Citrus Sinensis ID: 036621

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370------
MVLLGNDDSPEDITIEILSRLPVKSLIRLRCVCKSWYALIKDPNFISMHLKNDVNTRLIVLYAKEDDTEEHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGLYCGIVFIEGLNNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTLRTNSWKNLKPIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFELECCWFSVYIYTESLIPLKGGDGVFDFDIPWHVLGVHQTE
cccccccccHHHHHHHHHHcccHHHHHHHHcccccHHHHcccHHHHHHHHHccccccEEEEEEEcccccccccccccccccccccccccccccccccccEEEEEEcEEccEEEEEccccEEEEEEcccccEEEcccccccccccccccccEEEEEEEcccccEEEEEEEEEEcccccccccccEEEEEEcccccEEEEcccccccccccccEEEcccEEEEEEEcccccEEEEEEEEccccEEEEEcccccccccccEEEEEEcccEEEEEEEccccEEEEEEEccccEEEEEEEcccccccEEEEEEEcccEEEEEcccEEEEEEcccccEEEEEEEEccEEEEEEEcccccccccccccccccccEEEEEEccc
ccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccEEEEEEEcccccccEcccccccccccccHcccccccccccccEEEccccEEEEEEEEEcccccEEEEccccccEEEccccccccccccccEEEEEEEccccccccEEEEEEEEEcccccccccccEEEEEEEccccccEEEEccccccccccccEEEEcEEEEEEEEccccccEEEEEEEcccccccccccccccccccEEEEEEEHcEEEEEEEcccccEEEEEEEEEEEEEEEEEEcccccccccEEEEcccEEEEEccccEEEEEEccccEEEEEEccccccEEEEEcccEEEEccccccEEEcccccEEEEEccc
mvllgnddspediTIEILSRLPVKSLIRLRCVCKSWYalikdpnfismhlkndVNTRLIVLYAkeddteehshpkeyfclfpdetledlslqdlstqepvlgsfkgLYCGIVFIEGLNNRITLWniatresitlpkyraiipqytrvfgtkigfgldpktkdYKVVLILTLWdekrdsscaFSLVAVYTLRtnswknlkpidytmrlssertyfDGAFYWLLKLENDNDSYVILSFNMADEkfqeiqgpcilessLDVTLGIYYQSLSLLILDNVDHCFKIWVMRKKNWIkqltvgpfigifqpllfwkkgaffvesnssqlllyepgtgelrdfeLECCWFSVYIYTesliplkggdgvfdfdipwhvlgvhqte
mvllgnddspeditieilsrlpvkslIRLRCVCKSWYALIkdpnfismhlknDVNTRLIVLYAKEDDTEEHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGLYCGIVFIEGLNNRITLWNIatresitlpkyraiiPQYTRVFGTkigfgldpktkdYKVVLILTlwdekrdsscAFSLVAVytlrtnswknlkpIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFELECCWFSVYIYTESLIPLKGGDGVFDFDIPWHVLGVHQTE
MVLLGNDDSPEDITIEILSRLPVKSLIRLRCVCKSWYALIKDPNFISMHLKNDVNTRLIVLYAKEDDTEEHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGLYCGIVFIEGLNNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTLRTNSWKNLKPIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFELECCWFSVYIYTESLIPLKGGDGVFDFDIPWHVLGVHQTE
************ITIEILSRLPVKSLIRLRCVCKSWYALIKDPNFISMHLKNDVNTRLIVLYAKE*********KEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGLYCGIVFIEGLNNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTLRTNSWKNLKPIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFELECCWFSVYIYTESLIPLKGGDGVFDFDIPWHVLGV****
******D***EDITIEILSRLPVKSLIRLRCVCKSWYALIKDPNFISMHLKNDVNTRLIVLYAKEDDTEEHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGLYCGIVFIEGLNNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTLRTNSWKNLKPIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFELECCWFSVYIYTESLIPLKGGDGVFDFDIPWHVLGVH***
********SPEDITIEILSRLPVKSLIRLRCVCKSWYALIKDPNFISMHLKNDVNTRLIVLYAKEDDTEEHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGLYCGIVFIEGLNNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTLRTNSWKNLKPIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFELECCWFSVYIYTESLIPLKGGDGVFDFDIPWHVLGVHQTE
******DDSPEDITIEILSRLPVKSLIRLRCVCKSWYALIKDPNFISMHLKNDVNTRLIVLYAKEDDTEEHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGLYCGIVFIEGLNNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTLRTNSWKNLKPIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFELECCWFSVYIYTESLIPLKGGDGVFDFDIPWHVLGVHQ**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MVLLGNDDSPEDITIEILSRLPVKSLIRLRCVCKSWYALIKDPNFISMHLKNDVNTRLIVLYAKEDDTEEHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGLYCGIVFIEGLNNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSLVAVYTLRTNSWKNLKPIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQEIQGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGIFQPLLFWKKGAFFVESNSSQLLLYEPGTGELRDFELECCWFSVYIYTESLIPLKGGDGVFDFDIPWHVLGVHQTE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query376 2.2.26 [Sep-21-2011]
Q9SU30413 F-box protein CPR30 OS=Ar yes no 0.864 0.786 0.251 9e-16
Q8GXC7427 F-box/kelch-repeat protei no no 0.606 0.533 0.288 2e-15
Q9LU24360 Putative F-box protein At no no 0.699 0.730 0.289 8e-15
Q9SFC7417 F-box protein At3g07870 O no no 0.864 0.779 0.239 2e-14
Q9LPH0408 Putative F-box protein At no no 0.742 0.683 0.267 3e-13
Q9C629475 Putative F-box protein At no no 0.702 0.555 0.268 3e-13
Q9SAB5363 Putative F-box/LRR-repeat no no 0.75 0.776 0.253 3e-13
Q9T0J4426 Putative F-box protein At no no 0.577 0.509 0.273 1e-12
Q5BPS3387 F-box protein DOR OS=Arab no no 0.715 0.695 0.281 1e-12
Q9FJJ4420 F-box protein At5g62510 O no no 0.627 0.561 0.285 3e-12
>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2 Back     alignment and function desciption
 Score = 84.7 bits (208), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 175/394 (44%), Gaps = 69/394 (17%)

Query: 10  PEDITIEILSRLPVKSLIRLRCVCKSWYALIKDPNFISMHLKNDVNT--RLIVLYAKE-- 65
           P DI  +I  RLP K+L+R R + K  Y LI DP+FI  HL   + T   L++L      
Sbjct: 5   PMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMILLRGALR 64

Query: 66  ---------DDTEEHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGLYCGIVFIEG 116
                    D   +  HP +     P E               V GS  GL        G
Sbjct: 65  LYSVDLDSLDSVSDVEHPMKRGG--PTE---------------VFGSSNGLI-------G 100

Query: 117 LNNRIT---LWNIATRESITLPKYRAIIPQYTRVFGTKI-GFGLDPKTKDYKVVLILTL- 171
           L+N  T   ++N +TR+   LP     +P  +   G    G G D  + DYKVV ++   
Sbjct: 101 LSNSPTDLAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFK 160

Query: 172 WDEKRDSSCAFSL-VAVYTLRTNSWKNLKPIDYTMR--------LSSERTY---FDGAFY 219
            D + +  C+F   V V++L+ NSWK ++ +  +++        L   R Y      + +
Sbjct: 161 IDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLH 220

Query: 220 WLLKLENDNDSY-VILSFNMADEKFQEIQGP-CILESSLDVTLGIYYQSLSLLILDNVDH 277
           W+L       ++ +I+ F++A E+F+ ++ P  +   ++D+ + I      L ++ N D 
Sbjct: 221 WVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQ 280

Query: 278 CF-KIWVMRKKN----WIKQLTVGPFIGI-----FQPLLFWK-KGAFFVESNSSQLLLYE 326
            +  +W+M++ N    W K  TV     +      +PL++ K K    +E N+++L+ ++
Sbjct: 281 SYVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFD 340

Query: 327 PGTGELRDFELECC--WFSVYIYTESLIPLKGGD 358
             + ++    ++ C   +S  +   SL+    GD
Sbjct: 341 LESKKMSTLRIKDCPSSYSAELVVSSLVLGCKGD 374
Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1 Back     alignment and function description
>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1 Back     alignment and function description
>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1 Back     alignment and function description
>sp|Q9LPH0|FB57_ARATH Putative F-box protein At1g53550 OS=Arabidopsis thaliana GN=At1g53550 PE=4 SV=2 Back     alignment and function description
>sp|Q9C629|FB35_ARATH Putative F-box protein At1g46840 OS=Arabidopsis thaliana GN=At1g46840 PE=4 SV=1 Back     alignment and function description
>sp|Q9SAB5|FBLK2_ARATH Putative F-box/LRR-repeat/kelch-repeat protein At1g11620 OS=Arabidopsis thaliana GN=At1g11620 PE=4 SV=1 Back     alignment and function description
>sp|Q9T0J4|FB249_ARATH Putative F-box protein At4g38870 OS=Arabidopsis thaliana GN=At4g38870 PE=4 SV=1 Back     alignment and function description
>sp|Q5BPS3|DOR_ARATH F-box protein DOR OS=Arabidopsis thaliana GN=DOR PE=1 SV=2 Back     alignment and function description
>sp|Q9FJJ4|FB298_ARATH F-box protein At5g62510 OS=Arabidopsis thaliana GN=At5g62510 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
224119696367 predicted protein [Populus trichocarpa] 0.896 0.918 0.373 5e-50
224117590441 f-box family protein [Populus trichocarp 0.904 0.770 0.329 3e-38
224133722443 predicted protein [Populus trichocarpa] 0.920 0.781 0.330 2e-37
224119700272 predicted protein [Populus trichocarpa] 0.675 0.933 0.390 1e-34
296090345423 unnamed protein product [Vitis vinifera] 0.882 0.784 0.331 5e-32
316996533394 hypothetical protein [Pyrus pyrifolia] 0.898 0.857 0.306 9e-32
197253333394 SFBB21-beta [Pyrus x bretschneideri] 0.928 0.885 0.315 1e-31
451321023394 S-Locus F-box 3-S34 [Pyrus x bretschneid 0.928 0.885 0.315 2e-31
197253343394 SFBB30-beta [Pyrus ussuriensis] 0.890 0.850 0.316 5e-31
301069172393 MdFBX17 [Malus x domestica] 0.896 0.857 0.313 5e-31
>gi|224119696|ref|XP_002318137.1| predicted protein [Populus trichocarpa] gi|222858810|gb|EEE96357.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 134/359 (37%), Positives = 194/359 (54%), Gaps = 22/359 (6%)

Query: 10  PEDITIEILSRLPVKSLIRLRCVCKSWYALIKDPNFISMHLKNDVNTRLIVLYAKEDDTE 69
           PED+ IEILS LPVK+L++ +CVCKSWY +I   NFIS+HL N  N        K     
Sbjct: 10  PEDVIIEILSLLPVKTLLQFKCVCKSWYGIITSSNFISLHLNNHYNN------IKSGHLL 63

Query: 70  EHSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGLYCGIVFIEGLNNRIT-LWNIAT 128
            H    +   LF DE+L DLS Q L    P+ G   G   GI +++  ++  + LWN AT
Sbjct: 64  AHFVCPQLLELFQDESLTDLSHQGLDP--PIRGRLCGPCNGIFYVDSEDSSGSGLWNPAT 121

Query: 129 RESITLP---KYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWD-EKRDSSCAFSL 184
           +E   LP   + ++ +P Y   +    GFG DP T DYKVV+I   +  E        SL
Sbjct: 122 KEFKLLPEKIRNKSSLPLY---YEDSYGFGFDPVTNDYKVVVIRESYTREYYLEKFPSSL 178

Query: 185 VAVYTLRTNSWKNLKPID--YTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEK 242
           V VYTLRT+SW+    +D  YT+  +   T  DG +YW  +  +     VILSFNMA + 
Sbjct: 179 VIVYTLRTDSWRCWGSLDQGYTLLGNYCYTNVDGVYYW--QAGHGVHMNVILSFNMATDA 236

Query: 243 FQEIQGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVMRKKNWIKQLTVGPFIGIF 302
           FQEIQ P   + +    L +Y+ S++   + NV+    IWV+ +  WI+Q    P + + 
Sbjct: 237 FQEIQEPDYDKPAYSTRLILYHDSIAFSTVHNVEKFLDIWVLNEGCWIRQFKSRPLLELR 296

Query: 303 QPLLFWKKGAFFVESNSSQLLLYEPGTGELRD--FELECCWFSVYIYTESLIPLKGGDG 359
            P+  WK G   ++S++ QL+LY+    EL+D  F+     + + +Y ESL+ +K G G
Sbjct: 297 NPVAHWKNGNVILDSDNDQLMLYDTNKQELKDLRFKGTGVCYEILVYRESLVSIKDGIG 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224117590|ref|XP_002331674.1| f-box family protein [Populus trichocarpa] gi|222874093|gb|EEF11224.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224133722|ref|XP_002327664.1| predicted protein [Populus trichocarpa] gi|222836749|gb|EEE75142.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224119700|ref|XP_002318138.1| predicted protein [Populus trichocarpa] gi|222858811|gb|EEE96358.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296090345|emb|CBI40164.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|316996533|dbj|BAJ52224.1| hypothetical protein [Pyrus pyrifolia] Back     alignment and taxonomy information
>gi|197253333|gb|ACH54101.1| SFBB21-beta [Pyrus x bretschneideri] Back     alignment and taxonomy information
>gi|451321023|emb|CCH26215.2| S-Locus F-box 3-S34 [Pyrus x bretschneideri] Back     alignment and taxonomy information
>gi|197253343|gb|ACH54106.1| SFBB30-beta [Pyrus ussuriensis] Back     alignment and taxonomy information
>gi|301069172|dbj|BAJ11965.1| MdFBX17 [Malus x domestica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query376
TAIR|locus:2825822475 AT1G46840 "AT1G46840" [Arabido 0.726 0.574 0.278 6.5e-16
TAIR|locus:2203708408 AT1G53550 "AT1G53550" [Arabido 0.752 0.693 0.268 1.2e-15
TAIR|locus:2082410427 AT3G06240 "AT3G06240" [Arabido 0.635 0.559 0.257 1.8e-15
TAIR|locus:2135615413 CPR1 "AT4G12560" [Arabidopsis 0.731 0.665 0.270 1.4e-14
TAIR|locus:2061325387 DOR "AT2G31470" [Arabidopsis t 0.707 0.687 0.288 2e-14
TAIR|locus:2027397363 AT1G11620 "AT1G11620" [Arabido 0.119 0.123 0.511 5.7e-14
TAIR|locus:2154169420 AT5G62510 "AT5G62510" [Arabido 0.731 0.654 0.291 5.8e-14
TAIR|locus:2089408374 AT3G16590 "AT3G16590" [Arabido 0.792 0.796 0.284 6.7e-14
TAIR|locus:2114673397 AT3G49450 "AT3G49450" [Arabido 0.715 0.677 0.279 1.4e-13
TAIR|locus:2075790370 AT3G10430 "AT3G10430" [Arabido 0.582 0.591 0.264 6e-13
TAIR|locus:2825822 AT1G46840 "AT1G46840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 223 (83.6 bits), Expect = 6.5e-16, P = 6.5e-16
 Identities = 89/320 (27%), Positives = 155/320 (48%)

Query:    12 DITIEILSRLPVKSLIRLRCVCKSWYALIKDPNFISMHLKNDVNT-RLIVLYAKEDDTEE 70
             D+ IEILSRL  KS+   RCV K W +L+   +F+   L++ ++  R+   +  +     
Sbjct:    34 DLVIEILSRLSAKSIAICRCVSKQWNSLLVSQDFVESFLRSSLSRPRIWFTFRFDGKWNF 93

Query:    71 HSHPKEYFCLFPDETLEDLSLQDLSTQEPVLGSFKGLY---C----GIVFI----EGLNN 119
              S P+      P +   +LS++     E  +GS++  Y   C    G +F+    +G+ +
Sbjct:    94 FSSPQ------PQKFGNNLSVE---ATEHHMGSYENWYMKSCQSVHGFIFMSYNSKGMTD 144

Query:   120 RI-TLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDS 178
             R   +WN  TR+ ITLPK     P+    F +   F  DP  K +KV L +T+ ++++ +
Sbjct:   145 RTQVIWNPCTRQLITLPKLE---PENLD-FNSF--FAYDPTEKQFKV-LCMTVVNKQQTT 197

Query:   179 SCAFSLVAVYTLRTNS--WKNLK-PIDYTMRLSSERTY-FDGAFYWLLKLENDNDSYVIL 234
             S  +    V TL T    W+N++ P  Y +R  S R    +G  Y++  ++    + +I+
Sbjct:   198 SYKYQ---VLTLGTGPLLWRNIECPFMYRLRDKSNRGICINGVLYFIGWIKCS--TMIII 252

Query:   235 SFNMADEKFQEIQGPCILESSLDVTLGIYYQSLSLLILDNVDHCFKIWVM---RKKNWIK 291
              F+++ EKF  I+    +E++  VTL  Y   L + ++       ++WV+   +  NW K
Sbjct:   253 CFDVSSEKFSFIK----IENAFIVTLINYRGKLGVYLVVYGSPRGEVWVLDDTKNDNWSK 308

Query:   292 QLTVGPFIGIFQPLLFWKKG 311
                V P+ G  Q    W  G
Sbjct:   309 HNFVCPYSG--QENSTWATG 326
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016020 "membrane" evidence=ISS
TAIR|locus:2203708 AT1G53550 "AT1G53550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061325 DOR "AT2G31470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027397 AT1G11620 "AT1G11620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154169 AT5G62510 "AT5G62510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089408 AT3G16590 "AT3G16590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2114673 AT3G49450 "AT3G49450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075790 AT3G10430 "AT3G10430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
TIGR01640230 TIGR01640, F_box_assoc_1, F-box protein interactio 9e-22
pfam0064648 pfam00646, F-box, F-box domain 1e-08
pfam1293747 pfam12937, F-box-like, F-box-like 2e-08
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 3e-08
pfam08268125 pfam08268, FBA_3, F-box associated domain 2e-05
pfam07734159 pfam07734, FBA_1, F-box associated 1e-04
>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain Back     alignment and domain information 
 Score = 92.4 bits (230), Expect = 9e-22
 Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 13/182 (7%)

Query: 119 NRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDS 178
            R+ +WN +T +S  LP       + +         G DP  K YKV+         R  
Sbjct: 14  KRLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCF-----SDRSG 65

Query: 179 SCAFSLVAVYTLRTNSWKNLKPIDYTMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNM 238
           +   S   VYTL +NSW+ ++       L S     +G  Y+L      N  Y I+SF++
Sbjct: 66  NRNQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDV 125

Query: 239 ADEKFQE-IQGPCILESSLD-VTLGIYYQSLSLLILDNVDHCFKIWVMRKK---NWIKQL 293
           + E+F+E I  PC    S+D ++L  Y   L++L      + F +WV+       W K  
Sbjct: 126 SSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLF 185

Query: 294 TV 295
           TV
Sbjct: 186 TV 187

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information
>gnl|CDD|219769 pfam08268, FBA_3, F-box associated domain Back     alignment and domain information
>gnl|CDD|219544 pfam07734, FBA_1, F-box associated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 376
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 100.0
PF07734164 FBA_1: F-box associated; InterPro: IPR006527 This 99.7
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 99.57
PF08268129 FBA_3: F-box associated domain; InterPro: IPR01318 99.54
PHA02713557 hypothetical protein; Provisional 99.42
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.37
PHA02713557 hypothetical protein; Provisional 99.36
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 99.35
PHA02790480 Kelch-like protein; Provisional 99.31
PHA03098534 kelch-like protein; Provisional 99.27
PLN02153341 epithiospecifier protein 99.19
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 99.11
PLN02193470 nitrile-specifier protein 99.1
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 99.05
PHA02790480 Kelch-like protein; Provisional 99.03
PHA03098534 kelch-like protein; Provisional 99.01
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 98.93
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.87
PLN02153341 epithiospecifier protein 98.84
PRK14131376 N-acetylneuraminic acid mutarotase; Provisional 98.79
PLN02193470 nitrile-specifier protein 98.79
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 98.72
smart0025641 FBOX A Receptor for Ubiquitination Targets. 98.71
TIGR03547346 muta_rot_YjhT mutatrotase, YjhT family. Members of 98.69
TIGR03548323 mutarot_permut cyclically-permuted mutatrotase fam 98.62
KOG4693392 consensus Uncharacterized conserved protein, conta 98.23
KOG1230 521 consensus Protein containing repeated kelch motifs 97.95
KOG4693392 consensus Uncharacterized conserved protein, conta 97.92
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.35
KOG0379 482 consensus Kelch repeat-containing proteins [Genera 97.19
KOG0379482 consensus Kelch repeat-containing proteins [Genera 97.0
KOG1230 521 consensus Protein containing repeated kelch motifs 96.73
PF1396450 Kelch_6: Kelch motif 96.61
KOG2997366 consensus F-box protein FBX9 [General function pre 96.35
KOG0281499 consensus Beta-TrCP (transducin repeats containing 96.18
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 95.86
PF02191250 OLF: Olfactomedin-like domain; InterPro: IPR003112 95.4
smart00284255 OLF Olfactomedin-like domains. 95.08
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 95.07
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 94.56
smart0061247 Kelch Kelch domain. 93.56
KOG2055514 consensus WD40 repeat protein [General function pr 92.26
PF07893342 DUF1668: Protein of unknown function (DUF1668); In 91.44
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 91.21
PF1396450 Kelch_6: Kelch motif 90.95
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 90.59
TIGR01640230 F_box_assoc_1 F-box protein interaction domain. Th 90.35
smart0061247 Kelch Kelch domain. 89.92
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 89.14
PF07762131 DUF1618: Protein of unknown function (DUF1618); In 88.84
KOG4341483 consensus F-box protein containing LRR [General fu 88.78
KOG4152 830 consensus Host cell transcription factor HCFC1 [Ce 88.17
PF05096264 Glu_cyclase_2: Glutamine cyclotransferase; InterPr 87.95
PF06433342 Me-amine-dh_H: Methylamine dehydrogenase heavy cha 87.88
PF1341549 Kelch_3: Galactose oxidase, central domain 87.26
PF07250243 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP 87.16
KOG0316307 consensus Conserved WD40 repeat-containing protein 85.33
KOG3545249 consensus Olfactomedin and related extracellular m 84.41
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 83.14
PF0764649 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is 83.1
KOG0310 487 consensus Conserved WD40 repeat-containing protein 82.15
COG3055381 Uncharacterized protein conserved in bacteria [Fun 82.06
PF02897414 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal 81.3
COG3055 381 Uncharacterized protein conserved in bacteria [Fun 81.11
PF1341849 Kelch_4: Galactose oxidase, central domain; PDB: 2 80.96
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 80.82
PLN02772 398 guanylate kinase 80.66
PF0134447 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is 80.54
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information 
Probab=100.00  E-value=2.2e-33  Score=246.60  Aligned_cols=215  Identities=26%  Similarity=0.383  Sum_probs=164.0

Q ss_pred             ccceeceEEEecCCCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCcccce
Q 036621          105 KGLYCGIVFIEGLNNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSCAFSL  184 (376)
Q Consensus       105 ~~s~~Gll~~~~~~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~~~~  184 (376)
                      ++|||||||+... ..++||||+||+++.||+++.......   ...++||||+.+++||||++..   .......  ..
T Consensus         1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~---~~~~~~G~d~~~~~YKVv~~~~---~~~~~~~--~~   71 (230)
T TIGR01640         1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKE---SDTYFLGYDPIEKQYKVLCFSD---RSGNRNQ--SE   71 (230)
T ss_pred             CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCcccccc---cceEEEeecccCCcEEEEEEEe---ecCCCCC--cc
Confidence            4799999999876 789999999999999998764211111   0147999999999999999954   1111123  68


Q ss_pred             EEEEEcCCCceEeccCCCc-cccCCcceeEeCceEEEEecccCCCCceEEEEEEcCcccee-eecCCCCCCCC-CceEEE
Q 036621          185 VAVYTLRTNSWKNLKPIDY-TMRLSSERTYFDGAFYWLLKLENDNDSYVILSFNMADEKFQ-EIQGPCILESS-LDVTLG  261 (376)
Q Consensus       185 ~~vyss~t~~W~~~~~~p~-~~~~~~~~v~~~G~lYwl~~~~~~~~~~~il~fD~~~~~~~-~i~~P~~~~~~-~~~~l~  261 (376)
                      ++||++++++||.++..+. .... ..+|++||++||+...........|++||+.+|+|+ .+++|...... ....|+
T Consensus        72 ~~Vys~~~~~Wr~~~~~~~~~~~~-~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~  150 (230)
T TIGR01640        72 HQVYTLGSNSWRTIECSPPHHPLK-SRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLI  150 (230)
T ss_pred             EEEEEeCCCCccccccCCCCcccc-CCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEE
Confidence            9999999999999984333 2222 339999999999997643212238999999999999 58999865422 256899


Q ss_pred             EECCeEEEEEEecCCCEEEEEEecC---CceeeEEEEccCCc---e---eEeEEEeeCCcEEEEecC--CE-EEEEECCC
Q 036621          262 IYYQSLSLLILDNVDHCFKIWVMRK---KNWIKQLTVGPFIG---I---FQPLLFWKKGAFFVESNS--SQ-LLLYEPGT  329 (376)
Q Consensus       262 ~~~G~L~~~~~~~~~~~l~iW~l~~---~~W~~~~~i~~~~~---~---~~~~~~~~~~~l~~~~~~--~~-~~~yd~~~  329 (376)
                      +++|+||++.......+++||+|++   .+|++.++| +...   +   ..+.++.++|+|++...+  +. +++||+++
T Consensus       151 ~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i-~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~~~  229 (230)
T TIGR01640       151 NYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTV-PIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNVGE  229 (230)
T ss_pred             EECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEE-cCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEEeccC
Confidence            9999999999853345699999997   679999999 5422   2   347888899999888764  44 99999998


Q ss_pred             C
Q 036621          330 G  330 (376)
Q Consensus       330 ~  330 (376)
                      +
T Consensus       230 ~  230 (230)
T TIGR01640       230 N  230 (230)
T ss_pred             C
Confidence            5

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PLN02153 epithiospecifier protein Back     alignment and domain information
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional Back     alignment and domain information
>PLN02193 nitrile-specifier protein Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family Back     alignment and domain information
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] Back     alignment and domain information
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium [] Back     alignment and domain information
>smart00284 OLF Olfactomedin-like domains Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PF13964 Kelch_6: Kelch motif Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>TIGR01640 F_box_assoc_1 F-box protein interaction domain Back     alignment and domain information
>smart00612 Kelch Kelch domain Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 Back     alignment and domain information
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 Back     alignment and domain information
>PF13415 Kelch_3: Galactose oxidase, central domain Back     alignment and domain information
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02772 guanylate kinase Back     alignment and domain information
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query376
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 2e-07
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 2e-07
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 3e-07
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 4e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.5 bits (125), Expect = 1e-07
 Identities = 65/430 (15%), Positives = 124/430 (28%), Gaps = 147/430 (34%)

Query: 4   LGNDDSPEDITIEILSRLPVKSLIRLRCVCKSWYALIKDPNFISMHLKNDVNTR-----L 58
           L N +SPE + +E+L +L  +              +    + I   L+  + ++     L
Sbjct: 189 LKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 59  IVLYAKEDDTEEHSHPK--EYF---C-------------------------------LFP 82
           +VL     +     + K    F   C                               L P
Sbjct: 248 LVL----LNV---QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300

Query: 83  DETLE------DLSLQDLSTQE----PVLGSFKGLYCGIVFIEGLNNRITLWNIATRESI 132
           DE         D   QDL  +     P   S        +  E + + +  W+    + +
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLS--------IIAESIRDGLATWD--NWKHV 350

Query: 133 TLPKYRAII--------PQYTR-------VF--GTKIGFGLDPKTKDYKVVLILTLWDEK 175
              K   II        P   R       VF     I     P      ++ +  +W + 
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-----P----TILLSL--IWFDV 399

Query: 176 R--------DSSCAFSLVA------VYTLRTNSWKNLKPID------------YTMRLSS 209
                    +    +SLV         ++ +   +    ++            Y +  + 
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 210 ERTYF-----DGAFYW-----LLKLENDND----SYVILSFNMADEKFQEIQGPCILESS 255
           +         D  FY      L  +E+         V L F   ++K +          S
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGS 519

Query: 256 LDVTLG--IYYQSLSLLILDNVDHCFKIWVMRKKNWIKQ----LTVGPFIGIFQPLLFWK 309
           +  TL    +Y+     I DN D  ++  V    +++ +    L    +  + +  L  +
Sbjct: 520 ILNTLQQLKFYKP---YICDN-DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAE 575

Query: 310 KGAFFVESNS 319
             A F E++ 
Sbjct: 576 DEAIFEEAHK 585
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297 Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.47
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.46
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.46
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.45
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.43
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.43
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 99.39
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 99.37
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 99.36
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 99.32
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 99.29
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 99.2
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.2
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 99.16
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 99.09
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 99.0
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.98
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 98.89
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.73
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.71
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.63
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 98.47
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 98.07
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 98.07
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.48
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.96
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 96.34
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 95.73
3ei3_B383 DNA damage-binding protein 2; UV-damage, DDB, nucl 95.44
3jrp_A379 Fusion protein of protein transport protein SEC13 94.63
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 94.43
3jro_A 753 Fusion protein of protein transport protein SEC13 94.35
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 94.02
1l0q_A391 Surface layer protein; SLP, S-layer, 7-bladed beta 93.68
3hfq_A 347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 93.01
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 92.59
3mbr_X243 Glutamine cyclotransferase; beta-propeller; 1.44A 92.58
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 92.48
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 92.24
1l0q_A 391 Surface layer protein; SLP, S-layer, 7-bladed beta 92.09
3fm0_A345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 92.02
4e54_B435 DNA damage-binding protein 2; beta barrel, double 91.93
3bws_A433 Protein LP49; two-domain, immunoglobulin-like, 7-b 91.82
4g56_B357 MGC81050 protein; protein arginine methyltransfera 91.7
2aq5_A402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 91.45
2iwa_A266 Glutamine cyclotransferase; pyroglutamate, acyltra 90.93
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 90.7
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 89.98
3nol_A262 Glutamine cyclotransferase; beta-propeller, glutam 89.69
3hfq_A347 Uncharacterized protein LP_2219; Q88V64_lacpl, NES 89.68
2pm9_A416 Protein WEB1, protein transport protein SEC31; bet 89.6
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 88.79
3dsm_A328 Uncharacterized protein bacuni_02894; seven_blated 88.71
1npe_A267 Nidogen, entactin; glycoprotein, basement membrane 88.08
4gga_A420 P55CDC, cell division cycle protein 20 homolog; ce 88.08
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 88.08
1k8k_C 372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 87.22
3nok_A268 Glutaminyl cyclase; beta-propeller, cyclotransfera 87.05
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 86.84
3q7m_A376 Lipoprotein YFGL, BAMB; beta-propeller, BAM comple 86.74
2dg1_A 333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 86.59
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 86.42
3sjl_D386 Methylamine dehydrogenase heavy chain; MAUG, C-hem 85.26
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 85.05
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 85.0
3scy_A361 Hypothetical bacterial 6-phosphogluconolactonase; 84.93
2ojh_A297 Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 84.83
2qc5_A 300 Streptogramin B lactonase; beta propeller, lyase; 84.73
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 84.54
1ri6_A343 Putative isomerase YBHE; 7-bladed propeller, enzym 84.49
3jrp_A 379 Fusion protein of protein transport protein SEC13 84.32
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 83.18
2hqs_A415 Protein TOLB; TOLB, PAL, TOL, transport protein-li 82.75
3fm0_A 345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 81.47
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 81.03
2p4o_A 306 Hypothetical protein; putative lactonase, structur 80.91
2vdu_B 450 TRNA (guanine-N(7)-)-methyltransferase- associated 80.66
2fp8_A322 Strictosidine synthase; six bladed beta propeller 80.58
4e54_B435 DNA damage-binding protein 2; beta barrel, double 80.28
3i2n_A357 WD repeat-containing protein 92; WD40 repeats, str 80.22
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
Probab=99.47  E-value=3.7e-11  Score=108.69  Aligned_cols=210  Identities=13%  Similarity=0.053  Sum_probs=142.9

Q ss_pred             cceeceEEEecC-----CCeEEEEecCcccceecCCCccCCCCccccccceEEEeeeCCCCCeEEEEEEEEecCCCCCCc
Q 036621          106 GLYCGIVFIEGL-----NNRITLWNIATRESITLPKYRAIIPQYTRVFGTKIGFGLDPKTKDYKVVLILTLWDEKRDSSC  180 (376)
Q Consensus       106 ~s~~Gll~~~~~-----~~~~~v~NP~T~~~~~LP~~~~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~  180 (376)
                      ...+|.|.+..+     ...+.++||.|++|..+|+++......      . ...++     =+++.++. +.. .....
T Consensus        52 ~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~------~-~~~~~-----~~iyv~GG-~~~-~~~~~  117 (306)
T 3ii7_A           52 VFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSL------A-ACAAE-----GKIYTSGG-SEV-GNSAL  117 (306)
T ss_dssp             EEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSC------E-EEEET-----TEEEEECC-BBT-TBSCC
T ss_pred             EEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccce------e-EEEEC-----CEEEEECC-CCC-CCcEe
Confidence            345777766653     367999999999999998877543222      1 11222     24555532 211 11222


Q ss_pred             ccceEEEEEcCCCceEeccCCCccccCCcceeEeCceEEEEecccCCCC----ceEEEEEEcCccceeee-cCCCCCCCC
Q 036621          181 AFSLVAVYTLRTNSWKNLKPIDYTMRLSSERTYFDGAFYWLLKLENDND----SYVILSFNMADEKFQEI-QGPCILESS  255 (376)
Q Consensus       181 ~~~~~~vyss~t~~W~~~~~~p~~~~~~~~~v~~~G~lYwl~~~~~~~~----~~~il~fD~~~~~~~~i-~~P~~~~~~  255 (376)
                        ..+++|+..+++|+.++.+|..... ...+.++|.+|.+++......    ...+..||+.+++|+.+ ++|....  
T Consensus       118 --~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~--  192 (306)
T 3ii7_A          118 --YLFECYDTRTESWHTKPSMLTQRCS-HGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARK--  192 (306)
T ss_dssp             --CCEEEEETTTTEEEEECCCSSCCBS-CEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCB--
T ss_pred             --eeEEEEeCCCCceEeCCCCcCCcce-eEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhh--
Confidence              6899999999999999988775444 668889999999997643222    56799999999999999 5665544  


Q ss_pred             CceEEEEECCeEEEEEEecCC-CEEEEEEecC--CceeeEEEEccCCceeEeEEEeeCCcEEEEec------CCEEEEEE
Q 036621          256 LDVTLGIYYQSLSLLILDNVD-HCFKIWVMRK--KNWIKQLTVGPFIGIFQPLLFWKKGAFFVESN------SSQLLLYE  326 (376)
Q Consensus       256 ~~~~l~~~~G~L~~~~~~~~~-~~l~iW~l~~--~~W~~~~~i~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~yd  326 (376)
                       ...++..+|+|+++...... ..-.+|+++-  .+|+.+..+ |...... .++..++.|++..+      ...+..||
T Consensus       193 -~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~-~~~~~~~~i~v~GG~~~~~~~~~~~~yd  269 (306)
T 3ii7_A          193 -NHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM-PWKGVTV-KCAAVGSIVYVLAGFQGVGRLGHILEYN  269 (306)
T ss_dssp             -SCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCC-SCCBSCC-EEEEETTEEEEEECBCSSSBCCEEEEEE
T ss_pred             -cceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCC-CCCccce-eEEEECCEEEEEeCcCCCeeeeeEEEEc
Confidence             45677789999999874211 1124555554  899998777 6554322 33334677777654      14699999


Q ss_pred             CCCCCEEEEEE
Q 036621          327 PGTGELRDFEL  337 (376)
Q Consensus       327 ~~~~~~~~v~~  337 (376)
                      +++++|+++..
T Consensus       270 ~~~~~W~~~~~  280 (306)
T 3ii7_A          270 TETDKWVANSK  280 (306)
T ss_dssp             TTTTEEEEEEE
T ss_pred             CCCCeEEeCCC
Confidence            99999999864
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A Back     alignment and structure
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} Back     alignment and structure
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} Back     alignment and structure
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Back     alignment and structure
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A Back     alignment and structure
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Back     alignment and structure
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 376
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 4e-10
d2ovrb1102 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing 1e-06
d1p22a1118 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b 2e-06
d1nexb1100 a.158.1.1 (B:270-369) Cdc4 F-box and linker domain 2e-04
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (126), Expect = 4e-10
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 7  DDSPEDITIEILSRLPVKSLIRLRCVCKSWYALIKDPNF 45
          D  P+++ + I S L +  L+++  VCK WY L  D + 
Sbjct: 2  DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query376
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 99.25
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.9
d1zgka1288 Kelch-like ECH-associated protein 1, KEAP1 {Human 98.88
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 98.65
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 98.51
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.24
d1k3ia3 387 Galactose oxidase, central domain {Fungi (Fusarium 98.2
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 98.15
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 93.75
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 90.57
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 88.86
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 86.79
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 85.47
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 85.07
d2p4oa1 302 Hypothetical protein All0351 homologue {Nostoc pun 84.06
d2dg1a1 319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 82.21
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.2e-12  Score=78.45  Aligned_cols=39  Identities=33%  Similarity=0.741  Sum_probs=36.9

Q ss_pred             CCCcHHHHHHHHccCCccccccccccchhhHhhcCChHH
Q 036621            7 DDSPEDITIEILSRLPVKSLIRLRCVCKSWYALIKDPNF   45 (376)
Q Consensus         7 ~~LP~Dll~~IL~rLp~~~l~r~r~VcK~W~~lis~p~F   45 (376)
                      +.||+|++.+||++||++++.|+++|||+|+.+++++.+
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            579999999999999999999999999999999998864
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure