Citrus Sinensis ID: 036469

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSIFGVQESAKDTMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGEQLLFRQRAP
ccHHHHHHccccccccHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHEEEcccccEEEccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
ccHHHHHHHHcccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHEEccccccccEEEEEHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccc
MDTLGALALateqptndlmskppvgrseplITKLMWRNLIPQAIYQVAILLTLQfkgrsifgvqesakdtMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFAdterlnwgqWAACIGIAAmswpigflfkcipvsgeqllfrqrap
MDTLGALALateqptndlmskppvGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSIFGVQESAKDTMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGEQLLFRQRAP
MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSIFGVQESAKDTMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGEQLLFRQRAP
*****************************LITKLMWRNLIPQAIYQVAILLTLQFKGRSIFGVQESAKDTMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGEQLLF*****
MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSIFGVQESAKDTMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGEQLLFRQR**
MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSIFGVQESAKDTMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGEQLLFRQRAP
*DTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSIFGVQESAKDTMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGEQLLFRQR**
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
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MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSIFGVQESAKDTMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGEQLLFRQRAP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query171 2.2.26 [Sep-21-2011]
Q9LY771033 Calcium-transporting ATPa yes no 1.0 0.165 0.666 6e-67
Q9LIK71017 Putative calcium-transpor no no 0.929 0.156 0.716 7e-63
Q9LF791074 Calcium-transporting ATPa no no 0.929 0.148 0.626 5e-59
Q9SZR11069 Calcium-transporting ATPa no no 0.929 0.148 0.585 2e-53
Q9LU411086 Calcium-transporting ATPa no no 0.929 0.146 0.584 6e-51
Q2RAS01017 Probable calcium-transpor no no 0.947 0.159 0.479 1e-43
Q2QY121039 Probable calcium-transpor no no 0.947 0.155 0.473 9e-43
Q371451020 Calcium-transporting ATPa no no 0.947 0.158 0.481 1e-41
Q9M2L41025 Putative calcium-transpor no no 0.953 0.159 0.467 3e-39
Q8RUN11043 Calcium-transporting ATPa no no 0.982 0.161 0.468 3e-39
>sp|Q9LY77|ACA12_ARATH Calcium-transporting ATPase 12, plasma membrane-type OS=Arabidopsis thaliana GN=ACA12 PE=2 SV=1 Back     alignment and function desciption
 Score =  253 bits (645), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 114/171 (66%), Positives = 141/171 (82%)

Query: 1    MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSI 60
            MDTLGALALATE+PTN+L+ + PVGR+E LIT +MWRNL+ Q++YQ+A+LL LQFKG SI
Sbjct: 848  MDTLGALALATERPTNELLKRKPVGRTEALITNVMWRNLLVQSLYQIAVLLILQFKGMSI 907

Query: 61   FGVQESAKDTMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMV 120
            F V++  KDT+IFNTFV CQ+FNEFNAR++EKKN+FKG+H+N+LF+ II ITIVLQ+IMV
Sbjct: 908  FSVRKEVKDTLIFNTFVLCQVFNEFNAREMEKKNVFKGLHRNRLFIGIIAITIVLQVIMV 967

Query: 121  EFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGEQLLFRQRAP 171
            EFLKKFADT RLN  QW  CI +A++SWPIGF  K IPVS    L   + P
Sbjct: 968  EFLKKFADTVRLNGWQWGTCIALASLSWPIGFFTKFIPVSETPFLSYFKNP 1018
This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the translocation of calcium from the cytosol out of the cell or into organelles.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 8
>sp|Q9LIK7|ACA13_ARATH Putative calcium-transporting ATPase 13, plasma membrane-type OS=Arabidopsis thaliana GN=ACA13 PE=3 SV=1 Back     alignment and function description
>sp|Q9LF79|ACA8_ARATH Calcium-transporting ATPase 8, plasma membrane-type OS=Arabidopsis thaliana GN=ACA8 PE=1 SV=1 Back     alignment and function description
>sp|Q9SZR1|ACA10_ARATH Calcium-transporting ATPase 10, plasma membrane-type OS=Arabidopsis thaliana GN=ACA10 PE=1 SV=2 Back     alignment and function description
>sp|Q9LU41|ACA9_ARATH Calcium-transporting ATPase 9, plasma membrane-type OS=Arabidopsis thaliana GN=ACA9 PE=2 SV=2 Back     alignment and function description
>sp|Q2RAS0|ACA5_ORYSJ Probable calcium-transporting ATPase 5, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os11g0140400 PE=3 SV=1 Back     alignment and function description
>sp|Q2QY12|ACA4_ORYSJ Probable calcium-transporting ATPase 4, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os12g0136900 PE=3 SV=1 Back     alignment and function description
>sp|Q37145|ACA1_ARATH Calcium-transporting ATPase 1, chloroplastic OS=Arabidopsis thaliana GN=ACA1 PE=1 SV=3 Back     alignment and function description
>sp|Q9M2L4|ACA11_ARATH Putative calcium-transporting ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=ACA11 PE=3 SV=1 Back     alignment and function description
>sp|Q8RUN1|ACA3_ORYSJ Calcium-transporting ATPase 3, plasma membrane-type OS=Oryza sativa subsp. japonica GN=Os01g0939100 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query171
224130658 966 autoinhibited calcium ATPase [Populus tr 0.964 0.170 0.8 4e-76
255542302 1026 cation-transporting atpase plant, putati 0.964 0.160 0.754 3e-75
225432828 1011 PREDICTED: putative calcium-transporting 0.964 0.163 0.763 1e-73
255552023 1013 cation-transporting atpase plant, putati 0.929 0.156 0.792 4e-73
224107941 998 autoinhibited calcium ATPase [Populus tr 0.929 0.159 0.792 1e-72
224102125 984 autoinhibited calcium ATPase [Populus tr 0.929 0.161 0.792 4e-72
147773027 560 hypothetical protein VITISV_002535 [Viti 0.935 0.285 0.781 6e-72
359477570 1009 PREDICTED: putative calcium-transporting 0.964 0.163 0.763 7e-72
255542300 996 cation-transporting atpase plant, putati 0.929 0.159 0.786 1e-71
225432836 1011 PREDICTED: putative calcium-transporting 0.964 0.163 0.793 7e-71
>gi|224130658|ref|XP_002328344.1| autoinhibited calcium ATPase [Populus trichocarpa] gi|222838059|gb|EEE76424.1| autoinhibited calcium ATPase [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  288 bits (738), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 132/165 (80%), Positives = 150/165 (90%)

Query: 1   MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSI 60
           MDTLGALALATEQPT DLM++ PVGRSEPLITK+MWRNL+ QA+YQV+ILLTLQFKG++I
Sbjct: 797 MDTLGALALATEQPTIDLMARTPVGRSEPLITKIMWRNLVAQALYQVSILLTLQFKGKAI 856

Query: 61  FGVQESAKDTMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMV 120
           FGV E  K+T++FNTFV CQ+FNEFNARKLEKKNIFKGIHKNKLFLAIIG+TI+LQ+IMV
Sbjct: 857 FGVDEKIKNTLVFNTFVLCQVFNEFNARKLEKKNIFKGIHKNKLFLAIIGVTIILQVIMV 916

Query: 121 EFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGEQLL 165
           E LKKFA TERLNW QW ACIGIA +SWPIG L KCIPVS +QL+
Sbjct: 917 ELLKKFASTERLNWEQWGACIGIAVLSWPIGCLVKCIPVSSKQLM 961

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255542302|ref|XP_002512214.1| cation-transporting atpase plant, putative [Ricinus communis] gi|223548175|gb|EEF49666.1| cation-transporting atpase plant, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225432828|ref|XP_002279593.1| PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255552023|ref|XP_002517056.1| cation-transporting atpase plant, putative [Ricinus communis] gi|223543691|gb|EEF45219.1| cation-transporting atpase plant, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224107941|ref|XP_002314662.1| autoinhibited calcium ATPase [Populus trichocarpa] gi|222863702|gb|EEF00833.1| autoinhibited calcium ATPase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224102125|ref|XP_002312557.1| autoinhibited calcium ATPase [Populus trichocarpa] gi|222852377|gb|EEE89924.1| autoinhibited calcium ATPase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147773027|emb|CAN67182.1| hypothetical protein VITISV_002535 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359477570|ref|XP_002279443.2| PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255542300|ref|XP_002512213.1| cation-transporting atpase plant, putative [Ricinus communis] gi|223548174|gb|EEF49665.1| cation-transporting atpase plant, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225432836|ref|XP_002279818.1| PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query171
TAIR|locus:20845781017 AT3G22910 [Arabidopsis thalian 0.929 0.156 0.716 2.3e-61
TAIR|locus:20873631033 AT3G63380 [Arabidopsis thalian 0.935 0.154 0.7 1.8e-59
TAIR|locus:21755791074 ACA8 ""autoinhibited Ca2+ -ATP 0.929 0.148 0.644 2.1e-51
TAIR|locus:21239241069 ACA10 "autoinhibited Ca(2+)-AT 0.929 0.148 0.585 1.9e-46
TAIR|locus:20947261086 ACA9 "autoinhibited Ca(2+)-ATP 0.929 0.146 0.584 3.2e-46
TAIR|locus:20297941020 ACA1 "autoinhibited Ca2+-ATPas 0.929 0.155 0.490 1.1e-37
TAIR|locus:20825281025 ACA11 "autoinhibited Ca2+-ATPa 0.953 0.159 0.473 3.4e-36
TAIR|locus:20626731030 ACA4 ""autoinhibited Ca(2+)-AT 0.929 0.154 0.460 4.1e-35
TAIR|locus:20592011015 ACA7 "auto-regulated Ca2+-ATPa 0.929 0.156 0.490 6.5e-35
TAIR|locus:21200961014 ACA2 "calcium ATPase 2" [Arabi 0.929 0.156 0.478 2.2e-34
TAIR|locus:2084578 AT3G22910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 634 (228.2 bits), Expect = 2.3e-61, P = 2.3e-61
 Identities = 114/159 (71%), Positives = 136/159 (85%)

Query:     1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSI 60
             MDTLGALALATE+PTNDLM K P+GR  PLIT +MWRNL+ QA YQ+++LL LQF+GRSI
Sbjct:   844 MDTLGALALATEKPTNDLMKKKPIGRVAPLITNIMWRNLLAQAFYQISVLLVLQFRGRSI 903

Query:    61 FGVQESAKDTMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGITIVLQLIMV 120
             F V E  K+T+IFNTFV CQ+FNEFNAR LEKKN+FKG+HKN+LF+ II +T+VLQ++MV
Sbjct:   904 FNVTEKVKNTLIFNTFVLCQVFNEFNARSLEKKNVFKGLHKNRLFIGIIVVTVVLQVVMV 963

Query:   121 EFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPV 159
             EFLK+FADTERLN GQW  CI IAA SWPIG+L K +PV
Sbjct:   964 EFLKRFADTERLNLGQWGVCIAIAAASWPIGWLVKSVPV 1002
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0005388 "calcium-transporting ATPase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0006754 "ATP biosynthetic process" evidence=IEA
GO:0006812 "cation transport" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0015662 "ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0070588 "calcium ion transmembrane transport" evidence=IEA
GO:0005516 "calmodulin binding" evidence=ISS
GO:0006816 "calcium ion transport" evidence=RCA
GO:0006882 "cellular zinc ion homeostasis" evidence=RCA
GO:0009624 "response to nematode" evidence=RCA
TAIR|locus:2087363 AT3G63380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175579 ACA8 ""autoinhibited Ca2+ -ATPase, isoform 8"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123924 ACA10 "autoinhibited Ca(2+)-ATPase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094726 ACA9 "autoinhibited Ca(2+)-ATPase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029794 ACA1 "autoinhibited Ca2+-ATPase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082528 ACA11 "autoinhibited Ca2+-ATPase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062673 ACA4 ""autoinhibited Ca(2+)-ATPase, isoform 4"" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059201 ACA7 "auto-regulated Ca2+-ATPase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120096 ACA2 "calcium ATPase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_700203
autoinhibited calcium ATPase (967 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query171
TIGR01517944 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium- 1e-58
pfam00689175 pfam00689, Cation_ATPase_C, Cation transporting AT 6e-40
COG0474917 COG0474, MgtA, Cation transport ATPase [Inorganic 4e-15
TIGR01522884 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium- 2e-12
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating P-type ATPase Back     alignment and domain information 
 Score =  195 bits (498), Expect = 1e-58
 Identities = 76/169 (44%), Positives = 108/169 (63%), Gaps = 9/169 (5%)

Query: 1   MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSI 60
           MDTL ALALATE PT  L+ + P+GR+ PLI++ MW+N++ QA YQ+ +   L F G SI
Sbjct: 776 MDTLAALALATEPPTEALLDRKPIGRNAPLISRSMWKNILGQAGYQLVVTFILLFAGGSI 835

Query: 61  FGV---------QESAKDTMIFNTFVFCQIFNEFNARKLEKKNIFKGIHKNKLFLAIIGI 111
           F V         Q+   +T++FNTFV  Q+FNE NARKL ++N+F+G+ KN++F+ I+G 
Sbjct: 836 FDVSGPDEITSHQQGELNTIVFNTFVLLQLFNEINARKLYERNVFEGLFKNRIFVTIMGF 895

Query: 112 TIVLQLIMVEFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVS 160
           T   Q+I+VEF   F  T  L+  QW  C+ +  +S   G L + IPV 
Sbjct: 896 TFGFQVIIVEFGGSFFSTVSLSIEQWIGCVLLGMLSLIFGVLLRLIPVE 944

This model describes the P-type ATPase responsible for translocating calcium ions across the plasma membrane of eukaryotes , out of the cell. In some organisms, this type of pump may also be found in vacuolar membranes. In humans and mice, at least, there are multiple isoforms of the PMCA pump with overlapping but not redundant functions. Accordingly, there are no human diseases linked to PMCA defects, although alterations of PMCA function do elicit physiological effects. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1) which are modelled by TIGR01116 and TIGR01522. This model is well separated from those. Length = 944
>gnl|CDD|216063 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus Back     alignment and domain information
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating P-type ATPase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 171
PF00689182 Cation_ATPase_C: Cation transporting ATPase, C-ter 100.0
TIGR01522884 ATPase-IIA2_Ca golgi membrane calcium-translocatin 99.96
KOG0202972 consensus Ca2+ transporting ATPase [Inorganic ion 99.96
TIGR015231053 ATPase-IID_K-Na potassium and/or sodium efflux P-t 99.96
TIGR01116917 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium 99.95
TIGR01517941 ATPase-IIB_Ca plasma-membrane calcium-translocatin 99.95
KOG02041034 consensus Calcium transporting ATPase [Inorganic i 99.94
TIGR01106997 ATPase-IIC_X-K sodium or proton efflux -- potassiu 99.92
KOG02031019 consensus Na+/K+ ATPase, alpha subunit [Inorganic 99.86
PRK15122903 magnesium-transporting ATPase; Provisional 99.86
TIGR01524867 ATPase-IIIB_Mg magnesium-translocating P-type ATPa 99.76
PRK10517902 magnesium-transporting ATPase MgtA; Provisional 99.76
COG0474917 MgtA Cation transport ATPase [Inorganic ion transp 99.73
TIGR016571054 P-ATPase-V P-type ATPase of unknown pump specifici 99.33
TIGR01647755 ATPase-IIIA_H plasma-membrane proton-efflux P-type 98.87
TIGR016521057 ATPase-Plipid phospholipid-translocating P-type AT 97.97
KOG02101051 consensus P-type ATPase [Inorganic ion transport a 91.66
KOG02091160 consensus P-type ATPase [Inorganic ion transport a 87.99
PF06570206 DUF1129: Protein of unknown function (DUF1129); In 82.04
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information 
Probab=100.00  E-value=5.3e-35  Score=220.01  Aligned_cols=156  Identities=37%  Similarity=0.590  Sum_probs=133.1

Q ss_pred             CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCccc-------hhhHHHH
Q 036469            1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSIFGVQES-------AKDTMIF   73 (171)
Q Consensus         1 ~D~~palaL~~ep~~~~~M~r~Pr~~~~~ll~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~g~~~~-------~a~T~~F   73 (171)
                      +|++||++++.||+|+|+|+||||+++|++++++++.+++.+|+.++++++..|+......|.+.+       ++||++|
T Consensus        16 ~d~~~a~al~~e~~~~~im~r~Pr~~~~~l~~~~~~~~i~~~g~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~T~~F   95 (182)
T PF00689_consen   16 TDLLPALALGFEPPDPDIMKRPPRDPNEPLINKRLLRRILIQGLIMAAACFFAFFLGLYIFGWDEETNNDNLAQAQTMAF   95 (182)
T ss_dssp             TTHHHHHHGGGSS-STTGGGS---TTTS-SSSHHHHHHHCCHHHHHHHHHHHHHHHHHHSTCSSSHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcchhhhhhccccccchhhccHHhHhHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999999877654454443       4999999


Q ss_pred             HHHHHHHHHHHHhhhcCCcccccc--ccccCHHHHHHHHHHHHHHHHHH--HhhhhhhccccCChhHHHHHHHHHHHHHH
Q 036469           74 NTFVFCQIFNEFNARKLEKKNIFK--GIHKNKLFLAIIGITIVLQLIMV--EFLKKFADTERLNWGQWAACIGIAAMSWP  149 (171)
Q Consensus        74 ~~lv~~q~~~~~~~R~~~~~~~~~--~~~~N~~l~~~~~~~~~l~~~~v--~~l~~~f~~~~l~~~~w~~~~~~~~~~~~  149 (171)
                      ++++++|++|++++|+. +++.++  +.++|++++.++++++++|++++  |+++++|++.|+++.+|+++++.++..++
T Consensus        96 ~~lv~~q~~~~~~~r~~-~~~~~~~~~~~~N~~l~~~~~~~~~l~~~i~~~P~~~~~f~~~~l~~~~w~~~l~~~~~~~~  174 (182)
T PF00689_consen   96 TALVLSQLFNAFNCRSR-RRSVFRFRGIFSNKWLLIAILISIALQILIVYVPGLNRIFGTAPLPLWQWLICLALALLPFI  174 (182)
T ss_dssp             HHHHHHHHHHHHHTSSS-SSTCTT-STGGGSHHHHHHHHHHHHHHHHHHHSTTHHHHST----THHHHHCHHHHHCHHHH
T ss_pred             HHHHHHHHhhhcccccc-cccceecccccccchHHHHHHHHHHHHHHHhcchhhHhhhcccCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999996 456654  78899999999999999999876  46999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 036469          150 IGFLFKCI  157 (171)
Q Consensus       150 ~~e~~K~i  157 (171)
                      +.|++|++
T Consensus       175 ~~ei~K~i  182 (182)
T PF00689_consen  175 VDEIRKLI  182 (182)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHC
Confidence            99999985

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase Back     alignment and domain information
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type Back     alignment and domain information
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase Back     alignment and domain information
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase Back     alignment and domain information
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit Back     alignment and domain information
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15122 magnesium-transporting ATPase; Provisional Back     alignment and domain information
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase Back     alignment and domain information
>PRK10517 magnesium-transporting ATPase MgtA; Provisional Back     alignment and domain information
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V) Back     alignment and domain information
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase Back     alignment and domain information
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase Back     alignment and domain information
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query171
3ar4_A995 Sarcoplasmic/endoplasmic reticulum calcium ATPase; 3e-25
2zxe_A1028 Na, K-ATPase alpha subunit; membrane protein, ION 3e-17
3ixz_A1034 Potassium-transporting ATPase alpha; ION pump, H+, 4e-16
3b8c_A885 ATPase 2, plasma membrane-type; P-type ATPase, pro 7e-11
1mhs_A920 Proton pump, plasma membrane ATPase; ION transport 3e-07
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Length = 995 Back     alignment and structure
 Score =  100 bits (250), Expect = 3e-25
 Identities = 36/190 (18%), Positives = 64/190 (33%), Gaps = 34/190 (17%)

Query: 1   MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTL------- 53
            D L A AL    P  D+M +PP    EPLI+  ++   +    Y  A  +         
Sbjct: 800 TDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMY 859

Query: 54  -----------------------QFKGRSIFGVQESAKDTMIFNTFVFCQIFNEFNARKL 90
                                   F+G      +     TM  +  V  ++ N  N+   
Sbjct: 860 AEDGPGVTYHQLTHFMQCTEDHPHFEGLDCEIFEAPEPMTMALSVLVTIEMCNALNSLS- 918

Query: 91  EKKNIFK-GIHKNKLFLAIIGITIVLQL--IMVEFLKKFADTERLNWGQWAACIGIAAMS 147
           E +++ +     N   L  I +++ L    + V+ L      + L+  QW   + I+   
Sbjct: 919 ENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPV 978

Query: 148 WPIGFLFKCI 157
             +  + K I
Sbjct: 979 IGLDEILKFI 988
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028 Back     alignment and structure
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A Length = 1034 Back     alignment and structure
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885 Back     alignment and structure
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query171
3ixz_A1034 Potassium-transporting ATPase alpha; ION pump, H+, 99.96
2zxe_A1028 Na, K-ATPase alpha subunit; membrane protein, ION 99.93
3ar4_A995 Sarcoplasmic/endoplasmic reticulum calcium ATPase; 99.93
1mhs_A920 Proton pump, plasma membrane ATPase; ION transport 99.7
3b8c_A885 ATPase 2, plasma membrane-type; P-type ATPase, pro 98.95
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A Back     alignment and structure
Probab=99.96  E-value=3.4e-28  Score=222.11  Aligned_cols=162  Identities=14%  Similarity=0.182  Sum_probs=138.0

Q ss_pred             CchhhhhhhccCCCCccCcCCCCCCC-CCCCCcHHHHHHHH-HHHHHHHHHHHHHHHHhhhhcCC---------------
Q 036469            1 MDTLGALALATEQPTNDLMSKPPVGR-SEPLITKLMWRNLI-PQAIYQVAILLTLQFKGRSIFGV---------------   63 (171)
Q Consensus         1 ~D~~palaL~~ep~~~~~M~r~Pr~~-~~~ll~~~~~~~i~-~~g~~~~~~~~~~~~~~~~~~g~---------------   63 (171)
                      ||++||++|++||+|+++|+||||++ ++++++++++.++. ..|++++++++..|++.....|.               
T Consensus       824 ~d~~palal~~e~~~~~~m~~~Pr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  903 (1034)
T 3ixz_A          824 TDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVNEPLAAYSYFQIGAIQSFAGFTDYFTAMAQEGWFPLLCVGLRPQWENH  903 (1034)
T ss_pred             HHHHHHHHhhcCCCChhhhhCCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccccccccccccc
Confidence            68999999999999999999999998 79999999877654 45888888888877654321110               


Q ss_pred             ---c-----------------cchhhHHHHHHHHHHHHHHHHhhhcCCcccccc-ccccCHHHHHHHHHHHHHHHHHH--
Q 036469           64 ---Q-----------------ESAKDTMIFNTFVFCQIFNEFNARKLEKKNIFK-GIHKNKLFLAIIGITIVLQLIMV--  120 (171)
Q Consensus        64 ---~-----------------~~~a~T~~F~~lv~~q~~~~~~~R~~~~~~~~~-~~~~N~~l~~~~~~~~~l~~~~v--  120 (171)
                         +                 ...+||++|+++|++|++|+++||+. +.++|+ ++++|+++++++++++++|++++  
T Consensus       904 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~lv~~q~~~~~~~r~~-~~s~~~~~~~~N~~l~~~~~~~~~l~~~~~~~  982 (1034)
T 3ixz_A          904 HLQDLQDSYGQEWTFGQRLYQQYTCYTVFFISIEMCQIADVLIRKTR-RLSAFQQGFFRNRILVIAIVFQVCIGCFLCYC  982 (1034)
T ss_pred             cccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHHHhhccC-CCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence               0                 01389999999999999999999996 467775 78999999999999999998765  


Q ss_pred             HhhhhhhccccCChhHHHHHHHHHHHHHHHHHHHHhccccccc
Q 036469          121 EFLKKFADTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSGEQ  163 (171)
Q Consensus       121 ~~l~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~i~r~~~~  163 (171)
                      |+++.+|++.|+++.+|+++++++++++++.|++|++.|+.+.
T Consensus       983 p~~~~~f~~~~l~~~~w~~~~~~~~~~~~~~e~~K~~~r~~~~ 1025 (1034)
T 3ixz_A          983 PGMPNIFNFMPIRFQWWLVPMPFGLLIFVYDEIRKLGVRCCPG 1025 (1034)
T ss_pred             hhHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            6799999999999999999999999999999999999887653
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Back     alignment and structure
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Back     alignment and structure
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Back     alignment and structure
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 171
d1wpga4472 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATP 2e-27
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 472 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  104 bits (260), Expect = 2e-27
 Identities = 35/189 (18%), Positives = 61/189 (32%), Gaps = 32/189 (16%)

Query: 1   MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTL------- 53
            D L A AL    P  D+M +PP    EPLI+  ++   +    Y  A  +         
Sbjct: 277 TDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMY 336

Query: 54  -----------------------QFKGRSIFGVQESAKDTMIFNTFVFCQIFNEFNARKL 90
                                   F+G      +     TM  +  V  ++ N  N+   
Sbjct: 337 AEDGPGVTYHQLTHFMQCTEDHPHFEGLDCEIFEAPEPMTMALSVLVTIEMCNALNSLSE 396

Query: 91  EKKNIFKGIHKNKLFLAIIGITIVLQL--IMVEFLKKFADTERLNWGQWAACIGIAAMSW 148
            +  +      N   L  I +++ L    + V+ L      + L+  QW   + I+    
Sbjct: 397 NQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKLKALDLTQWLMVLKISLPVI 456

Query: 149 PIGFLFKCI 157
            +  + K I
Sbjct: 457 GLDEILKFI 465

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query171
d1wpga4472 Calcium ATPase, transmembrane domain M {Rabbit (Or 99.97
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.97  E-value=3e-31  Score=222.77  Aligned_cols=160  Identities=20%  Similarity=0.246  Sum_probs=140.9

Q ss_pred             CchhhhhhhccCCCCccCcCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC------------------
Q 036469            1 MDTLGALALATEQPTNDLMSKPPVGRSEPLITKLMWRNLIPQAIYQVAILLTLQFKGRSIFG------------------   62 (171)
Q Consensus         1 ~D~~palaL~~ep~~~~~M~r~Pr~~~~~ll~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~g------------------   62 (171)
                      +|++||++|+.||+|+|+|+||||+++|+++++.++.+++.+|..++++++..+++...+..                  
T Consensus       277 ~d~lpaiaL~~ep~d~~iM~~~Pr~~~~~li~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  356 (472)
T d1wpga4         277 TDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYAEDGPGVTYHQLTHFMQCTE  356 (472)
T ss_dssp             TTHHHHHHHTTCCCCSGGGGSCCCCTTCCSSCTHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCTTSGGGGTTTTSS
T ss_pred             hHHHHHHHHhcCCCchhhhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHhHHhhccC
Confidence            69999999999999999999999999999999999999999999999888887766532110                  


Q ss_pred             ------------CccchhhHHHHHHHHHHHHHHHHhhhcCCccccc-cccccCHHHHHHHHHHHHHHHHHH--Hhhhhhh
Q 036469           63 ------------VQESAKDTMIFNTFVFCQIFNEFNARKLEKKNIF-KGIHKNKLFLAIIGITIVLQLIMV--EFLKKFA  127 (171)
Q Consensus        63 ------------~~~~~a~T~~F~~lv~~q~~~~~~~R~~~~~~~~-~~~~~N~~l~~~~~~~~~l~~~~v--~~l~~~f  127 (171)
                                  .+..++||++|++++++|++|.+++|+. +.+++ .+.++|++++.++++++++|++++  |+++++|
T Consensus       357 ~~~~~~~~~~~~~~~~~a~T~~F~~lv~~q~~~~~~~rs~-~~s~~~~~~~~N~~l~~av~i~~~l~~~i~yiP~l~~vf  435 (472)
T d1wpga4         357 DHPHFEGLDCEIFEAPEPMTMALSVLVTIEMCNALNSLSE-NQSLMRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIF  435 (472)
T ss_dssp             STTTTCCSCGGGGGCHHHHHHHHHHHHHHHHHHHHTTSCS-SCCTTTSCGGGCHHHHHHHHHHHHHHHHHHHSTTTHHHH
T ss_pred             CcccccccchhhhhHhHHHHHHHHHHHHHHHHHHHHHhcC-CcchhhcCccccHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence                        0134689999999999999999999997 45666 478899999999999999998876  5799999


Q ss_pred             ccccCChhHHHHHHHHHHHHHHHHHHHHhccccc
Q 036469          128 DTERLNWGQWAACIGIAAMSWPIGFLFKCIPVSG  161 (171)
Q Consensus       128 ~~~~l~~~~w~~~~~~~~~~~~~~e~~K~i~r~~  161 (171)
                      ++.|+++.+|+++++.+++.+++.|++|++.||.
T Consensus       436 ~~~pL~~~~w~i~l~~~~~~~~~~El~K~~~R~~  469 (472)
T d1wpga4         436 KLKALDLTQWLMVLKISLPVIGLDEILKFIARNY  469 (472)
T ss_dssp             TCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999998754