Citrus Sinensis ID: 036415
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 419 | ||||||
| 449459640 | 407 | PREDICTED: glycosyltransferase-like doma | 0.904 | 0.931 | 0.552 | 1e-131 | |
| 449503225 | 407 | PREDICTED: glycosyltransferase-like doma | 0.904 | 0.931 | 0.552 | 1e-131 | |
| 449484981 | 372 | PREDICTED: glycosyltransferase-like doma | 0.830 | 0.935 | 0.542 | 1e-116 | |
| 297737475 | 420 | unnamed protein product [Vitis vinifera] | 0.770 | 0.769 | 0.516 | 1e-103 | |
| 449526607 | 335 | PREDICTED: glycosyltransferase-like doma | 0.727 | 0.910 | 0.533 | 3e-99 | |
| 356511269 | 462 | PREDICTED: uncharacterized glycosyltrans | 0.861 | 0.781 | 0.432 | 1e-82 | |
| 356527872 | 462 | PREDICTED: uncharacterized glycosyltrans | 0.866 | 0.785 | 0.424 | 9e-82 | |
| 225456057 | 462 | PREDICTED: uncharacterized glycosyltrans | 0.868 | 0.787 | 0.401 | 2e-80 | |
| 357521533 | 420 | Glycosyltransferase, putative [Medicago | 0.861 | 0.859 | 0.409 | 1e-79 | |
| 357521531 | 530 | Glycosyltransferase, putative [Medicago | 0.861 | 0.681 | 0.409 | 2e-79 |
| >gi|449459640|ref|XP_004147554.1| PREDICTED: glycosyltransferase-like domain-containing protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 214/387 (55%), Positives = 294/387 (75%), Gaps = 8/387 (2%)
Query: 33 EDRIKLDTTGFSCHTDLHSELCLVNKPVRIDNSGLTIYVPSSQSYVNRT-----LKPYAN 87
ED +L+ TGF+CHTDLHS++CL N P RI+N+ L Y+ ++ + PYA
Sbjct: 15 EDHTQLERTGFACHTDLHSKVCLTNNPTRINNTNLEFYISTNNDSQQNNFSPILIHPYAR 74
Query: 88 RDDGTAMSRVSPVKIV--NGDVNAPACRITHDAPAVVFSSGGFTGNVFHEINEVIIPLFI 145
++D + V+P++I+ P C+ H+ P ++FS+GGFTGN+FHE +E IIPLFI
Sbjct: 75 QEDKITLRDVTPLQIIFQPNKTLLPLCQFIHNVPVLIFSTGGFTGNLFHEFDETIIPLFI 134
Query: 146 TTRHFRSRLKFLITDYKPWWVSKYSKVLTHLSHYEAINPAANGSAVHCFPGAVIGLVYHG 205
T+ HF++R++FLITD+K WWV KY+++L+ LS + +NPA +GS VHCF G VIGL +H
Sbjct: 135 TSYHFQTRVRFLITDHKTWWVQKYNRILSGLSRFNVVNPAEDGS-VHCFNGGVIGLKFHN 193
Query: 206 KLALNATDIPGGYSAFDFKHFLRESYNLKIKNVSEIKREKPILILISRKKSRVVSNENEI 265
L+LN TDIPGGYS DF+ FLR++YNLK+ NVSE+ +KP+++LISR+ SR NE E+
Sbjct: 194 ILSLNNTDIPGGYSMSDFRSFLRQTYNLKVNNVSELSGKKPMVMLISRQTSRRFMNEGEM 253
Query: 266 VVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTNQVFLPDGAVMVQVVP 325
V MM+E+GFEV+ T P RMSNL+KF+++VN CSV++GAHGAGLTN+VFL +GAV+VQVVP
Sbjct: 254 VEMMKEVGFEVMTTTPQRMSNLDKFSSVVNLCSVIIGAHGAGLTNEVFLANGAVVVQVVP 313
Query: 326 LGLEWASTNYYGAPTKEMGVQYLEYKIEPEESSLMQTYGRDHPVITDPASVFAKGYYAAR 385
GL+W ST ++G P EM +QYLEYKIE +ESSL YG +HPVI DP S+FA+GY+A+R
Sbjct: 314 FGLDWPSTYFFGKPAAEMELQYLEYKIEAKESSLWDKYGENHPVIRDPESIFAQGYFASR 373
Query: 386 AVYIDAQNLKINVKRFKETVVQAKELI 412
A+YID QNLKIN+ RF++T++Q K+LI
Sbjct: 374 AIYIDEQNLKINLTRFRDTMIQVKKLI 400
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449503225|ref|XP_004161896.1| PREDICTED: glycosyltransferase-like domain-containing protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|449484981|ref|XP_004157036.1| PREDICTED: glycosyltransferase-like domain-containing protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|297737475|emb|CBI26676.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|449526607|ref|XP_004170305.1| PREDICTED: glycosyltransferase-like domain-containing protein 2-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356511269|ref|XP_003524349.1| PREDICTED: uncharacterized glycosyltransferase AGO61-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356527872|ref|XP_003532530.1| PREDICTED: uncharacterized glycosyltransferase AGO61-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|225456057|ref|XP_002277670.1| PREDICTED: uncharacterized glycosyltransferase AGO61-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|357521533|ref|XP_003631055.1| Glycosyltransferase, putative [Medicago truncatula] gi|355525077|gb|AET05531.1| Glycosyltransferase, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|357521531|ref|XP_003631054.1| Glycosyltransferase, putative [Medicago truncatula] gi|355525076|gb|AET05530.1| Glycosyltransferase, putative [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 419 | ||||||
| TAIR|locus:2062709 | 500 | AT2G41640 [Arabidopsis thalian | 0.859 | 0.72 | 0.365 | 1.4e-71 | |
| TAIR|locus:2092757 | 384 | AT3G18170 [Arabidopsis thalian | 0.871 | 0.950 | 0.375 | 1.5e-67 | |
| TAIR|locus:2092762 | 470 | AT3G18180 [Arabidopsis thalian | 0.873 | 0.778 | 0.376 | 2.4e-67 | |
| TAIR|locus:2082598 | 504 | AT3G57380 [Arabidopsis thalian | 0.725 | 0.603 | 0.398 | 6.7e-65 | |
| TAIR|locus:2063793 | 452 | AT2G03370 [Arabidopsis thalian | 0.852 | 0.789 | 0.375 | 1.8e-64 | |
| TAIR|locus:2076274 | 494 | AT3G10320 [Arabidopsis thalian | 0.706 | 0.599 | 0.366 | 2.7e-61 | |
| TAIR|locus:2063809 | 455 | AT2G03360 [Arabidopsis thalian | 0.852 | 0.784 | 0.354 | 1.7e-59 | |
| UNIPROTKB|Q5NDF2 | 580 | GTDC2 "Glycosyltransferase-lik | 0.548 | 0.396 | 0.268 | 1.7e-06 | |
| UNIPROTKB|F1SFQ3 | 527 | EOGT "Uncharacterized protein" | 0.596 | 0.474 | 0.242 | 3.2e-06 | |
| UNIPROTKB|F1SRD5 | 580 | GTDC2 "Uncharacterized protein | 0.548 | 0.396 | 0.264 | 4.8e-06 |
| TAIR|locus:2062709 AT2G41640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
Identities = 139/380 (36%), Positives = 236/380 (62%)
Query: 47 TDLHSELCLVNKPVRIDNSGLTIYVPSSQSYVN---RTLKPYANRDDGTAMSRVSPVKIV 103
T L S++C++ VR +++ +I++ +S + N +KPY + + + M V + ++
Sbjct: 104 TGLRSDICVMKGDVRTNSASSSIFLFTSSTNNNTKPEKIKPYTRKWETSVMDTVQELNLI 163
Query: 104 NGDVNAPA---CRITHDAPAVVFSSGGFTGNVFHEINEVIIPLFITTRHFRSRLKFLITD 160
D N + C + HD PAV FS+GG+TGNV+HE N+ IIPLFIT++H+ ++ F+I +
Sbjct: 164 TKDSNKSSDRVCDVYHDVPAVFFSTGGYTGNVYHEFNDGIIPLFITSQHYNKKVVFVIVE 223
Query: 161 YKPWWVSKYSKVLTHLSHYEAINPAANGSA-VHCFPGAVIGLVYHGKLALNATDIPGGYS 219
Y WW KY V++ LS Y ++ NG HCF A +GL H +L +N++ + G +
Sbjct: 224 YHDWWEMKYGDVVSQLSDYPLVD--FNGDTRTHCFKEATVGLRIHDELTVNSSLVIGNQT 281
Query: 220 AFDFKHFLRESYNLKIKNVSEIKRE----------KPILILISRK-KSRVVSNENEIVVM 268
DF++ L Y+ +I+++++ + E KP L+++SR SR + NEN +V +
Sbjct: 282 IVDFRNVLDRGYSHRIQSLTQEETEANVTALDFKKKPKLVILSRNGSSRAILNENLLVEL 341
Query: 269 MEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTNQVFLPDGAVMVQVVPLGL 328
E+ GF V V RP + + + K +N+ V++G HGA +T+ +FL V +Q++PLG
Sbjct: 342 AEKTGFNVEVLRPQKTTEMAKIYRSLNTSDVMIGVHGAAMTHFLFLKPKTVFIQIIPLGT 401
Query: 329 EWASTNYYGAPTKEMGVQYLEYKIEPEESSLMQTYGRDHPVITDPASVFAKGYYAARAVY 388
+WA+ YYG P K++G++Y+ YKI P+ESSL + YG+D PVI DP S+ KG+ + +Y
Sbjct: 402 DWAAETYYGEPAKKLGLKYVGYKIAPKESSLYEEYGKDDPVIRDPDSLNDKGWEYTKKIY 461
Query: 389 IDAQNLKINVKRFKETVVQA 408
+ QN+K++++RF+ET+ ++
Sbjct: 462 LQGQNVKLDLRRFRETLTRS 481
|
|
| TAIR|locus:2092757 AT3G18170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2092762 AT3G18180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2082598 AT3G57380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2063793 AT2G03370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2076274 AT3G10320 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2063809 AT2G03360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5NDF2 GTDC2 "Glycosyltransferase-like domain-containing protein 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1SFQ3 EOGT "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1SRD5 GTDC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 419 | |||
| pfam04577 | 206 | pfam04577, DUF563, Protein of unknown function (DU | 8e-18 | |
| COG4421 | 368 | COG4421, COG4421, Capsular polysaccharide biosynth | 1e-06 |
| >gnl|CDD|218156 pfam04577, DUF563, Protein of unknown function (DUF563) | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 8e-18
Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 217 GYSAFDFKHFLRESYNLKIKNVSEIKREKPILILISRKKS--RVVSNENEIVVMMEELGF 274
+ A + L ++ + + KP + ISRKK+ R + NE+E+ + + GF
Sbjct: 73 PFPAGGYFGPLLPRLRDLLRERFNLSKIKPRKVYISRKKAGRRRILNEDELEEALPKYGF 132
Query: 275 EVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTNQVFLPDGAVMVQVVP 325
E+V P +S L + L +S V+VG HG+ LTN +F+P G +V++VP
Sbjct: 133 EIV--DPETLS-LEEQVKLFSSAKVIVGPHGSALTNLIFMPPGTGVVELVP 180
|
Family of uncharacterized proteins. Length = 206 |
| >gnl|CDD|226845 COG4421, COG4421, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 419 | |||
| KOG4698 | 475 | consensus Uncharacterized conserved protein [Funct | 100.0 | |
| PF04577 | 206 | DUF563: Protein of unknown function (DUF563); Inte | 99.97 | |
| COG4421 | 368 | Capsular polysaccharide biosynthesis protein [Carb | 99.84 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 89.47 |
| >KOG4698 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-74 Score=582.11 Aligned_cols=373 Identities=35% Similarity=0.662 Sum_probs=347.5
Q ss_pred CCCCcceecCC-CCcCceEeeCCEEeeCCCcEEEEecCC-----CCCcccccCcccCCCccccCcceeeEEecCC-CCCC
Q 036415 38 LDTTGFSCHTD-LHSELCLVNKPVRIDNSGLTIYVPSSQ-----SYVNRTLKPYANRDDGTAMSRVSPVKIVNGD-VNAP 110 (419)
Q Consensus 38 ~~~~~~~C~~~-~~~d~C~~~gdvr~~~~~~t~~~~~~~-----~~~~~~i~Py~Rk~~~~~m~~v~e~~v~~~~-~~~~ 110 (419)
.+++.+.||++ .++|+|+++||+|+|+.++|++..-.. ...+|+||||+|||+..+|..|+|++|.... +...
T Consensus 81 ~e~~~~~C~~~g~~s~~c~~kg~~r~h~~~~~~~~~~~~~~~~s~~~~e~ikpy~rk~~~~vmp~vre~~l~~~~~~~~r 160 (475)
T KOG4698|consen 81 LEDSSFFCDRSGTRSDFCEMKGDVRTHPDSSTVLLTLGRLLTFSGRLVEKIKPYTRKGETWVMPEVRELNLLVRPGSEIR 160 (475)
T ss_pred cCCceEEeeccccccchhhhcCccccCcchhhhhhhccchhhhccccchhcccccccccccccccccccceEEcCCcccc
Confidence 46678999999 999999999999999999999876653 3589999999999999999999999995544 5678
Q ss_pred CCceeecCCeEEEEeCCcCCccchhhhhhhhhHHhhhh--hcCCceEEEEeCCCcchhhhHHHHHHhhcCCceecCCCCC
Q 036415 111 ACRITHDAPAVVFSSGGFTGNVFHEINEVIIPLFITTR--HFRSRLKFLITDYKPWWVSKYSKVLTHLSHYEAINPAANG 188 (419)
Q Consensus 111 ~C~~~~~~Pavvf~~~gy~~N~~H~~~D~liPLf~t~~--~f~~dv~llv~d~~~~w~~ky~~ll~~ls~~~iI~l~~~~ 188 (419)
+|++.|++|+++|++|||++|.||+|+|+++|||++.+ .|+.++++++++..+||..+|.+++++||+||+++++++.
T Consensus 161 ~c~v~~~~pa~vfs~Gg~tgn~yhdf~d~~ipL~it~~~~~~n~ev~~li~~~~~ww~~kf~Dvv~~lSn~~~v~~~~~~ 240 (475)
T KOG4698|consen 161 RCDVNHEVPAIVFSTGGYTGNEYHDFNDGIIPLFITEAELRFNKEVQFLITETHSWWDMKFGDVVRQLSNYPVVDFDAEL 240 (475)
T ss_pred eeeeecccchheeecCCcchhhHHHHHhhhhhhhcccchhcccccEEEEEEEcchhhhhhHHHHHHhcCCCceEEecCCc
Confidence 99999999999999999999999999999999999999 7899999999999999999999999999999999999888
Q ss_pred CceeeecceEEeeeecCccccCCCCCCCC--CCHHHHHHHHHHHcCCCccc--cc-cccCCCcEEEEEEcCCCCcccCHH
Q 036415 189 SAVHCFPGAVIGLVYHGKLALNATDIPGG--YSAFDFKHFLRESYNLKIKN--VS-EIKREKPILILISRKKSRVVSNEN 263 (419)
Q Consensus 189 ~~~~CF~~~iVGl~~h~~l~i~p~~~~~~--~~i~~F~~fLr~~y~l~~~~--~~-~~~~~~pr~~~i~R~~~R~i~Ne~ 263 (419)
.+|||.+++|||..|.++.++|+..++. .+|.+|+++|+.+|+.+++. .+ ..+.++||+++++|.++|.|+||+
T Consensus 241 -~ThcF~~~~vgL~~h~~y~v~~t~~~~~~~~s~~~fr~~l~~a~~~~i~~~~~t~~~~~kkpri~~lsR~~~r~Ilne~ 319 (475)
T KOG4698|consen 241 -RTHCFKEAIVGLVSHFPYAVNPTQPPPNGTLSMLDFRNLLDKALSPRIPEANVTAPEPWKKPRITILSRAGSRAILNED 319 (475)
T ss_pred -eEEEeeeeeeeeeecccccccCCcCCCccccccccHHHHHHHHhcccccccccCCcChhhCCceEEEecccchhhhcch
Confidence 9999999999999999999999887765 79999999999999874421 11 334567999999999999999999
Q ss_pred HHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhhhhhccCCCcEEEEEeeCC-CccccCcchhhHHhh
Q 036415 264 EIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTNQVFLPDGAVMVQVVPLG-LEWASTNYYGAPTKE 342 (419)
Q Consensus 264 ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLtn~lFm~pgs~vIEI~P~g-~~~~~~~~y~~lA~~ 342 (419)
||.++++..||+|.+++++. .++.+|+++.+++|||+|+|||||||++|+||++++|||.|+| .+|.+..+|.++|+.
T Consensus 320 el~~~~~~~gf~v~~~~~~~-t~v~~~~~i~~s~~vmiGvHGa~lth~lfl~~~~~~iqi~pcg~~~w~a~~a~~~p~k~ 398 (475)
T KOG4698|consen 320 ELPRMLEDIGFEVSVLRPDR-TEVAKQLRITNSSDVMIGVHGAGLTHLLFLPPWAGVIQIYPCGDPGWAAKLARLRPAKY 398 (475)
T ss_pred hhhHHHHhCCCceEEecccc-cchhhhhheeeccceeeeccCccceeEEecCCcceEEEEEECCCccchhhhhhccccce
Confidence 99999999999999999987 9999999999999999999999999999999999999999999 999999999999999
Q ss_pred cCCeEEEEEeecCcCccccccCCCCCcccCCccccccchhhhh-hhhcCCccEEEehHHHHHHHHHHHHhh
Q 036415 343 MGVQYLEYKIEPEESSLMQTYGRDHPVITDPASVFAKGYYAAR-AVYIDAQNLKINVKRFKETVVQAKELI 412 (419)
Q Consensus 343 ~gl~Y~~y~~~~~Essl~~~y~~~~~~~~dP~~~~~~gW~~~~-~~yl~~Qdv~vd~~rf~~~L~~a~~~l 412 (419)
|+++|.+|++.++||+|.++|++||+++.||.+..++||+..+ .+||..|+|++|+.||++.+.+|....
T Consensus 399 ~~l~y~~ykI~~~es~l~~~y~~d~~~v~dp~s~~~~~f~~~k~~~yl~~q~v~ld~nRf~~~~~~a~~~~ 469 (475)
T KOG4698|consen 399 MTLEYAEYKIRAEESELYHKYGGDNTIVFDPISFQKKGFEETKKKVYLELQAVRLDINRFRKTLVKAYLKE 469 (475)
T ss_pred eccccceeEEeecccceeeeccCCCceecccceeccccceeeeeeeeEeEeeeehhhhhcccchhHHHHHH
Confidence 9999999999999999999999999999999999999999888 899999999999999999999996543
|
|
| >PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61 | Back alignment and domain information |
|---|
| >COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 419 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-08 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 5e-08
Identities = 56/372 (15%), Positives = 103/372 (27%), Gaps = 103/372 (27%)
Query: 112 CRITHDAPAVVFSSGGFTGNVFHEINEVII-P--------LFITTRHFRSRL--KF---- 156
C+ D P + S EI+ +I+ LF T + + KF
Sbjct: 35 CKDVQDMPKSILSK--------EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 157 LITDYKPWWVSKYSKV-----LTHLSHYEAINPAANGSAVHCF-PGAV------------ 198
L +Y + +S + + E + N + V F V
Sbjct: 87 LRINY-KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--FAKYNVSRLQPYLKLRQA 143
Query: 199 -------IGLVYHG-----K--LALNATDIPGGYSAFDFKHF-LRESYNLKIKNVSEIKR 243
++ G K +AL+ DFK F L N+
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL---------NLKNCNS 194
Query: 244 EKPILILISRKKSRVVSNENEIVVMME--ELGFEVVVTRPNRM----------------S 285
+ +L ++ + ++ N +L + R+
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 286 NLNKFAALVNSCSVLVGAHGAGLTNQVFLPDGAVMVQVVPLGLEWASTNYYGAPTKEMGV 345
N + A SC +L+ +T+ + A + L+ S K + +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFL---SAATTTHIS---LDHHSMTLTPDEVKSLLL 308
Query: 346 QYLEYKIE--PEES--------SLMQTYGRDHPVITDP-ASVFAKGYYAARAVYIDAQNL 394
+YL+ + + P E S++ RD D V ++
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 395 KINVKRFKETVV 406
K F V
Sbjct: 369 AEYRKMFDRLSV 380
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 419 | |||
| d1gdha2 | 129 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 88.38 |
| >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=88.38 E-value=1.8 Score=34.37 Aligned_cols=90 Identities=11% Similarity=0.267 Sum_probs=65.5
Q ss_pred CcEEEEEEcCCCCcccCHHHHHHHHHHcCCEEEEEcCCCCCCHHHHHHHHhcCCEEEEecchhhhhhhc--cCCCcEEEE
Q 036415 245 KPILILISRKKSRVVSNENEIVVMMEELGFEVVVTRPNRMSNLNKFAALVNSCSVLVGAHGAGLTNQVF--LPDGAVMVQ 322 (419)
Q Consensus 245 ~pr~~~i~R~~~R~i~Ne~ev~~~l~~~gf~v~~~e~~~~~s~~eq~~l~~~advlVgvHGAgLtn~lF--m~pgs~vIE 322 (419)
|||+++ .+. + .++.++.+++ .|+++....+..++-+|.++...++|++|...+..++.-+| +|+.-.+|-
T Consensus 1 K~kVli-t~~----~--~~~~~~~l~~-~~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~ 72 (129)
T d1gdha2 1 KKKILI-TWP----L--PEAAMARARE-SYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCIS 72 (129)
T ss_dssp CCEEEE-SSC----C--CHHHHHHHHT-TSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEE
T ss_pred CCEEEE-eCC----C--CHHHHHHHHc-CCcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeee
Confidence 567664 332 2 3466777776 46887655445589999999999999999888889999999 566788888
Q ss_pred EeeCCCccccCcchhhHHhhcCCe
Q 036415 323 VVPLGLEWASTNYYGAPTKEMGVQ 346 (419)
Q Consensus 323 I~P~g~~~~~~~~y~~lA~~~gl~ 346 (419)
-+.-|+++.+ -..|+..|+.
T Consensus 73 ~~gvG~d~ID----~~~a~~~gI~ 92 (129)
T d1gdha2 73 TYSIGFDHID----LDACKARGIK 92 (129)
T ss_dssp EESSCCTTBC----HHHHHHTTCE
T ss_pred ecccCCcccc----HHHHHhCCCE
Confidence 8888875433 2456678875
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