Citrus Sinensis ID: 036652

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Protein Sequence
MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAALEYQQAAMEAKPAEEHHHQVLDHFPFLGDQQPSSVLQLATNSIPHQIHPYHHLQLAQPNLQDPNV
Secondary Structure (PSIPRED)
cccccccHHHccccccccccccccccccHHHHHHHHHcccccEEEEEEcccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEcHHHcHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccccccccccccccccHcccccccccccccEEEEcccccccccccc
Coil and Loop (DISEMBL)
MGRGKIAIkrienpttrqvTFSKRRAGLLKKTHELSVLCDAQIGLIIFsstgklcqyctepFRMEQIIERRLKVtgtripehdsrEQIFNELAVLRKETRRLQLSMRRYtgedlgsipyddldQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAALEYQQAAMEakpaeehhhqvldhfpflgdqqpssvlqlatnsiphqihpyhhlqlaqpnlqdpnv
Flexible Loop (DISEMBL)
mgrgkiaikrienpttrqvtfskrragllkktheLSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTgtripehdsreqiFNELAVLRKETRRLQLSMRrytgedlgsipyddLDQLEHELESSvnkvrdrkNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAALEYQQAAMEAKPAEEHHHQVLDHFPFLGDQQPSSVLQLATNSIPHQIHPYHHLqlaqpnlqdpnv
Low Complexity Region (SEG)
MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAALEYQQAAMEAKPAEEHHHQVLDHFPFLGDQQPSSVLQLATNSIPHQIHPYHHLQLAQPNLQDPNV
Disordered region (IsUnstruct)
******************VTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPE****EQIFNELAVLRKETRRLQLSMRRYT*******************************************************YRWIQEHRAAL******************VLDHFPFLG*******LQLATNSIPHQIHPYHH*************
Disordered Region (DISOPRED)
MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTG***********IFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQ*************************************************HQIHPYHHL************
Disordered Region (DISEMBL)
MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAALEYQQAA**********HQVLDHFPFLGDQQPSSVLQLATNSIPHQIHPYHHLQLAQPNLQDPNV
Disordered Region (DISPRO)
*****IAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAA*E**********************PFLGDQQPSSVLQLATNSIPHQIHPYHHLQLAQPNL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMYRWIQEHRAALEYQQAAMEAKPAEEHHHQVLDHFPFLGDQQPSSVLQLATNSIPHQIHPYHHLQLAQPNLQDPNV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	240	2.2.26 [Sep-21-2011]
Q8RYD9	252	Protein TRANSPARENT TESTA	yes	no	0.983	0.936	0.561	2e-71
Q9ATE5	268	MADS-box protein FBP24 OS	N/A	no	0.987	0.884	0.519	4e-64
Q8RVL4	247	MADS-box protein defh21 O	N/A	no	0.958	0.931	0.490	6e-55
Q8VWM8	259	MADS-box protein ZMM17 OS	N/A	no	0.970	0.899	0.464	2e-52
Q6H711	260	MADS-box transcription fa	yes	no	0.983	0.907	0.469	6e-52
Q9XGJ4	237	MADS-box protein GGM13 OS	N/A	no	0.929	0.940	0.477	9e-52
Q9LLA7	210	MADS-box protein AeAP3-2	N/A	no	0.829	0.947	0.484	5e-42
Q84NC2	178	MADS-box transcription fa	no	no	0.583	0.786	0.514	2e-37
Q655V4	221	MADS-box transcription fa	no	no	0.704	0.764	0.476	3e-37
Q39371	256	Floral homeotic protein A	N/A	no	0.745	0.699	0.423	8e-35

>sp|Q8RYD9|TT16_ARATH Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1

 Score =  268 bits (685), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 142/253 (56%), Positives = 185/253 (73%), Gaps = 17/253 (6%)

Query: 1   MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           MGRGKI IK+IEN T RQVTFSKRR GL+KKT ELS+LCDA IGLI+FS+TGKL ++C+E
Sbjct: 1   MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSE 60

Query: 61  PFRMEQIIERRLKVTGTRIPEH-DSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPY 119
             RM Q+I+R L   G R+P+H D +EQ+ +E+ +LR+ET  L+L +R + G DL SIP 
Sbjct: 61  QNRMPQLIDRYLHTNGLRLPDHHDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPP 120

Query: 120 DDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAALEYQ 179
           ++LD LE +LE SV KVR+RKNEL+QQQL+NL RK RMLEE+N+NMYRW+ EHRAA+E+Q
Sbjct: 121 NELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDNNNMYRWLHEHRAAMEFQ 180

Query: 180 QAAMEAKPAEEHHHQVLDHFPFLGDQQ-----------PSSVLQLATNSIPHQIHPYHHL 228
           QA ++ KP E  + Q ++        +           P+SVLQLAT  +P +I P ++L
Sbjct: 181 QAGIDTKPGE--YQQFIEQLQCYKPGEYQQFLEQQQQQPNSVLQLAT--LPSEIDPTYNL 236

Query: 229 QLAQPNLQ-DPNV 240
           QLAQPNLQ DP  
Sbjct: 237 QLAQPNLQNDPTA 249

Transcription factor involved in the developmental regulation of the endothelium and in the accumulation of proanthocyanidins (PAs) or condensed tannins which give the seed its brown pigmentation after oxidation. Necessary for the normal activation of the BANYULS promoter in the endothelium body.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ATE5|FBP24_PETHY MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1

 Score =  244 bits (623), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 136/262 (51%), Positives = 183/262 (69%), Gaps = 25/262 (9%)

Query: 1   MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           MGRGKI +KRIEN T+RQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSS GKL +YC++
Sbjct: 4   MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQ 63

Query: 61  PFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYD 120
           P  M QII R L+ TG  +P  D+R Q+++E+A +R++T  LQLS++RY G+DL    Y+
Sbjct: 64  PHSMSQIISRYLQTTGASLPVEDNRVQLYDEVAKMRRDTLNLQLSLQRYKGDDLSLAQYE 123

Query: 121 DLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI------QEHRA 174
           +L++LE +LE ++NK+R RK EL+QQQ++NL++ E+MLE+EN +MY+W+      ++  A
Sbjct: 124 ELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENHDMYQWLMNNQMYKQESA 183

Query: 175 AL---------EYQQAAMEAKPAEEHHHQVLDHFPFLGDQ-QP--SSVLQLATNSI---- 218
           A+         E+QQA  E     E    +L HF F GDQ QP  S+V   A+ S+    
Sbjct: 184 AMDHEDHHHHHEHQQAITELNLLGE--QPLLSHFTFFGDQEQPSTSTVNHFASISLTSPP 241

Query: 219 PHQIHPYHHLQLAQPNLQDPNV 240
            + I PY  LQ + PNLQD +V
Sbjct: 242 ANSISPY-RLQPSHPNLQDSHV 262

Probable transcription factor.

Petunia hybrida (taxid: 4102)

>sp|Q8RVL4|DEF21_ANTMA MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1

 Score =  214 bits (544), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 123/251 (49%), Positives = 167/251 (66%), Gaps = 21/251 (8%)

Query: 1   MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           MGRGKI +KRIEN T+RQVTFSKRR+GL+KKTHELSVLCDAQIGLI+FS+ GKL +YCT 
Sbjct: 1   MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTP 60

Query: 61  PFRMEQIIERRLKVTGTRIPEHDSR-------EQIFNELAVLRKETRRLQLSMRRYTGED 113
           PF M+QII+R +K  G  +PE ++R       +Q+  EL  +++ET  LQL+++RY G+D
Sbjct: 61  PFSMKQIIDRYVKAKGI-LPEMENRAGPHADNDQVIKELTRMKEETLNLQLNLQRYKGDD 119

Query: 114 LGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEH- 172
           L ++ +++L +LE  L+ S+NKVR RK ELL +Q++NL+R E MLE+EN  MY W+  + 
Sbjct: 120 LSTVRFEELTELEKLLDQSLNKVRARKLELLHEQMENLKRTEFMLEKENQEMYHWLMSNQ 179

Query: 173 ---RAALE--YQQAAMEAKPAEEHHHQVLDHFPFLGDQQPSSVLQLATNSIPHQIHPYHH 227
              +A +E  +QQ  M      E    +++ FPF G+      L L         H Y  
Sbjct: 180 IQRQAEVEHHHQQQVMTELKLVEQQQPLMNEFPFFGEDLHLGTLPLLDT------HSY-R 232

Query: 228 LQLAQPNLQDP 238
           LQ  QPNLQDP
Sbjct: 233 LQPTQPNLQDP 243

Probable transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q8VWM8|M17_MAIZE MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1

 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 116/250 (46%), Positives = 159/250 (63%), Gaps = 17/250 (6%)

Query: 1   MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           MGRGKI IKRIEN T RQVTFSKRR GLLKK +EL+VLCDA++G++IFSSTGK+ +YC+ 
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60

Query: 61  PFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYD 120
              + ++IE+    T +   E +  +QI  E+  ++ E  +L+  +RRYTG+DL S+  D
Sbjct: 61  ACSLRELIEQYQHATNSHFEEINHDQQILLEMTRMKNEMEKLETGIRRYTGDDLSSLTLD 120

Query: 121 DLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEH-RAALEYQ 179
           D+  LE +LE SV+KVR RK++LL QQLDNLRRKE++LE++N+ +YR I E+ +AAL  +
Sbjct: 121 DVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQNTFLYRMINENQQAALTGE 180

Query: 180 Q--------AAMEAKPAEEHHHQVLDHFPFLGDQQPSSVLQLATNSIPHQIHP---YHHL 228
                    A ++  PA  H         + G +  SS   L   S   Q+H       L
Sbjct: 181 VKLGEMAPLAMLQPPPAFAHSATA-----YYGGESSSSGTALQLMSAAPQLHADDLGFRL 235

Query: 229 QLAQPNLQDP 238
           Q  QPNLQDP
Sbjct: 236 QPTQPNLQDP 245

Probable transcription factor.

Zea mays (taxid: 4577)

>sp|Q6H711|MAD29_ORYSJ MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1

 Score =  204 bits (518), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 116/247 (46%), Positives = 159/247 (64%), Gaps = 11/247 (4%)

Query: 1   MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           MGRGKI IKRIEN T RQVTFSKRR GLLKK +EL+VLCDA++G++IFSSTGK+ +YC+ 
Sbjct: 1   MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60

Query: 61  PFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYD 120
              + ++IE    VT T   E +  +QIF E+  +R E  +L   +RR+TG+DL ++   
Sbjct: 61  TCSLRELIEHYQTVTNTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLA 120

Query: 121 DLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQE--HRAALEY 178
           D++ LE +LE SV KVR RK++LL QQLDNLRRKE +LE++NS + R I E  H+AA+  
Sbjct: 121 DINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQNSFLCRMINENHHQAAVGG 180

Query: 179 Q--QAAMEAKPAEEHHHQVLDHFP-FLGDQQPSSVLQLA--TNSIPHQIHPYHHLQLAQP 233
              +A +E  P       +L   P + G++  S+ LQL    +++         LQ  QP
Sbjct: 181 GDVKAMVEMAPV----LSMLTAAPAYYGEESSSTALQLTPPLHAVDAAAAAGFRLQPTQP 236

Query: 234 NLQDPNV 240
           NLQDP  
Sbjct: 237 NLQDPGC 243

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XGJ4|GGM13_GNEGN MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1

 Score =  203 bits (516), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 117/245 (47%), Positives = 161/245 (65%), Gaps = 22/245 (8%)

Query: 1   MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           MGRGKI IKRIEN T RQVTFSKRR GLLKK HELSVLCDA++GLIIFSS+GKL +Y + 
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSA 60

Query: 61  PFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYD 120
              M++IIER  KV+G RI E+D+ + ++ E+  ++ E  +LQ ++RR  GEDL S+   
Sbjct: 61  SSSMKKIIERYQKVSGARITEYDN-QHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMT 119

Query: 121 DLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAALEYQQ 180
           +L  L  +LES+ ++VR RKN+L+ QQL+NLRRKER+LE++NS++ R + E +AA+E  Q
Sbjct: 120 ELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLCRLLAEQQAAVEGVQ 179

Query: 181 AAMEAKPAEEHHHQVLDHFPFLGDQQPSSVLQLATNSIPHQIHPYHH-----LQLAQPNL 235
             +            L+   F     P +    A N+ P  +H  HH     LQ  QPNL
Sbjct: 180 EPL------------LEFGVFCPP--PDNKTAAAANAGP--LHLGHHLPAFRLQPTQPNL 223

Query: 236 QDPNV 240
           Q+ ++
Sbjct: 224 QESSI 228

Probable transcription factor.

Gnetum gnemon (taxid: 3382)

>sp|Q9LLA7|AP32_ASAEU MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1

 Score =  171 bits (432), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 106/219 (48%), Positives = 147/219 (67%), Gaps = 20/219 (9%)

Query: 26  AGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIPEHDSR 85
            GLLKK  EL++LCDAQ+G+IIFSS+GK+ ++ + P  M +II+R  K++G   P +D+ 
Sbjct: 1   GGLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQKLSGNCAPVYDN- 59

Query: 86  EQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQ 145
           +Q++ E+  ++ E  +LQ +MR + GEDL S+  +++ QLE +LE SVNKVR RK +LLQ
Sbjct: 60  QQVYCEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQ 119

Query: 146 QQLDNLRRKERMLEEENSNMYRWIQEHRAALEYQQAAMEAKPAEEHHHQVLDHFPFL--G 203
           QQLDNLRRKE MLEE+N  +YR IQ+H A      A+ME K  +     +LDHF      
Sbjct: 120 QQLDNLRRKENMLEEQNRELYRVIQDHHA------ASMEQKMVDP---SMLDHFGVFYQD 170

Query: 204 DQQP--SSVLQLATNSIPHQIHPYHHLQLAQPNLQDPNV 240
           D Q   SS+LQL+      Q+HP+  LQ AQPNLQD N+
Sbjct: 171 DHQAARSSMLQLSP-----QLHPF-RLQPAQPNLQDANL 203

Probable transcription factor.

Asarum europaeum (taxid: 49456)

>sp|Q84NC2|MAD31_ORYSJ MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1

 Score =  155 bits (393), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 72/140 (51%), Positives = 102/140 (72%)

Query: 1   MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           MGRG++ +K+IENPT RQVTFSKRR GLLKK +EL++LCDAQIG+I+FS TGK+ +Y + 
Sbjct: 1   MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSP 60

Query: 61  PFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYD 120
           P+R+  I +R LK   TR  E D +++I  E+  ++ E  RL++ MR+Y G+DL S+   
Sbjct: 61  PWRIANIFDRYLKAPSTRFEEMDVQQRIIQEMTRMKDENNRLRIIMRQYMGDDLASLTLQ 120

Query: 121 DLDQLEHELESSVNKVRDRK 140
           D+  LE ++E S+ KVR RK
Sbjct: 121 DVSNLEQQIEFSLYKVRLRK 140

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q655V4|MAD30_ORYSJ MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1

 Score =  155 bits (391), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 82/172 (47%), Positives = 121/172 (70%), Gaps = 3/172 (1%)

Query: 1   MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           MG+GKI +KRIE+ T RQVTFSKRRAG LKK +EL+VLCDAQ+G+++FS  GKL  +C+ 
Sbjct: 1   MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSP 60

Query: 61  PFRMEQIIER-RLKVTGTRIPEHD-SREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIP 118
           P  + ++  R  +    TR+ E +   EQ+  E+  LR E  +L+ S+RR TGEDL S+ 
Sbjct: 61  PVILMELFHRYEITTRNTRLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVS 120

Query: 119 -YDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169
             D+L QL+ +LESS++KV  RK+EL+ QQL+++RR  + + E+N+ + R +
Sbjct: 121 TVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQNNFLCRMV 172

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q39371|3AP1_BRAOL Floral homeotic protein APETALA 1 OS=Brassica oleracea GN=AP1 PE=2 SV=1

 Score =  147 bits (370), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 78/184 (42%), Positives = 118/184 (64%), Gaps = 5/184 (2%)

Query: 1   MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           MGRG++ +KRIEN   RQVTFSKRRAGL KK HE+SVLCDA++ L++FS  GKL +Y T+
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRAGLFKKAHEISVLCDAEVALVVFSHKGKLFEYSTD 60

Query: 61  PFRMEQIIERRLKVTGTR----IPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGS 116
           P  ME+I+ER  + +        PE D       E   L+ +   L+ + R Y GEDL +
Sbjct: 61  PC-MEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQA 119

Query: 117 IPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAAL 176
           +   +L  LE +L++++  +R RKN+L+ + ++ L+RKE+ ++E+NS + + I+E    L
Sbjct: 120 MSPKELQNLEQQLDTALKHIRSRKNQLMYESINELQRKEKAIQEQNSMLSKQIKERENVL 179

Query: 177 EYQQ 180
             QQ
Sbjct: 180 RAQQ 183

Transcription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins.

Brassica oleracea (taxid: 3712)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
255545285	233	mads box protein, putative [Ricinus comm	0.970	1.0	0.825	1e-102
359484091	236	PREDICTED: protein TRANSPARENT TESTA 16-	0.983	1.0	0.766	2e-93
296085309	218	unnamed protein product [Vitis vinifera]	0.837	0.922	0.797	5e-81
224096530	170	predicted protein [Populus trichocarpa]	0.704	0.994	0.834	3e-77
164507101	242	MADS-box DNA-binding domain transcriptio	0.979	0.971	0.601	3e-76
225423656	285	PREDICTED: MADS-box protein FBP24-like [	0.966	0.814	0.631	2e-74
317141579	240	MADS DNA domain binding transcription fa	0.979	0.979	0.602	1e-73
164507099	240	MADS-box DNA-binding domain transcriptio	0.979	0.979	0.598	2e-73
297737989	256	unnamed protein product [Vitis vinifera]	0.966	0.906	0.621	3e-73
357967099	238	transparent TESTA16 protein [Brassica na	0.979	0.987	0.599	6e-73

>gi|255545285|ref|XP_002513703.1| mads box protein, putative [Ricinus communis] gi|223547154|gb|EEF48650.1| mads box protein, putative [Ricinus communis]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/240 (82%), Positives = 211/240 (87%), Gaps = 7/240 (2%)

Query: 1   MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           MGRGKI IKRIEN TTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGK+CQYCTE
Sbjct: 1   MGRGKIPIKRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKMCQYCTE 60

Query: 61  PFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYD 120
           P RMEQIIER  K+TGT IPEHDSREQ+F ELA+LRKETRRLQL+MRRYTGED+ SIP++
Sbjct: 61  PLRMEQIIERYQKITGTCIPEHDSREQLFGELAMLRKETRRLQLNMRRYTGEDMSSIPFE 120

Query: 121 DLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAALEYQQ 180
           +L +LE ELE SV KVRDRKNELLQQQLDNLRRKERMLEEEN NMYRWIQEHRAALEYQQ
Sbjct: 121 ELGELEQELERSVAKVRDRKNELLQQQLDNLRRKERMLEEENGNMYRWIQEHRAALEYQQ 180

Query: 181 AAMEAKPAEEHHHQVLDHFPFLGDQQPSSVLQLATNSIPHQIHPYHHLQLAQPNLQDPNV 240
           A MEAKP E  H QVLD FPF G+  P+SVLQLAT  IP QIHPY HLQLAQPNLQ  + 
Sbjct: 181 ATMEAKPVE--HQQVLDQFPFCGE--PNSVLQLAT--IPSQIHPY-HLQLAQPNLQGSSA 233

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484091|ref|XP_002271905.2| PREDICTED: protein TRANSPARENT TESTA 16-like [Vitis vinifera]

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 184/240 (76%), Positives = 210/240 (87%), Gaps = 4/240 (1%)

Query: 1   MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           MGRGKIAI+RIEN T+RQVTFSKRRAGLLKKTHELSVLCD QIGLIIFSSTGK+C+YCTE
Sbjct: 1   MGRGKIAIRRIENQTSRQVTFSKRRAGLLKKTHELSVLCDVQIGLIIFSSTGKMCEYCTE 60

Query: 61  PFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYD 120
           P+RM+QIIER  KVTGTRIPEHDSREQI+NEL  +RKET RLQ SMR YTGEDL SIPY+
Sbjct: 61  PWRMDQIIERYQKVTGTRIPEHDSREQIYNELTRMRKETSRLQRSMRGYTGEDLSSIPYE 120

Query: 121 DLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAALEYQQ 180
           DLDQLE +LE S +KVR RKN+LLQQQLDNLRRKE+MLEEENS MY WI+E+RAAL+YQQ
Sbjct: 121 DLDQLEQQLEHSADKVRARKNQLLQQQLDNLRRKEQMLEEENSKMYHWIKENRAALDYQQ 180

Query: 181 AAMEAKPAEEHHHQVLDHFPFLGDQQPSSVLQLATNSIPHQIHPYHHLQLAQPNLQDPNV 240
           AA+E KP  EHHHQ+LD FPF G++ P+SVLQL+T  I  Q+HPY  LQL QP+LQD ++
Sbjct: 181 AAIEVKPV-EHHHQMLDQFPFFGEEGPNSVLQLST--IHPQLHPY-GLQLTQPHLQDSSI 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085309|emb|CBI29041.3| unnamed protein product [Vitis vinifera]

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 161/202 (79%), Positives = 179/202 (88%), Gaps = 1/202 (0%)

Query: 1   MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           MGRGKIAI+RIEN T+RQVTFSKRRAGLLKKTHELSVLCD QIGLIIFSSTGK+C+YCTE
Sbjct: 1   MGRGKIAIRRIENQTSRQVTFSKRRAGLLKKTHELSVLCDVQIGLIIFSSTGKMCEYCTE 60

Query: 61  PFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYD 120
           P+RM+QIIER  KVTGTRIPEHDSREQI+NEL  +RKET RLQ SMR YTGEDL SIPY+
Sbjct: 61  PWRMDQIIERYQKVTGTRIPEHDSREQIYNELTRMRKETSRLQRSMRGYTGEDLSSIPYE 120

Query: 121 DLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAALEYQQ 180
           DLDQLE +LE S +KVR RKN+LLQQQLDNLRRKE+MLEEENS MY WI+E+RAAL+YQQ
Sbjct: 121 DLDQLEQQLEHSADKVRARKNQLLQQQLDNLRRKEQMLEEENSKMYHWIKENRAALDYQQ 180

Query: 181 AAMEAKPAEEHHHQVLDHFPFL 202
           AA+E KP  EHHHQ+LD    L
Sbjct: 181 AAIEVKPV-EHHHQMLDQAETL 201

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096530|ref|XP_002310645.1| predicted protein [Populus trichocarpa] gi|222853548|gb|EEE91095.1| predicted protein [Populus trichocarpa]

 Score =  293 bits (751), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 141/169 (83%), Positives = 155/169 (91%)

Query: 1   MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           MGRGKIAI+RIEN TTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE
Sbjct: 2   MGRGKIAIRRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 61

Query: 61  PFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYD 120
             RMEQ+IER  K++GTRIPEHDSREQ+F ELA+LR ETRRLQ +MRRYTGED  SIP++
Sbjct: 62  GLRMEQLIERYQKMSGTRIPEHDSREQLFGELAMLRNETRRLQSNMRRYTGEDTSSIPFE 121

Query: 121 DLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWI 169
           +LD++E ELE SV KVRDRKNELL QQL+NLRRKERMLEEENSNMYRW+
Sbjct: 122 ELDEVEQELERSVIKVRDRKNELLHQQLENLRRKERMLEEENSNMYRWV 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164507101|gb|ABY59774.1| MADS-box DNA-binding domain transcription factor [Brassica napus] gi|317141590|gb|ADV03947.1| MADS DNA domain binding transcription factor BnaC.TT16a [Brassica napus] gi|317141607|gb|ADV03949.1| MADS DNA domain binding transcription factor BolC.TT16a [Brassica oleracea]

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 148/246 (60%), Positives = 189/246 (76%), Gaps = 11/246 (4%)

Query: 1   MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           MGRGKI IKRIEN T+RQVTFSKRR+GL+KKTHELSVLCDA IGLI+FS+TGKL +YC++
Sbjct: 1   MGRGKIEIKRIENRTSRQVTFSKRRSGLIKKTHELSVLCDAHIGLIVFSATGKLTEYCSD 60

Query: 61  PFRMEQIIERRLKVTGTRIPE-HDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPY 119
           P +M Q+IER L+  G R+P+ +D +E+++ E+ VLR+ET +L+L +R Y G DL SIP 
Sbjct: 61  PSKMPQLIERYLQTNGLRLPDPNDGQEELYQEIEVLRRETCKLELRLRPYHGHDLASIPP 120

Query: 120 DDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAALEYQ 179
            +LD LE +LE SV KVR+RKNELLQQQL+NL RK RMLE++N NMYRW+ EHR A+E+Q
Sbjct: 121 HELDALEQQLEHSVLKVRERKNELLQQQLENLSRKRRMLEDDNKNMYRWLHEHRTAMEFQ 180

Query: 180 QAAMEAKPAEEHHHQVLDHFPFLGDQQ------PSSVLQLATNSIPHQIHPYHHLQLAQP 233
           QA +E KP E  + Q L+   +  D        P+SVLQLAT  +P +I P +HLQLAQP
Sbjct: 181 QAGIETKPGE--YQQFLEQVQYYNDHHQQQQQQPNSVLQLAT--LPSEIDPNYHLQLAQP 236

Query: 234 NLQDPN 239
           NLQ+ N
Sbjct: 237 NLQNDN 242

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423656|ref|XP_002276139.1| PREDICTED: MADS-box protein FBP24-like [Vitis vinifera]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 151/239 (63%), Positives = 183/239 (76%), Gaps = 7/239 (2%)

Query: 1   MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           MGRGKIAI+RIEN T RQVTFSKRR GL KK HELSVLCDAQIGLIIFSSTGKL +YC+ 
Sbjct: 1   MGRGKIAIRRIENNTNRQVTFSKRRGGLFKKAHELSVLCDAQIGLIIFSSTGKLSEYCSL 60

Query: 61  PFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYD 120
           P  MEQII R  +VTGT I + D+REQ+ NE+  +R ET  LQLS++RYTG+DL SI + 
Sbjct: 61  PSSMEQIIRRYQRVTGTHISKQDNREQLHNEITRMRNETHNLQLSLQRYTGDDLSSIQFK 120

Query: 121 DLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHR--AALEY 178
           DL++LE +LE S+ KVR RK +LLQQQ+DNL+RK +MLE+EN  +  WIQE +  AA+E 
Sbjct: 121 DLEELEQQLEHSIKKVRARKYQLLQQQIDNLQRKAKMLEDENEQICHWIQEKQQVAAMEQ 180

Query: 179 QQAAMEAKPAEEHHHQVLDHFPFLGDQQPSSVLQLATNSIPHQIHPYHHLQLAQPNLQD 237
           QQ  +E KP EE   QV++ FPF G++QP+SVLQLAT S PH  +PY  LQ   PNLQD
Sbjct: 181 QQLGIELKPVEE--QQVMEQFPFSGEEQPNSVLQLATLS-PH-FYPY-RLQPTHPNLQD 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317141579|gb|ADV03946.1| MADS DNA domain binding transcription factor BnaA.TT16a [Brassica napus] gi|317141633|gb|ADV03950.1| MADS DNA domain binding transcription factor BraA.TT16a [Brassica rapa]

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 147/244 (60%), Positives = 187/244 (76%), Gaps = 9/244 (3%)

Query: 1   MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           MGRGKI IKRIEN T+RQVTFSKRR+GL+KKTHELSVLCDA IGLI+FS+TGKL +YC++
Sbjct: 1   MGRGKIEIKRIENRTSRQVTFSKRRSGLIKKTHELSVLCDAHIGLIVFSATGKLTEYCSD 60

Query: 61  PFRMEQIIERRLKVTGTRIPE-HDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPY 119
           P +M Q+IER L+  G R+P+ +D +E+++ E+ VLR+ET +L+L  R Y G DL SIP 
Sbjct: 61  PSKMPQLIERYLQTNGLRLPDPNDGQEELYQEIEVLRRETCKLELRQRPYHGHDLASIPP 120

Query: 120 DDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAALEYQ 179
            +LD LE +LE SV KVR+RKNELLQQQL+NL RK RMLE +NSNMYR + EH  A+E+Q
Sbjct: 121 HELDALEQQLEHSVLKVRERKNELLQQQLENLSRKRRMLEVDNSNMYRRLHEHGTAMEFQ 180

Query: 180 QAAMEAKPAEEHHHQVLDHFPFLGDQQ----PSSVLQLATNSIPHQIHPYHHLQLAQPNL 235
           QA +E KP E  + Q L+   +  + Q    P+SVLQLAT  +P +I P +HLQLAQPNL
Sbjct: 181 QAGIETKPGE--YQQFLEQVQYYNEHQQQQPPNSVLQLAT--LPSEIDPNYHLQLAQPNL 236

Query: 236 QDPN 239
           Q+ N
Sbjct: 237 QNDN 240

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|164507099|gb|ABY59773.1| MADS-box DNA-binding domain transcription factor [Brassica napus]

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 146/244 (59%), Positives = 187/244 (76%), Gaps = 9/244 (3%)

Query: 1   MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           MGRGKI IKR+EN T+RQVTFSKRR+GL+KKTHELSVLCDA IGLI+FS+TGKL +YC++
Sbjct: 1   MGRGKIEIKRLENRTSRQVTFSKRRSGLIKKTHELSVLCDAHIGLIVFSATGKLTEYCSD 60

Query: 61  PFRMEQIIERRLKVTGTRIPE-HDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPY 119
           P +M Q+IER L+  G R+P+ +D +E+++ E+ VLR+ET +L+L  R Y G DL SIP 
Sbjct: 61  PSKMPQLIERYLQTNGLRLPDPNDGQEELYQEIEVLRRETCKLELRQRPYHGHDLASIPP 120

Query: 120 DDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAALEYQ 179
            +LD LE +LE SV KVR+RKNELLQQQL+NL RK RMLE +NSNMYR + EH  A+E+Q
Sbjct: 121 HELDALEQQLEHSVLKVRERKNELLQQQLENLSRKRRMLEVDNSNMYRRLHEHGTAMEFQ 180

Query: 180 QAAMEAKPAEEHHHQVLDHFPFLGDQQ----PSSVLQLATNSIPHQIHPYHHLQLAQPNL 235
           QA +E KP E  + Q L+   +  + Q    P+SVLQLAT  +P +I P +HLQLAQPNL
Sbjct: 181 QAGIETKPGE--YQQFLEQVQYYNEHQQQQPPNSVLQLAT--LPSEIDPNYHLQLAQPNL 236

Query: 236 QDPN 239
           Q+ N
Sbjct: 237 QNDN 240

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737989|emb|CBI27190.3| unnamed protein product [Vitis vinifera]

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 151/243 (62%), Positives = 183/243 (75%), Gaps = 11/243 (4%)

Query: 1   MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           MGRGKIAI+RIEN T RQVTFSKRR GL KK HELSVLCDAQIGLIIFSSTGKL +YC+ 
Sbjct: 1   MGRGKIAIRRIENNTNRQVTFSKRRGGLFKKAHELSVLCDAQIGLIIFSSTGKLSEYCSL 60

Query: 61  PFRMEQIIERRLKVTGTRIPEHDSR----EQIFNELAVLRKETRRLQLSMRRYTGEDLGS 116
           P  MEQII R  +VTGT I + D+R    EQ+ NE+  +R ET  LQLS++RYTG+DL S
Sbjct: 61  PSSMEQIIRRYQRVTGTHISKQDNRVGAIEQLHNEITRMRNETHNLQLSLQRYTGDDLSS 120

Query: 117 IPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHR--A 174
           I + DL++LE +LE S+ KVR RK +LLQQQ+DNL+RK +MLE+EN  +  WIQE +  A
Sbjct: 121 IQFKDLEELEQQLEHSIKKVRARKYQLLQQQIDNLQRKAKMLEDENEQICHWIQEKQQVA 180

Query: 175 ALEYQQAAMEAKPAEEHHHQVLDHFPFLGDQQPSSVLQLATNSIPHQIHPYHHLQLAQPN 234
           A+E QQ  +E KP EE   QV++ FPF G++QP+SVLQLAT S PH  +PY  LQ   PN
Sbjct: 181 AMEQQQLGIELKPVEE--QQVMEQFPFSGEEQPNSVLQLATLS-PH-FYPY-RLQPTHPN 235

Query: 235 LQD 237
           LQD
Sbjct: 236 LQD 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357967099|gb|AET97614.1| transparent TESTA16 protein [Brassica napus]

 Score =  279 bits (714), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 145/242 (59%), Positives = 183/242 (75%), Gaps = 7/242 (2%)

Query: 1   MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           MGRGKI IK+IEN T RQVTFSKRR+G++KK HELSVLCDA IGLI+FS+TGKL Q+CTE
Sbjct: 1   MGRGKIEIKKIENRTARQVTFSKRRSGVIKKAHELSVLCDAHIGLIVFSATGKLYQHCTE 60

Query: 61  PFRMEQIIERRLKVTGTRIPE-HDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPY 119
           P  M Q+I+R L+  G R+P+ +D+RE+  +E+ VLR+ET +L+L  R Y G DL SIP 
Sbjct: 61  PLTMPQLIDRYLQTNGLRLPDPNDNREEFCHEIEVLRRETCKLELRQRIYRGHDLASIPP 120

Query: 120 DDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAALEYQ 179
            +LD+LE +LE SV K+R RKNEL+QQQL+NL RK RMLEE+N+NMYRW+  HRA  E+Q
Sbjct: 121 HELDELEQQLEHSVLKIRQRKNELMQQQLENLSRKRRMLEEDNNNMYRWLHGHRATTEFQ 180

Query: 180 QAAMEAKPAEEHHHQVLDHFPFLGD--QQPSSVLQLATNSIPHQIHPYHHLQLAQPNLQD 237
           QA +E KP E  + Q L+   F  D  QQP+S LQLAT  +P +I   +HL LAQPNLQ+
Sbjct: 181 QAGIETKPGE--YQQFLEQVQFYNDHQQQPNSFLQLAT--LPSEIDLNYHLHLAQPNLQN 236

Query: 238 PN 239
            N
Sbjct: 237 DN 238

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	240
TAIR|locus:2166766	252	TT16 "TRANSPARENT TESTA16" [Ar	0.983	0.936	0.590	5.5e-70
UNIPROTKB|Q9ATE5	268	FBP24 "MADS-box protein FBP24"	0.866	0.776	0.540	1.2e-58
TAIR|locus:2033273	256	AP1 "AT1G69120" [Arabidopsis t	0.875	0.820	0.386	5.7e-36
TAIR|locus:2028830	255	CAL "CAULIFLOWER" [Arabidopsis	0.762	0.717	0.415	2e-33
UNIPROTKB|D2T2G0	238	gsqua2 "GSQUA2 protein" [Gerbe	0.820	0.827	0.381	2.5e-33
TAIR|locus:2173522	242	AGL8 "AGAMOUS-like 8" [Arabido	0.758	0.752	0.401	2.5e-33
UNIPROTKB|Q9ATF1	245	FBP9 "MADS-box transcription f	0.733	0.718	0.426	3.2e-33
TAIR|locus:2082618	240	AGL16 "AGAMOUS-like 16" [Arabi	0.920	0.920	0.371	3.2e-33
TAIR|locus:2032372	251	SEP3 "SEPALLATA3" [Arabidopsis	0.883	0.844	0.391	5.2e-33
UNIPROTKB|Q10CQ1	246	MADS14 "MADS-box transcription	0.775	0.756	0.403	6.7e-33

TAIR|locus:2166766 TT16 "TRANSPARENT TESTA16" [Arabidopsis thaliana (taxid:3702)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 147/249 (59%), Positives = 188/249 (75%)

Query:     1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
             MGRGKI IK+IEN T RQVTFSKRR GL+KKT ELS+LCDA IGLI+FS+TGKL ++C+E
Sbjct:     1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSE 60

Query:    61 PFRMEQIIERRLKVTGTRIPEH-DSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPY 119
               RM Q+I+R L   G R+P+H D +EQ+ +E+ +LR+ET  L+L +R + G DL SIP 
Sbjct:    61 QNRMPQLIDRYLHTNGLRLPDHHDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPP 120

Query:   120 DDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAALEYQ 179
             ++LD LE +LE SV KVR+RKNEL+QQQL+NL RK RMLEE+N+NMYRW+ EHRAA+E+Q
Sbjct:   121 NELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDNNNMYRWLHEHRAAMEFQ 180

Query:   180 QAAMEAKPAEEHH--HQVLDHFP-----FLGDQQ--PSSVLQLATNSIPHQIHPYHHLQL 230
             QA ++ KP E      Q+  + P     FL  QQ  P+SVLQLAT  +P +I P ++LQL
Sbjct:   181 QAGIDTKPGEYQQFIEQLQCYKPGEYQQFLEQQQQQPNSVLQLAT--LPSEIDPTYNLQL 238

Query:   231 AQPNLQ-DP 238
             AQPNLQ DP
Sbjct:   239 AQPNLQNDP 247

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IMP

GO:2000029 "regulation of proanthocyanidin biosynthetic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048316 "seed development" evidence=IGI;IMP

GO:0048481 "ovule development" evidence=IGI;RCA;IMP

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IGI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

UNIPROTKB|Q9ATE5 FBP24 "MADS-box protein FBP24" [Petunia x hybrida (taxid:4102)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 121/224 (54%), Positives = 165/224 (73%)

Query:     1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
             MGRGKI +KRIEN T+RQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSS GKL +YC++
Sbjct:     4 MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQ 63

Query:    61 PFRMEQIIERRLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYD 120
             P  M QII R L+ TG  +P  D+R Q+++E+A +R++T  LQLS++RY G+DL    Y+
Sbjct:    64 PHSMSQIISRYLQTTGASLPVEDNRVQLYDEVAKMRRDTLNLQLSLQRYKGDDLSLAQYE 123

Query:   121 DLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAALEYQQ 180
             +L++LE +LE ++NK+R RK EL+QQQ++NL++ E+MLE+EN +MY+W+  ++   + + 
Sbjct:   124 ELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENHDMYQWLMNNQM-YKQES 182

Query:   181 AAMEAKPAEEHH-HQ-------------VLDHFPFLGDQ-QPSS 209
             AAM+ +    HH HQ             +L HF F GDQ QPS+
Sbjct:   183 AAMDHEDHHHHHEHQQAITELNLLGEQPLLSHFTFFGDQEQPST 226

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2033273 AP1 "AT1G69120" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 87/225 (38%), Positives = 134/225 (59%)

Query:     1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
             MGRG++ +KRIEN   RQVTFSKRRAGLLKK HE+SVLCDA++ L++FS  GKL +Y T+
Sbjct:     1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTD 60

Query:    61 PFRMEQIIER--RLKVTGTRI--PEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGS 116
                ME+I+ER  R      ++  PE D       E   L+ +   L+ + R Y GEDL +
Sbjct:    61 SC-MEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQA 119

Query:   117 IPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAAL 176
             +   +L  LE +L++++  +R RKN+L+ + ++ L++KE+ ++E+NS + + I+E    L
Sbjct:   120 MSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKEREKIL 179

Query:   177 EYQQAAMEAK--------PAEEHHHQVLDHFPFLGDQQPSSVLQL 213
               QQ   + +        P     HQ+  H P++   QPS  L +
Sbjct:   180 RAQQEQWDQQNQGHNMPPPLPPQQHQI-QH-PYMLSHQPSPFLNM 222

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009933 "meristem structural organization" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IGI;IDA

GO:0009908 "flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010076 "maintenance of floral meristem identity" evidence=IGI

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2028830 CAL "CAULIFLOWER" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 79/190 (41%), Positives = 123/190 (64%)

Query:     1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
             MGRG++ +KRIEN   RQVTFSKRR GLLKK  E+SVLCDA++ LI+FS  GKL +Y +E
Sbjct:     1 MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSE 60

Query:    61 PFRMEQIIER--RLKVTGTRI--PE-HDSREQIFN-ELAVLRKETRRLQLSMRRYTGEDL 114
                ME+++ER  R      ++  P+ H + +  ++ E + L+ +   L+ + R Y GE+L
Sbjct:    61 SC-MEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEEL 119

Query:   115 GSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRA 174
               +   DL  LE +LE+++  +R RKN+L+ + L++L+RKE+ ++EENS + + I+E   
Sbjct:   120 EPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKEREN 179

Query:   175 ALEYQQAAME 184
              L  +Q   E
Sbjct:   180 ILRTKQTQCE 189

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009911 "positive regulation of flower development" evidence=TAS

GO:0010582 "floral meristem determinacy" evidence=IEP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

UNIPROTKB|D2T2G0 gsqua2 "GSQUA2 protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 79/207 (38%), Positives = 127/207 (61%)

Query:     1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
             MGRG++ +KRIEN  +RQVTFSKRR GLLKK HE+SVLCDA + LI+FS+ GKL +Y T 
Sbjct:     1 MGRGRVQLKRIENKISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEYSTH 60

Query:    61 PFRMEQIIERRLKVTGTR----IPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGS 116
                M+ I+ER  + +        PE +++     E + LR +   L+ +++ Y GEDL  
Sbjct:    61 S-SMDAILERYERYSYAEKLLTAPETETQGSWTLESSKLRAKIEVLEKNIKHYVGEDLEP 119

Query:   117 IPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAAL 176
             +   +L  +E ++E+++ +VR RKN+++ + +  L +KER L+E+N+ + + ++ ++   
Sbjct:   120 LNLRELQSVEQQIETALKRVRTRKNQVMHESISELHKKERSLQEQNNTLSKKLKGNQKNT 179

Query:   177 EYQQAAMEAKPAEEHHHQVLDHFPFLG 203
             E Q       P + HH   L H P +G
Sbjct:   180 EQQNVGFMFPP-QPHH---LAH-PAIG 201

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2173522 AGL8 "AGAMOUS-like 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
 Identities = 75/187 (40%), Positives = 119/187 (63%)

Query:     1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
             MGRG++ +KRIEN   RQVTFSKRR+GLLKK HE+SVLCDA++ LI+FSS GKL +Y T+
Sbjct:     1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTD 60

Query:    61 PFRMEQIIER--RLKVTGTRIPEHD--SREQIFNELAVLRKETRRLQLSMRRYTGEDLGS 116
                ME+I+ER  R   +  ++   D    E    E A L+     L+ + R + GEDL S
Sbjct:    61 SC-MERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDS 119

Query:   117 IPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAAL 176
             +   +L  LEH+L++++  +R RKN+ + + +  L++K++ L++ N+++ + I+E     
Sbjct:   120 LSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKKIKEREKKT 179

Query:   177 EYQQAAM 183
               Q+  +
Sbjct:   180 GQQEGQL 186

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009911 "positive regulation of flower development" evidence=TAS

GO:0010077 "maintenance of inflorescence meristem identity" evidence=IGI

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0010154 "fruit development" evidence=IMP

UNIPROTKB|Q9ATF1 FBP9 "MADS-box transcription factor FBP9" [Petunia x hybrida (taxid:4102)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 76/178 (42%), Positives = 115/178 (64%)

Query:     1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
             MGRG++ +KRIEN   RQVTF+KRR GLLKK +ELSVLCDA++ LIIFSS GKL ++C+ 
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCST 60

Query:    61 PFRMEQIIERRLKVTGTRIPEHDSRE--QIFNELAVLRKETRRLQLSMRRYTGEDLGSIP 118
                M+ + + +     +  P   + +    ++E   L+     LQ S R   GEDLGS+ 
Sbjct:    61 SSMMKTLEKYQQCSYASLDPMQSANDTQNNYHEYLRLKARVELLQRSQRNLLGEDLGSLN 120

Query:   119 YDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAAL 176
               +L+QLEH+L+SS+ ++R +K + +  QL +L++KE+ML E N  + R ++E  A +
Sbjct:   121 SKELEQLEHQLDSSLKQIRSKKTQHMLDQLADLQQKEQMLAEANKQLRRKLEESAARI 178

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2082618 AGL16 "AGAMOUS-like 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 85/229 (37%), Positives = 138/229 (60%)

Query:     1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
             MGRGKIAIKRI N T+RQVTFSKRR GLLKK  EL++LCDA++G+IIFSSTG+L  + + 
Sbjct:     1 MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query:    61 PFRMEQIIERRLKVTGTRIPEHDSREQI-F--NELAVLRKETRRLQLSMRRYTGEDLGSI 117
                M+ +IER     G    E+D   +I F   E A+L+++   LQ + R+  GE+L  +
Sbjct:    61 S--MKSVIERYSDAKGETSSENDPASEIQFWQKEAAILKRQLHNLQENHRQMMGEELSGL 118

Query:   118 PYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQ-EHRAAL 176
               + L  LE++LE S+  VR +K+++L +++  L R+  ++ +EN ++++ +   H+  +
Sbjct:   119 SVEALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGNLVHQENLDLHKKVNLMHQQNM 178

Query:   177 EYQQAAMEAKPAE-EHHHQVLDHFPFLGDQQPSSV-LQLATNSIPHQIH 223
             E  +   E +  +  + + +L +   + D     V LQL+     H+ H
Sbjct:   179 ELHEKVSEVEGVKIANKNSLLTNGLDMRDTSNEHVHLQLSQPQHDHETH 227

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0010440 "stomatal lineage progression" evidence=IMP

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2032372 SEP3 "SEPALLATA3" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 87/222 (39%), Positives = 126/222 (56%)

Query:     1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
             MGRG++ +KRIEN   RQVTF+KRR GLLKK +ELSVLCDA++ LIIFS+ GKL ++C+ 
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    61 PFRMEQIIERRLKVT-GTRIPEHDSREQIFNELAV------LRKETRRLQLSMRRYTGED 113
                M + +ER  K   G   P   SRE +  EL+       L++    LQ + R   GED
Sbjct:    61 S-SMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGED 119

Query:   114 LGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNM-YRWIQEH 172
             LG +   +L+ LE +L+SS+ ++R  + + +  QL++L+ KERML E N  +  R    +
Sbjct:   120 LGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGY 179

Query:   173 RAALEYQQAAMEAKPAEEHHHQVLDHFP-FLGDQQPSSVLQL 213
             +  L+      E      HHHQ   H   F    +   +LQ+
Sbjct:   180 QMPLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQI 221

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0001708 "cell fate specification" evidence=RCA;IMP

GO:0010093 "specification of floral organ identity" evidence=RCA;IMP

GO:0009908 "flower development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0048833 "specification of floral organ number" evidence=IMP

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

UNIPROTKB|Q10CQ1 MADS14 "MADS-box transcription factor 14" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 77/191 (40%), Positives = 123/191 (64%)

Query:     1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
             MGRGK+ +KRIEN   RQVTFSKRR+GLLKK +E+SVLCDA++ LIIFS+ GKL +Y T+
Sbjct:     1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATD 60

Query:    61 PFRMEQIIERRLKVT-GTRI---PEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGS 116
                M++I+ER  + +   ++    E D++    +E   L+ +   +Q   +   GEDL S
Sbjct:    61 SC-MDKILERYERYSYAEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLES 119

Query:   117 IPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQEHRAAL 176
             +   +L QLE +LE+S+  +R RK++L+ + ++ L+RKE+ L+EEN  + + + E +   
Sbjct:   120 LNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQKVQ 179

Query:   177 EYQQAAMEAKP 187
             + Q    + +P
Sbjct:   180 KQQVQWDQTQP 190

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6H711	MAD29_ORYSJ	No assigned EC number	0.4696	0.9833	0.9076	yes	no
Q9ATE5	FBP24_PETHY	No assigned EC number	0.5190	0.9875	0.8843	N/A	no
Q8RYD9	TT16_ARATH	No assigned EC number	0.5612	0.9833	0.9365	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	240
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	1e-40
smart00432	59	smart00432, MADS, MADS domain	3e-33
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	2e-31
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	9e-26
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	8e-22
pfam01486	100	pfam01486, K-box, K-box region	5e-18
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	1e-07

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  133 bits (338), Expect = 1e-40
 Identities = 52/75 (69%), Positives = 60/75 (80%), Gaps = 2/75 (2%)

Query: 2  GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEP 61
          GRGKI IKRIEN T RQVTFSKRR GLLKK HELSVLCDA++ LIIFSS+GKL ++ +  
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS 60

Query: 62 FRMEQIIERRLKVTG 76
            ME+IIER  K +G
Sbjct: 61 --MEKIIERYQKTSG 73

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  114 bits (288), Expect = 3e-33
 Identities = 41/58 (70%), Positives = 47/58 (81%)

Query: 2  GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCT 59
          GR KI IKRIEN T RQVTFSKRR GL KK HELSVLCDA++ LI+FS TGKL ++ +
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS 58

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score =  109 bits (275), Expect = 2e-31
 Identities = 39/59 (66%), Positives = 48/59 (81%)

Query: 2  GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
          GRGKI IKRIEN T+RQVTFSKRR GL KK  ELSVLCDA++ +I+FS +GKL ++ + 
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 95.8 bits (239), Expect = 9e-26
 Identities = 37/82 (45%), Positives = 47/82 (57%), Gaps = 8/82 (9%)

Query: 2  GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEP 61
          GR KI IKRIEN   R VTFSKRR GL KK  ELS LC A++ +I++S +GKL  +    
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 62 --------FRMEQIIERRLKVT 75
                  F +   +ER+ K  
Sbjct: 61 EVEGVISRFEVLSALERKKKAV 82

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 84.7 bits (210), Expect = 8e-22
 Identities = 36/51 (70%), Positives = 43/51 (84%)

Query: 9  KRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCT 59
          KRIEN + RQVTFSKRR G+ KK HELSVLCDA++ +IIFSSTGKL +Y +
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 76.0 bits (188), Expect = 5e-18
 Identities = 37/82 (45%), Positives = 54/82 (65%)

Query: 90  NELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLD 149
            E A L+K+   LQ   R   GEDLGS+   +L QLE +LE+ +  +R RKNELL  Q++
Sbjct: 19  QEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLENGLKHIRSRKNELLLNQIE 78

Query: 150 NLRRKERMLEEENSNMYRWIQE 171
            L++KER L+EEN N+ + ++E
Sbjct: 79  ELQKKERELQEENRNLRQKLEE 100

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 25/62 (40%), Positives = 34/62 (54%)

Query: 1   MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           +   KI I  I N T R VTFSKR+ G+ KK  ELSVL   ++ L++ S  G +  + T 
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Query: 61  PF 62
             
Sbjct: 141 KL 142

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	240
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	100.0
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.97
smart00432	59	MADS MADS domain.	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.95
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.92
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.85
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.78
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.43
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	91.38
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	86.78
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	84.05
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	80.3
KOG4797	123	consensus Transcriptional regulator [Transcription	80.25

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=3.9e-39  Score=271.40  Aligned_cols=158  Identities=42%  Similarity=0.630  Sum_probs=128.2

Q ss_pred             CCccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhccCCCCC
Q 036652            1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIP   80 (240)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~~~~~   80 (240)
                      |||+||+|+||+|.++|||||||||.||||||+||||||||+||||||||+|++|+|||++.++..|++||...+.....
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999976799999999987654322


Q ss_pred             C--CCchHH----------------------HHHHHHHHHHHHHHHHH---hhhccCCCCCCCCCH-HHHHHHHHHHHHH
Q 036652           81 E--HDSREQ----------------------IFNELAVLRKETRRLQL---SMRRYTGEDLGSIPY-DDLDQLEHELESS  132 (240)
Q Consensus        81 ~--~~~~e~----------------------l~~el~kLk~e~~~Lq~---~~R~~~GedL~~Ls~-~EL~~LE~~Le~~  132 (240)
                      .  .....+                      .......++...+.+..   ..+++.|++|.+++. .+|..++..|+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            1  111111                      22333445555555553   378899999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 036652          133 VNKVRDRKNELLQQQLD-NLRRKERML  158 (240)
Q Consensus       133 L~~VR~rK~~ll~~qi~-~lkkk~~~l  158 (240)
                      +..+|..+...+..++. .++.+...+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (195)
T KOG0014|consen  161 LHNSRSSKSKPLSDSNFQVLQEKEKSL  187 (195)
T ss_pred             hcCCCCCCCcCCcchhhhhhcccchhc
Confidence            99999999988877765 444444333

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=100.00  E-value=3.8e-34  Score=207.75  Aligned_cols=77  Identities=68%  Similarity=1.014  Sum_probs=74.5

Q ss_pred             CccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhccCCCCC
Q 036652            2 GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTRIP   80 (240)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~~~~~   80 (240)
                      ||+||+|++|||..+|+|||+|||.||||||.||||||||+||||||||+|++|+|++|+  +++||+||++.++.++|
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s--~~~vl~ry~~~~~~~~~   77 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS--MEKIIERYQKTSGSSLW   77 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCC--HHHHHHHHHhccccccC
Confidence            899999999999999999999999999999999999999999999999999999999984  79999999999998877

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=4.1e-31  Score=194.53  Aligned_cols=76  Identities=47%  Similarity=0.731  Sum_probs=72.5

Q ss_pred             CccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhccCCC
Q 036652            2 GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTR   78 (240)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~~~   78 (240)
                      ||+||+|++|+|..+|+|||+|||.||||||+||||||||+||+|||||+|+.++||+++. +..++++|...+...
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~-~~~~l~~~~~~~~~~   76 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE-VEGVISRFEVLSALE   76 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHH-HHHHHHHHhhcCHhh
Confidence            8999999999999999999999999999999999999999999999999999999999865 999999999887654

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.96  E-value=1.5e-30  Score=178.91  Aligned_cols=59  Identities=69%  Similarity=1.069  Sum_probs=58.2

Q ss_pred             CccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCC
Q 036652            2 GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE   60 (240)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~   60 (240)
                      ||+||+|++|+|..+|++||+|||.||+|||.||||||||+||+|||||+|+++.||+|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999986

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.95  E-value=1.2e-29  Score=174.64  Aligned_cols=59  Identities=66%  Similarity=1.060  Sum_probs=58.0

Q ss_pred             CccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCC
Q 036652            2 GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE   60 (240)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~   60 (240)
                      ||+||+|++|+|...|++||+|||.||+|||.||||||||+||+|||||+|++++||+|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            89999999999999999999999999999999999999999999999999999999985

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.92  E-value=2.8e-27  Score=157.77  Aligned_cols=51  Identities=55%  Similarity=0.904  Sum_probs=46.9

Q ss_pred             eEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCC
Q 036652            9 KRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCT   59 (240)
Q Consensus         9 k~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s   59 (240)
                      |+|+|++.|++||+|||.||||||.|||+||||+||||||||+|+++.|+|
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999986

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.85  E-value=5.5e-21  Score=145.42  Aligned_cols=99  Identities=42%  Similarity=0.658  Sum_probs=95.7

Q ss_pred             HhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652           71 RLKVTGTRIPEHDSREQIFNELAVLRKETRRLQLSMRRYTGEDLGSIPYDDLDQLEHELESSVNKVRDRKNELLQQQLDN  150 (240)
Q Consensus        71 Y~~~~~~~~~~~~~~e~l~~el~kLk~e~~~Lq~~~R~~~GedL~~Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~  150 (240)
                      |++.++.+.|+ .+++.++.++.+|+.+++.|+..+|+++|+||++||++||..||++|+.+|.+||+||.++|.++|+.
T Consensus         1 Y~~~~~~~~~~-~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~   79 (100)
T PF01486_consen    1 YQKQSGTDLWD-SQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEE   79 (100)
T ss_pred             CCcccCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            78888999998 78999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 036652          151 LRRKERMLEEENSNMYRWIQ  170 (240)
Q Consensus       151 lkkk~~~l~een~~L~~~l~  170 (240)
                      +++|++.|.++|..|+.++.
T Consensus        80 l~~ke~~l~~en~~L~~~~~   99 (100)
T PF01486_consen   80 LKKKERELEEENNQLRQKIE   99 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999998874

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.78  E-value=1e-19  Score=158.88  Aligned_cols=77  Identities=39%  Similarity=0.527  Sum_probs=70.3

Q ss_pred             CccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCc-------hhHHHHHHHHhhc
Q 036652            2 GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEP-------FRMEQIIERRLKV   74 (240)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~-------~s~~~il~RY~~~   74 (240)
                      ||+||+|++|||+..|.|||||||.||||||.|||||.|++|-|+|.|.+|.+|.|+.|.       .+-+.+|.-..+.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~  142 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA  142 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence            799999999999999999999999999999999999999999999999999999999883       2347888888887


Q ss_pred             cCCC
Q 036652           75 TGTR   78 (240)
Q Consensus        75 ~~~~   78 (240)
                      ++..
T Consensus       143 pd~~  146 (338)
T KOG0015|consen  143 PDTP  146 (338)
T ss_pred             CCCC
Confidence            7654

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.43  E-value=5.3e-14  Score=128.27  Aligned_cols=61  Identities=41%  Similarity=0.568  Sum_probs=59.7

Q ss_pred             CCccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCc
Q 036652            1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEP   61 (240)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~   61 (240)
                      |||+||.|..|+|+.+|.|||+||+.||+|||.||+||.+.+|.|+|.|.+|+++.|++|.
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~  141 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPK  141 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCc
Confidence            7899999999999999999999999999999999999999999999999999999999984

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=91.38  E-value=2.8  Score=29.85  Aligned_cols=50  Identities=26%  Similarity=0.409  Sum_probs=36.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652          117 IPYDDLDQLEHELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYRWIQE  171 (240)
Q Consensus       117 Ls~~EL~~LE~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~~l~~  171 (240)
                      ++++.|..||..+..++..|..     |..+++.|+.+...|.++|..|..+...
T Consensus         1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en~~   50 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEENEQ   50 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4788999999999999998875     4445577888766666666666665543

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=86.78  E-value=1.2  Score=30.49  Aligned_cols=32  Identities=22%  Similarity=0.393  Sum_probs=26.3

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 036652          108 RYTGEDLGSIPYDDLDQLEHELESSVNKVRDR  139 (240)
Q Consensus       108 ~~~GedL~~Ls~~EL~~LE~~Le~~L~~VR~r  139 (240)
                      +..|+||+.||++||..-...|+.=+.++++-
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~   43 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEAA   43 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            56799999999999998888887777766653

The function of this family is unknown.

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=84.05  E-value=1.7  Score=33.41  Aligned_cols=23  Identities=35%  Similarity=0.372  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 036652          149 DNLRRKERMLEEENSNMYRWIQE  171 (240)
Q Consensus       149 ~~lkkk~~~l~een~~L~~~l~~  171 (240)
                      ..+|+|.+.|+|||+.|+.+++-
T Consensus        75 ~rlkkk~~~LeEENNlLklKiev   97 (108)
T cd07429          75 LRLKKKNQQLEEENNLLKLKIEV   97 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            56888999999999999988854

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=80.30  E-value=4.3  Score=27.66  Aligned_cols=25  Identities=36%  Similarity=0.575  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652          142 ELLQQQLDNLRRKERMLEEENSNMY  166 (240)
Q Consensus       142 ~ll~~qi~~lkkk~~~l~een~~L~  166 (240)
                      +++.++|..|..+...|+.||..|+
T Consensus        17 evLK~~I~eL~~~n~~Le~EN~~Lk   41 (59)
T PF01166_consen   17 EVLKEQIAELEERNSQLEEENNLLK   41 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666666677777777776664

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>KOG4797 consensus Transcriptional regulator [Transcription]

Probab=80.25  E-value=8.6  Score=29.57  Aligned_cols=41  Identities=24%  Similarity=0.398  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 036652          127 HELESSVNKVRDRKNELLQQQLDNLRRKERMLEEENSNMYR  167 (240)
Q Consensus       127 ~~Le~~L~~VR~rK~~ll~~qi~~lkkk~~~l~een~~L~~  167 (240)
                      ..++.++.-|+..-+-...++++.||.+++.|++.|..|..
T Consensus        48 NKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~   88 (123)
T KOG4797|consen   48 NKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALER   88 (123)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555555555666666666666666655543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	240
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		1e-14
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		2e-14
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		3e-14
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		3e-14
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		2e-13
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		2e-13
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		2e-09
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		6e-07
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		8e-07

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 2  GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEP 61
          GR KI I RI +   RQVTF+KR+ GL+KK +ELSVLCD +I LIIF+S+ KL QY +  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 62 FRMEQIIERRLKVTGTRIPEHDSR 85
            M++++   LK T    P H+SR
Sbjct: 61 --MDKVL---LKYTEYNEP-HESR 78

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 57/84 (67%), Gaps = 6/84 (7%)
Query: 2  GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEP 61
          GR KI I RI +   RQVTF+KR+ GL+KK +ELSVL DA+I LIIF+S+ KL QY +  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTD 60
Query: 62 FRMEQIIERRLKVTGTRIPEHDSR 85
            M++++   LK T    P H+SR
Sbjct: 61 --MDKVL---LKYTEYNEP-HESR 78

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 44/58 (75%)
Query: 2  GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCT 59
          GR KI I RI +   RQVTF+KR+ GL+KK +ELSVLCD +I LIIF+S+ KL QY +
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS 58

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/85 (50%), Positives = 57/85 (67%), Gaps = 6/85 (7%)
Query: 1  MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
          MGR KI I RI +   RQVTF+KR+ GL+KK +ELSVLCD +I LIIF+S  +L QY + 
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
Query: 61 PFRMEQIIERRLKVTGTRIPEHDSR 85
             M++++   LK T    P H+SR
Sbjct: 61 D--MDRVL---LKYTEYSEP-HESR 79

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 44/58 (75%)
Query: 2  GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCT 59
          GR KI I RI +   RQVTF+KR+ GL+KK +ELSVLCD +I LIIF+S+ KL QY +
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS 58

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 6/84 (7%)
Query: 2  GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEP 61
          GR KI I RI +   RQVTF+KR+ GL+KK +ELSVLCD +I LIIF+S  +L QY +  
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD 60
Query: 62 FRMEQIIERRLKVTGTRIPEHDSR 85
            M++++   LK T    P H+SR
Sbjct: 61 --MDRVL---LKYTEYSEP-HESR 78

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 39/60 (65%)
Query: 3  RGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPF 62
          R KI IK IEN T R VTFSKR+ G++KK  ELSVL   Q+ L++ S TG +  + T  F
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKF 77

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 2  GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCT 59
          GR KI ++ I+N   R  TFSKR+ G++KK +ELS L   Q+ L++ S TG +  + T
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 67

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 2  GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCT 59
          GR KI ++ I+N   R  TFSKR+ G++KK +ELS L   Q+ L++ S TG +  + T
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	240
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	2e-36
1egw_A	77	MADS box transcription enhancer factor 2, polypept	3e-36
1hbx_A	92	SRF, serum response factor; gene regulation, trans	5e-36
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	1e-35
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	8e-35

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  122 bits (309), Expect = 2e-36
 Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)

Query: 2  GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEP 61
          GR KI I RI +   RQVTF+KR+ GL+KK +ELSVLCD +I LIIF+S+ KL QY +  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59

Query: 62 FRMEQIIERRLKVTGT 77
            M++++ +  +    
Sbjct: 60 -DMDKVLLKYTEYNEP 74

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  122 bits (307), Expect = 3e-36
 Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)

Query: 2  GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEP 61
          GR KI I RI +   RQVTF+KR+ GL+KK +ELSVLCD +I LIIF+S+ KL QY +  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59

Query: 62 FRMEQIIERRLKVTGT 77
            M++++ +  +    
Sbjct: 60 -DMDKVLLKYTEYNEP 74

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  122 bits (307), Expect = 5e-36
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 1  MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           GR KI ++ I+N   R  TFSKR+ G++KK +ELS L   Q+ L++ S TG +  + T 
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69

Query: 61 PFRMEQIIER 70
            +++ +I  
Sbjct: 70 --KLQPMITS 77

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  121 bits (305), Expect = 1e-35
 Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 1  MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
            R KI IK IEN T R VTFSKR+ G++KK  ELSVL   Q+ L++ S TG +  + T 
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

Query: 61 PFRMEQIIER 70
            + E I+ +
Sbjct: 76 --KFEPIVTQ 83

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  119 bits (299), Expect = 8e-35
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 1  MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           GR KI ++ I+N   R  TFSKR+ G++KK +ELS L   Q+ L++ S TG +  + T 
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68

Query: 61 PFRMEQIIER 70
            +++ +I  
Sbjct: 69 --KLQPMITS 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	240
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=7.6e-39  Score=230.30  Aligned_cols=73  Identities=49%  Similarity=0.785  Sum_probs=69.3

Q ss_pred             CccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhccC
Q 036652            2 GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTG   76 (240)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~   76 (240)
                      ||+||+|++|||.++|||||||||+||||||+||||||||+||||||||+||+|+|+|+  +|++||+||+..++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~--~~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST--DMDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESS--CHHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCC--CHHHHHHHHHhccC
Confidence            89999999999999999999999999999999999999999999999999999999986  69999999998764

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=4e-38  Score=232.07  Aligned_cols=75  Identities=48%  Similarity=0.767  Sum_probs=71.8

Q ss_pred             CccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhccCCC
Q 036652            2 GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKVTGTR   78 (240)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~~~~~   78 (240)
                      ||+||+|++|||.++|||||||||+||||||+||||||||+||||||||+|++|+|+||  +|+.||+||+..++..
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~--~~~~il~rY~~~~~~~   75 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST--DMDKVLLKYTEYNEPH   75 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESS--CHHHHHHHHHHCCSCC
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCC--CHHHHHHHHHhcCccc
Confidence            89999999999999999999999999999999999999999999999999999999986  6999999999987653

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=1.3e-36  Score=227.60  Aligned_cols=71  Identities=45%  Similarity=0.640  Sum_probs=68.0

Q ss_pred             CCccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhh
Q 036652            1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLK   73 (240)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~   73 (240)
                      |||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+||+|+|+||  ++..||++|..
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sp--s~~~il~r~~G   86 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP--KFEPIVTQQEG   86 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECT--TTTHHHHSHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCC--CHHHHHHHhhC
Confidence            899999999999999999999999999999999999999999999999999999999998  57899988853

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=2.8e-36  Score=223.04  Aligned_cols=70  Identities=37%  Similarity=0.582  Sum_probs=66.8

Q ss_pred             CCccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHh
Q 036652            1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRL   72 (240)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~   72 (240)
                      |||+||+|++|||.++|||||||||+||||||+||||||||+||||||||+|++|+|+||  +|..||++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~--~~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR--KLQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECG--GGGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCC--CHHHHHhhhc
Confidence            999999999999999999999999999999999999999999999999999999999997  6888888553

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=1e-35  Score=224.10  Aligned_cols=68  Identities=38%  Similarity=0.603  Sum_probs=66.0

Q ss_pred             CCccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHH
Q 036652            1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIER   70 (240)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~R   70 (240)
                      |||+||+|++|||.++|+|||||||+||||||+||||||||+||||||||+|++|+|+||  +|..||++
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~--~~~~vi~~   76 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR--KLQPMITS   76 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECG--GGGGGTSS
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCc--cHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999987  68899886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	240
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	1e-31
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	3e-31
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	2e-30

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (273), Expect = 1e-31
 Identities = 36/69 (52%), Positives = 50/69 (72%), Gaps = 2/69 (2%)

Query: 2  GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEP 61
          GR KI I RI +   RQVTF+KR+ GL+KK +ELSVLCD +I LIIF+S+ KL QY +  
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 62 FRMEQIIER 70
            M++++ +
Sbjct: 61 --MDKVLLK 67

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 3e-31
 Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)

Query: 1  MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTE 60
           GR KI ++ I+N   R  TFSKR+ G++KK +ELS L   Q+ L++ S TG +  + T 
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 61

Query: 61 PFRMEQIIER 70
            +++ +I  
Sbjct: 62 --KLQPMITS 69

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  105 bits (265), Expect = 2e-30
 Identities = 32/69 (46%), Positives = 43/69 (62%), Gaps = 2/69 (2%)

Query: 2  GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEP 61
           R KI IK IEN T R VTFSKR+ G++KK  ELSVL   Q+ L++ S TG +  + T  
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP- 61

Query: 62 FRMEQIIER 70
           + E I+ +
Sbjct: 62 -KFEPIVTQ 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	240
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	99.98

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-37  Score=217.74  Aligned_cols=71  Identities=51%  Similarity=0.808  Sum_probs=68.6

Q ss_pred             CccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhc
Q 036652            2 GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKV   74 (240)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~   74 (240)
                      ||+||+|++|||+.+|+|||||||+||||||.||||||||+||||||||+|++|+|+||  ++++||+||+.+
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~--~~~~vl~ry~~~   71 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST--DMDKVLLKYTEY   71 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESS--CHHHHHHHHHHC
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCC--CHHHHHHHHhcC
Confidence            89999999999999999999999999999999999999999999999999999999997  599999999863

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-35  Score=213.34  Aligned_cols=71  Identities=37%  Similarity=0.569  Sum_probs=68.6

Q ss_pred             CCccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhh
Q 036652            1 MGRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLK   73 (240)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~   73 (240)
                      +||+||+|++|||+.+|+|||||||.||||||.||||||||+||||||||+|++|+|+||  +++.|+++|+.
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~--~~~~vi~~~~~   72 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR--KLQPMITSETG   72 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECG--GGHHHHSSHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCC--CHHHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999987  69999999974

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=3.3e-35  Score=212.75  Aligned_cols=71  Identities=45%  Similarity=0.637  Sum_probs=68.7

Q ss_pred             CccccceeEecCCCCccccccccccchhhhhhhhhcccCCceEEEeecCCCCccccCCCchhHHHHHHHHhhc
Q 036652            2 GRGKIAIKRIENPTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKLCQYCTEPFRMEQIIERRLKV   74 (240)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELsvLCda~V~lIifS~~gkl~e~~s~~~s~~~il~RY~~~   74 (240)
                      ||+||+|++|+|..+|+|||||||.||||||.||||||||+||||||||+|++|+|+||  ++..||+||...
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp--~v~~vl~r~~~~   73 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP--KFEPIVTQQEGR   73 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECT--TTTHHHHSHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCC--CHHHHHHHHhcc
Confidence            89999999999999999999999999999999999999999999999999999999997  599999999864