Citrus Sinensis ID: 036467

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
NLPTDIITDIFTRLPVKSLIRFKCVSKSMYALVHNKIFIKKHVNRAIHQSDPKLILKNEFKLFGVEIINDKKLIRARKLQVPFALSLEKVEISGSCNGLLCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDGELILYDFENEIATDFKIQRAPRWFSVTTFVESLVSP
cccHHHHHHHHHcccHHHHHHHHcccccHHHHcccHHHHHHHHHccccccccEEEEEcccEEEEEEEccccccccEEccccccccccccEEEEcEEEEEEEEEEcccccEEEEEccccccEEEccccccccccccccEEEEEEEEEEcccccEEEEEEEEEEccccccccccccEEEEEEcccccEEEEcccccEEEcccccEEEcccEEEEEEEcccccccEEEEEEEccccEEEEEcccccccccccccEEEEEEccEEEEEEEccccEEEEEEEEEccccccEEEEEEEccccccccccccccccccEEEEEEEEcccccEEEEEEEcccEEEEEEccccEEEEEEEEcccccEEEEEEEEccccc
cccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccEEEEEEEccEEEEEEccccccccccccccccccccccEEEEEEcccEEEEEEEcccccEEEEEccccccEEEEcccccccccccccEEEEEEEEEccccccEEEEEEEEEEccccccccccEEEEEEEEcccccEEEEEccccccccccccEEEEcEEEEEEEEcccccccEEEEEEEccccccccccccccccccccEEEEEEEEccEEEEEEEccccEEEEEEEEccccccEEEEEEEEccccccccccEEEEcEEEEEEEEEEEEcccccEEEEEEcccEEEEEEccccEEEEEEEccccccccEEEEccccccc
NLPTDIITDIFTRLPVKSLIRFKCVSKSMYALVHNKIFIKKHVnraihqsdpkliLKNEFKLFGVEIINDKKLIRARKLQVPFALSLEKVEISgscngllcisdqscnediflfnpstkkykklpvpefdvptiettcftslgfgyhqadddYKVIRSIylydkpfvdidsyECEARVYSLASDkwkkinggipyhisSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNreefkeihrpeykdshdkcqIEVGVFRGEFAMFHMWREDRVEIWTmkdfgareSWTRMFVIGRRAlinfdnyafvhlkpvcemmnlsngngknflliekgdgelilYDFENeiatdfkiqraprwfSVTTFVESLVSP
nlptdiitdiftrlpvkslIRFKCVSKSMYALVHNKIFIKKHVNRAIHQSDPKLILKNEFKLFGVEIINDKKLIRARKLQVPFALSLEKVEISGSCNGLLCISDQSCNEDIFLFnpstkkykklpVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWKKINGGIPYHISSRAAVCFNECLIWKasrglgrgMTVLVVAFDMNREEFKeihrpeykdshdkCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDGELILYDFENEIATdfkiqraprWFSVTTFVESLVSP
NLPTDIITDIFTRLPVKSLIRFKCVSKSMYALVHNKIFIKKHVNRAIHQSDPKLILKNEFKLFGVEIINDKKLIRARKLQVPFALSLEKVEISGSCNGLLCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDGELILYDFENEIATDFKIQRAPRWFSVTTFVESLVSP
****DIITDIFTRLPVKSLIRFKCVSKSMYALVHNKIFIKKHVNRAIHQSDPKLILKNEFKLFGVEIINDKKLIRARKLQVPFALSLEKVEISGSCNGLLCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDGELILYDFENEIATDFKIQRAPRWFSVTTFVES****
NLPTDIITDIFTRLPVKSLIRFKCVSKSMYALVHNKIFIKKHVNRAIHQSDPKLILKNEFKLFGVEIINDKKLIRARKLQVPFALSLEKVEISGSCNGLLCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDGELILYDFENEIATDFKIQRAPRWFSVTTFVESLVSP
NLPTDIITDIFTRLPVKSLIRFKCVSKSMYALVHNKIFIKKHVNRAIHQSDPKLILKNEFKLFGVEIINDKKLIRARKLQVPFALSLEKVEISGSCNGLLCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDGELILYDFENEIATDFKIQRAPRWFSVTTFVESLVSP
NLPTDIITDIFTRLPVKSLIRFKCVSKSMYALVHNKIFIKKHVNRAIHQSDPKLILKNEFKLFGVEIINDKKLIRARKLQVPFALSLEKVEISGSCNGLLCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDGELILYDFENEIATDFKIQRAPRWFSVTTFVESLVS*
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NLPTDIITDIFTRLPVKSLIRFKCVSKSMYALVHNKIFIKKHVNRAIHQSDPKLILKNEFKLFGVEIINDKKLIRARKLQVPFALSLEKVEISGSCNGLLCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRPEYKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDGELILYDFENEIATDFKIQRAPRWFSVTTFVESLVSP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query369 2.2.26 [Sep-21-2011]
Q9SU30413 F-box protein CPR30 OS=Ar yes no 0.951 0.849 0.282 2e-38
Q8GXC7427 F-box/kelch-repeat protei no no 0.915 0.791 0.303 4e-32
Q9SFC7417 F-box protein At3g07870 O no no 0.937 0.829 0.251 1e-24
Q9LIR8364 F-box/kelch-repeat protei no no 0.747 0.758 0.272 2e-21
Q9SUY0402 F-box protein At4g22390 O no no 0.915 0.840 0.232 3e-20
Q9LQL5302 Putative F-box protein At no no 0.663 0.811 0.274 5e-16
Q9LPW2416 Putative F-box/kelch-repe no no 0.739 0.656 0.230 4e-15
Q3E7D1403 F-box protein At2g40925 O no no 0.742 0.679 0.250 5e-15
Q9FGS3357 Putative F-box protein At no no 0.723 0.747 0.231 3e-14
Q9FHP3392 F-box protein At5g65850 O no no 0.696 0.655 0.268 3e-14
>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 Back     alignment and function desciption
 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/382 (28%), Positives = 189/382 (49%), Gaps = 31/382 (8%)

Query: 1   NLPTDIITDIFTRLPVKSLIRFKCVSKSMYALVHNKIFIKKHVNRAIHQSDPKLI-LKNE 59
            +P DI+ DIF RLP K+L+R + +SK  Y L+++  FI+ H++R +   D  +I L+  
Sbjct: 3   TIPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGA 62

Query: 60  FKLFGVEIINDKKLIRARKLQVPFALSLEKVEISGSCNGLLCISDQSCNEDIFLFNPSTK 119
            +L+ V++     L     ++ P        E+ GS NGL+ +S+     D+ +FNPST+
Sbjct: 63  LRLYSVDL---DSLDSVSDVEHPMKRG-GPTEVFGSSNGLIGLSNSPT--DLAVFNPSTR 116

Query: 120 KYKKLPVPEFDVPTIETT-CFTSLGFGYHQADDDYKVIRSIYLYDKPFVDID-SYECEAR 177
           +  +LP    D+P   +T  +   G GY    DDYKV+R +        ++  S+  E +
Sbjct: 117 QIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVK 176

Query: 178 VYSLASDKWKKINGGIP---------YHISSRA--AVCFNECLIWKASRGLGRGMTVLVV 226
           V+SL  + WK+I              YH+  R    V     L W   R  G     L+V
Sbjct: 177 VFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIV 236

Query: 227 AFDMNREEFKEIHRPE-YKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARES 285
            FD+  EEF+ +  PE   + +   Q+++GV  G   +   + +  V++W MK++  R+S
Sbjct: 237 RFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDS 296

Query: 286 WTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDGELILYDFENEIA 345
           WT++F + +   +     +F +++P      L     K  +L+E  + +L+ +D E++  
Sbjct: 297 WTKVFTVQKPKSVK----SFSYMRP------LVYSKDKKKVLLELNNTKLVWFDLESKKM 346

Query: 346 TDFKIQRAPRWFSVTTFVESLV 367
           +  +I+  P  +S    V SLV
Sbjct: 347 STLRIKDCPSSYSAELVVSSLV 368
Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function description
>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1 Back     alignment and function description
>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1 Back     alignment and function description
>sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3 Back     alignment and function description
>sp|Q9LQL5|FB30_ARATH Putative F-box protein At1g32420 OS=Arabidopsis thaliana GN=At1g32420 PE=4 SV=1 Back     alignment and function description
>sp|Q9LPW2|FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=4 SV=2 Back     alignment and function description
>sp|Q3E7D1|FB131_ARATH F-box protein At2g40925 OS=Arabidopsis thaliana GN=At2g40925 PE=2 SV=1 Back     alignment and function description
>sp|Q9FGS3|FB287_ARATH Putative F-box protein At5g50220 OS=Arabidopsis thaliana GN=At5g50220 PE=4 SV=1 Back     alignment and function description
>sp|Q9FHP3|FB300_ARATH F-box protein At5g65850 OS=Arabidopsis thaliana GN=At5g65850 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query369
224086399380 predicted protein [Populus trichocarpa] 0.956 0.928 0.514 3e-94
359806236406 uncharacterized protein LOC100815072 [Gl 0.921 0.837 0.308 4e-41
356555602405 PREDICTED: F-box/kelch-repeat protein At 0.921 0.839 0.306 2e-40
224089631400 predicted protein [Populus trichocarpa] 0.948 0.875 0.311 1e-38
224089629396 f-box family protein [Populus trichocarp 0.940 0.876 0.311 2e-38
224053103408 predicted protein [Populus trichocarpa] 0.934 0.845 0.329 1e-37
255583943389 ubiquitin-protein ligase, putative [Rici 0.932 0.884 0.299 6e-37
224064862408 f-box family protein [Populus trichocarp 0.956 0.865 0.283 1e-36
4725955408 putative protein [Arabidopsis thaliana] 0.951 0.860 0.282 1e-36
30682162413 F-box protein CPR30 [Arabidopsis thalian 0.951 0.849 0.282 1e-36
>gi|224086399|ref|XP_002307880.1| predicted protein [Populus trichocarpa] gi|222853856|gb|EEE91403.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 191/371 (51%), Positives = 257/371 (69%), Gaps = 18/371 (4%)

Query: 1   NLPTDIITDIFTRLPVKSLIRFKCVSKSMYALVHNKIFIKKHVNRAIHQSDPKLILKNEF 60
           N+P+DII+DI TRLPVKSL RFK VSKSM A + N  F+K+H+ RA +  +P L+LK++ 
Sbjct: 20  NIPSDIISDILTRLPVKSLTRFKSVSKSMLAFLGNPEFVKQHLKRA-NLKNPNLVLKHDS 78

Query: 61  KLFGVEIINDKKLIRARKLQVPFALSLEKVEISGSCNGLLCISDQSCNEDIFLFNPSTKK 120
           KLF VE   D++  +AR+L +PF+L LEKVEISGSCNG+LCISDQ CN+DIFL NPST  
Sbjct: 79  KLFYVE---DEEWSKARRLPLPFSLCLEKVEISGSCNGILCISDQQCNQDIFLLNPSTGV 135

Query: 121 YKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYS 180
           +K LP   FD+  +E + FT++GFGYHQA+DDYKVIR +Y+YDKPF+DIDSYECEARVYS
Sbjct: 136 FKHLPFSGFDIAAVENS-FTTMGFGYHQAEDDYKVIRCVYIYDKPFIDIDSYECEARVYS 194

Query: 181 LASDKWKKINGGIPYHISSRAAVCF-NECLIWKASRGLGRGMTVLVVAFDMNREEFKEIH 239
           L + +WK I G IPYH+  +AA+   N+ LIWKA+ GLGR    L+V++DM++EEFKEI 
Sbjct: 195 LKAGEWKDI-GTIPYHLGYKAAIWLGNDFLIWKATIGLGRTGRYLIVSYDMSKEEFKEIP 253

Query: 240 RPEYKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARESWTRMFVIGRRALIN 299
           +P   + +D+  +EV VF G  + F++ + D   IW+MK++G  +SW    VI  +    
Sbjct: 254 QP-IVNYNDELHMEVSVFDGLLSTFYLSKYDEAHIWSMKEYGVTDSWELRVVI--KLPWR 310

Query: 300 FDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDGELILYDFENEIATDFK-IQRAPRWFS 358
            +NY ++ LKP   +  L NG     +LIE G+   IL+D + +       I+  PR F 
Sbjct: 311 VENYNYIFLKP---LTILKNGE----ILIEAGEKARILHDPKKDSYRIINPIRGVPRRFL 363

Query: 359 VTTFVESLVSP 369
           VT  V SLVSP
Sbjct: 364 VTPIVGSLVSP 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359806236|ref|NP_001241466.1| uncharacterized protein LOC100815072 [Glycine max] gi|255637050|gb|ACU18857.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356555602|ref|XP_003546119.1| PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max] Back     alignment and taxonomy information
>gi|224089631|ref|XP_002308788.1| predicted protein [Populus trichocarpa] gi|222854764|gb|EEE92311.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224089629|ref|XP_002308787.1| f-box family protein [Populus trichocarpa] gi|222854763|gb|EEE92310.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224053103|ref|XP_002297705.1| predicted protein [Populus trichocarpa] gi|222844963|gb|EEE82510.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255583943|ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224064862|ref|XP_002301588.1| f-box family protein [Populus trichocarpa] gi|222843314|gb|EEE80861.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|4725955|emb|CAB41726.1| putative protein [Arabidopsis thaliana] gi|7267958|emb|CAB78299.1| putative protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30682162|ref|NP_192993.2| F-box protein CPR30 [Arabidopsis thaliana] gi|145333023|ref|NP_001078377.1| F-box protein CPR30 [Arabidopsis thaliana] gi|142989747|sp|Q9SU30.2|CPR30_ARATH RecName: Full=F-box protein CPR30; AltName: Full=Protein CONSTITUTIVE EXPRESSER OF PR GENES 30 gi|332657747|gb|AEE83147.1| F-box protein CPR30 [Arabidopsis thaliana] gi|332657748|gb|AEE83148.1| F-box protein CPR30 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query369
TAIR|locus:2135615413 CPR1 "AT4G12560" [Arabidopsis 0.948 0.847 0.288 3.4e-38
TAIR|locus:2076196364 AT3G23880 "AT3G23880" [Arabido 0.745 0.755 0.281 5.2e-26
TAIR|locus:2077452417 AT3G07870 "AT3G07870" [Arabido 0.943 0.834 0.258 2.2e-25
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.875 0.756 0.300 6.5e-24
TAIR|locus:2127465402 AT4G22390 "AT4G22390" [Arabido 0.924 0.848 0.244 6.8e-24
TAIR|locus:2010316416 AT1G12870 "AT1G12870" [Arabido 0.742 0.658 0.238 3e-16
TAIR|locus:2033739302 AT1G32420 "AT1G32420" [Arabido 0.607 0.741 0.269 8.6e-16
TAIR|locus:2172239379 AT5G62660 "AT5G62660" [Arabido 0.457 0.445 0.281 6.6e-15
TAIR|locus:2089473410 AT3G21410 "AT3G21410" [Arabido 0.766 0.690 0.244 1.7e-14
TAIR|locus:504955955403 AT2G40925 "AT2G40925" [Arabido 0.742 0.679 0.250 4.8e-14
TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 110/381 (28%), Positives = 191/381 (50%)

Query:     2 LPTDIITDIFTRLPVKSLIRFKCVSKSMYALVHNKIFIKKHVNRAIHQSDPKLIL-KNEF 60
             +P DI+ DIF RLP K+L+R + +SK  Y L+++  FI+ H++R +   D  +IL +   
Sbjct:     4 IPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGAL 63

Query:    61 KLFGVEIINDKKLIRARKLQVPFALSLEKVEISGSCNGLLCISDQSCNEDIFLFNPSTKK 120
             +L+ V++  D  L     ++ P        E+ GS NGL+ +S+     D+ +FNPST++
Sbjct:    64 RLYSVDL--DS-LDSVSDVEHPMKRG-GPTEVFGSSNGLIGLSNSPT--DLAVFNPSTRQ 117

Query:   121 YKKLPVPEFDVPTIETTC-FTSLGFGYHQADDDYKVIRSIYLYDKPFVDID-SYECEARV 178
               +LP    D+P   +T  +   G GY    DDYKV+R +        ++  S+  E +V
Sbjct:   118 IHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELGCSFPYEVKV 177

Query:   179 YSLASDKWKKING---GIP------YHISSRAA--VCFNECLIWKASRGLGRGMTVLVVA 227
             +SL  + WK+I      I       YH+  R    V     L W   R  G     L+V 
Sbjct:   178 FSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVR 237

Query:   228 FDMNREEFKEIHRPE-YKDSHDKCQIEVGVFRGEFAMFHMWREDRVEIWTMKDFGARESW 286
             FD+  EEF+ +  PE   + +   Q+++GV  G   +   + +  V++W MK++  R+SW
Sbjct:   238 FDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMMKEYNVRDSW 297

Query:   287 TRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGDGELILYDFENEIAT 346
             T++F + +   +     +F +++P      L     K  +L+E  + +L+ +D E++  +
Sbjct:   298 TKVFTVQKPKSVK----SFSYMRP------LVYSKDKKKVLLELNNTKLVWFDLESKKMS 347

Query:   347 DFKIQRAPRWFSVTTFVESLV 367
               +I+  P  +S    V SLV
Sbjct:   348 TLRIKDCPSSYSAELVVSSLV 368
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=IDA
GO:0031348 "negative regulation of defense response" evidence=IMP
GO:0042177 "negative regulation of protein catabolic process" evidence=IMP
TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127465 AT4G22390 "AT4G22390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010316 AT1G12870 "AT1G12870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033739 AT1G32420 "AT1G32420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172239 AT5G62660 "AT5G62660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089473 AT3G21410 "AT3G21410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955955 AT2G40925 "AT2G40925" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 7e-26
pfam0064648 pfam00646, F-box, F-box domain 7e-07
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 2e-06
pfam1293747 pfam12937, F-box-like, F-box-like 2e-04
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score =  103 bits (259), Expect = 7e-26
 Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 20/219 (9%)

Query: 94  GSCNGLLCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDY 153
             C+GL+C S       + ++NPST + + LP P+      E+  +     GY   +  Y
Sbjct: 2   VPCDGLICFSYGKR---LVVWNPSTGQSRWLPTPKSRRSNKESDTY---FLGYDPIEKQY 55

Query: 154 KVIRSIYLYDKPFVDIDSYECEARVYSLASDKWKKINGGIPYHISSRAAVCFNECLIWKA 213
           KV+     +     + +  E +  VY+L S+ W+ I    P+H      VC N  L + A
Sbjct: 56  KVLC----FSDRSGNRNQSEHQ--VYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLA 109

Query: 214 SRGLGRGMTVLVVAFDMNREEFKE-IHRPEYKDSHDKCQIEVGVFRGEFAMFHMWRED-- 270
                     + V+FD++ E FKE I  P            +  ++G+ A+    ++D  
Sbjct: 110 YTLKTNPDYFI-VSFDVSSERFKEFIPLPCGNSDSVDYLS-LINYKGKLAVLK-QKKDTN 166

Query: 271 RVEIWTMKDFGARESWTRMFVIGRRALINF-DNYAFVHL 308
             ++W + D G +E W+++F +    L +  D+      
Sbjct: 167 NFDLWVLNDAGKQE-WSKLFTVPIPPLPDLVDDNFLSGF 204

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 369
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.73
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.64
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.61
PHA02713557 hypothetical protein; Provisional 99.51
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.45
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.4
PHA02713557 hypothetical protein; Provisional 99.37
PHA03098534 kelch-like protein; Provisional 99.36
PHA02790480 Kelch-like protein; Provisional 99.31
PLN02153341 epithiospecifier protein 99.23
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 99.21
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 99.14
PLN02193470 nitrile-specifier protein 99.06
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 99.06
PHA03098534 kelch-like protein; Provisional 99.03
PLN02153341 epithiospecifier protein 99.0
PHA02790480 Kelch-like protein; Provisional 98.99
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.81
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.77
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.72
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.68
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.68
PLN02193470 nitrile-specifier protein 98.59
TIGR03548 323 mutarot_permut cyclically-permuted mutatrotase fam 98.55
KOG4693392 consensus Uncharacterized conserved protein, conta 98.38
KOG1230 521 consensus Protein containing repeated kelch motifs 98.14
KOG4693392 consensus Uncharacterized conserved protein, conta 97.86
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 97.62
KOG0379482 consensus Kelch repeat-containing proteins [Genera 97.41
KOG0281499 consensus Beta-TrCP (transducin repeats containing 97.37
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.27
PF1396450 Kelch_6: Kelch motif 96.84
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 96.6
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 96.55
COG3055381 Uncharacterized protein conserved in bacteria [Fun 96.17
KOG1230 521 consensus Protein containing repeated kelch motifs 96.17
smart00284255 OLF Olfactomedin-like domains. 96.1
KOG2997366 consensus F-box protein FBX9 [General function pre 95.86
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 95.77
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 95.35
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 95.05
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 94.72
PF1396450 Kelch_6: Kelch motif 94.65
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 94.37
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 93.77
PF07893 342 DUF1668: Protein of unknown function (DUF1668); In 93.17
smart0061247 Kelch Kelch domain. 92.99
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 92.98
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 92.85
smart0061247 Kelch Kelch domain. 92.36
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 91.91
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 91.91
PLN02772 398 guanylate kinase 91.53
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 91.5
PF1341549 Kelch_3: Galactose oxidase, central domain 91.31
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 90.49
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 89.86
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 85.88
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 85.83
COG1520 370 FOG: WD40-like repeat [Function unknown] 85.7
PF12458448 DUF3686: ATPase involved in DNA repair ; InterPro: 84.28
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 83.67
PF13859310 BNR_3: BNR repeat-like domain; PDB: 3B69_A. 83.04
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 82.53
KOG0647 347 consensus mRNA export protein (contains WD40 repea 81.67
TIGR03075 527 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan 81.6
TIGR03074 764 PQQ_membr_DH membrane-bound PQQ-dependent dehydrog 80.52
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=7.6e-35  Score=251.26  Aligned_cols=225  Identities=22%  Similarity=0.396  Sum_probs=166.6

Q ss_pred             EeeecccEEEeeccCCceEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCC
Q 036467           93 SGSCNGLLCISDQSCNEDIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSY  172 (369)
Q Consensus        93 ~~s~~GLl~~~~~~~~~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~  172 (369)
                      ++|||||||+..   ...++||||+||+++.||+++......   ....++||||+.+++||||++...     . .+..
T Consensus         1 ~~sCnGLlc~~~---~~~~~V~NP~T~~~~~LP~~~~~~~~~---~~~~~~~G~d~~~~~YKVv~~~~~-----~-~~~~   68 (230)
T TIGR01640         1 VVPCDGLICFSY---GKRLVVWNPSTGQSRWLPTPKSRRSNK---ESDTYFLGYDPIEKQYKVLCFSDR-----S-GNRN   68 (230)
T ss_pred             CcccceEEEEec---CCcEEEECCCCCCEEecCCCCCccccc---ccceEEEeecccCCcEEEEEEEee-----c-CCCC
Confidence            479999999886   378999999999999999876431110   122679999999999999999761     1 1224


Q ss_pred             cceEEEEEcCCCceEEccCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCccee-eeCCCCCcCCCCCce
Q 036467          173 ECEARVYSLASDKWKKINGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFK-EIHRPEYKDSHDKCQ  251 (369)
Q Consensus       173 ~~~~~vys~~t~~W~~~~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~-~i~~P~~~~~~~~~~  251 (369)
                      ...++||++++++||.+....+.......+|++||.+||++....+. ....|++||+++|+|+ .+++|..... ....
T Consensus        69 ~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~~P~~~~~-~~~~  146 (230)
T TIGR01640        69 QSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIPLPCGNSD-SVDY  146 (230)
T ss_pred             CccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeeecCccccc-cccc
Confidence            57899999999999999322222222334799999999999765321 1137999999999999 5899976521 1234


Q ss_pred             eEEEEECCcEEEEEecCC-CeEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEE
Q 036467          252 IEVGVFRGEFAMFHMWRE-DRVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEK  330 (369)
Q Consensus       252 ~~l~~~~G~L~~~~~~~~-~~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  330 (369)
                      ..|++++|+|+++..... ..++||+|++++.. .|+|+++|+......+   .. ...+.++    .++   |+|++..
T Consensus       147 ~~L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~-~W~k~~~i~~~~~~~~---~~-~~~~~~~----~~~---g~I~~~~  214 (230)
T TIGR01640       147 LSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQ-EWSKLFTVPIPPLPDL---VD-DNFLSGF----TDK---GEIVLCC  214 (230)
T ss_pred             eEEEEECCEEEEEEecCCCCcEEEEEECCCCCC-ceeEEEEEcCcchhhh---hh-heeEeEE----eeC---CEEEEEe
Confidence            689999999999988643 56999999998764 4999999996544311   11 1457788    776   8999987


Q ss_pred             CC--Ce-EEEEECCCC
Q 036467          331 GD--GE-LILYDFENE  343 (369)
Q Consensus       331 ~~--~~-~~~ydl~~~  343 (369)
                      ..  .. +++||++++
T Consensus       215 ~~~~~~~~~~y~~~~~  230 (230)
T TIGR01640       215 EDENPFYIFYYNVGEN  230 (230)
T ss_pred             CCCCceEEEEEeccCC
Confidence            64  34 999999975

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>COG1520 FOG: WD40-like repeat [Function unknown] Back     alignment and domain information
>PF12458 DUF3686: ATPase involved in DNA repair ; InterPro: IPR020958 This entry represents an N-terminal domain associated with ATPases and some uncharacterised proteins; it is approximately 450 amino acids in length and contains two conserved sequence motifs: DVF and SPNGED Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family Back     alignment and domain information
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 51/390 (13%), Positives = 102/390 (26%), Gaps = 129/390 (33%)

Query: 16  VKSLIRFKCVSKSM----YALVHNK------IFIKKHVNRAIHQSDPKLILKNEFK---- 61
           + S I+ +    SM    Y    ++      +F K +V+R      P L L+        
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL----QPYLKLRQALLELRP 149

Query: 62  -----LFG----------VEIINDKKLIRARKLQVPFALSLEKVEISGSCNG-------- 98
                + G          +++    K+      ++ F L+L       +CN         
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-FWLNL------KNCNSPETVLEML 202

Query: 99  -LLCI---------SDQSCN-----EDI-----FLFNPSTKKYKK-LPV------PE--- 128
             L           SD S N       I      L    +K Y+  L V       +   
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL--KSKPYENCLLVLLNVQNAKAWN 260

Query: 129 -FDV--PTIETTCFTSLGFGYHQADD---DYKVIRSIYLYDKPFVDIDSYECEARVYSLA 182
            F++    + TT F  +       D          S+  +       +      +     
Sbjct: 261 AFNLSCKILLTTRFKQV------TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 183 SDKWKK-INGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEIHRP 241
                + +    P  +S  A    +    W   +              +N ++   I   
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-------------HVNCDKLTTI--- 358

Query: 242 EYKDSHDKCQIEVGVFRGEFAMFHMWREDRVEI--------WTMKDFGARESWTRMFVIG 293
             + S +   +E   +R  F    ++      I        W                  
Sbjct: 359 -IESSLN--VLEPAEYRKMFDRLSVFPPS-AHIPTILLSLIWFDVIKSDVMVVVNKLH-- 412

Query: 294 RRALINFDNYAF------VHLKPVCEMMNL 317
           + +L+             ++L+   ++ N 
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENE 442

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query369
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.56
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.55
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.5
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.49
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.47
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.46
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.43
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.34
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.33
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.31
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.29
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.27
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.23
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 99.11
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.09
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.0
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 98.97
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.84
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.79
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.72
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.67
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.65
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.36
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 97.85
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.19
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.41
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.0
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 95.74
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 95.09
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 94.23
2iwa_A 266 Glutamine cyclotransferase; pyroglutamate, acyltra 94.12
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 93.61
3jrp_A 379 Fusion protein of protein transport protein SEC13 93.23
3jro_A 753 Fusion protein of protein transport protein SEC13 92.99
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 92.77
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 91.98
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 91.84
4e54_B435 DNA damage-binding protein 2; beta barrel, double 91.76
3q7m_A 376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 91.05
3v9f_A 781 Two-component system sensor histidine kinase/RESP 89.86
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 89.76
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 89.73
3dwl_C 377 Actin-related protein 2/3 complex subunit 1; prope 89.56
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 89.2
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 88.46
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 88.38
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 87.44
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 87.38
3hfq_A 347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 87.27
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 86.66
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 86.31
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 85.27
1ri6_A 343 Putative isomerase YBHE; 7-bladed propeller, enzym 85.1
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 84.94
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 84.85
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 84.72
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 84.61
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 84.16
4aow_A340 Guanine nucleotide-binding protein subunit beta-2; 84.05
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 83.94
4a0p_A 628 LRP6, LRP-6, low-density lipoprotein receptor-rela 83.8
3vgz_A353 Uncharacterized protein YNCE; beta-propeller, prot 83.14
3v65_B386 Low-density lipoprotein receptor-related protein; 82.77
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 82.66
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 82.65
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 82.53
3u4y_A331 Uncharacterized protein; structural genomics, PSI- 82.38
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 82.19
3m0c_C791 LDL receptor, low-density lipoprotein receptor; pr 81.38
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 81.01
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 80.88
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 80.51
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 80.06
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
Probab=99.56  E-value=9.8e-12  Score=111.41  Aligned_cols=197  Identities=12%  Similarity=0.182  Sum_probs=132.5

Q ss_pred             eEEEEcCCccceeeCCCCCCCCCCCcccceEEEEEeeeCCCCCeEEEEEEeeeCCCcccCCCCcceEEEEEcCCCceEEc
Q 036467          110 DIFLFNPSTKKYKKLPVPEFDVPTIETTCFTSLGFGYHQADDDYKVIRSIYLYDKPFVDIDSYECEARVYSLASDKWKKI  189 (369)
Q Consensus       110 ~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~~~~vys~~t~~W~~~  189 (369)
                      .++++||.|++|..+|+++..+..     .....+      ++ +++.+....    .+.......+++|++.+++|+.+
T Consensus        79 ~~~~~d~~~~~W~~~~~~p~~r~~-----~~~~~~------~~-~iyv~GG~~----~~~~~~~~~~~~yd~~~~~W~~~  142 (318)
T 2woz_A           79 YFFQLDNVSSEWVGLPPLPSARCL-----FGLGEV------DD-KIYVVAGKD----LQTEASLDSVLCYDPVAAKWSEV  142 (318)
T ss_dssp             EEEEEETTTTEEEECSCBSSCBCS-----CEEEEE------TT-EEEEEEEEB----TTTCCEEEEEEEEETTTTEEEEE
T ss_pred             cEEEEeCCCCcEEECCCCCccccc-----cceEEE------CC-EEEEEcCcc----CCCCcccceEEEEeCCCCCEeEC
Confidence            389999999999999988765432     111111      12 444444310    01223456799999999999999


Q ss_pred             cCCCCeeeccCCcEEECceEEEEeecCCCCCceeEEEEEECCCcceeee-CCCCCcCCCCCceeEEEEECCcEEEEEecC
Q 036467          190 NGGIPYHISSRAAVCFNECLIWKASRGLGRGMTVLVVAFDMNREEFKEI-HRPEYKDSHDKCQIEVGVFRGEFAMFHMWR  268 (369)
Q Consensus       190 ~~~~p~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~il~fD~~~e~~~~i-~~P~~~~~~~~~~~~l~~~~G~L~~~~~~~  268 (369)
                       ..+|.....+..+..+|.||.+++..........+..||+.+++|+.+ ++|...     .....+..+|+|+++....
T Consensus       143 -~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-----~~~~~~~~~~~iyv~GG~~  216 (318)
T 2woz_A          143 -KNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPR-----SMFGVAIHKGKIVIAGGVT  216 (318)
T ss_dssp             -CCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCC-----BSCEEEEETTEEEEEEEEE
T ss_pred             -CCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCc-----ccceEEEECCEEEEEcCcC
Confidence             778877666667889999999997643222335799999999999999 555443     3456678899999998764


Q ss_pred             CC--eEEEEEeccCCCCCCeeEEEEEcccccccccccccceeeeeEEeeeccCCCCCCeEEEEECC--------------
Q 036467          269 ED--RVEIWTMKDFGARESWTRMFVIGRRALINFDNYAFVHLKPVCEMMNLSNGNGKNFLLIEKGD--------------  332 (369)
Q Consensus       269 ~~--~~~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------  332 (369)
                      ..  .-++|+++-  ...+|+++..++....         ... ..+    . +   ++|++..+.              
T Consensus       217 ~~~~~~~~~~yd~--~~~~W~~~~~~p~~r~---------~~~-~~~----~-~---~~i~v~GG~~~~~~~~~~~~~~~  276 (318)
T 2woz_A          217 EDGLSASVEAFDL--KTNKWEVMTEFPQERS---------SIS-LVS----L-A---GSLYAIGGFAMIQLESKEFAPTE  276 (318)
T ss_dssp             TTEEEEEEEEEET--TTCCEEECCCCSSCCB---------SCE-EEE----E-T---TEEEEECCBCCBC----CCBCCB
T ss_pred             CCCccceEEEEEC--CCCeEEECCCCCCccc---------ceE-EEE----E-C---CEEEEECCeeccCCCCceeccce
Confidence            32  346777775  3467999765443221         111 122    2 3   677776431              


Q ss_pred             -CeEEEEECCCCeEEEe
Q 036467          333 -GELILYDFENEIATDF  348 (369)
Q Consensus       333 -~~~~~ydl~~~~~~~v  348 (369)
                       ..+..||+++++|+++
T Consensus       277 ~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          277 VNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             CCCEEEEETTTTEEEEE
T ss_pred             eeeEEEEeCCCCEehhh
Confidence             2489999999999998
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Back     alignment and structure
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 369
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 7e-07
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 1e-04
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 5e-04
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (102), Expect = 7e-07
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 1  NLPTDIITDIFTRLPVKSLIRFKCVSKSMYALVHNKIF 38
          +LP +++  IF+ L +  L++   V K  Y L  ++  
Sbjct: 3  SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query369
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.21
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.87
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.76
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.55
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.44
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 98.19
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.19
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 98.08
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 90.44
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 89.49
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 89.04
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 88.57
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 80.32
d1flga_ 582 Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax 80.18
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.2e-12  Score=76.80  Aligned_cols=38  Identities=26%  Similarity=0.528  Sum_probs=36.0

Q ss_pred             CCcHHHHHHHhccCCccccceeeecccchhcccCChhh
Q 036467            1 NLPTDIITDIFTRLPVKSLIRFKCVSKSMYALVHNKIF   38 (369)
Q Consensus         1 ~LP~Dll~eIL~rLp~~~l~r~r~VcK~W~~li~~~~F   38 (369)
                      +||+|++.+||++||+++++|++.|||+|+.+++++.+
T Consensus         3 ~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           3 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             SSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             cCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            59999999999999999999999999999999998864
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure