Citrus Sinensis ID: 036470


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------
MDESSEEQQQQQPTAMKECMHKTKAIQFLGRTTPIILQNDNGPCPLLAICNVLLLRNNLNLSPDTGEISQEKLLSLVAERLIDSNSNVNNKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRRIDDFEFTPECAIFDLLDIPLYHGWIVDPQDYDTANAIGSKSYNAIMGELVALETMGGDCKSNSEEDCVDFAAATTATLGVPSPCLSKARSFDDSPRSVSDQQTLRKGDLEEEEELLRALKLSESDVPSSPGNSVLANVNGATMPVSSDESTCSNMDVPADSVHTLERRTVVESESFHQPESSISDKNGSFWEYCWGRSKFTLKADGSMKLDQPSKMESVAHNISKDLVEKKSVQKLVQIEETILFSPGKDTATVVETQVEISQGGKEVENEPTSTNVHEPVDNLSRCSTTEVSCLSVHNGDSDSSSGRVQLSDVPENFTSSVDGSEPIYEGEECILDSGTAMYEDREPVYEGEVILAEQADKSTLDACNVWSKDEITQQQGELIKSFLKNNANQLTFYGLFCLQDGLKERELCVFFRNNHFSTMFKYDGELYLLATDQGYINQPDLVWEKLNEVNGDTLFMTSNFNEFKVESHANDSWDEHGAMASTADYLAHYDTATHGGSDMNSDLQLAIALQQQEFEQQPQRPNVQQQQPPVTGSSKLITGPQVARASGRGSSSSSKSDGKSKDKCSIM
cccccccccccccccccccEEEEEEEEEcccccEEEEEcccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHcHHHHHHHccccccccEEEEEEccccccccccccccccccccccEEEEEcccccHHHHHHHccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccEEEEEEcccEEEEEEEcccEEEEEEccccccccccEEEEcccccccccccccccccccccccccccccccccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEc
ccccccccccccccccccEEEEEEEEEEcccccEEEEEccccccHHHHHHHHHHHcccccccccccEccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcHHccccccEEEEEcccccccccHHHHHHHHccccEEEEcccccccHHHHHHHccccHHHHHHHHHHHccccccHcccHHHHHHHHHHHHHHHcccccHHHHHHHcccccccccEEEEEEcccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccHccccccccccEEEcHHHHHHcccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEcccEEEEEEEcccccccccEEEEEEccccccccEEccccEEccccccccccccHHccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEc
MDESSEEQQQQQPTAMKECMHKTKAIQflgrttpiilqndngpcplLAICNVLLLrnnlnlspdtgeiSQEKLLSLVAERLIdsnsnvnnkdagyvenQQQNIADAIDLLprlatgidvnikfrriddfeftpecaifdlldiplyhgwivdpqdydtanaigskSYNAIMGELVALEtmggdcksnseedcVDFAAAttatlgvpspclskarsfddsprsvsdqqtlrkgDLEEEEELLRALKLsesdvpsspgnsvlanvngatmpvssdestcsnmdvpadsvhtlerrtvvesesfhqpessisdkngsfweycwgrskftlkadgsmkldqpskmeSVAHNISKDLVEKKSVQKLVQIEETilfspgkdtatVVETQVEIsqggkeveneptstnvhepvdnlsrcsttevsclsvhngdsdsssgrvqlsdvpenftssvdgsepiyegeecildsgtamyedrepvyegEVILAEQadkstldacnvwskdEITQQQGELIKSFLKNNANQLTFYGLFCLQDGLKERELCVFFRNNHFSTMFKYDGELYLLATdqgyinqpdLVWEKLnevngdtlfmtsnfnefkveshandswdehgamasTADYLAhydtathggsdmnSDLQLAIALQQQEfeqqpqrpnvqqqqppvtgssklitgpqvarasgrgsssssksdgkskdkcsim
mdesseeqqqQQPTAMKECMHKTKAIQFLGRTTPIILQNDNGPCPLLAICNVLLLRNNLNLSPDTGEISQEKLLSLVAERLIDSNSNVNNKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRRIDDFEFTPECAIFDLLDIPLYHGWIVDPQDYDTANAIGSKSYNAIMGELVALETMGGDCKSNSEEDCVDFAAAttatlgvpspCLSKarsfddsprsvsdqqtlrkgdleEEEELLRALKlsesdvpsspgnsvlanvNGATMPVSSDESTCSNMDVPADSVHTLERRTVvesesfhqpessisdkngsfWEYCWGRSKFTLKADGSMKLDQPSKMESVAHNISKDLVEKKSVQKLVQIEEtilfspgkdtaTVVETQVEIsqggkeveneptstnvhepvdnlsrCSTTEVSCLSVhngdsdsssgrvqlsdvPENFtssvdgsepiyEGEECILDSGTAMYEDREPVYEGEVILAEQADKSTLDACNVWSKDEITQQQGELIKSFLKNNANQLTFYGLFCLQDGLKERELCVFFRNNHFSTMFKYDGELYLLATDQGYINQPDLVWEKLNEVNGDTLFMTSNFNEFKVESHANDSWDEHGAMASTADYLAHYDTATHGGSDMNSDLQLAIALQQQEFEQQPqrpnvqqqqppvtgssklitgpqvarasgrgsssssksdgkskdkcsim
MDesseeqqqqqPTAMKECMHKTKAIQFLGRTTPIILQNDNGPCPLLAICnvlllrnnlnlSPDTGEISQEKLLSLVAERLIDSNSNVNNKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRRIDDFEFTPECAIFDLLDIPLYHGWIVDPQDYDTANAIGSKSYNAIMGELVALETMGGDCKSNSEEDCVDFAAATTATLGVPSPCLSKARSFDDSPRSVSDQQTlrkgdleeeeellralklsesDVPSSPGNSVLANVNGATMPVSSDESTCSNMDVPADSVHTLERRTVVESESFHQPESSISDKNGSFWEYCWGRSKFTLKADGSMKLDQPSKMESVAHNISKDLVEKKSVQKLVQIEETILFSPGKDTATVVETQVEISQGGKEVENEPTSTNVHEPVDNLSRCSTTEVSCLSVHNGDSDSSSGRVQLSDVPENFTSSVDGSEPIYEGEECILDSGTAMYEDREPVYEGEVILAEQADKSTLDACNVWSKDEITQQQGELIKSFLKNNANQLTFYGLFCLQDGLKERELCVFFRNNHFSTMFKYDGELYLLATDQGYINQPDLVWEKLNEVNGDTLFMTSNFNEFKVESHANDSWDEHGAMASTADYLAHYDTATHGGSDMNSDlqlaialqqqefeqqpqrpnvqqqqppVTGSSKLITGPQVarasgrgsssssksdgkskdkCSIM
*********************KTKAIQFLGRTTPIILQNDNGPCPLLAICNVLLLRNNLNLSPDTGEISQEKLLSLVAERLID*********AGYVENQQQNIADAIDLLPRLATGIDVNIKFRRIDDFEFTPECAIFDLLDIPLYHGWIVDPQDYDTANAIGSKSYNAIMGELVALETMGGDCK****EDCVDFAAATTATLGV************************************************************************************************************SFWEYCWGRSKFTL******************************VQKLVQIEETILFSPG***ATV**************************************************************************YEGEECILDSGTAMYEDREPVYEGEVILAEQADKSTLDACNVWSKDEITQQQGELIKSFLKNNANQLTFYGLFCLQDGLKERELCVFFRNNHFSTMFKYDGELYLLATDQGYINQPDLVWEKLNEVNGDTLFMTSNFNEFKVESHANDSWDEHGAMASTADYLAHYDTA***************************************************************************
**********************TKAIQFLGRTTPIILQNDNGPCPLLAICNVLLLRNNLNLSPDTGEISQEKLLSLVAERLIDSNSN**********NQQQNIADAIDLLPRLATGIDVNIKFRRIDDFEFTPECAIFDLLDIPLYHGWIVDPQDYDTANAIGSKSYNAIMGELVA****************VDFAAATTATLG****************************************KLSESDVPS****************************************************************************************************************************************************************************************************SEPIYEGEECILDSGTAMYEDREPVYEGEVIL**********************QQGELIKSFLKNNANQLTFYGLFCLQDGLKERELCVFFRNNHFSTMFKYDGELYLLATDQGYINQPDLVWEKLNEVNGDTLFMTSNFN*******************************************LAI*******************************************************KCSIM
******************CMHKTKAIQFLGRTTPIILQNDNGPCPLLAICNVLLLRNNLNLSPDTGEISQEKLLSLVAERLIDSNSNVNNKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRRIDDFEFTPECAIFDLLDIPLYHGWIVDPQDYDTANAIGSKSYNAIMGELVALETMGGDCKSNSEEDCVDFAAATTATLGVPSPCLSK************************EEELLRALKLS********GNSVLANVNGATM***********MDVPADSVHTLERRTV*************SDKNGSFWEYCWGRSKFTLKADGSMKLDQPSKMESVAHNISKDLVEKKSVQKLVQIEETILFSPGKDTATVVETQV*******************EPVDNLSRCSTTEVSCLS***************SDVPENFTSSVDGSEPIYEGEECILDSGTAMYEDREPVYEGEVILAEQADKSTLDACNVWSKDEITQQQGELIKSFLKNNANQLTFYGLFCLQDGLKERELCVFFRNNHFSTMFKYDGELYLLATDQGYINQPDLVWEKLNEVNGDTLFMTSNFNEFKVESHANDSWDEHGAMASTADYLAHYDTATHGGSDMNSDLQLAIALQQQ*********************SKLIT*****************************
***************MKECMHKTKAIQFLGRTTPIILQNDNGPCPLLAICNVLLLRNNLNLSPDTGEISQEKLLSLVAERLIDSNSNVNNKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRRIDDFEFTPECAIFDLLDIPLYHGWIVDPQDYDTANAIGSKSYNAIMGELVALETMGGDCKSNSEEDCVDFAAATTATLGVPSPCLSKARSFDDSPRSVSDQQTLRKGDLEEEEELLRALKLSESDV*****************************************************************************************************************************************************************************************************GSEPIYEGEECILDSGTAMYEDREPVYEGEVILAEQADKSTLDACNVWSKDEITQQQGELIKSFLKNNANQLTFYGLFCLQDGLKERELCVFFRNNHFSTMFKYDGELYLLATDQGYINQPDLVWEKLNEVNGDTLFMTSNFNEFKV***********************************SDLQLAIALQQQEFEQ***************************************************
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDESSEEQQQQQPTAMKECMHKTKAIQFLGRTTPIILQNDNGPCPLLAICNVLLLRNNLNLSPDTGEISQEKLLSLVAERLIDSNSNVNNKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRRIDDFEFTPECAIFDLLDIPLYHGWIVDPQDYDTANAIGSKSYNAIMGELVALETMGGDCKSNSEEDCVDFAAATTATLGVPSPCLSKARSFDDSPRSVSDQQTLRKGDLEEEEELLRALKLSESDVPSSPGNSVLANVNGATMPVSSDESTCSNMDVPADSVHTLERRTVVESESFHQPESSISDKNGSFWEYCWGRSKFTLKADGSMKLDQPSKMESVAHNISKDLVEKKSVQKLVQIEETILFSPGKDTATVVETQVEISQGGKEVENEPTSTNVHEPVDNLSRCSTTEVSCLSVHNGDSDSSSGRVQLSDVPENFTSSVDGSEPIYEGEECILDSGTAMYEDREPVYEGEVILAEQADKSTLDACNVWSKDEITQQQGELIKSFLKNNANQLTFYGLFCLQDGLKERELCVFFRNNHFSTMFKYDGELYLLATDQGYINQPDLVWEKLNEVNGDTLFMTSNFNEFKVESHANDSWDEHGAMASTADYLAHYDTATHGGSDMNSDLQLAIALQQQEFEQQPQRPNVQQQQPPVTGSSKLITGPQVARASGRGSSSSSKSDGKSKDKCSIM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query697 2.2.26 [Sep-21-2011]
Q76LS9468 Protein FAM63A OS=Mus mus yes no 0.281 0.418 0.404 2e-37
Q5BJQ2482 Protein FAM63A OS=Rattus yes no 0.245 0.354 0.426 3e-37
Q2KJ22469 Protein FAM63A OS=Bos tau yes no 0.232 0.345 0.426 1e-36
Q8N5J2469 Protein FAM63A OS=Homo sa yes no 0.232 0.345 0.432 3e-36
Q5R7G8469 Protein FAM63A OS=Pongo a yes no 0.232 0.345 0.432 7e-36
A3KQS4520 Protein FAM63A OS=Danio r yes no 0.219 0.294 0.432 8e-36
Q2KI23630 Protein FAM63B OS=Bos tau no no 0.222 0.246 0.447 1e-29
Q8NBR6621 Protein FAM63B OS=Homo sa no no 0.219 0.246 0.446 1e-29
Q6PDI6601 Protein FAM63B OS=Mus mus no no 0.222 0.257 0.434 7e-29
P53155381 Uncharacterized protein Y yes no 0.136 0.249 0.437 6e-14
>sp|Q76LS9|FA63A_MOUSE Protein FAM63A OS=Mus musculus GN=Fam63a PE=1 SV=1 Back     alignment and function desciption
 Score =  157 bits (398), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/215 (40%), Positives = 123/215 (57%), Gaps = 19/215 (8%)

Query: 11  QQPTAMKECMHKTKAIQFLGRTTPIILQNDNGPCPLLAICNVLLLRNNLNLSPDTGEISQ 70
           QQP     C+   K I + G  TPII Q+ NGPCPLLAI N+L L+  + L P    I+ 
Sbjct: 107 QQPELDFYCV---KWIPWKGERTPIITQSTNGPCPLLAIMNILFLQWKVKLPPQKEVITS 163

Query: 71  EKLLSLVAERLIDSNSNVNNKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRRIDDFE 130
           ++LL+ +   L+        K  G   N QQN+ DA+ +LP+LATG+DVN++F  + DFE
Sbjct: 164 DELLTHLGNCLLSIKPQ--EKSEGLQLNFQQNVDDAMTVLPKLATGLDVNVRFTGVSDFE 221

Query: 131 FTPECAIFDLLDIPLYHGWIVDPQDYDTANAIGSKSYNAIMGELVALETMGGDCKSNSEE 190
           +TPEC+IFDLL IPLYHGW+VDPQ  +  +A+G  SYN ++ +++        CK +S+ 
Sbjct: 222 YTPECSIFDLLGIPLYHGWLVDPQSPEAVSAVGKLSYNQLVEKIIT-------CKHSSDS 274

Query: 191 DCV-------DFAAATTATLGVPSPCLSKARSFDD 218
           + V        F   T A L     C   A + +D
Sbjct: 275 NLVTEGLVAEQFLETTAAQLTYHGLCELTAAATED 309





Mus musculus (taxid: 10090)
>sp|Q5BJQ2|FA63A_RAT Protein FAM63A OS=Rattus norvegicus GN=Fam63a PE=2 SV=1 Back     alignment and function description
>sp|Q2KJ22|FA63A_BOVIN Protein FAM63A OS=Bos taurus GN=FAM63A PE=2 SV=1 Back     alignment and function description
>sp|Q8N5J2|FA63A_HUMAN Protein FAM63A OS=Homo sapiens GN=FAM63A PE=1 SV=2 Back     alignment and function description
>sp|Q5R7G8|FA63A_PONAB Protein FAM63A OS=Pongo abelii GN=FAM63A PE=2 SV=1 Back     alignment and function description
>sp|A3KQS4|FA63A_DANRE Protein FAM63A OS=Danio rerio GN=fam63a PE=3 SV=1 Back     alignment and function description
>sp|Q2KI23|FA63B_BOVIN Protein FAM63B OS=Bos taurus GN=FAM63B PE=2 SV=1 Back     alignment and function description
>sp|Q8NBR6|FA63B_HUMAN Protein FAM63B OS=Homo sapiens GN=FAM63B PE=1 SV=2 Back     alignment and function description
>sp|Q6PDI6|FA63B_MOUSE Protein FAM63B OS=Mus musculus GN=Fam63b PE=1 SV=1 Back     alignment and function description
>sp|P53155|YGI2_YEAST Uncharacterized protein YGL082W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YGL082W PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query697
255537233730 conserved hypothetical protein [Ricinus 0.956 0.913 0.669 0.0
225426737720 PREDICTED: uncharacterized protein LOC10 0.989 0.958 0.632 0.0
356495643726 PREDICTED: uncharacterized protein LOC10 0.969 0.931 0.644 0.0
224058621686 predicted protein [Populus trichocarpa] 0.932 0.947 0.630 0.0
357481777737 Protein FAM63A [Medicago truncatula] gi| 0.974 0.921 0.631 0.0
297742620662 unnamed protein product [Vitis vinifera] 0.941 0.990 0.633 0.0
356540472723 PREDICTED: uncharacterized protein LOC10 0.969 0.934 0.645 0.0
449452500719 PREDICTED: uncharacterized protein LOC10 0.952 0.923 0.625 0.0
18413696682 uncharacterized protein [Arabidopsis tha 0.926 0.947 0.537 0.0
297813691687 hypothetical protein ARALYDRAFT_490003 [ 0.905 0.918 0.536 1e-180
>gi|255537233|ref|XP_002509683.1| conserved hypothetical protein [Ricinus communis] gi|223549582|gb|EEF51070.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  841 bits (2173), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/702 (66%), Positives = 533/702 (75%), Gaps = 35/702 (4%)

Query: 19  CMHKTKAIQFLGRTTPIILQNDNGPCPLLAICNVLLLRNNLNLSPDTGEISQEKLLSLVA 78
           C+HKTK IQFLGRT PI+LQNDNGPCPLLAICN+LLLRNNLNLSPD  E+SQEKLLSLVA
Sbjct: 41  CVHKTKTIQFLGRTAPIVLQNDNGPCPLLAICNILLLRNNLNLSPDIAEVSQEKLLSLVA 100

Query: 79  ERLIDSNSNVNNKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRRIDDFEFTPECAIF 138
           E LIDSNSNVNNKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRRIDDFEFTPECAIF
Sbjct: 101 EHLIDSNSNVNNKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRRIDDFEFTPECAIF 160

Query: 139 DLLDIPLYHGWIVDPQDYDTANAIGSKSYNAIMGELVALET--MGGDCKSNSEEDCVDFA 196
           DLLDIPLYHGWIVDPQDYDTA AIGSKSYNAIMGELVALET  M G+ K+N+EED VDF 
Sbjct: 161 DLLDIPLYHGWIVDPQDYDTAIAIGSKSYNAIMGELVALETQVMEGESKNNAEEDSVDFV 220

Query: 197 AATTATLGVPSPCLSKARSFDDSPRSVSDQQTLRKGDLEEEEELLRALKLSESDVPSSPG 256
           AATTATLGVPSPCLSK RSFDDSP SVSD Q+LRKGDLEEE ELL ALKLSE+++P+S G
Sbjct: 221 AATTATLGVPSPCLSKTRSFDDSPHSVSDNQSLRKGDLEEEAELLMALKLSEAELPTSTG 280

Query: 257 NSVLANVNGATMPVSSDESTCSNMDVPADSVHTLERRTVV---------ESESFHQPESS 307
           N ++A+V+   +  +SD+ T S   VP  SV  L+              +  +    E+ 
Sbjct: 281 NMLVADVSEGVLSAASDKHTSSKESVPVSSVDMLKGHVGTAHGDTALSNDHNNLKSVETL 340

Query: 308 ISDKNGSFWEYCWGRSKFTLKA----------DGSMKLDQPSKMESVAHNISKDLVEKKS 357
           + D   S       +   TL            D S   D  +  ES  HN S D+ +  +
Sbjct: 341 LGDMTCSPSMTDLSKPMETLPGEITGSPSKTTDQSNLPDLSTYKESREHNASTDIAKNCN 400

Query: 358 VQKLVQIEETILFSPGKDTATVVETQVEISQGGKEVENEPTS-TNVHEPVDNLSRCSTTE 416
           ++  VQIE+T+  S  ++     E  +  S+GG+ V++   S  NVHE  D  S     E
Sbjct: 401 IKMSVQIEDTLTQS--ENFVLANEDGIVFSRGGEMVKSPLESIANVHEAADISSGRDPAE 458

Query: 417 VSCLSVHNGDSDSSSGRVQLSDVPENFTSSVDGSEPIYEGEECILDSGTAMYEDREPVYE 476
            S LS+ N DSDSSSGR+Q  DV E FTSSVDGSEPIYEGEECILDSGTA +EDREP+YE
Sbjct: 459 ASGLSMPNPDSDSSSGRLQNVDVTETFTSSVDGSEPIYEGEECILDSGTATFEDREPMYE 518

Query: 477 GEVILAEQADKSTLDACNVWSKDEITQQQGELIKSFLKNNANQLTFYGLFCLQDGLKERE 536
           GEVILAEQADKS      V  KDEIT QQGELIK+FLKNNA+QLTFYGLFCLQDGLKERE
Sbjct: 519 GEVILAEQADKS------VRLKDEITPQQGELIKNFLKNNASQLTFYGLFCLQDGLKERE 572

Query: 537 LCVFFRNNHFSTMFKYDGELYLLATDQGYINQPDLVWEKLNEVNGDTLFMTSNFNEFKVE 596
           LCVFFRNNHFSTMFKYDGELYLLATDQGY+NQPDLVWEKLNEVNGDTLFMT NF EFKVE
Sbjct: 573 LCVFFRNNHFSTMFKYDGELYLLATDQGYLNQPDLVWEKLNEVNGDTLFMTGNFKEFKVE 632

Query: 597 SHANDSWDEHGAMASTADYLAHYDTATHGGSDMNSDLQLAIAL-QQQEFEQQPQRPNVQQ 655
           +  ND+W+EH AMASTADY+A +D A   G D+NSDLQLAIAL QQ+  +QQPQR NVQQ
Sbjct: 633 NQGNDTWNEHNAMASTADYIASFDNAAQAGLDINSDLQLAIALQQQEFEQQQPQRSNVQQ 692

Query: 656 QQPPVTGSSKLITGPQVARASGRGSSSSSKSDGKSKDKCSIM 697
              PV+G+S+L+TGPQV R+S    SSSS+ + KSKDKC +M
Sbjct: 693 ---PVSGNSRLVTGPQVQRSS-GKYSSSSRPEAKSKDKCIVM 730




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426737|ref|XP_002275737.1| PREDICTED: uncharacterized protein LOC100263264 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356495643|ref|XP_003516684.1| PREDICTED: uncharacterized protein LOC100808340 [Glycine max] Back     alignment and taxonomy information
>gi|224058621|ref|XP_002299570.1| predicted protein [Populus trichocarpa] gi|222846828|gb|EEE84375.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357481777|ref|XP_003611174.1| Protein FAM63A [Medicago truncatula] gi|355512509|gb|AES94132.1| Protein FAM63A [Medicago truncatula] Back     alignment and taxonomy information
>gi|297742620|emb|CBI34769.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356540472|ref|XP_003538713.1| PREDICTED: uncharacterized protein LOC100797239 [Glycine max] Back     alignment and taxonomy information
>gi|449452500|ref|XP_004143997.1| PREDICTED: uncharacterized protein LOC101220291 [Cucumis sativus] Back     alignment and taxonomy information
>gi|18413696|ref|NP_567383.1| uncharacterized protein [Arabidopsis thaliana] gi|21553726|gb|AAM62819.1| unknown [Arabidopsis thaliana] gi|110738711|dbj|BAF01280.1| hypothetical protein [Arabidopsis thaliana] gi|332657659|gb|AEE83059.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297813691|ref|XP_002874729.1| hypothetical protein ARALYDRAFT_490003 [Arabidopsis lyrata subsp. lyrata] gi|297320566|gb|EFH50988.1| hypothetical protein ARALYDRAFT_490003 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query697
TAIR|locus:2137050682 AT4G11860 "AT4G11860" [Arabido 0.456 0.466 0.536 4.1e-147
MGI|MGI:1922257468 Fam63a "family with sequence s 0.230 0.344 0.423 7.3e-53
UNIPROTKB|Q8N5J2469 FAM63A "Protein FAM63A" [Homo 0.230 0.343 0.411 3.3e-52
RGD|1559660482 Fam63a "family with sequence s 0.230 0.334 0.411 1e-51
UNIPROTKB|Q8NBR6621 FAM63B "Protein FAM63B" [Homo 0.222 0.249 0.403 2.4e-49
MGI|MGI:2443086601 Fam63b "family with sequence s 0.222 0.257 0.397 9.2e-49
RGD|1311456599 Fam63b "family with sequence s 0.222 0.258 0.397 1.1e-48
DICTYBASE|DDB_G0281445565 fam63B "DUF544 family protein" 0.137 0.169 0.454 4.7e-39
TAIR|locus:2127223524 AT4G22960 "AT4G22960" [Arabido 0.322 0.429 0.325 1.2e-38
DICTYBASE|DDB_G0269770395 fam63A "DUF544 family protein" 0.258 0.455 0.331 3.6e-38
TAIR|locus:2137050 AT4G11860 "AT4G11860" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 834 (298.6 bits), Expect = 4.1e-147, Sum P(2) = 4.1e-147
 Identities = 178/332 (53%), Positives = 216/332 (65%)

Query:    14 TAMKECMHKTKAIQFLGRTTPIILQNDNGPCPLLAICXXXXXXXXXXXSPDTGEISQEKL 73
             T  +E ++KTK+IQFLGRTTPIILQN+NGPCPLLAIC           +PD  E+SQE+L
Sbjct:    31 TTEEEILYKTKSIQFLGRTTPIILQNENGPCPLLAICNVLLLRNNLNLNPDCYEVSQERL 90

Query:    74 LSLVAERLIDSNSNVNNKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRRIDDFEFTP 133
             +SLV +RLIDSNS VNNKD GY+ENQQQNIADAIDLLPRL TGIDVNIKFRRIDDFEFTP
Sbjct:    91 MSLVVDRLIDSNSKVNNKDEGYIENQQQNIADAIDLLPRLTTGIDVNIKFRRIDDFEFTP 150

Query:   134 ECAIFDLLDIPLYHGWIVDPQDYDTANAIGSKSYNAIMGELVALETMGGDCKS--NSEED 191
             ECAIFDLLDIPLYHGWIVDPQD + ANAIGSKSYNA+MGELVALET   + +   N  ED
Sbjct:   151 ECAIFDLLDIPLYHGWIVDPQDVEAANAIGSKSYNALMGELVALETQNVEAQGDQNPGED 210

Query:   192 CVDFAAATTATLGVPSPCLSKARSFDDSPRSVSDQQTXXXXXXXXXXXXXXXXXXXXXDV 251
              VDFAAATTA LGVPSPCLSK RSFDDSP + ++ +                       +
Sbjct:   211 SVDFAAATTAVLGVPSPCLSKTRSFDDSPPAAAELRRMRKGDLEEETELLQAL-----QL 265

Query:   252 PSSPGNSVLANVNGATMPVSSDESTCSNMDVPADSVHTLERRTVVESESFHQPESSISDK 311
                 GN    N NG +   ++ +S  +  D    S H      + + + F   +   S+ 
Sbjct:   266 SQGQGNDPTPNTNGDS---TNQDSAFTFSDASPTSTHITN---ISQLDQFKTDDDKASEN 319

Query:   312 NGSFWEYCWGRSKFTLKADGSMKLDQPSKMES 343
             +G+  +     +  T K++  +  DQ S  +S
Sbjct:   320 DGNMIKVGKFPTTITTKSE-DLNHDQLSSKQS 350


GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
MGI|MGI:1922257 Fam63a "family with sequence similarity 63, member A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N5J2 FAM63A "Protein FAM63A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1559660 Fam63a "family with sequence similarity 63, member A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q8NBR6 FAM63B "Protein FAM63B" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2443086 Fam63b "family with sequence similarity 63, member B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311456 Fam63b "family with sequence similarity 63, member B" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281445 fam63B "DUF544 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
TAIR|locus:2127223 AT4G22960 "AT4G22960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0269770 fam63A "DUF544 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
gw1.I.9213.1
hypothetical protein (683 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query697
pfam04424121 pfam04424, DUF544, Protein of unknown function (DU 3e-48
>gnl|CDD|113205 pfam04424, DUF544, Protein of unknown function (DUF544) Back     alignment and domain information
 Score =  165 bits (419), Expect = 3e-48
 Identities = 60/128 (46%), Positives = 84/128 (65%), Gaps = 7/128 (5%)

Query: 50  CNVLLLRNNLNLSPDTGEISQEKLLSLVAERLIDSNSNVNNKDAGYVENQQQNIADAIDL 109
            NVL+L+  + L P   +++ E+L+ L+ + L+              EN  QNI D +D+
Sbjct: 1   ANVLILKPKVTLPPKKEQVTLEELMELLVDVLLQRKPK-------LAENFDQNIQDLMDI 53

Query: 110 LPRLATGIDVNIKFRRIDDFEFTPECAIFDLLDIPLYHGWIVDPQDYDTANAIGSKSYNA 169
           LP+L TG+DVN KF  IDDFE+TPEC+IFDLL +PLYHGW+VDPQD +   AIG+ SYN 
Sbjct: 54  LPKLHTGLDVNPKFNGIDDFEYTPECSIFDLLGVPLYHGWLVDPQDVEIVEAIGNLSYNE 113

Query: 170 IMGELVAL 177
           ++ +L  L
Sbjct: 114 LVEKLTQL 121


Eukaryotic protein of unknown function. Length = 121

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 697
KOG2427391 consensus Uncharacterized conserved protein [Funct 100.0
PF04424121 DUF544: Protein of unknown function (DUF544) ; Int 100.0
>KOG2427 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
Probab=100.00  E-value=1.5e-69  Score=573.32  Aligned_cols=374  Identities=40%  Similarity=0.627  Sum_probs=276.9

Q ss_pred             hcCCCCCCCceeeEEEEEECCeeceeeecCCCCCCcHHHHHHHHHhcCcCCCCCCcccccHHHHHHHHHHHHhccCCCCC
Q 036470           10 QQQPTAMKECMHKTKAIQFLGRTTPIILQNDNGPCPLLAICNVLLLRNNLNLSPDTGEISQEKLLSLVAERLIDSNSNVN   89 (697)
Q Consensus        10 ~~~~~~~~~~~y~VK~I~f~Gr~tpIllQNeNGPCPLIAI~NVLLLr~~I~L~pd~~~VS~e~Ll~lV~d~Ll~~~~~~~   89 (697)
                      ..+.+++.+.+|++|.|.|.|++++|||||+|||||||||||||+|++.+.+++++-.++...|..++.+.|.+...-..
T Consensus         4 ~~s~~~~~~~~~~tk~i~~~g~~~~IllQn~nGpCpLiAl~NvLilk~~~~~~~~~~~~~~~~~~~lt~~~l~~~~~~~~   83 (391)
T KOG2427|consen    4 DNSRPPPMEIFFKTKKIQFNGQRCNILLQNENGPCPLIALCNVLILKPNLTRPSNYLLVSVNDLPNLTLDELIEALAYND   83 (391)
T ss_pred             ccCCCCccceeeeecccccCceeeeEEEecCCCCcchHHHhHHHhccccccccchhhhhhhhccchhhHHHHHHhhhhhh
Confidence            35678899999999999999999999999999999999999999999999999999999998888888888887654322


Q ss_pred             CCcchhhhhhhhcHHHHHhhccccccCccccccccccCCCccCCccccccccCCCeeeEeecCCCChhhHhhhcCCCHHH
Q 036470           90 NKDAGYVENQQQNIADAIDLLPRLATGIDVNIKFRRIDDFEFTPECAIFDLLDIPLYHGWIVDPQDYDTANAIGSKSYNA  169 (697)
Q Consensus        90 ~~d~~~~~n~e~ni~dai~~LP~L~tGLdVNprF~~i~~FE~T~E~~LFdLl~IpLvHGWLvDPqD~e~~~aig~~SYN~  169 (697)
                      .++.+    +..++.|+|.+||+|++||||||+|++|++||||+||+|||||+||||||||+||++.+.+.+||.+|||.
T Consensus        84 ~kn~~----~~~~~~dl~~iL~~L~~GldvN~~f~~i~dFE~tpe~sIF~Ll~V~LyHGWlvDpq~~e~~~ai~~~Syn~  159 (391)
T KOG2427|consen   84 EKNIR----ACGNIQDLMDILPRLHTGLDVNPKFNGIDDFEFTPELSIFDLLGVPLYHGWLVDPQDVEIVDAIGNRSYNE  159 (391)
T ss_pred             ccccc----ccccHHHHHHHHHHHHhccCcceeeeccccccccchhhhhhhcCCcceeeeecCCccHHHHHHhcccchhh
Confidence            22211    55679999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHhhhccCCCCCCCCcchhhhHHhhhhhhcCCCCCccccCccCCCCCCCcchhhhhccCChHHHHHHHHHhhccCC
Q 036470          170 IMGELVALETMGGDCKSNSEEDCVDFAAATTATLGVPSPCLSKARSFDDSPRSVSDQQTLRKGDLEEEEELLRALKLSES  249 (697)
Q Consensus       170 LvekLv~~~~~~~~~k~~~~~~~~d~~a~~~a~~gvpsp~~s~~~sf~~~~~s~~~~~~~rkgd~ee~~~l~~~l~ls~~  249 (697)
                      +...++..                                                   .+++                 
T Consensus       160 ~~~~~tq~---------------------------------------------------ve~~-----------------  171 (391)
T KOG2427|consen  160 LETLLTQL---------------------------------------------------VEKQ-----------------  171 (391)
T ss_pred             hhhhHHHH---------------------------------------------------HHHh-----------------
Confidence            77111110                                                   0000                 


Q ss_pred             CCCCCCCCCcccccCCCCCCccCCCCCCCCCCCCCCcccccccccccccccccCCCCCCCCCCCCcccccccCCcccccc
Q 036470          250 DVPSSPGNSVLANVNGATMPVSSDESTCSNMDVPADSVHTLERRTVVESESFHQPESSISDKNGSFWEYCWGRSKFTLKA  329 (697)
Q Consensus       250 e~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~  329 (697)
                                    .+.                                     .          +.|            
T Consensus       172 --------------~~~-------------------------------------~----------~~E------------  178 (391)
T KOG2427|consen  172 --------------CGC-------------------------------------A----------STE------------  178 (391)
T ss_pred             --------------ccc-------------------------------------c----------cch------------
Confidence                          000                                     0          000            


Q ss_pred             CCCccCCCCCcccccccccchhhhhhhchhhhhhhhhhhccCCCCCcccccchhhhcccCCccccCCCCCCCCCCCCCCc
Q 036470          330 DGSMKLDQPSKMESVAHNISKDLVEKKSVQKLVQIEETILFSPGKDTATVVETQVEISQGGKEVENEPTSTNVHEPVDNL  409 (697)
Q Consensus       330 d~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (697)
                                                                                                      
T Consensus       179 --------------------------------------------------------------------------------  178 (391)
T KOG2427|consen  179 --------------------------------------------------------------------------------  178 (391)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCcccccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCcccCcchhccCCCCccCCCCccccchhhhhhhccccc
Q 036470          410 SRCSTTEVSCLSVHNGDSDSSSGRVQLSDVPENFTSSVDGSEPIYEGEECILDSGTAMYEDREPVYEGEVILAEQADKST  489 (697)
Q Consensus       410 ~~~~~~~~~~~s~~~~~s~~~~~~~~~~d~~~~~~~~~~~~ep~yegee~~~~~~~~~~~~~e~vyEge~vlae~ad~~~  489 (697)
                                                                          ++        +.      +         
T Consensus       179 ----------------------------------------------------~s--------~~------i---------  183 (391)
T KOG2427|consen  179 ----------------------------------------------------NS--------ED------V---------  183 (391)
T ss_pred             ----------------------------------------------------hh--------hh------h---------
Confidence                                                                00        00      0         


Q ss_pred             ccccccccccchhHHHHHHHHHHHhcCCCcccHHHHHHHHhcCCCCceEEEEecCceeeEeeeCCeEEEEeccccccCCC
Q 036470          490 LDACNVWSKDEITQQQGELIKSFLKNNANQLTFYGLFCLQDGLKERELCVFFRNNHFSTMFKYDGELYLLATDQGYINQP  569 (697)
Q Consensus       490 ~~~~~~~~~~~~t~~q~~~i~~FL~~saTQLT~~GL~~L~~~l~~~~~aVfFRNnHFsTl~K~~~~Ly~LVTD~gy~~~~  569 (697)
                                   .+.+.....|+++++||||+|||..|++.+++|+++|+|||+||+||||+.++||+||||.||.+++
T Consensus       184 -------------~s~~~~~~~f~~~s~tqlt~~Gl~~l~e~~~egel~V~frn~hfst~~k~~~~~~~lvtd~~~~~~~  250 (391)
T KOG2427|consen  184 -------------LSDCLMLESFLDESATQLTEHGLLRLREIVKEGELVVVFRNNHFSTMTKNPDELYLLVTDDGFLNEE  250 (391)
T ss_pred             -------------hhHHHHHHHhhccchHHHHHhhhhhhhhhhcCCeEEEEEehhhcccccCCCCceeEEEecccccccc
Confidence                         0112356699999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEcccccCC-cceecCCceeccccCCC---CCCcccc-cccccchhhhhcccccC----CCCCCCccHHHHHHHHh
Q 036470          570 DLVWEKLNEVNGD-TLFMTSNFNEFKVESHA---NDSWDEH-GAMASTADYLAHYDTAT----HGGSDMNSDLQLAIALQ  640 (697)
Q Consensus       570 ~iVWEsL~~V~Gd-~~f~~gdF~~~~~~~~~---~~~~~~~-~~~~~~~dyl~~~~~~~----q~~~~~~sD~~LA~~LQ  640 (697)
                      +||||++.+|||+ ..||+|+|.+.......   ++..... .....+.+|......+.    ...++..+|.++|++||
T Consensus       251 ~~~wes~~~vdg~~~~~~~~~~~~~~~~~~~~~~~~~s~s~it~~~~D~~~~~~~s~q~~~~~~dv~~~~sd~e~a~~~~  330 (391)
T KOG2427|consen  251 DIVWESLHSVDGDCDVFFTGEFDAASGNPETTNSSGESESKITQKKEDQNYGKLLSKQEESETDDVSQIVSDKELAKKLQ  330 (391)
T ss_pred             cccceecccccCccceecCCCccccccCCCCccCCCCccccccccccCccccchhhhhhcccccCcccccCcHhHhhccC
Confidence            9999999999998 79999999877543221   1000000 00111122222111110    12256899999999999


Q ss_pred             HHHHHhcCCCCCcccCCCCCCCCCccccCC---ccc-ccCCCCCCC-CCCCCCCCCCCcccC
Q 036470          641 QQEFEQQPQRPNVQQQQPPVTGSSKLITGP---QVA-RASGRGSSS-SSKSDGKSKDKCSIM  697 (697)
Q Consensus       641 qeEde~~~~~~~~~~qq~~~~~~~~~~~~~---~~~-~~~~r~~~~-~~r~~~k~K~~CiiM  697 (697)
                      ++|.+|+....+. ..++.+-+.+..++..   ... -..+|.+.. .+|+..|.|+.||||
T Consensus       331 s~E~~r~~~~~q~-~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~cv~~  391 (391)
T KOG2427|consen  331 SQEDRRASGNTQE-QEEAKAGFHSESVTQLTWAGLKKDKSGRKSGELERKAREKHKSTCVVT  391 (391)
T ss_pred             chhhhccCcccch-hhhhhccchhhhhhhccccccCcccccccccchhhhhcCccccccccC
Confidence            9999998533221 1222222222222222   112 222344443 667777889999998



>PF04424 DUF544: Protein of unknown function (DUF544) ; InterPro: IPR007518 This is a eukaryotic protein of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query697
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-11
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 1e-05
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 4e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 64.5 bits (156), Expect = 8e-11
 Identities = 96/690 (13%), Positives = 203/690 (29%), Gaps = 213/690 (30%)

Query: 64  DTGEI--SQEKLLSLVAERLIDSNSNVNNKDAGYVENQQQNI--ADAIDLLPRLATGIDV 119
           +TGE     + +LS+  +  +D      N D   V++  ++I   + ID +  + +   V
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVD------NFDCKDVQDMPKSILSKEEIDHI--IMSKDAV 61

Query: 120 NIKFRRIDDFEFTPECAIFDLLDIPL---YHGWIVDP-QDYDTANAIGSKSYNAIMGELV 175
           +   R         E  +   ++  L   Y  +++ P +      ++ ++ Y        
Sbjct: 62  SGTLRLFWTLLSKQEEMVQKFVEEVLRINY-KFLMSPIKTEQRQPSMMTRMYI------- 113

Query: 176 ALETMGGDCKSNSEEDCVDFAAATTATLGVPSPCLSKARSFDDSPRSVSDQQTLRKGDLE 235
                  + +     D   F                       +  +VS     R     
Sbjct: 114 -------EQRDRLYNDNQVF-----------------------AKYNVS-----RLQPYL 138

Query: 236 EEEELLRALKLSESDV-----PSSPGNSVLANVNGATMPVSSDESTCSNMDVPADSVHTL 290
           +  + L  L+    +V       S G + +A        V         MD     +  L
Sbjct: 139 KLRQALLELR-PAKNVLIDGVLGS-GKTWVALD------VCLSYKVQCKMD---FKIFWL 187

Query: 291 ERRTVVESESFHQPESSIS---DKNGSFWEYCWGRSKFTLKADGSMKLDQPSKMESVAHN 347
             +     E+  +    +    D N            +T ++D S  +    ++ S+   
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPN------------WTSRSDHSSNI--KLRIHSIQAE 233

Query: 348 ISKDLVEKKSVQKL-----VQIEETI-LFSPG-KDTATVVETQ------VEISQGGKEVE 394
           + + L  K     L     VQ  +    F+   K    ++ T+         +     + 
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK---ILLTTRFKQVTDFLSAATTTHIS 290

Query: 395 NEPTSTNVHEP--VDNLSRCSTTEVSCL-----------------SVHNGDS--DSSSGR 433
            +  S  +        L +        L                 S+ +G +  D+    
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-H 349

Query: 434 VQLSDVPENFTSSVDGSEPIYEGEECILDSGTAMYEDREPVYEGEVILAEQAD--KSTLD 491
           V    +     SS++  EP                E R+ +++   +    A      L 
Sbjct: 350 VNCDKLTTIIESSLNVLEP---------------AEYRK-MFDRLSVFPPSAHIPTILL- 392

Query: 492 ACNVWSKDEITQQQGELI------KSFLKNNANQLTFYGLFCLQDGLK-----EREL--- 537
              +W   ++ +    ++       S ++    + T   +  +   LK     E  L   
Sbjct: 393 -SLIWF--DVIKSDVMVVVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLENEYALHRS 448

Query: 538 CVFFRNNHFSTMFKYDGELYLLATDQGYI--------NQPDLVWEKLNEVNGDTLFMTSN 589
            V    +H++    +D +  +      Y            +   E++       +F+   
Sbjct: 449 IV----DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP-ERMTLFR--MVFLDFR 501

Query: 590 FNEFKVESHANDSWDEHGAMAST-AD---YLAH-------YD------------TATHGG 626
           F E K+  H + +W+  G++ +T      Y  +       Y+               +  
Sbjct: 502 FLEQKIR-HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560

Query: 627 SDMNSDLQLAIALQQQ------EFEQQPQR 650
               +DL L IAL  +      E  +Q QR
Sbjct: 561 CSKYTDL-LRIALMAEDEAIFEEAHKQVQR 589


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00