~~~~~-------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~s~~ 141 (309)
T d2ixta1 69 NGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLG 141 (309)
T ss_dssp SSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEECCC
T ss_pred cccccccccccccccccc-------chhhhhhhhhccceeeeeecCCCCccccccccccccccccccccccccccccccc
Confidence 899999999999875321 2223899999999999998833347888999999988874 4478999998
Q ss_pred CCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCC--cccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccC
Q 036374 241 YGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPAS--TVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNP 318 (706)
Q Consensus 241 ~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~--~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~ 318 (706)
... .......++..+.++|+++|+||||++..... .+...+++++|++.+.........
T Consensus 142 ~~~----~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~~~--------------- 202 (309)
T d2ixta1 142 SSA----NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTYR--------------- 202 (309)
T ss_dssp BSS----CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTEEE---------------
T ss_pred ccc----cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhcccccccccccccccccc---------------
Confidence 872 23455566677889999999999999876543 334567888887764321000000
Q ss_pred CCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEE
Q 036374 319 FTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTV 398 (706)
Q Consensus 319 ~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~ 398 (706)
T Consensus 203 -------------------------------------------------------------------------------- 202 (309)
T d2ixta1 203 -------------------------------------------------------------------------------- 202 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCC
Q 036374 399 ILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPM 478 (706)
Q Consensus 399 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~ 478 (706)
.........++++|+.. ....||||+|||.+|+++.+
T Consensus 203 -------------------------------~~~~~~~~~~~~~~~~~--~~~~~vdi~apG~~~~s~~~---------- 239 (309)
T d2ixta1 203 -------------------------------VADYSSRGYISTAGDYV--IQEGDIEISAPGSSVYSTWY---------- 239 (309)
T ss_dssp -------------------------------ECTTSCCCCTTTTTSSS--CCTTCCCEEEECSSEEEECT----------
T ss_pred -------------------------------ccccccccccccccccc--cCCCcceeecCCCceeeecC----------
Confidence 00112344567777776 66789999999999999877
Q ss_pred CCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCC----CCCCCCCCCCCCCCc
Q 036374 479 DHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTV----NRGREFDYGSGHIDP 547 (706)
Q Consensus 479 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~----~~~~~~~~G~G~id~ 547 (706)
...|..++|||||||+|||++|||+|++|+|+++|||++|++||+++.... ....++.+|+|++|+
T Consensus 240 ---~~~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 240 ---NGGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDYASGFGFARV 309 (309)
T ss_dssp ---TSSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBSTTCCSSSBTTTBTCBCCC
T ss_pred ---CCcceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCcCCccCCCcccCCCEecC
Confidence 356899999999999999999999999999999999999999999876532 234678899999874
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=3.7e-42 Score=363.46 Aligned_cols=302 Identities=23% Similarity=0.229 Sum_probs=225.4
Q ss_pred ccccCCccccccC-CCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCccc
Q 036374 85 WDFMGFPETVKRE-PTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTRE 163 (706)
Q Consensus 85 ~~~ig~~~~~~~~-~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D 163 (706)
.++++++ .+|.. +++|+||+|||||||||++||+|.... .|. .++...+.+....++.|
T Consensus 5 ~~~~~~~-~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~~~-------------~~~~~~~~~~~~~~~~d 64 (318)
T d1wmda2 5 RGIVKAD-VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------AFR-------------GKITALYALGRTNNAND 64 (318)
T ss_dssp HHHTTHH-HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------TTT-------------TCEEEEEETTTTTCCCC
T ss_pred hcccCch-hHHHccCccccCeEEEEEcCCcCCCCcccccCc------ccC-------------CcEEeecCCCCCCCCCC
Confidence 3567888 88886 999999999999999999999996421 111 23333334433456677
Q ss_pred ccCCCcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCC---CCHHHHHHHHHHHHHCCCcEEEEccc
Q 036374 164 YQLGHGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWP---CNEADILAAFDDAIADGVDIILTGAT 240 (706)
Q Consensus 164 ~~~gHGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g---~~~~~i~~ai~~ai~~gv~VIN~SlG 240 (706)
. .||||||||||+|+... ..||||+|+|+.+|+++ ..+ .....+..+++++...+++|+|+|||
T Consensus 65 ~-~gHGT~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~g 131 (318)
T d1wmda2 65 T-NGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMD-SGGGLGGLPSNLQTLFSQAYSAGARIHTNSWG 131 (318)
T ss_dssp S-SSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCC-TTSSCTTSCSSHHHHHHHHHHTTCSEEEECCC
T ss_pred C-CCCCccceeeccccccc-----------cchhhhcccceeeeeee-ecccccccchhhHHHHHHHHhcCCceeecccc
Confidence 7 99999999999987321 28999999999999998 433 34556788999999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcc--cCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccC
Q 036374 241 YGFAFDFAEDAVAIGAFHAMEKGILTAVPTGNMGPKPASTV--VVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNP 318 (706)
Q Consensus 241 ~~~~~~~~~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~--~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~ 318 (706)
..... ........+...+.++++++|+|+||.|....... ...+.++++.+..........
T Consensus 132 ~~~~~-~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---------------- 194 (318)
T d1wmda2 132 AAVNG-AYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGS---------------- 194 (318)
T ss_dssp BCCTT-CCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGGCG----------------
T ss_pred ccccc-ccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccccc----------------
Confidence 87333 33445555666677899999999999987765443 345667777665432200000
Q ss_pred CCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEE
Q 036374 319 FTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTV 398 (706)
Q Consensus 319 ~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~ 398 (706)
T Consensus 195 -------------------------------------------------------------------------------- 194 (318)
T d1wmda2 195 -------------------------------------------------------------------------------- 194 (318)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCC
Q 036374 399 ILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPM 478 (706)
Q Consensus 399 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~ 478 (706)
.......+..+|++||.. ....|||+.|||.+|+++.......... .
T Consensus 195 ------------------------------~~~~~~~~~~~s~~G~~~--~~~~~~~~~a~G~~i~~~~~~~~~~~~~-~ 241 (318)
T d1wmda2 195 ------------------------------YADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSF-W 241 (318)
T ss_dssp ------------------------------GGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCCGGGS-S
T ss_pred ------------------------------ccccccccccccccCCCc--CCCcccceeecCceEEeccccccccCcc-c
Confidence 001224577899999987 7789999999999999987654322111 1
Q ss_pred CCcccceeEeccccchhHHHHHHHHHHHhhC-----CCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCccccCC
Q 036374 479 DHRFVKYNILSGTSIASAFAAGAAAYVRSFH-----PDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDPVKATN 552 (706)
Q Consensus 479 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~~~Al~ 552 (706)
......|..++|||||||+|||++|||+|++ +.|++.+||++|++||+++.. +.+++.||||+||+.+||+
T Consensus 242 ~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~---~~~~~~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 242 ANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL---GYPNGNQGWGRVTLDKSLN 317 (318)
T ss_dssp EEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSS---CSSCTTTTTCBCCHHHHHT
T ss_pred cCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCC---CCCCCCeeeceecHHHHhC
Confidence 1223568889999999999999999999964 468999999999999998755 4567789999999999986
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=4.8e-42 Score=356.19 Aligned_cols=238 Identities=22% Similarity=0.258 Sum_probs=193.5
Q ss_pred CCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeec
Q 036374 97 EPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIA 176 (706)
Q Consensus 97 ~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ 176 (706)
...+|+||+|+|||||||++||+|.+. .. ..+.+ ..++.|. +||||||||||
T Consensus 26 ~~~tG~Gv~VaViDsGid~~Hpdf~g~-------------~~------------~~~~~--~~~~~d~-~gHGT~VAgii 77 (279)
T d2pwaa1 26 DESAGQGSCVYVIDTGIEASHPEFEGR-------------AQ------------MVKTY--YYSSRDG-NGHGTHCAGTV 77 (279)
T ss_dssp CTTTTTTEEEEEEESCCCTTCGGGTTC-------------EE------------EEEES--SSCSSCS-SSHHHHHHHHH
T ss_pred cCCCCCCeEEEEECcCCCCCChhhcCC-------------ce------------eccCC--CCCcccc-cCccccccccc
Confidence 356999999999999999999999642 11 11111 1345677 89999999999
Q ss_pred ccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHC-------CCcEEEEcccCCCCCCChh
Q 036374 177 AGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIAD-------GVDIILTGATYGFAFDFAE 249 (706)
Q Consensus 177 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~-------gv~VIN~SlG~~~~~~~~~ 249 (706)
+|.. .|+||+|+|+.+|++.+......+.+.++++++... ++.|+|+|||.. ..
T Consensus 78 a~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~s~g~~-----~~ 138 (279)
T d2pwaa1 78 GSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG-----YS 138 (279)
T ss_dssp HCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE-----CC
T ss_pred cccc--------------cccCCCccccceeeecCCcccccccccchhheecccccccccccccceeccCCCc-----cc
Confidence 9863 799999999999999844447788899999988763 345999999986 33
Q ss_pred hHHHHHHHHHHhCCcEEEEecCCCCCCCCC-cccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCCceeee
Q 036374 250 DAVAIGAFHAMEKGILTAVPTGNMGPKPAS-TVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKGNKFPL 328 (706)
Q Consensus 250 ~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~-~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l 328 (706)
+.+..++..+.++|+++|+||||++..... .+...|++|+|||++.+
T Consensus 139 ~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~~-------------------------------- 186 (279)
T d2pwaa1 139 SSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY-------------------------------- 186 (279)
T ss_dssp HHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT--------------------------------
T ss_pred cccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEeec--------------------------------
Confidence 567777788899999999999999876433 45577899999987633
Q ss_pred EeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechhhHHHH
Q 036374 329 SYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKMEDFERV 408 (706)
Q Consensus 329 v~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~~~~~l 408 (706)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d2pwaa1 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCcccceeEe
Q 036374 409 KLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFVKYNIL 488 (706)
Q Consensus 409 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~ 488 (706)
+.++.||++||.. ||+|||.+|+++.+ ++.|..+
T Consensus 187 -------------------------g~~~~~S~~G~~~--------dv~APG~~i~s~~~-------------~~~~~~~ 220 (279)
T d2pwaa1 187 -------------------------DRRSSFSNYGSVL--------DIFGPGTDILSTWI-------------GGSTRSI 220 (279)
T ss_dssp -------------------------SBBCTTCCBSTTC--------CEEEECSSEEEEET-------------TTEEEEE
T ss_pred -------------------------CCCccccCCCCcc--------cccccccccccccc-------------CCcccCC
Confidence 4578999999976 99999999999987 3579999
Q ss_pred ccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCCCCCCCCCCCCCCCCc
Q 036374 489 SGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTVNRGREFDYGSGHIDP 547 (706)
Q Consensus 489 sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~~~~~~~~~G~G~id~ 547 (706)
+|||||||+|||++|||+|++|.++++++|. |++||++. ....+|+|++|+
T Consensus 221 sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~-------~~~~~g~g~~n~ 271 (279)
T d2pwaa1 221 SGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKG-------DLSNIPFGTVNL 271 (279)
T ss_dssp CSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEES-------CCBSCCTTSCCE
T ss_pred CcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCC-------CCCCCCCCChhh
Confidence 9999999999999999999999999887775 77888763 345689999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.7e-39 Score=341.11 Aligned_cols=280 Identities=16% Similarity=0.103 Sum_probs=189.9
Q ss_pred cCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCC
Q 036374 88 MGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLG 167 (706)
Q Consensus 88 ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~g 167 (706)
|+++ .+|..+.+|+||+|||||||||++||+|.++ ...+.+|.++..... ........|. .+
T Consensus 24 in~~-~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~-------------~~~~~~~~~~~~~~~---~~~~~~~~~~-~g 85 (334)
T d1p8ja2 24 LNVK-EAWAQGFTGHGIVVSILDDGIEKNHPDLAGN-------------YDPGASFDVNDQDPD---PQPRYTQMND-NR 85 (334)
T ss_dssp CCCH-HHHHTTCSCTTCEEEEEEBCCCTTCTTTGGG-------------BCGGGCEETTTTBSC---CCCCCCTTCT-TC
T ss_pred CCHH-HHHhcCCCCCCeEEEEEccCCCCCChhHhhc-------------cccCCCccccCCCCc---cccccccccC-cc
Confidence 6777 8999999999999999999999999999742 222233321111000 0001233456 89
Q ss_pred CcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHH-CCCcEEEEcccCCCCCC
Q 036374 168 HGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIA-DGVDIILTGATYGFAFD 246 (706)
Q Consensus 168 HGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~-~gv~VIN~SlG~~~~~~ 246 (706)
|||||||||++...++.. ..|+||+++++.+|+.. ....+.+.++.++++ .+++++|+|||......
T Consensus 86 HGT~vAgiia~~~~n~~~--------~~g~a~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~n~S~g~~~~~~ 153 (334)
T d1p8ja2 86 HGTRCAGEVAAVANNGVC--------GVGVAYNARIGGVRMLD----GEVTDAVEARSLGLNPNHIHIYSASWGPEDDGK 153 (334)
T ss_dssp HHHHHHHHHHCCSSSSSS--------CCCTTTTSEEEEEECSS----SCCCHHHHHHHHTSCTTTCCEEEECCBSCCSSS
T ss_pred chhhhhhhhhhccccccc--------cccccccccccchhhcc----ccccchHHHHHHHhhhcCCcEEeCCCCCCCcCc
Confidence 999999999998643222 28999999999999987 234456667777665 68999999999763221
Q ss_pred Ch--------hhHHHHHHHHHHhCCcEEEEecCCCCCCCCCcc----cCCCceEEEccccCCcceeeeEEeCCCeEEeee
Q 036374 247 FA--------EDAVAIGAFHAMEKGILTAVPTGNMGPKPASTV----VVAPWILTVAGSSIDRPFIDKAILGDGTTLVGD 314 (706)
Q Consensus 247 ~~--------~~~~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~~----~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~ 314 (706)
.. ......+...+..+|+++|+||||++....... ...+.+++|++...+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~~------------------ 215 (334)
T d1p8ja2 154 TVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQF------------------ 215 (334)
T ss_dssp CCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTT------------------
T ss_pred ccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCccccccccccccccccccC------------------
Confidence 11 111233344556789999999999875543221 123445666554322
Q ss_pred eccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcC
Q 036374 315 AVNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTP 394 (706)
Q Consensus 315 ~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~ 394 (706)
T Consensus 216 -------------------------------------------------------------------------------- 215 (334)
T d1p8ja2 216 -------------------------------------------------------------------------------- 215 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCc-----EEecccC
Q 036374 395 FPTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQ-----ILAAYTG 469 (706)
Q Consensus 395 ~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~-----I~sa~~~ 469 (706)
+..+.||++|+.. ..+..+||.. +.+...
T Consensus 216 ---------------------------------------g~~~~~s~~~~~~------~~~~~~~~~~~~~~~~~~~~~- 249 (334)
T d1p8ja2 216 ---------------------------------------GNVPWYSEACSST------LATTYSSGNQNEKQIVTTDLR- 249 (334)
T ss_dssp ---------------------------------------SCCCTTCCBCTTC------CEEEECCCSTTSCCEEEEETT-
T ss_pred ---------------------------------------CceeeecccCCcc------ccccccccccccccccccccC-
Confidence 3345556665544 1133333322 222211
Q ss_pred CCCCCCCCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCC--------CCCCCCCCC
Q 036374 470 GWGPSNHPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTV--------NRGREFDYG 541 (706)
Q Consensus 470 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~--------~~~~~~~~G 541 (706)
...|..++|||||||+|||++|||+|++|+|++.|||++|++||+++.... ....+..||
T Consensus 250 ------------~~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~~~~~~~~~~~~~~G 317 (334)
T d1p8ja2 250 ------------QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSYG 317 (334)
T ss_dssp ------------TEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECTTSCEEBTTTB
T ss_pred ------------CccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCccccccCCCcccCCCCc
Confidence 356889999999999999999999999999999999999999999764321 112456799
Q ss_pred CCCCCccccCCc
Q 036374 542 SGHIDPVKATNP 553 (706)
Q Consensus 542 ~G~id~~~Al~~ 553 (706)
+|+||+.+||+.
T Consensus 318 ~G~lna~~Av~~ 329 (334)
T d1p8ja2 318 YGLLDAGAMVAL 329 (334)
T ss_dssp TCBCCHHHHHHH
T ss_pred ceEeCHHHHHHH
Confidence 999999999874
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-38 Score=339.55 Aligned_cols=282 Identities=17% Similarity=0.111 Sum_probs=199.3
Q ss_pred cCCccccccCCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCC
Q 036374 88 MGFPETVKREPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLG 167 (706)
Q Consensus 88 ig~~~~~~~~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~g 167 (706)
|++. .+|..+++|+||+|||||||||++||+|.++-. ...+++|..+.. ......+. .+
T Consensus 33 in~~-~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~-----------~~~~~~~~~~~~--------~~~~~~~~-~~ 91 (339)
T d2id4a2 33 INVL-DLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC-----------AEGSWDFNDNTN--------LPKPRLSD-DY 91 (339)
T ss_dssp CCCH-HHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC-----------GGGCEETTTTBS--------CCCCCSTT-TT
T ss_pred cCHH-HHHhcCCCCCCcEEEEECcCcCCCChHHhcCcc-----------cccccccccCCC--------ccCCCccc-cc
Confidence 6777 899999999999999999999999999975311 011223321110 01223344 89
Q ss_pred CcccceeecccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHCCCcEEEEcccCCCCCCC
Q 036374 168 HGTHMASIAAGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIADGVDIILTGATYGFAFDF 247 (706)
Q Consensus 168 HGThVAgi~ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~~gv~VIN~SlG~~~~~~~ 247 (706)
||||||++|+|....+. .+.|+||+|+|+.+++.. ......++..++.++++. .+|+|+|+|.......
T Consensus 92 HGT~vag~iaa~~~~~~--------~~~Gvap~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~v~~~s~g~~~~~~~ 160 (339)
T d2id4a2 92 HGTRCAGEIAAKKGNNF--------CGVGVGYNAKISGIRILS--GDITTEDEAASLIYGLDV-NDIYSCSWGPADDGRH 160 (339)
T ss_dssp HHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECTT--SCCCHHHHHHHTTTTTTT-CSEEEECEESCCSSSC
T ss_pred ccceeeecccccccccc--------cccccccccccceEEEee--ccccchHHHHHHHHHHhh-CCEEeccCCCCCCccc
Confidence 99999999998754322 238999999999999876 346677778888777665 4999999997522111
Q ss_pred -------hhhH-HHHHHHHHHhCCcEEEEecCCCCCCCCCc--cc--CCCceEEEccccCCcceeeeEEeCCCeEEeeee
Q 036374 248 -------AEDA-VAIGAFHAMEKGILTAVPTGNMGPKPAST--VV--VAPWILTVAGSSIDRPFIDKAILGDGTTLVGDA 315 (706)
Q Consensus 248 -------~~~~-~~~a~~~a~~~Gv~vV~AAGN~G~~~~~~--~~--~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~ 315 (706)
.... ...+...+..+|+++|+||||++...... +. ..+.+++|++++.
T Consensus 161 ~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 220 (339)
T d2id4a2 161 LQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH-------------------- 220 (339)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT--------------------
T ss_pred ccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccccc--------------------
Confidence 1111 22333455568999999999987543221 11 2344454444332
Q ss_pred ccCCCCCCceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCc
Q 036374 316 VNPFTMKGNKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPF 395 (706)
Q Consensus 316 ~~~~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~ 395 (706)
T Consensus 221 -------------------------------------------------------------------------------- 220 (339)
T d2id4a2 221 -------------------------------------------------------------------------------- 220 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEechhhHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCC
Q 036374 396 PTVILKMEDFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSN 475 (706)
Q Consensus 396 p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~ 475 (706)
.+..+.||++|+.. ...++..+||..|.+....
T Consensus 221 -------------------------------------~g~~~~~s~~~~~~----~~~~~~~~~g~~~~s~~~~------ 253 (339)
T d2id4a2 221 -------------------------------------KDLHPPYSEGCSAV----MAVTYSSGSGEYIHSSDIN------ 253 (339)
T ss_dssp -------------------------------------TSCCCTTCCCCTTE----EEEEECSBTTBCEEEECST------
T ss_pred -------------------------------------cccccccccccCcc----ceeeeeeccccccceeccC------
Confidence 23456667776643 2345777889998876653
Q ss_pred CCCCCcccceeEeccccchhHHHHHHHHHHHhhCCCCCHHHHHHHHHhcccccCCCC---------CCCCCCCCCCCCCC
Q 036374 476 HPMDHRFVKYNILSGTSIASAFAAGAAAYVRSFHPDWSPSSIKSALMTTALLMNGTV---------NRGREFDYGSGHID 546 (706)
Q Consensus 476 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~P~lsp~~ik~~L~~TA~~~~~~~---------~~~~~~~~G~G~id 546 (706)
+..|..++|||||||||||++|||+|++|+||+.|||.+|++||.++.... +...+..||||+||
T Consensus 254 ------~~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~~G~G~ln 327 (339)
T d2id4a2 254 ------GRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKID 327 (339)
T ss_dssp ------TCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEEBTTTBTCBCC
T ss_pred ------CCccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCccccccCCCCCcCCCccchhhC
Confidence 356889999999999999999999999999999999999999999875431 12346679999999
Q ss_pred ccccCCcC
Q 036374 547 PVKATNPG 554 (706)
Q Consensus 547 ~~~Al~~~ 554 (706)
+.+||+..
T Consensus 328 ~~~Av~~a 335 (339)
T d2id4a2 328 AHKLIEMS 335 (339)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999853
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.96 E-value=1.9e-31 Score=284.97 Aligned_cols=308 Identities=14% Similarity=0.036 Sum_probs=187.9
Q ss_pred CCCCCCCcEEEEEccccCCCCcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeec
Q 036374 97 EPTVESDMIIGVLDNGIWPESDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIA 176 (706)
Q Consensus 97 ~~~~G~GVvVgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ 176 (706)
.+++|+||+|||||||||++||+|.+. |+ ..+..+ . ...+.|. ++|+||+++++
T Consensus 19 ~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~----~~~~~~-~------------~~~~~~~-~g~~~~~~g~~ 72 (357)
T d1t1ga_ 19 EGLDGQGQCIAIIALGGGYDETSLAQY--------FA----SLGVSA-P------------QVVSVSV-DGATNQPTGDP 72 (357)
T ss_dssp TTCCCTTCEEEEEESSCCCCHHHHHHH--------HH----HTTCCC-C------------CEEEEES-TTCCCCCCSCT
T ss_pred CCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hh----hcCCCC-C------------CCceeCC-CCCCCCCCCcc
Confidence 589999999999999999999999631 10 001100 0 1123355 79999999998
Q ss_pred ccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHH---CCCcEEEEcccCCCCCC--ChhhH
Q 036374 177 AGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIA---DGVDIILTGATYGFAFD--FAEDA 251 (706)
Q Consensus 177 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~---~gv~VIN~SlG~~~~~~--~~~~~ 251 (706)
++...+.. .....+.||||+|+|+.+|+.. . ...++.++++++. .+++|||+|||...... .....
T Consensus 73 ~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~-~----~~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~ 143 (357)
T d1t1ga_ 73 NGPDGEVE----LDIEVAGALAPGAKIAVYFAPN-T----DAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAA 143 (357)
T ss_dssp TSTHHHHH----HHHHHHHHHSTTSEEEEEECCS-S----HHHHHHHHHHHHHCTTTCCSEEEECCCEEGGGSCHHHHHH
T ss_pred cccccccc----CCcccceeecccCeEEEEeccc-C----CCchHHHHHHHHHhhhcCCeEEecccccCcCccccchHHH
Confidence 76532110 0112248999999999999987 2 3445566666654 68999999999862211 12234
Q ss_pred HHHHHHHHHhCCcEEEEecCCCCCCCCC--------cccCCCceEEEccccCCcceeeeEEeCCCeEEeeeeccCCCCCC
Q 036374 252 VAIGAFHAMEKGILTAVPTGNMGPKPAS--------TVVVAPWILTVAGSSIDRPFIDKAILGDGTTLVGDAVNPFTMKG 323 (706)
Q Consensus 252 ~~~a~~~a~~~Gv~vV~AAGN~G~~~~~--------~~~~~p~vitVga~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 323 (706)
+......+..+|+++|+|+||+|..... .....+++++|++....... +.... .+......
T Consensus 144 ~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~~-~~~~~~~~-- 212 (357)
T d1t1ga_ 144 MNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASA--------GRIER-ETVWNDGP-- 212 (357)
T ss_dssp HHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECS--------SCEEE-EEECBCHH--
T ss_pred HHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCCC--------Ccccc-ceeccccc--
Confidence 5566667778999999999999754321 22356778888776433110 00000 00000000
Q ss_pred ceeeeEeccCCCCCCCCcccccccCCCCCCCCcccccEEEEeecccchheeecCceEEEecCCCCCCCCcCccEEEechh
Q 036374 324 NKFPLSYGKTNASYPCSELASRQCSLFCLDENLVKGKILLCDNFRGDVETFRVGALGSIQPASTIMSHPTPFPTVILKME 403 (706)
Q Consensus 324 ~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~~~k~~~~~~~Ga~g~i~~~~~~~~~~~~~p~~~i~~~ 403 (706)
... .....+.... .
T Consensus 213 ----~~~-----------~~~~g~s~~~------------------------------------------~--------- 226 (357)
T d1t1ga_ 213 ----DGG-----------STGGGVSRIF------------------------------------------P--------- 226 (357)
T ss_dssp ----HHC-----------BCCCEECSSS------------------------------------------C---------
T ss_pred ----ccc-----------cccCCccccc------------------------------------------c---------
Confidence 000 0000000000 0
Q ss_pred hHHHHHHHHhcCCCcEEEEeeeeeecCCCCCcccccCCCCCCCCCCCCCCCceEecCCcEEecccCCCCCCCCCCCCccc
Q 036374 404 DFERVKLYINSTEKPQVHILRSMAIKDDAAPVVHPFSGRGPSKITPDIIKPDISAPAVQILAAYTGGWGPSNHPMDHRFV 483 (706)
Q Consensus 404 ~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~GP~~~~~~~~KPDi~APG~~I~sa~~~~~~~~~~~~~~~~~ 483 (706)
...........+++++++. .++.|||+.+++.......... .+
T Consensus 227 ------------------------~p~~~~~~~~~~~~~~~~~--~~~~~pd~~~~~~~~~~~~~~~-----------~~ 269 (357)
T d1t1ga_ 227 ------------------------LPSWQERANVPPSANPGAG--SGRGVPDVAGNADPATGYEVVI-----------DG 269 (357)
T ss_dssp ------------------------CCGGGTTSCCCCCSSTTCC--CCCEECSEEEECCTTEEEEEEE-----------TT
T ss_pred ------------------------cCcccccccccccccCCCC--CCceecceecccCCCCceEEec-----------CC
Confidence 0001124466778888877 8999999999976654432211 36
Q ss_pred ceeEeccccchhHHHHHHHHHHHhhCCC---CCHHHHHHHHHhcccccCCC------------CCCCCCCCCCCCCCCcc
Q 036374 484 KYNILSGTSIASAFAAGAAAYVRSFHPD---WSPSSIKSALMTTALLMNGT------------VNRGREFDYGSGHIDPV 548 (706)
Q Consensus 484 ~y~~~sGTSmAaP~VAG~aALl~~~~P~---lsp~~ik~~L~~TA~~~~~~------------~~~~~~~~~G~G~id~~ 548 (706)
.|..++|||||||||||++|||+|+++. +...+++++...+.+++... ..+.++..+|||++|+.
T Consensus 270 ~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~~~~~~~~~~~~a~~G~d~~tG~G~~n~~ 349 (357)
T d1t1ga_ 270 ETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIANRARIYQAGPGWDPCTGLGSPIGI 349 (357)
T ss_dssp EEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCBCCCSSSSCCSBCCSSSBTTTBTCEECHH
T ss_pred ceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecccccCCCCCCCCCcccCccCCCCCccCchhhHH
Confidence 7999999999999999999999998744 33445554444444443211 12356788999999988
Q ss_pred ccCCc
Q 036374 549 KATNP 553 (706)
Q Consensus 549 ~Al~~ 553 (706)
++++.
T Consensus 350 ~~~~~ 354 (357)
T d1t1ga_ 350 RLLQA 354 (357)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87753
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.95 E-value=1e-28 Score=265.61 Aligned_cols=167 Identities=15% Similarity=0.141 Sum_probs=114.0
Q ss_pred CCCCCCcEEEEEccccCCC-CcCCCCCCCCCCCCCCCCCcccCCcccccCceeEeeeecCCCCCcccccCCCcccceeec
Q 036374 98 PTVESDMIIGVLDNGIWPE-SDMFDDKSFGPPPKKWKGGACKGGQNFTCNNKIIGARYYSGINTTREYQLGHGTHMASIA 176 (706)
Q Consensus 98 ~~~G~GVvVgVIDtGid~~-Hp~f~~~~~~~~~~~~~g~~~~~g~~f~~n~k~ig~~~~~~~~~~~D~~~gHGThVAgi~ 176 (706)
..+|+||+|||||+|.++. |+||.. +. -..+... ++... .....+. .+||||+++++
T Consensus 21 ~~tG~gvtVaIid~G~~~~~~~Dl~~---------f~---~~~~~~~-~~~~~--------~~~~~~~-~~~~~~~~~~~ 78 (369)
T d1ga6a_ 21 APTAANTTVGIITIGGVSQTLQDLQQ---------FT---SANGLAS-VNTQT--------IQTGSSN-GDYSDDQQGQG 78 (369)
T ss_dssp SCCEEEEEEEEEEESBCHHHHHHHHH---------HH---HHTTCCC-CCEEE--------EECSCTT-SCCCBCHHHHH
T ss_pred CCCCCCcEEEEEecCCcccCHHHHHH---------HH---HhcCCCC-CCCCe--------ecCCCCC-CCCCCCCCcce
Confidence 4589999999999998764 667741 00 0000000 00000 0112233 68999999998
Q ss_pred ccccccCCCcccCCCcceeeccCCCeEEEEEeecCCCCCCHHHHHHHHHHHHH-CCCcEEEEcccCCCC---CCChhhHH
Q 036374 177 AGNLVVGASFDGLAKGNVRGAVPSARIAAYRVCHYPWPCNEADILAAFDDAIA-DGVDIILTGATYGFA---FDFAEDAV 252 (706)
Q Consensus 177 ag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~~g~~~~~i~~ai~~ai~-~gv~VIN~SlG~~~~---~~~~~~~~ 252 (706)
.+... ...+.||||+|+|+.++++.+.......+++++|++|++ .+++|||+|||.... .......+
T Consensus 79 e~~ld---------~~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~~~~~~~~ 149 (369)
T d1ga6a_ 79 EWDLD---------SQSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAE 149 (369)
T ss_dssp HHHHH---------HHHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHH
T ss_pred eeccc---------cccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeeccccccccCCCcchHHHHH
Confidence 76531 122389999999999999983334777899999999986 579999999997521 12334456
Q ss_pred HHHHHHHHhCCcEEEEecCCCCCCCC-------------CcccCCCceEEEccccC
Q 036374 253 AIGAFHAMEKGILTAVPTGNMGPKPA-------------STVVVAPWILTVAGSSI 295 (706)
Q Consensus 253 ~~a~~~a~~~Gv~vV~AAGN~G~~~~-------------~~~~~~p~vitVga~~~ 295 (706)
..++.++.++|++||+||||+|.... ..+...+++++|+++..
T Consensus 150 ~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~ 205 (369)
T d1ga6a_ 150 DRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 205 (369)
T ss_dssp HHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred HHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeecc
Confidence 67777888899999999999985431 12345688999988653
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.71 E-value=2.1e-08 Score=78.65 Aligned_cols=69 Identities=12% Similarity=0.103 Sum_probs=54.7
Q ss_pred CeEEEEEecCCCCCCCCchhHHHHHHHhccCcccCCccEEEEecceeeEEEEEcCHHHHHHHhcCCCeeEEEcccccc
Q 036374 1 MQVCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYERSFNGFAAKLTDEEQNRISRMDGIVSVFPSKTLQ 78 (706)
Q Consensus 1 ~~~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~~~V~~v~~~~~~~ 78 (706)
+++|||.|++... ..+...+.+.+ + ..+.+|.+.|+ .||||+++|+++++++|+++|+|.+|++|+.++
T Consensus 1 e~~YIV~fK~~~~-~~~~~~~~~~v-~------~~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~ 69 (71)
T d1scjb_ 1 EKKYIVGFKQTMS-AMSSAKKKDVI-S------QKGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAH 69 (71)
T ss_dssp CEEEEEEECSSSS-CCSHHHHHHHH-H------TTTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEE
T ss_pred CCcEEEEECCCCC-hHHHHHHHHHH-H------HcCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEE
Confidence 5799999999755 23333333332 2 24568999995 799999999999999999999999999998765
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.33 E-value=3.1e-07 Score=72.00 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=48.7
Q ss_pred eEEEEEecCCCCCCCCchhHHHHHHHhccCcccCCccEEEEec-ceeeEEEEEcCHHHHHHHhcCCC--eeEEEccc
Q 036374 2 QVCIVYMGSLPAGEYSPLAHHLSVLQEGIQDSLANDVLVRSYE-RSFNGFAAKLTDEEQNRISRMDG--IVSVFPSK 75 (706)
Q Consensus 2 ~~yiv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~-~~~ng~s~~~~~~~~~~L~~~~~--V~~v~~~~ 75 (706)
..|||.|++... ......+..++.+ ...++.+.|. ..||||+++++++.++.|+++|+ |.+|+++.
T Consensus 3 G~YIVvlK~~~~-~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~ 71 (72)
T d1v5ib1 3 GKFIVIFKNDVS-EDKIRETKDEVIA-------EGGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH 71 (72)
T ss_dssp EEEEEEECTTCC-HHHHHHHHHHHHH-------HTCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred ccEEEEECCCCC-HHHHHHHHHHHHh-------cCCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence 479999999654 2223333333322 2345778886 68999999999999999999665 99999986
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=95.86 E-value=0.054 Score=44.30 Aligned_cols=91 Identities=12% Similarity=0.068 Sum_probs=60.4
Q ss_pred CCCCeEEEEeecCCCceEEEEEEEEeccCCCee-EEEEEeecCcceEEEEEcCeEEEeeCCcEEEEEEEEEecccCCCce
Q 036374 599 LNLPSIAAQVEVHNPFSIKFLRTVTNVGLANTT-YKAEVKTTSIDVKINVTPDALSFESVNDKKSFVVTVDGAILQANHT 677 (706)
Q Consensus 599 lN~psi~~~~~~~~~~~~~~~rtv~n~g~~~~t-y~~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~ 677 (706)
+..|++++.- | ...+++.+|+|.|....+ -++.+.. |.|-+++ |....+ ++|++++++++|+++.....+.
T Consensus 6 ~t~p~~~v~p--G--~~~~~~vtVtN~g~~~~~~~~~~~~~-P~GW~v~--~~~~~L-~pG~s~~~~~~Vt~p~~a~~G~ 77 (103)
T d1w8oa1 6 FTIPDVALEP--G--QQVTVPVAVTNQSGIAVPKPSLQLDA-SPDWQVQ--GSVEPL-MPGRQAKGQVTITVPAGTTPGR 77 (103)
T ss_dssp EECCCEEECT--T--CEEEEEEEEECCSSSCBSSCEEEEEC-CTTSEEE--EEECCB-CTTCEEEEEEEEECCTTCCCEE
T ss_pred ccCcceeeCC--C--CeEEEEEEEEeCCCCceeeeeEEEcC-CCCcccc--Ccceee-CCCCcEEEEEEEECCCCCCCce
Confidence 4447776643 3 489999999999986543 4566777 9998775 445556 8999999999999876433333
Q ss_pred EEEEEEEEcCCceEEeeEEE
Q 036374 678 VSASLLWSDGTHNVRSPIVV 697 (706)
Q Consensus 678 ~~G~i~~~~~~~~v~~P~~~ 697 (706)
|.=.+..+++.......+-+
T Consensus 78 Y~i~~~a~~~~~~~s~t~tv 97 (103)
T d1w8oa1 78 YRVGATLRTSAGNASTTFTV 97 (103)
T ss_dssp EEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEEEEeCCcceEEEEEE
Confidence 44446666554444444433
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.96 E-value=0.062 Score=48.88 Aligned_cols=59 Identities=12% Similarity=0.143 Sum_probs=46.7
Q ss_pred CcccccEEEEee-----cccchheeecCceEEEecCC--CC----------------CCC--------------------
Q 036374 355 NLVKGKILLCDN-----FRGDVETFRVGALGSIQPAS--TI----------------MSH-------------------- 391 (706)
Q Consensus 355 ~~~~gkivl~~~-----~~k~~~~~~~Ga~g~i~~~~--~~----------------~~~-------------------- 391 (706)
.+++|||+|+++ .+|..+++..||.|+|+|.+ +. ..+
T Consensus 59 ~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~~~ 138 (193)
T d1de4c2 59 TPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSS 138 (193)
T ss_dssp SCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSCCCT
T ss_pred cccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCccccC
Confidence 578999999997 58999999999999999981 10 000
Q ss_pred -CcCccEEEechhhHHHHHHHHh
Q 036374 392 -PTPFPTVILKMEDFERVKLYIN 413 (706)
Q Consensus 392 -~~~~p~~~i~~~~~~~l~~~~~ 413 (706)
--.||+.-|+.+|++.|+..|+
T Consensus 139 ~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 139 GLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp TSCSSCEEECCHHHHHHHHTTBC
T ss_pred CCCcCCeeeCCHHHHHHHHHHcC
Confidence 0137899999999999988764
|