Citrus Sinensis ID: 036376

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
Protein Sequence
KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLENKHPFRSSKEEWVVCRVFQKSAAAVKKPQHTPSSQPSDESLCDTNSMVNEFGDIELPNLNGIANLTSGFGNIPSTQSYSSDNSNVNNMNMTNNMNLNMNWAAASLPSLTWPSSLLSPNLSMNSLLLKALQYRNYQAREATSNEHNSFLQQQGGINSRFESDLSSNFQASSSSKVILDSVVPQQTQQEQPFNLDSIW
Secondary Structure (PSIPRED)
ccccccccEEEEcccccccccccccccccccccccccccccccccccEEEEEEEEEEEEccccccccccccEEEEEEcccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEcccccccccccccccccccccEEEcccccEEEcccEEEEEEEEEEEEEccccccccccEEEEEEEEccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcHHHccccccccccccc
Coil and Loop (DISEMBL)
kasmgekeWYFFNlrdrkyptglrtnrateagywkttgkdkeiFRAGVLVGMKKTLVFykgrapkgeksnWVMHEYRLenkhpfrsskeEWVVCRVFQKsaaavkkpqhtpssqpsdeslcdtnsmvnefgdielpnlngianltsgfgnipstqsyssdnsnvnnmnmtnnMNLNMNWAAaslpsltwpssllspnlsmNSLLLKALQYRNYqareatsnehnsflqqqgginsrfesdlssnfqasssskvildsvvpqqtqqeqpfnldsiw
Flexible Loop (DISEMBL)
kasmgekewyffnlrdrkyptglrtnrateagywkttgkdkeifragVLVGMKKTLVfykgrapkgeksnwVMHEYRLEnkhpfrsskeeWVVCRVFQKSaaavkkpqhtpssqpsdesLCDTNSMVNEFGDIELPNLNGIANLTSGFGNIPSTQSYSSDNSNVNNMNMTNNMNLNMNWAAASLPSLTWPSSLLSPNLSMNSLLLKALQYRNYQAREATSNEHNSFLQQQGGINSRFESDLSSNFQASSSSKVILDSvvpqqtqqeqpfnldsiw
Low Complexity Region (SEG)
KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLENKHPFRSSKEEWVVCRVFQKSAAAVKKPQHTPSSQPSDESLCDTNSMVNEFGDIELPNLNGIANLTSGFGNIPSTQsyssdnsnvnnmnmtnnmnlnmnWAAAslpsltwpssllspnlsmnslllKALQYRNYQAREATSNEHNSFLQQQGGINSRFESDLSSNFQASSSSKVILDSVVPQQTQQEQPFNLDSIW
Disordered region (IsUnstruct)
*******EWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLENKHPFRSSKEEWVVCRVFQK***************************VNEFGDIELPNLNGIANLTSGF**************************LNMNWAAASLPSLTWPSSLLSPNLSMNSLLLKALQYRNY**************************************************************
Disordered Region (DISOPRED)
**SMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEN*****SSKEEWVVCRVFQ***************************************************************************************************************************************************************************NLDSIW
Disordered Region (DISEMBL)
KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLENKHPFRSSKEEWVVCRVFQKS********************CDTNSMVNEFGDIELPNLNGIANLTSGFGNIPSTQSYSSDNSNVNNMNMTNNMNLNMNWAAASLPSLTWPSSLLSPNLSMNSLLLKALQYRNYQAREATSNEHNSFLQQQGGINSRFESDLSSNFQASSSSKVILDSVVPQQTQQEQPFNLDSIW
Disordered Region (DISPRO)
****GEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLENKHPFRSSKEEWVVCRVFQKSA*********************************************GFGNIPSTQSYSSDNSNVNNMNMTNNMNLNMNWAAASLPSLTWPSSLLSPNLSMNSLLLKALQ*****************************************SKVILDSVVPQQTQQ**PFNLDSIW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLENKHPFRSSKEEWVVCRVFQKSAAAVKKPQHTPSSQPSDESLCDTNSMVNEFGDIELPNLNGIANLTSGFGNIPSTQSYSSDNSNVNNMNMTNNMNLNMNWAAASLPSLTWPSSLLSPNLSMNSLLLKALQYRNYQAREATSNEHNSFLQQQGGINSRFESDLSSNFQASSSSKVILDSVVPQQTQQEQPFNLDSIW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	275	2.2.26 [Sep-21-2011]
Q9FLJ2	336	NAC domain-containing pro	no	no	0.825	0.675	0.433	8e-46
O04017	375	Protein CUP-SHAPED COTYLE	no	no	0.374	0.274	0.770	5e-44
Q9S851	334	Protein CUP-SHAPED COTYLE	no	no	0.363	0.299	0.747	1e-41
Q9FRV4	310	Protein CUP-SHAPED COTYLE	no	no	0.385	0.341	0.687	4e-39
Q5CD17	396	NAC domain-containing pro	no	no	0.487	0.338	0.534	3e-37
Q84TE6	324	NAC domain-containing pro	no	no	0.374	0.317	0.611	2e-36
Q9FWX2	395	NAC domain-containing pro	no	no	0.367	0.255	0.613	4e-35
Q84K00	567	NAC domain-containing pro	no	no	0.356	0.172	0.59	4e-31
Q9SV87	341	Protein BEARSKIN1 OS=Arab	no	no	0.356	0.287	0.6	9e-31
Q84WP6	365	NAC domain-containing pro	no	no	0.341	0.257	0.541	3e-30

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score =  184 bits (466), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 114/263 (43%), Positives = 149/263 (56%), Gaps = 36/263 (13%)

Query: 2   ASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYKG 61
           A MGEKEWYFF +RDRKYPTGLRTNRATEAGYWK TGKDKEI+R   LVGMKKTLVFY+G
Sbjct: 65  AKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYRG 124

Query: 62  RAPKGEKSNWVMHEYRLENKHPF----RSSKEEWVVCRVFQKSAAAVKKPQHTPSSQPSD 117
           RAPKG+K+NWVMHEYRLE K       +++K EWV+CRVFQKSA   K P          
Sbjct: 125 RAPKGQKTNWVMHEYRLEGKFSAHNLPKTAKNEWVICRVFQKSAGGKKIPI--------- 175

Query: 118 ESLCDTNSMVNEFGDIELPNLNGIANLTSGFGNIPSTQS-YSSDNSNVNNMNMTNNMNL- 175
            SL    S+  +F    LP+L      +S + +   T+  Y    SN  + N    +N  
Sbjct: 176 SSLIRIGSLGTDFNPSLLPSLTD----SSPYNDKTKTEPVYVPCFSNQTDQNQGTTLNCF 231

Query: 176 ---NMNWAAASL---------PSLTWPSSLLSPNLSMNSLLLKALQYRNYQAREATSNEH 223
               +N   A +          SL    +L SP L+    +L A+   N +    T +  
Sbjct: 232 SSPVLNSIQADIFHRIPLYQTQSLQVSMNLQSPVLTQEHSVLHAMIENNRRQSLKTMS-- 289

Query: 224 NSFLQQQGGINSRFESDLSSNFQ 246
              + Q+ G+++   +D+SS+F+
Sbjct: 290 ---VSQETGVSTDMNTDISSDFE 309

Arabidopsis thaliana (taxid: 3702)

>sp|O04017|NAC98_ARATH Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1

 Score =  178 bits (451), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 84/109 (77%), Positives = 92/109 (84%), Gaps = 6/109 (5%)

Query: 1   KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIF--RAGVLVGMKKTLVF 58
           +A MGEKEWYFF+LRDRKYPTGLRTNRATEAGYWK TGKD+EIF  +   LVGMKKTLVF
Sbjct: 65  RAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVF 124

Query: 59  YKGRAPKGEKSNWVMHEYRLENKHPF----RSSKEEWVVCRVFQKSAAA 103
           YKGRAPKGEKSNWVMHEYRLE K  +    RSSK+EWV+ RVFQK+  A
Sbjct: 125 YKGRAPKGEKSNWVMHEYRLEGKFSYHFISRSSKDEWVISRVFQKTTLA 173

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S851|NAC31_ARATH Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=1 SV=1

 Score =  169 bits (429), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 77/103 (74%), Positives = 86/103 (83%), Gaps = 3/103 (2%)

Query: 2   ASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFR--AGVLVGMKKTLVFY 59
           A MGE+EWYF++LRDRKYPTGLRTNRAT AGYWK TGKDKE+F    G LVGMKKTLVFY
Sbjct: 71  AKMGEREWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVFY 130

Query: 60  KGRAPKGEKSNWVMHEYRLENKHPFR-SSKEEWVVCRVFQKSA 101
           KGRAP+G K+ WVMHEYRLEN H  R + KEEWV+CRVF K+ 
Sbjct: 131 KGRAPRGLKTKWVMHEYRLENDHSHRHTCKEEWVICRVFNKTG 173

Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRV4|NAC54_ARATH Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1

 Score =  161 bits (408), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 77/112 (68%), Positives = 88/112 (78%), Gaps = 6/112 (5%)

Query: 1   KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEI--FRAGVLVGMKKTLVF 58
           KA MGEKEWYFF LRDRKYPTGLRTNRATEAGYWK TGKD+EI   +   L+GMKKTLVF
Sbjct: 68  KAKMGEKEWYFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVF 127

Query: 59  YKGRAPKGEKSNWVMHEYRLENKHPFR----SSKEEWVVCRVFQKSAAAVKK 106
           YKGRAPKGEKS WVMHEYRL+ K  +     S+K+EWV+C+V  KS    ++
Sbjct: 128 YKGRAPKGEKSCWVMHEYRLDGKFSYHYISSSAKDEWVLCKVCLKSGVVSRE 179

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5CD17|NAC77_ORYSJ NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2

 Score =  155 bits (392), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/161 (53%), Positives = 101/161 (62%), Gaps = 27/161 (16%)

Query: 1   KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFR--AGV---------- 48
           KA MGEKEWYFF+ +D KYPTG+RTNRAT+ GYWK TGKD+EIFR  A V          
Sbjct: 67  KAKMGEKEWYFFSHKDMKYPTGMRTNRATKEGYWKATGKDREIFRQPAAVNTSSYGGSSN 126

Query: 49  ----LVGMKKTLVFYKGRAPKGEKSNWVMHEYR----LENKHP-FR-SSKEEWVVCRVFQ 98
               LVGMKKTLVFY GRAPKG K+NWVMHE+R    L N HP  R + K+EWVVC+VF 
Sbjct: 127 KKKQLVGMKKTLVFYMGRAPKGTKTNWVMHEFRLHANLHNHHPNLRLNPKDEWVVCKVFH 186

Query: 99  KSAA--AVKKPQHTPSSQPSDESLCDT---NSMVNEFGDIE 134
           K     A+   Q  P     D+   +T    S V + GDI+
Sbjct: 187 KKQGDEAINNQQQQPQYAAVDQYSAETPNSGSSVVQAGDID 227

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84TE6|NAC22_ARATH NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2

 Score =  152 bits (384), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 66/108 (61%), Positives = 81/108 (75%), Gaps = 5/108 (4%)

Query: 2   ASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYKG 61
           A +G K+WYF++ RDRKY TGLRTNRAT  GYWK TGKD+ I R G LVGM+KTLVFY+G
Sbjct: 69  ACVGGKDWYFYSQRDRKYATGLRTNRATATGYWKATGKDRTILRKGKLVGMRKTLVFYQG 128

Query: 62  RAPKGEKSNWVMHEYRLENK-----HPFRSSKEEWVVCRVFQKSAAAV 104
           RAP+G K++WVMHE+RL+       H   S KE+WV+CRVF K+   V
Sbjct: 129 RAPRGRKTDWVMHEFRLQGSHHPPNHSLSSPKEDWVLCRVFHKNTEGV 176

Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score =  148 bits (374), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 62/101 (61%), Positives = 80/101 (79%)

Query: 6   EKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPK 65
           + +WYFF+ +D+KYPTG RTNRAT+AG+WK TG+DK I+    L+GM+KTLVFYKGRAP 
Sbjct: 63  QSDWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVFYKGRAPN 122

Query: 66  GEKSNWVMHEYRLENKHPFRSSKEEWVVCRVFQKSAAAVKK 106
           G+KS+W+MHEYRLE        +E WVVCRVF+K  AAV++
Sbjct: 123 GQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRLAAVRR 163

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84K00|NAC78_ARATH NAC domain-containing protein 78 OS=Arabidopsis thaliana GN=NAC078 PE=2 SV=2

 Score =  135 bits (339), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 59/100 (59%), Positives = 78/100 (78%), Gaps = 2/100 (2%)

Query: 8   EWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPKGE 67
           EWYFF++ D+KY  G +TNRATE GYWKTTGKD+EI     +VGMKKTLV++KGRAP+GE
Sbjct: 66  EWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREIRNGSRVVGMKKTLVYHKGRAPRGE 125

Query: 68  KSNWVMHEYRLENKHPFRSS--KEEWVVCRVFQKSAAAVK 105
           ++NWVMHEYRL ++   ++   +E +V+CR+FQKS    K
Sbjct: 126 RTNWVMHEYRLSDEDLKKAGVPQEAYVLCRIFQKSGTGPK 165

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV87|BRN2_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1

 Score =  134 bits (336), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 77/100 (77%), Gaps = 2/100 (2%)

Query: 2   ASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYKG 61
            S  + EWYFF+ +DRKYPTG RTNRAT AG+WK TG+DK I  +   +GM+KTLVFYKG
Sbjct: 61  GSTPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKKIGMRKTLVFYKG 120

Query: 62  RAPKGEKSNWVMHEYRLENKHPFRS--SKEEWVVCRVFQK 99
           RAP G+K++W+MHEYRLE+    ++  S++ WVVCRVF K
Sbjct: 121 RAPHGQKTDWIMHEYRLEDADDPQANPSEDGWVVCRVFMK 160

Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WP6|NAC43_ARATH NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2

 Score =  132 bits (331), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 59/109 (54%), Positives = 76/109 (69%), Gaps = 15/109 (13%)

Query: 6   EKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPK 65
           + +WYFF+ +D+KYPTG RTNRAT AG+WK TG+DK I+  G  +GM+KTLVFYKGRAP 
Sbjct: 72  QNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYSNGRRIGMRKTLVFYKGRAPH 131

Query: 66  GEKSNWVMHEYRLENK---------HPF------RSSKEEWVVCRVFQK 99
           G+KS+W+MHEYRL++          H         S  E WVVCR+F+K
Sbjct: 132 GQKSDWIMHEYRLDDNIISPEDVTVHEVVSIIGEASQDEGWVVCRIFKK 180

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulates the secondary cell wall lignification of other tissues.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
224133072	321	NAC domain protein, IPR003441 [Populus t	0.945	0.809	0.741	1e-106
356522759	349	PREDICTED: NAC domain-containing protein	0.956	0.753	0.676	1e-94
357500383	325	NAC domain protein [Medicago truncatula]	0.956	0.809	0.666	2e-93
224121304	365	NAC domain protein, IPR003441 [Populus t	0.905	0.682	0.684	2e-91
255582751	333	transcription factor, putative [Ricinus	0.978	0.807	0.714	8e-89
356531206	331	PREDICTED: protein CUP-SHAPED COTYLEDON	0.963	0.800	0.650	6e-88
359491444	539	PREDICTED: uncharacterized protein LOC10	0.970	0.495	0.721	9e-86
297734208	327	unnamed protein product [Vitis vinifera]	0.970	0.816	0.721	2e-85
388508240	326	unknown [Lotus japonicus]	0.974	0.822	0.679	3e-84
356527817	313	PREDICTED: protein CUP-SHAPED COTYLEDON	0.92	0.808	0.593	1e-76

>gi|224133072|ref|XP_002321475.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222868471|gb|EEF05602.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/282 (74%), Positives = 232/282 (82%), Gaps = 22/282 (7%)

Query: 1   KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
           KASMGEKEWYFF+LRDRKYPTGLRTNRATEAGYWKTTGKD+EIFRAGVLVGMKKTLVFYK
Sbjct: 55  KASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDREIFRAGVLVGMKKTLVFYK 114

Query: 61  GRAPKGEKSNWVMHEYRLENKHPFRSSKEEWVVCRVFQKSAAAVKKPQHTPSSQPSDESL 120
           GRAP+GEKSNWVMHEYRLEN+HPF+S+KEEWVVCR+FQKS  AVKKPQ  PSSQ S  SL
Sbjct: 115 GRAPRGEKSNWVMHEYRLENRHPFKSTKEEWVVCRIFQKS-TAVKKPQQEPSSQQSLGSL 173

Query: 121 CDTNSMVNE-FGDIELPNLNGIANLTSGFGNIPSTQSYSSDNSNVNNMNMTNNMNLNMNW 179
           CDTNS+VN+ +GDIELPNLN IAN +SGF NI S  +Y+++ SNV       NMNLNMNW
Sbjct: 174 CDTNSIVNDQYGDIELPNLNRIANSSSGFSNI-SAHTYNNE-SNV-------NMNLNMNW 224

Query: 180 AAA------SLPSLTWPSSLLSPNLSMNSLLLKALQYRNYQAREATSNEHNSFLQQQGGI 233
           AAA      +LPSL+WP  LLS NL+ NSLLLKALQ R+YQ REAT+ ++ SFL   G I
Sbjct: 225 AAAREAAHTTLPSLSWPPGLLSSNLTTNSLLLKALQLRSYQQREATTTDY-SFL-TNGNI 282

Query: 234 NSRFESDLSSNFQASSSSKVILDSVVPQQTQQEQPFNLDSIW 275
              F +DL SNFQASSSSKV LDSV   Q QQEQPFNLDSIW
Sbjct: 283 VHEFGTDLGSNFQASSSSKV-LDSV--PQPQQEQPFNLDSIW 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356522759|ref|XP_003530013.1| PREDICTED: NAC domain-containing protein 100-like [Glycine max]

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 192/284 (67%), Positives = 218/284 (76%), Gaps = 21/284 (7%)

Query: 1   KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
           KASMG+KEWYFF+LRDRKYPTGLRTNRATE+GYWKTTGKDKEIFRAGVLVGMKKTLVFY+
Sbjct: 78  KASMGKKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFRAGVLVGMKKTLVFYR 137

Query: 61  GRAPKGEKSNWVMHEYRLENKHPFRSSKEEWVVCRVFQKSAAAVKKPQHTPSSQPSDESL 120
           GRAP+GEKSNWVMHEYRLENKH F  SK+EWVVCRVFQKS   VK+PQ TPSSQP  ES 
Sbjct: 138 GRAPRGEKSNWVMHEYRLENKHHFGPSKDEWVVCRVFQKS-LQVKRPQQTPSSQP--ESP 194

Query: 121 CDTNSMVNEFGDIELPNL-NGIANLTSGF-GNIPSTQSYSSDNSNVNNMNMTNNMNLNMN 178
           CDT SMVNEFGD+ELPNL N IAN + G   NI     +++D   +N++N   NMNL MN
Sbjct: 195 CDTASMVNEFGDVELPNLINNIANSSGGLTNNISGQTCFNAD--LINSVN--TNMNLAMN 250

Query: 179 WAAAS-------LPSLTWPSSLLSPNLSMNSLLLKALQYRNYQAREATSNEHNSFLQQQG 231
           W  AS       LPSL WPS LL+P++S+NSLLLKALQ R+YQ REA ++   +    QG
Sbjct: 251 WPVASEVIQVPTLPSLPWPSGLLNPSISVNSLLLKALQLRSYQQREAATDHLIASYVPQG 310

Query: 232 GINSRFESDLSSNFQASSSSKVILDSVVPQQTQQEQPFNLDSIW 275
              S   +DLSSN  A SSSKV+    +PQQ Q EQPFNLDSIW
Sbjct: 311 --VSHVGTDLSSNLTA-SSSKVL--ECMPQQQQLEQPFNLDSIW 349

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357500383|ref|XP_003620480.1| NAC domain protein [Medicago truncatula] gi|355495495|gb|AES76698.1| NAC domain protein [Medicago truncatula]

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 190/285 (66%), Positives = 225/285 (78%), Gaps = 22/285 (7%)

Query: 1   KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
           KASMGEKEWYFF++RDRKYPTGLRTNRATE+GYWKTTGKDKEIFR GVLVGMKKTLVFYK
Sbjct: 53  KASMGEKEWYFFSVRDRKYPTGLRTNRATESGYWKTTGKDKEIFRGGVLVGMKKTLVFYK 112

Query: 61  GRAPKGEKSNWVMHEYRLENKHPFRSSKEEWVVCRVFQKSAAAVKKPQHTPSSQPSDESL 120
           GRAP+GEKSNWVMHEYRLENKH FR+SK+EWVVCRVFQKS A  KKPQ T  SQP  ES 
Sbjct: 113 GRAPRGEKSNWVMHEYRLENKHHFRTSKDEWVVCRVFQKSIAT-KKPQQTSFSQP--ESP 169

Query: 121 CDTNSMVNEFGDIELPNLNGIANLTS--GFGNIPSTQSYSSDNSNVNNMNMTNNMNLNMN 178
           CDT S+VNEFGD+ELPNLNGI N +S  GF NI   Q++++ +      ++  NMNL MN
Sbjct: 170 CDTTSIVNEFGDVELPNLNGITNSSSSCGFTNIIQGQTFNTHD------DLNTNMNLTMN 223

Query: 179 WAAAS-LPSLTWPSSLLSP-NLSMNSLLLKALQYRNYQARE--ATSNEHNS-FLQQQGGI 233
           W ++S +PSL WPS+LL+P N+S+NSLLLKALQ RNYQ +   A +N H + ++ QQG I
Sbjct: 224 WPSSSHVPSLPWPSNLLNPNNISVNSLLLKALQLRNYQQQREVAATNIHFAPYMPQQGVI 283

Query: 234 -NSRFESDLS--SNFQASSSSKVILDSVVPQQTQQEQPFNLDSIW 275
            + +  +D S  SN  ++SSSKV+    +PQ  QQEQPFNLDSIW
Sbjct: 284 SHHQLGTDPSNNSNDLSASSSKVL--ECMPQH-QQEQPFNLDSIW 325

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121304|ref|XP_002318549.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222859222|gb|EEE96769.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 191/279 (68%), Positives = 217/279 (77%), Gaps = 30/279 (10%)

Query: 1   KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
           KASMGEKEWYFF+LRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFY+
Sbjct: 53  KASMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYR 112

Query: 61  GRAPKGEKSNWVMHEYRLENKHPFRSSKEEWVVCRVFQKSAAAVKKPQHTPSSQPSDESL 120
           GRAP+GEKSNWVMHEYRL++KHPF+S+KEEWVVCRVFQKS   VKKPQ  PSSQ S  S 
Sbjct: 113 GRAPRGEKSNWVMHEYRLDDKHPFKSTKEEWVVCRVFQKS-TEVKKPQQEPSSQQSLGSP 171

Query: 121 CDTNSMVNE-FGDIELPNLNGIANLTSGFGNIPSTQSYSSDNSNVNNMNMTNNMNLNMNW 179
           CDTNS+VN+ FGD        IAN +SGF NI +  SY+++ SNV       N++ +MNW
Sbjct: 172 CDTNSIVNDKFGD--------IANSSSGFNNILA-HSYNNE-SNV-------NVDSHMNW 214

Query: 180 A----AASLPSLTWPSSLLSPNLSMNSLLLKALQYRNYQAREATSNEHNSFLQQQGGINS 235
           A    AA+LPSL WPS LLS NL+MNSLLLKALQ R+YQ REAT+  + SFL    GI  
Sbjct: 215 AAAREAATLPSLAWPSGLLSTNLTMNSLLLKALQLRSYQQREATTTNY-SFL--TNGIPH 271

Query: 236 RFESDLSSNFQASSSSKVILDSVVPQQTQQEQPFNLDSI 274
            + + L SNFQASSS   +LDS    Q QQEQPF+LDSI
Sbjct: 272 EYGAALGSNFQASSSK--VLDSA--PQPQQEQPFSLDSI 306

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582751|ref|XP_002532152.1| transcription factor, putative [Ricinus communis] gi|223528162|gb|EEF30226.1| transcription factor, putative [Ricinus communis]

 Score =  332 bits (852), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 205/287 (71%), Positives = 229/287 (79%), Gaps = 18/287 (6%)

Query: 1   KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
           KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAG+LVGMKKTLVFYK
Sbjct: 53  KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGILVGMKKTLVFYK 112

Query: 61  GRAPKGEKSNWVMHEYRLENKHPFRSSKEEWVVCRVFQKSAAAVKKPQHTPSSQPSDESL 120
           GRAP+GEKSNWVMHEYRLENKH F+ +KEEWVVCRVFQKS++A KKPQ   SSQ S  S 
Sbjct: 113 GRAPRGEKSNWVMHEYRLENKHLFKPTKEEWVVCRVFQKSSSAAKKPQQASSSQQSLGSP 172

Query: 121 CDTNSMVNEFGDIELPNLNGIAN-LTSGFGNIPSTQSYSSDNSNVNNMNMTNNMNLNMNW 179
           CDTNS+VNEFGDIELPNLN   N  +SGF N+ S QSY+++N+         N NLN+NW
Sbjct: 173 CDTNSVVNEFGDIELPNLNSFVNSSSSGFNNM-SAQSYNNENN---VNMNMINTNLNVNW 228

Query: 180 --------AAASLPSLTWPSSLLSPNLSMNSLLLKALQYRNYQARE--ATSNEHNSFLQQ 229
                   AAA+LPSL+WPSSLL+ +L+MNSL+LKALQ R+YQ RE  A SN   SFL Q
Sbjct: 229 AATREAVVAAATLPSLSWPSSLLTSDLTMNSLILKALQLRSYQQREAAAASNNDYSFLAQ 288

Query: 230 QGGINSRFES-DLSSNFQASSSSKVILDSVVPQQTQQEQPFNLDSIW 275
             GI  +F S DLSSNFQASSSS   L+S+  QQ QQEQPFNLDSIW
Sbjct: 289 --GIMPQFGSTDLSSNFQASSSSSKGLESLPQQQQQQEQPFNLDSIW 333

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531206|ref|XP_003534169.1| PREDICTED: protein CUP-SHAPED COTYLEDON 1-like [Glycine max]

 Score =  330 bits (845), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 188/289 (65%), Positives = 222/289 (76%), Gaps = 24/289 (8%)

Query: 1   KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
           KASMG+KEWYFF+LRDRKYPTGLRTNRATE+GYWKTTGKDKEIFRAGVLVGMKKTLVFY+
Sbjct: 53  KASMGKKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKEIFRAGVLVGMKKTLVFYR 112

Query: 61  GRAPKGEKSNWVMHEYRLENKHPFRSSKEEWVVCRVFQKSAAAVKKPQHTPSSQPSDESL 120
           GRAP+GEKSNWVMHEYRLENK+ FR SK+EWVVCRVFQKS   +K+PQ TP SQP  ES 
Sbjct: 113 GRAPRGEKSNWVMHEYRLENKNHFRPSKDEWVVCRVFQKS-LQMKRPQQTPPSQP--ESP 169

Query: 121 CDTNSMVNEFGDIELPNL-NGIANLTS-GFGNIPSTQSYSSDNSNVNNMNMTNNMNLNMN 178
           CDT SMVNEFGD+ELPNL N IAN +S G  N  S Q++ + +  +N++N   NMNL MN
Sbjct: 170 CDTASMVNEFGDVELPNLINNIANSSSDGITNNISGQTFFNADL-INSVN--TNMNLTMN 226

Query: 179 WAAAS-------LPSLTWPSSLLSPNLSMNSLLLKALQYRNYQARE-----ATSNEHNSF 226
           W  AS       LPSL WPS LL+P++S+NSLLLKALQ R+YQ  E     AT +   S+
Sbjct: 227 WPVASEVIQVPTLPSLPWPSGLLNPSISVNSLLLKALQLRSYQQIEAAAAAATDHLIASY 286

Query: 227 LQQQGGINSRFESDLSSNFQASSSSKVILDSVVPQQTQQEQPFNLDSIW 275
           + Q  G++    ++L S+   +SSS  +L+  VPQQ QQEQPFNLDSIW
Sbjct: 287 MPQ--GVSQHVGTNLISSSLTASSSSKVLE-CVPQQ-QQEQPFNLDSIW 331

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491444|ref|XP_002276293.2| PREDICTED: uncharacterized protein LOC100266459 [Vitis vinifera]

 Score =  322 bits (826), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 202/280 (72%), Positives = 225/280 (80%), Gaps = 13/280 (4%)

Query: 1   KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
           KASMGEKEWYFF+LRDRKYPTG+RTNRATEAGYWKTTGKDKEI+RAG+LVGMKKTLVFYK
Sbjct: 64  KASMGEKEWYFFSLRDRKYPTGIRTNRATEAGYWKTTGKDKEIYRAGILVGMKKTLVFYK 123

Query: 61  GRAPKGEKSNWVMHEYRLENKHPFRSSKEEWVVCRVFQKSAAAVKKPQHTPSSQPSDESL 120
           GRAPKGEKSNWVMHEYRLE K  F+  KEEWVVCRVF+KS+A  K  Q  PSS PS ES 
Sbjct: 124 GRAPKGEKSNWVMHEYRLETKLSFKPKKEEWVVCRVFKKSSAVKKPHQPAPSSLPSLESP 183

Query: 121 CDTNSMVNEFGDIELPNLNGIANLTSGFGNIPSTQSYSSDNSNVNNMNMTNNMNLNMNWA 180
           CDTN++V+EFGDIE PN+N IAN +SGF NI S QSY  + S  +N+NM  NMN+NMNWA
Sbjct: 184 CDTNTIVSEFGDIEFPNMNSIANSSSGFSNINSAQSY--NTSTDDNLNMNMNMNMNMNWA 241

Query: 181 ----AASLPSLTWPSSLLSPNLSMNSLLLKALQYRNYQAREATSNEHNSFLQQQGGINSR 236
               AASLPSL W SSLLSPNL MNSLL+KALQ  +Y+ REATS E+ SFL Q  GI S 
Sbjct: 242 AAREAASLPSLPWSSSLLSPNLQMNSLLIKALQLGSYRPREATSTENYSFLPQ--GI-SN 298

Query: 237 FESDLSSNFQASSSSKVILDSV--VPQQTQQEQPFNLDSI 274
           F +D  SNFQASSS   +LDS+    QQ QQEQPFNLDSI
Sbjct: 299 FGTDFISNFQASSSK--VLDSLHQQQQQQQQEQPFNLDSI 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734208|emb|CBI15455.3| unnamed protein product [Vitis vinifera]

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 202/280 (72%), Positives = 226/280 (80%), Gaps = 13/280 (4%)

Query: 1   KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
           KASMGEKEWYFF+LRDRKYPTG+RTNRATEAGYWKTTGKDKEI+RAG+LVGMKKTLVFYK
Sbjct: 53  KASMGEKEWYFFSLRDRKYPTGIRTNRATEAGYWKTTGKDKEIYRAGILVGMKKTLVFYK 112

Query: 61  GRAPKGEKSNWVMHEYRLENKHPFRSSKEEWVVCRVFQKSAAAVKKPQHTPSSQPSDESL 120
           GRAPKGEKSNWVMHEYRLE K  F+  KEEWVVCRVF+KS+A  K  Q  PSS PS ES 
Sbjct: 113 GRAPKGEKSNWVMHEYRLETKLSFKPKKEEWVVCRVFKKSSAVKKPHQPAPSSLPSLESP 172

Query: 121 CDTNSMVNEFGDIELPNLNGIANLTSGFGNIPSTQSYSSDNSNVNNMNMTNNMNLNMNWA 180
           CDTN++V+EFGDIE PN+N IAN +SGF NI S QSY++  S  +N+NM  NMN+NMNWA
Sbjct: 173 CDTNTIVSEFGDIEFPNMNSIANSSSGFSNINSAQSYNT--STDDNLNMNMNMNMNMNWA 230

Query: 181 ----AASLPSLTWPSSLLSPNLSMNSLLLKALQYRNYQAREATSNEHNSFLQQQGGINSR 236
               AASLPSL W SSLLSPNL MNSLL+KALQ  +Y+ REATS E+ SFL Q  GI S 
Sbjct: 231 AAREAASLPSLPWSSSLLSPNLQMNSLLIKALQLGSYRPREATSTENYSFLPQ--GI-SN 287

Query: 237 FESDLSSNFQASSSSKVILDSV--VPQQTQQEQPFNLDSI 274
           F +D  SNFQASSS   +LDS+    QQ QQEQPFNLDSI
Sbjct: 288 FGTDFISNFQASSSK--VLDSLHQQQQQQQQEQPFNLDSI 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508240|gb|AFK42186.1| unknown [Lotus japonicus]

 Score =  317 bits (813), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 191/281 (67%), Positives = 225/281 (80%), Gaps = 13/281 (4%)

Query: 1   KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
           KASMGEKEWYFF+LRDRKYP GLRTNRATE+GYWKTTGKDKEIFRAGVLVGMKKTLVFYK
Sbjct: 53  KASMGEKEWYFFSLRDRKYPIGLRTNRATESGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 112

Query: 61  GRAPKGEKSNWVMHEYRLENKHPFRSSKEEWVVCRVFQKSAAAVKKPQHTPSSQPSDESL 120
           GRAP+GEKSNWVMHEYRLENKH FR+SK+EWVVCRVFQK+ AA KK Q T SSQP  ES 
Sbjct: 113 GRAPRGEKSNWVMHEYRLENKHHFRTSKDEWVVCRVFQKTTAA-KKLQQTSSSQP--ESP 169

Query: 121 CDTNSMVNEFGDIELPNLNGIANLTS-GFGNIPSTQSYSSDNSNVNNMNMTNNMNLNMNW 179
           CDT SMVNEFGD+ELPNLN IA+ +  G  NI S Q+++ D   ++N N+  NMNL MNW
Sbjct: 170 CDTTSMVNEFGDVELPNLNNIASSSGHGLTNINSAQTFNYD--LMSNNNVNTNMNLTMNW 227

Query: 180 AAAS-LPSLTWPSSLLSPNL-SMNSLLLKALQYRNY-QAREATSNEH--NSFLQQQGGIN 234
             A+ + SL WPS LL+PN+ S+NSLLLKALQ+R+Y Q +EA + EH   S++  Q G++
Sbjct: 228 PPATGVSSLPWPSGLLNPNINSVNSLLLKALQFRSYNQQKEAAAAEHFATSYMMPQ-GVS 286

Query: 235 SRFESDLSSNFQASSSSKVILDSVVPQQTQQEQPFNLDSIW 275
               +DLSSN  ++SSS+V L+ +  QQ QQEQPFN DSIW
Sbjct: 287 HHLGTDLSSNNLSASSSRV-LECMPQQQHQQEQPFNSDSIW 326

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527817|ref|XP_003532503.1| PREDICTED: protein CUP-SHAPED COTYLEDON 1-like [Glycine max]

 Score =  291 bits (746), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 168/283 (59%), Positives = 200/283 (70%), Gaps = 30/283 (10%)

Query: 1   KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
           KASMGEKEWYFF+L+DRKYPTGLRTNRATE+GYWKTTGKDKEIF  GVL+GMKKTLVFY 
Sbjct: 53  KASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIFGGGVLIGMKKTLVFYM 112

Query: 61  GRAPKGEKSNWVMHEYRLENKHPFRSSKEEWVVCRVFQKSAAAVKKPQHTPSSQPSDESL 120
           GRAP+GEKSNWVMHEYRL NK P+RSSKEE V+CRVFQKS+A    P+    +  S  S 
Sbjct: 113 GRAPRGEKSNWVMHEYRLANKQPYRSSKEERVICRVFQKSSA----PKKPQQTSSSQPSQ 168

Query: 121 CDTNSMVNEFGDIELPNLNGIANLTSGFGNIPSTQSYSSDNSNVNNMNMTNNMNLNMNWA 180
               SMVNEFGD++LPNLN IAN +S F N     +Y+ +    N +N   NMNL MN  
Sbjct: 169 ESPTSMVNEFGDVDLPNLNSIANSSSSFTN---NIAYNINGDPSNAVN--TNMNLTMN-- 221

Query: 181 AASLPSLTWPSSLLSPNLSMNSLLLKALQYRN-YQARE-ATSNEHN--SFLQQQGGINSR 236
                   WPS  L+PNLS+NSLLLKA Q RN YQ RE ATS++H+  +++ Q    N+ 
Sbjct: 222 --------WPSGFLNPNLSVNSLLLKASQLRNTYQQREAATSSDHHFATYVPQGFSHNNT 273

Query: 237 FESD---LSSNFQA-SSSSKVILDSVVPQQTQQEQPFNLDSIW 275
             ++   ++ N  A SSSSK +  S VP   QQEQPFN+DSIW
Sbjct: 274 IGTEHHLMTPNLSATSSSSKALEYSCVP---QQEQPFNMDSIW 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	275
TAIR|locus:2095007	314	NAC058 "NAC domain containing	0.541	0.474	0.766	5.4e-63
TAIR|locus:2163153	336	NAC100 "NAC domain containing	0.385	0.315	0.754	1.1e-44
TAIR|locus:2160324	329	NAC080 "NAC domain containing	0.4	0.334	0.710	4.1e-43
TAIR|locus:2164895	285	NAC6 "NAC domain containing pr	0.389	0.375	0.747	8.4e-42
TAIR|locus:2154684	375	CUC2 "CUP-SHAPED COTYLEDON 2"	0.374	0.274	0.770	1.4e-41
TAIR|locus:2061082	316	NAC038 "NAC domain containing	0.418	0.363	0.705	2e-40
TAIR|locus:2011736	334	CUC3 "CUP SHAPED COTYLEDON3" [	0.36	0.296	0.754	1.8e-39
TAIR|locus:2172334	335	ANAC087 "Arabidopsis NAC domai	0.363	0.298	0.733	2.3e-39
TAIR|locus:2087037	318	NAC3 "NAC domain containing pr	0.527	0.455	0.538	8.3e-39
TAIR|locus:2095958	338	NAC046 "NAC domain containing	0.363	0.295	0.723	3.4e-38

TAIR|locus:2095007 NAC058 "NAC domain containing protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
 Identities = 118/154 (76%), Positives = 129/154 (83%)

Query:     1 KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
             KASMGEKEWYFF+ RDRKYPTGLRTNRATEAGYWKTTGKDKEI+R+GVLVGMKKTLVFYK
Sbjct:    53 KASMGEKEWYFFSQRDRKYPTGLRTNRATEAGYWKTTGKDKEIYRSGVLVGMKKTLVFYK 112

Query:    61 GRAPKGEKSNWVMHEYRLENKHPFR-SSKEEWVVCRVFQKSAAAVKKPQHTP-SSQPSDE 118
             GRAPKGEKSNWVMHEYRLE+K PF  ++KEEWVVCRVF+KS AA K  +  P SSQPS  
Sbjct:   113 GRAPKGEKSNWVMHEYRLESKQPFNPTNKEEWVVCRVFEKSTAAKKAQEQQPQSSQPSFG 172

Query:   119 SLCDTNS-MVNEFGDI-ELPNLNGIANLTSGFGN 150
             S CD NS M NEF DI ELPNLN  ++ T  + N
Sbjct:   173 SPCDANSSMANEFEDIDELPNLNSNSS-TIDYNN 205

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2163153 NAC100 "NAC domain containing protein 100" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
 Identities = 83/110 (75%), Positives = 92/110 (83%)

Query:     2 ASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYKG 61
             A MGEKEWYFF +RDRKYPTGLRTNRATEAGYWK TGKDKEI+R   LVGMKKTLVFY+G
Sbjct:    65 AKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYRG 124

Query:    62 RAPKGEKSNWVMHEYRLENK---HPF-RSSKEEWVVCRVFQKSAAAVKKP 107
             RAPKG+K+NWVMHEYRLE K   H   +++K EWV+CRVFQKSA   K P
Sbjct:   125 RAPKGQKTNWVMHEYRLEGKFSAHNLPKTAKNEWVICRVFQKSAGGKKIP 174

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2160324 NAC080 "NAC domain containing protein 80" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
 Identities = 81/114 (71%), Positives = 93/114 (81%)

Query:     1 KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
             KA +GEKEWYFF +RDRKYPTGLRTNRAT+AGYWK TGKDKEIFR   LVGMKKTLVFY+
Sbjct:    65 KAKIGEKEWYFFCVRDRKYPTGLRTNRATQAGYWKATGKDKEIFRGKSLVGMKKTLVFYR 124

Query:    61 GRAPKGEKSNWVMHEYRLENK---HPF-RSSKEEWVVCRVFQKSAAAVKKPQHT 110
             GRAPKG+K+NWVMHEYRL+ K   H   +++K EWV+CRVF K+A   K P  T
Sbjct:   125 GRAPKGQKTNWVMHEYRLDGKLSAHNLPKTAKNEWVICRVFHKTAGGKKIPIST 178

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2164895 NAC6 "NAC domain containing protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 83/111 (74%), Positives = 91/111 (81%)

Query:     1 KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
             KA MGEKEWYFF +RDRKYPTGLRTNRATEAGYWK TGKDKEIF+   LVGMKKTLVFYK
Sbjct:    68 KAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVFYK 127

Query:    61 GRAPKGEKSNWVMHEYRLENKHPF----RSSKEEWVVCRVFQKSAAAVKKP 107
             GRAPKG K+NWVMHEYRLE K+      +++K EWV+CRVFQK A   K P
Sbjct:   128 GRAPKGVKTNWVMHEYRLEGKYCIENLPQTAKNEWVICRVFQKRADGTKVP 178

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IPI

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010150 "leaf senescence" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0000303 "response to superoxide" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2154684 CUC2 "CUP-SHAPED COTYLEDON 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 84/109 (77%), Positives = 92/109 (84%)

Query:     1 KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIF--RAGVLVGMKKTLVF 58
             +A MGEKEWYFF+LRDRKYPTGLRTNRATEAGYWK TGKD+EIF  +   LVGMKKTLVF
Sbjct:    65 RAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVF 124

Query:    59 YKGRAPKGEKSNWVMHEYRLENKHPF----RSSKEEWVVCRVFQKSAAA 103
             YKGRAPKGEKSNWVMHEYRLE K  +    RSSK+EWV+ RVFQK+  A
Sbjct:   125 YKGRAPKGEKSNWVMHEYRLEGKFSYHFISRSSKDEWVISRVFQKTTLA 173

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0048366 "leaf development" evidence=IMP

GO:0048504 "regulation of timing of organ formation" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010160 "formation of organ boundary" evidence=IGI

TAIR|locus:2061082 NAC038 "NAC domain containing protein 38" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 84/119 (70%), Positives = 96/119 (80%)

Query:     1 KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGV--LVGMKKTLVF 58
             KA MG KEWYFF+LRDRKYPTG+RTNRAT  GYWKTTGKDKEIF +    LVGMKKTLVF
Sbjct:    64 KAKMGGKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNSTTSELVGMKKTLVF 123

Query:    59 YKGRAPKGEKSNWVMHEYRLENKHPFRSSKE-EWVVCRVFQKSAAAVKKPQHTPSSQPS 116
             Y+GRAP+GEK+ WVMHEYRL +K  +R+SK+ EWVVCRVF+K+ A  KK   T SS  S
Sbjct:   124 YRGRAPRGEKTCWVMHEYRLHSKSSYRTSKQDEWVVCRVFKKTEAT-KKYISTSSSSTS 181

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2011736 CUC3 "CUP SHAPED COTYLEDON3" [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.8e-39, P = 1.8e-39
 Identities = 77/102 (75%), Positives = 86/102 (84%)

Query:     2 ASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAG--VLVGMKKTLVFY 59
             A MGE+EWYF++LRDRKYPTGLRTNRAT AGYWK TGKDKE+F  G   LVGMKKTLVFY
Sbjct:    71 AKMGEREWYFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVFY 130

Query:    60 KGRAPKGEKSNWVMHEYRLENKHPFRSS-KEEWVVCRVFQKS 100
             KGRAP+G K+ WVMHEYRLEN H  R + KEEWV+CRVF K+
Sbjct:   131 KGRAPRGLKTKWVMHEYRLENDHSHRHTCKEEWVICRVFNKT 172

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010014 "meristem initiation" evidence=IGI;RCA;TAS

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IGI

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

TAIR|locus:2172334 ANAC087 "Arabidopsis NAC domain containing protein 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 77/105 (73%), Positives = 91/105 (86%)

Query:     1 KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRA-GVLVGMKKTLVFY 59
             +A MGEKE+YFF  RDRKYPTG+RTNRATE+GYWK TGKDKEIF+  G LVGMKKTLVFY
Sbjct:    69 RAKMGEKEFYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIFKGKGCLVGMKKTLVFY 128

Query:    60 KGRAPKGEKSNWVMHEYRLENKHPF----RSSKEEWVVCRVFQKS 100
             +GRAPKGEK+NWVMHEYRLE K+ +    +S+++EWVVCRVF K+
Sbjct:   129 RGRAPKGEKTNWVMHEYRLEGKYSYYNLPKSARDEWVVCRVFHKN 173

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2087037 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 8.3e-39, Sum P(2) = 8.3e-39
 Identities = 84/156 (53%), Positives = 101/156 (64%)

Query:     1 KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
             KA +GEKEWYFF +RDRKYPTGLRTNRAT+AGYWK TGKDKEIF+   LVGMKKTLVFYK
Sbjct:    72 KAKLGEKEWYFFCVRDRKYPTGLRTNRATKAGYWKATGKDKEIFKGKSLVGMKKTLVFYK 131

Query:    61 GRAPKGEKSNWVMHEYRLENKHPF----RSSKEEWVVCRVFQKSAAAVKKPQHTPSSQPS 116
             GRAPKG K+NWVMHEYRLE K       +++K E V+ RVF       K  +H     P 
Sbjct:   132 GRAPKGVKTNWVMHEYRLEGKFAIDNLSKTAKNECVISRVFHTRTDGTK--EHMSVGLPP 189

Query:   117 DESLCDTNSMVNEFGDIELPN--LNGIANLTSGFGN 150
                L D++  +   G   L    L G+ +  + F +
Sbjct:   190 ---LMDSSPYLKSRGQDSLAGTTLGGLLSHVTYFSD 222

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010150 "leaf senescence" evidence=IMP

TAIR|locus:2095958 NAC046 "NAC domain containing protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 76/105 (72%), Positives = 89/105 (84%)

Query:     2 ASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRA-GVLVGMKKTLVFYK 60
             A MGEKE+YFF  RDRKYPTG+RTNRAT +GYWK TGKDKEIFR  G LVGMKKTLVFY 
Sbjct:    69 AKMGEKEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDKEIFRGKGCLVGMKKTLVFYT 128

Query:    61 GRAPKGEKSNWVMHEYRLENKHPF----RSSKEEWVVCRVFQKSA 101
             GRAPKGEK+NWVMHEYRL+ K+ +    +++++EWVVCRVF K+A
Sbjct:   129 GRAPKGEKTNWVMHEYRLDGKYSYHNLPKTARDEWVVCRVFHKNA 173

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010286 "heat acclimation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	275
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	8e-52

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  165 bits (420), Expect = 8e-52
 Identities = 59/80 (73%), Positives = 68/80 (85%), Gaps = 1/80 (1%)

Query: 1   KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIF-RAGVLVGMKKTLVFY 59
           KA  G++EWYFF+ RDRKYP G RTNRAT +GYWK TGKDK +  + G +VGMKKTLVFY
Sbjct: 51  KAKGGDREWYFFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFY 110

Query: 60  KGRAPKGEKSNWVMHEYRLE 79
           KGRAPKGEK++WVMHEYRLE
Sbjct: 111 KGRAPKGEKTDWVMHEYRLE 130

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	275
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	99.89

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=99.89  E-value=1.2e-23  Score=171.93  Aligned_cols=75  Identities=60%  Similarity=1.212  Sum_probs=58.9

Q ss_pred             CCceEEEeeecCCCCCCCCCccccCCCCeeEeecCceeEee-CCEEEEEEEEEEeeeccCCCCCccceEEEEEEeC
Q 036376            5 GEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFR-AGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE   79 (275)
Q Consensus         5 gekEWYFFSpR~rKy~~G~R~nRaTg~GyWKatGkdK~I~~-~g~lVG~KKTLvFY~GraP~G~KT~WVMHEYrL~   79 (275)
                      ++++|||||++++++.+|.|.+|++++|+||++|++++|.. ++.+||+||+|+||.++.+++.+|+|+||||+|.
T Consensus        54 ~~~~~yFF~~~~~~~~~~~r~~R~~~~G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   54 GDEEWYFFSPRKKKYPNGGRPNRVTGGGYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             -SSEEEEEEE----------S-EEETTEEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             CCceEEEEEecccccCCcccccccccceEEeecccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            57799999999999999999999999999999999999998 8999999999999999889999999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	275
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		3e-29
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		3e-29
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		8e-25

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
Query: 1   KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
           KA  GEKEWYFF+ RDRKYP G R NR   +GYWK TG DK I   G  VG+KK LVFY 
Sbjct: 65  KALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYI 124
Query: 61  GRAPKGEKSNWVMHEYRL--ENKHPFRSSKEEWVVCRVFQKSAAAVK 105
           G+APKG K+NW+MHEYRL   ++    +  ++WV+CR+++K ++A K
Sbjct: 125 GKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 171

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/107 (55%), Positives = 76/107 (71%), Gaps = 2/107 (1%)
Query: 1   KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
           KA  GEKEWYFF+ RDRKYP G R NR   +GYWK TG DK I   G  VG+KK LVFY 
Sbjct: 68  KALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYI 127
Query: 61  GRAPKGEKSNWVMHEYRL--ENKHPFRSSKEEWVVCRVFQKSAAAVK 105
           G+APKG K+NW+MHEYRL   ++    +  ++WV+CR+++K ++A K
Sbjct: 128 GKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 174

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  110 bits (275), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 68/106 (64%), Gaps = 7/106 (6%)
Query: 1   KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
           +A  G +EWYFF  RDRKYP G R NRA   GYWK TG DK +   G  +G+KK LVFY 
Sbjct: 63  RALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYA 122
Query: 61  GRAPKGEKSNWVMHEYRLENKHPFRSSK-------EEWVVCRVFQK 99
           G+AP+G K++W+MHEYRL +     +         ++WV+CR++ K
Sbjct: 123 GKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNK 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	275
1ut7_A	171	No apical meristem protein; transcription regulati	6e-68
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	1e-65

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  207 bits (529), Expect = 6e-68
 Identities = 60/107 (56%), Positives = 74/107 (69%), Gaps = 2/107 (1%)

Query: 1   KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
           KA  GEKEWYFF+ RDRKYP G R NR   +GYWK TG DK I   G  VG+KK LVFY 
Sbjct: 65  KALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYI 124

Query: 61  GRAPKGEKSNWVMHEYRLENKHPFRSS--KEEWVVCRVFQKSAAAVK 105
           G+APKG K+NW+MHEYRL        S   ++WV+CR+++K ++A K
Sbjct: 125 GKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQK 171

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  201 bits (513), Expect = 1e-65
 Identities = 52/112 (46%), Positives = 69/112 (61%), Gaps = 7/112 (6%)

Query: 1   KASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYK 60
           +A  G +EWYFF  RDRKYP G R NRA   GYWK TG DK +   G  +G+KK LVFY 
Sbjct: 63  RALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYA 122

Query: 61  GRAPKGEKSNWVMHEYRLENKHPFRSSK-------EEWVVCRVFQKSAAAVK 105
           G+AP+G K++W+MHEYRL +     +         ++WV+CR++ K     K
Sbjct: 123 GKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWEK 174

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	275
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=9e-37  Score=264.70  Aligned_cols=101  Identities=50%  Similarity=1.048  Sum_probs=85.7

Q ss_pred             CccCCceEEEeeecCCCCCCCCCccccCCCCeeEeecCceeEeeCCEEEEEEEEEEeeeccCCCCCccceEEEEEEeCCC
Q 036376            2 ASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLENK   81 (275)
Q Consensus         2 A~~gekEWYFFSpR~rKy~~G~R~nRaTg~GyWKatGkdK~I~~~g~lVG~KKTLvFY~GraP~G~KT~WVMHEYrL~~~   81 (275)
                      +.+|+++|||||+|++||++|.|++|+|++||||+||++++|..+|.+||+|||||||.|++|++.||+|+||||+|...
T Consensus        64 ~~~g~~ewYFFs~r~~ky~~g~R~nR~t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~  143 (174)
T 3ulx_A           64 ALFGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADA  143 (174)
T ss_dssp             CSSCSSEEEEEEECCC-----CCSCEEETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSC
T ss_pred             hccCCceEEEEeccccccCCCCCceeecCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCC
Confidence            46789999999999999999999999999999999999999998899999999999999999999999999999999986


Q ss_pred             CCCC-------CCCCCeEEEEEEEcCcc
Q 036376           82 HPFR-------SSKEEWVVCRVFQKSAA  102 (275)
Q Consensus        82 ~~~~-------~~~~ewVLCRVfkKs~~  102 (275)
                      ....       ...++|||||||+|+..
T Consensus       144 ~~~~~~~~~~~~~~~~wVlCrvf~K~~~  171 (174)
T 3ulx_A          144 GRAAAGAKKGSLRLDDWVLCRLYNKKNE  171 (174)
T ss_dssp             C-----------CCSSEEEEEEEESCC-
T ss_pred             CCcccccccCCCCCCCEEEEEEEEcCCC
Confidence            4321       23689999999999865

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=2.9e-36  Score=260.48  Aligned_cols=101  Identities=55%  Similarity=1.088  Sum_probs=82.3

Q ss_pred             CccCCceEEEeeecCCCCCCCCCccccCCCCeeEeecCceeEeeCCEEEEEEEEEEeeeccCCCCCccceEEEEEEeCCC
Q 036376            2 ASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLENK   81 (275)
Q Consensus         2 A~~gekEWYFFSpR~rKy~~G~R~nRaTg~GyWKatGkdK~I~~~g~lVG~KKTLvFY~GraP~G~KT~WVMHEYrL~~~   81 (275)
                      ++.++++|||||+|++||++|.|++|+|++||||+||++++|..++.+||+||+||||+|++|++.||+|+||||+|...
T Consensus        66 ~~~g~~ewyFFs~r~~k~~~g~R~~R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~  145 (171)
T 1ut7_A           66 ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEP  145 (171)
T ss_dssp             SSSCSSEEEEEEECCC-------CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCC
T ss_pred             hhcCCccEEEEeccccccCCCCcccccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCC
Confidence            46789999999999999999999999999999999999999999899999999999999999999999999999999986


Q ss_pred             CCC--CCCCCCeEEEEEEEcCcc
Q 036376           82 HPF--RSSKEEWVVCRVFQKSAA  102 (275)
Q Consensus        82 ~~~--~~~~~ewVLCRVfkKs~~  102 (275)
                      ...  ....++|||||||+|+..
T Consensus       146 ~~~~~~~~~~~~VlCrv~~k~~~  168 (171)
T 1ut7_A          146 SRRNGSTKLDDWVLCRIYKKQSS  168 (171)
T ss_dssp             C--------CCEEEEEEEECC--
T ss_pred             ccccCcccCCCEEEEEEEEcCCC
Confidence            532  134689999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	275
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	2e-42

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  140 bits (355), Expect = 2e-42
 Identities = 57/100 (57%), Positives = 69/100 (69%), Gaps = 2/100 (2%)

Query: 2   ASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYKG 61
           A  GEKEWYFF+ RDRKYP G R NR   +GYWK TG DK I   G  VG+KK LVFY G
Sbjct: 66  ALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIG 125

Query: 62  RAPKGEKSNWVMHEYRLENKHPFRSS--KEEWVVCRVFQK 99
           +APKG K+NW+MHEYRL        S   ++WV+CR+++K
Sbjct: 126 KAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKK 165

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	275
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	99.97

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=2.6e-32  Score=230.72  Aligned_cols=98  Identities=56%  Similarity=1.105  Sum_probs=80.3

Q ss_pred             ccCCceEEEeeecCCCCCCCCCccccCCCCeeEeecCceeEeeCCEEEEEEEEEEeeeccCCCCCccceEEEEEEeCCCC
Q 036376            3 SMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDKEIFRAGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLENKH   82 (275)
Q Consensus         3 ~~gekEWYFFSpR~rKy~~G~R~nRaTg~GyWKatGkdK~I~~~g~lVG~KKTLvFY~GraP~G~KT~WVMHEYrL~~~~   82 (275)
                      ..++++|||||++.+++++|.|.+|+|++|+||++|+++.|.++|.+||+||+|+||+++.+++.+|+|+||||+|.+..
T Consensus        67 ~~~~~~wyFft~~~~k~~~g~r~~R~~g~G~Wk~~g~~~~i~~~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~  146 (166)
T d1ut7a_          67 LFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPS  146 (166)
T ss_dssp             SSCSSEEEEEEECCC-------CCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC
T ss_pred             ccCcceEEEEeeeccccCCCCccccccCCCEecccCCCceEecCCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcc
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999998765


Q ss_pred             CC--CCCCCCeEEEEEEEcC
Q 036376           83 PF--RSSKEEWVVCRVFQKS  100 (275)
Q Consensus        83 ~~--~~~~~ewVLCRVfkKs  100 (275)
                      ..  ....++|||||||+|+
T Consensus       147 ~~~~~~~~~~~VLCrI~~Kk  166 (166)
T d1ut7a_         147 RRNGSTKLDDWVLCRIYKKQ  166 (166)
T ss_dssp             --------CCEEEEEEEECC
T ss_pred             cccCccccCCEEEEEEEecC
Confidence            43  2346899999999984