Citrus Sinensis ID: 036505

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MPSTSVIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEccccccEEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccEEEcccccccccEEccccccccHHHHHHHHHHHHHHcccccccccccccEcccEEEEEEEccEEEEEEEEEEcccccEEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
MPSTSVIFCLLALATIHLssahnkpedYLKAHNEARasvgvgpmswVYKLADYSHKHAQklkgncnlkkpqvskySETIAWSNQGEITATEFVKMcmdgkplydynsntcalngtkcaIYTQVVWRNSVRLgcakercnnngtlnfvicnydprgnvfgqhpy
Flexible Loop (DISEMBL)
MPSTSVIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLkgncnlkkpqVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY
Low Complexity Region (SEG)
MPSTSVIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY
Disordered region (IsUnstruct)
*****VIFCLLALATIHLSSAHN***DYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVF*****
Disordered Region (DISOPRED)
*PSTSVIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY
Disordered Region (DISEMBL)
MPSTSVIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY
Disordered Region (DISPRO)
MPSTSVIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQH**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPSTSVIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
P33154	161	Pathogenesis-related prot	yes	no	0.926	0.937	0.474	3e-35
P07053	168	Pathogenesis-related prot	N/A	no	0.975	0.946	0.481	5e-35
P04284	159	Pathogenesis-related leaf	N/A	no	0.926	0.949	0.474	5e-34
P11670	177	Basic form of pathogenesi	N/A	no	0.944	0.870	0.472	9e-34
P09042	168	Pathogenesis-related prot	N/A	no	0.920	0.892	0.480	1e-33
Q04108	159	Pathogenesis-related leaf	N/A	no	0.926	0.949	0.462	6e-33
P08299	168	Pathogenesis-related prot	N/A	no	0.877	0.851	0.482	1e-31
Q00008	167	Pathogenesis-related prot	N/A	no	0.950	0.928	0.418	2e-30
Q41359	167	Pathogenesis-related prot	N/A	no	0.889	0.868	0.445	2e-30
Q05968	164	Pathogenesis-related prot	N/A	no	0.889	0.884	0.449	1e-29

>sp|P33154|PR1_ARATH Pathogenesis-related protein 1 OS=Arabidopsis thaliana GN=At2g14610 PE=1 SV=1

 Score =  147 bits (371), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 75/158 (47%), Positives = 101/158 (63%), Gaps = 7/158 (4%)

Query: 6   VIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNC 65
           ++F  L  A +  S A + P+DYL+ HN+AR +VGVGPM W  ++A Y+  +A++L+GNC
Sbjct: 11  IVFVALVGALVLPSKAQDSPQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQLRGNC 70

Query: 66  NLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
            L       Y E +AW + G+++    V M +  K  Y+Y +NTC  NG  C  YTQVVW
Sbjct: 71  RLIHSG-GPYGENLAWGS-GDLSGVSAVNMWVSEKANYNYAANTC--NGV-CGHYTQVVW 125

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           R SVRLGCAK RCNN GT+  + CNYDPRGN   + PY
Sbjct: 126 RKSVRLGCAKVRCNNGGTI--ISCNYDPRGNYVNEKPY 161

Partially responsible for acquired pathogen resistance.
Arabidopsis thaliana (taxid: 3702)

>sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B OS=Nicotiana tabacum PE=2 SV=1

 Score =  146 bits (369), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 79/164 (48%), Positives = 102/164 (62%), Gaps = 5/164 (3%)

Query: 1   MPSTSVIFCLLALATI-HLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQ 59
           MPS  ++  LL    I H S A N  +DYL AHN ARA VGV P++W   +A Y+  +  
Sbjct: 9   MPSFFLVSTLLLFLIISHSSHAQNSQQDYLDAHNTARADVGVEPLTWDNGVAAYAQNYVS 68

Query: 60  KLKGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAI 119
           +L  +CNL      +Y E +A  +   +TA + V+M +D K  YD++SNTCA  G  C  
Sbjct: 69  QLAADCNLVHSH-GQYGENLAQGSGDFMTAAKAVEMWVDEKQYYDHDSNTCA-QGQVCGH 126

Query: 120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           YTQVVWRNSVR+GCA+ +CNN G +  V CNYDP GNV GQ PY
Sbjct: 127 YTQVVWRNSVRVGCARVKCNNGGYV--VSCNYDPPGNVIGQSPY 168

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|P04284|PR06_SOLLC Pathogenesis-related leaf protein 6 OS=Solanum lycopersicum GN=PR1B1 PE=1 SV=2

 Score =  143 bits (360), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 75/158 (47%), Positives = 94/158 (59%), Gaps = 7/158 (4%)

Query: 6   VIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNC 65
           ++ CL+ LA  H   A N P+DYL  HN+ARA VGVGPMSW   LA  +  +A    G+C
Sbjct: 9   LLTCLMVLAIFHSCEAQNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDC 68

Query: 66  NLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
           NL     S   E +A    G+ T    V++ +  +P Y+Y +N C + G KC  YTQVVW
Sbjct: 69  NLIH---SGAGENLA-KGGGDFTGRAAVQLWVSERPSYNYATNQC-VGGKKCRHYTQVVW 123

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           RNSVRLGC + RCNN     F+ CNYDP GN  GQ PY
Sbjct: 124 RNSVRLGCGRARCNNGWW--FISCNYDPVGNWIGQRPY 159

Probably involved in the defense reaction of plants against pathogens. Has antifungal activity.

Solanum lycopersicum (taxid: 4081)

>sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related protein 1 OS=Nicotiana tabacum PE=3 SV=1

 Score =  142 bits (358), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 97/161 (60%), Gaps = 7/161 (4%)

Query: 4   TSVIFCLLALAT-IHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLK 62
           T+++ C +  A  IH S A N P+DYL  HN AR  VGVGPM+W  +LA Y+  +A +  
Sbjct: 5   TTIVACFITFAILIHSSKAQNSPQDYLNPHNAARRQVGVGPMTWDNRLAAYAQNYANQRI 64

Query: 63  GNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQ 122
           G+C +       Y E +A +   ++ A   VKM +D K  YDYNSN+C   G  C  YTQ
Sbjct: 65  GDCGMIHSH-GPYGENLA-AAFPQLNAAGAVKMWVDEKRFYDYNSNSCV--GGVCGHYTQ 120

Query: 123 VVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           VVWRNSVRLGCA+ R NN     F+ CNYDP GN  GQ P+
Sbjct: 121 VVWRNSVRLGCARVRSNNG--WFFITCNYDPPGNFIGQRPF 159

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C OS=Nicotiana tabacum PE=2 SV=3

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/154 (48%), Positives = 98/154 (63%), Gaps = 4/154 (2%)

Query: 10  LLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKK 69
           LL L   H   A N  +DYL AHN ARA VGV P++W  ++A Y+  +A +L  +CNL  
Sbjct: 19  LLFLIISHSCHAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVH 78

Query: 70  PQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSV 129
               +Y E +AW +   +TA + V+M ++ K  Y ++SNTCA  G  C  YTQVVWRNSV
Sbjct: 79  SH-GQYGENLAWGSGDFLTAAKAVEMWVNEKQYYAHDSNTCA-QGQVCGHYTQVVWRNSV 136

Query: 130 RLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           R+GCA+ +CNN G +  V CNYDP GNV G+ PY
Sbjct: 137 RVGCARVQCNNGGYI--VSCNYDPPGNVIGKSPY 168

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|Q04108|PR04_SOLLC Pathogenesis-related leaf protein 4 OS=Solanum lycopersicum PE=2 SV=1

 Score =  139 bits (351), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 73/158 (46%), Positives = 93/158 (58%), Gaps = 7/158 (4%)

Query: 6   VIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNC 65
           ++ CL+ LA  H   A N P+DYL  HN+ARA VGVGPMSW   LA  +  +A    G+C
Sbjct: 9   LLTCLMVLAIFHSCEAQNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDC 68

Query: 66  NLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
           NL     S   E +A    G+ T    V++ +  +P Y+Y +N C + G  C  YTQVVW
Sbjct: 69  NLIH---SGAGENLA-KGGGDFTGRAAVQLWVSERPDYNYATNQC-VGGKMCGHYTQVVW 123

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           RNSVRLGC + RCNN     F+ CNYDP GN  G+ PY
Sbjct: 124 RNSVRLGCGRARCNNG--WWFISCNYDPVGNWVGERPY 159

Probably involved in the defense reaction of plants against pathogens.

Solanum lycopersicum (taxid: 4081)

>sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A OS=Nicotiana tabacum PE=1 SV=1

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 71/147 (48%), Positives = 94/147 (63%), Gaps = 4/147 (2%)

Query: 17  HLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYS 76
           H   A N  +DYL AHN ARA VGV P++W  ++A Y+  +A +L  +CNL      +Y 
Sbjct: 26  HSCRAQNSQQDYLDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHSH-GQYG 84

Query: 77  ETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKE 136
           E +A  +   +TA + V+M +D K  YD++SNTCA  G  C  YTQVVWRNSVR+GCA+ 
Sbjct: 85  ENLAEGSGDFMTAAKAVEMWVDEKQYYDHDSNTCA-QGQVCGHYTQVVWRNSVRVGCARV 143

Query: 137 RCNNNGTLNFVICNYDPRGNVFGQHPY 163
           +CNN G +  V CNYDP GN  G+ PY
Sbjct: 144 QCNNGGYV--VSCNYDPPGNYRGESPY 168

Probably involved in the defense reaction of plants against pathogens.

Nicotiana tabacum (taxid: 4097)

>sp|Q00008|PRMS_MAIZE Pathogenesis-related protein PRMS OS=Zea mays GN=PRMS PE=2 SV=1

 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 100/160 (62%), Gaps = 5/160 (3%)

Query: 6   VIFCLLALAT-IHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGN 64
           +++ ++A AT +H S + N P+DYL   N ARA+VGVGP++W  KL  ++ K+A +  G+
Sbjct: 11  LLWLVMAAATAVHPSYSENSPQDYLTPQNSARAAVGVGPVTWSTKLQQFAEKYAAQRAGD 70

Query: 65  CNLKKPQVSKYSETIAWSNQG-EITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQV 123
           C L+      Y E I W + G +  A + V+  +D K  Y+Y +N+CA  G  C  YTQV
Sbjct: 71  CRLQHSG-GPYGENIFWGSAGFDWKAVDAVRSWVDEKQWYNYATNSCAA-GKVCGHYTQV 128

Query: 124 VWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           VWR +  +GCA+  C +N  + F+ICNY+PRGN+ G  PY
Sbjct: 129 VWRATTSIGCARVVCRDNRGV-FIICNYEPRGNIAGMKPY 167

Probably involved in the defense reaction of plants against pathogens.

Zea mays (taxid: 4577)

>sp|Q41359|PR1_SAMNI Pathogenesis-related protein PR-1 type OS=Sambucus nigra PE=2 SV=1

 Score =  131 bits (329), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/148 (44%), Positives = 91/148 (61%), Gaps = 3/148 (2%)

Query: 16  IHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKY 75
           +  S A N P+DY+ AHN AR++V VGP++W   +A ++ ++AQ   G+C L      +Y
Sbjct: 23  VQYSVAQNSPQDYVDAHNAARSAVNVGPVTWDESVAAFARQYAQSRAGDCRLVHSGDPRY 82

Query: 76  SETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAK 135
            E +A+ +  E+T    V M +  +  Y+ N+NTCA  G  C  YTQVVWRNSVR+GCA+
Sbjct: 83  GENLAFGSGFELTGRNAVDMWVAERNDYNPNTNTCAP-GKVCGHYTQVVWRNSVRIGCAR 141

Query: 136 ERCNNNGTLNFVICNYDPRGNVFGQHPY 163
            RCNN     F+ CNY P GN  GQ PY
Sbjct: 142 VRCNNGAW--FITCNYSPPGNYAGQRPY 167

Probably involved in the defense reaction of plants against pathogens.

Sambucus nigra (taxid: 4202)

>sp|Q05968|PR1_HORVU Pathogenesis-related protein 1 OS=Hordeum vulgare PE=2 SV=1

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/149 (44%), Positives = 91/149 (61%), Gaps = 4/149 (2%)

Query: 16  IHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKY 75
           ++LS A N P+DY+  HN AR++VGVG +SW  KL  ++  +A +   +C L+      Y
Sbjct: 19  VNLSQAQNSPQDYVSPHNAARSAVGVGAVSWSTKLQAFAQNYANQRINDCKLQHSG-GPY 77

Query: 76  SETIAWSNQG-EITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCA 134
            E I W + G +  A++ V   +  K  YDY SNTCA  G  C  YTQVVWR S  +GCA
Sbjct: 78  GENIFWGSAGADWKASDAVNSWVSEKKDYDYGSNTCAA-GKVCGHYTQVVWRASTSIGCA 136

Query: 135 KERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           +  CNNN  + F+ CNY+PRGN+ GQ PY
Sbjct: 137 RVVCNNNRGV-FITCNYEPRGNIIGQKPY 164

Probably involved in the defense reaction of plants against pathogens.

Hordeum vulgare (taxid: 4513)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
255562124	162	STS14 protein precursor, putative [Ricin	0.957	0.962	0.512	2e-38
307340531	159	pathogenesis-related protein 1 [Vitis vi	0.932	0.955	0.531	8e-38
307340515	160	pathogenesis-related protein 1 [Vitis hy	0.932	0.95	0.531	8e-38
225429115	160	PREDICTED: basic form of pathogenesis-re	0.932	0.95	0.531	8e-38
307340507	160	pathogenesis-related protein 1 [Vitis hy	0.932	0.95	0.531	9e-38
307340513	160	pathogenesis-related protein 1 [Vitis hy	0.932	0.95	0.525	1e-37
307340509	160	pathogenesis-related protein 1 [Vitis hy	0.932	0.95	0.525	1e-37
359744024	161	pathogensis-related protein 1a, partial	0.938	0.950	0.518	1e-37
307340533	160	pathogenesis-related protein 1 [Vitis sh	0.932	0.95	0.525	2e-37
224105801	161	predicted protein [Populus trichocarpa]	0.938	0.950	0.512	4e-37

>gi|255562124|ref|XP_002522070.1| STS14 protein precursor, putative [Ricinus communis] gi|223538669|gb|EEF40270.1| STS14 protein precursor, putative [Ricinus communis]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/162 (51%), Positives = 112/162 (69%), Gaps = 6/162 (3%)

Query: 2   PSTSVIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKL 61
           PS +++ C++++A I  S A +  +DYL AHN AR  VG+GP++W  K+A Y+  HA + 
Sbjct: 6   PSLALV-CIISIALIFSSHAQDTQQDYLNAHNSARGDVGLGPLTWDDKVASYAQHHANQH 64

Query: 62  KGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYT 121
           K +C+L   +   Y E +AWS+ G+++ T+ VKM +D KP YDYNSN+CA +G  C  YT
Sbjct: 65  KSDCSLVHSE-GPYGENLAWSS-GDLSGTDAVKMWIDEKPYYDYNSNSCA-SGQICGHYT 121

Query: 122 QVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           QVVWR+SVRLGCAK  CNN GT  F+ CNYDP GN  GQ PY
Sbjct: 122 QVVWRSSVRLGCAKVSCNNGGT--FIGCNYDPPGNYIGQRPY 161

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307340531|gb|ADN43427.1| pathogenesis-related protein 1 [Vitis vinifera]

 Score =  161 bits (408), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 100/158 (63%), Gaps = 6/158 (3%)

Query: 6   VIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNC 65
           V  CL+ LA +H S A N  +DYL AHN ARA VGVG M+W   +A Y+  +A +  G+C
Sbjct: 8   VFICLVGLALVHTSCAQNSQQDYLNAHNTARAQVGVGSMTWNNTVASYAQNYANQRIGDC 67

Query: 66  NLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
           NL       Y E IAW   G +T T+ V + +  KP YDYNSN+C   G KC  YTQVVW
Sbjct: 68  NLVHSN-GPYGENIAWG-SGSLTGTDAVNLWVGEKPNYDYNSNSCV--GGKCGHYTQVVW 123

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           RNSVRLGCA+ +CNN G   FV CNYDP GN  GQ PY
Sbjct: 124 RNSVRLGCARVQCNNGGW--FVTCNYDPPGNYVGQRPY 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307340515|gb|ADN43419.1| pathogenesis-related protein 1 [Vitis hybrid cultivar]

 Score =  161 bits (408), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 100/158 (63%), Gaps = 6/158 (3%)

Query: 6   VIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNC 65
           V  C+L LA +H S A N  +DYL AHN ARA VGVG M+W   +A Y+  +A +  G+C
Sbjct: 9   VFICVLGLALVHTSCAQNSQQDYLNAHNTARAQVGVGSMTWNNTVASYAQNYANQRIGDC 68

Query: 66  NLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
           NL       Y E IAW   G +T T+ V + +  KP YDYNSN+C   G KC  YTQVVW
Sbjct: 69  NLVHSN-GPYGENIAWG-SGSLTGTDAVNLWVGEKPNYDYNSNSCV--GGKCGHYTQVVW 124

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           RNSVRLGCA+ +CNN G   FV CNYDP GN  GQ PY
Sbjct: 125 RNSVRLGCARVQCNNGGW--FVTCNYDPPGNYVGQRPY 160

Source: Vitis hybrid cultivar

Species: Vitis hybrid cultivar

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429115|ref|XP_002273416.1| PREDICTED: basic form of pathogenesis-related protein 1 [Vitis vinifera] gi|307340517|gb|ADN43420.1| pathogenesis-related protein 1 [Vitis hybrid cultivar] gi|307340519|gb|ADN43421.1| pathogenesis-related protein 1 [Vitis hybrid cultivar] gi|307340521|gb|ADN43422.1| pathogenesis-related protein 1 [Vitis vinifera] gi|307340523|gb|ADN43423.1| pathogenesis-related protein 1 [Vitis vinifera] gi|307340525|gb|ADN43424.1| pathogenesis-related protein 1 [Vitis vinifera] gi|307340527|gb|ADN43425.1| pathogenesis-related protein 1 [Vitis vinifera]

 Score =  161 bits (408), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 100/158 (63%), Gaps = 6/158 (3%)

Query: 6   VIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNC 65
           V  CL+ LA +H S A N  +DYL AHN ARA VGVG M+W   +A Y+  +A +  G+C
Sbjct: 9   VFICLVGLALVHTSCAQNSQQDYLNAHNTARAQVGVGSMTWNNTVASYAQNYANQRIGDC 68

Query: 66  NLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
           NL       Y E IAW   G +T T+ V + +  KP YDYNSN+C   G KC  YTQVVW
Sbjct: 69  NLVHSN-GPYGENIAWG-SGSLTGTDAVNLWVGEKPNYDYNSNSCV--GGKCGHYTQVVW 124

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           RNSVRLGCA+ +CNN G   FV CNYDP GN  GQ PY
Sbjct: 125 RNSVRLGCARVQCNNGGW--FVTCNYDPPGNYVGQRPY 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307340507|gb|ADN43415.1| pathogenesis-related protein 1 [Vitis hybrid cultivar]

 Score =  161 bits (407), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 101/158 (63%), Gaps = 6/158 (3%)

Query: 6   VIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNC 65
           V  C+L LA +H S A N  +DYL AHN ARA VGVG M+W   +A Y+  +A +  G+C
Sbjct: 9   VFICVLGLALVHTSCAQNSQQDYLNAHNTARAQVGVGSMTWNNTVASYAQNYANQRIGDC 68

Query: 66  NLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
           NL       Y E IAW + G +T T+ V + +  KP YDYNSN+C   G KC  YTQVVW
Sbjct: 69  NLVHSN-GPYGENIAWGS-GSLTGTDAVDLWVGEKPNYDYNSNSCV--GGKCGHYTQVVW 124

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           RNSVRLGCA+ +CNN G   FV CNYDP GN  GQ PY
Sbjct: 125 RNSVRLGCARVQCNNGGW--FVTCNYDPPGNYVGQRPY 160

Source: Vitis hybrid cultivar

Species: Vitis hybrid cultivar

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307340513|gb|ADN43418.1| pathogenesis-related protein 1 [Vitis hybrid cultivar] gi|307340529|gb|ADN43426.1| pathogenesis-related protein 1 [Vitis hybrid cultivar]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 100/158 (63%), Gaps = 6/158 (3%)

Query: 6   VIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNC 65
           V  CL+ LA +H S A N  +DYL AHN ARA VGVG M+W   +A Y+  +A +  G+C
Sbjct: 9   VFICLVGLALVHTSCAQNSQQDYLNAHNTARAQVGVGSMTWNNTVASYAQNYANQRIGDC 68

Query: 66  NLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
           NL       Y E IAW   G +T T+ V + +  KP YDYNSN+C   G KC  YTQVVW
Sbjct: 69  NLVHSN-GPYGENIAWG-SGSLTGTDAVNLWVGEKPNYDYNSNSCV--GGKCGHYTQVVW 124

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           RNSVRLGCA+ +CNN G   F+ CNYDP GN  GQ PY
Sbjct: 125 RNSVRLGCARVQCNNGGW--FITCNYDPPGNYVGQRPY 160

Source: Vitis hybrid cultivar

Species: Vitis hybrid cultivar

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307340509|gb|ADN43416.1| pathogenesis-related protein 1 [Vitis hybrid cultivar]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 100/158 (63%), Gaps = 6/158 (3%)

Query: 6   VIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNC 65
           V  C+L LA +H S A N  +DYL AHN ARA VGVG M+W   +A Y+  +A +  G+C
Sbjct: 9   VFICVLGLALVHTSCAQNSQQDYLNAHNTARAQVGVGSMTWNNTVASYAQNYANQRIGDC 68

Query: 66  NLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
           NL       Y E IAW   G +T T+ V + +  KP YDYNSN+C   G KC  YTQVVW
Sbjct: 69  NLVHSN-GPYGENIAWG-SGSLTGTDAVNLWVGEKPNYDYNSNSCV--GGKCGHYTQVVW 124

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           RNSVRLGCA+ +CNN G   F+ CNYDP GN  GQ PY
Sbjct: 125 RNSVRLGCARVQCNNGGW--FITCNYDPPGNYVGQRPY 160

Source: Vitis hybrid cultivar

Species: Vitis hybrid cultivar

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359744024|gb|AEV57468.1| pathogensis-related protein 1a, partial [Prunus persica]

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/158 (51%), Positives = 100/158 (63%), Gaps = 5/158 (3%)

Query: 6   VIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNC 65
              CL+ LA +  + A + P+DYL AHN ARA VGV P++W   L  Y+ ++A    G+C
Sbjct: 9   AFVCLIGLALLQSTGAQDSPQDYLNAHNAARAQVGVAPLTWDPNLVAYAQRYANSRAGDC 68

Query: 66  NLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
           NL       Y E IA S  G+++ T  V + +  KP YDYNSNTCA  G  C  YTQVVW
Sbjct: 69  NLVHSN-GPYGENIAKST-GDLSGTAAVNLFVGEKPDYDYNSNTCAA-GKMCGHYTQVVW 125

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           RNSVRLGCAK RC N GT  F+ CNYDPRGN+ GQ PY
Sbjct: 126 RNSVRLGCAKARCTNGGT--FIGCNYDPRGNIRGQRPY 161

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307340533|gb|ADN43428.1| pathogenesis-related protein 1 [Vitis shuttleworthii]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 100/158 (63%), Gaps = 6/158 (3%)

Query: 6   VIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNC 65
           V  CL+ L+ +H S A N  +DYL AHN ARA VGVG M+W   +A Y+  +A +  G+C
Sbjct: 9   VFICLVGLSLVHTSCAQNSQQDYLNAHNTARAQVGVGSMTWNNTVASYAQNYANQRIGDC 68

Query: 66  NLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
           NL       Y E IAW   G +T T+ V + +  KP YDYNSN+C   G KC  YTQVVW
Sbjct: 69  NLVHSN-GPYGENIAWG-SGSLTGTDAVNLWVGEKPNYDYNSNSCV--GGKCGHYTQVVW 124

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           RNSVRLGCA+ +CNN G   FV CNYDP GN  GQ PY
Sbjct: 125 RNSVRLGCARVQCNNGGW--FVTCNYDPPGNYVGQRPY 160

Source: Vitis shuttleworthii

Species: Vitis shuttleworthii

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105801|ref|XP_002313935.1| predicted protein [Populus trichocarpa] gi|222850343|gb|EEE87890.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 81/158 (51%), Positives = 104/158 (65%), Gaps = 5/158 (3%)

Query: 6   VIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNC 65
             F L+ L+ I  S A + P+DYL AHN ARA+VGVGP++W   +  Y+  +A +  G+C
Sbjct: 9   AFFTLITLSLILPSRAQDNPQDYLDAHNTARAAVGVGPLTWDTTVQAYAQNYANQRAGDC 68

Query: 66  NLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
           NL       Y E IAWS+  +++ T+ VKM +D K  YDYNSN+CA  G +C  YTQVVW
Sbjct: 69  NLIHSG-GPYGENIAWSS-ADLSGTDAVKMWVDEKAYYDYNSNSCAA-GQQCGHYTQVVW 125

Query: 126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           RNS RLGCAK +C+  GT  F+ CNYDP GNV GQ PY
Sbjct: 126 RNSARLGCAKVKCSTGGT--FIGCNYDPPGNVVGQKPY 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:2064294	161	PR1 "AT2G14610" [Arabidopsis t	0.926	0.937	0.474	3.5e-36
TAIR|locus:2134178	163	AT4G33720 "AT4G33720" [Arabido	0.926	0.926	0.496	1.5e-35
TAIR|locus:2055240	161	PRB1 "AT2G14580" [Arabidopsis	0.926	0.937	0.462	6.7e-33
TAIR|locus:2091196	161	AT3G19690 "AT3G19690" [Arabido	0.950	0.962	0.440	6.9e-31
TAIR|locus:2180662	166	AT5G26130 "AT5G26130" [Arabido	0.938	0.921	0.462	1.1e-30
TAIR|locus:2005537	176	PR-1-LIKE "AT2G19990" [Arabido	0.822	0.761	0.464	1.9e-28
TAIR|locus:2134193	172	AT4G33730 "AT4G33730" [Arabido	0.840	0.796	0.423	6.4e-28
TAIR|locus:2031055	161	AT1G50060 "AT1G50060" [Arabido	0.865	0.875	0.427	3.5e-27
TAIR|locus:2134283	166	AT4G33710 "AT4G33710" [Arabido	0.969	0.951	0.408	1.9e-26
TAIR|locus:2126169	160	AT4G07820 "AT4G07820" [Arabido	0.950	0.968	0.401	2.6e-24

TAIR|locus:2064294 PR1 "AT2G14610" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 75/158 (47%), Positives = 101/158 (63%)

Query:     6 VIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNC 65
             ++F  L  A +  S A + P+DYL+ HN+AR +VGVGPM W  ++A Y+  +A++L+GNC
Sbjct:    11 IVFVALVGALVLPSKAQDSPQDYLRVHNQARGAVGVGPMQWDERVAAYARSYAEQLRGNC 70

Query:    66 NLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
              L       Y E +AW + G+++    V M +  K  Y+Y +NTC  NG  C  YTQVVW
Sbjct:    71 RLIHSG-GPYGENLAWGS-GDLSGVSAVNMWVSEKANYNYAANTC--NGV-CGHYTQVVW 125

Query:   126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
             R SVRLGCAK RCNN GT+  + CNYDPRGN   + PY
Sbjct:   126 RKSVRLGCAKVRCNNGGTI--ISCNYDPRGNYVNEKPY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;ISS

GO:0009627 "systemic acquired resistance" evidence=IEP;RCA

GO:0005618 "cell wall" evidence=IDA

GO:0010266 "response to vitamin B1" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0006952 "defense response" evidence=TAS

TAIR|locus:2134178 AT4G33720 "AT4G33720" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 79/159 (49%), Positives = 103/159 (64%)

Query:     5 SVIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGN 64
             ++ F L+ +  +HL  A + P+D+L  HN ARA VGVGP+ W  K+A Y+  +A + KG+
Sbjct:    13 AITFFLVLI--VHLK-AQDSPQDFLAVHNRARAEVGVGPLRWDEKVAAYARNYANQRKGD 69

Query:    65 CNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVV 124
             C +K    S Y E IAWS+ G +T    V M +D +  YDY+SNTCA +  +C  YTQVV
Sbjct:    70 CAMKHSSGS-YGENIAWSS-GSMTGVAAVDMWVDEQFDYDYDSNTCAWD-KQCGHYTQVV 126

Query:   125 WRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
             WRNS RLGCAK RCNN  T  F+ CNYDP GN  G+ PY
Sbjct:   127 WRNSERLGCAKVRCNNGQT--FITCNYDPPGNWVGEWPY 163

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2055240 PRB1 "AT2G14580" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 73/158 (46%), Positives = 98/158 (62%)

Query:     6 VIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNC 65
             +I   L  A +    A +  +DY+ AHN+AR+ +GVGPM W   LA Y+  +A +LKG+C
Sbjct:    11 IILAALVGALVVPLKAQDSQQDYVNAHNQARSQIGVGPMQWDEGLAAYARNYANQLKGDC 70

Query:    66 NLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVW 125
              L   +   Y E +A S  G+++    V + ++ K  Y+Y++NTC  NG  C  YTQVVW
Sbjct:    71 RLVHSR-GPYGENLAKSG-GDLSGVAAVNLWVNEKANYNYDTNTC--NGV-CGHYTQVVW 125

Query:   126 RNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
             RNSVRLGCAK RCNN GT+  + CNYDP GN   Q PY
Sbjct:   126 RNSVRLGCAKVRCNNGGTI--ISCNYDPPGNYANQKPY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

TAIR|locus:2091196 AT3G19690 "AT3G19690" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 71/161 (44%), Positives = 103/161 (63%)

Query:     4 TSVIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKG 63
             T+++F LLA+A  + S A +  + +L+AHNEAR  VG+ P+ W  ++A Y+  +A +   
Sbjct:     6 TNILF-LLAIALFYGSLAEDLQQQFLEAHNEARNEVGLDPLVWDDEVAAYAASYANQRIN 64

Query:    64 NCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCA-LNGTKCAIYTQ 122
             +C L       + E IA S+ GE++A +  +M ++ K  YDY+SNTC   NG  C  YTQ
Sbjct:    65 DCALVHSN-GPFGENIAMSS-GEMSAEDAAEMWINEKQYYDYDSNTCNDPNGGTCLHYTQ 122

Query:   123 VVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
             VVW+N+VRLGCAK  CN+ GT  F+ CNYDP GN  G+ P+
Sbjct:   123 VVWKNTVRLGCAKVVCNSGGT--FITCNYDPPGNYIGEKPF 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180662 AT5G26130 "AT5G26130" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 74/160 (46%), Positives = 97/160 (60%)

Query:     5 SVIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGN 64
             SVI   LA A + L  A ++P+DYL  HN AR  VGV PM W      Y+  +AQ+ KG+
Sbjct:    13 SVIVLFLAFA-VPLK-AQDQPQDYLDEHNRARTQVGVPPMKWHAGAEQYAWNYAQQRKGD 70

Query:    65 CNLKKPQVSK-YSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQV 123
             C+L     +  Y E +AWS  G ++  E VK+ ++ K  Y Y SNTC+ +G +C  YTQV
Sbjct:    71 CSLTHSNSNGLYGENLAWSG-GALSGAEAVKLWVNEKSDYIYASNTCS-DGKQCGHYTQV 128

Query:   124 VWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
             VWR S  +GCAK +C+N GT  FV CNY P GN  G+ PY
Sbjct:   129 VWRTSEWVGCAKVKCDNGGT--FVTCNYYPPGNYRGRWPY 166

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2005537 PR-1-LIKE "AT2G19990" [Arabidopsis thaliana (taxid:3702)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 66/142 (46%), Positives = 86/142 (60%)

Query:    24 KPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIA--W 81
             KP++ L  HN+ARA VGVGPM W   LA Y+  +A +   +C +K   +  + E +A  W
Sbjct:    41 KPQETLVVHNKARAMVGVGPMVWNETLATYAQSYAHERARDCAMKH-SLGPFGENLAAGW 99

Query:    82 SNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNN 141
                    ATE+    M  K  YDY+SNTC  +G  C  YTQ+VWR+SVRLGCA  RC N+
Sbjct:   100 GTMSGPVATEY---WMTEKENYDYDSNTCGGDGV-CGHYTQIVWRDSVRLGCASVRCKND 155

Query:   142 GTLNFVICNYDPRGNVFGQHPY 163
               + +VIC+YDP GN  GQ PY
Sbjct:   156 EYI-WVICSYDPPGNYIGQRPY 176

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0042742 "defense response to bacterium" evidence=IEP

TAIR|locus:2134193 AT4G33730 "AT4G33730" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 61/144 (42%), Positives = 87/144 (60%)

Query:    21 AHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKL-KGNCNLKKPQVSKYSETI 79
             +H  P+ YL+ HN ARA+V V P+ W + +A  +  +A  L  G C+L+      Y E +
Sbjct:    35 SHEYPDSYLRPHNAARAAVKVKPLRWDFGIATVAQDYANHLASGPCSLEHSS-GPYGENL 93

Query:    80 AWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCN 139
             A+ + G+++A + V M +  K  YD+ SN+C  +G  C  YTQVVWR S RLGC K +CN
Sbjct:    94 AFGS-GDMSAAQAVAMWVHEKSYYDFYSNSC--HGPACGHYTQVVWRGSARLGCGKAKCN 150

Query:   140 NNGTLNFVICNYDPRGNVFGQHPY 163
             N  ++  V+CNYDP GN  G  PY
Sbjct:   151 NGASI--VVCNYDPAGNYIGARPY 172

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0010054 "trichoblast differentiation" evidence=RCA

TAIR|locus:2031055 AT1G50060 "AT1G50060" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 62/145 (42%), Positives = 85/145 (58%)

Query:    19 SSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSET 78
             ++A N P+DYL +HN ARA VGV  + W   LA Y+  ++   K +CNL       Y E 
Sbjct:    21 TNAQNTPQDYLNSHNTARAQVGVPNVVWDTTLAAYALNYSNFRKADCNLVHSN-GPYGEN 79

Query:    79 IAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERC 138
             +A  +    +A   VK+ +D KP Y Y  N C   G +C  YTQVVWR+SV++GCA+ +C
Sbjct:    80 LAKGSSSSFSAISAVKLWVDEKPYYSYAYNNCT-GGKQCLHYTQVVWRDSVKIGCARVQC 138

Query:   139 NNNGTLNFVICNYDPRGNVFGQHPY 163
              N  T  FV CNY+  GN  G++PY
Sbjct:   139 TN--TWWFVSCNYNSPGNWVGEYPY 161

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134283 AT4G33710 "AT4G33710" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 67/164 (40%), Positives = 92/164 (56%)

Query:     2 PSTSVIFCL-LALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQK 60
             P T V+  L L LA      A ++ +DYL  HN AR  V V  + W    A Y+  +AQ+
Sbjct:     7 PQTLVLLALALVLAFAVPLKAQDRRQDYLDVHNHARDDVSVPHIKWHAGAARYAWNYAQR 66

Query:    61 LKGNCNL-KKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAI 119
              K +C L       +Y E +AWS+ G+++    V++ +  K  Y + SNTC   G +C  
Sbjct:    67 RKRDCRLIHSNSRGRYGENLAWSS-GDMSGAAAVRLWVREKSDYFHKSNTCRA-GKQCGH 124

Query:   120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
             YTQVVW+NS  +GCAK +C+N GT  FV CNY   GNV G+ PY
Sbjct:   125 YTQVVWKNSEWVGCAKVKCDNGGT--FVTCNYSHPGNVRGRRPY 166

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2126169 AT4G07820 "AT4G07820" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 65/162 (40%), Positives = 91/162 (56%)

Query:     2 PSTSVIFCLLALATIHLSSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKL 61
             P+  V+   LAL+      A ++P+DY  AHN AR SVGV P+ W   L  Y+  +A+K 
Sbjct:     6 PNLLVLAIALALSFSVPLKAQDQPQDYFNAHNRARVSVGVSPLMWSQTLTAYAQAYAEKR 65

Query:    62 KGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYT 121
             + +C L       Y ETI  ++  + +A EFV   ++ K  YDY +NTC   G  C  Y 
Sbjct:    66 R-DCGLFLSG-GPYGETIK-ADIIDFSAEEFVSTFLNQKSDYDYTTNTCRA-GKSCDGYK 121

Query:   122 QVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
             QV++R SV LGCAK +CNN G L   IC+YDP   +  + P+
Sbjct:   122 QVLFRKSVFLGCAKVKCNNGGFL--AICSYDP-SVILSERPF 160

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P33154	PR1_ARATH	No assigned EC number	0.4746	0.9263	0.9378	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00038567001 SubName- Full=Chromosome chr3 scaffold_95, whole genome shotgun sequence; (160 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
cd05381	136	cd05381, SCP_PR-1_like, SCP_PR-1_like: SCP-like ex	2e-51
cd05382	132	cd05382, SCP_GAPR-1_like, SCP_GAPR-1_like: SCP-lik	4e-25
cd00168	122	cd00168, SCP, SCP: SCP-like extracellular protein	6e-23
cd05384	129	cd05384, SCP_PRY1_like, SCP_PRY1_like: SCP-like ex	6e-23
smart00198	144	smart00198, SCP, SCP / Tpx-1 / Ag5 / PR-1 / Sc7 fa	4e-21
cd05380	144	cd05380, SCP_euk, SCP_euk: SCP-like extracellular	4e-16
pfam00188	121	pfam00188, CAP, Cysteine-rich secretory protein fa	1e-10
cd05385	144	cd05385, SCP_GLIPR-1_like, SCP_GLIPR-1_like: SCP-l	1e-10
cd05559	136	cd05559, SCP_HrTT-1, SCP_HrTT-1: SCP-like extracel	6e-09
cd05383	138	cd05383, SCP_CRISP, SCP_CRISP: SCP-like extracellu	7e-04

>gnl|CDD|240181 cd05381, SCP_PR-1_like, SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily

 Score =  160 bits (407), Expect = 2e-51
 Identities = 66/139 (47%), Positives = 88/139 (63%), Gaps = 3/139 (2%)

Query: 25  PEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQ 84
           P+D+L AHN ARA+VGV P+ W   LA Y+ ++A + +G+C L       Y E + W + 
Sbjct: 1   PQDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRGDCAL-VHSNGPYGENLFWGSG 59

Query: 85  GEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTL 144
           G  +A + V   +  K  YDY+SNTCA  G  C  YTQVVWRN+ R+GCA+  C+N G +
Sbjct: 60  GNWSAADAVASWVSEKKYYDYDSNTCA-AGKMCGHYTQVVWRNTTRVGCARVTCDNGGGV 118

Query: 145 NFVICNYDPRGNVFGQHPY 163
            F+ICNYDP GN  GQ PY
Sbjct: 119 -FIICNYDPPGNYIGQRPY 136

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 136

>gnl|CDD|240182 cd05382, SCP_GAPR-1_like, SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family

 Score = 93.0 bits (232), Expect = 4e-25
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 7/131 (5%)

Query: 29  LKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIA--WSNQGE 86
           L AHNE RA  G  P+    +LA  + K A+KL  +  L+    S Y E +A    +  +
Sbjct: 7   LDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGSGPD 66

Query: 87  ITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNF 146
           +T  E V    +    YD+N        +K   +TQVVW++S  LG    +        +
Sbjct: 67  LTGEEAVDSWYNEIKKYDFNKP---GFSSKTGHFTQVVWKSSTELGVGVAKSKKGCV--Y 121

Query: 147 VICNYDPRGNV 157
           V+  Y P GNV
Sbjct: 122 VVARYRPAGNV 132

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms. Length = 132

>gnl|CDD|238097 cd00168, SCP, SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes

 Score = 87.5 bits (217), Expect = 6e-23
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 14/132 (10%)

Query: 25  PEDYLKAHNEARASV-GVGPMSWVYKLADYSHKHAQKLKGNCNLK---KPQVSKYSETIA 80
            ++ ++ HN  RA V G+ PMSW  +LA  +  +A      C  K   +       E +A
Sbjct: 1   AQEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYAN----RCIFKHSGEDGRGFVGENLA 56

Query: 81  WSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNN 140
             +  ++T    V+   +    Y++         +    YTQVVW+N+ ++GC    C +
Sbjct: 57  AGS-YDMTGPAAVQAWYNEIKNYNFGQPGF---SSGTGHYTQVVWKNTTKIGCGVAFCGS 112

Query: 141 NGTLNFVICNYD 152
           N    +V+CNY 
Sbjct: 113 NSY--YVVCNYG 122

This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. Little is known about the biological roles of the bacterial and archaeal SCP domains. Length = 122

>gnl|CDD|240184 cd05384, SCP_PRY1_like, SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi

 Score = 87.4 bits (217), Expect = 6e-23
 Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 8/134 (5%)

Query: 26  EDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQG 85
              L AHN  RA  GV P++W   LA+Y+  +A     + NL       Y E +A    G
Sbjct: 4   SSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYDCSGNLAHSG-GPYGENLAA---G 59

Query: 86  EITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLN 145
             + T  V    D    YDY++            +TQ+VW+++ ++GCA + C       
Sbjct: 60  YPSGTSAVDAWYDEIEDYDYSNPG---FSEATGHFTQLVWKSTTQVGCAYKDCGGAWGW- 115

Query: 146 FVICNYDPRGNVFG 159
           +++C YDP GNV G
Sbjct: 116 YIVCEYDPAGNVIG 129

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune. Length = 129

>gnl|CDD|214553 smart00198, SCP, SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains

 Score = 83.2 bits (206), Expect = 4e-21
 Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 21/148 (14%)

Query: 23  NKPEDYLKAHNEARASVGVG-----------PMSWVYKLADYSHKHAQKLKGNCNLK-KP 70
            + ++ L AHN+ R+ V  G            ++W  +LA  +   A +    C      
Sbjct: 1   AQQQEILDAHNKLRSQVAGGFLAAPAASNMLKLTWDCELASSAQNWANQ----CPFGHST 56

Query: 71  QVSKYSETIAW--SNQG--EITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWR 126
               Y E +AW  S+    +  A+  V++  D    Y Y+SNTC     K   YTQVVW 
Sbjct: 57  PRPGYGENLAWWSSSTALPDTYASAAVQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWA 116

Query: 127 NSVRLGCAKERCNNNGTLN-FVICNYDP 153
            + ++GC    C +       V+CNYDP
Sbjct: 117 KTYKVGCGVANCPDGTKKKTVVVCNYDP 144

Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function. Length = 144

>gnl|CDD|240180 cd05380, SCP_euk, SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes

 Score = 70.2 bits (172), Expect = 4e-16
 Identities = 33/144 (22%), Positives = 54/144 (37%), Gaps = 18/144 (12%)

Query: 26  EDYLKAHNEARASVGVG------------PMSWVYKLADYSHKHAQKLKGNCNLKKPQVS 73
           +  L AHNE R+ V  G             + W  +LA  +   A+      +       
Sbjct: 2   QAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWAKTCVFE-HSPCRNTG 60

Query: 74  KYSETIAWS----NQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSV 129
              + +A      +  E  A + V    +    Y + SN      +    +TQ+VW  + 
Sbjct: 61  GVGQNLAAGSSTGSTVEELAEDAVNAWYNELKDYGFGSNPTNNFNSGIGHFTQMVWAKTT 120

Query: 130 RLGCAKERC-NNNGTLNFVICNYD 152
           ++GCA  RC  + G    V+CNY 
Sbjct: 121 KVGCAVARCGKDGGNKTVVVCNYS 144

This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 144

>gnl|CDD|215778 pfam00188, CAP, Cysteine-rich secretory protein family

 Score = 55.7 bits (134), Expect = 1e-10
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 10/127 (7%)

Query: 29  LKAHNEARASVGVGP-MSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAW---SNQ 84
           L  HNE R++ G  P +SW   LA  +  HA      C         Y E +A    + +
Sbjct: 1   LNLHNELRSAAGGAPPLSWDPTLAAAAQDHAAY----CADNGYFGHDYGENLALVSVAGK 56

Query: 85  GEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTL 144
            +      V+   D    YD      A   +     T ++W  S ++GCA  +C  +G+ 
Sbjct: 57  ADDPGVAAVENWYDEAKDYDAAVGINAWM-SSPGHRTNLLWPKSTKVGCAVAKC-GDGSS 114

Query: 145 NFVICNY 151
            +V+CNY
Sbjct: 115 YYVVCNY 121

This is a large family of cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) that are found in a wide range of organisms, including prokaryotes and non-vertebrate eukaryotes, The nine subfamilies of the mammalian CAP 'super'family include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins. Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP 'super'family results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences. The Ca++-chelating function would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine from Heloderma horridum horridum blocks the Ca++ transporting ryanodine receptors. Length = 121

>gnl|CDD|240185 cd05385, SCP_GLIPR-1_like, SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family

 Score = 55.8 bits (135), Expect = 1e-10
 Identities = 43/144 (29%), Positives = 65/144 (45%), Gaps = 20/144 (13%)

Query: 26  EDYLKAHNEARASV-----GVGPMSWVYKLADYSHKHAQKLKG--NCNLKKPQVS--KYS 76
           ++ ++ HNE R+ V      +  M+W   LA  +   A+K K   N  L K      K++
Sbjct: 4   DECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWAKKCKFKHNIYLGKRYKCHPKFT 63

Query: 77  ---ETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGC 133
              E I   +    +    V    +    YD+++N+C  +   C  YTQVVW  S ++GC
Sbjct: 64  SVGENIWLGSIYIFSPKNAVTSWYNEGKFYDFDTNSC--SRV-CGHYTQVVWATSYKVGC 120

Query: 134 AKERCNNNGTL----NFVICNYDP 153
           A   C N G +     FV CNY P
Sbjct: 121 AVAFCPNLGGIPNAAIFV-CNYAP 143

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 144

>gnl|CDD|240186 cd05559, SCP_HrTT-1, SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians

 Score = 51.4 bits (123), Expect = 6e-09
 Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 16/135 (11%)

Query: 29  LKAHNEARASVG-----VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSN 83
           +  HN+ R+ V      +  M+W  +LA  +  +A+K   + N       +  E +  S 
Sbjct: 5   VDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYARKCIWDHN-PDRGHLRVGENLFIST 63

Query: 84  QGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNN--- 140
                AT+ V+   + K  Y+YN+NTCA     C  YTQVVW N+ ++GC    C     
Sbjct: 64  GPPFDATKAVEDWNNEKLDYNYNTNTCA-PNKMCGHYTQVVWANTFKIGCGSYFCETLEV 122

Query: 141 ----NGTLNFVICNY 151
               N TL  ++CNY
Sbjct: 123 LRWENATL--LVCNY 135

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Length = 136

>gnl|CDD|240183 cd05383, SCP_CRISP, SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDP 153
           YTQ+VW  S  +GCA   C N+    F +C+Y P
Sbjct: 104 YTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCP 137

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ transporting ryanodine receptors. One member, DE or CRISP-1, has been shown to mediate gamete fusion by binding to the egg surface; a sequence motif in the SCP domain plays a role in that binding. Length = 138

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
cd05381	136	SCP_PR-1_like SCP_PR-1_like: SCP-like extracellula	100.0
cd05384	129	SCP_PRY1_like SCP_PRY1_like: SCP-like extracellula	100.0
cd05382	132	SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracel	100.0
cd05385	144	SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extrac	100.0
smart00198	144	SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extra	100.0
cd05383	138	SCP_CRISP SCP_CRISP: SCP-like extracellular protei	100.0
cd05559	136	SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular prot	100.0
cd00168	122	SCP SCP: SCP-like extracellular protein domain, fo	100.0
KOG3017	225	consensus Defense-related protein containing SCP d	100.0
cd05380	144	SCP_euk SCP_euk: SCP-like extracellular protein do	100.0
PF00188	124	CAP: Cysteine-rich secretory protein family; Inter	99.89
TIGR02909	127	spore_YkwD uncharacterized protein, YkwD family. M	99.86
cd05379	122	SCP_bacterial SCP_bacterial: SCP-like extracellula	99.74
COG2340	207	Uncharacterized protein with SCP/PR1 domains [Func	99.38
PF11054	254	Surface_antigen: Sporozoite TA4 surface antigen; I	80.3

>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily

Probab=100.00  E-value=2.3e-44  Score=246.02  Aligned_cols=134  Identities=49%  Similarity=0.977  Sum_probs=122.1

Q ss_pred             HHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCCCccceEEEccCCCCCHHHHHHHHHcCcCCCCC
Q 036505           26 EDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDY  105 (163)
Q Consensus        26 ~~iL~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~~~Geni~~~~~~~~~~~~~v~~W~~e~~~~~~  105 (163)
                      ++||+.||.+|+.++|++|+||++|++.||.+|++|+..|...|+.. .+|||+++.......+.++|+.|++|...|++
T Consensus         2 ~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~~~c~~~~~~~-~~GeNi~~~~~~~~~~~~~v~~W~~e~~~y~~   80 (136)
T cd05381           2 QDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRRGDCALVHSNG-PYGENLFWGSGGNWSAADAVASWVSEKKYYDY   80 (136)
T ss_pred             hHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhcCCCCcccCCC-CCCceEEEecCCCCCHHHHHHHHHhccccCCC
Confidence            68999999999999999999999999999999998888899988776 59999998765556789999999999999999


Q ss_pred             CCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCC-CCeeEEEEEEecCCCCCCCCCCC
Q 036505          106 NSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNN-NGTLNFVICNYDPRGNVFGQHPY  163 (163)
Q Consensus       106 ~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~-~~~~~~~vC~Y~p~gN~~g~~~Y  163 (163)
                      ..+.+.. +..++|||||||+++++||||++.|.. +..  ++||+|+|+||+.|++||
T Consensus        81 ~~~~~~~-~~~~~hftq~vw~~t~~vGCa~~~c~~~~~~--~vvC~Y~p~gn~~g~~~Y  136 (136)
T cd05381          81 DSNTCAA-GKMCGHYTQVVWRNTTRVGCARVTCDNGGGV--FIICNYDPPGNYIGQRPY  136 (136)
T ss_pred             CCCCcCC-CccchHHHHHHHHhcCEeceEEEEeCCCCcE--EEEEEeeCCCCCCCCCCC
Confidence            8877765 668999999999999999999999987 444  899999999999999999

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi

Probab=100.00  E-value=5.8e-40  Score=222.37  Aligned_cols=129  Identities=32%  Similarity=0.573  Sum_probs=112.8

Q ss_pred             CchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCCCccceEEEccCCCCCHHHHHHHHHcCcCC
Q 036505           23 NKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPL  102 (163)
Q Consensus        23 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~~~Geni~~~~~~~~~~~~~v~~W~~e~~~  102 (163)
                      +.|+.||+.||.+|+.++|+||+||++|+..||.||++|+..|.+.|+.. .+|||++...   .++.++|+.|++|..+
T Consensus         1 ~~~~~iL~~hN~~R~~~g~~~L~w~~~La~~A~~~a~~c~~~~~~~~~~~-~~geNi~~~~---~~~~~~v~~W~~e~~~   76 (129)
T cd05384           1 SFASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSYDCSGNLAHSGG-PYGENLAAGY---PSGTSAVDAWYDEIED   76 (129)
T ss_pred             CHHHHHHHHHHHHHHHcCCCcCccCHHHHHHHHHHHHHhccCCceecCCC-CCCcEEEEec---CCHHHHHHHHHhhhhh
Confidence            36899999999999999999999999999999999997766666888876 6999998754   2688999999999999


Q ss_pred             CCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEecCCCCCCC
Q 036505          103 YDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFG  159 (163)
Q Consensus       103 ~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~g  159 (163)
                      |+|..+.+   +..++|||||||+++++||||++.|+... ..++||+|+|+||+.|
T Consensus        77 y~~~~~~~---~~~~~h~tqmvw~~t~~vGCa~~~c~~~~-~~~~vC~Y~p~Gn~~g  129 (129)
T cd05384          77 YDYSNPGF---SEATGHFTQLVWKSTTQVGCAYKDCGGAW-GWYIVCEYDPAGNVIG  129 (129)
T ss_pred             CCCCCCCC---CCcccchhhhhhhccceeeeEEEEeCCCC-eEEEEEEEECCCCCCc
Confidence            99987544   34799999999999999999999998732 2389999999999876

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.

>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family

Probab=100.00  E-value=2.6e-40  Score=224.75  Aligned_cols=130  Identities=32%  Similarity=0.516  Sum_probs=116.0

Q ss_pred             CchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCCCccceEEEccC--CCCCHHHHHHHHHcCc
Q 036505           23 NKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQ--GEITATEFVKMCMDGK  100 (163)
Q Consensus        23 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~~~Geni~~~~~--~~~~~~~~v~~W~~e~  100 (163)
                      +++++||+.||++|+.++|++|+||++|+..||.||++|+..+.+.|+.+..+|||+++...  ....++++|+.|++|.
T Consensus         1 ~~~~~iL~~hN~~R~~~g~~~L~wd~~La~~A~~~a~~c~~~~~~~h~~~~~~GeN~~~~~~~~~~~~~~~~v~~W~~e~   80 (132)
T cd05382           1 DFQKECLDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLASSGKLQHSSPSGYGENLAYASGSGPDLTGEEAVDSWYNEI   80 (132)
T ss_pred             CHHHHHHHHHHHHHHHcCCCcCeeCHHHHHHHHHHHHHhhhcCceeCCCCCCCCceeEEecCCCCCCCHHHHHHHHHhcc
Confidence            46899999999999999999999999999999999998777777888877679999998764  3568899999999999


Q ss_pred             CCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEecCCCCC
Q 036505          101 PLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNV  157 (163)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~  157 (163)
                      .+|++..+..   +..++||+||||+++++||||++.|+.+.+  ++||+|+|+||+
T Consensus        81 ~~y~~~~~~~---~~~~gh~tqmvw~~t~~vGCa~~~~~~~~~--~~vC~Y~p~Gn~  132 (132)
T cd05382          81 KKYDFNKPGF---SSKTGHFTQVVWKSSTELGVGVAKSKKGCV--YVVARYRPAGNV  132 (132)
T ss_pred             ccCCCCCCCC---CCCCCCeEEeEecCCCceeeEEEEcCCCCE--EEEEEEeCCCCC
Confidence            9999985544   447999999999999999999999987666  899999999995

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.

>cd05385 SCP_GLIPR-1_like SCP_GLIPR-1_like: SCP-like extracellular protein domain, glioma pathogenesis-related protein (GLIPR)-like sub-family

Probab=100.00  E-value=2.1e-37  Score=213.52  Aligned_cols=125  Identities=30%  Similarity=0.573  Sum_probs=108.1

Q ss_pred             CchHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCccCCCC-----------CCccceEEEccCCC
Q 036505           23 NKPEDYLKAHNEARASVG-----VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQV-----------SKYSETIAWSNQGE   86 (163)
Q Consensus        23 ~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~-----------~~~Geni~~~~~~~   86 (163)
                      +++++||+.||.+|+.+.     |++|+||++||..||.||+    +|.+.|+..           ..+||||+......
T Consensus         1 ~f~~~~L~~HN~~R~~~~p~a~~m~~l~Wd~~La~~Aq~~a~----~C~~~~~~~~~~~~~~~~~~~~~GeNi~~~~~~~   76 (144)
T cd05385           1 EFIDECVRIHNELRSKVSPPAANMRYMTWDAALAKTARAWAK----KCKFKHNIYLGKRYKCHPKFTSVGENIWLGSIYI   76 (144)
T ss_pred             CHHHHHHHHHHHHHhhCCCCcccCcccccCHHHHHHHHHHHh----cCCCCCCchhhcccccccccCcccceeeecccCC
Confidence            468899999999999994     8999999999999999999    999887642           35899998876555


Q ss_pred             CCHHHHHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCC---eeEEEEEEecCC
Q 036505           87 ITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNG---TLNFVICNYDPR  154 (163)
Q Consensus        87 ~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~---~~~~~vC~Y~p~  154 (163)
                      ..+.++|+.||+|..+|+|..+.+..   .++|||||||+++++||||++.|+.+.   ...++||+|+|+
T Consensus        77 ~~~~~av~~W~~e~~~y~~~~~~~~~---~~ghftqmvw~~t~~vGCa~~~c~~~~~~~~~~~vVC~Y~p~  144 (144)
T cd05385          77 FSPKNAVTSWYNEGKFYDFDTNSCSR---VCGHYTQVVWATSYKVGCAVAFCPNLGGIPNAAIFVCNYAPA  144 (144)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCCCCC---cccCHHHHHHhhccccceEEEECCCCCCccccEEEEEeCCCC
Confidence            68899999999999999998776643   799999999999999999999998742   234899999984

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>smart00198 SCP SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains

Probab=100.00  E-value=1.9e-37  Score=213.61  Aligned_cols=127  Identities=31%  Similarity=0.611  Sum_probs=111.2

Q ss_pred             chHHHHHHHHHHHhhCC-----------CCCcccCHHHHHHHHHHHHhhcCCCCccCCCCCCccceEEEccC----CCCC
Q 036505           24 KPEDYLKAHNEARASVG-----------VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQ----GEIT   88 (163)
Q Consensus        24 ~~~~iL~~hN~~R~~~~-----------m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~~~Geni~~~~~----~~~~   88 (163)
                      .|+.||+.||.+|+.++           |++|+||++||..|+.+|+    +|...|+....+|||+++...    ....
T Consensus         2 ~~~~iL~~HN~~R~~~a~G~~~~p~a~~m~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~GeNi~~~~~~~~~~~~~   77 (144)
T smart00198        2 QQQEILDAHNKLRSQVAKGLLANPAASNMLKLTWDCELASSAQNWAN----QCPFGHSTPRGYGENLAWWSSSTDLPITY   77 (144)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHHHH----hCCCcCCCcCCcCcceEEecccCcccchh
Confidence            58899999999999999           9999999999999999999    999999887689999998653    2357


Q ss_pred             HHHHHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCC-eeEEEEEEecCC
Q 036505           89 ATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNG-TLNFVICNYDPR  154 (163)
Q Consensus        89 ~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~-~~~~~vC~Y~p~  154 (163)
                      +.++|+.||+|..+|++..+.+...+..++|||||||+++++||||++.|.++. ...++||+|+|+
T Consensus        78 ~~~av~~W~~e~~~y~~~~~~~~~~~~~~~hftqmvw~~s~~vGCa~~~c~~~~~~~~~~vC~Y~P~  144 (144)
T smart00198       78 ASAAVQLWYDEFQDYGYSSNTCKDTNGKIGHYTQVVWAKTYKVGCGVSNCPDGTKKKTVVVCNYDPP  144 (144)
T ss_pred             HHHHHHHHHHHHHHcCCCCCccccCccchhHHHHHHHHhcCCcceEEEECCCCCcceEEEEEecCCC
Confidence            888999999999999998876543245799999999999999999999998864 234899999995

Human glioma pathogenesis-related protein GliPR and the plant pathogenesis-related protein represent functional links between plant defense systems and human immune system. This family has no known function.

>cd05383 SCP_CRISP SCP_CRISP: SCP-like extracellular protein domain, CRISP-like sub-family

Probab=100.00  E-value=4.1e-37  Score=210.68  Aligned_cols=125  Identities=28%  Similarity=0.460  Sum_probs=107.6

Q ss_pred             chHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCccCCCC-------CCccceEEEccCCCCCHHH
Q 036505           24 KPEDYLKAHNEARASVG-----VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQV-------SKYSETIAWSNQGEITATE   91 (163)
Q Consensus        24 ~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~-------~~~Geni~~~~~~~~~~~~   91 (163)
                      .|+.||+.||.+|+.+.     |++|+||++||..||.||+    +|.+.|++.       ..+|||++... ......+
T Consensus         2 ~~~~il~~HN~~R~~~~p~a~~M~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~~~~~GeNl~~~~-~~~~~~~   76 (138)
T cd05383           2 VQKEIVDLHNELRRSVNPTASNMLKMEWNEEAAQNAKKWAN----TCNLTHSPPNGRTIGGITCGENIFMSS-YPRSWSD   76 (138)
T ss_pred             HHHHHHHHHHHHhccCCCCcccCcccEeCHHHHHHHHHHHh----cCCCcCCchhhcccCCCCcceeeeccC-CCCCHHH
Confidence            47899999999999975     6789999999999999999    999888753       24799999765 3357889


Q ss_pred             HHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEecCC
Q 036505           92 FVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPR  154 (163)
Q Consensus        92 ~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y~p~  154 (163)
                      +|+.||+|..+|+|+.+.+.. +..++|||||||+++++||||++.|..+....++||+|+|+
T Consensus        77 av~~W~~e~~~y~~~~~~~~~-~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~vC~Y~P~  138 (138)
T cd05383          77 VIQAWYDEYKDFKYGVGATPP-GAVVGHYTQIVWYKSYLVGCAVAYCPNSKYKYFYVCHYCPA  138 (138)
T ss_pred             HHHHHHHHHHhCCCCCCCCCC-CCchhhHHHHHHHhccccceEEEECCCCCcCEEEEEecCCC
Confidence            999999999999998876544 66899999999999999999999998853234899999995

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Involvement of CRISP in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as the CRISPs, are involved in, and is supported by sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how helothermine, a toxic peptide secreted by the beaded lizard, blocks Ca++ t

>cd05559 SCP_HrTT-1 SCP_HrTT-1: SCP-like extracellular protein domain in HrTT-1, a tail-tip epidermis marker in ascidians

Probab=100.00  E-value=4e-36  Score=205.32  Aligned_cols=123  Identities=30%  Similarity=0.536  Sum_probs=107.1

Q ss_pred             hHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCccCCCCC---CccceEEEccCCCCCHHHHHHHH
Q 036505           25 PEDYLKAHNEARASVG-----VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVS---KYSETIAWSNQGEITATEFVKMC   96 (163)
Q Consensus        25 ~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~---~~Geni~~~~~~~~~~~~~v~~W   96 (163)
                      |+.||+.||.+|+.++     |.+|+||++||..||.||+    +|.+.|++..   .+|||++....+...+.++|+.|
T Consensus         1 r~~il~~HN~~R~~~~p~a~~m~~L~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~v~~W   76 (136)
T cd05559           1 RLNLVDLHNQYRSQVSPPAANMLKMTWDEELAALAEAYAR----KCIWDHNPDRGHLRVGENLFISTGPPFDATKAVEDW   76 (136)
T ss_pred             CcHHHHHHHHHHhhCCCccccCcccccCHHHHHHHHHHHH----hccccCCCcccCCCceeeeeecCCCCCCHHHHHHHH
Confidence            5789999999999986     7789999999999999999    9999887643   69999998765556789999999


Q ss_pred             HcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCC-----CeeEEEEEEec
Q 036505           97 MDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNN-----GTLNFVICNYD  152 (163)
Q Consensus        97 ~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~-----~~~~~~vC~Y~  152 (163)
                      |+|..+|++..+.+.. +..++|||||||+++++||||++.|+.+     ....++||+|+
T Consensus        77 ~~e~~~y~~~~~~~~~-~~~~~hftqmvw~~t~~vGCa~~~c~~~~~~~~~~~~~~vC~Y~  136 (136)
T cd05559          77 NNEKLDYNYNTNTCAP-NKMCGHYTQVVWANTFKIGCGSYFCETLEVLRWENATLLVCNYG  136 (136)
T ss_pred             HHHHHhcCCCCCCCCC-CCcccchHHHHHhccCccceEEEECCCCCCCCcccCEEEEecCC
Confidence            9999999998877766 6689999999999999999999999752     12348999995

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes

Probab=100.00  E-value=1.8e-35  Score=198.47  Aligned_cols=118  Identities=30%  Similarity=0.569  Sum_probs=104.8

Q ss_pred             hHHHHHHHHHHHhhC-CCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCC---CccceEEEccCCCCCHHHHHHHHHcCc
Q 036505           25 PEDYLKAHNEARASV-GVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVS---KYSETIAWSNQGEITATEFVKMCMDGK  100 (163)
Q Consensus        25 ~~~iL~~hN~~R~~~-~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~---~~Geni~~~~~~~~~~~~~v~~W~~e~  100 (163)
                      +++||+.||.+|+.+ +|+||+||++|+..||.+|+    +|.+.|+...   .+|||++....+ .++.++|+.|++|.
T Consensus         1 ~~~il~~hN~~R~~~a~~~~L~wd~~La~~A~~~a~----~c~~~h~~~~~~~~~geNi~~~~~~-~~~~~~v~~W~~e~   75 (122)
T cd00168           1 AQEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYAN----RCIFKHSGEDGRGFVGENLAAGSYD-MTGPAAVQAWYNEI   75 (122)
T ss_pred             CcHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHHh----hccccCCCcccCCCCCceeEEecCC-CCHHHHHHHHHHHH
Confidence            367999999999999 99999999999999999999    9999887653   699999987643 67899999999999


Q ss_pred             CCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEec
Q 036505          101 PLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYD  152 (163)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y~  152 (163)
                      .+|+|.+...   +..++||+||||+++++||||++.|+.++.  ++||+|+
T Consensus        76 ~~y~~~~~~~---~~~~~h~~qmvw~~s~~vGca~~~~~~~~~--~~vC~Y~  122 (122)
T cd00168          76 KNYNFGQPGF---SSGTGHYTQVVWKNTTKIGCGVAFCGSNSY--YVVCNYG  122 (122)
T ss_pred             HhCCCCCCCC---CCCccchhhhhcccCCeeeeEEEEcCCCCE--EEEEeCc
Confidence            9999985544   347999999999999999999999997666  8999995

This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as

>KOG3017 consensus Defense-related protein containing SCP domain [Function unknown]

Probab=100.00  E-value=1e-34  Score=213.71  Aligned_cols=137  Identities=34%  Similarity=0.650  Sum_probs=117.5

Q ss_pred             CchHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCccCCC-----CCCccceEEEccCC------C
Q 036505           23 NKPEDYLKAHNEARASVG-----VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQ-----VSKYSETIAWSNQG------E   86 (163)
Q Consensus        23 ~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~-----~~~~Geni~~~~~~------~   86 (163)
                      +.++++++.||.+|..++     |++|+||++||..||.||+    +|.+.|+.     ...+|||+++....      .
T Consensus        40 ~~~~~~~~~hn~~r~~~~~~as~m~~m~Wd~~La~~Aq~~a~----~c~~~~~~~~~~~~~~~GeNl~~~~~~~~~~~~~  115 (225)
T KOG3017|consen   40 NLRSEILNGHNVARGAVGPPASNMMKLKWDDELAALAQNWAN----TCPFGHDKCVHTSFGPYGENLAWGWSSNPPLSLD  115 (225)
T ss_pred             HHHHHHHhhhHHhcCccCCchHhCccccCCHHHHHHHHHHHh----hCCcccCccccccCCCCcccceeeccCCCCcccc
Confidence            468889999999999999     9999999999999999999    89888764     44679999987653      1


Q ss_pred             CCHHHHHHHHHcCcCCCCCCCCcccCC--CCccchHHHHHHHhcCeeeEEEEEeCCCC---eeEEEEEEecCCCCCCC-C
Q 036505           87 ITATEFVKMCMDGKPLYDYNSNTCALN--GTKCAIYTQVVWRNSVRLGCAKERCNNNG---TLNFVICNYDPRGNVFG-Q  160 (163)
Q Consensus        87 ~~~~~~v~~W~~e~~~~~~~~~~~~~~--~~~~~~ftq~vw~~~~~vGCa~~~c~~~~---~~~~~vC~Y~p~gN~~g-~  160 (163)
                      ..+..+++.|+.|...|++.++.+...  +..++|||||||+++++||||++.|+++.   ...++||+|+|+||..+ +
T Consensus       116 ~~~~~a~~~w~~e~~~~~~~~~~~~~~~~~~~~gHyTQ~vw~~s~~vGCgv~~c~~~~~~~~~~~~vC~Y~p~g~~~~~~  195 (225)
T KOG3017|consen  116 TSGALAVEAWESEFQEYDWSSNTCSSADFGEGIGHYTQMVWAKSTKVGCGVVRCGNGSNGYNTVAVVCNYDPPGNNINGE  195 (225)
T ss_pred             ccHHHHHHHHHHHHHHccCcccccCcccCCCcceEEEEEEEeCCceeceeeccCCCCCCCcceEEEEEEeecCCCCcCCC
Confidence            567789999999999999999888742  56899999999999999999999999863   34589999999965555 5


Q ss_pred             CCC
Q 036505          161 HPY  163 (163)
Q Consensus       161 ~~Y  163 (163)
                      .||
T Consensus       196 ~~y  198 (225)
T KOG3017|consen  196 IPY  198 (225)
T ss_pred             CcC
Confidence            776

>cd05380 SCP_euk SCP_euk: SCP-like extracellular protein domain, as found mainly in eukaryotes

Probab=100.00  E-value=6.1e-34  Score=195.66  Aligned_cols=123  Identities=28%  Similarity=0.537  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHHHhhC------------CCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCC---CccceEEEccCC----
Q 036505           25 PEDYLKAHNEARASV------------GVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVS---KYSETIAWSNQG----   85 (163)
Q Consensus        25 ~~~iL~~hN~~R~~~------------~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~---~~Geni~~~~~~----   85 (163)
                      |+.||+.||.+|+.+            .|++|+||++||..|+.+|+    +|...|+...   .+|||++.....    
T Consensus         1 ~~~il~~HN~~R~~~a~g~~~~~p~a~~m~~l~Wd~~La~~A~~~a~----~C~~~~~~~~~~~~~GeNl~~~~~~~~~~   76 (144)
T cd05380           1 RQAILDAHNELRSKVAKGTYSLLPPASNMPKLKWDDELAALAQNWAK----TCVFEHSPCRNTGGVGQNLAAGSSTGSTV   76 (144)
T ss_pred             CcHHHHHHHHHHHHhhcCCCCCCCchhcCCcceeCHHHHHHHHHHHh----cCCCcCCcccCCCCCCcEEEEeccCCCCH
Confidence            468999999999999            69999999999999999999    9988887654   699999987643    


Q ss_pred             CCCHHHHHHHHHcCcCCCCCCCC-cccCCCCccchHHHHHHHhcCeeeEEEEEeCCC-CeeEEEEEEec
Q 036505           86 EITATEFVKMCMDGKPLYDYNSN-TCALNGTKCAIYTQVVWRNSVRLGCAKERCNNN-GTLNFVICNYD  152 (163)
Q Consensus        86 ~~~~~~~v~~W~~e~~~~~~~~~-~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~-~~~~~~vC~Y~  152 (163)
                      ...+.++|+.||+|...|++... .+.. +..++|||||||+++++||||++.|..+ ....++||+|+
T Consensus        77 ~~~~~~~v~~W~~e~~~~~~~~~~~~~~-~~~~~hftq~vw~~t~~vGCa~~~~~~~~~~~~~~vC~Y~  144 (144)
T cd05380          77 EELAEDAVNAWYNELKDYGFGSNPTNNF-NSGIGHFTQMVWAKTTKVGCAVARCGKDGGNKTVVVCNYS  144 (144)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCccccc-ccchhHHHHHHHHhcCccceEEEEeecCCceEEEEEecCC
Confidence            23688999999999999999875 2233 5689999999999999999999999863 23348999995

This family includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins

Probab=99.89  E-value=3.3e-23  Score=136.69  Aligned_cols=119  Identities=25%  Similarity=0.435  Sum_probs=85.6

Q ss_pred             HHHHHHHH-hhCCCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCCCccceEEEccCCCCCHH---HHHHHHHcCcCCCC
Q 036505           29 LKAHNEAR-ASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGEITAT---EFVKMCMDGKPLYD  104 (163)
Q Consensus        29 L~~hN~~R-~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~~~Geni~~~~~~~~~~~---~~v~~W~~e~~~~~  104 (163)
                      |+.||++| ...++++|+||++|+..|+.+|+    .|...+......|++............   ..++.|+.+...++
T Consensus         1 L~~~N~~R~~~~~~~~L~~d~~L~~~A~~~a~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (124)
T PF00188_consen    1 LDLHNEYRSAANGLPPLKWDPELAKAAQAHAK----YCANSNSLSHDSGENGSQSSRFGSYSDAQVTAVENWYSESKNYN   76 (124)
T ss_dssp             HHHHHHHHHBSSTBB--EE-HHHHHHHHHHHT----TTCSSEETTEESEEEEEEESSTTSHHHHHHHHHHHHHGGGGGEE
T ss_pred             CHHHHHHHHHhCCCCCCeeCHHHHHHHHHhhH----HhhhhcccccccCCCCccccccccccchhhHHHHHHHhcccccc
Confidence            78999999 88889999999999999999999    777644444467888876653322111   12899999999887


Q ss_pred             CCCC-cccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEe
Q 036505          105 YNSN-TCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNY  151 (163)
Q Consensus       105 ~~~~-~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y  151 (163)
                      +... ........++||+||+|.++++||||++.|+.+....++||.|
T Consensus        77 ~~~~~~~~~~~~~~~h~~~ll~~~~~~iGca~~~~~~~~~~~~~vc~y  124 (124)
T PF00188_consen   77 FQNQSIFNSWMNSPGHFTNLLWPNTTRIGCAVANCPNGKNNYYWVCNY  124 (124)
T ss_dssp             TTCSTEESSTTSTCHHHHHHT-TT--EEEEEEEEETTSSSEEEEEEEE
T ss_pred             cccchhhhccCCchhhhhhhhcCCCCEEEEEEEEeCCCCeeEEEEEEC
Confidence            7721 1111144789999999999999999999999876233999998

Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....

>TIGR02909 spore_YkwD uncharacterized protein, YkwD family

Probab=99.86  E-value=4.5e-21  Score=129.39  Aligned_cols=107  Identities=14%  Similarity=0.201  Sum_probs=92.1

Q ss_pred             CchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCC----------------CccceEEEccCCC
Q 036505           23 NKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVS----------------KYSETIAWSNQGE   86 (163)
Q Consensus        23 ~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~----------------~~Geni~~~~~~~   86 (163)
                      +.++++|+.||++|..++++||+||+.|++.|+.||++|+..+.+.|..+.                ..||||+.+.   
T Consensus         3 ~~e~~~l~~iN~~R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~~~H~~~~~~~~~~r~~~~g~~~~~~gENi~~g~---   79 (127)
T TIGR02909         3 AEEKRVVELVNAERAKNGLKPLKADPELSKVARLKSEDMRDKNYFSHTSPTYGSPFDMMKKFGISYRMAGENIAYGN---   79 (127)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHhCCcccccCCCCCCHHHHHHHcCCCcccceeeeeccC---
Confidence            457889999999999999999999999999999999999999999987531                3589998654   


Q ss_pred             CCHHHHHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEe
Q 036505           87 ITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNY  151 (163)
Q Consensus        87 ~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y  151 (163)
                      .++.++|+.|++                 ..+|+++|+|.+.+++|||++.++++++  |+|-.|
T Consensus        80 ~~~~~~v~~W~~-----------------S~gH~~nil~~~~~~~Gvg~~~~~~g~~--y~~q~F  125 (127)
T TIGR02909        80 STVEAVHNAWMN-----------------SPGHRANILNPNYTEIGVGYVEGGSGGI--YWTQMF  125 (127)
T ss_pred             CCHHHHHHHHHc-----------------CHhHHHHHcCCCcCeEeEEEEeCCCCCe--EEEEEe
Confidence            468899999965                 4689999999999999999999888765  666555

Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.

>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea

Probab=99.74  E-value=2.9e-17  Score=109.40  Aligned_cols=104  Identities=20%  Similarity=0.282  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCCC----------------ccceEEEccCCCCCH
Q 036505           26 EDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSK----------------YSETIAWSNQGEITA   89 (163)
Q Consensus        26 ~~iL~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~~----------------~Geni~~~~~~~~~~   89 (163)
                      +.+++.+|.+|..++++||+||.+|+..|+.||.+|+....+.|.....                +|||++...   ..+
T Consensus         2 ~~~~~~iN~~R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~~~h~~~~~~~~~~~~~~~g~~~~~~~eni~~~~---~~~   78 (122)
T cd05379           2 QEALELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGYFSHTGPDGSSPFDRARAAGYPYSSAGENIAYGY---STA   78 (122)
T ss_pred             hHHHHHHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhcCccCCcCCCCCCHHHHHHHcCCCcCccchhhcccC---CCH
Confidence            5789999999999999999999999999999999998877787764322                389988765   278


Q ss_pred             HHHHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEe
Q 036505           90 TEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNY  151 (163)
Q Consensus        90 ~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y  151 (163)
                      .++++.|++                 ..+|+.+|+|...+++|||+....++..  ++|..|
T Consensus        79 ~~~~~~w~~-----------------~~~H~~~ll~~~~~~~Gvg~~~~~~~~~--y~~~~f  121 (122)
T cd05379          79 EAAVDGWMN-----------------SPGHRANILNPDYTEVGVGVAYGGDGGY--YWVQVF  121 (122)
T ss_pred             HHHHHHHhC-----------------CHhHHHHHcCCCcceeeEEEEeCCCCCe--EEEEec
Confidence            899999965                 3679999999999999999999887655  666655

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.

>COG2340 Uncharacterized protein with SCP/PR1 domains [Function unknown]

Probab=99.38  E-value=2.5e-12  Score=93.55  Aligned_cols=101  Identities=16%  Similarity=0.231  Sum_probs=85.0

Q ss_pred             CCCchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCC----------------CccceEEEccC
Q 036505           21 AHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVS----------------KYSETIAWSNQ   84 (163)
Q Consensus        21 ~~~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~----------------~~Geni~~~~~   84 (163)
                      .++..+.+++.+|++|..+++++|+||.+|+..|+.|+.+|++...+.|..+.                .+||||+.+..
T Consensus        77 ~~~~~~~~~~~~N~~R~~~~l~~L~~n~~L~~~A~~~a~~m~~~g~~sH~~~~g~~~~~r~~~~g~~~~~agENIa~g~~  156 (207)
T COG2340          77 LAQFEKAVVAETNQERAKHGLPPLAWNATLAKAARNHARDMAKNGYFSHTSPTGETPADRLKKYGISGATAGENIAYGSN  156 (207)
T ss_pred             cchhHHHHHHHHHHHHhhcCCCCcccCHHHHHHHHHHHHHHHHcCCccccCCCCCCHHHHHHhCCcccccccceeecCCC
Confidence            34677889999999999999999999999999999999999999999996531                37999998762


Q ss_pred             CCCCHHHHHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCC
Q 036505           85 GEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNN  140 (163)
Q Consensus        85 ~~~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~  140 (163)
                      .  .+..+|+.|++                 +.||-.+|+-..-+.+|.|+..-..
T Consensus       157 ~--~~~~~v~~Wl~-----------------S~gH~~nll~~~~~~~Gv~~~~~~~  193 (207)
T COG2340         157 D--PPEAAVDGWLN-----------------SPGHRKNLLNPAYTEIGVGVAYDAS  193 (207)
T ss_pred             C--chHHHHHHhcC-----------------ChhhhhhccCcchhheeEEEEecCC
Confidence            2  22799999944                 5689999999999999999987543

>PF11054 Surface_antigen: Sporozoite TA4 surface antigen; InterPro: IPR021288 This family of proteins is a Eukaryotic family of surface antigens

Probab=80.30  E-value=22  Score=26.62  Aligned_cols=133  Identities=17%  Similarity=0.192  Sum_probs=75.3

Q ss_pred             hHHHHHHHHHHHhhCCCCCcc-----------c-CHHHHHHHHHHHHhhcCCCCccCC-CCC-----------CccceEE
Q 036505           25 PEDYLKAHNEARASVGVGPMS-----------W-VYKLADYSHKHAQKLKGNCNLKKP-QVS-----------KYSETIA   80 (163)
Q Consensus        25 ~~~iL~~hN~~R~~~~m~~L~-----------W-d~~La~~A~~~a~~~~~~C~~~~~-~~~-----------~~Geni~   80 (163)
                      .-++|+..|..|...|++...           . +++| .....|.+    -|...-. ..+           .-| +.+
T Consensus        35 ~~~CL~E~NaaReAAGL~~F~~A~~~~~~Lp~~~~~e~-~~~t~W~~----iC~~l~pt~~~~~~~~~~~~pf~~G-TyA  108 (254)
T PF11054_consen   35 SVECLSEMNAAREAAGLANFTEATSDDQKLPEPGSEEL-TDDTLWKK----ICEHLIPTQAEPAAEASKLNPFKDG-TYA  108 (254)
T ss_pred             chhHHHHHHHHHHhcCchhhHhhcCCcccCCCCCchhc-cchhhHHH----HHHHhcCCCCcchhhccccCcCCCC-ceE
Confidence            567999999999999955321           1 2333 44445555    5543222 111           112 222


Q ss_pred             Ec--cCCCCCHHHHHHHHHcCcCCCCCCCCcccCC-----CCccchHHHHHHHhcCe-eeEEEEEeCCC-----------
Q 036505           81 WS--NQGEITATEFVKMCMDGKPLYDYNSNTCALN-----GTKCAIYTQVVWRNSVR-LGCAKERCNNN-----------  141 (163)
Q Consensus        81 ~~--~~~~~~~~~~v~~W~~e~~~~~~~~~~~~~~-----~~~~~~ftq~vw~~~~~-vGCa~~~c~~~-----------  141 (163)
                      ..  .....+..++|+.|-...++|+--.+.....     ++..-.|.-|-..+++- .-|.+..|+..           
T Consensus       109 f~~lt~~~~dCk~aVdYWKaafknF~glPPs~~~~~~lYndqdnVSFVALYNPs~~atAdC~vvTCt~tt~~~~~~~~~~  188 (254)
T PF11054_consen  109 FKSLTDEKPDCKEAVDYWKAAFKNFTGLPPSKTAANKLYNDQDNVSFVALYNPSSSATADCRVVTCTQTTSNTAGGSRLQ  188 (254)
T ss_pred             eeeccCCCCChHHHHHHHHHHHhhcCCCCCChhhccccccCCcceeEEEEeCCCCCCcceeEEEeCCCCCccCCCccccc
Confidence            22  2346789999999976666664322211110     22234455555555444 56999999641           


Q ss_pred             -------CeeEEEEEEecCCCC-CCCCCCC
Q 036505          142 -------GTLNFVICNYDPRGN-VFGQHPY  163 (163)
Q Consensus       142 -------~~~~~~vC~Y~p~gN-~~g~~~Y  163 (163)
                             +..+-++|.=.|..- ..|..|+
T Consensus       189 ~d~~~~~~~gyAliCkT~P~Al~~~~saPF  218 (254)
T PF11054_consen  189 GDSDSESKTGYALICKTMPAALASDGSAPF  218 (254)
T ss_pred             CCCcccccceEEEEEecCchhhcCCCCCCC
Confidence                   234589999999754 4566664

One of the better characterised members of the family is the sporulated TA4 antigen. The TA4 gene encodes a single polypeptide of 25 kDa which contains a 17 and a 8kDa polypeptide [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
1cfe_A	135	P14a, Nmr, 20 Structures Length = 135		2e-30
1u53_A	196	Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein F		2e-06
1smb_A	154	Crystal Structure Of Golgi-Associated Pr-1 Protein		8e-06
4aiw_A	154	Gapr-1 With Bound Inositol Hexakisphosphate Length		2e-05
1rc9_A	221	Crystal Structure Of Stecrisp, A Member Of Crisp Fa		8e-05
1wvr_A	221	Crystal Structure Of A Crisp Family Ca-Channel Bloc		9e-05
3q2r_A	205	Crystal Structure Of Sglipr1 Soaked With Zinc Chlor		1e-04
2vzn_A	218	Crystal Structure Of The Major Allergen From Fire A		1e-04
1xta_A	221	Crystal Structure Of Natrin, A Snake Venom Crisp Fr		6e-04

>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures Length = 135

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/141 (48%), Positives = 84/141 (59%), Gaps = 7/141 (4%)
Query: 22  HNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAW 81
            N P+DYL  HN+ARA VGVGPMSW   LA  +  +A    G+CNL     S   E +A 
Sbjct: 1   QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIH---SGAGENLA- 56
Query: 82  SNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNN 141
              G+ T    V++ +  +P Y+Y +N C + G KC  YTQVVWRNSVRLGC + RCNN 
Sbjct: 57  KGGGDFTGRAAVQLWVSERPSYNYATNQC-VGGKKCRHYTQVVWRNSVRLGCGRARCNNG 115
Query: 142 GTLNFVICNYDPRGNVFGQHP 162
               F+ CNYDP GN  GQ P
Sbjct: 116 --WWFISCNYDPVGNWIGQRP 134

>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The Nematode Parasite Necator Americanus And A Vaccine Antigen For Human Hookworm Infection Length = 196

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 30/44 (68%), Gaps = 3/44 (6%)
Query: 120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           YTQ+VW+ +V+LGC  E C+N   + +V+C Y P GN+ G+  Y
Sbjct: 135 YTQMVWQETVKLGCYVEACSN---MCYVVCQYGPAGNMMGKDIY 175

>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein Length = 154

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 27  DYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLK-KPQVSK--YSETIAWSN 83
           + LKAHNE R   GV P+     L   + ++++ L     LK  P+ S+    E +AW++
Sbjct: 12  EVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQXGENLAWAS 71
Query: 84  QGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGT 143
             + T  E          + +YN        +    +T +VW+N+ ++G  K   ++  +
Sbjct: 72  YDQ-TGKEVADRWYS--EIKNYNFQQPGFT-SGTGHFTAMVWKNTKKMGVGKASASDGSS 127
Query: 144 LNFVICNYDPRGNV 157
             FV+  Y P GNV
Sbjct: 128 --FVVARYFPAGNV 139

>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate Length = 154

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 27  DYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLK-KPQVSKYS--ETIAWSN 83
           + LKAHNE R   GV P+     L   + ++++ L     LK  P+ S+    E +AW++
Sbjct: 12  EVLKAHNEYRQKHGVPPLKLXKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWAS 71
Query: 84  QGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGT 143
             + T  E          + +YN        +    +T +VW+N+ ++G  K   ++  +
Sbjct: 72  YDQ-TGKEVADRWYS--EIKNYNFQQPGFT-SGTGHFTAMVWKNTKKMGVGKASASDGSS 127
Query: 144 LNFVICNYDPRGNV 157
             FV+  Y P GNV
Sbjct: 128 --FVVARYFPAGNV 139

>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family From Trimeresurus Stejnegeri Refined At 1.6 Angstroms Resolution: Structual Relationship Of The Two Domains Length = 221

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQ 160
           YTQ+VW  S R+GCA   C ++    F +C Y P GN  G+
Sbjct: 116 YTQIVWYKSYRIGCAAAYCPSSPYSYFFVCQYCPAGNFIGK 156

>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker Derived From Snake Venom Length = 221

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 120 YTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQ 160
           YTQ+VW  S R GCA   C ++    F +C Y P GN+ G+
Sbjct: 116 YTQIVWYKSYRAGCAAAYCPSSKYSYFYVCQYCPAGNIIGK 156

>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride Length = 205

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 21/149 (14%)
Query: 26  EDYLKAHNEARASVGVGP-----MSWVYKLADYSHKHAQ--KLKGNCNLKKPQ-----VS 73
           +D ++ HN+ R+ V         M+W   LA  +   A   +   N  LK P       +
Sbjct: 20  KDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNCQFSHNTRLKPPHKLHPNFT 79
Query: 74  KYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGC 133
              E I   +    + +  +    D    YD+ +  C      C  YTQVVW +S ++GC
Sbjct: 80  SLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRICK---KVCGHYTQVVWADSYKVGC 136
Query: 134 AKERCNNNGTLNFV------ICNYDPRGN 156
           A + C      + +      ICNY P GN
Sbjct: 137 AVQFCPKVSGFDALSNGAHFICNYGPGGN 165

>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant Venom, Sol I 3 Length = 218

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 21/165 (12%)
Query: 18  LSSAHNKPEDYLKAHNEARASVGVGP-------MSWVYKLADYSHKHAQKLK---GNC-N 66
           + + HN+    + +  E R + G  P       ++W  +LA  + + A +       C N
Sbjct: 46  IVNKHNELRQRVASGKEMRGTNGPQPPAVKMPNLTWDPELATIAQRWANQCTFEHDACRN 105
Query: 67  LKKPQVSKYSETIAWSNQGEITATEFVKMC------MDGKPLYDYNSNTCALNGTKCAIY 120
           +++  V +     + S + + T  E + +        D + +  + S+   L   K   Y
Sbjct: 106 VERFAVGQNIAATSSSGKNKSTPNEMILLWYNEVKDFDNRWISSFPSDDNIL--MKVGHY 163
Query: 121 TQVVWRNSVRLGCAK--ERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           TQ+VW  + ++GC +   +  +N T ++++CNY P GNV G   Y
Sbjct: 164 TQIVWAKTTKIGCGRIMFKEPDNWTKHYLVCNYGPAGNVLGAPIY 208

>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From Taiwan Cobra (Naja Atra) Length = 221

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 10/145 (6%)
Query: 24  KPEDYLKAHNEARASVG-----VGPMSWVYKLADYSHKHAQKLKGN---CNLKKPQVSKY 75
           K ++ +  HN  R  V      +  M W  + A  + + A     N    NL+  +  + 
Sbjct: 14  KQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANTCSLNHSPDNLRVLEGIQC 73
Query: 76  SETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAK 135
            E+I  S+    T TE + +  D    + Y     +  G+    YTQ+VW  + R GCA 
Sbjct: 74  GESIYMSSNAR-TWTEIIHLWHDEYKNFVYGVGA-SPPGSVTGHYTQIVWYQTYRAGCAV 131
Query: 136 ERCNNNGTLNFVICNYDPRGNVFGQ 160
             C ++    F +C Y P GN  G+
Sbjct: 132 SYCPSSAWSYFYVCQYCPSGNFQGK 156

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
1cfe_A	135	Pathogenesis-related protein P14A; PR-1 proteins,	9e-46
4aiw_A	154	Golgi-associated plant pathogenesis-related prote;	1e-42
1qnx_A	209	VES V 5, antigen 5; allergen, vespid venom; 1.90A	2e-30
1xta_A	221	Natrin 1; crisp, serine protease, ION channel bloc	3e-30
3q2u_A	205	Glioma pathogenesis-related protein 1; crisp, memb	4e-30
2ddb_A	210	Pseudecin, channel blocker; crisp, snake venom, CN	2e-29
1u53_A	196	Secreted protein Asp-2; antibiotic; 1.56A {Necator	1e-28
2vzn_A	218	Venom allergen 3; major FIRE ANT allergen, SOL I 3	1e-25
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	2e-22
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	1e-21
3u3l_C	233	Tablysin 15; CAP domain, alphavbeta3 integrin, sal	9e-12
3s6s_A	206	AC-Asp-7; pathogenesis-related protein, SCP/TAPS,	5e-08

>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1 Length = 135

 Score =  145 bits (368), Expect = 9e-46
 Identities = 69/142 (48%), Positives = 84/142 (59%), Gaps = 7/142 (4%)

Query: 22  HNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAW 81
            N P+DYL  HN+ARA VGVGPMSW   LA  +  +A    G+CNL     S   E +A 
Sbjct: 1   QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIH---SGAGENLAK 57

Query: 82  SNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNN 141
              G+ T    V++ +  +P Y+Y +N C   G KC  YTQVVWRNSVRLGC + RCNN 
Sbjct: 58  GG-GDFTGRAAVQLWVSERPSYNYATNQCV-GGKKCRHYTQVVWRNSVRLGCGRARCNNG 115

Query: 142 GTLNFVICNYDPRGNVFGQHPY 163
               F+ CNYDP GN  GQ PY
Sbjct: 116 WW--FISCNYDPVGNWIGQRPY 135

>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding protein, golgi apparatus, myristate; HET: I6P; 1.50A {Homo sapiens} PDB: 1smb_A* Length = 154

 Score =  138 bits (349), Expect = 1e-42
 Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 9/148 (6%)

Query: 19  SSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLK---KPQVSKY 75
           S++     + LKAHNE R   GV P+     L   + ++++ L     LK   +    + 
Sbjct: 4   SASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQC 63

Query: 76  SETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAK 135
            E +AW+   + T  E           Y++         +    +T +VW+N+ ++G  K
Sbjct: 64  GENLAWA-SYDQTGKEVADRWYSEIKNYNFQQPGFT---SGTGHFTAMVWKNTKKMGVGK 119

Query: 136 ERCNNNGTLNFVICNYDPRGNVFGQHPY 163
              ++  +  FV+  Y P GNV  +  +
Sbjct: 120 ASASDGSS--FVVARYFPAGNVVNEGFF 145

>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula vulgaris} SCOP: d.111.1.1 Length = 209

 Score =  108 bits (272), Expect = 2e-30
 Identities = 33/163 (20%), Positives = 59/163 (36%), Gaps = 22/163 (13%)

Query: 23  NKPEDYLKAHNEARASVGVG-----------------PMSWVYKLADYSHKHAQKLKGNC 65
            + +D LK HN+ R  +  G                  + W  +LA  +   A + +   
Sbjct: 44  QEKQDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWANQCQYGH 103

Query: 66  NL-KKPQVSKYSETIAWSN---QGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYT 121
           +  +     +  + +A +           + VKM  D    Y+        +  K   YT
Sbjct: 104 DTCRDVAKYQVGQNVALTGSTAAKYDDPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHYT 163

Query: 122 QVVWRNSVRLGCAKERCNNNGTLN-FVICNYDPRGNVFGQHPY 163
           Q+VW N+  +GC   +         +++CNY P GN   +  Y
Sbjct: 164 QMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNEELY 206

>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra, toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A 1rc9_A 1wvr_A Length = 221

 Score =  108 bits (271), Expect = 3e-30
 Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 12/157 (7%)

Query: 17  HLSSAHNKPEDYLKAHNEARASVG-----VGPMSWVYKLADYSHKHAQKLK---GNCNLK 68
             +    K ++ +  HN  R  V      +  M W  + A  + + A          NL+
Sbjct: 7   ESTRRKKKQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWANTCSLNHSPDNLR 66

Query: 69  KPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNS 128
             +  +  E+I  S+    T TE + +  D    + Y        G+    YTQ+VW  +
Sbjct: 67  VLEGIQCGESIYMSS-NARTWTEIIHLWHDEYKNFVYGVGASP-PGSVTGHYTQIVWYQT 124

Query: 129 VRLGCAKERCNNNGTLNFVICNYDPRGNVFGQ--HPY 163
            R GCA   C ++    F +C Y P GN  G+   PY
Sbjct: 125 YRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGKTATPY 161

>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein; 1.85A {Homo sapiens} PDB: 3q2r_A Length = 205

 Score =  107 bits (269), Expect = 4e-30
 Identities = 38/167 (22%), Positives = 61/167 (36%), Gaps = 22/167 (13%)

Query: 15  TIHLSSAHNKPEDYLKAHNEARASVGVGP-----MSWVYKLADYSHKHAQKLK------- 62
            +      +  +D ++ HN+ R+ V         M+W   LA  +   A   +       
Sbjct: 9   ILPDIENEDFIKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWASNCQFSHNTRL 68

Query: 63  GNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQ 122
              +   P  +   E I   +    + +  +    D    YD+ +  C      C  YTQ
Sbjct: 69  KPPHKLHPNFTSLGENIWTGSVPIFSVSSAITNWYDEIQDYDFKTRIC---KKVCGHYTQ 125

Query: 123 VVWRNSVRLGCAKERCNNNGTLN------FVICNYDPRGNVFGQHPY 163
           VVW +S ++GCA + C      +        ICNY P GN     PY
Sbjct: 126 VVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGNY-PTWPY 171

>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin; 1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A Length = 210

 Score =  106 bits (265), Expect = 2e-29
 Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 14/154 (9%)

Query: 20  SAHNKPEDYLKAHNEARASV-----GVGPMSWVYKLADYSHKHAQKLK---GNCNLKKPQ 71
           +  N  ++ +  HN  R SV      +  M W    A  + + A +        N +   
Sbjct: 1   NKKNYQKEIVDKHNALRRSVKPTARNMLQMKWNSHAAQNAKRWADRCTFAHSPPNTRTVG 60

Query: 72  VSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRL 131
             +  E I  S+      +  V+   D    + Y        G+    YTQVVW  S  +
Sbjct: 61  KLRCGENIFMSS-QPFPWSGVVQAWYDEIKNFVYGIGAKP-PGSVIGHYTQVVWYKSHLI 118

Query: 132 GCAKERCNNNGTLNFVICNYDPRGNVFGQH--PY 163
           GCA  +C+++      +C Y P GN+ G    PY
Sbjct: 119 GCASAKCSSSKY--LYVCQYCPAGNIRGSIATPY 150

>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus} Length = 196

 Score =  103 bits (259), Expect = 1e-28
 Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 28/165 (16%)

Query: 23  NKPEDYLKAHNEARASVGVG-----------------PMSWVYKLADYSHKHAQKLKGNC 65
              + +L+ HN  R+SV +G                  M++  ++   +  +A++     
Sbjct: 15  EARQKFLEMHNSLRSSVALGQAKDGAGGNAPKAAKMKTMAYDCEVEKTAMNNAKQCVFKH 74

Query: 66  NLKKPQVSKYSETIAWS----NQGEITATEFVKMCMDGKPLYDYNSNTC---ALNGTKCA 118
           + +  Q     E I  S          A +  K             N      L      
Sbjct: 75  S-QPNQRKGLGENIFMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGVG 133

Query: 119 IYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
            YTQ+VW+ +V+LGC  E C+N     +V+C Y P GN+ G+  Y
Sbjct: 134 HYTQMVWQETVKLGCYVEACSNM---CYVVCQYGPAGNMMGKDIY 175

>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted, cross- reactivity; 3.05A {Solenopsis invicta} Length = 218

 Score = 96.5 bits (240), Expect = 1e-25
 Identities = 33/165 (20%), Positives = 60/165 (36%), Gaps = 27/165 (16%)

Query: 26  EDYLKAHNEARASVGVG-----------------PMSWVYKLADYSHKHAQKLKGNCNL- 67
           +  +  HNE R  V  G                  ++W  +LA  + + A +     +  
Sbjct: 44  DAIVNKHNELRQRVASGKEMRGTNGPQPPAVKMPNLTWDPELATIAQRWANQCTFEHDAC 103

Query: 68  KKPQVSKYSETIAW---SNQGEITATEFVKMCMDGKPLYDYNSNTCAL----NGTKCAIY 120
           +  +     + IA    S + + T  E + +  +    +D    +          K   Y
Sbjct: 104 RNVERFAVGQNIAATSSSGKNKSTPNEMILLWYNEVKDFDNRWISSFPSDDNILMKVGHY 163

Query: 121 TQVVWRNSVRLGCAKERCNNNGTLN--FVICNYDPRGNVFGQHPY 163
           TQ+VW  + ++GC +            +++CNY P GNV G   Y
Sbjct: 164 TQIVWAKTTKIGCGRIMFKEPDNWTKHYLVCNYGPAGNVLGAPIY 208

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus} Length = 424

 Score = 91.3 bits (226), Expect = 2e-22
 Identities = 34/172 (19%), Positives = 55/172 (31%), Gaps = 37/172 (21%)

Query: 22  HNKPEDYLKAHNEARASVGVG-----------------PMSWVYKLADYSHKHAQKLKGN 64
            +  + +L  HNE R+SV  G                  M +  ++   + +H  K    
Sbjct: 235 DSVRDTFLSVHNEFRSSVARGLEPDALGGNAPKAAKMLKMVYDCEVEASAIRHGNK---- 290

Query: 65  CNLK---KPQVSKYSETIAWSNQGEITATEFVKMCMDG----KPLYDYNSNTCAL----- 112
           C  +           E I  ++  +    +  K            Y    +         
Sbjct: 291 CVYQHSHGEDRPGLGENIYKTSVLKFDKNKAAKQASQLWWNELKEYGVGPSNVLTTALWN 350

Query: 113 -NGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
               +   YTQ+ W  + +LGCA   CN+     F +C Y P GN  G   Y
Sbjct: 351 RPNMQIGHYTQMAWDTTYKLGCAVVFCNDF---TFGVCQYGPGGNYMGHVIY 399

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus} Length = 424

 Score = 89.0 bits (220), Expect = 1e-21
 Identities = 24/160 (15%), Positives = 44/160 (27%), Gaps = 30/160 (18%)

Query: 26  EDYLKAHNEARASVGVGP----------------MSWVYKLADYSHKHAQKLKGNCNLKK 69
           + +L  HN AR  V  G                 +SW   +        Q     C    
Sbjct: 38  QAFLDFHNNARRRVAKGLEDSNSGKLNPAKNMYKLSWDCAMEQQLQDAIQS----CPSGF 93

Query: 70  PQVSKYSETIAW------SNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQV 123
             +   ++               +     +     G        +     G     ++ +
Sbjct: 94  AGIQGVAQNTMSWSSSGGYPDPSVKIEPTLSGWWSGAKKNGVGPDNKY-TGGGLFAFSNM 152

Query: 124 VWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY 163
           V+  + +LGCA + C        V C Y+  G +  Q  +
Sbjct: 153 VYSETTKLGCAYKVCGTK---LAVSCIYNGVGYITNQPMW 189

>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland, protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB: 3u3n_C* 3u3u_C* Length = 233

 Score = 60.1 bits (145), Expect = 9e-12
 Identities = 21/160 (13%), Positives = 42/160 (26%), Gaps = 23/160 (14%)

Query: 26  EDYLKAHNEARASVGVG-----------PMSWVYKLADYSHKHAQKLKGNCN-LKKPQVS 73
            + L   N+ R  V  G            + W  +LA  + +H +   G  +  +  +  
Sbjct: 42  NEILSKINDVRDHVAKGSWGLPVAARMKVVVWDAELAGLAKRHTKGCVGETHACRNTERF 101

Query: 74  KYSETIAWSNQGEITAT------EFVKMCMDGKPLYDY---NSNTCALNGTKCAIYTQVV 124
                + +   G+          + VK     K         +                +
Sbjct: 102 WLPGQLNFKYSGDKLPRIKELIDDAVKKGHLQKHNITREIIENYRENGPNGDVKELALAI 161

Query: 125 WRNSVRLGCAKERCNNNGTLNF-VICNYDPRGNVFGQHPY 163
                 +GC      +       + CN+    N  G+  Y
Sbjct: 162 SDRVTAVGCGLTTWEDGAKARALLTCNFSS-QNTRGRPVY 200

>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function; 2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A Length = 206

 Score = 49.3 bits (117), Expect = 5e-08
 Identities = 23/153 (15%), Positives = 43/153 (28%), Gaps = 37/153 (24%)

Query: 26  EDYLKAHNEARASVGVG------------PMSWVYKLADYSHKHAQKLKGNCNLKKPQVS 73
           E     HN  R  +  G             + +   L     + A+K             
Sbjct: 20  EAIDTFHNGLRQRIAKGEAEGYGPAREMYGLVYDCGLE----EEARKEIKLPGYAD---L 72

Query: 74  KYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGC 133
            +     +S   E +A   +K  ++      +++              QVV+  + R GC
Sbjct: 73  HHRGVTRFSGDYEGSAISALKEILE-----TFSA--------DKNSMRQVVYPKATRFGC 119

Query: 134 AKERCNNNGTLN---FVICNYDPRGNVFGQHPY 163
           +     N  T       +C YD +        +
Sbjct: 120 SGRLRRNKKTGMRRMDWVCVYDKKPK--DGESF 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
1cfe_A	135	Pathogenesis-related protein P14A; PR-1 proteins,	100.0
4aiw_A	154	Golgi-associated plant pathogenesis-related prote;	100.0
2ddb_A	210	Pseudecin, channel blocker; crisp, snake venom, CN	100.0
1qnx_A	209	VES V 5, antigen 5; allergen, vespid venom; 1.90A	100.0
1xta_A	221	Natrin 1; crisp, serine protease, ION channel bloc	100.0
3q2u_A	205	Glioma pathogenesis-related protein 1; crisp, memb	100.0
1u53_A	196	Secreted protein Asp-2; antibiotic; 1.56A {Necator	100.0
2vzn_A	218	Venom allergen 3; major FIRE ANT allergen, SOL I 3	100.0
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	100.0
3u3l_C	233	Tablysin 15; CAP domain, alphavbeta3 integrin, sal	100.0
3nt8_A	424	Ancylostoma secreted protein 1; pathogenesis relat	100.0
3s6s_A	206	AC-Asp-7; pathogenesis-related protein, SCP/TAPS,	100.0
4ifa_A	339	Extracellular protein containing A SCP domain; vac	99.74
4h0a_A	323	Uncharacterized protein; CAP protein family, cyste	99.52
3plv_C	21	66 kDa U4/U6.U5 small nuclear ribonucleoprotein C;	84.06

>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1

Probab=100.00  E-value=5.3e-49  Score=267.61  Aligned_cols=135  Identities=50%  Similarity=0.944  Sum_probs=126.1

Q ss_pred             CCchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCCCccceEEEccCCCCCHHHHHHHHHcCcC
Q 036505           22 HNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKP  101 (163)
Q Consensus        22 ~~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~~~Geni~~~~~~~~~~~~~v~~W~~e~~  101 (163)
                      ++.+++||+.||.+|+.++|++|+||++|+..||.||++|+++|.+.|+++   ||||+++. ...++.++|+.||+|..
T Consensus         1 ~~~~~~iL~~HN~~R~~~~~~~L~Wd~~La~~Aq~~A~~~a~~c~~~hs~~---GENla~~~-~~~~~~~~v~~W~~E~~   76 (135)
T 1cfe_A            1 QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGA---GENLAKGG-GDFTGRAAVQLWVSERP   76 (135)
T ss_dssp             CCSHHHHHHHHHHHHHHTTCCCCEECSHHHHHHHHHHHHHTTTCCSCSCSS---SBCCEECS-SSCCHHHHHHHHHTTGG
T ss_pred             CcHHHHHHHHHHHHHHHcCCCccCcCHHHHHHHHHHHHHHhcCCCcccCCC---CeEEEEec-CCCCHHHHHHHHHhHHh
Confidence            357899999999999999999999999999999999999999999999875   99999876 55789999999999999


Q ss_pred             CCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEecCCCCCCCCCCC
Q 036505          102 LYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY  163 (163)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~g~~~Y  163 (163)
                      +|+|..+.+.. +..++|||||||++|++||||++.|+++.+  ++||+|+|+||+.|++||
T Consensus        77 ~y~~~~~~~~~-~~~~gHfTQ~vW~~t~~vGCa~~~c~~~~~--~~VC~Y~p~GN~~g~~pY  135 (135)
T 1cfe_A           77 SYNYATNQCVG-GKKCRHYTQVVWRNSVRLGCGRARCNNGWW--FISCNYDPVGNWIGQRPY  135 (135)
T ss_dssp             GEEGGGTEECS-SSCCSSHHHHHCTTCCEEEEEEEECTTSSE--EEEEECSSCCSCTTSCCC
T ss_pred             hCCCCCCCcCC-CCcccceeeeEEccCcEEeEEEEEeCCCCE--EEEEEEeCCCCCCCCCCC
Confidence            99999988776 678999999999999999999999988766  999999999999999999

>4aiw_A Golgi-associated plant pathogenesis-related prote; lipid-binding protein, golgi apparatus, myristate; HET: I6P; 1.50A {Homo sapiens} PDB: 1smb_A*

Probab=100.00  E-value=1.5e-48  Score=270.79  Aligned_cols=139  Identities=24%  Similarity=0.433  Sum_probs=126.4

Q ss_pred             cCCCCchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCccCCC---CCCccceEEEccCCCCCHHHHHHH
Q 036505           19 SSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQ---VSKYSETIAWSNQGEITATEFVKM   95 (163)
Q Consensus        19 ~~~~~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~---~~~~Geni~~~~~~~~~~~~~v~~   95 (163)
                      +.+++++++||+.||.+|+.|+++||+||++|++.||.||++++.+|.+.|++   ...+||||++.. ...++.++|+.
T Consensus         4 s~~~~f~~~iL~~HN~~R~~~~~~~L~wd~~La~~Aq~~A~~~a~~~~~~hs~~~~~~~~GeNl~~~~-~~~~~~~~v~~   82 (154)
T 4aiw_A            4 SASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWAS-YDQTGKEVADR   82 (154)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHHHHTCCCCCHHHHTTSSEEEEEEES-SCCCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhhhcccccccccCCCCCCCeeeEecC-CCCCHHHHHHH
Confidence            44567899999999999999999999999999999999999999999999974   236899999876 34678999999


Q ss_pred             HHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEecCCCCCCCCCCC
Q 036505           96 CMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY  163 (163)
Q Consensus        96 W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~g~~~Y  163 (163)
                      ||+|..+|+|.++.+..   .+||||||||++|++||||++.|+++..  ++||+|+|+||+.|+.||
T Consensus        83 W~~E~~~y~~~~~~~~~---~~gHfTQ~VW~~t~~vGCg~a~c~~~~~--~vVC~Y~P~GN~~g~~~y  145 (154)
T 4aiw_A           83 WYSEIKNYNFQQPGFTS---GTGHFTAMVWKNTKKMGVGKASASDGSS--FVVARYFPAGNVVNEGFF  145 (154)
T ss_dssp             HHGGGGGCCTTSCSCCT---TTHHHHHHHCTTCCEEEEEEEECTTSCE--EEEEEEESCCCCCSTTHH
T ss_pred             HHHHhhhcccCCCCcCC---CcCCeeeeehhhhceeeeEEEEcCCCCE--EEEEEEeCCCccCCccch
Confidence            99999999999988865   6999999999999999999999999877  899999999999999776

>2ddb_A Pseudecin, channel blocker; crisp, snake venom, CNG channel, toxin; 1.90A {Pseudechis porphyriacus} PDB: 2epf_A 2dda_A

Probab=100.00  E-value=7.1e-42  Score=248.03  Aligned_cols=134  Identities=28%  Similarity=0.515  Sum_probs=118.6

Q ss_pred             CCchHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCccCCCCC-------CccceEEEccCCCCCH
Q 036505           22 HNKPEDYLKAHNEARASVG-----VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVS-------KYSETIAWSNQGEITA   89 (163)
Q Consensus        22 ~~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~-------~~Geni~~~~~~~~~~   89 (163)
                      ++++++||+.||.+|+.|+     |.+|+||++||..||.||+    +|.+.|++..       .+||||++... ..++
T Consensus         3 ~~~~~~iL~~HN~~R~~~~~~A~nM~~L~Wd~~La~~Aq~~A~----~C~~~Hs~~~~r~~~~~~~GENl~~~~~-~~~~   77 (210)
T 2ddb_A            3 KNYQKEIVDKHNALRRSVKPTARNMLQMKWNSHAAQNAKRWAD----RCTFAHSPPNTRTVGKLRCGENIFMSSQ-PFPW   77 (210)
T ss_dssp             -CHHHHHHHHHHHHHTTCSSCBSSCBCCEECHHHHHHHHHHHT----TTCCSCCCGGGSEETTEECEEEEEEESS-CCCH
T ss_pred             HHHHHHHHHHHHHHHHHcCCccccCcccccCHHHHHHHHHHHh----cCCCCCCCccccccCCCCCcceEEEEcC-CCCH
Confidence            4678999999999999997     7799999999999999999    9999998532       48999998763 3468


Q ss_pred             HHHHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEecCCCCCCCC--CCC
Q 036505           90 TEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQ--HPY  163 (163)
Q Consensus        90 ~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~g~--~~Y  163 (163)
                      .++|+.||+|..+|+|..+.+.. +..++|||||||+++++||||++.|+.+.+  ++||+|+|+||+.|+  +||
T Consensus        78 ~~av~~W~~E~~~y~~~~~~~~~-~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~--~~VC~Y~P~GN~~g~~~~pY  150 (210)
T 2ddb_A           78 SGVVQAWYDEIKNFVYGIGAKPP-GSVIGHYTQVVWYKSHLIGCASAKCSSSKY--LYVCQYCPAGNIRGSIATPY  150 (210)
T ss_dssp             HHHHHHHHGGGGGEETTTEESST-TSCCHHHHHHTCTTCCEEEEEEEEEETTEE--EEEEEEESCSSSTTCTTCSS
T ss_pred             HHHHHHHHHHhhhCCCCCCCCCC-CCcccchhhhhhhhccEeeEEEEEcCCCCE--EEEEEeeCCCCCCCCccCCC
Confidence            99999999999999998866554 668999999999999999999999988744  899999999999999  898

>1qnx_A VES V 5, antigen 5; allergen, vespid venom; 1.90A {Vespula vulgaris} SCOP: d.111.1.1

Probab=100.00  E-value=5.1e-42  Score=248.92  Aligned_cols=137  Identities=24%  Similarity=0.430  Sum_probs=116.0

Q ss_pred             CchHHHHHHHHHHHhhCC-----------------CCCcccCHHHHHHHHHHHHhhcCCCCccCCCC-----CCccceEE
Q 036505           23 NKPEDYLKAHNEARASVG-----------------VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQV-----SKYSETIA   80 (163)
Q Consensus        23 ~~~~~iL~~hN~~R~~~~-----------------m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~-----~~~Geni~   80 (163)
                      ++++.||+.||.+|+.|+                 |++|+||++||..||.||+    +|.+.|+..     ..+||||+
T Consensus        44 ~~~~~iL~~HN~~R~~~a~G~~~~~~~~~~p~A~~m~~L~Wd~~La~~Aq~~A~----~C~~~h~~~~~~~~~~~GeNl~  119 (209)
T 1qnx_A           44 QEKQDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWAN----QCQYGHDTCRDVAKYQVGQNVA  119 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCSTTCCCCCBSSCCCCEECHHHHHHHHHHHT----TCCCSCCSCCCCSSSCCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCccccCCCCCCCccccccccccCHHHHHHHHHHHh----cCcccCCCccCCCCCCCccEEE
Confidence            468899999999999983                 7899999999999999999    999999751     24899999


Q ss_pred             EccCC---CCCHHHHHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCe-eEEEEEEecCCCC
Q 036505           81 WSNQG---EITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGT-LNFVICNYDPRGN  156 (163)
Q Consensus        81 ~~~~~---~~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~-~~~~vC~Y~p~gN  156 (163)
                      +....   ...+.++|+.||+|..+|++.++.....+..++|||||||++|++||||++.|..+.. ..++||+|+|+||
T Consensus       120 ~~~~~~~~~~~~~~av~~W~~E~~~y~~~~~~~~~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~P~GN  199 (209)
T 1qnx_A          120 LTGSTAAKYDDPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGN  199 (209)
T ss_dssp             EEEESSSCCCCHHHHHHHHHGGGGGCCTTSCGGGSCHHHHHHHHHHTCTTCCEEEEEEEEEEETTEEEEEEEEEEESCCC
T ss_pred             EecccCCCcccHHHHHHHHHHhhhhcCCccCCCCCCCCcccchhhhhhhcCcEeeeEEEEEeCCCceeEEEEEEeCCCCC
Confidence            86533   2468899999999999999986532211246899999999999999999999986542 3589999999999


Q ss_pred             CCCCCCC
Q 036505          157 VFGQHPY  163 (163)
Q Consensus       157 ~~g~~~Y  163 (163)
                      +.|++||
T Consensus       200 ~~g~~~Y  206 (209)
T 1qnx_A          200 FKNEELY  206 (209)
T ss_dssp             CTTSCSS
T ss_pred             CCCCCCC
Confidence            9999998

>1xta_A Natrin 1; crisp, serine protease, ION channel blocking, cobra, toxin; 1.58A {Naja atra} PDB: 2giz_A 1xx5_A 3mz8_A 1rc9_A 1wvr_A

Probab=100.00  E-value=1.1e-41  Score=248.80  Aligned_cols=137  Identities=28%  Similarity=0.521  Sum_probs=120.0

Q ss_pred             CCCchHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCccCCCCC-------CccceEEEccCCCCC
Q 036505           21 AHNKPEDYLKAHNEARASVG-----VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVS-------KYSETIAWSNQGEIT   88 (163)
Q Consensus        21 ~~~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~-------~~Geni~~~~~~~~~   88 (163)
                      .++++++||+.||.+|+.|+     |++|+||++||+.||.||+    +|.+.|++..       .+||||++... ..+
T Consensus        11 ~~~~~~~iL~~HN~~R~~~~~~A~nM~~L~Wd~~La~~Aq~~A~----~C~~~Hs~~~~r~~~~~~~GENl~~~~~-~~~   85 (221)
T 1xta_A           11 RKKKQKEIVDLHNSLRRRVSPTASNMLKMEWYPEAASNAERWAN----TCSLNHSPDNLRVLEGIQCGESIYMSSN-ART   85 (221)
T ss_dssp             SHHHHHHHHHHHHHHHHTCSSCBSSCBCCEECHHHHHHHHHHHT----TTCCSCCCGGGCEETTEECEEEEEEESS-CCC
T ss_pred             CHHHHHHHHHHHHHHHHhcCCccccCccCccCHHHHHHHHHHHh----cCCCCCcCccccccCCCCCceEEEeecC-CCC
Confidence            34678999999999999997     7799999999999999999    9999998531       48999998763 346


Q ss_pred             HHHHHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEecCCCCCCCC--CCC
Q 036505           89 ATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQ--HPY  163 (163)
Q Consensus        89 ~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~g~--~~Y  163 (163)
                      +.++|+.||+|..+|+|..+.+.. +..+||||||||+++++||||++.|..+...+++||+|+|+||+.|+  +||
T Consensus        86 ~~~av~~W~~E~~~y~~~~~~~~~-~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~VC~Y~P~GN~~g~~~~pY  161 (221)
T 1xta_A           86 WTEIIHLWHDEYKNFVYGVGASPP-GSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYVCQYCPSGNFQGKTATPY  161 (221)
T ss_dssp             HHHHHHHHHGGGGGEETTTEESST-TCCCHHHHHHTCTTCCEEEEEEEECTTSSSSEEEEEEEESCCCCTTTTTCSS
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCC-CCchhHHHHHHHHhcCEeeEEEEEcCCCCccEEEEEEEeCCcCCCCCcCCCc
Confidence            899999999999999998866654 66899999999999999999999998753334899999999999999  898

>3q2u_A Glioma pathogenesis-related protein 1; crisp, membrane protein; 1.85A {Homo sapiens} PDB: 3q2r_A

Probab=100.00  E-value=3.7e-41  Score=243.78  Aligned_cols=137  Identities=28%  Similarity=0.509  Sum_probs=119.2

Q ss_pred             cCCCCchHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCccCCCC-----------CCccceEEEc
Q 036505           19 SSAHNKPEDYLKAHNEARASVG-----VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQV-----------SKYSETIAWS   82 (163)
Q Consensus        19 ~~~~~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~-----------~~~Geni~~~   82 (163)
                      ...++++++||+.||.+|+.++     |.+|+||++||..||.||+    +|.+.|+..           ..+||||+.+
T Consensus        13 ~~~~~f~~~~L~~HN~~R~~~~~~A~nM~~L~Wd~~La~~Aq~~A~----~C~~~h~~~~~~~~~~~~~~~~~GeNl~~~   88 (205)
T 3q2u_A           13 IENEDFIKDCVRIHNKFRSEVKPTASDMLYMTWDPALAQIAKAWAS----NCQFSHNTRLKPPHKLHPNFTSLGENIWTG   88 (205)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTCSSCBSSCBCCEECHHHHHHHHHHHT----TCBSSCCTTSSTTCCSSTTCSSCEEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCcccCccCccCHHHHHHHHHHHH----hCCCCCCccccccccccCCCCCCceEEEEc
Confidence            3345689999999999999997     7899999999999999999    999988642           3689999987


Q ss_pred             cCCCCCHHHHHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCC------CeeEEEEEEecCCCC
Q 036505           83 NQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNN------GTLNFVICNYDPRGN  156 (163)
Q Consensus        83 ~~~~~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~------~~~~~~vC~Y~p~gN  156 (163)
                      .....++.++|+.||+|..+|+|..+.+..   .++|||||||+++++||||++.|+..      ....++||+|+|+||
T Consensus        89 ~~~~~~~~~~v~~W~~E~~~y~~~~~~~~~---~~gHfTQ~VW~~t~~vGCa~~~c~~~~g~~~~~~~~~~VC~Y~P~GN  165 (205)
T 3q2u_A           89 SVPIFSVSSAITNWYDEIQDYDFKTRICKK---VCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGN  165 (205)
T ss_dssp             ETTTCCHHHHHHHHHGGGGGEETTTTEESS---CCHHHHHHTCTTCCEEEEEEEEESCCBTCSSCCSEEEEEEEEESCCC
T ss_pred             cCCCCCHHHHHHHHHhHHHhcCCCCCCccc---hhHHHHHHHhhcccEeeeEEEEcCCCcCcccccccEEEEEEEECCCC
Confidence            655678999999999999999999877643   79999999999999999999999852      134489999999999


Q ss_pred             CCCCCCC
Q 036505          157 VFGQHPY  163 (163)
Q Consensus       157 ~~g~~~Y  163 (163)
                      + |++||
T Consensus       166 ~-~~~pY  171 (205)
T 3q2u_A          166 Y-PTWPY  171 (205)
T ss_dssp             C-SSCSS
T ss_pred             c-CCCCC
Confidence            9 88888

>1u53_A Secreted protein Asp-2; antibiotic; 1.56A {Necator americanus}

Probab=100.00  E-value=3.2e-41  Score=242.54  Aligned_cols=137  Identities=26%  Similarity=0.490  Sum_probs=116.4

Q ss_pred             CCCCchHHHHHHHHHHHhhCC-----------------CCCcccCHHHHHHHHHHHHhhcCCCCccCCC---CCCccceE
Q 036505           20 SAHNKPEDYLKAHNEARASVG-----------------VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQ---VSKYSETI   79 (163)
Q Consensus        20 ~~~~~~~~iL~~hN~~R~~~~-----------------m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~---~~~~Geni   79 (163)
                      .++++++.||+.||.+|+.|+                 |++|+||++||..||.||+    +|.+.|+.   ...+||||
T Consensus        12 lt~~~~~~iL~~HN~~R~~~a~G~~~~~~g~~~p~A~nM~~L~Wd~~La~~Aq~~A~----~C~~~h~~~~~~~~~GeNl   87 (196)
T 1u53_A           12 MSEEARQKFLEMHNSLRSSVALGQAKDGAGGNAPKAAKMKTMAYDCEVEKTAMNNAK----QCVFKHSQPNQRKGLGENI   87 (196)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTCCBCTTSSBCCCBSSCBCCEECHHHHHHHHHHHT----TCCCCCCCGGGSTTCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCCcccCCCCcCCccccchhcccCHHHHHHHHHHHH----hCccCCCccccCCCCCeEE
Confidence            334578999999999999982                 6699999999999999999    99999984   33699999


Q ss_pred             EEccCCCC----CHHHHHHHHHcCcCCCCCCC-CcccCC--CCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEec
Q 036505           80 AWSNQGEI----TATEFVKMCMDGKPLYDYNS-NTCALN--GTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYD  152 (163)
Q Consensus        80 ~~~~~~~~----~~~~~v~~W~~e~~~~~~~~-~~~~~~--~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y~  152 (163)
                      ++......    .+.++|+.||+|..+|+|.. +.+...  +..++|||||||+++++||||++.|.. .+  ++||+|+
T Consensus        88 ~~~~~~~~~~~~~~~~~v~~W~~E~~~y~~~~~~~~~~~~~~~~~ghfTQ~VW~~t~~vGCa~~~c~~-~~--~~VC~Y~  164 (196)
T 1u53_A           88 FMSSDSGMDKAKAAEQASKAWFGELAEKGVGQNLKLTGGLFSRGVGHYTQMVWQETVKLGCYVEACSN-MC--YVVCQYG  164 (196)
T ss_dssp             EEESCTTCCHHHHHHHHHHHHHTHHHHHCCCSCCBCCHHHHTTTCHHHHHHTCTTCCEEEEEEEECSS-CE--EEEEEEE
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHHcCCCcccccCccccCccccchheeeecccCEEeeEEEEeCC-CE--EEEEEeC
Confidence            97653322    35889999999999999987 544311  457999999999999999999999976 44  8999999


Q ss_pred             CCCCCCCCCCC
Q 036505          153 PRGNVFGQHPY  163 (163)
Q Consensus       153 p~gN~~g~~~Y  163 (163)
                      |+||+.|++||
T Consensus       165 p~GN~~g~~~Y  175 (196)
T 1u53_A          165 PAGNMMGKDIY  175 (196)
T ss_dssp             SCCCCTTSBSS
T ss_pred             CCCCCCCCcCC
Confidence            99999999998

>2vzn_A Venom allergen 3; major FIRE ANT allergen, SOL I 3, secreted, cross- reactivity; 3.05A {Solenopsis invicta}

Probab=100.00  E-value=6.4e-41  Score=244.55  Aligned_cols=137  Identities=24%  Similarity=0.473  Sum_probs=114.2

Q ss_pred             CchHHHHHHHHHHHhhCC-----------------CCCcccCHHHHHHHHHHHHhhcCCCCccCCC-----CCCccceEE
Q 036505           23 NKPEDYLKAHNEARASVG-----------------VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQ-----VSKYSETIA   80 (163)
Q Consensus        23 ~~~~~iL~~hN~~R~~~~-----------------m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~-----~~~~Geni~   80 (163)
                      +++++||+.||.+|+.++                 |++|+||++||+.||.||+    +|.+.|+.     ...+||||+
T Consensus        41 ~~~~~iL~~HN~~R~~~a~G~~~~~~~~~~p~A~~m~~L~Wd~~La~~Aq~~A~----~C~~~Hs~c~~~~~~~~GeNl~  116 (218)
T 2vzn_A           41 AEKDAIVNKHNELRQRVASGKEMRGTNGPQPPAVKMPNLTWDPELATIAQRWAN----QCTFEHDACRNVERFAVGQNIA  116 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCCTTSCCCCBSCCCCCEECHHHHHHHHHHHT----TCCSSCCSCCCCSSSCCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccCCCCCCCchhhchhccCCHHHHHHHHHHHH----hCCcCCCCCCCCccCCCceEEE
Confidence            468899999999999983                 7899999999999999999    99999986     124899999


Q ss_pred             EccCC---CCCHHHHHHHHHcCcCCCCCCCC-cccC---CCCccchHHHHHHHhcCeeeEEEEEeCC-C-CeeEEEEEEe
Q 036505           81 WSNQG---EITATEFVKMCMDGKPLYDYNSN-TCAL---NGTKCAIYTQVVWRNSVRLGCAKERCNN-N-GTLNFVICNY  151 (163)
Q Consensus        81 ~~~~~---~~~~~~~v~~W~~e~~~~~~~~~-~~~~---~~~~~~~ftq~vw~~~~~vGCa~~~c~~-~-~~~~~~vC~Y  151 (163)
                      +....   .....++|+.||+|..+|++... .+..   .+..++|||||||++|++||||++.|.. + ....++||+|
T Consensus       117 ~~~~~~~~~~~~~~av~~W~~E~~~y~~~~~~~~~~~~~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~~~~~~~~~vVC~Y  196 (218)
T 2vzn_A          117 ATSSSGKNKSTPNEMILLWYNEVKDFDNRWISSFPSDDNILMKVGHYTQIVWAKTTKIGCGRIMFKEPDNWTKHYLVCNY  196 (218)
T ss_dssp             EEEECC-CCCCHHHHHHHHHGGGGGCCGGGSSSCCCCHHHHHHHHHHHHHTCTTCCEEEEEEEEEECTTSCEEEEEEEEE
T ss_pred             EEeccCCccchHHHHHHHHHHHHHhcCcccccCCCCCcccCCCcchHHHHHHHhcCEEeEEEEEEeCCCCeEEEEEEEEE
Confidence            87533   23567999999999999998842 1111   0246899999999999999999999976 3 3345899999


Q ss_pred             cCCCCCCCCCCC
Q 036505          152 DPRGNVFGQHPY  163 (163)
Q Consensus       152 ~p~gN~~g~~~Y  163 (163)
                      +|+||+.|++||
T Consensus       197 ~P~GN~~g~~~y  208 (218)
T 2vzn_A          197 GPAGNVLGAPIY  208 (218)
T ss_dssp             ESCCCCTTSCSS
T ss_pred             CCCCCCCCCccc
Confidence            999999999998

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus}

Probab=100.00  E-value=1.5e-39  Score=257.95  Aligned_cols=133  Identities=18%  Similarity=0.312  Sum_probs=115.6

Q ss_pred             CchHHHHHHHHHHHhhC--C--------------CCCcccCHHHHHHHHHHHHhhcCCCCccCCCCCCccceEEEccCC-
Q 036505           23 NKPEDYLKAHNEARASV--G--------------VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQG-   85 (163)
Q Consensus        23 ~~~~~iL~~hN~~R~~~--~--------------m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~~~Geni~~~~~~-   85 (163)
                      +.|+.||+.||++|+.+  |              |++|+||++||..||.||+    +|.+.|+....+|||++..... 
T Consensus        35 ~~~~~il~~HN~~R~~~A~G~~~~~~~~~p~A~nM~~L~Wd~eLa~~Aq~~a~----~C~~~h~~~~~~GeNl~~~~~~~  110 (424)
T 3nt8_A           35 SDRQAFLDFHNNARRRVAKGLEDSNSGKLNPAKNMYKLSWDCAMEQQLQDAIQ----SCPSGFAGIQGVAQNTMSWSSSG  110 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCBCSSSBCCCEESCBCCEECHHHHHHHHHHCT----TCCSSCCCCTTCEEEEEEEECTT
T ss_pred             HHHHHHHHHHHHHHHHHhCCcccCCCCCCcccccCCccccCHHHHHHHHHHHh----hCCCcCCCCCCceeeEEeccccC
Confidence            46889999999999999  2              8899999999999999999    9999999887899999876422 


Q ss_pred             -----CCCHHHHHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEecCCCCCCCC
Q 036505           86 -----EITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQ  160 (163)
Q Consensus        86 -----~~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~g~  160 (163)
                           ...+.++|+.||+|.++|++....... +..++|||||||+++++||||++.|+. .  +++||+|+|+||+.|+
T Consensus       111 ~~~~~~~~~~~~v~~W~~E~~~y~~~~~~~~~-~~~~ghfTqmvw~~t~~vGCa~~~c~~-~--~~~VC~Y~p~GN~~g~  186 (424)
T 3nt8_A          111 GYPDPSVKIEPTLSGWWSGAKKNGVGPDNKYT-GGGLFAFSNMVYSETTKLGCAYKVCGT-K--LAVSCIYNGVGYITNQ  186 (424)
T ss_dssp             CCSCGGGGHHHHHHHHHTHHHHHCCCTTCBCC-CTTCHHHHHHHCTTCCEEEEEEEEETT-E--EEEEEEESSCCCSTTC
T ss_pred             CcCCHHHHHHHHHHHHHHHHHHcCCcccccCC-CcchHHHHHHHHHhcCeeceEEEEeCC-c--EEEEEEECCCCCcccc
Confidence                 123689999999999999998643333 447899999999999999999999977 4  4899999999999999


Q ss_pred             CCC
Q 036505          161 HPY  163 (163)
Q Consensus       161 ~~Y  163 (163)
                      +||
T Consensus       187 ~~Y  189 (424)
T 3nt8_A          187 PMW  189 (424)
T ss_dssp             BSS
T ss_pred             ccc
Confidence            998

>3u3l_C Tablysin 15; CAP domain, alphavbeta3 integrin, salivary gland, protein BI; HET: PLM CIT; 1.57A {Tabanus yao} PDB: 3u3n_C* 3u3u_C*

Probab=100.00  E-value=2.9e-38  Score=232.59  Aligned_cols=136  Identities=14%  Similarity=0.177  Sum_probs=111.9

Q ss_pred             CCchHHHHHHHHHHHhhC-----------CCCCcccCHHHHHHHHHHHHhhcCCCCccCCC---C---CCccceEEEccC
Q 036505           22 HNKPEDYLKAHNEARASV-----------GVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQ---V---SKYSETIAWSNQ   84 (163)
Q Consensus        22 ~~~~~~iL~~hN~~R~~~-----------~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~---~---~~~Geni~~~~~   84 (163)
                      +++++.||+.||.+|+.+           .|++|+||++||..||.||+    +|.+.|+.   .   ..+|||++....
T Consensus        38 ~~~~~~il~~HN~~R~~va~G~~~~P~A~nM~~L~Wd~~La~~Aq~~a~----~C~~~h~~c~~~~~~~~~Gen~~~~~~  113 (233)
T 3u3l_C           38 KEHRNEILSKINDVRDHVAKGSWGLPVAARMKVVVWDAELAGLAKRHTK----GCVGETHACRNTERFWLPGQLNFKYSG  113 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTTCCCBSSCBCCEECHHHHHHHHHHHT----TCCSCCCCBCCCSSCSSCEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCccccCCccEECHHHHHHHHHHHH----hCCCCCCcccccCcCCcCeEEEEEecC
Confidence            457899999999999999           49999999999999999999    99999875   2   258998876543


Q ss_pred             CC-C----CHHHHHHHHHcCcCCCCCCC-C---cccCCCCccchHHHHHHHhcCeeeEEEEEeCCCC-eeEEEEEEecCC
Q 036505           85 GE-I----TATEFVKMCMDGKPLYDYNS-N---TCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNG-TLNFVICNYDPR  154 (163)
Q Consensus        85 ~~-~----~~~~~v~~W~~e~~~~~~~~-~---~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~-~~~~~vC~Y~p~  154 (163)
                      .. .    .+.++|+.||+|.++|++.. +   .... +..++|||||||++|++||||++.|..++ ...++||+|+| 
T Consensus       114 ~~~~~~~~~~~~av~~W~~E~~~y~~~~~~~~~~~~~-~~~~gHfTQmVW~~t~~vGCa~~~c~~~~~~~~~~VC~Y~p-  191 (233)
T 3u3l_C          114 DKLPRIKELIDDAVKKGHLQKHNITREIIENYRENGP-NGDVKELALAISDRVTAVGCGLTTWEDGAKARALLTCNFSS-  191 (233)
T ss_dssp             SSCCCHHHHHHHHHHHHHGGGGTCCHHHHHSCCSCC---CCCHHHHHHTCTTCCEEEEEEEEEEETTEEEEEEEEEESC-
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhhhCHHHHhcCCCccc-ccchhhhHHHhhhcCCeeeeEEEEEEcCCeeEEEEEEECCC-
Confidence            22 2    25789999999999998653 1   1112 45799999999999999999999998653 34589999997 


Q ss_pred             CCCCCCCCC
Q 036505          155 GNVFGQHPY  163 (163)
Q Consensus       155 gN~~g~~~Y  163 (163)
                      ||+.|++||
T Consensus       192 GN~~g~~~Y  200 (233)
T 3u3l_C          192 QNTRGRPVY  200 (233)
T ss_dssp             CCCTTSCSS
T ss_pred             CCCCCCcee
Confidence            899999998

>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus}

Probab=100.00  E-value=4.3e-37  Score=243.80  Aligned_cols=135  Identities=24%  Similarity=0.445  Sum_probs=115.6

Q ss_pred             CCchHHHHHHHHHHHhhCC-----------------CCCcccCHHHHHHHHHHHHhhcCCCCccCCCC---CCccceEEE
Q 036505           22 HNKPEDYLKAHNEARASVG-----------------VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQV---SKYSETIAW   81 (163)
Q Consensus        22 ~~~~~~iL~~hN~~R~~~~-----------------m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~---~~~Geni~~   81 (163)
                      +++++.||+.||.+|+.++                 |.+|+||++||+.||.||+    +|.+.|+..   ..+||||+.
T Consensus       235 ~~~~~~iL~~HN~~R~~~a~G~~~~~~~~~~p~A~nM~~L~Wd~~La~~Aq~~a~----~C~~~h~~~~~~~~~GeNl~~  310 (424)
T 3nt8_A          235 DSVRDTFLSVHNEFRSSVARGLEPDALGGNAPKAAKMLKMVYDCEVEASAIRHGN----KCVYQHSHGEDRPGLGENIYK  310 (424)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSBCTTSSBCCCBSSCBCCEECHHHHHHHHHHHT----TCCSSCCCTTTSTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCCCCCchhceEhHHHHHHHHHHHH----hCcccCCCccccCccceeEEe
Confidence            4579999999999999986                 4489999999999999999    999999864   269999998


Q ss_pred             ccCCCC----CHHHHHHHHHcCcCCCCCCCCc-c-----cCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEe
Q 036505           82 SNQGEI----TATEFVKMCMDGKPLYDYNSNT-C-----ALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNY  151 (163)
Q Consensus        82 ~~~~~~----~~~~~v~~W~~e~~~~~~~~~~-~-----~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y  151 (163)
                      ......    .+.++|+.||+|.++|+|.... +     ...+..++|||||||+++++||||++.|+.+ +  ++||+|
T Consensus       311 ~~~~~~~~~~~~~~~v~~W~~E~~~y~~~~~~~~~~~~~~~~~~~~gHfTQ~VW~~t~~vGCa~~~c~~~-~--~~VC~Y  387 (424)
T 3nt8_A          311 TSVLKFDKNKAAKQASQLWWNELKEYGVGPSNVLTTALWNRPNMQIGHYTQMAWDTTYKLGCAVVFCNDF-T--FGVCQY  387 (424)
T ss_dssp             ESSTTCCHHHHHHHHHHHHHTHHHHTCCCTTCBCCHHHHTCTTCCCHHHHHHHCTTCCEEEEEEEECSSS-E--EEEEEE
T ss_pred             cccCCCchHHHHHHHHHHHHHHHHhcCCCCCcccccccccCCCCcccchHHHhhhhcceeeeEEEEeCCC-e--EEEEEe
Confidence            764433    4789999999999999987543 1     1114579999999999999999999999874 4  899999


Q ss_pred             cCCCCCCCCCCC
Q 036505          152 DPRGNVFGQHPY  163 (163)
Q Consensus       152 ~p~gN~~g~~~Y  163 (163)
                      +|+||+.|++||
T Consensus       388 ~p~GN~~g~~~Y  399 (424)
T 3nt8_A          388 GPGGNYMGHVIY  399 (424)
T ss_dssp             ESCCCCTTSBSS
T ss_pred             cCCCCcCCCCCC
Confidence            999999999998

>3s6s_A AC-Asp-7; pathogenesis-related protein, SCP/TAPS, unknown function; 2.40A {Ancylostoma caninum} PDB: 3s6v_A 3s6u_A

Probab=100.00  E-value=3.1e-33  Score=200.64  Aligned_cols=117  Identities=14%  Similarity=0.143  Sum_probs=93.0

Q ss_pred             CCCchHHHHHHHHHHHhhCC------------CCCcccCHHHHHHHHHHHHhhcCCCCccCCCCCCccceEEEccCC--C
Q 036505           21 AHNKPEDYLKAHNEARASVG------------VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQG--E   86 (163)
Q Consensus        21 ~~~~~~~iL~~hN~~R~~~~------------m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~~~Geni~~~~~~--~   86 (163)
                      .+++|+.||+.||.+|+.++            |.+|+||++||..||.||+     |. .++..  .|||++..+..  .
T Consensus        15 t~~~~~~il~~HN~~R~~va~G~~~~~p~A~nM~~l~Wd~eLa~~Aq~~A~-----C~-~~~~~--~GeNl~~~sg~~~~   86 (206)
T 3s6s_A           15 DRPFREAIDTFHNGLRQRIAKGEAEGYGPAREMYGLVYDCGLEEEARKEIK-----LP-GYADL--HHRGVTRFSGDYEG   86 (206)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCSTTSCSCCCCBCCEEEHHHHHHHHHHHH-----ST-THHHH--TTCEEEEEEEECSS
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCCCCCCcchhhcCcCCchHHHHHHHHHhhc-----CC-CCCCC--CCcEEEEecCCCCc
Confidence            34578999999999999874            7789999999999999998     65 33222  39999654322  2


Q ss_pred             CCH--HHHHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCC---CCeeEEEEEEecCCCCCCCCC
Q 036505           87 ITA--TEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNN---NGTLNFVICNYDPRGNVFGQH  161 (163)
Q Consensus        87 ~~~--~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~---~~~~~~~vC~Y~p~gN~~g~~  161 (163)
                      ...  .++|+.||+|                .++|||||||++|++||||++.|++   +...+++||+|+|+|  .|++
T Consensus        87 ~~~~~~~av~~W~~E----------------~~gHfTQmVW~~Tt~VGCa~~~C~~~~~~~~~~~vVCnY~p~G--~g~~  148 (206)
T 3s6s_A           87 SAISALKEILETFSA----------------DKNSMRQVVYPKATRFGCSGRLRRNKKTGMRRMDWVCVYDKKP--KDGE  148 (206)
T ss_dssp             CHHHHHHHHHHHHTT----------------CHHHHHHHHCTTCCEEEEEEEECC-------EEEEEEEESCCC--CTTC
T ss_pred             cchhHHHHHHHHHhh----------------hhhhHHHHHHHhhceeeEEEEEecCcCCCCceEEEEEEeCCCC--CCCC
Confidence            223  3899999999                2789999999999999999999962   222458999999998  8999


Q ss_pred             CC
Q 036505          162 PY  163 (163)
Q Consensus       162 ~Y  163 (163)
                      ||
T Consensus       149 ~Y  150 (206)
T 3s6s_A          149 SF  150 (206)
T ss_dssp             CC
T ss_pred             Cc
Confidence            98

>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis}

Probab=99.74  E-value=6.6e-18  Score=129.39  Aligned_cols=93  Identities=14%  Similarity=0.151  Sum_probs=83.7

Q ss_pred             chHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCC----------------CccceEEEccCCCC
Q 036505           24 KPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVS----------------KYSETIAWSNQGEI   87 (163)
Q Consensus        24 ~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~----------------~~Geni~~~~~~~~   87 (163)
                      +.+++|++||.+|..+|++||+||..|++.|+.||++|+.+|.+.|..+.                .+||||+.+.   .
T Consensus       220 ~e~~vl~lvN~~Ra~~Gl~pL~~d~~L~~aAq~hA~dMa~~~~fsH~~~~G~~~~~R~~~~G~~~~~~GENIA~G~---~  296 (339)
T 4ifa_A          220 NMQQIFDLTNIIRSRHNLPLLAWDQQTADVAIGHSKDMKDNNYFSHDSPTLGTLGDRLQRGKVGFQLAGENIAAQH---S  296 (339)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHHHHTCCSSSBTTTBCHHHHHHHTTCCCSEEEEEEEESC---S
T ss_pred             HHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHhhcCCeecCCCCCCCHHHHHHHcCCCcCceeEEEEEeC---C
Confidence            46789999999999999999999999999999999999999999996531                3699999876   4


Q ss_pred             CHHHHHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEE
Q 036505           88 TATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKE  136 (163)
Q Consensus        88 ~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~  136 (163)
                      ++.++|+.|++                 +.||+++|+|.+.++||+|+.
T Consensus       297 s~~~av~~Wmn-----------------SpGHr~NIL~~~~t~iGvGv~  328 (339)
T 4ifa_A          297 DGVAALQGWLN-----------------SEGHRKNLLNEQFTGLGVGVY  328 (339)
T ss_dssp             SHHHHHHHHHT-----------------SHHHHHHHTCTTCCEEEEEEE
T ss_pred             CHHHHHHHHhC-----------------CHhHHHHHhCCCCCEEEEEEE
Confidence            68899999975                 578999999999999999986

>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}

Probab=99.52  E-value=4e-14  Score=108.13  Aligned_cols=93  Identities=11%  Similarity=0.100  Sum_probs=75.9

Q ss_pred             chHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCccCCCC---------------CCccceEEEccCCCCC
Q 036505           24 KPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQV---------------SKYSETIAWSNQGEIT   88 (163)
Q Consensus        24 ~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~---------------~~~Geni~~~~~~~~~   88 (163)
                      ..+++|+++|.+|..+|++||+||..|+..|+.||.+|+......|++.               ..+||||+.+.   .+
T Consensus       205 ~e~~il~liN~~R~~~GL~pL~~d~~L~~aA~~ha~dma~~~~~h~~~~g~~~~~R~~~~g~~~~~~gENIA~g~---~~  281 (323)
T 4h0a_A          205 QLISLYEVTNEMRKLKGLKPLKINSDLAHIASNNLYEATSNGSDSVEFTEDALRGQLDKNHVTYKTTAQNVGYAF---ND  281 (323)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHTC------CCCHHHHHHHHHHTTCCCSEEEEEEEESC---CS
T ss_pred             HHHHHHHHHHHHHHHcCCcccCccHhHHHHHHHHHHHHhhCCCCCcCCCCCCHHHHHHHcCCCcCeeeeEEecCC---CC
Confidence            3467999999999999999999999999999999999986544433321               14689999876   47


Q ss_pred             HHHHHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEE
Q 036505           89 ATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKE  136 (163)
Q Consensus        89 ~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~  136 (163)
                      +.++|+.|++                 +.||..+|+..+.+++|+|+.
T Consensus       282 ~~~vv~~Wmn-----------------SpgHR~NiL~~~~t~iGvGv~  312 (323)
T 4h0a_A          282 VPTLIHSWMN-----------------SDIHRSRLLNSKYDEMGGDVM  312 (323)
T ss_dssp             HHHHHHHHHT-----------------SHHHHHHHTCSSCCEEEEEEE
T ss_pred             HHHHHHHHHc-----------------CHHHHHHHcCCCCCEEEEEEE
Confidence            8999999975                 578999999999999999986

>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}

Probab=84.06  E-value=1  Score=19.62  Aligned_cols=17  Identities=35%  Similarity=0.567  Sum_probs=14.4

Q ss_pred             HHHHHHHHhhCCCCCcc
Q 036505           29 LKAHNEARASVGVGPMS   45 (163)
Q Consensus        29 L~~hN~~R~~~~m~~L~   45 (163)
                      ++..|..|.+.||.|+.
T Consensus         4 iEEtnk~r~~lGLkplp   20 (21)
T 3plv_C            4 IEETNELRASLGLKLIP   20 (26)
T ss_dssp             HHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHcCCCCCC
Confidence            46789999999998873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	163
d1cfea_	135	d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1	4e-31
d1smba_	149	d.111.1.1 (A:) Golgi-associated PR-1 protein {Huma	6e-24
d1rc9a1	164	d.111.1.1 (A:1-164) Cysteine-rich secretory protei	7e-24
d1qnxa_	209	d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jac	8e-22

>d1cfea_ d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1) {Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]} Length = 135

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Pathogenesis-related protein 1 (PR1)
species: Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]

 Score =  107 bits (267), Expect = 4e-31
 Identities = 66/141 (46%), Positives = 81/141 (57%), Gaps = 7/141 (4%)

Query: 23  NKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWS 82
           N P+DYL  HN+ARA VGVGPMSW   LA  +  +A    G+CNL      +        
Sbjct: 2   NSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGAGEN----LAK 57

Query: 83  NQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNG 142
             G+ T    V++ +  +P Y+Y +N C   G KC  YTQVVWRNSVRLGC + RCNN  
Sbjct: 58  GGGDFTGRAAVQLWVSERPSYNYATNQCV-GGKKCRHYTQVVWRNSVRLGCGRARCNNGW 116

Query: 143 TLNFVICNYDPRGNVFGQHPY 163
              F+ CNYDP GN  GQ PY
Sbjct: 117 W--FISCNYDPVGNWIGQRPY 135

>d1smba_ d.111.1.1 (A:) Golgi-associated PR-1 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Golgi-associated PR-1 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.2 bits (220), Expect = 6e-24
 Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 7/147 (4%)

Query: 19  SSAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSET 78
           S++     + LKAHNE R   GV P+     L   + ++++ L     LK    S   + 
Sbjct: 1   SASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQC 60

Query: 79  IA--WSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKE 136
                    + T  E           Y++         +    +T +VW+N+ ++G  K 
Sbjct: 61  GENLAWASYDQTGKEVADRWYSEIKNYNFQQPGF---TSGTGHFTAMVWKNTKKMGVGKA 117

Query: 137 RCNNNGTLNFVICNYDPRGNVFGQHPY 163
             ++  +  FV+  Y P GNV  +  +
Sbjct: 118 SASDGSS--FVVARYFPAGNVVNEGFF 142

>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein (SteCRISP) {Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]} Length = 164

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Cysteine-rich secretory protein (SteCRISP)
species: Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]

 Score = 89.6 bits (221), Expect = 7e-24
 Identities = 37/148 (25%), Positives = 57/148 (38%), Gaps = 12/148 (8%)

Query: 26  EDYLKAHNEARASVGVGP-----MSWVYKLADYSHKHAQKLKGNCNL---KKPQVSKYSE 77
            + +  HN  R SV         M W  + AD + + A +   + +    +  +  K  E
Sbjct: 16  NEIVDLHNSLRRSVNPTASNMLRMEWYPEAADNAERWAYRCIESHSSYESRVIEGIKCGE 75

Query: 78  TIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKER 137
            I  S    +  T+ +    D    + Y              YTQ+VW  S R+GCA   
Sbjct: 76  NIYMSP-YPMKWTDIIHAWHDEYKDFKYGVGADP-PNAVTGHYTQIVWYKSYRIGCAAAY 133

Query: 138 CNNNGTLNFVICNYDPRGNVFGQ--HPY 163
           C ++    F +C Y P GN  G+   PY
Sbjct: 134 CPSSPYSYFFVCQYCPAGNFIGKTATPY 161

>d1qnxa_ d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]} Length = 209

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Insect allergen 5 (AG5)
species: Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]

 Score = 85.3 bits (210), Expect = 8e-22
 Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 22/160 (13%)

Query: 26  EDYLKAHNEARASVGVG-----------------PMSWVYKLADYSHKHAQKLKGNCNL- 67
           +D LK HN+ R  +  G                  + W  +LA  +   A + +   +  
Sbjct: 47  QDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWANQCQYGHDTC 106

Query: 68  ---KKPQVSKYSETIAWSNQGEITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVV 124
               K QV +       +        + VKM  D    Y+        +  K   YTQ+V
Sbjct: 107 RDVAKYQVGQNVALTGSTAAKYDDPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHYTQMV 166

Query: 125 WRNSVRLGCAKERCNNNGTLN-FVICNYDPRGNVFGQHPY 163
           W N+  +GC   +         +++CNY P GN   +  Y
Sbjct: 167 WANTKEVGCGSIKYIQEKWHKHYLVCNYGPSGNFKNEELY 206

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d1cfea_	135	Pathogenesis-related protein 1 (PR1) {Tomato (Lyco	100.0
d1smba_	149	Golgi-associated PR-1 protein {Human (Homo sapiens	100.0
d1rc9a1	164	Cysteine-rich secretory protein (SteCRISP) {Chines	100.0
d1qnxa_	209	Insect allergen 5 (AG5) {Yellow jacket (Vespula vu	100.0

>d1cfea_ d.111.1.1 (A:) Pathogenesis-related protein 1 (PR1) {Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Pathogenesis-related protein 1 (PR1)
species: Tomato (Lycopersicon esculentum), P14a [TaxId: 4081]

Probab=100.00  E-value=9.4e-48  Score=259.84  Aligned_cols=135  Identities=50%  Similarity=0.938  Sum_probs=123.6

Q ss_pred             CCchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCccCCCCCCccceEEEccCCCCCHHHHHHHHHcCcC
Q 036505           22 HNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQVSKYSETIAWSNQGEITATEFVKMCMDGKP  101 (163)
Q Consensus        22 ~~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~~~~Geni~~~~~~~~~~~~~v~~W~~e~~  101 (163)
                      +++++++|+.||.+|+.++|+||+||++|++.||.||++++..|.+.|+   .+||||+... ...++.++|+.||+|..
T Consensus         1 ~~~~q~~l~~HN~~R~~~~~~~L~Wd~~La~~Aq~~A~~~~~~~~~~~~---~~GeNi~~~~-~~~~~~~av~~W~~E~~   76 (135)
T d1cfea_           1 QNSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHS---GAGENLAKGG-GDFTGRAAVQLWVSERP   76 (135)
T ss_dssp             CCSHHHHHHHHHHHHHHTTCCCCEECSHHHHHHHHHHHHHTTTCCSCSC---SSSBCCEECS-SSCCHHHHHHHHHTTGG
T ss_pred             CCcHHHHHHHHHHHHHHcCCCcCEECHHHHHHHHHHHHHHhhCCCcccC---ccccceeccC-CCCCHHHHHHHHHhhcc
Confidence            4678999999999999999999999999999999999988888877665   5799998865 45789999999999999


Q ss_pred             CCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEecCCCCCCCCCCC
Q 036505          102 LYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY  163 (163)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~g~~~Y  163 (163)
                      +|+|..+.+.. +..++|||||||++|++||||++.|+++++  ++||+|+|+||+.|++||
T Consensus        77 ~y~~~~~~~~~-~~~~ghftQmvW~~t~~vGCa~~~c~~~~~--~vVC~Y~P~GN~~g~~pY  135 (135)
T d1cfea_          77 SYNYATNQCVG-GKKCRHYTQVVWRNSVRLGCGRARCNNGWW--FISCNYDPVGNWIGQRPY  135 (135)
T ss_dssp             GEEGGGTEECS-SSCCSSHHHHHCTTCCEEEEEEEECTTSSE--EEEEECSSCCSCTTSCCC
T ss_pred             ccccccccCCC-CcccchhheeeehhheEeeEEEEEECCCCE--EEEEEEeCCCCcCCcCCC
Confidence            99999887766 668999999999999999999999999877  899999999999999999

>d1smba_ d.111.1.1 (A:) Golgi-associated PR-1 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Golgi-associated PR-1 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-45  Score=249.92  Aligned_cols=138  Identities=24%  Similarity=0.431  Sum_probs=125.0

Q ss_pred             CCCCchHHHHHHHHHHHhhCCCCCcccCHHHHHHHHHHHHhhcCCCCccCCCC---CCccceEEEccCCCCCHHHHHHHH
Q 036505           20 SAHNKPEDYLKAHNEARASVGVGPMSWVYKLADYSHKHAQKLKGNCNLKKPQV---SKYSETIAWSNQGEITATEFVKMC   96 (163)
Q Consensus        20 ~~~~~~~~iL~~hN~~R~~~~m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~---~~~Geni~~~~~~~~~~~~~v~~W   96 (163)
                      ++++++++||+.||.+|+.++++||+||++|++.||.||++|+++|.+.|++.   ..+|||++... ....+.++|+.|
T Consensus         2 ~~~~f~~~il~~HN~~R~~~g~~pL~wd~~La~~A~~~A~~~a~~~~~~h~~~~~~~~~geni~~~~-~~~~~~~~v~~W   80 (149)
T d1smba_           2 ASKQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWAS-YDQTGKEVADRW   80 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHHHHCCCCCCHHHHTTSSEEEEEEES-SCCCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHcCCCcchhhHHHHHHHHHHHHhhcccccccccccccccccCceeeecC-CCccHHHHHHHH
Confidence            34567999999999999999999999999999999999999999999999753   36899999776 345788999999


Q ss_pred             HcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEecCCCCCCCCCCC
Q 036505           97 MDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQHPY  163 (163)
Q Consensus        97 ~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~g~~~Y  163 (163)
                      ++|..+|+|..+.+..   .++|||||||+++++||||++.|+++.+  ++||+|+|+||+.|+.||
T Consensus        81 ~~e~~~y~~~~~~~~~---~~ghftqmvw~~t~~vGCg~a~c~~~~~--~~VC~Y~p~GN~~~~~~y  142 (149)
T d1smba_          81 YSEIKNYNFQQPGFTS---GTGHFTAMVWKNTKKMGVGKASASDGSS--FVVARYFPAGNVVNEGFF  142 (149)
T ss_dssp             HGGGGGCCTTSCCCCG---GGHHHHHHHCTTCCEEEEEEEECTTSCE--EEEEEEESCCCCCSTTHH
T ss_pred             HHHHhhcccCCCCccc---ccchhhheecCCceEeeEEEEEcCCCCE--EEEEEeeCCCCcCCcccc
Confidence            9999999999888765   7999999999999999999999998777  899999999999999887

>d1rc9a1 d.111.1.1 (A:1-164) Cysteine-rich secretory protein (SteCRISP) {Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Cysteine-rich secretory protein (SteCRISP)
species: Chinese green tree viper (Trimeresurus stejnegeri) [TaxId: 39682]

Probab=100.00  E-value=2.2e-41  Score=235.45  Aligned_cols=137  Identities=28%  Similarity=0.469  Sum_probs=118.7

Q ss_pred             CCCchHHHHHHHHHHHhhCC-----CCCcccCHHHHHHHHHHHHhhcCCCCccCCCC-------CCccceEEEccCCCCC
Q 036505           21 AHNKPEDYLKAHNEARASVG-----VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQV-------SKYSETIAWSNQGEIT   88 (163)
Q Consensus        21 ~~~~~~~iL~~hN~~R~~~~-----m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~~-------~~~Geni~~~~~~~~~   88 (163)
                      ..++|++||+.||.+|++++     |++|+||.+|++.|+.||+    +|...|+..       ..+|||++... ....
T Consensus        11 ~~~~~~~il~~HN~~R~~~~~~a~~m~~L~Wd~~La~~A~~~a~----~c~~~~~~~~~~~~~~~~~g~n~~~~~-~~~~   85 (164)
T d1rc9a1          11 KPEIQNEIVDLHNSLRRSVNPTASNMLRMEWYPEAADNAERWAY----RCIESHSSYESRVIEGIKCGENIYMSP-YPMK   85 (164)
T ss_dssp             SHHHHHHHHHHHHHHHHTCSSCBSSCBCCEECHHHHHHHHHHHT----TTCCSCCCGGGGEETTEECEEEEEEES-SCCC
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCcccccccccCHHHHHHHHHHHH----HHhhccCCcccccccccccceEEEEec-CCCC
Confidence            34688999999999999998     6679999999999999999    898877542       26789998765 3467


Q ss_pred             HHHHHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCCeeEEEEEEecCCCCCCCC--CCC
Q 036505           89 ATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNGTLNFVICNYDPRGNVFGQ--HPY  163 (163)
Q Consensus        89 ~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~~~~~~vC~Y~p~gN~~g~--~~Y  163 (163)
                      +.++|+.||+|..+|+|..+.+.. +..++|||||||+++++||||++.|.++....++||+|+|+||+.|+  .||
T Consensus        86 ~~~~v~~W~~E~~~~~~~~~~~~~-~~~~ghftqmvW~~t~~vGCa~~~c~~~~~~~~vVC~Y~P~GN~~g~~~~~Y  161 (164)
T d1rc9a1          86 WTDIIHAWHDEYKDFKYGVGADPP-NAVTGHYTQIVWYKSYRIGCAAAYCPSSPYSYFFVCQYCPAGNFIGKTATPY  161 (164)
T ss_dssp             HHHHHHHHHGGGGGEETTTEESST-TCCCHHHHHHTCTTCCEEEEEEEECTTSSSSEEEEEEEESCCCCTTCTTCSS
T ss_pred             HHHHHHHHhhhhheeecCCCCCCC-cchhhHHHHHhhhcccEEeEEEEEeCCCCceEEEEEEEcCCCccCCCcCCCc
Confidence            899999999999999999877666 66799999999999999999999998875455899999999999997  567

>d1qnxa_ d.111.1.1 (A:) Insect allergen 5 (AG5) {Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]}

class: Alpha and beta proteins (a+b)
fold: PR-1-like
superfamily: PR-1-like
family: PR-1-like
domain: Insect allergen 5 (AG5)
species: Yellow jacket (Vespula vulgaris), Ves v 5 [TaxId: 7454]

Probab=100.00  E-value=6.6e-40  Score=236.06  Aligned_cols=138  Identities=24%  Similarity=0.432  Sum_probs=116.8

Q ss_pred             CCchHHHHHHHHHHHhhCC-----------------CCCcccCHHHHHHHHHHHHhhcCCCCccCCC-----CCCccceE
Q 036505           22 HNKPEDYLKAHNEARASVG-----------------VGPMSWVYKLADYSHKHAQKLKGNCNLKKPQ-----VSKYSETI   79 (163)
Q Consensus        22 ~~~~~~iL~~hN~~R~~~~-----------------m~~L~Wd~~La~~A~~~a~~~~~~C~~~~~~-----~~~~Geni   79 (163)
                      +++|+.||+.||.+|++++                 |.+|+||++||..||.||+    +|...|+.     ...+|||+
T Consensus        43 ~~~r~~iL~~HN~~R~~vA~G~~~~~~~~~~P~A~~M~~L~Wd~eLa~~A~~~a~----~C~~~~~~~~~~~~~~~Gen~  118 (209)
T d1qnxa_          43 KQEKQDILKEHNDFRQKIARGLETRGNPGPQPPAKNMKNLVWNDELAYVAQVWAN----QCQYGHDTCRDVAKYQVGQNV  118 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCSTTCCCCCBSSCCCCEECHHHHHHHHHHHT----TCCCSCCSCCCCSSSCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccccCCCCccccCccceECHHHHHHHHHHHh----hcccCCCcccCCCCCCCccee
Confidence            3579999999999999863                 7789999999999999999    89888753     22579999


Q ss_pred             EEccCC---CCCHHHHHHHHHcCcCCCCCCCCcccCCCCccchHHHHHHHhcCeeeEEEEEeCCCC-eeEEEEEEecCCC
Q 036505           80 AWSNQG---EITATEFVKMCMDGKPLYDYNSNTCALNGTKCAIYTQVVWRNSVRLGCAKERCNNNG-TLNFVICNYDPRG  155 (163)
Q Consensus        80 ~~~~~~---~~~~~~~v~~W~~e~~~~~~~~~~~~~~~~~~~~ftq~vw~~~~~vGCa~~~c~~~~-~~~~~vC~Y~p~g  155 (163)
                      +.....   ...+.++|+.|++|..+|++........+..++|||||||+++++||||++.|..+. ...++||+|+|+|
T Consensus       119 ~~~~~~~~~~~~~~~~v~~W~~E~~~~~~~~~~~~~~~~~~ghftQmvw~~t~~VGCa~~~c~~~~~~~~~vVC~Y~p~G  198 (209)
T d1qnxa_         119 ALTGSTAAKYDDPVKLVKMWEDEVKDYNPKKKFSGNDFLKTGHYTQMVWANTKEVGCGSIKYIQEKWHKHYLVCNYGPSG  198 (209)
T ss_dssp             EEEEESSSCCCCHHHHHHHHHGGGGGCCTTSCGGGSCHHHHHHHHHHTCTTCCEEEEEEEEEEETTEEEEEEEEEEESCC
T ss_pred             eecccCCcCcccHHHHHHHHHHHhhhcCCCcccccCCccccchhHHHhhhhhCEEeEEEEEEcCCCCCEEEEEEEECCCC
Confidence            865422   357899999999999999998876554345699999999999999999999997653 3458999999999


Q ss_pred             CCCCCCCC
Q 036505          156 NVFGQHPY  163 (163)
Q Consensus       156 N~~g~~~Y  163 (163)
                      |+.|++||
T Consensus       199 N~~g~~~Y  206 (209)
T d1qnxa_         199 NFKNEELY  206 (209)
T ss_dssp             CCTTSCSS
T ss_pred             CCCCCCCC
Confidence            99999999