Citrus Sinensis ID: 036525

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780---
LDLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFVDGQLQSSAFEIINVNNGARGVGFWTPEKGLTQKLKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDASTVVSSRSLGLNSFWGLFLIAGIAAILALIIFLAVFVHQHRNVLRNSESSLLDLSAHTFKDKCGIQVHGMGATEASPDSRYPASPSSYSQHADSHFLFYEEQGTPRTEYGNSNHNPKSQAQAPRGIVSAVELTSAGQEMARSPHVVRENN
ccccccccEEEEEcccccHHHHHHHHHcccccccEEEEEcccccccccccccEEEEEccHHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHccccccccEEEEcccccccccccccHHHcccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHccccccccccEEEEccccccccEEEEEEccccEEEEEEccccccccccccEEEcccccccccEEEEEEcccccccccEEEEEEEHHHHHHHcccccccccccccHHHHHHHHHccccccEEccEEEEccccEEEEccccccccccccEEEEEccccHHHHHHHHHHHHHHHHEEEEcccccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHcccccccccccEEEccEEEcccccccccccccHHHHHHHHccccccccEEEEEEccHHHHHHHHccccccEEEcccccccccEEEccccccccccHHHHHHHcccccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccc
ccHHccccEEEEEcccccHHHHHHHHHHHcccccEEEEcccccccccccccEEEEEcccHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHccccccEEEEEEccccHHccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHccEccccEEEEEccccEccccEEEEEEccccEEEEEEccccccccccccEEEEEEEEccccEEEEEccccccccccEEEEHHHHHHHHHHHccccccccccccHHHHHHHHHHccccEEEEEEEEEEEcEEEEEcccccccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHcccccccEEEEEEHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEccccHHHcccccccEEEcccHHHHHHHHccccccccEEEEEEccHHHHHHHHccccccEEEcccccccccEEEcccccccHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccEEEEEcc
LDLLNNAQVRvmlgpedsmptnfiiqpgnksqvpilsfsatspsltsirspyffrgalndssqVGAITAIIKAFgwreavpiyvdnqygeamiPSLTDALHAidtrvpyrsvisplatdDQIEKELYKLFTMQTRVFIVhklpslgsrIFEKANEIGLMNKGCVWIMTDGMTNLlrtlepsvidsmqgvidvrpyenpslfdaELNIIGLLAYDATRALAEAVEKAGitsfgfdkinvssnatdleafgisqngPKLLQALSSTrfkgltgdyifvdgqlqsSAFEIINvnngargvgfwtpekgltqklklrigvpvkkgfsdfvnvtidpktqeqtsvtGYCIDVFKavipelpyapdgsssgsyndlIYQVFLGefdavvgditivfnrsnyvgftlpytesgkrnAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHrinddfrgpakhqvgtsfwFSFSTMVFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVqqlqptitdgsFVLGILKQlgfderklvvynspedCHELFQkgsanggiaaaldeipYMKLLIgqhcskytmiepkfktagfgfvfplhsplvhdVSKAILNVTEGDKMKEIEDAWfkkhsscpdastvvssrslglnsFWGLFLIAGIAAILALIIFLAVFVHQHRNVLRNSESSLLdlsahtfkdkcgiqvhgmgateaspdsrypaspssysqhadSHFLfyeeqgtprteygnsnhnpksqaqaprGIVSAVELTsagqemarsphvvrenn
LDLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFVDGQLQSSAFEIINVNNGARGVGFWTPEKGLTQKLKLRIGVPVKKGFSDFVNvtidpktqeqtsvTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDASTVVSSRSLGLNSFWGLFLIAGIAAILALIIFLAVFVHQHRNVLRNSESSLLDLSAHTFKDKCGIQVHGMGATEASPDSRYPASPSSYSQHADSHFLFYEEQGTPRTEYGNSNHNPKSQAQAPRGIVSAVELTSagqemarsphvvrenn
LDLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFVDGQLQSSAFEIINVNNGARGVGFWTPEKGLTQKLKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCffifigfvvwvfEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILTQSYtasltslltvqqlqptITDGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDASTVVSSRSLGLNSFWglfliagiaailaliiflaVFVHQHRNVLRNSESSLLDLSAHTFKDKCGIQVHGMGATEASPDSRYPASPSSYSQHADSHFLFYEEQGTPRTEYGNSNHNPKSQAQAPRGIVSAVELTSAGQEMARSPHVVRENN
**********************FII*********ILSF******LTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFVDGQLQSSAFEIINVNNGARGVGFWTPEKGLTQKLKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDASTVVSSRSLGLNSFWGLFLIAGIAAILALIIFLAVFVHQHRNVLRNSESSLLDLSAHTFKDKCGIQVH**********************************************************************************
LDLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVIS******Q*EKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEKAGIT***********************NGPKLLQALSSTRFKGLTGDYIFVDGQLQSSAFEIINVNNGARGVGFWTPEKGLTQKLKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTV***************ILKQLGFDERKLVVYN***************GGIAAALDEIPYMKLLIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWF*********************SFWGLFLIAGIAAILALIIFLAVFVHQHRNV***********************************************************************************************************
LDLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFVDGQLQSSAFEIINVNNGARGVGFWTPEKGLTQKLKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDASTVVSSRSLGLNSFWGLFLIAGIAAILALIIFLAVFVHQHRNVLRNSESSLLDLSAHTFKDKCGIQVHGM********************HADSHFLFYEEQGTPRT****************RGIVSAVELTS****************
LDLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEKAGITSFGFDKI*VSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFVDGQLQSSAFEIINVNNGARGVGFWTPEKGLTQKLKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPD******SRSLGLNSFWGLFLIAGIAAILALIIFLAVFVHQHRNVLR*SESSLLDLSAHTFKDKC**********************************************************APRGIVSAVELTSAGQEMARSPHVVREN*
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LDLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPYENPSLFDAELNIIGLLAYDATRALAEAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFVDGQLQSSAFEIINVNNGARGVGFWTPEKGLTQKLKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYAPDGSSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLPYTESGKRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITDGSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDASTVVSSRSLGLNSFWGLFLIAGIAAILALIIFLAVFVHQHRNVLRNSESSLLDLSAHTFKDKCGIQVHGMGATEASPDSRYPASPSSYSQHADSHFLFYEEQGTPRTEYGNSNHNPKSQAQAPRGIVSAVELTSAGQEMARSPHVVRENN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query783 2.2.26 [Sep-21-2011]
Q8LGN0952 Glutamate receptor 2.7 OS yes no 0.916 0.754 0.482 0.0
Q9C5V5947 Glutamate receptor 2.8 OS no no 0.925 0.765 0.482 0.0
O81078940 Glutamate receptor 2.9 OS no no 0.902 0.752 0.479 0.0
O04660901 Glutamate receptor 2.1 OS no no 0.860 0.748 0.475 0.0
Q9SHV1920 Glutamate receptor 2.2 OS no no 0.823 0.701 0.481 0.0
Q9SHV2895 Glutamate receptor 2.3 OS no no 0.859 0.751 0.467 0.0
O81776896 Glutamate receptor 2.4 OS no no 0.850 0.743 0.483 0.0
Q9LFN5918 Glutamate receptor 2.5 OS no no 0.860 0.734 0.448 0.0
Q9LFN8967 Glutamate receptor 2.6 OS no no 0.846 0.685 0.437 1e-174
Q9C8E7933 Glutamate receptor 3.3 OS no no 0.835 0.700 0.345 1e-122
>sp|Q8LGN0|GLR27_ARATH Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3 Back     alignment and function desciption
 Score =  741 bits (1913), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/827 (48%), Positives = 531/827 (64%), Gaps = 109/827 (13%)

Query: 1   LDLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALND 60
           LDL+ N QV  ++GP  SM   F+I+  +KSQVP ++FSAT P LTSI SPYF R  L+D
Sbjct: 96  LDLIKNEQVSAIIGPRTSMQAEFMIRLADKSQVPTITFSATCPLLTSINSPYFVRATLDD 155

Query: 61  SSQVGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDD 120
           SSQV AI AI+K+FGWR  V IYVDN++GE ++P LTDAL  +   V  R +I   A DD
Sbjct: 156 SSQVKAIAAIVKSFGWRNVVAIYVDNEFGEGILPLLTDALQDVQAFVVNRCLIPQEANDD 215

Query: 121 QIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEP 180
           QI KELYKL TMQTRVF+VH  P+LG R F+KA EIG+M +G VW++TDG+ NLL++ E 
Sbjct: 216 QILKELYKLMTMQTRVFVVHMPPTLGFRFFQKAREIGMMEEGYVWLLTDGVMNLLKSNER 275

Query: 181 -SVIDSMQGVIDVRPYENPS------------LF-----DAELNIIGLLAYDATRALAEA 222
            S +++MQGV+ VR +   S            +F     D E+NI  L AYD+  ALA A
Sbjct: 276 GSSLENMQGVLGVRSHIPKSKKLKNFRLRWEKMFPKKGNDEEMNIFALRAYDSITALAMA 335

Query: 223 VEKAGITSFGFDK-INVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFVDGQLQ 281
           VEK  I S  +D  I   +N T+L   G+S+ GP LL+ALS+ RF GL G++  ++GQL+
Sbjct: 336 VEKTNIKSLRYDHPIASGNNKTNLGTLGVSRYGPSLLKALSNVRFNGLAGEFELINGQLE 395

Query: 282 SSAFEIINV-NNGARGVGFWTPEKGL---------------------------------- 306
           SS F++IN+  +  R +G W P  G+                                  
Sbjct: 396 SSVFDVINIIGSEERIIGLWRPSNGIVNAKSKNTTSVLGERLGPVIWPGKSKDVPKGWQI 455

Query: 307 -TQKLKLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYA--PDG-- 361
            T    LR+G+PVKKGF +FV+  IDP +   T  TGYCI++F+AV+ +LPY+  P    
Sbjct: 456 PTNGKMLRVGIPVKKGFLEFVDAKIDPISNAMTP-TGYCIEIFEAVLKKLPYSVIPKYIA 514

Query: 362 --SSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLPYTESG---------KRNA 410
             S   +Y++++YQV+ G +DAVVGD+TIV NRS YV FTLPYTESG          +N 
Sbjct: 515 FLSPDENYDEMVYQVYTGAYDAVVGDVTIVANRSLYVDFTLPYTESGVSMMVPLKDNKNT 574

Query: 411 WVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQ 470
           WVFL+P + DLWVT+ CFF+FIGF+VW+ EHR+N DFRGP  HQ+GTSFWF+FSTM F+ 
Sbjct: 575 WVFLRPWSLDLWVTTACFFVFIGFIVWILEHRVNTDFRGPPHHQIGTSFWFAFSTMNFAH 634

Query: 471 RERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITD-------------- 516
           RE+V+SNLARFVV+VWCFVVL+L QSYTA+LTS  TV+ LQPT+T+              
Sbjct: 635 REKVVSNLARFVVLVWCFVVLVLIQSYTANLTSFFTVKLLQPTVTNWKDLIKFNKNIGYQ 694

Query: 517 -GSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQHCS 575
            G+FV  +LK  GFDE +L  + S  +C ELF    +NG I A+ DE+ Y+K+++ Q+ S
Sbjct: 695 RGTFVRELLKSQGFDESQLKPFGSAVECDELF----SNGTITASFDEVAYIKVILSQNSS 750

Query: 576 KYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDAST 635
           KYTM+EP FKTAGFGFVFP  SPL  DVS+AILNVT+G++M+ IE+ WFKK ++CPD +T
Sbjct: 751 KYTMVEPSFKTAGFGFVFPKKSPLTDDVSRAILNVTQGEEMQHIENKWFKKPNNCPDLNT 810

Query: 636 VVSSRSLGLNSFWGLFLIAGIAAILALIIFLAVFVHQHRNVL-RNSESSLL--------- 685
            +SS  L L+SFWGLFLIAGIA+ LAL+IF+A F+++H++ L  +SE+S           
Sbjct: 811 SLSSNHLSLSSFWGLFLIAGIASFLALLIFVANFLYEHKHTLFDDSENSFRGKLKFLVRN 870

Query: 686 ----DLSAHTFKDKCGIQV-----HGMGATEASPDSRYPASPSSYSQ 723
               D+ +H FK+     V      G  +      +  P SP  Y +
Sbjct: 871 FDEKDIKSHMFKENAVHNVSSPITQGSSSPLTDQSTPLPRSPEQYRE 917
Glutamate-gated receptor that probably acts as non-selective cation channel. May be involved in light-signal transduction and calcium homeostasis via the regulation of calcium influx into cells.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C5V5|GLR28_ARATH Glutamate receptor 2.8 OS=Arabidopsis thaliana GN=GLR2.8 PE=2 SV=2 Back     alignment and function description
>sp|O81078|GLR29_ARATH Glutamate receptor 2.9 OS=Arabidopsis thaliana GN=GLR2.9 PE=2 SV=1 Back     alignment and function description
>sp|O04660|GLR21_ARATH Glutamate receptor 2.1 OS=Arabidopsis thaliana GN=GLR2.1 PE=2 SV=2 Back     alignment and function description
>sp|Q9SHV1|GLR22_ARATH Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SHV2|GLR23_ARATH Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=GLR2.3 PE=2 SV=1 Back     alignment and function description
>sp|O81776|GLR24_ARATH Glutamate receptor 2.4 OS=Arabidopsis thaliana GN=GLR2.4 PE=2 SV=2 Back     alignment and function description
>sp|Q9LFN5|GLR25_ARATH Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=GLR2.5 PE=1 SV=2 Back     alignment and function description
>sp|Q9LFN8|GLR26_ARATH Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=GLR2.6 PE=2 SV=2 Back     alignment and function description
>sp|Q9C8E7|GLR33_ARATH Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query783
255548644 931 glutamate receptor 2 plant, putative [Ri 0.968 0.814 0.573 0.0
255548642 961 glutamate receptor 2 plant, putative [Ri 0.984 0.802 0.559 0.0
224142031867 glutamate-gated kainate-type ion channel 0.888 0.802 0.595 0.0
224142043 885 glutamate-gated kainate-type ion channel 0.899 0.795 0.584 0.0
224142035869 glutamate-gated kainate-type ion channel 0.890 0.802 0.591 0.0
255548632 971 glutamate receptor 2 plant, putative [Ri 0.971 0.783 0.556 0.0
224142049883 glutamate-gated kainate-type ion channel 0.899 0.797 0.577 0.0
224142027856 glutamate-gated kainate-type ion channel 0.851 0.779 0.611 0.0
224142057843 glutamate-gated kainate-type ion channel 0.854 0.793 0.607 0.0
224142037 901 glutamate-gated kainate-type ion channel 0.871 0.756 0.580 0.0
>gi|255548644|ref|XP_002515378.1| glutamate receptor 2 plant, putative [Ricinus communis] gi|223545322|gb|EEF46827.1| glutamate receptor 2 plant, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  960 bits (2481), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/868 (57%), Positives = 604/868 (69%), Gaps = 110/868 (12%)

Query: 5   NNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQV 64
            N +V+ ++GP  SM  +F+I+ G K+QVPI+SFSA++PSLTSIR PYFFR   NDS+QV
Sbjct: 70  KNMEVQAIIGPTTSMQADFVIELGQKAQVPIISFSASTPSLTSIRRPYFFRATQNDSTQV 129

Query: 65  GAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEK 124
           GAI A+I+AFGWREAVPIYVDN+YG+ +IP LTDAL AID R+PYRS+IS  ATDDQI +
Sbjct: 130 GAIAALIQAFGWREAVPIYVDNEYGQGVIPYLTDALQAIDARIPYRSLISFSATDDQIAE 189

Query: 125 ELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVID 184
           ELYKL +MQTRVFI+H LPSLGSR+  KA E+G+M++G VWIMT+GM++ LR+L PSVI+
Sbjct: 190 ELYKLMSMQTRVFILHMLPSLGSRLLTKAREVGMMSEGYVWIMTNGMSDYLRSLTPSVIE 249

Query: 185 SMQGVIDVRPY--------------------ENPSLFDAELNIIGLLAYDATRALAEAVE 224
           SMQGV+ VRPY                    +NP   D E +I  L AYDA  ALA A+E
Sbjct: 250 SMQGVLGVRPYVPKTKELEIFYVRWKSKFLQDNPGTVDVESSIYELWAYDAAIALAMAIE 309

Query: 225 KAGITSFGFDKINVSSNAT-DLEAFGISQNGPKLLQALSSTRFKGLTGDYIFVDGQLQSS 283
           KAG     F K N SSN+T DL  FG+S N P LLQALS+T FKGL GD++FV+GQL SS
Sbjct: 310 KAGAAKIDFQKANTSSNSTTDLTTFGVSLNDPDLLQALSNTGFKGLAGDFLFVNGQLPSS 369

Query: 284 AFEIINV-NNGARGVGFWTPEKGLTQKL-------------------------------- 310
           AF+IINV  +GARG+GFWTP+KGLT+KL                                
Sbjct: 370 AFQIINVIGDGARGLGFWTPQKGLTKKLNSVAVTNLYSTSESNLAPVIWPGDSSSVPKGW 429

Query: 311 -------KLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYA----- 358
                  KLRI VPVK+GF++FV VT DP T   T+V GYCIDVF AV+  LPYA     
Sbjct: 430 EIPTKGKKLRILVPVKEGFNEFVKVTRDPSTN-TTTVRGYCIDVFDAVVKALPYAVTYEY 488

Query: 359 -----PDGSSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLPYTESG------- 406
                PDGSS+G+Y+DL+YQV+ GEFDAVVGD TI+ NRS YV FT PYTESG       
Sbjct: 489 TPFVNPDGSSAGTYDDLVYQVYTGEFDAVVGDTTIIANRSLYVDFTFPYTESGVSMIVPI 548

Query: 407 ----KRNAWVFLQPLTWDLWVTSGCFFIFIGFVVWVFEHRINDDFRGPAKHQVGTSFWFS 462
                +NAWVF++PLTWDLWVTS CFF+FIGFVVWV EHRIN+DFRGP  HQ GT+FWFS
Sbjct: 549 KDNNSKNAWVFVKPLTWDLWVTSFCFFVFIGFVVWVLEHRINEDFRGPPSHQAGTAFWFS 608

Query: 463 FSTMVFSQRERVISNLARFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITD------ 516
           FSTMVF+ RERV+SNLAR VVI+WCFVVLILTQSYTASLTSLLTVQQL PT+TD      
Sbjct: 609 FSTMVFAHRERVVSNLARLVVIIWCFVVLILTQSYTASLTSLLTVQQLMPTVTDVHQLIS 668

Query: 517 ---------GSFVLGILKQLGFDERKLVVYNSPEDCHELFQKGSANGGIAAALDEIPYMK 567
                    GSFVLGILK LGF E K  VYNS E+C+ELF KG+ NGGIAAA DE+PY+K
Sbjct: 669 NEDNVGYLQGSFVLGILKGLGFHESKFKVYNSTEECNELFVKGTRNGGIAAAFDEVPYIK 728

Query: 568 LLIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKH 627
           L + Q+CSKYTM+EP FKT GFGFVFP  SPLV DVS+AIL+V +GD MK+I +AWF K 
Sbjct: 729 LFLAQYCSKYTMVEPTFKTGGFGFVFPKRSPLVPDVSRAILDVIQGDDMKKIGEAWFGKQ 788

Query: 628 SSCPDASTVVSSRSLGLNSFWGLFLIAGIAAILALIIFLAVFVHQHRNVLR--NSESSLL 685
           SSCPD ST VSS SL L SFWGLFLIAG A+ LAL+I+ A+F ++H  ++R  +SE+ + 
Sbjct: 789 SSCPDPSTTVSSNSLSLRSFWGLFLIAGTASALALMIYGAMFTYEHWQIIRRSDSEARIW 848

Query: 686 DLSAHTFK--DKCGIQVHGMGATEASPDSRYPASPSSYSQHADSHFLFYEEQGTPRTEYG 743
               H  +  D+  ++ H    +EA+  S    SPS YS   D    F  EQGTP  EYG
Sbjct: 849 SRIVHLLRIFDEKDLKSHTFRKSEANEISMGAPSPSIYSVQTD----FPGEQGTPSAEYG 904

Query: 744 NSNHNPKSQAQAPRGIVSAVELTSAGQE 771
               +P  + Q  + +V  +EL ++ Q+
Sbjct: 905 ----DPNPEEQPTQAVVLNIELVNSNQD 928

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255548642|ref|XP_002515377.1| glutamate receptor 2 plant, putative [Ricinus communis] gi|223545321|gb|EEF46826.1| glutamate receptor 2 plant, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224142031|ref|XP_002324363.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222865797|gb|EEF02928.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224142043|ref|XP_002324368.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222865802|gb|EEF02933.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224142035|ref|XP_002324364.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222865798|gb|EEF02929.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255548632|ref|XP_002515372.1| glutamate receptor 2 plant, putative [Ricinus communis] gi|223545316|gb|EEF46821.1| glutamate receptor 2 plant, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224142049|ref|XP_002324371.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222865805|gb|EEF02936.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224142027|ref|XP_002324361.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222865795|gb|EEF02926.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224142057|ref|XP_002324375.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222865809|gb|EEF02940.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224142037|ref|XP_002324365.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222865799|gb|EEF02930.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query783
TAIR|locus:2066148940 GLR2.9 "glutamate receptor 2.9 0.475 0.395 0.465 8.4e-167
TAIR|locus:2066086947 GLR2.8 "glutamate receptor 2.8 0.496 0.410 0.438 3.6e-164
TAIR|locus:2066107952 GLR2.7 "glutamate receptor 2.7 0.452 0.371 0.405 6.2e-150
TAIR|locus:2181196901 GLR2.1 "glutamate receptor 2.1 0.390 0.339 0.521 2.6e-143
TAIR|locus:2047256920 GLR2.2 "glutamate receptor 2.2 0.395 0.336 0.518 1.8e-142
TAIR|locus:2047251895 GLR2.3 "glutamate receptor 2.3 0.395 0.346 0.501 6.7e-134
TAIR|locus:2206095933 GLR3.3 "glutamate receptor 3.3 0.427 0.359 0.341 1.7e-88
TAIR|locus:2207165959 GLR3.4 "AT1G05200" [Arabidopsi 0.429 0.350 0.332 2.9e-82
TAIR|locus:2122128912 GLUR2 "glutamate receptor 2" [ 0.422 0.362 0.350 2.3e-81
TAIR|locus:2081805903 GLR3.6 "glutamate receptor 3.6 0.427 0.370 0.339 6.8e-79
TAIR|locus:2066148 GLR2.9 "glutamate receptor 2.9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 900 (321.9 bits), Expect = 8.4e-167, Sum P(3) = 8.4e-167
 Identities = 189/406 (46%), Positives = 250/406 (61%)

Query:   311 KLRIGVPVKKGFSDFVNVTIDPKTQEQTSVTGYCIDVFKAVIPELPYA--PDG---SSSG 365
             KLR+GVP+KKGF DFV VTI+P T ++T  TGY I++F+A + ELPY   P+     S  
Sbjct:   444 KLRVGVPMKKGFFDFVKVTINPITNKKTP-TGYAIEIFEAALKELPYLVIPEYVSFESPN 502

Query:   366 SYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLPYTESG-----------KRNAWVFL 414
             +YN+L+YQV+   +DAVVGDITI  NRS Y  FTLP+TESG            ++ WVFL
Sbjct:   503 NYNNLVYQVYDKTWDAVVGDITITANRSLYADFTLPFTESGVSMMVPVRDNENKDTWVFL 562

Query:   415 QPLTWDLWVTSGCXXXXXXXXXXXXEHRINDDFRGPAKHQVGTSFWFSFSTMVFSQRERV 474
             +P + +LWVT+GC            EHR+N DFRGP ++Q+GTS WFSFSTMVF+ RE V
Sbjct:   563 EPWSLELWVTTGCFFVFIGFVVWLFEHRVNTDFRGPPQYQIGTSLWFSFSTMVFAHRENV 622

Query:   475 ISNLARFVVIVWCFVVLILTQSYXXXXXXXXXXXXXXXXITD---------------GSF 519
             +SNLARFVV+VWCFVVL+LTQSY                +T+               G+F
Sbjct:   623 VSNLARFVVVVWCFVVLVLTQSYTASLTSFLTVQSLQPTVTNVNDLIKNRDCVGYQGGAF 682

Query:   520 VLGILKQLGFDERKLVVYNSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQHCSKYTM 579
             V  IL  LGF E +L  ++S +D  +L  KG + G IAAA DE+ Y+K ++ Q CSKY M
Sbjct:   683 VKDILLGLGFHEDQLKPFDSAKDADDLLSKGKSKG-IAAAFDEVAYLKAILSQSCSKYVM 741

Query:   580 IEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHSSCPDASTVVSS 639
             +EP FKT GFGF FP +SPL  + S+AILN+T+ +  ++IED WF K + CPD  T +SS
Sbjct:   742 VEPTFKTGGFGFAFPKNSPLTGEFSRAILNLTQNNVTQQIEDRWFPKKNDCPDPMTALSS 801

Query:   640 RSLGLNSFWXXXXXXXXXXXXXXXXXXXVFVHQHRNVLRN-SESSL 684
               L L+SF                    +F+++HR+ L + SE SL
Sbjct:   802 NRLNLSSFLGLFLIAGTAISFSLLVFVALFLYEHRHTLGDDSEDSL 847
GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA
GO:0005215 "transporter activity" evidence=IEA
GO:0005217 "intracellular ligand-gated ion channel activity" evidence=ISS
GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006810 "transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0006874 "cellular calcium ion homeostasis" evidence=NAS
GO:0009416 "response to light stimulus" evidence=NAS
GO:0005515 "protein binding" evidence=IPI
GO:0030003 "cellular cation homeostasis" evidence=RCA
TAIR|locus:2066086 GLR2.8 "glutamate receptor 2.8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066107 GLR2.7 "glutamate receptor 2.7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2181196 GLR2.1 "glutamate receptor 2.1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047256 GLR2.2 "glutamate receptor 2.2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2047251 GLR2.3 "glutamate receptor 2.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206095 GLR3.3 "glutamate receptor 3.3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2207165 GLR3.4 "AT1G05200" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122128 GLUR2 "glutamate receptor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081805 GLR3.6 "glutamate receptor 3.6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XVIII.2090.1
glutamate-gated kainate-type ion channel receptor subunit GluR5 (867 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query783
cd06366350 cd06366, PBP1_GABAb_receptor, Ligand-binding domai 1e-81
pfam00060268 pfam00060, Lig_chan, Ligand-gated ion channel 1e-74
pfam01094343 pfam01094, ANF_receptor, Receptor family ligand bi 1e-45
cd06350348 cd06350, PBP1_GPCR_family_C_like, Ligand-binding d 8e-40
cd06269298 cd06269, PBP1_glutamate_receptors_like, Family C G 3e-28
smart00079133 smart00079, PBPe, Eukaryotic homologues of bacteri 8e-23
cd04509299 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family 7e-14
COG0683366 COG0683, LivK, ABC-type branched-chain amino acid 1e-13
cd06268298 cd06268, PBP1_ABC_transporter_LIVBP_like, Periplas 2e-11
cd06345344 cd06345, PBP1_ABC_ligand_binding_like_10, Type I p 1e-09
cd06351328 cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leuci 3e-09
pfam13458343 pfam13458, Peripla_BP_6, Periplasmic binding prote 3e-08
cd06367362 cd06367, PBP1_iGluR_NMDA, N-terminal leucine/isole 7e-08
cd01391269 cd01391, Periplasmic_Binding_Protein_Type_1, Type 3e-07
cd06362452 cd06362, PBP1_mGluR, Ligand binding domain of the 1e-05
cd06380382 cd06380, PBP1_iGluR_AMPA, N-terminal leucine/isole 2e-05
cd06342334 cd06342, PBP1_ABC_LIVBP_like, Type I periplasmic l 3e-05
cd06346312 cd06346, PBP1_ABC_ligand_binding_like_11, Type I p 8e-05
cd06374472 cd06374, PBP1_mGluR_groupI, Ligand binding domain 3e-04
cd06364510 cd06364, PBP1_CaSR, Ligand-binding domain of the C 6e-04
cd06376463 cd06376, PBP1_mGluR_groupIII, Ligand-binding domai 9e-04
cd06363410 cd06363, PBP1_Taste_receptor, Ligand-binding domai 0.001
cd00134218 cd00134, PBPb, Bacterial periplasmic transport sys 0.002
cd06368324 cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leuc 0.002
cd06361403 cd06361, PBP1_GPC6A_like, Ligand-binding domain of 0.003
cd06333312 cd06333, PBP1_ABC-type_HAAT_like, Type I periplasm 0.004
>gnl|CDD|107361 cd06366, PBP1_GABAb_receptor, Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA) Back     alignment and domain information 
 Score =  264 bits (677), Expect = 1e-81
 Identities = 121/338 (35%), Positives = 162/338 (47%), Gaps = 74/338 (21%)

Query: 1   LDLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSL-TSIRSPYFFRGALN 59
           LDLL N  V  ++GP+ S    F+ +  N+  VP+LSF+ATSPSL + ++ PYFFR   +
Sbjct: 59  LDLLENKPVVAIIGPQCSSVAEFVAEVANEWNVPVLSFAATSPSLSSRLQYPYFFRTTPS 118

Query: 60  DSSQVGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATD 119
           DSSQ  AI A++K FGWR    IY D+ YG   +P L DAL      + YR+   P A D
Sbjct: 119 DSSQNPAIAALLKKFGWRRVATIYEDDDYGSGGLPDLVDALQEAGIEISYRAAFPPSAND 178

Query: 120 DQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLL---- 175
           D I   L KL    +RV +VH  P L  R+F +A ++G+M KG VWI+TD +++      
Sbjct: 179 DDITDALKKLKEKDSRVIVVHFSPDLARRVFCEAYKLGMMGKGYVWILTDWLSSNWWSSS 238

Query: 176 RTLEPSVIDSMQGVIDVRPY---------------------ENPSLFDAELNIIGLLAYD 214
              +  ++++MQGVI VR Y                     ENP L   E +I  L AYD
Sbjct: 239 DCTDEEMLEAMQGVIGVRSYVPNSSMTLQEFTSRWRKRFGNENPEL--TEPSIYALYAYD 296

Query: 215 ATRALAEAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYI 274
           A  A                                            ST F GL+G   
Sbjct: 297 AVWA--------------------------------------------STNFNGLSGPVQ 312

Query: 275 FV-DGQLQSSAFEIINV-NNGARGVGFWTPEKGLTQKL 310
           F    +L S AFEIIN+   G R +GFW+ E GL+  L
Sbjct: 313 FDGGRRLASPAFEIINIIGKGYRKIGFWSSESGLSVFL 350

Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example. Length = 350
>gnl|CDD|215685 pfam00060, Lig_chan, Ligand-gated ion channel Back     alignment and domain information
>gnl|CDD|216296 pfam01094, ANF_receptor, Receptor family ligand binding region Back     alignment and domain information
>gnl|CDD|153138 cd06350, PBP1_GPCR_family_C_like, Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs) Back     alignment and domain information
>gnl|CDD|153137 cd06269, PBP1_glutamate_receptors_like, Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors Back     alignment and domain information
>gnl|CDD|197504 smart00079, PBPe, Eukaryotic homologues of bacterial periplasmic substrate binding proteins Back     alignment and domain information
>gnl|CDD|107261 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems Back     alignment and domain information
>gnl|CDD|223755 COG0683, LivK, ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|107263 cd06268, PBP1_ABC_transporter_LIVBP_like, Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily Back     alignment and domain information
>gnl|CDD|107340 cd06345, PBP1_ABC_ligand_binding_like_10, Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>gnl|CDD|107346 cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs) Back     alignment and domain information
>gnl|CDD|222144 pfam13458, Peripla_BP_6, Periplasmic binding protein Back     alignment and domain information
>gnl|CDD|107362 cd06367, PBP1_iGluR_NMDA, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors Back     alignment and domain information
>gnl|CDD|107248 cd01391, Periplasmic_Binding_Protein_Type_1, Type 1 periplasmic binding fold superfamily Back     alignment and domain information
>gnl|CDD|107357 cd06362, PBP1_mGluR, Ligand binding domain of the metabotropic glutamate receptors (mGluR) Back     alignment and domain information
>gnl|CDD|107375 cd06380, PBP1_iGluR_AMPA, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor Back     alignment and domain information
>gnl|CDD|107337 cd06342, PBP1_ABC_LIVBP_like, Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine) Back     alignment and domain information
>gnl|CDD|107341 cd06346, PBP1_ABC_ligand_binding_like_11, Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>gnl|CDD|107369 cd06374, PBP1_mGluR_groupI, Ligand binding domain of the group I metabotropic glutamate receptor Back     alignment and domain information
>gnl|CDD|107359 cd06364, PBP1_CaSR, Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily Back     alignment and domain information
>gnl|CDD|107371 cd06376, PBP1_mGluR_groupIII, Ligand-binding domain of the group III metabotropic glutamate receptor Back     alignment and domain information
>gnl|CDD|107358 cd06363, PBP1_Taste_receptor, Ligand-binding domain of the T1R taste receptor Back     alignment and domain information
>gnl|CDD|238078 cd00134, PBPb, Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>gnl|CDD|107363 cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors Back     alignment and domain information
>gnl|CDD|107356 cd06361, PBP1_GPC6A_like, Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor Back     alignment and domain information
>gnl|CDD|107328 cd06333, PBP1_ABC-type_HAAT_like, Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 783
KOG1054897 consensus Glutamate-gated AMPA-type ion channel re 100.0
KOG1053 1258 consensus Glutamate-gated NMDA-type ion channel re 100.0
KOG4440993 consensus NMDA selective glutamate-gated ion chann 100.0
KOG1052656 consensus Glutamate-gated kainate-type ion channel 100.0
cd06361403 PBP1_GPC6A_like Ligand-binding domain of the promi 100.0
cd06390364 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucin 100.0
cd06367362 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/vali 100.0
cd06379377 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/ 100.0
cd06389370 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucin 100.0
cd06393384 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isol 100.0
cd06388371 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucin 100.0
cd06380382 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/vali 100.0
cd06362452 PBP1_mGluR Ligand binding domain of the metabotrop 100.0
cd06387372 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucin 100.0
cd06374472 PBP1_mGluR_groupI Ligand binding domain of the gro 100.0
cd06375458 PBP1_mGluR_groupII Ligand binding domain of the gr 100.0
cd06376463 PBP1_mGluR_groupIII Ligand-binding domain of the g 100.0
cd06365469 PBP1_Pheromone_receptor Ligand-binding domain of t 100.0
cd06392400 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/v 100.0
cd06386387 PBP1_NPR_C_like Ligand-binding domain of type C na 100.0
cd06364510 PBP1_CaSR Ligand-binding domain of the CaSR calciu 100.0
cd06391400 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/v 100.0
cd06363410 PBP1_Taste_receptor Ligand-binding domain of the T 100.0
cd06371382 PBP1_sensory_GC_DEF_like Ligand-binding domain of 100.0
cd06366350 PBP1_GABAb_receptor Ligand-binding domain of GABAb 100.0
cd06385405 PBP1_NPR_A Ligand-binding domain of type A natriur 99.98
cd06378362 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/ 99.98
cd06372391 PBP1_GC_G_like Ligand-binding domain of membrane g 99.98
cd06373396 PBP1_NPR_like Ligand binding domain of natriuretic 99.97
cd06384399 PBP1_NPR_B Ligand-binding domain of type B natriur 99.97
cd06352389 PBP1_NPR_GC_like Ligand-binding domain of membrane 99.97
cd06370404 PBP1_Speract_GC_like Ligand-binding domain of memb 99.97
PF01094348 ANF_receptor: Receptor family ligand binding regio 99.97
PRK15404369 leucine ABC transporter subunit substrate-binding 99.96
cd06382327 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/v 99.96
cd06342334 PBP1_ABC_LIVBP_like Type I periplasmic ligand-bind 99.96
cd06338345 PBP1_ABC_ligand_binding_like_5 Type I periplasmic 99.96
cd06345344 PBP1_ABC_ligand_binding_like_10 Type I periplasmic 99.96
KOG1056878 consensus Glutamate-gated metabotropic ion channel 99.95
cd06381363 PBP1_iGluR_delta_like N-terminal leucine/isoleucin 99.95
cd06346312 PBP1_ABC_ligand_binding_like_11 Type I periplasmic 99.95
cd06348344 PBP1_ABC_ligand_binding_like_13 Type I periplasmic 99.95
cd06368324 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleu 99.95
cd06340347 PBP1_ABC_ligand_binding_like_6 Type I periplasmic 99.94
cd06327334 PBP1_SBP_like_1 Periplasmic solute-binding domain 99.94
cd06394333 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleu 99.94
cd06355348 PBP1_FmdD_like Periplasmic component (FmdD) of an 99.94
cd06344332 PBP1_ABC_ligand_binding_like_9 Type I periplasmic 99.94
cd06329342 PBP1_SBP_like_3 Periplasmic solute-binding domain 99.94
cd06350348 PBP1_GPCR_family_C_like Ligand-binding domain of m 99.94
TIGR03669374 urea_ABC_arch urea ABC transporter, substrate-bind 99.94
cd06360336 PBP1_alkylbenzenes_like Type I periplasmic binding 99.94
COG0683366 LivK ABC-type branched-chain amino acid transport 99.94
cd06383368 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine 99.94
cd06336347 PBP1_ABC_ligand_binding_like_3 Type I periplasmic 99.93
cd06328333 PBP1_SBP_like_2 Periplasmic solute-binding domain 99.93
cd06331333 PBP1_AmiC_like Type I periplasmic components of am 99.93
cd06359333 PBP1_Nba_like Type I periplasmic binding component 99.93
cd06343362 PBP1_ABC_ligand_binding_like_8 Type I periplasmic 99.93
cd06349340 PBP1_ABC_ligand_binding_like_14 Type I periplasmic 99.93
cd06347334 PBP1_ABC_ligand_binding_like_12 Type I periplasmic 99.93
cd06357360 PBP1_AmiC Periplasmic binding domain of amidase (A 99.93
TIGR03407359 urea_ABC_UrtA urea ABC transporter, urea binding p 99.92
cd06377382 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/ 99.92
cd06330346 PBP1_Arsenic_SBP_like Periplasmic solute-binding d 99.92
cd06332333 PBP1_aromatic_compounds_like Type I periplasmic bi 99.92
cd06356334 PBP1_Amide_Urea_BP_like Periplasmic component (Fmd 99.92
cd06337357 PBP1_ABC_ligand_binding_like_4 Type I periplasmic 99.91
cd06358333 PBP1_NHase Type I periplasmic-binding protein of t 99.91
cd06335347 PBP1_ABC_ligand_binding_like_2 Type I periplasmic 99.91
PF13458343 Peripla_BP_6: Periplasmic binding protein; PDB: 4E 99.91
cd06334351 PBP1_ABC_ligand_binding_like_1 Type I periplasmic 99.91
cd06351328 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleuc 99.91
cd06339336 PBP1_YraM_LppC_lipoprotein_like Periplasmic bindin 99.89
TIGR03863347 PQQ_ABC_bind ABC transporter, substrate binding pr 99.89
cd06326336 PBP1_STKc_like Type I periplasmic binding domain o 99.87
cd06269298 PBP1_glutamate_receptors_like Family C G-protein c 99.87
PF13433363 Peripla_BP_5: Periplasmic binding protein domain; 99.86
cd06341341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic 99.83
KOG1055865 consensus GABA-B ion channel receptor subunit GABA 99.82
cd04509299 PBP1_ABC_transporter_GCPR_C_like Family C of G-pro 99.78
cd06333312 PBP1_ABC-type_HAAT_like Type I periplasmic binding 99.77
cd06268298 PBP1_ABC_transporter_LIVBP_like Periplasmic bindin 99.73
PRK10797302 glutamate and aspartate transporter subunit; Provi 99.72
cd06369380 PBP1_GC_C_enterotoxin_receptor Ligand-binding doma 99.72
PRK09495247 glnH glutamine ABC transporter periplasmic protein 99.72
PF00497225 SBP_bac_3: Bacterial extracellular solute-binding 99.67
PRK11260266 cystine transporter subunit; Provisional 99.64
TIGR02995275 ectoine_ehuB ectoine/hydroxyectoine ABC transporte 99.64
PRK15007243 putative ABC transporter arginine-biding protein; 99.63
PRK15010260 ABC transporter lysine/arginine/ornithine binding 99.61
PRK11917259 bifunctional adhesin/ABC transporter aspartate/glu 99.61
PF00060148 Lig_chan: Ligand-gated ion channel; InterPro: IPR0 99.6
TIGR01096250 3A0103s03R lysine-arginine-ornithine-binding perip 99.6
PRK09959 1197 hybrid sensory histidine kinase in two-component r 99.55
PRK15437259 histidine ABC transporter substrate-binding protei 99.55
PRK10859482 membrane-bound lytic transglycosylase F; Provision 99.54
COG0834275 HisJ ABC-type amino acid transport/signal transduc 99.45
PRK09959 1197 hybrid sensory histidine kinase in two-component r 99.41
TIGR02285268 conserved hypothetical protein. Members of this fa 99.4
TIGR03870246 ABC_MoxJ methanol oxidation system protein MoxJ. T 99.37
TIGR03871232 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associa 99.2
cd01391269 Periplasmic_Binding_Protein_Type_1 Type 1 periplas 99.19
smart00062219 PBPb Bacterial periplasmic substrate-binding prote 99.17
cd00134218 PBPb Bacterial periplasmic transport systems use m 99.15
smart00079134 PBPe Eukaryotic homologues of bacterial periplasmi 99.08
COG4623473 Predicted soluble lytic transglycosylase fused to 98.73
PF04348536 LppC: LppC putative lipoprotein; InterPro: IPR0074 98.5
PF1061365 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- 98.45
cd01537264 PBP1_Repressors_Sugar_Binding_like Ligand-binding 98.17
cd06267264 PBP1_LacI_sugar_binding_like Ligand binding domain 98.0
cd01536267 PBP1_ABC_sugar_binding_like Periplasmic sugar-bind 97.9
TIGR01098254 3A0109s03R phosphate/phosphite/phosphonate ABC tra 97.77
PRK00489287 hisG ATP phosphoribosyltransferase; Reviewed 97.7
cd06282266 PBP1_GntR_like_2 Ligand-binding domain of putative 97.6
cd06300272 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-bi 97.48
cd06320275 PBP1_allose_binding Periplasmic allose-binding dom 97.34
cd06273268 PBP1_GntR_like_1 This group includes the ligand-bi 97.33
cd01545270 PBP1_SalR Ligand-binding domain of DNA transcripti 97.31
cd06319277 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-b 97.29
cd06323268 PBP1_ribose_binding Periplasmic sugar-binding doma 97.27
cd06325281 PBP1_ABC_uncharacterized_transporter Type I peripl 97.24
cd06298268 PBP1_CcpA_like Ligand-binding domain of the catabo 96.94
cd06317275 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-bi 96.92
cd06271268 PBP1_AglR_RafR_like Ligand-binding domain of DNA t 96.9
cd06301272 PBP1_rhizopine_binding_like Periplasmic binding pr 96.89
PF13407257 Peripla_BP_4: Periplasmic binding protein domain; 96.84
cd06312271 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-bi 96.82
cd06289268 PBP1_MalI_like Ligand-binding domain of MalI, a tr 96.76
TIGR01481329 ccpA catabolite control protein A. Catabolite cont 96.76
COG3107604 LppC Putative lipoprotein [General function predic 96.75
cd06305273 PBP1_methylthioribose_binding_like Methylthioribos 96.74
TIGR03431288 PhnD phosphonate ABC transporter, periplasmic phos 96.54
cd06284267 PBP1_LacI_like_6 Ligand-binding domain of an uncha 96.53
cd01542259 PBP1_TreR_like Ligand-binding domain of DNA transc 96.51
cd06309273 PBP1_YtfQ_like Periplasmic binding domain of ABC-t 96.47
PRK10653295 D-ribose transporter subunit RbsB; Provisional 96.39
cd06295275 PBP1_CelR Ligand binding domain of a transcription 96.32
cd01575268 PBP1_GntR Ligand-binding domain of DNA transcripti 96.26
cd06310273 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-bi 96.2
cd06281269 PBP1_LacI_like_5 Ligand-binding domain of uncharac 96.19
cd06313272 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-bi 96.16
cd06294270 PBP1_ycjW_transcription_regulator_like Ligand-bind 96.15
cd06274264 PBP1_FruR Ligand binding domain of DNA transcripti 95.97
cd06288269 PBP1_sucrose_transcription_regulator Ligand-bindin 95.94
cd06278266 PBP1_LacI_like_2 Ligand-binding domain of uncharac 95.91
cd06270268 PBP1_GalS_like Ligand binding domain of DNA transc 95.88
PRK10014342 DNA-binding transcriptional repressor MalI; Provis 95.85
cd06293269 PBP1_LacI_like_11 Ligand-binding domain of unchara 95.85
cd06283267 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of 95.84
PRK10703341 DNA-binding transcriptional repressor PurR; Provis 95.79
cd06299265 PBP1_LacI_like_13 Ligand-binding domain of DNA-bin 95.74
cd06322267 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-b 95.67
cd06303280 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding prot 95.64
cd06311274 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-bi 95.6
cd06307275 PBP1_uncharacterized_sugar_binding Periplasmic sug 95.59
cd06275269 PBP1_PurR Ligand-binding domain of purine represso 95.56
cd06285265 PBP1_LacI_like_7 Ligand-binding domain of uncharac 95.52
PF00532279 Peripla_BP_1: Periplasmic binding proteins and sug 95.52
cd01539303 PBP1_GGBP Periplasmic glucose/galactose-binding pr 95.51
COG1609333 PurR Transcriptional regulators [Transcription] 95.5
cd01574264 PBP1_LacI Ligand-binding domain of DNA transcripti 95.49
cd06324305 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-b 95.48
PRK11303328 DNA-binding transcriptional regulator FruR; Provis 95.4
cd01540289 PBP1_arabinose_binding Periplasmic L-arabinose-bin 95.4
cd06292273 PBP1_LacI_like_10 Ligand-binding domain of unchara 95.37
cd06308270 PBP1_sensor_kinase_like Periplasmic binding domain 95.36
cd06296270 PBP1_CatR_like Ligand-binding domain of a LacI-lik 95.35
cd06272261 PBP1_hexuronate_repressor_like Ligand-binding doma 95.35
cd06318282 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-bi 95.27
cd06277268 PBP1_LacI_like_1 Ligand-binding domain of uncharac 95.23
cd06279283 PBP1_LacI_like_3 Ligand-binding domain of uncharac 95.23
cd06297269 PBP1_LacI_like_12 Ligand-binding domain of unchara 95.14
COG2984322 ABC-type uncharacterized transport system, peripla 95.08
PRK10936343 TMAO reductase system periplasmic protein TorT; Pr 95.06
cd06290265 PBP1_LacI_like_9 Ligand-binding domain of uncharac 95.05
cd06291265 PBP1_Qymf_like Ligand binding domain of the lacI-l 95.03
cd01544270 PBP1_GalR Ligand-binding domain of DNA transcripti 95.02
cd01543265 PBP1_XylR Ligand-binding domain of DNA transcripti 95.01
PRK10423327 transcriptional repressor RbsR; Provisional 94.96
cd06321271 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-b 94.94
cd06287269 PBP1_LacI_like_8 Ligand-binding domain of uncharac 94.85
PRK15408336 autoinducer 2-binding protein lsrB; Provisional 94.84
cd06306268 PBP1_TorT-like TorT-like proteins, a periplasmic b 94.71
PRK10727343 DNA-binding transcriptional regulator GalR; Provis 94.64
cd06354265 PBP1_BmpA_PnrA_like Periplasmic binding domain of 94.63
cd06286260 PBP1_CcpB_like Ligand-binding domain of a novel tr 94.48
cd06316294 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-bi 94.45
cd06314271 PBP1_tmGBP Periplasmic sugar-binding domain of The 94.42
TIGR02637302 RhaS rhamnose ABC transporter, rhamnose-binding pr 94.38
PF13377160 Peripla_BP_3: Periplasmic binding protein-like dom 94.3
cd01538288 PBP1_ABC_xylose_binding Periplasmic xylose-binding 94.29
PRK09701311 D-allose transporter subunit; Provisional 94.23
PRK09492315 treR trehalose repressor; Provisional 94.21
TIGR02417327 fruct_sucro_rep D-fructose-responsive transcriptio 94.16
PRK09526342 lacI lac repressor; Reviewed 94.08
cd01541273 PBP1_AraR Ligand-binding domain of DNA transcripti 94.01
PRK10401346 DNA-binding transcriptional regulator GalS; Provis 93.89
TIGR02990239 ectoine_eutA ectoine utilization protein EutA. Mem 93.83
TIGR02955295 TMAO_TorT TMAO reductase system periplasmic protei 93.58
COG1879322 RbsB ABC-type sugar transport system, periplasmic 93.57
cd06302298 PBP1_LsrB_Quorum_Sensing Periplasmic binding domai 93.55
PRK15395330 methyl-galactoside ABC transporter galactose-bindi 93.4
PRK14987331 gluconate operon transcriptional regulator; Provis 93.39
PRK09860383 putative alcohol dehydrogenase; Provisional 92.99
PRK11041309 DNA-binding transcriptional regulator CytR; Provis 92.98
cd06304260 PBP1_BmpA_like Periplasmic binding component of a 92.58
TIGR02405311 trehalos_R_Ecol trehalose operon repressor, proteo 92.51
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 92.36
COG1454377 EutG Alcohol dehydrogenase, class IV [Energy produ 92.33
cd06280263 PBP1_LacI_like_4 Ligand-binding domain of uncharac 92.18
PRK15454395 ethanol dehydrogenase EutG; Provisional 92.15
PRK10339327 DNA-binding transcriptional repressor EbgR; Provis 91.95
cd08192370 Fe-ADH7 Iron-containing alcohol dehydrogenases-lik 91.36
cd08190414 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) inv 91.07
PRK10624382 L-1,2-propanediol oxidoreductase; Provisional 91.05
cd08189374 Fe-ADH5 Iron-containing alcohol dehydrogenases-lik 90.99
cd08193376 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyze 90.73
cd08551370 Fe-ADH iron-containing alcohol dehydrogenases (Fe- 90.54
TIGR02634302 xylF D-xylose ABC transporter, substrate-binding p 90.36
TIGR02638379 lactal_redase lactaldehyde reductase. This clade o 90.01
cd08194375 Fe-ADH6 Iron-containing alcohol dehydrogenases-lik 89.97
PF03808172 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp 89.74
PF00465366 Fe-ADH: Iron-containing alcohol dehydrogenase ; In 89.22
PF04392294 ABC_sub_bind: ABC transporter substrate binding pr 88.59
cd08185380 Fe-ADH1 Iron-containing alcohol dehydrogenases-lik 88.43
cd08188377 Fe-ADH4 Iron-containing alcohol dehydrogenases-lik 88.12
cd08176377 LPO Lactadehyde:propanediol oxidoreductase (LPO) c 87.79
PRK10355330 xylF D-xylose transporter subunit XylF; Provisiona 87.66
cd08191386 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyz 87.65
cd08181357 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 87.64
KOG3857465 consensus Alcohol dehydrogenase, class IV [Energy 87.02
cd08182367 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) c 86.72
cd08170351 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes ox 86.08
cd07766332 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) 85.78
cd08186383 Fe-ADH8 Iron-containing alcohol dehydrogenase. Typ 85.03
cd08187382 BDH Butanol dehydrogenase catalyzes the conversion 84.95
cd06315280 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-bi 83.96
PF13407257 Peripla_BP_4: Periplasmic binding protein domain; 83.87
cd08171345 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol 83.02
cd06533171 Glyco_transf_WecG_TagA The glycosyltransferase Wec 82.49
PRK09423366 gldA glycerol dehydrogenase; Provisional 81.78
cd08183374 Fe-ADH2 Iron-containing alcohol dehydrogenases-lik 81.73
cd06276247 PBP1_FucR_like Ligand-binding domain of a transcri 80.11
>KOG1054 consensus Glutamate-gated AMPA-type ion channel receptor subunit GluR2 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=5e-77  Score=616.75  Aligned_cols=644  Identities=21%  Similarity=0.341  Sum_probs=526.1

Q ss_pred             CCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEeC
Q 036525            7 AQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVDN   86 (783)
Q Consensus         7 ~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d~   86 (783)
                      ++|.||+|-+.-.....+-.+|...++|+|+++.    -++..+++..++.|.   .-.++++++.|++|.+++++| |.
T Consensus        89 ~Gv~Aifg~yd~ks~~~ltsfc~aLh~~~vtpsf----p~~~~~~Fviq~RP~---l~~al~s~i~hy~W~~fv~ly-D~  160 (897)
T KOG1054|consen   89 RGVYAIFGFYDKKSVNTLTSFCGALHVSFVTPSF----PTDGDNQFVIQMRPA---LKGALLSLIDHYKWEKFVYLY-DT  160 (897)
T ss_pred             hhHhhheecccccchhhhhhhccceeeeeecccC----CcCCCceEEEEeCch---HHHHHHHHHHhcccceEEEEE-cc
Confidence            5899999999999999999999999999999875    123456788888885   467899999999999999999 77


Q ss_pred             CcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCccccceEEE
Q 036525           87 QYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGCVWI  166 (783)
Q Consensus        87 ~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~~~~~i  166 (783)
                      +-|...++.+.+.+.+.+..|.....-. -.+...|..+++.+...+.+.+++.|..+....++.|+-+.|-...+|+||
T Consensus       161 ~rg~s~Lqai~~~a~~~nw~VtA~~v~~-~~d~~~yr~~f~~l~~r~e~rv~iDce~~~~~~il~q~i~~~k~~~~YHYv  239 (897)
T KOG1054|consen  161 DRGLSILQAIMEAAAQNNWQVTAINVGN-INDVKEYRMLFEMLDRRQENRVLIDCESERRNRILLQVIELGKHVKGYHYV  239 (897)
T ss_pred             cchHHHHHHHHHHHHhcCceEEEEEcCC-cccHHHHHHHHHHHhccccceEEEEcccHHHHHHHHHHHHHhhhccceEEE
Confidence            7899999999999999999998766432 223345888999998888888999999998888888888888888999999


Q ss_pred             EeCCcccccccCChhhhhcccceeEeeeC--------------------CCCCCcccccchHHHHHHHHHHHHHHHHHHh
Q 036525          167 MTDGMTNLLRTLEPSVIDSMQGVIDVRPY--------------------ENPSLFDAELNIIGLLAYDATRALAEAVEKA  226 (783)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------------------~~~~~~~~~~~~~~~~aYDAv~~la~Al~~a  226 (783)
                      ..+.--...+.  ..+.....++-++...                    .|+.....++..-++.+|||+.++++|++.+
T Consensus       240 laNl~f~d~dl--~~f~~g~aNitgFqivn~~~~~~~k~~~~~~~l~~~~~~g~~~~~~k~tsAlthDailV~~eaf~~~  317 (897)
T KOG1054|consen  240 LANLGFTDIDL--ERFQHGGANITGFQIVNKNNPMVKKFIQRWKELDEREYPGASNDPIKYTSALTHDAILVMAEAFRSL  317 (897)
T ss_pred             EeeCCCchhhH--HHHhcCCcceeEEEEecCCChHHHHHHHHHhhhcccccCCCCCCCcchhhhhhhhHHHHHHHHHHHH
Confidence            98732221111  1122222333333322                    3444444667788999999999999999988


Q ss_pred             cccccCccccccCCCCcccc--cccCCCChHHHHHHHHcCccccceeeEEEe-cCccccceEEEEEec-CCcEEEEEECC
Q 036525          227 GITSFGFDKINVSSNATDLE--AFGISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN-NGARGVGFWTP  302 (783)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~l~~aL~~~~f~g~~G~i~fd-~G~~~~~~~~I~~~~-~~~~~vg~w~~  302 (783)
                      .....+..   +++...||.  +..+|..|.++-.+|+++.++|++|.++|| .|.+.+.+.+|+++. ++.+.+|.|..
T Consensus       318 ~~q~~~~~---rRG~~GD~~an~~~p~~qG~~I~ralk~v~~eGLTGniqFd~~G~R~Nyt~~i~elk~~~~rk~~~W~e  394 (897)
T KOG1054|consen  318 RRQRIDIS---RRGNAGDCLANPAVPWEQGIDIERALKQVQVEGLTGNIQFDKYGRRTNYTIDIVELKSNGSRKVGYWNE  394 (897)
T ss_pred             HHhhhchh---ccCCCccccCCCCCchhcchhHHHHHHheeecccccceeecccCccccceEEEEEeccCCcceeeeecc
Confidence            76643322   233345654  466799999999999999999999999999 999999999999999 99999999999


Q ss_pred             CCCCccc---------------ceEEEEecccCCccccEEEeeCC--CCCCCccEEEeeHHHHHHHhhhCCCC------C
Q 036525          303 EKGLTQK---------------LKLRIGVPVKKGFSDFVNVTIDP--KTQEQTSVTGYCIDVFKAVIPELPYA------P  359 (783)
Q Consensus       303 ~~~~~~~---------------~~L~V~v~~~~p~~~f~~~~~~~--~~~~~~~~~G~~idl~~~ia~~l~f~------~  359 (783)
                      ..+....               ++..|.+....||.   +++++.  ..++ .++.|||+||+.+||+..+++      .
T Consensus       395 ~~~fv~~~t~a~~~~d~~~~~n~tvvvttiL~spyv---m~kkn~~~~egn-~ryEGyCvdLa~~iAkhi~~~Y~l~iv~  470 (897)
T KOG1054|consen  395 GEGFVPGSTVAQSRNDQASKENRTVVVTTILESPYV---MLKKNHEQLEGN-ERYEGYCVDLAAEIAKHIGIKYKLFIVG  470 (897)
T ss_pred             cCceeeccccccccccccccccceEEEEEecCCchh---HHHhhHHHhcCC-cccceeHHHHHHHHHHhcCceEEEEEec
Confidence            8876532               66777776666764   444443  2455 889999999999999988876      2


Q ss_pred             CC-----CCCCC-hHHHHHHHHcCeecEEEeceeeecccceeeeccccccccc-----------ccccceeeccCChhHH
Q 036525          360 DG-----SSSGS-YNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLPYTESG-----------KRNAWVFLQPLTWDLW  422 (783)
Q Consensus       360 ~~-----~~~~~-~~gli~~l~~g~~Di~~~~~~~t~~R~~~vdFs~p~~~s~-----------~~~~~~~l~PF~~~vW  422 (783)
                      +|     ...+. |+||+|.|..|++|++++++|||.+|++.+|||.|++..|           +++.++|+.|+..++|
T Consensus       471 dgkyGardaD~k~WnGMvGeLv~grAdiavApLTIt~~REeviDFSKPfMslGISIMIKKPqKsk~gVFSFldPLa~eIW  550 (897)
T KOG1054|consen  471 DGKYGARDADTKIWNGMVGELVYGRADIAVAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIW  550 (897)
T ss_pred             CCcccccCCCcccccchhHHHhcCccceEEeeeeeehhhhhhhccccchhhcCeEEEEeCcccCCCCeeeecchhHHHHH
Confidence            33     44556 9999999999999999999999999999999999999999           5688999999999999


Q ss_pred             HHHHHHHHHHHHhhheeecccCCCCC------C-------CccCccchhHHHHHHHhhhcccc-cccccchhhhHHHHHH
Q 036525          423 VTSGCFFIFIGFVVWVFEHRINDDFR------G-------PAKHQVGTSFWFSFSTMVFSQRE-RVISNLARFVVIVWCF  488 (783)
Q Consensus       423 l~i~~~~~~~~~~~~~~~~~~~~~~~------~-------~~~~~~~~~~~~~~~~l~~~~~~-~~~s~~~R~l~~~w~l  488 (783)
                      +|++...+-++++++++.|.++.+++      +       ++.+++.+++||+++++++||.+ .|++.++|++..+|||
T Consensus       551 m~ivfaYiGVSvvlFLVSrFSPYEwh~Ee~~rg~~t~~~~~NeFgifNsLWFsLgAFMQQG~DI~PRslSGRIvggvWWF  630 (897)
T KOG1054|consen  551 MCIVFAYIGVSVVLFLVSRFSPYEWHTEEFERGRFTPSDPPNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWF  630 (897)
T ss_pred             HHHHHHHhcceEEEEEEeccCchheeccccccCCCCCCCCCccchhhHHHHHHHHHHHhcCCCCCccccccceeccchhh
Confidence            99999999999999999988765432      2       12357889999999999999976 6899999999999999


Q ss_pred             HHHHHHHHhhhhhhheeeccccCCcccC-----------------CchHHHHHHhcCCCcccceec--------------
Q 036525          489 VVLILTQSYTASLTSLLTVQQLQPTITD-----------------GSFVLGILKQLGFDERKLVVY--------------  537 (783)
Q Consensus       489 ~~lil~s~Yta~L~s~Lt~~~~~~~i~s-----------------gs~~~~~l~~~~~~~~~~~~~--------------  537 (783)
                      |+||++++|||||+++||++++.+||++                 ||+ .++++.     +++..|              
T Consensus       631 FTlIIiSSYTANLAAFLTvErMvsPIESaEDLAkQteIaYGt~~~GST-keFFr~-----Skiavy~kMW~yM~SaepsV  704 (897)
T KOG1054|consen  631 FTLIIISSYTANLAAFLTVERMVSPIESAEDLAKQTEIAYGTLDSGST-KEFFRR-----SKIAVYEKMWTYMKSAEPSV  704 (897)
T ss_pred             hhhhhhhhhhhHHHHHHhHHhhcCcchhHHHHhhcceeeeeecCCCch-HHHHhh-----hhHHHHHHHHHHHhcCCcce
Confidence            9999999999999999999999999999                 333 333332     222233              


Q ss_pred             --CChhHHHHHHhcCcccCceeEEecchhHHHHHHhhc-CCceEEecccccccceEEEecCCCCChHHHHHHHHhhhcCC
Q 036525          538 --NSPEDCHELFQKGSANGGIAAALDEIPYMKLLIGQH-CSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGD  614 (783)
Q Consensus       538 --~~~~~~~~~l~~g~~~~g~~a~~~~~~~~~~~~~~~-c~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G  614 (783)
                        .+..+.++.+++.   .|-+|++.+...-+|.-++. |+ -..||..+.+.+||++.||||.|+..+|.++++|.|.|
T Consensus       705 Fv~t~aeGv~rVRks---KGkyAfLLEsTmNey~eqRkPCD-TMKVGgNLds~GYGiATp~Gsslr~~vNLAvLkL~E~G  780 (897)
T KOG1054|consen  705 FVRTTAEGVARVRKS---KGKYAFLLESTMNEYIEQRKPCD-TMKVGGNLDSKGYGIATPKGSSLRNAVNLAVLKLNEQG  780 (897)
T ss_pred             eeehhhhHHHHHHhc---CCceEeehHhhhhhhhhccCCcc-ceecccccCCcceeecCCCCcccccchhhhhhhhcccc
Confidence              3444555555554   46799999988777766554 98 55689999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCCCCCCCCCCC--CcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 036525          615 KMKEIEDAWFKKHSSCPDAST--VVSSRSLGLNSFWGLFLIAGIAAILALIIFLAVFVHQHRNVLR  678 (783)
Q Consensus       615 ~~~~~~~kw~~~~~~c~~~~~--~~~~~~L~l~~l~g~F~il~~g~~ls~~vfl~E~~~~~~~~~r  678 (783)
                      +++++++|||.++++|.....  .++...|+|.+++|+||||..|++||.++.++|+||+.|...|
T Consensus       781 ~LdKLkNKWWYDkGeC~sg~~ds~~ktsaLsLSnVAGvFYIL~gGl~laMlvALiEF~yksr~Eak  846 (897)
T KOG1054|consen  781 LLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAK  846 (897)
T ss_pred             hHHHhhhhhcccccccCCCCCCCCcchhhcchhhccceeeeehhhHHHHHHHHHHHHHHHhhHHHH
Confidence            999999999999999987653  3344789999999999999999999999999999999988765

>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1052 consensus Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor Back     alignment and domain information
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor Back     alignment and domain information
>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors Back     alignment and domain information
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor Back     alignment and domain information
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor Back     alignment and domain information
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor Back     alignment and domain information
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor Back     alignment and domain information
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor Back     alignment and domain information
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR) Back     alignment and domain information
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor Back     alignment and domain information
>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor Back     alignment and domain information
>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor Back     alignment and domain information
>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor Back     alignment and domain information
>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily Back     alignment and domain information
>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family Back     alignment and domain information
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor Back     alignment and domain information
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily Back     alignment and domain information
>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family Back     alignment and domain information
>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor Back     alignment and domain information
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues Back     alignment and domain information
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA) Back     alignment and domain information
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor Back     alignment and domain information
>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family Back     alignment and domain information
>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G Back     alignment and domain information
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family Back     alignment and domain information
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor Back     alignment and domain information
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors Back     alignment and domain information
>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases Back     alignment and domain information
>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure [] Back     alignment and domain information
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional Back     alignment and domain information
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors Back     alignment and domain information
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine) Back     alignment and domain information
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>KOG1056 consensus Glutamate-gated metabotropic ion channel receptor subunit GRM2 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2 Back     alignment and domain information
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors Back     alignment and domain information
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family Back     alignment and domain information
>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor Back     alignment and domain information
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF) Back     alignment and domain information
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins Back     alignment and domain information
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs) Back     alignment and domain information
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type Back     alignment and domain information
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene Back     alignment and domain information
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism] Back     alignment and domain information
>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors Back     alignment and domain information
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria Back     alignment and domain information
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF) Back     alignment and domain information
>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway Back     alignment and domain information
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems Back     alignment and domain information
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family Back     alignment and domain information
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein Back     alignment and domain information
>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family Back     alignment and domain information
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins Back     alignment and domain information
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes Back     alignment and domain information
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF) Back     alignment and domain information
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides Back     alignment and domain information
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A Back     alignment and domain information
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs) Back     alignment and domain information
>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen Back     alignment and domain information
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system Back     alignment and domain information
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins Back     alignment and domain information
>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors Back     alignment and domain information
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A Back     alignment and domain information
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions Back     alignment and domain information
>KOG1055 consensus GABA-B ion channel receptor subunit GABABR1 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems Back     alignment and domain information
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids Back     alignment and domain information
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily Back     alignment and domain information
>PRK10797 glutamate and aspartate transporter subunit; Provisional Back     alignment and domain information
>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C Back     alignment and domain information
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed Back     alignment and domain information
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane Back     alignment and domain information
>PRK11260 cystine transporter subunit; Provisional Back     alignment and domain information
>TIGR02995 ectoine_ehuB ectoine/hydroxyectoine ABC transporter solute-binding protein Back     alignment and domain information
>PRK15007 putative ABC transporter arginine-biding protein; Provisional Back     alignment and domain information
>PRK15010 ABC transporter lysine/arginine/ornithine binding periplasmic protein; Provisional Back     alignment and domain information
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed Back     alignment and domain information
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory Back     alignment and domain information
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>PRK15437 histidine ABC transporter substrate-binding protein HisJ; Provisional Back     alignment and domain information
>PRK10859 membrane-bound lytic transglycosylase F; Provisional Back     alignment and domain information
>COG0834 HisJ ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [Amino acid transport and metabolism / Signal transduction mechanisms] Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>TIGR02285 conserved hypothetical protein Back     alignment and domain information
>TIGR03870 ABC_MoxJ methanol oxidation system protein MoxJ Back     alignment and domain information
>TIGR03871 ABC_peri_MoxJ_2 quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein Back     alignment and domain information
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily Back     alignment and domain information
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins Back     alignment and domain information
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown Back     alignment and domain information
>PF10613 Lig_chan-Glu_bd: Ligated ion channel L-glutamate- and glycine-binding site; InterPro: IPR019594 This entry, sometimes called the S1 domain, is the luminal domain just upstream of the first, M1, transmembrane region of transmembrane ion-channel proteins, and binds L-glutamate and glycine [, ] Back     alignment and domain information
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems Back     alignment and domain information
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily Back     alignment and domain information
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily Back     alignment and domain information
>TIGR01098 3A0109s03R phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein Back     alignment and domain information
>PRK00489 hisG ATP phosphoribosyltransferase; Reviewed Back     alignment and domain information
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily Back     alignment and domain information
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis Back     alignment and domain information
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs Back     alignment and domain information
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions Back     alignment and domain information
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation Back     alignment and domain information
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines Back     alignment and domain information
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A Back     alignment and domain information
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria Back     alignment and domain information
>TIGR01481 ccpA catabolite control protein A Back     alignment and domain information
>COG3107 LppC Putative lipoprotein [General function prediction only] Back     alignment and domain information
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily Back     alignment and domain information
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein Back     alignment and domain information
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria Back     alignment and domain information
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems Back     alignment and domain information
>PRK10653 D-ribose transporter subunit RbsB; Provisional Back     alignment and domain information
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors Back     alignment and domain information
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs Back     alignment and domain information
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism Back     alignment and domain information
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional Back     alignment and domain information
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR Back     alignment and domain information
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional Back     alignment and domain information
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia Back     alignment and domain information
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs Back     alignment and domain information
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems Back     alignment and domain information
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli Back     alignment and domain information
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators Back     alignment and domain information
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species Back     alignment and domain information
>COG1609 PurR Transcriptional regulators [Transcription] Back     alignment and domain information
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional Back     alignment and domain information
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily Back     alignment and domain information
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems Back     alignment and domain information
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation Back     alignment and domain information
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs Back     alignment and domain information
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only] Back     alignment and domain information
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional Back     alignment and domain information
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs Back     alignment and domain information
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism Back     alignment and domain information
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR) Back     alignment and domain information
>PRK10423 transcriptional repressor RbsR; Provisional Back     alignment and domain information
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>PRK15408 autoinducer 2-binding protein lsrB; Provisional Back     alignment and domain information
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria Back     alignment and domain information
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional Back     alignment and domain information
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea Back     alignment and domain information
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species Back     alignment and domain information
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs Back     alignment and domain information
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein Back     alignment and domain information
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A Back     alignment and domain information
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily Back     alignment and domain information
>PRK09701 D-allose transporter subunit; Provisional Back     alignment and domain information
>PRK09492 treR trehalose repressor; Provisional Back     alignment and domain information
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor Back     alignment and domain information
>PRK09526 lacI lac repressor; Reviewed Back     alignment and domain information
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators Back     alignment and domain information
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional Back     alignment and domain information
>TIGR02990 ectoine_eutA ectoine utilization protein EutA Back     alignment and domain information
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT Back     alignment and domain information
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs Back     alignment and domain information
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional Back     alignment and domain information
>PRK14987 gluconate operon transcriptional regulator; Provisional Back     alignment and domain information
>PRK09860 putative alcohol dehydrogenase; Provisional Back     alignment and domain information
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional Back     alignment and domain information
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria Back     alignment and domain information
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion] Back     alignment and domain information
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors Back     alignment and domain information
>PRK15454 ethanol dehydrogenase EutG; Provisional Back     alignment and domain information
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional Back     alignment and domain information
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway Back     alignment and domain information
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism Back     alignment and domain information
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional Back     alignment and domain information
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor Back     alignment and domain information
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like Back     alignment and domain information
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein Back     alignment and domain information
>TIGR02638 lactal_redase lactaldehyde reductase Back     alignment and domain information
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli Back     alignment and domain information
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1 Back     alignment and domain information
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems Back     alignment and domain information
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria Back     alignment and domain information
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional Back     alignment and domain information
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate Back     alignment and domain information
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD) Back     alignment and domain information
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion] Back     alignment and domain information
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) Back     alignment and domain information
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation Back     alignment and domain information
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH) Back     alignment and domain information
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase Back     alignment and domain information
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process Back     alignment and domain information
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems Back     alignment and domain information
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A Back     alignment and domain information
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like Back     alignment and domain information
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins Back     alignment and domain information
>PRK09423 gldA glycerol dehydrogenase; Provisional Back     alignment and domain information
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like Back     alignment and domain information
>cd06276 PBP1_FucR_like Ligand-binding domain of a transcription repressor, FucR, which functions as a molecular sensor of L-fucose availability Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query783
4f11_A433 Crystal Structure Of The Extracellular Domain Of Hu 3e-07
3kg2_A823 Ampa Subtype Ionotropic Glutamate Receptor In Compl 8e-06
4io2_A248 Crystal Structure Of The Avglur1 Ligand Binding Dom 4e-05
3oek_A286 Crystal Structure Of Glun2d Ligand-Binding Core In 1e-04
3mq4_A481 Metabotropic Glutamate Receptor Mglur7 Complexed Wi 3e-04
2e4z_A501 Crystal Structure Of The Ligand-Binding Region Of T 3e-04
>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human Gaba(B) Receptor Gbr2 Length = 433 Back     alignment and structure 
Iteration: 1

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 114/279 (40%), Gaps = 46/279 (16%)
Query: 36  LSFSATSPSLTSIRS-PYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVDNQYGEAMIP 94
           LSF+AT+P L   +  PYFFR   +D++   AI  ++K + W+    +  D Q    +  
Sbjct: 113 LSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRN 172
Query: 95  SLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKAN 154
            LT  L+  D  +   S     + D      + KL     R+ +     ++ +++F  A 
Sbjct: 173 DLTGVLYGEDIEI---SDTESFSNDPCT--SVKKLKGNDVRIILGQFDQNMAAKVFCCAY 227
Query: 155 EIGLMNKGCVWIM-----------TDGMTNLLRTLEPSVIDSMQGVI--DVRPY------ 195
           E  +      WI+                N  R L  +++ +M+G I  D  P       
Sbjct: 228 EENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIK 287
Query: 196 ----ENPSLFDAELN---------IIGLLAYDATRALAEAVEKAGITSFGFDKINVSSNA 242
               + P  ++ E N              AYD    +A+ +++A       + ++ SS  
Sbjct: 288 TISGKTPQQYEREYNNKRSGVGPSKFHGYAYDGIWVIAKTLQRA------METLHASSRH 341
Query: 243 TDLEAFGISQN--GPKLLQALSSTRFKGLTGDYIFVDGQ 279
             ++ F  + +  G  +L A++ T F G+TG  +F +G+
Sbjct: 342 QRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFRNGE 380
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With Competitive Antagonist Zk 200775 Length = 823 Back     alignment and structure
>pdb|4IO2|A Chain A, Crystal Structure Of The Avglur1 Ligand Binding Domain Complex With Glutamate At 1.37 Angstrom Resolution Length = 248 Back     alignment and structure
>pdb|3OEK|A Chain A, Crystal Structure Of Glun2d Ligand-Binding Core In Complex With L- Aspartate Length = 286 Back     alignment and structure
>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With Ly3414 Antagonist Length = 481 Back     alignment and structure
>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The Group Iii Metabotropic Glutamate Receptor Length = 501 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query783
3kg2_A823 Glutamate receptor 2; ION channel, membrane protei 1e-150
4f11_A433 Gamma-aminobutyric acid type B receptor subunit 2; 7e-61
3h6g_A395 Glutamate receptor, ionotropic kainate 2; membrane 4e-57
3om0_A393 Glutamate receptor, ionotropic kainate 5; membrane 5e-50
3qel_B364 Glutamate [NMDA] receptor subunit epsilon-2; ION c 2e-49
3hsy_A376 Glutamate receptor 2; ligand-gated ION channel, sy 5e-49
3o21_A389 Glutamate receptor 3; periplasmatic binding protei 2e-48
3saj_A384 Glutamate receptor 1; rossman fold, ION channel, m 4e-47
3qek_A384 NMDA glutamate receptor subunit; amino terminal do 9e-46
1jdp_A441 NPR-C, atrial natriuretic peptide clearance recept 2e-41
1dp4_A435 Atrial natriuretic peptide receptor A; periplasmic 1e-27
1yae_A312 Glutamate receptor, ionotropic kainate 2; kainate 2e-20
1usg_A346 Leucine-specific binding protein; leucine-binding 9e-18
3ipc_A356 ABC transporter, substrate binding protein (amino; 6e-17
3hut_A358 Putative branched-chain amino acid ABC transporter 6e-16
4eyg_A368 Twin-arginine translocation pathway signal; PSI-bi 5e-15
4evq_A375 Putative ABC transporter subunit, substrate-bindi 2e-14
3lop_A364 Substrate binding periplasmic protein; protein str 2e-14
3sm9_A479 Mglur3, metabotropic glutamate receptor 3; structu 1e-13
3sg0_A386 Extracellular ligand-binding receptor; structural 2e-13
3i45_A387 Twin-arginine translocation pathway signal protei; 2e-13
3td9_A366 Branched chain amino acid ABC transporter, peripl 2e-12
2e4u_A555 Metabotropic glutamate receptor 3; G-protein-coupl 1e-11
3h5l_A419 Putative branched-chain amino acid ABC transporter 1e-11
3snr_A362 Extracellular ligand-binding receptor; structural 4e-11
3ks9_A496 Mglur1, metabotropic glutamate receptor 1; glutama 6e-11
3n0w_A379 ABC branched chain amino acid family transporter, 1e-10
3mq4_A481 Mglur7, metabotropic glutamate receptor 7; glutama 5e-10
3eaf_A391 ABC transporter, substrate binding protein; PSI2, 9e-10
3i09_A375 Periplasmic branched-chain amino acid-binding Pro; 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
3lkb_A392 Probable branched-chain amino acid ABC transporter 2e-09
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 3e-09
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 2e-06
1mqi_A263 Glutamate receptor 2; GLUR2, ligand binding core, 6e-09
1mqi_A263 Glutamate receptor 2; GLUR2, ligand binding core, 2e-05
2v3u_A265 Glutamate receptor delta-2 subunit; postsynaptic m 1e-08
2v3u_A265 Glutamate receptor delta-2 subunit; postsynaptic m 2e-06
1pb7_A292 N-methyl-D-aspartate receptor subunit 1; ligand bi 2e-07
1pb7_A292 N-methyl-D-aspartate receptor subunit 1; ligand bi 5e-05
3n0x_A374 Possible substrate binding protein of ABC transpo 2e-06
2rc8_A294 Glutamate [NMDA] receptor subunit 3A; membrane pro 1e-05
2rc8_A294 Glutamate [NMDA] receptor subunit 3A; membrane pro 9e-05
2a5s_A284 N-methyl-D-aspartate receptor nmdar2A subunit, NMD 1e-05
2a5s_A284 N-methyl-D-aspartate receptor nmdar2A subunit, NMD 4e-04
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 2e-05
4f06_A371 Extracellular ligand-binding receptor; PSI-biology 2e-04
1pea_A385 Amidase operon; gene regulator, receptor, binding 2e-04
2h4a_A325 YRAM (HI1655); perplasmic binding protein, lipopro 8e-04
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Length = 823 Back     alignment and structure
 Score =  460 bits (1183), Expect = e-150
 Identities = 133/778 (17%), Positives = 266/778 (34%), Gaps = 107/778 (13%)

Query: 2   DLLNNAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDS 61
              +   V  + G  D    N I        V  ++ S  +        P+  +      
Sbjct: 55  SQFSR-GVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDG----THPFVIQMR---P 106

Query: 62  SQVGAITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSV--ISPLATD 119
              GA+ ++I+ + W +   +Y D+  G + + ++ D+      +V   +V  I+    D
Sbjct: 107 DLKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKD 165

Query: 120 DQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLE 179
           +        L   + R  I+       + I ++   IG   KG  +I+ +        L+
Sbjct: 166 ETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDLLK 225

Query: 180 PSVIDSMQGVIDVRPY--------------------ENPSLFDAELNIIGLLAYDATRAL 219
                    V   +                      E P    A +     L YDA + +
Sbjct: 226 IQ--FGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVM 283

Query: 220 AEAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGLTGDYIFV-DG 278
            EA            +   + +            G ++ +AL   + +GL+G+  F  +G
Sbjct: 284 TEAFRNLRKQRIEISRRGNAGD-CLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNG 342

Query: 279 QLQSSAFEIINVN-NGARGVGFWTPEKGLT------QKLKLRIGVPVKKGFSDFVNVTI- 330
           +  +    I+ +  NG R +G+W+    +         L+ +  V      S +V +   
Sbjct: 343 KRINYTINIMELKTNGPRKIGYWSEVDKMVLTEDDTSGLEQKTVVVTTILESPYVMMKAN 402

Query: 331 DPKTQEQTSVTGYCIDVFKAVIPELP------------YAPDGSSSGSYNDLIYQVFLGE 378
                      GYC+D+   +                 Y    + +  +N ++ ++  G+
Sbjct: 403 HAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGK 462

Query: 379 FDAVVGDITIVFNRSNYVGFTLPYTESG-----------KRNAWVFLQPLTWDLWVTSGC 427
            D  +  +TI   R   + F+ P+   G           K   + FL PL +++W+    
Sbjct: 463 ADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVF 522

Query: 428 FFIFIGFVVWVFEH--------------RINDDFRGPAKHQVGTSFWFSFSTMVFSQRER 473
            +I +  V+++                 R         +  +  S WFS    +    + 
Sbjct: 523 AYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADI 582

Query: 474 VISNLA-RFVVIVWCFVVLILTQSYTASLTSLLTVQQLQPTITD---------------- 516
              +L+ R V  VW F  LI+  SYTA+L + LTV+++   I                  
Sbjct: 583 SPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLD 642

Query: 517 -GSFVLGILKQLGFDERKLVVYNS-------PEDCHELFQKGSANGGIAAALDEIPYMKL 568
            GS      +       K+  Y              E   +   + G  A L E    + 
Sbjct: 643 SGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLESTMNEY 702

Query: 569 LIGQHCSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIEDAWFKKHS 628
           +  +       +     + G+G   P  S L   V+ A+L ++E   + ++++ W+    
Sbjct: 703 IEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKG 762

Query: 629 SCP--DASTVVSSRSLGLNSFWGLFLIAGIAAILALIIFLAVFVHQHRNVLRNSESSL 684
            C   D+ +   + +L L++  G+F I      LA+++ L  F ++ R   +  +  +
Sbjct: 763 ECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKRMKGLV 820
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* Length = 433 Back     alignment and structure
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* Length = 395 Back     alignment and structure
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A Length = 393 Back     alignment and structure
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A* Length = 364 Back     alignment and structure
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A Length = 376 Back     alignment and structure
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A Length = 389 Back     alignment and structure
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} Length = 384 Back     alignment and structure
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A* Length = 384 Back     alignment and structure
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Length = 441 Back     alignment and structure
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* Length = 435 Back     alignment and structure
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Length = 312 Back     alignment and structure
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A Length = 346 Back     alignment and structure
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A Length = 356 Back     alignment and structure
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} Length = 358 Back     alignment and structure
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A* Length = 368 Back     alignment and structure
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A Length = 375 Back     alignment and structure
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} Length = 364 Back     alignment and structure
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens} Length = 479 Back     alignment and structure
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A* Length = 386 Back     alignment and structure
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum} Length = 387 Back     alignment and structure
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima} Length = 366 Back     alignment and structure
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* Length = 555 Back     alignment and structure
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} Length = 419 Back     alignment and structure
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A* Length = 496 Back     alignment and structure
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans} Length = 379 Back     alignment and structure
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} PDB: 2e4z_A* Length = 481 Back     alignment and structure
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} Length = 391 Back     alignment and structure
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} Length = 375 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} Length = 392 Back     alignment and structure
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Length = 259 Back     alignment and structure
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Length = 259 Back     alignment and structure
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Length = 263 Back     alignment and structure
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Length = 263 Back     alignment and structure
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Length = 265 Back     alignment and structure
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Length = 265 Back     alignment and structure
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Length = 292 Back     alignment and structure
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Length = 292 Back     alignment and structure
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B Length = 374 Back     alignment and structure
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Length = 294 Back     alignment and structure
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Length = 294 Back     alignment and structure
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Length = 284 Back     alignment and structure
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Length = 284 Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Length = 259 Back     alignment and structure
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A* Length = 371 Back     alignment and structure
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A Length = 385 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query783
3kg2_A823 Glutamate receptor 2; ION channel, membrane protei 100.0
3hsy_A376 Glutamate receptor 2; ligand-gated ION channel, sy 100.0
3o21_A389 Glutamate receptor 3; periplasmatic binding protei 100.0
3h6g_A395 Glutamate receptor, ionotropic kainate 2; membrane 100.0
3om0_A393 Glutamate receptor, ionotropic kainate 5; membrane 100.0
4gpa_A389 Glutamate receptor 4; PBP fold, ligand-gated ION c 100.0
3qek_A384 NMDA glutamate receptor subunit; amino terminal do 100.0
4f11_A433 Gamma-aminobutyric acid type B receptor subunit 2; 100.0
3saj_A384 Glutamate receptor 1; rossman fold, ION channel, m 100.0
3qel_B364 Glutamate [NMDA] receptor subunit epsilon-2; ION c 100.0
1jdp_A441 NPR-C, atrial natriuretic peptide clearance recept 100.0
2e4u_A555 Metabotropic glutamate receptor 3; G-protein-coupl 100.0
3sm9_A479 Mglur3, metabotropic glutamate receptor 3; structu 100.0
1dp4_A435 Atrial natriuretic peptide receptor A; periplasmic 100.0
3ks9_A496 Mglur1, metabotropic glutamate receptor 1; glutama 100.0
3mq4_A481 Mglur7, metabotropic glutamate receptor 7; glutama 99.97
4f06_A371 Extracellular ligand-binding receptor; PSI-biology 99.97
3td9_A366 Branched chain amino acid ABC transporter, peripl 99.96
3i45_A387 Twin-arginine translocation pathway signal protei; 99.96
3i09_A375 Periplasmic branched-chain amino acid-binding Pro; 99.96
3n0w_A379 ABC branched chain amino acid family transporter, 99.96
3ipc_A356 ABC transporter, substrate binding protein (amino; 99.96
4evq_A375 Putative ABC transporter subunit, substrate-bindi 99.96
3hut_A358 Putative branched-chain amino acid ABC transporter 99.96
4eyg_A368 Twin-arginine translocation pathway signal; PSI-bi 99.96
3h5l_A419 Putative branched-chain amino acid ABC transporter 99.95
1usg_A346 Leucine-specific binding protein; leucine-binding 99.95
3lkb_A392 Probable branched-chain amino acid ABC transporter 99.95
4gnr_A353 ABC transporter substrate-binding protein-branche 99.95
3n0x_A374 Possible substrate binding protein of ABC transpo 99.94
3lop_A364 Substrate binding periplasmic protein; protein str 99.94
3eaf_A391 ABC transporter, substrate binding protein; PSI2, 99.94
3sg0_A386 Extracellular ligand-binding receptor; structural 99.94
3snr_A362 Extracellular ligand-binding receptor; structural 99.93
1pea_A385 Amidase operon; gene regulator, receptor, binding 99.93
2h4a_A325 YRAM (HI1655); perplasmic binding protein, lipopro 99.87
3ckm_A327 YRAM (HI1655), LPOA; periplasmic-binding protein, 99.87
1yae_A312 Glutamate receptor, ionotropic kainate 2; kainate 99.86
1pb7_A292 N-methyl-D-aspartate receptor subunit 1; ligand bi 99.83
3g3k_A259 Glutamate receptor, ionotropic kainate 2; membrane 99.82
2rc8_A294 Glutamate [NMDA] receptor subunit 3A; membrane pro 99.81
2v3u_A265 Glutamate receptor delta-2 subunit; postsynaptic m 99.8
4gvo_A243 LMO2349 protein; structural genomics, IDP05245, L- 99.8
4h5g_A243 Amino acid ABC superfamily ATP binding cassette tr 99.79
2a5s_A284 N-methyl-D-aspartate receptor nmdar2A subunit, NMD 99.78
3i6v_A232 Periplasmic His/Glu/Gln/Arg/opine family-binding; 99.76
1mqi_A263 Glutamate receptor 2; GLUR2, ligand binding core, 99.75
3kzg_A237 Arginine 3RD transport system periplasmic binding 99.73
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 99.72
3del_B242 Arginine binding protein; alpha and beta protein ( 99.71
3k4u_A245 Binding component of ABC transporter; structural g 99.71
3hv1_A268 Polar amino acid ABC uptake transporter substrate 99.69
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 99.68
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 99.68
3tql_A227 Arginine-binding protein; transport and binding pr 99.67
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 99.64
3mpk_A267 Virulence sensor protein BVGS; venus flytrap, sens 99.64
4eq9_A246 ABC transporter substrate-binding protein-amino A 99.64
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 99.63
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 99.63
2iee_A271 ORF2, probable ABC transporter extracellular-bindi 99.62
1lst_A239 Lysine, arginine, ornithine-binding protein; amino 99.61
2y7i_A229 STM4351; arginine-binding protein; HET: ARG; 1.90A 99.61
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 99.6
2q88_A257 EHUB, putative ABC transporter amino acid-binding 99.58
3qax_A268 Probable ABC transporter arginine-binding protein; 99.57
2yln_A283 Putative ABC transporter, periplasmic binding Pro 99.56
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 99.55
4i62_A269 Amino acid ABC transporter, periplasmic amino ACI 99.54
2vha_A287 Periplasmic binding transport protein; periplasmic 99.53
1xt8_A292 Putative amino-acid transporter periplasmic solut 99.51
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 99.51
2v25_A259 Major cell-binding factor; antigen, adhesin, aspar 99.21
2ozz_A231 Hypothetical protein YHFZ; alpha-beta structure, s 98.08
3p7i_A321 PHND, subunit of alkylphosphonate ABC transporter; 97.82
3n5l_A310 Binding protein component of ABC phosphonate TRAN; 97.76
2h0a_A276 TTHA0807, transcriptional regulator; repressor, st 97.58
2qu7_A288 Putative transcriptional regulator; structural gen 97.27
2h3h_A313 Sugar ABC transporter, periplasmic sugar-binding p 97.22
1dbq_A289 Purine repressor; transcription regulation, DNA-bi 97.16
3brq_A296 HTH-type transcriptional regulator ASCG; transcrip 97.14
2rjo_A332 Twin-arginine translocation pathway signal protei; 97.03
3bbl_A287 Regulatory protein of LACI family; protein structu 97.01
3rot_A297 ABC sugar transporter, periplasmic sugar binding; 97.01
3clk_A290 Transcription regulator; 11017J, PSI-II, NYSGXRC, 96.98
3c3k_A285 Alanine racemase; structural genomics, protein str 96.98
2hsg_A332 Glucose-resistance amylase regulator; CCPA, transc 96.97
3k4h_A292 Putative transcriptional regulator; structural gen 96.96
3d02_A303 Putative LACI-type transcriptional regulator; peri 96.94
3gbv_A304 Putative LACI-family transcriptional regulator; NY 96.94
2rgy_A290 Transcriptional regulator, LACI family; 11011J, NY 96.93
3g85_A289 Transcriptional regulator (LACI family); transcrip 96.93
3dbi_A338 Sugar-binding transcriptional regulator, LACI FAM; 96.92
3egc_A291 Putative ribose operon repressor; structural genom 96.92
2o20_A332 Catabolite control protein A; CCPA, transcriptiona 96.92
3brs_A289 Periplasmic binding protein/LACI transcriptional; 96.89
3d8u_A275 PURR transcriptional regulator; APC91343.1, vibrio 96.85
3gyb_A280 Transcriptional regulators (LACI-family transcript 96.85
2fvy_A309 D-galactose-binding periplasmic protein; periplasm 96.84
3gv0_A288 Transcriptional regulator, LACI family; transcript 96.82
3h75_A350 Periplasmic sugar-binding domain protein; protein 96.8
3g1w_A305 Sugar ABC transporter; sugar-binding protein, baci 96.78
2fn9_A290 Ribose ABC transporter, periplasmic ribose-bindin; 96.77
3hcw_A295 Maltose operon transcriptional repressor; RNA-bind 96.77
1qpz_A340 PURA, protein (purine nucleotide synthesis repress 96.77
3o74_A272 Fructose transport system repressor FRUR; dual tra 96.75
3l49_A291 ABC sugar (ribose) transporter, periplasmic substr 96.75
3cs3_A277 Sugar-binding transcriptional regulator, LACI FAM; 96.75
2iks_A293 DNA-binding transcriptional dual regulator; escher 96.72
2x7x_A325 Sensor protein; transferase, sensor histidine kina 96.72
1tjy_A316 Sugar transport protein; protein-ligand complex, s 96.71
2fep_A289 Catabolite control protein A; CCPA, transcriptiona 96.69
3k9c_A289 Transcriptional regulator, LACI family protein; PS 96.68
3ksm_A276 ABC-type sugar transport system, periplasmic COMP; 96.68
3ctp_A330 Periplasmic binding protein/LACI transcriptional; 96.63
3o1i_D304 Periplasmic protein TORT; ligand free, two compone 96.52
3qk7_A294 Transcriptional regulators; structural genomics, N 96.47
2vk2_A306 YTFQ, ABC transporter periplasmic-binding protein 96.45
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 96.38
3lft_A295 Uncharacterized protein; ABC, ATPase, cassette, L- 96.36
3jvd_A333 Transcriptional regulators; structural genomics, P 96.32
3l6u_A293 ABC-type sugar transport system periplasmic compo; 96.31
2ioy_A283 Periplasmic sugar-binding protein; ribose binding 96.26
3m9w_A313 D-xylose-binding periplasmic protein; xylose bindi 96.26
3kjx_A344 Transcriptional regulator, LACI family; LACL famil 96.25
3kke_A303 LACI family transcriptional regulator; structural 96.13
2qh8_A302 Uncharacterized protein; conserved domain protein, 96.07
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 96.07
3jy6_A276 Transcriptional regulator, LACI family; NYSGXRC, P 96.07
3e3m_A355 Transcriptional regulator, LACI family; structural 95.99
4fe7_A412 Xylose operon regulatory protein; HTH_ARAC, helix- 95.97
1byk_A255 Protein (trehalose operon repressor); LACI family, 95.93
1jx6_A342 LUXP protein; protein-ligand complex, signaling pr 95.89
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 95.84
3bil_A348 Probable LACI-family transcriptional regulator; st 95.82
8abp_A306 L-arabinose-binding protein; binding proteins; HET 95.74
2a9h_A155 Voltage-gated potassium channel; potassium channel 95.64
3h5o_A339 Transcriptional regulator GNTR; transcription regu 95.63
3tb6_A298 Arabinose metabolism transcriptional repressor; tr 95.58
2dri_A271 D-ribose-binding protein; sugar transport; HET: RI 95.55
3huu_A305 Transcription regulator like protein; PSI-II, NYSG 95.29
2fqx_A318 Membrane lipoprotein TMPC; ABC transport system, l 95.24
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 95.2
3e61_A277 Putative transcriptional repressor of ribose OPER; 95.14
3ixl_A240 Amdase, arylmalonate decarboxylase; enantioselecti 95.12
3hs3_A277 Ribose operon repressor; PSI-II, NYSGXRC, periplas 94.82
1gud_A288 ALBP, D-allose-binding periplasmic protein; peripl 94.67
3miz_A301 Putative transcriptional regulator protein, LACI f 94.64
1jye_A349 Lactose operon repressor; gene regulation, protein 94.5
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 93.86
3h5t_A366 Transcriptional regulator, LACI family; DNA-depend 93.64
2hqb_A296 Transcriptional activator of COMK gene; berkeley s 93.5
3ouf_A97 Potassium channel protein; ION channel, membrane, 93.09
3lkv_A302 Uncharacterized conserved domain protein; ATPase b 92.84
3uug_A330 Multiple sugar-binding periplasmic receptor CHVE; 92.62
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 92.5
2q67_A114 Potassium channel protein; inverted teepee, helix 92.48
3ox4_A383 Alcohol dehydrogenase 2; iron, NAD, oxidoreductase 91.18
1p7b_A333 Integral membrane channel and cytosolic domains; t 91.03
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 90.92
3bfj_A387 1,3-propanediol oxidoreductase; opportunistic path 90.86
3qi7_A371 Putative transcriptional regulator; periplasmic bi 90.6
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 90.16
1xl4_A301 Inward rectifier potassium channel; integral membr 89.75
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 88.79
2dgd_A223 223AA long hypothetical arylmalonate decarboxylas; 88.62
3s99_A356 Basic membrane lipoprotein; ssgcid, structural gen 88.04
1lnq_A336 MTHK channels, potassium channel related protein; 87.97
1rrm_A386 Lactaldehyde reductase; structural genomics, dehyd 87.69
2xed_A273 Putative maleate isomerase; nicotinic acid catabol 86.19
1vlj_A407 NADH-dependent butanol dehydrogenase; TM0820, stru 85.72
2x26_A308 Periplasmic aliphatic sulphonates-binding protein; 85.47
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 85.3
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 85.11
3un6_A341 Hypothetical protein saouhsc_00137; structural gen 84.19
1o2d_A371 Alcohol dehydrogenase, iron-containing; TM0920, st 83.97
3uhj_A387 Probable glycerol dehydrogenase; structural genomi 83.64
3qsl_A346 Putative exported protein; unknown, structural gen 82.25
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=6.3e-84  Score=782.31  Aligned_cols=651  Identities=19%  Similarity=0.306  Sum_probs=529.5

Q ss_pred             cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCCCCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEEe
Q 036525            6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTSIRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYVD   85 (783)
Q Consensus         6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~d   85 (783)
                      +++|.|||||.+|..+.++++++++++||+|+++  .+..  .+++|+||+.|+   |+.+++++++++||++|++|| |
T Consensus        58 ~~~V~aiiG~~~S~~~~a~~~i~~~~~iP~is~~--~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d  129 (823)
T 3kg2_A           58 SRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPS--FPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-D  129 (823)
T ss_dssp             HTTCSEEEECCCTTTHHHHHHHHHHTTCEEEECS--CCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-C
T ss_pred             hcCcEEEEcCCChhHHHHHHHHhhcCCCceeecc--cCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-e
Confidence            3489999999999999999999999999999983  3333  357999999988   899999999999999999999 8


Q ss_pred             CCcCCcchHHHHHHHhhCCceEeEEEecCCC--CChhHHHHHHHHHhccCceEEEEEcChhhHHHHHHHHHHcCccccce
Q 036525           86 NQYGEAMIPSLTDALHAIDTRVPYRSVISPL--ATDDQIEKELYKLFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGC  163 (783)
Q Consensus        86 ~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~--~~~~d~~~~l~~l~~~~~dvii~~~~~~~~~~~~~~a~~~g~~~~~~  163 (783)
                      ++||++.++.+.+++++.|+||+..+.++.+  .++.|+.+++.+|+++++|+|++++...++..+++||+++||..++|
T Consensus       130 ~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~  209 (823)
T 3kg2_A          130 SDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGY  209 (823)
T ss_dssp             GGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTC
T ss_pred             CChhHHHHHHHHHHhhccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCe
Confidence            8999999999999999999999999877755  23569999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCcccccccCChhhhhcccceeEeeeC------------CCCCCcc--------cccchHHHHHHHHHHHHHHHH
Q 036525          164 VWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY------------ENPSLFD--------AELNIIGLLAYDATRALAEAV  223 (783)
Q Consensus       164 ~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~------------~~~~~~~--------~~~~~~~~~aYDAv~~la~Al  223 (783)
                      +||.++......+.  ....+...|+.++.++            +|.+.++        ..|+.+++++|||++++|+|+
T Consensus       210 ~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al  287 (823)
T 3kg2_A          210 HYIIANLGFTDGDL--LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAF  287 (823)
T ss_dssp             EEEECSSBSSSSCC--SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecccccccch--HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHH
Confidence            99999854322221  1222344567777655            2333332        236789999999999999999


Q ss_pred             HHhcccccCccccccCCCCcccccc--cCCCChHHHHHHHHcCccccceeeEEEe-cCccccceEEEEEec-CCcEEEEE
Q 036525          224 EKAGITSFGFDKINVSSNATDLEAF--GISQNGPKLLQALSSTRFKGLTGDYIFV-DGQLQSSAFEIINVN-NGARGVGF  299 (783)
Q Consensus       224 ~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~l~~aL~~~~f~g~~G~i~fd-~G~~~~~~~~I~~~~-~~~~~vg~  299 (783)
                      ++++....+..+..   ...+|...  ..|.+|++|+++|++++|+|++|+++|| +|++....|+|++++ ++++.||.
T Consensus       288 ~~~~~~~~~~~~~~---~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~  364 (823)
T 3kg2_A          288 RNLRKQRIEISRRG---NAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGY  364 (823)
T ss_dssp             HHHHTTTCCCCCSS---CCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEE
T ss_pred             HHHHhhccccccCC---CCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEE
Confidence            99987543322111   12334332  4577899999999999999999999998 899988999999999 88999999


Q ss_pred             ECCCCCCcc---------cceEEEEecccCCccccEEEe--eCCCCCCCccEEEeeHHHHHHHhhhCCCC------C---
Q 036525          300 WTPEKGLTQ---------KLKLRIGVPVKKGFSDFVNVT--IDPKTQEQTSVTGYCIDVFKAVIPELPYA------P---  359 (783)
Q Consensus       300 w~~~~~~~~---------~~~L~V~v~~~~p~~~f~~~~--~~~~~~~~~~~~G~~idl~~~ia~~l~f~------~---  359 (783)
                      |.+..++..         .++|+|++...+||.   +.+  .++.+++ +++.|||+||+++++++|||+      +   
T Consensus       365 w~~~~g~~~~~~~~~~~~~~~l~v~~~~~~P~~---~~~~~~~~~~~~-~~~~G~~~dl~~~~a~~l~~~~~~~~~~~~~  440 (823)
T 3kg2_A          365 WSEVDKMVLTEDDTSGLEQKTVVVTTILESPYV---MMKANHAALAGN-ERYEGYCVDLAAEIAKHCGFKYKLTIVGDGK  440 (823)
T ss_dssp             EETTTEEEECCCCCSSCCCCCEEEEECCCTTTS---EECTTGGGCCGG-GGEESHHHHHHHHHHHHHTCCEEEEECSSCC
T ss_pred             EcCCCCceeccCcccccCCCEEEEEEecCCCcE---EEecCccccCCC-CceEEEHHHHHHHHHHHcCCcEEEEEccCCc
Confidence            998876542         289999998878775   332  1223455 889999999999999999999      2   


Q ss_pred             CC---CCCCChHHHHHHHHcCeecEEEeceeeecccceeeeccccccccc-----------ccccceeeccCChhHHHHH
Q 036525          360 DG---SSSGSYNDLIYQVFLGEFDAVVGDITIVFNRSNYVGFTLPYTESG-----------KRNAWVFLQPLTWDLWVTS  425 (783)
Q Consensus       360 ~~---~~~~~~~gli~~l~~g~~Di~~~~~~~t~~R~~~vdFs~p~~~s~-----------~~~~~~~l~PF~~~vWl~i  425 (783)
                      +|   ..+++|++++++|.+|++|++++++++|++|.+.+|||.||+.++           .++++.|++||++.+|+++
T Consensus       441 ~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i  520 (823)
T 3kg2_A          441 YGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCI  520 (823)
T ss_dssp             CCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHH
T ss_pred             ccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEEEECCCcccccchHhhcCCchhHHHHH
Confidence            22   346789999999999999999999999999999999999999998           3567899999999999999


Q ss_pred             HHHHHHHHHhhheeecccCCCCCC--------------CccCccchhHHHHHHHhhhcccc-cccccchhhhHHHHHHHH
Q 036525          426 GCFFIFIGFVVWVFEHRINDDFRG--------------PAKHQVGTSFWFSFSTMVFSQRE-RVISNLARFVVIVWCFVV  490 (783)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~~~~~-~~~s~~~R~l~~~w~l~~  490 (783)
                      +++++++++++|+++|..+.+++.              ....++.+++|++++++++++.. .|++.++|+++++|||++
T Consensus       521 ~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~p~~~~~R~~~~~w~~~~  600 (823)
T 3kg2_A          521 VFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGADISPRSLSGRIVGGVWWFFT  600 (823)
T ss_dssp             HHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSCC------CCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHHhcCCCcCCcchhhhhHHHHHHHHH
Confidence            999999999999998875332221              11235779999999999988854 679999999999999999


Q ss_pred             HHHHHHhhhhhhheeeccccCCcccC----------------CchHHHHHHhcCCCc-----------ccceecCChhHH
Q 036525          491 LILTQSYTASLTSLLTVQQLQPTITD----------------GSFVLGILKQLGFDE-----------RKLVVYNSPEDC  543 (783)
Q Consensus       491 lil~s~Yta~L~s~Lt~~~~~~~i~s----------------gs~~~~~l~~~~~~~-----------~~~~~~~~~~~~  543 (783)
                      |||+++|+|+|+|+||++++.++|++                ++...+++++.....           .....+.+.+++
T Consensus       601 lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  680 (823)
T 3kg2_A          601 LIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEG  680 (823)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCCCHHHHHHHHHHHHCSSCCCBSSHHHH
T ss_pred             HHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhccchHHHHHHHHHHhcCCccccCCHHHH
Confidence            99999999999999999999999888                233445555432211           011234578888


Q ss_pred             HHHHh-cCcccCceeEEecchhHHHHHHhhc-CCceEEecccccccceEEEecCCCCChHHHHHHHHhhhcCChHHHHHH
Q 036525          544 HELFQ-KGSANGGIAAALDEIPYMKLLIGQH-CSKYTMIEPKFKTAGFGFVFPLHSPLVHDVSKAILNVTEGDKMKEIED  621 (783)
Q Consensus       544 ~~~l~-~g~~~~g~~a~~~~~~~~~~~~~~~-c~~l~~v~~~~~~~~~~~~~~k~spl~~~in~~il~l~e~G~~~~~~~  621 (783)
                      ++.+. .+.    .+|++.+.+.+.|+.+++ |+ ++++++.+...++++++||||||++.||++|++|+|+|++++|.+
T Consensus       681 ~~~~~~~~~----~~A~~~~~~~~~y~~~~~~c~-l~~v~~~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~~~~  755 (823)
T 3kg2_A          681 VARVRKSKG----KYAYLLESTMNEYIEQRKPCD-TMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKLKN  755 (823)
T ss_dssp             HHHHHTTTT----SEEEEEEHHHHHHHHTSTTCC-EEEESCCSSCEEECCEEETTCSSHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHhccCC----ceEEEechHHHHHHHhcCCCc-eEEccccccccceeEeecCCChHHHHHHHHHHHHHhCCcHHHHHH
Confidence            88886 333    689999999999988777 97 899999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCCCCCC--CcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 036525          622 AWFKKHSSCPDAST--VVSSRSLGLNSFWGLFLIAGIAAILALIIFLAVFVHQHRNVLR  678 (783)
Q Consensus       622 kw~~~~~~c~~~~~--~~~~~~L~l~~l~g~F~il~~g~~ls~~vfl~E~~~~~~~~~r  678 (783)
                      +|+.+...|.....  .....+|+++++.|+|+++++|+++|+++|++|++|++|+++|
T Consensus       756 ~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~~~~  814 (823)
T 3kg2_A          756 KWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAK  814 (823)
T ss_dssp             HHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             hhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcchhhh
Confidence            99988889987653  2456799999999999999999999999999999999887755
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A Back     alignment and structure
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A Back     alignment and structure
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* Back     alignment and structure
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A Back     alignment and structure
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus} Back     alignment and structure
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A* Back     alignment and structure
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* Back     alignment and structure
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} Back     alignment and structure
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A* Back     alignment and structure
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Back     alignment and structure
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* Back     alignment and structure
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens} Back     alignment and structure
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* Back     alignment and structure
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A* Back     alignment and structure
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A* Back     alignment and structure
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A* Back     alignment and structure
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima} Back     alignment and structure
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum} Back     alignment and structure
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei} Back     alignment and structure
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans} Back     alignment and structure
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A Back     alignment and structure
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A Back     alignment and structure
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} Back     alignment and structure
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A* Back     alignment and structure
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} Back     alignment and structure
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A Back     alignment and structure
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} Back     alignment and structure
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae} Back     alignment and structure
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B Back     alignment and structure
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} Back     alignment and structure
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix} Back     alignment and structure
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A* Back     alignment and structure
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A Back     alignment and structure
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1 Back     alignment and structure
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1 Back     alignment and structure
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A Back     alignment and structure
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ... Back     alignment and structure
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A Back     alignment and structure
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A Back     alignment and structure
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A Back     alignment and structure
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A* Back     alignment and structure
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A* Back     alignment and structure
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0 Back     alignment and structure
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ... Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Back     alignment and structure
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Back     alignment and structure
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 Back     alignment and structure
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Back     alignment and structure
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis} Back     alignment and structure
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Back     alignment and structure
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Back     alignment and structure
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Back     alignment and structure
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Back     alignment and structure
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} Back     alignment and structure
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Back     alignment and structure
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Back     alignment and structure
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Back     alignment and structure
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1 Back     alignment and structure
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A Back     alignment and structure
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa} Back     alignment and structure
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Back     alignment and structure
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp} Back     alignment and structure
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B* Back     alignment and structure
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A Back     alignment and structure
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli} Back     alignment and structure
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans} Back     alignment and structure
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans} Back     alignment and structure
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp} Back     alignment and structure
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} Back     alignment and structure
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes} Back     alignment and structure
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A* Back     alignment and structure
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} Back     alignment and structure
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis} Back     alignment and structure
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum} Back     alignment and structure
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} Back     alignment and structure
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} Back     alignment and structure
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis} Back     alignment and structure
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis} Back     alignment and structure
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans} Back     alignment and structure
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus} Back     alignment and structure
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} Back     alignment and structure
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A* Back     alignment and structure
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str} Back     alignment and structure
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} Back     alignment and structure
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125} Back     alignment and structure
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A* Back     alignment and structure
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} Back     alignment and structure
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ... Back     alignment and structure
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A* Back     alignment and structure
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} Back     alignment and structure
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis} Back     alignment and structure
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli} Back     alignment and structure
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A* Back     alignment and structure
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G* Back     alignment and structure
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii} Back     alignment and structure
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis} Back     alignment and structure
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens} Back     alignment and structure
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C Back     alignment and structure
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis} Back     alignment and structure
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae} Back     alignment and structure
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} Back     alignment and structure
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum} Back     alignment and structure
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} Back     alignment and structure
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A* Back     alignment and structure
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} Back     alignment and structure
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str} Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis} Back     alignment and structure
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} Back     alignment and structure
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A Back     alignment and structure
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1 Back     alignment and structure
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A* Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} Back     alignment and structure
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis} Back     alignment and structure
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A* Back     alignment and structure
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus} Back     alignment and structure
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A* Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp} Back     alignment and structure
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A* Back     alignment and structure
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus} Back     alignment and structure
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A* Back     alignment and structure
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli} Back     alignment and structure
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ... Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} Back     alignment and structure
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans} Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae} Back     alignment and structure
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A* Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A* Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae} Back     alignment and structure
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile} Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii} Back     alignment and structure
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus} Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A* Back     alignment and structure
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A Back     alignment and structure
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2 Back     alignment and structure
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli} Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp} Back     alignment and structure
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A* Back     alignment and structure
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti} Back     alignment and structure
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 783
d1ewka_477 c.93.1.1 (A:) Metabotropic glutamate receptor subt 1e-25
d1jdpa_401 c.93.1.1 (A:) Hormone binding domain of the atrial 2e-24
d1dp4a_425 c.93.1.1 (A:) Hormone binding domain of the atrial 3e-21
d1mqia_260 c.94.1.1 (A:) Glutamate receptor ligand binding co 3e-11
d1usga_346 c.93.1.1 (A:) Leucine-binding protein {Escherichia 2e-10
d1qo0a_373 c.93.1.1 (A:) Amide receptor/negative regulator of 2e-10
d3ckma1317 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemo 1e-08
d1pb7a_289 c.94.1.1 (A:) N-methyl-D-aspartate receptor subuni 8e-08
d2f34a1246 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor li 2e-07
d2a5sa1277 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate 3e-07
d2a5sa1277 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate 4e-05
d1ii5a_226 c.94.1.1 (A:) Glutamate receptor ligand binding co 2e-05
d1r3jc_103 f.14.1.1 (C:) Potassium channel protein {Streptomy 0.002
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 477 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Metabotropic glutamate receptor subtype 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  109 bits (272), Expect = 1e-25
 Identities = 56/358 (15%), Positives = 115/358 (32%), Gaps = 71/358 (19%)

Query: 7   AQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTS-IRSPYFFRGALNDSSQVG 65
             +  ++GP  S     +        +P +++SATS  L+      YF R   +D+ Q  
Sbjct: 119 KPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQAR 178

Query: 66  AITAIIKAFGWREAVPIYVDNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKE 125
           A+  I+K + W     ++ +  YGE+ + +  +        + +   I   A +   ++ 
Sbjct: 179 AMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDKIYSNAGEKSFDRL 238

Query: 126 LYK--LFTMQTRVFIVHKLPSLGSRIFEKANEIGLMNKGCVWIMTDGMTNLLRTLEPSVI 183
           L K      + RV +          +      +G++ +    I +DG  +    +E   +
Sbjct: 239 LRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVGE-FSLIGSDGWADRDEVIEGYEV 297

Query: 184 DSMQGVI----------------DVRPYENP----------SLFDAELNIIGL------- 210
           ++  G+                  +R   N             F   L    L       
Sbjct: 298 EANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKK 357

Query: 211 -------------------LAYDATRALAEAVEKAGITSFGFDKINVSSNATDLEAFGIS 251
                                 +A  A+A  ++             +      L      
Sbjct: 358 VCTGNESLEENYVQDSKMGFVINAIYAMAHGLQNM--------HHALCPGHVGLCDAMKP 409

Query: 252 QNGPKLLQALSSTRFKGLTGDYIFVDGQLQSSA-FEIINVNNGARG------VGFWTP 302
            +G KLL  L  + F G++G+ ++ D +  +   ++I+N+            VG W  
Sbjct: 410 IDGRKLLDFLIKSSFVGVSGEEVWFDEKGDAPGRYDIMNLQYTEANRYDYVHVGTWHE 467
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 425 Back     information, alignment and structure
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} Length = 260 Back     information, alignment and structure
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]} Length = 346 Back     information, alignment and structure
>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]} Length = 373 Back     information, alignment and structure
>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 317 Back     information, alignment and structure
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 289 Back     information, alignment and structure
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} Length = 246 Back     information, alignment and structure
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Length = 277 Back     information, alignment and structure
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Length = 277 Back     information, alignment and structure
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} Length = 226 Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query783
d1ewka_477 Metabotropic glutamate receptor subtype 1 {Rat (Ra 100.0
d1dp4a_425 Hormone binding domain of the atrial natriuretic p 99.97
d1jdpa_401 Hormone binding domain of the atrial natriuretic p 99.97
d1usga_346 Leucine-binding protein {Escherichia coli [TaxId: 99.95
d1qo0a_373 Amide receptor/negative regulator of the amidase o 99.95
d2a5sa1277 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 99.9
d1pb7a_289 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 99.87
d3ckma1317 YraM C-terminal domain {Haemophilus influenzae [Ta 99.84
d1mqia_260 Glutamate receptor ligand binding core {Rat (Rattu 99.83
d1ii5a_226 Glutamate receptor ligand binding core {Synechocys 99.8
d1wdna_223 Glutamine-binding protein {Escherichia coli [TaxId 99.78
d2f34a1246 Glutamate receptor ligand binding core {Rat (Rattu 99.74
d1xt8a1248 Putative amino-acid transporter CjaA {Campylobacte 99.72
d1lsta_238 Lysine-,arginine-,ornithine-binding (LAO) protein 99.62
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 96.46
d1jyea_271 Lac-repressor (lacR) core (C-terminal domain) {Esc 96.31
d8abpa_305 L-arabinose-binding protein {Escherichia coli [Tax 95.61
d1jx6a_338 Quorum-sensing signal (autoinducer-2) binding prot 95.52
d2fvya1305 Galactose/glucose-binding protein {Escherichia col 95.16
d1dbqa_282 Purine repressor (PurR), C-terminal domain {Escher 94.47
d2ozza1228 Hypothetical protein YhfZ {Shigella flexneri [TaxI 94.12
d2nzug1275 Glucose-resistance amylase regulator CcpA, C-termi 93.83
d1guda_288 D-allose-binding protein {Escherichia coli [TaxId: 93.76
d1byka_255 Trehalose repressor, C-terminal domain {Escherichi 93.74
d2dria_271 D-ribose-binding protein {Escherichia coli, strain 93.16
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 93.03
d1vlja_398 NADH-dependent butanol dehydrogenase A (TM0820) {T 91.92
d1rrma_385 Lactaldehyde reductase FucO {Escherichia coli [Tax 91.26
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 90.83
d1o2da_359 Alcohol dehydrogenase TM0920 {Thermotoga maritima 89.37
d2qy9a2211 GTPase domain of the signal recognition particle r 86.87
d1tjya_316 AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370 84.38
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 83.05
d1jq5a_366 Glycerol dehydrogenase {Bacillus stearothermophilu 80.28
>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Metabotropic glutamate receptor subtype 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.3e-34  Score=322.74  Aligned_cols=287  Identities=19%  Similarity=0.258  Sum_probs=232.6

Q ss_pred             cCCeEEEEccCCchhHHHHHcccCCCCccEEeeccCCCCCCC-CCCCeEEEeecCchhhHHHHHHHHHHcCCeEEEEEEE
Q 036525            6 NAQVRVMLGPEDSMPTNFIIQPGNKSQVPILSFSATSPSLTS-IRSPYFFRGALNDSSQVGAITAIIKAFGWREAVPIYV   84 (783)
Q Consensus         6 ~~~V~aiIGp~~S~~~~av~~~~~~~~vP~Is~~a~s~~ls~-~~~~~~fr~~p~~~~~~~ai~~~l~~~gw~~vaii~~   84 (783)
                      .++|.|||||.+|..+.+++.+++.++||+|+++++++.+++ ..||||||+.|++..|++|+++++++|||++|++||+
T Consensus       118 ~~~v~aviGp~~s~~s~~va~~~~~~~iP~IS~~ats~~lsd~~~yp~f~Rt~psd~~~~~ai~~ll~~f~W~~V~vi~~  197 (477)
T d1ewka_         118 KKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHT  197 (477)
T ss_dssp             -CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             ccceEEEECCCcchhHHHHHHHhhhccCceeccccCCccccccccCCceEEecccchhhHHHHHHHHHHcCCcEEEEEEe
Confidence            457999999999999999999999999999999999999987 5799999999999999999999999999999999999


Q ss_pred             eCCcCCcchHHHHHHHhhCCceEeEEEecCCCCChhHHHHHHHHHhcc--CceEEEEEcChhhHHHHHHHHHHcCccccc
Q 036525           85 DNQYGEAMIPSLTDALHAIDTRVPYRSVISPLATDDQIEKELYKLFTM--QTRVFIVHKLPSLGSRIFEKANEIGLMNKG  162 (783)
Q Consensus        85 d~~~G~~~~~~~~~~l~~~g~~v~~~~~i~~~~~~~d~~~~l~~l~~~--~~dvii~~~~~~~~~~~~~~a~~~g~~~~~  162 (783)
                      +++||+...+.|++++++.|+||+....++...+..++...+.+|++.  +++|||+++...++..++++|.++||.+ .
T Consensus       198 ~d~~g~~~~~~l~~~~~~~~i~v~~~~~i~~~~~~~~~~~~l~~l~~~~~~~rVIv~~~~~~~~~~ll~~a~~~g~~g-~  276 (477)
T d1ewka_         198 EGNYGESGMDAFKELAAQEGLCIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-E  276 (477)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTCCS-C
T ss_pred             cchhHHHHHHHHHHHHHHcCcEEEEEeeccCCCchhhHHHHHHHHhhhccCceEEEEecCHHHHHHHHHHHHHcCccC-C
Confidence            999999999999999999999999999998888888999999999865  7899999999999999999999999974 4


Q ss_pred             eEEEEeCCcccccccCChhhhhcccceeEeeeC-----------------CCCCC------------------c------
Q 036525          163 CVWIMTDGMTNLLRTLEPSVIDSMQGVIDVRPY-----------------ENPSL------------------F------  201 (783)
Q Consensus       163 ~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----------------~~~~~------------------~------  201 (783)
                      +.|+++++|......... ......|.+++.+.                 .++..                  .      
T Consensus       277 ~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~f~~~~~~~~~~~~~~n~~~~~~w~~~f~c~~~~~~~~~~~~  355 (477)
T d1ewka_         277 FSLIGSDGWADRDEVIEG-YEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNF  355 (477)
T ss_dssp             CEEEECTTTTTCHHHHTT-CHHHHTTCEEEEECCCCCHHHHHHHTTCCTTTCCSCTTHHHHHHHHTTCBCTTCTTCCTTC
T ss_pred             ceEEEecccccchhhccc-cccccCcceEeeeccccchhHHHHHHhcCcccCCCChHHHHHHHHHhCCCcccccccCccc
Confidence            678998887643222211 12234455554433                 00000                  0      


Q ss_pred             ------------ccccchHHHHHHHHHHHHHHHHHHhcccccCccccccCCCCcccccccCCCChHHHHHHHHcCccccc
Q 036525          202 ------------DAELNIIGLLAYDATRALAEAVEKAGITSFGFDKINVSSNATDLEAFGISQNGPKLLQALSSTRFKGL  269 (783)
Q Consensus       202 ------------~~~~~~~~~~aYDAv~~la~Al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~aL~~~~f~g~  269 (783)
                                  ...++.+++++|||||++|+||+++........       ...|+.. .+.+|.+|++.|++++|+|+
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~yDAV~a~A~AL~~~~~~~~~~~-------~~~~~~~-~~~~~~~l~~~l~~v~F~G~  427 (477)
T d1ewka_         356 KKVCTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPGH-------VGLCDAM-KPIDGRKLLDFLIKSSFVGV  427 (477)
T ss_dssp             CSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTTC-------SSCCGGG-SSCCHHHHHHHHHTCEEECT
T ss_pred             cccccchhhcccccccchHHHHHHHHHHHHHHHHHHHHHhhCCCC-------CCcccCC-CcCCHHHHHHHHhcCeeECC
Confidence                        011245788999999999999999865432111       1112222 23478999999999999999


Q ss_pred             ee-eEEEe-cCccccceEEEEEec---CC---cEEEEEECCC
Q 036525          270 TG-DYIFV-DGQLQSSAFEIINVN---NG---ARGVGFWTPE  303 (783)
Q Consensus       270 ~G-~i~fd-~G~~~~~~~~I~~~~---~~---~~~vg~w~~~  303 (783)
                      +| .+.|| +||+. ..|+|+|++   ++   ++.||.|++.
T Consensus       428 tG~~v~Fd~nGd~~-~~y~I~n~q~~~~~~~~~~~VG~w~~~  468 (477)
T d1ewka_         428 SGEEVWFDEKGDAP-GRYDIMNLQYTEANRYDYVHVGTWHEG  468 (477)
T ss_dssp             TSCEEECCTTSCCC-CCEEEEEEEECSSSCEEEEEEEEEETT
T ss_pred             CCCEEEECCCCCcc-ceEEEEEEEECCCCcEEEEEEEEEeCC
Confidence            99 59998 99985 889999987   22   7899999864
>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Back     information, alignment and structure
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]} Back     information, alignment and structure
>d1ii5a_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]} Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f34a1 c.94.1.1 (A:5-116,A:119-252) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR5 [TaxId: 10116]} Back     information, alignment and structure
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]} Back     information, alignment and structure
>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]} Back     information, alignment and structure
>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure