Citrus Sinensis ID: 036662

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNSLTSHGNNQKKEAGVDPPHSRWQDASSFELDATTQRYACFLFCNTTGFLASLSIILLLISGLPLNRRIFMWILMGTRDAVFEFNRYKFENALCAF
Secondary Structure (PSIPRED)
cccHHHHHHHcccHHHHHHHHHcccHHHHHHHcccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHccccHHHHHHcccccccccHHHHHHHccccccHHHHHHHHHHccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccHHHHHHHHHHcHHHHHHHccccccccHHHHHHHcccHHHHHHHHHcccHHHHHHccccccHHHHHHHcccHHHHHHHHHcccHHHcccccccccccHHHHHHHHHHHHcccHHHHHHHHHccccHHHHcccccccccHHHHHHHcccHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHccccccccccccccccccEcccccccccccHHHHHccccccccccccccccEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHEEEEEEEEEEEEEHHcccccccEEcc
Coil and Loop (DISEMBL)
MESKLYEAALAGSVTSLLEFLQKDRLILERaamncpsetpLHVAALLRHKDFAKEILrqkpgiageldsrkssalhIASQKRYVGMKSNRIDVLEELVRarplaasaplIWVETILHLCVKHNQLEALKVLLEntddseflnakddygMSILHLAVADKQIEYynqseccyangftAWDILANSKRKMKDWEIGELLRRAGAIsakemqqpatkvsitqtnsltshgnnqkkeagvdpphsrwqdassfeldATTQRYACFLFCNTTGFLASLSIILLLISGLPLNRRIFMWILMGTRDAVFEFNRYKFENALCAF
Flexible Loop (DISEMBL)
MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQkpgiageldsrkssalhiasqkryvgmksNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNSLTSHGNNQKKEAGVDPPHSRWQDASSFELDATTQRYACFLFCNTTGFLASLSIILLLISGLPLNRRIFMWILMGTRDAVFEFNRYKFENALCAF
Low Complexity Region (SEG)
MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNSLTSHGNNQKKEAGVDPPHSRWQDASSFELDATTQRYACFLFCNTTGFlaslsiilllisglplNRRIFMWILMGTRDAVFEFNRYKFENALCAF
Disordered region (IsUnstruct)
*****YEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQ*****************IASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANGFTAWDILANSKRKMKDWEIGELLRRA************************************************FELDATTQRYACFLFCNTTGFLASLSIILLLISGLPLNRRIFMWILMGTRDAVFEFNRYKFENALC**
Disordered Region (DISOPRED)
MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANGFTAWDILANSKRKMKDWEIGELLR*******************************Q**********************ATTQRYACFLFCNTTGFLASLSIILLLISGLPLNRRIFMWILMGTRDAVFEFNRYKFENALCAF
Disordered Region (DISEMBL)
MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISA************TQTNS********************WQDASSFELDATTQRYACFLFCNTTGFLASLSIILLLISGLPLNRRIFMWILMGTRDAVFEFNRYKFENALCAF
Disordered Region (DISPRO)
*ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAIS***********SITQTNSL*SHGNNQKKEAGVDPPHSRWQDASSFELDATTQRYACFLFCNTTGFLASLSIILLLISGLPLNRRIFMWILMGTRDAVFEFNRYKFENALCAF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNSLTSHGNNQKKEAGVDPPHSRWQDASSFELDATTQRYACFLFCNTTGFLASLSIILLLISGLPLNRRIFMWILMGTRDAVFEFNRYKFENALCAF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.572	0.306	0.243	0.0002
Q9XZC0	1413	Alpha-latrocrustotoxin-Lt	N/A	no	0.503	0.112	0.252	0.0002
Q02989	1411	Alpha-latroinsectotoxin-L	N/A	no	0.439	0.098	0.278	0.0002
P16157	1881	Ankyrin-1 OS=Homo sapiens	yes	no	0.458	0.077	0.281	0.0008

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 89/218 (40%), Gaps = 37/218 (16%)

Query: 3   SKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPG 62
           + L  AA+ G    + + L K   +LE +  N  ++  LH+AA   H +  K +L + P 
Sbjct: 200 TPLVSAAMRGHTEVVNQLLSKAGNLLEISRSN--NKNALHLAARQGHVEVIKALLSKDPQ 257

Query: 63  IAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKH 122
           +A  +D +  +ALH+A       +K    +V++ L+ A P     P     T LH+  + 
Sbjct: 258 LARRIDKKGQTALHMA-------VKGQSSEVVKLLLDADPAIVMQPDKSCNTALHVATRK 310

Query: 123 NQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANGFTAWDILA 182
            + E +++LL   D +     +D                              TA DI  
Sbjct: 311 KRAEIVELLLSLPDTNANTLTRDHK----------------------------TALDIAE 342

Query: 183 NSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQT 220
                 +   I E L R+GA+ A E+ QP  ++  T T
Sbjct: 343 GLPLSEESSYIKECLARSGALRANELNQPRDELRSTVT 380

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XZC0|LCTA_LATTR Alpha-latrocrustotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=2 SV=2

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 39/198 (19%)

Query: 25  RLILER--AAMNCPSE---TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIAS 79
           RL+L +    +N P +   TPLH+A+  ++ DF K +L +   +     + + + LH+A+
Sbjct: 512 RLLLAKNNGLLNVPDKNGYTPLHIASERKNNDFVKFLLEKGADVNVRTFANELTPLHLAA 571

Query: 80  QKRYVGMKSNRIDVLEELVRARPLAASAPL---------------------IWVE----- 113
           ++ +  +    ++     V A+  A   PL                     I ++     
Sbjct: 572 RQDFTIIVKTLMEKRGIDVNAKERAGFTPLHLSITSNSRAARTLINETPAGINIKSNSGL 631

Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYAN 173
           T LHL V  N L A KVL+++    + LN  D+ GM+ LH A     +E+       Y  
Sbjct: 632 TPLHLAVLQNNLSAAKVLVKSNKKVK-LNEMDNNGMTPLHYASMLGNLEF-----VKYFT 685

Query: 174 GFTAWDILANSKRKMKDW 191
                D+  N+K K+K+W
Sbjct: 686 SEQGIDV--NAKTKVKNW 701

Crustacean-selective presynaptic neurotoxin that induces neurotransmitter exocytosis. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|Q02989|LITA_LATTR Alpha-latroinsectotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=1 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 12/151 (7%)

Query: 5   LYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIA 64
           ++ AA AG+       L KD  +LE+A  N    TPLH+AA     DF   ++     + 
Sbjct: 504 IHAAASAGNYDVGELLLNKDINLLEKADKN--GYTPLHIAADSNKNDFVMFLIGNNADVN 561

Query: 65  GELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQ 124
               S   + LH+A+++    +    ID+ E  + A+  +   P       LHL +    
Sbjct: 562 VRTKSDLFTPLHLAARRDLTDVTQTLIDITEIDLNAQDKSGFTP-------LHLSISSTS 614

Query: 125 LEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
            E   +L+ NT+    +N K   G++ LHLA
Sbjct: 615 -ETAAILIRNTN--AVINIKSKVGLTPLHLA 642

Insecticidal presynaptic neurotoxin that induces neurotransmitter exocytosis. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism (By similarity). The toxin forms channels with 0.55-0.58 nm entrance diameter and a relatively small conductance in planar phospholipid membranes.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 15/160 (9%)

Query: 3   SKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPG 62
           + L+ AA  G V ++L  L+K+     +A M     TPLHVAA       A+ +L     
Sbjct: 505 TPLHIAAREGHVETVLALLEKE---ASQACMTKKGFTPLHVAAKYGKVRVAELLL----- 556

Query: 63  IAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKH 122
              E D+  ++A        +V +  N +D+++ L+  R  +  +P     T LH+  K 
Sbjct: 557 ---ERDAHPNAAGKNGLTPLHVAVHHNNLDIVK-LLLPRGGSPHSPAWNGYTPLHIAAKQ 612

Query: 123 NQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
           NQ+E  + LL+    +   NA+   G++ LHLA  +   E
Sbjct: 613 NQVEVARSLLQYGGSA---NAESVQGVTPLHLAAQEGHAE 649

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
343887300	469	ankyrin repeat family protein [Citrus un	0.924	0.622	0.422	6e-65
343887299	477	ankyrin repeat family protein [Citrus un	0.939	0.622	0.423	3e-64
224088778	491	predicted protein [Populus trichocarpa]	0.933	0.600	0.414	4e-60
343887301	470	Ankyrin repeat family protein [Citrus un	0.924	0.621	0.424	6e-60
343887311	473	ankyrin repeat family protein [Citrus un	0.927	0.619	0.404	1e-59
359475962	486	PREDICTED: ankyrin repeat-containing pro	0.917	0.596	0.416	1e-56
359475964	491	PREDICTED: ankyrin repeat-containing pro	0.920	0.592	0.417	2e-56
225444820	493	PREDICTED: ankyrin repeat-containing pro	0.930	0.596	0.349	8e-45
224092119	471	predicted protein [Populus trichocarpa]	0.930	0.624	0.357	1e-44
296081692	444	unnamed protein product [Vitis vinifera]	0.794	0.565	0.391	3e-43

>gi|343887300|dbj|BAK61846.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  253 bits (647), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 161/381 (42%), Positives = 211/381 (55%), Gaps = 89/381 (23%)

Query: 1   MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQK 60
           ME ++YEAA+ GSV SLL+ LQ+D L+L+R+ ++C SETPLH+A++L H+ F +EIL +K
Sbjct: 1   MERRVYEAAVEGSVESLLKLLQEDALLLDRSMVSCYSETPLHIASMLGHESFVREILSRK 60

Query: 61  PGIAGELDSRKSSALHIASQKRYVGMK---------------------------SNRIDV 93
           P +AGELDSR+SSALH A+ K ++G+                               ++V
Sbjct: 61  PELAGELDSRRSSALHFAAAKGHLGIVLKLLSVNPKMCCACDRDGKNPLHVAAIKGHVNV 120

Query: 94  LEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILH 153
           L ELV+ RP A    +   ETILH CV +NQLE LK+L+E  +D EF+N+KDD G +ILH
Sbjct: 121 LRELVQVRPKACRILMDRGETILHACVNYNQLECLKLLVETLNDHEFVNSKDDDGNTILH 180

Query: 154 LAVADKQIEYYN--------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISA 205
           LAV DKQ+E           +     ANGFTA DILA  K  M    IGELLR AGA S 
Sbjct: 181 LAVIDKQVEAVKFLTGSTTIEVNAVNANGFTALDILAQRKLDMNS-TIGELLRCAGARSL 239

Query: 206 KEMQQPATKVSITQTNS-LTSHG---NNQKKE---------------------------- 233
           KE ++PA+  + T+T S +TSH    +NQ +E                            
Sbjct: 240 KETREPASGTTKTRTGSIITSHSGDPSNQGRERPEKARKKQEDKWSEKKRNTLMVVASLI 299

Query: 234 ------AGVDPPHSRWQDASSFELDATTQRYAC-------------FLFCNTTGFLASLS 274
                 AG++PP   WQD S  + DA+  +  C             F   NTTGF+ASLS
Sbjct: 300 ATMAFQAGLNPPGGVWQDDSP-KNDASRHQAGCSVMLTQDEISYNLFFGFNTTGFVASLS 358

Query: 275 IILLLISGLP-LNRRIFMWIL 294
           IILL ISG+P   RR FMWIL
Sbjct: 359 IILLFISGIPFFKRRFFMWIL 379

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887299|dbj|BAK61845.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  251 bits (642), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 169/399 (42%), Positives = 211/399 (52%), Gaps = 102/399 (25%)

Query: 1   MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQK 60
           MES LYEA++ G++T+LL+ L++D LIL++   N   ETPLHVAAL  H  FAKEILR+ 
Sbjct: 4   MESLLYEASVEGNITTLLQLLEQDPLILDKVVANRHHETPLHVAALRGHLHFAKEILRRT 63

Query: 61  PGIAGELDSRKSSALHIASQKRYVGM---------------------------KSNRIDV 93
           P +AGELDSR SS LH+A+QK YV +                              RI V
Sbjct: 64  PVLAGELDSRGSSPLHMAAQKGYVDIVKELLQVNPDMCLARDVDGRNPLHVAAMKGRIQV 123

Query: 94  LEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILH 153
           L EL RARP AA +  IW ET+LHLCVKHNQ EALK L+   +D +FLNAKDDYGMSILH
Sbjct: 124 LVELFRARPFAAYSTTIWNETVLHLCVKHNQFEALKFLVSIMNDPDFLNAKDDYGMSILH 183

Query: 154 LAVADKQIEYYN--------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISA 205
           LAVADKQIE  N        +      +G+TA DILA S+R +KD +I + LR AGA  A
Sbjct: 184 LAVADKQIETINYLLVNTRVEVNALNTHGYTALDILAQSRRDIKDLDIADSLRGAGAFKA 243

Query: 206 KEMQQPATKVSIT----------QTNSLTSHG-----------NNQKK------------ 232
            E+Q    + S +           +NS+  H            N Q+K            
Sbjct: 244 IEIQSSLNRNSTSIGRSVRNNRAVSNSIIPHDQLKALPQECLINLQQKNKTEDWLTRKRD 303

Query: 233 --------------EAGVDPPHSRWQDASSFELDATTQ--------------------RY 258
                         +AGV+PP   WQD      D + +                    RY
Sbjct: 304 ALMVVASLIATMAFQAGVNPPGGVWQDDFPGPGDGSQENSTAEAHQAGTAIIAYKYRSRY 363

Query: 259 ACFLFCNTTGFLASLSIILLLISGLPLNRRIFMWILMGT 297
           A +L  NT GF++SLSIILLLI+GLP  RR FMW+L  T
Sbjct: 364 ANYLAFNTAGFISSLSIILLLITGLPFKRRFFMWVLTVT 402

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088778|ref|XP_002308536.1| predicted protein [Populus trichocarpa] gi|222854512|gb|EEE92059.1| predicted protein [Populus trichocarpa]

 Score =  237 bits (605), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 153/369 (41%), Positives = 203/369 (55%), Gaps = 74/369 (20%)

Query: 1   MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQK 60
           ++ KL +AA+ G+VTSLL  LQ+D+L L+R A+ CP+ETPLH+AA+L H +F +EIL +K
Sbjct: 42  VQRKLLDAAVEGNVTSLLILLQEDKLFLDRCAVTCPAETPLHIAAMLGHLEFTREILWRK 101

Query: 61  PGIAGELDSRKSSALHIAS---------------------------QKRYVGMKSNRIDV 93
           P +  ELD  +SS LH+A+                              +V +   RIDV
Sbjct: 102 PDLVNELDLHRSSPLHLATANGHLEVVRVLLLVDADLCLVKDRNRWNPLHVAVIKGRIDV 161

Query: 94  LEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENT-DDSEFLNAKDDYGMSIL 152
           L+ELV+A+P A        ETILHLCVKH QLEALK L+  T  D+EF+N++DD G +IL
Sbjct: 162 LKELVQAKPDAIRTRGQRGETILHLCVKHYQLEALKFLVGITIADTEFVNSEDDDGFTIL 221

Query: 153 HLAVADKQIEYYN--------QSECCYANGFTAWDI-LANSKRKMKDWEIGELLRRAGAI 203
           HLAVAD++IE  N        Q     ANGFTA DI LA  +R +KD +I   LR  GAI
Sbjct: 222 HLAVADREIEVINYLISESPIQVNALNANGFTALDIVLAQGRRNIKDIDIQNTLREGGAI 281

Query: 204 SAKEMQQPATKV-SITQTNSLTSHGNN--QKK----------------------EAGVDP 238
           S+K+M      + +I   NS T +  N  +KK                      +AG+ P
Sbjct: 282 SSKDMPSTMHGLDAIRPNNSTTLNERNCWRKKNWLEERRNALMVVASLIATMAFQAGISP 341

Query: 239 PHSRWQD------------ASSFELDATTQRYACFLFCNTTGFLASLSIILLLISGLPLN 286
           P+  WQ+              S   D     +A F+  NTT FLAS+S+I+LLISGLP  
Sbjct: 342 PNGNWQEDRQQPPSQSHEAGRSIMADKMPDDFAFFVGYNTTSFLASISVIILLISGLPFK 401

Query: 287 RRIFMWILM 295
            RIF WILM
Sbjct: 402 WRIFTWILM 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887301|dbj|BAK61847.1| Ankyrin repeat family protein [Citrus unshiu]

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 162/382 (42%), Positives = 213/382 (55%), Gaps = 90/382 (23%)

Query: 1   MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQK 60
           ME ++YEAA+ GSV SLL+ LQ+D L+L+R+ ++C SETPLHVA++L H++F +EIL +K
Sbjct: 1   MERRVYEAAVEGSVESLLKLLQEDALLLDRSMVSCYSETPLHVASMLGHENFVREILSRK 60

Query: 61  PGIAGELDSRKSSALHIASQKRYVGMK---------------------------SNRIDV 93
           P +AGELDSR+SSALH+A+ K ++G+                               ++V
Sbjct: 61  PELAGELDSRRSSALHLAAAKGHLGIVLKLVSVNPKMCCACDRDGKNPLHVAAIKGHVNV 120

Query: 94  LEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILH 153
           L ELV+ RP A    +   ETILH CV +NQLE LK+L+E  +D EF+N+KDD G +ILH
Sbjct: 121 LRELVQVRPKACRILMDRGETILHACVNYNQLECLKLLVETLNDHEFVNSKDDDGNTILH 180

Query: 154 LAVADKQIEYYN---------QSECCYANGFTAWDILANSKRKMK-DWEIGELLRRAGAI 203
           LAV DKQ+E            +     ANGFTA DILA  +RK+  +W IGELLR AGA 
Sbjct: 181 LAVIDKQVETIKFLTDSCTTLEVNAVNANGFTALDILA--RRKLDVNWTIGELLRCAGAR 238

Query: 204 SAKEMQQPATKVSITQTNS-LTSHGN---NQKKE-------------------------- 233
           S KE ++P+  ++ T T S +TSH +   NQ +E                          
Sbjct: 239 SQKETREPSPAITQTPTGSIITSHSDDPSNQGRERPEKVRKKQEDEWSEKKRNALMVVAS 298

Query: 234 --------AGVDPPHSRWQD------------ASSFELDATTQRYACFLFCNTTGFLASL 273
                   A ++PP   WQD             SS  L      Y  F   NTTGF+ASL
Sbjct: 299 LIATMAFQAALNPPGGVWQDDSQANDTSPHDAGSSIMLTNVESVYYLFFGFNTTGFVASL 358

Query: 274 SIILLLISGLP-LNRRIFMWIL 294
           SIILLLISG+P   RR FMWIL
Sbjct: 359 SIILLLISGIPFFKRRFFMWIL 380

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343887311|dbj|BAK61857.1| ankyrin repeat family protein [Citrus unshiu]

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 150/371 (40%), Positives = 195/371 (52%), Gaps = 78/371 (21%)

Query: 1   MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQK 60
           ME ++YEAA+ GSV SL+  LQ+D L+L+R  ++C +ETPLH+A++L H DF +EI+ QK
Sbjct: 1   MERRIYEAAVDGSVASLIHLLQEDALVLDRFMVSCHAETPLHIASMLGHVDFVQEIVSQK 60

Query: 61  PGIAGELDSRKSSALHIASQKRY---------------------------VGMKSNRIDV 93
           P +AGELDSRK+S LH+AS K Y                           V      ++V
Sbjct: 61  PELAGELDSRKASPLHVASAKGYLVIVKKLVSVNPEMCYVRDRDGRNPLHVAAIKGHVNV 120

Query: 94  LEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILH 153
           L ELV+ RP AA   +   ETILH CV++NQLE++K LL+   D EF+N K++ G +ILH
Sbjct: 121 LRELVQVRPQAARMLMDRGETILHACVRYNQLESMKFLLDILSDREFVNYKNNDGNTILH 180

Query: 154 LAVADKQIEYYN--------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISA 205
           LAVADKQ E           +     ANG  A DIL   K   KD EI ELL RA AISA
Sbjct: 181 LAVADKQTEAIKVLTTSTTIEVNALNANGLAALDILPQIKGDEKDSEIIELLGRASAISA 240

Query: 206 KEMQQPATKVSITQTNSLTSHGNN------------QKK----------------EAGVD 237
           ++  +   K          SH NN            +KK                + G +
Sbjct: 241 RD--EGKKKKKKKTKTPSKSHVNNDNLARRDEYDWLRKKRSTLMVVASLIATMAFQVGAN 298

Query: 238 PPHSRWQD-------------ASSFELDATTQRYACFLFCNTTGFLASLSIILLLISGLP 284
           PP   WQD              SS   D + + Y  FL  N+  F+ASLSIILLL+SGLP
Sbjct: 299 PPGGLWQDNFVGDEKTPAHNAGSSILADLSPEAYGHFLTSNSIAFVASLSIILLLVSGLP 358

Query: 285 LNRRIFMWILM 295
           +  RI MW+LM
Sbjct: 359 IRNRILMWVLM 369

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475962|ref|XP_002279591.2| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  226 bits (575), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 161/387 (41%), Positives = 201/387 (51%), Gaps = 97/387 (25%)

Query: 5   LYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIA 64
           LYEAA  GSVTSL E L KD LI++R  +N  +ETPLH+AALL H DFAKEIL QKP +A
Sbjct: 2   LYEAAAQGSVTSLYELLLKDPLIIDRVMLNY-TETPLHIAALLGHADFAKEILLQKPELA 60

Query: 65  GELDSRKSSALHIASQKRYV---------------------------GMKSNRIDVLEEL 97
            ELD R+SS LH+A+ K Y+                                 + VL+EL
Sbjct: 61  AELDYRRSSPLHLAAAKGYIEIVKELLFVNPEMCLACDRDGRNPVHLAAMRGHVHVLKEL 120

Query: 98  VRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVA 157
           V+A+P A  A L   ETILHLCVKHNQLEALK+L+E  D  E ++AKDD G +ILHLAVA
Sbjct: 121 VQAKPHATWAALPRGETILHLCVKHNQLEALKLLVETADAHEIMSAKDDNGFTILHLAVA 180

Query: 158 DKQIEYYN--------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQ 209
           DKQ+E  N        +      NG TA DILA S+R ++D EI ELLR  GA  AK + 
Sbjct: 181 DKQLETINYLLSSTSIEVNAVNLNGCTASDILAQSRRDVQDMEISELLRHVGAAKAKNIS 240

Query: 210 QPATKVSITQTNSLTSHGNNQKK------------------------------------- 232
             A +   ++T  ++S  ++Q +                                     
Sbjct: 241 FSAYEFGSSRTRGMSSDADDQNRVPCPIGKNCNEFNKKKDDWLDKQQSALMVVASLIATM 300

Query: 233 --EAGVDPPHSRWQDASSFE----------------------LDATTQRYACFLFCNTTG 268
             +AGV PP   W D S ++                       D     +  FL  NT  
Sbjct: 301 AFQAGVSPPGDVWGDNSKYDPEGSPAPAPSSETPHTAGLSIMADNNPDAHTSFLVTNTIS 360

Query: 269 FLASLSIILLLISGLPLNRRIFMWILM 295
           FLASLSIILLLISGLP+NRR+F+WILM
Sbjct: 361 FLASLSIILLLISGLPINRRLFVWILM 387

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475964|ref|XP_002279612.2| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 156/374 (41%), Positives = 195/374 (52%), Gaps = 83/374 (22%)

Query: 1   MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQK 60
           ME  LYEAA+ GSV SL + LQ+DRLIL+R  ++C +ETPLHVAA+L H DF KEIL  K
Sbjct: 1   MERMLYEAAMEGSVASLQQLLQQDRLILDRVIVDCITETPLHVAAMLGHTDFVKEILCLK 60

Query: 61  PGIAGELDSRKSSALHIASQKRY---------------------------VGMKSNRIDV 93
           P +A ELDSR  S LH+AS K Y                           +     R DV
Sbjct: 61  PELARELDSRGFSPLHLASAKGYTEVVKAFLLVDPDMCFACDRYGRNPLHLAAMKGRFDV 120

Query: 94  LEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDD-SEFLNAKDDYGMSIL 152
           L+ELVRARP AA A     ETILHLCVK NQLEALK L+E  DD ++ +N +D+ G +IL
Sbjct: 121 LKELVRARPHAARARAERGETILHLCVKQNQLEALKFLVETMDDHNDLVNTRDNNGFTIL 180

Query: 153 HLAVADKQIEYYN--------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAIS 204
           HLAVADKQIE  N        +      +G TA DIL +  R + D +IGE  R  GA+ 
Sbjct: 181 HLAVADKQIETVNYLLSNTRVEVNALNTSGLTALDILVHGLRDVGDLDIGEAFRGTGAMR 240

Query: 205 AKEMQQPATKVSITQTNSLTSHGNNQKK---------------------------EAGVD 237
           A     P     + Q   LTS G+   K                           +A V+
Sbjct: 241 AMNTHLPNHHPQVLQ---LTSEGDRSMKSKGKEHWLTRKRDALMVVASLIATMAFQAAVN 297

Query: 238 PPHSRWQDASS-----------------FELDATTQRYACFLFCNTTGFLASLSIILLLI 280
           PP   WQD S+                    D+  + Y  +L  NTTGF++SLSIIL+LI
Sbjct: 298 PPGGAWQDNSTQNSQDTQAGKSHAAGKAIMADSNEEYYRLYLSYNTTGFISSLSIILMLI 357

Query: 281 SGLPLNRRIFMWIL 294
           +GLP   R+FMW+L
Sbjct: 358 TGLPFTHRLFMWML 371

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444820|ref|XP_002278995.1| PREDICTED: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  186 bits (473), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 130/372 (34%), Positives = 177/372 (47%), Gaps = 78/372 (20%)

Query: 2   ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKP 61
           E +LYEA++ GSV SL + + KD L L RAA+ C +ETPLHVAA+L H DFA  +L  KP
Sbjct: 19  ERRLYEASITGSVNSLKQLMAKDPLTLARAAVTCFNETPLHVAAMLGHLDFASYLLTHKP 78

Query: 62  GIAGELDSRKSSALHIASQKRYVGMKS---------------------------NRIDVL 94
            +   LD R  S LH+AS   YV M +                             ++V 
Sbjct: 79  DMTMALDLRGRSPLHLASANGYVEMVNILLSANPDACLIRDEDGRTPLHLAVMKGEVEVT 138

Query: 95  EELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLE-NTDDSEFLNAKDDYGMSILH 153
             LV ARP      L   ETILH  VK N+L ALK+L+E   +D EF+N+KDDYG ++LH
Sbjct: 139 RMLVGARPQVTRYKLDQGETILHSAVKQNRLGALKLLVELAGEDVEFVNSKDDYGNTVLH 198

Query: 154 LAVADKQIEYYN--------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISA 205
            A A KQ E           +      NGFTA DI+ +  R +K  EI E L +AGA+S+
Sbjct: 199 TATALKQYETAKYLVERPEMEVNAVNGNGFTALDIIQHMPRDLKGMEIRESLAKAGALSS 258

Query: 206 KEM-----------------------QQPATKVSITQT---NSLTSHGN---NQKKEAGV 236
           + +                       Q P   V+   T   ++L            +A V
Sbjct: 259 RNLPALPGIGHEFMGESGITMVIENPQTPPPPVAAVLTEKRDALMVAATLIAGMAFQAAV 318

Query: 237 DPPHSRWQD------------ASSFELDATTQRYACFLFCNTTGFLASLSIILLLISGLP 284
           +PP   W +             +S       + Y  F+ CN   F+ASLSI+ L++SG+P
Sbjct: 319 NPPGGVWGEEKVAGNGKKMLAGTSVMAHNYPEGYRLFMTCNAVSFVASLSIVFLVVSGVP 378

Query: 285 LNRR-IFMWILM 295
             +R I MW+LM
Sbjct: 379 FVKRGILMWLLM 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092119|ref|XP_002309480.1| predicted protein [Populus trichocarpa] gi|222855456|gb|EEE93003.1| predicted protein [Populus trichocarpa]

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 135/378 (35%), Positives = 196/378 (51%), Gaps = 84/378 (22%)

Query: 1   MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQK 60
           M+ +L EAA+ G+V +LL+ L++D+L+L+  A +C +ETPLH++A+L H +F ++IL +K
Sbjct: 15  MQRRLKEAAVEGNVIALLKLLEEDKLVLDGCATDCFTETPLHISAMLGHLEFTRKILCRK 74

Query: 61  PGIAGELDSRKSSALHIAS---------------------QKR------YVGMKSNRIDV 93
           P  A ELD   SS LH+A+                     Q R      ++ +   R+DV
Sbjct: 75  PEFAKELDFLGSSPLHLATANGHLEVVRALLSVNPDMCFAQNRDGRNPLHIAVIKGRVDV 134

Query: 94  LEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILH 153
           L+ELV+ +P A        ET+LHLCVKH QLEALK+L+E   D  F+N+KD+ G ++LH
Sbjct: 135 LKELVQNKPEAVLHRTARGETVLHLCVKHFQLEALKLLVETIKDYGFINSKDEDGSTVLH 194

Query: 154 LAVADKQIEYYN--------QSECCYANGFTAWDI-LANSKRKMKDWEIGELLRRAGAIS 204
           LAVADK+IE  +        +     A+GFT  DI LA  +R  KD ++ + L + GA S
Sbjct: 195 LAVADKEIEIISFLIMKTEIEVNAINASGFTVLDIALAQGRRNWKDVDVQDSLHQVGASS 254

Query: 205 AKEMQ------QPATKVSITQTNSLT--------------SHGNNQKK------------ 232
           AK++       +    V++   +  T              S+G  +K+            
Sbjct: 255 AKDLSSTMHRLEAVGAVNLRSEDHFTSLQSRLKRKYQRRQSYGLGEKRNALMIVASLIAT 314

Query: 233 ---EAGVDPPHSRWQDAS-------------SFELDATTQRYACFLFCNTTGFLASLSII 276
              +AG+ PP   WQ+ S             S   D     Y  F+  N+  FLASLS+I
Sbjct: 315 MAFQAGISPPGGLWQEDSQGATSNEHHEAGRSIMADKLPAAYNKFVMHNSIAFLASLSVI 374

Query: 277 LLLISGLPLNRRIFMWIL 294
           LLLISGLP   R  MWIL
Sbjct: 375 LLLISGLPFRWRFSMWIL 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081692|emb|CBI20697.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (460), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 136/347 (39%), Positives = 172/347 (49%), Gaps = 96/347 (27%)

Query: 45  ALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKS---------------- 88
           ALL H DFAKEIL QKP +A ELD R+SS LH+A+ K Y+ +                  
Sbjct: 14  ALLGHADFAKEILLQKPELAAELDYRRSSPLHLAAAKGYIEIVKELLFVNPEMCLACDRD 73

Query: 89  -----------NRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDD 137
                        + VL+ELV+A+P A  A L   ETILHLCVKHNQLEALK+L+E  D 
Sbjct: 74  GRNPVHLAAMRGHVHVLKELVQAKPHATWAALPRGETILHLCVKHNQLEALKLLVETADA 133

Query: 138 SEFLNAKDDYGMSILHLAVADKQIEYYN--------QSECCYANGFTAWDILANSKRKMK 189
            E ++AKDD G +ILHLAVADKQ+E  N        +      NG TA DILA S+R ++
Sbjct: 134 HEIMSAKDDNGFTILHLAVADKQLETINYLLSSTSIEVNAVNLNGCTASDILAQSRRDVQ 193

Query: 190 DWEIGELLRRAGAISAKEMQQPATKVSITQTNSLTSHGNNQKK----------------- 232
           D EI ELLR  GA  AK +   A +   ++T  ++S  ++Q +                 
Sbjct: 194 DMEISELLRHVGAAKAKNISFSAYEFGSSRTRGMSSDADDQNRVPCPIGKNCNEFNKKKD 253

Query: 233 ----------------------EAGVDPPHSRWQDASSFE-------------------- 250
                                 +AGV PP   W D S ++                    
Sbjct: 254 DWLDKQQSALMVVASLIATMAFQAGVSPPGDVWGDNSKYDPEGSPAPAPSSETPHTAGLS 313

Query: 251 --LDATTQRYACFLFCNTTGFLASLSIILLLISGLPLNRRIFMWILM 295
              D     +  FL  NT  FLASLSIILLLISGLP+NRR+F+WILM
Sbjct: 314 IMADNNPDAHTSFLVTNTISFLASLSIILLLISGLPINRRLFVWILM 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.617	0.321	0.263	1.1e-07
TAIR|locus:2172089	426	ANK "ankyrin" [Arabidopsis tha	0.604	0.448	0.244	8.8e-06
TAIR|locus:2176252	442	AT5G51160 "AT5G51160" [Arabido	0.651	0.466	0.260	9.4e-06
TAIR|locus:2157548	480	AT5G54700 "AT5G54700" [Arabido	0.490	0.322	0.242	3.9e-05
TAIR|locus:2012532	441	AT1G14480 "AT1G14480" [Arabido	0.256	0.183	0.370	4.4e-05
TAIR|locus:2123406	406	AT4G11000 "AT4G11000" [Arabido	0.721	0.561	0.247	6.5e-05
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.610	0.360	0.253	7.7e-05
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.642	0.344	0.274	0.00012
TAIR|locus:2180882	457	AT5G15500 [Arabidopsis thalian	0.462	0.319	0.259	0.00017
TAIR|locus:2172099	431	AT5G54620 [Arabidopsis thalian	0.484	0.354	0.271	0.0002

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 57/216 (26%), Positives = 96/216 (44%)

Query:    13 SVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKS 72
             S+  LL  L+ +  + +  A +  + TPL  AA   H +   E+L +   +     S   
Sbjct:   192 SIVQLL--LEHEPQLSKTVAQS--NATPLVSAATRGHSEVVNELLAKDSSLLEISRSNGK 247

Query:    73 SALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLL 132
             +ALH+A+++ +V +    +D   +L R             +T LH+ VK    + +++LL
Sbjct:   248 NALHLAARQGHVDIVRTLLDKDPQLARRTDKKG-------QTSLHMAVKGVSSQVVRLLL 300

Query:   133 ENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN---QSECCYANGFT-----AWDILANS 184
                 D   +   D +G ++LH+A   K+ E  N   Q      N  T     A+DI    
Sbjct:   301 RA--DPAIVMLPDKFGNTVLHIATRKKRAEIVNELLQLPDTNVNALTRDHKTAYDIAEGL 358

Query:   185 KRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQT 220
                 +  EI E+L R GA+ A E+ QP  ++  T T
Sbjct:   359 THSEETAEIKEILSRCGALKANELNQPRDELRKTVT 394

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2172089 ANK "ankyrin" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 8.8e-06, P = 8.8e-06
 Identities = 53/217 (24%), Positives = 101/217 (46%)

Query:     1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQK 60
             + + L+EA+ AG +   +E +       ++  +N    +PLH+A      + A E+++  
Sbjct:    37 IHTPLHEASSAGKLDLAMELMILKPSFAKK--LNEYGLSPLHLAVENDQVELALELVKVD 94

Query:    61 PGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCV 120
             P +         + LH+ ++K         +D+L + + A P +     +  ETILH+ +
Sbjct:    95 PSLVRIRGRGGMTPLHLVAKK-------GDVDLLTDFLLACPESIKDVNVNGETILHITI 147

Query:   121 KHNQLEALKVL------LENTDDS--EFLNAKDDYGMSILHLAVADKQIEYYNQSECCYA 172
              +++ E LKVL      + ++DD   + LN +D  G ++LHLA  +   +   Q   C +
Sbjct:   148 MNDKYEQLKVLTGWMQKMRDSDDVFIDVLNRRDRGGNTVLHLAAYENNDKVVKQLVKCLS 207

Query:   173 --------NGFTAWDILANSKRKMKDWEIGELLRRAG 201
                     +G TA D+L      M   EI E+++ +G
Sbjct:   208 LDRNIQNKSGMTALDVLRARGSHMNK-EIEEIIQMSG 243

GO:0005886 "plasma membrane" evidence=ISM

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0045087 "innate immune response" evidence=IMP

TAIR|locus:2176252 AT5G51160 "AT5G51160" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 9.4e-06, P = 9.4e-06
 Identities = 61/234 (26%), Positives = 104/234 (44%)

Query:    19 EFLQKDRLILERAAMNCPSE--TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALH 76
             E++   +++ +R+  +      +PLH AA     +  +  L  +  +    D    + LH
Sbjct:    27 EYVVAGKILRQRSVFDLDKNGFSPLHAAAAAGQVETVRATLGVEKKLCRLKDRDGKTPLH 86

Query:    77 IASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLEN-T 135
             +A+ +        +IDV+ E+V +         +  +T LHL V H ++EA+  ++E  T
Sbjct:    87 VATMR-------GKIDVIREIVASCVDCLEDETVQGQTALHLAVLHLEIEAVIAIVELIT 139

Query:   136 DDSEF--LNAKDDYGMSILHLAVADKQ---IEYYNQS--------ECCYAN--GFTAWDI 180
             + + F  LN KD+ G + LHLA   K    IE   Q+        E    N  G +A D+
Sbjct:   140 ETNRFDVLNKKDEQGNTALHLATWRKNRQVIEVLVQAIPEESRSFEVNAMNKMGLSAMDL 199

Query:   181 LANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNSLTSHGNNQKKEA 234
             L     +  D EI E L  AGA   +++    T V  T T++ T      K ++
Sbjct:   200 LVMFPSEAGDREIYEKLIEAGAQRGRDIG--TTNVERT-TSTSTCQERTMKSQS 250

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2157548 AT5G54700 "AT5G54700" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 41/169 (24%), Positives = 74/169 (43%)

Query:     1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQK 60
             M   ++ A       +  + +Q+   ++E        E+ LH+   + H++FAK I+   
Sbjct:     1 MTPPIFNAIRKNDEATFNQLIQEKPSVIEERDKENNGESVLHLVTKIGHQEFAKTIIGIC 60

Query:    61 PGIAGELD--SRKSSALHIASQKRYVGMK-------SNRIDVLEELVRARPLAASAPLIW 111
             P ++  LD  S   + L +A      G+        SN I +L+      P  +S  ++ 
Sbjct:    61 PSLSTPLDDISEVENDLKLAELVNNDGLTPLHCAAVSNSIKILKVFSHKTP--SSFDILT 118

Query:   112 V---ETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVA 157
                 ET+ HL V+H  L+A K + +     + L   D YG ++LH A +
Sbjct:   119 QPHNETVFHLAVRHKNLKAFKFMAQKVHLEKLLYKPDKYGNTVLHTAAS 167

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012532 AT1G14480 "AT1G14480" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 4.4e-05, P = 4.4e-05
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query:     1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQK 60
             M+ +L +AA +GS+  L   + ++  ILE         TPLHVAA+  + +FA E+L  K
Sbjct:     1 MDLRLQQAAESGSINELYALIDENPYILENIDAVPFVSTPLHVAAVFGNIEFAMEMLNLK 60

Query:    61 PGIAGELDSRKSSALHIASQK 81
             P  A +L++   S LH+A +K
Sbjct:    61 PSFARKLNTSGYSPLHLAVEK 81

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2123406 AT4G11000 "AT4G11000" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 6.5e-05, P = 6.5e-05
 Identities = 64/259 (24%), Positives = 107/259 (41%)

Query:     3 SKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPG 62
             ++L   A  G +  L E + +D  IL+        ETPLH+AA      FA E++  KP 
Sbjct:    40 ARLKTVAQVGDIERLYELIAEDPNILDHFDKVSFCETPLHIAAEKGQTHFAMELMTLKPS 99

Query:    63 IAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVE----TILHL 118
             +A +L+    S LH+A Q  ++     +  +L  + RA        L W +    T+ H+
Sbjct:   100 LALKLNVSGFSPLHLALQNNHI-----QTVLLGWIKRAN---RKEILDWKDEDGNTVFHI 151

Query:   119 CVKHNQLEALKVLLENTDDSEFLNAKDDYGMSIL--HLA----VADKQIEYYNQSECCYA 172
                 NQ E +K LL  T   +  N      M IL  H +    VA K +    +   C +
Sbjct:   152 AALINQTEVMK-LLRKTVKVKAKNLDGKTAMDILQTHQSPCFPVAKKLLRSAKERPFCGS 210

Query:   173 N----GFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNSLTSHGN 228
                  G+ + ++    KR          + +  +I+A +   P   + +     +T+   
Sbjct:   211 TTTLAGYLSRNLSFIEKRNSLLGLSNLSMTKDRSINASD---PRNAILVVAILIVTA--- 264

Query:   229 NQKKEAGVDPPHSRWQDAS 247
                 +AG+ PP   WQD +
Sbjct:   265 --TYQAGLSPPGGFWQDTN 281

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 7.7e-05, P = 7.7e-05
 Identities = 55/217 (25%), Positives = 90/217 (41%)

Query:    31 AAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVG----- 85
             ++ N  S+TPLH+AA L H      +L         L+    + L +A      G     
Sbjct:    55 SSTNTKSDTPLHLAARLGHTSILLLMLESTAESIESLEETVPNDLKLAEMVNKDGFTPLH 114

Query:    86 --MKSNRIDVLEELVRARPLAA-SAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLN 142
               + +  ++ L   +   PL+  S  L   ET+ HL  +H ++EA   + +N +    L 
Sbjct:   115 CAVMNGSVETLTAFINKAPLSFDSVTLQTSETVFHLAARHKKMEAFIFMAKNANLRRLLY 174

Query:   143 AKDDYGMSILHLAVAD---KQIEYYNQS---ECCYAN--GFTAWDILANSKR--KMKDWE 192
               D  G ++LH A +      + Y       E    N  GF A D+L       KM    
Sbjct:   175 ELDGEGNTVLHAAASVGFLSLVSYIVHEIKIEVTTQNDKGFEAVDLLNKDDEDFKMMSMI 234

Query:   193 IG---ELLRRAGAISAKEMQQPATKVSITQTNSLTSH 226
             +G   E+++RA A S ++   P+T+  +   NS   H
Sbjct:   235 LGHDSEIVQRA-ASSPRDAYTPSTQTEVE--NSEIHH 268

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 0.00012, P = 0.00012
 Identities = 62/226 (27%), Positives = 98/226 (43%)

Query:     5 LYEAALAGSVTSLLEFLQKDRLILERAAMNCPSE-TPLHVAALLRHKDFAKEILRQKPGI 63
             L+ AA+ G    +   L  D  + +      PS  TPL  AA+  H +   ++L  K G 
Sbjct:   168 LHIAAIQGHHAIVEVLLDHDATLSQTFG---PSNATPLVSAAMRGHTEVVNQLL-SKAGN 223

Query:    64 AGELD-SRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKH 122
               E+  S   +ALH+A+++ +V       +V++ L+   P  A       +T LH+ VK 
Sbjct:   224 LLEISRSNNKNALHLAARQGHV-------EVIKALLSKDPQLARRIDKKGQTALHMAVKG 276

Query:   123 NQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ---IEYYNQSECCYANGFT--- 176
                E +K+LL+   D   +   D    + LH+A   K+   +E         AN  T   
Sbjct:   277 QSSEVVKLLLDA--DPAIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDH 334

Query:   177 --AWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQT 220
               A DI        +   I E L R+GA+ A E+ QP  ++  T T
Sbjct:   335 KTALDIAEGLPLSEESSYIKECLARSGALRANELNQPRDELRSTVT 380

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2180882 AT5G15500 [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 0.00017, P = 0.00017
 Identities = 41/158 (25%), Positives = 78/158 (49%)

Query:     1 MESKLYEAAL-AGSVTSLLEFLQKDRLILERAAMNCPS-ETPLHVAALLRHKDFAKEILR 58
             M+ +  EAA  +G++  L E + +D  +L++   + P   TPLHVAA+    +FA E++ 
Sbjct:     1 MDQRSLEAAAKSGNIDLLYELIHEDPYVLDKTD-HVPFVNTPLHVAAVNGKTEFAMEMMN 59

Query:    59 QKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHL 118
              KP  A +L++   + LH+A +  +  +    + V   LVR +      PL+       +
Sbjct:    60 LKPSFARKLNADGLTPLHLAVEHGHFWLVLEVVKVDPSLVRIKGRHGMTPLL-------V 112

Query:   119 CVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
              V   +++ +        +S  ++A  + G + LH+AV
Sbjct:   113 AVSRKKIDLMSEFFLGCPES-IVDANVN-GENALHIAV 148

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172099 AT5G54620 [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00020, P = 0.00020
 Identities = 44/162 (27%), Positives = 70/162 (43%)

Query:     1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQK 60
             M+ +L     +G+V +L   + KD  IL+   +     TPLH A+     D A E++  K
Sbjct:     1 MDRRLLWVTDSGNVDALYALIHKDPYILQNIDVLPFVHTPLHEASSTGKTDLAMELMVLK 60

Query:    61 PGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCV 120
             P  A +L+S   S LH+A +   V +    + +  +LV         PL       HL V
Sbjct:    61 PTFAKKLNSDGVSPLHLAVENHQVQLALELVKINPDLVLVAGRKGMTPL-------HLVV 113

Query:   121 KHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
             K      L   L    +S  +   +  G + LH+AV + + E
Sbjct:   114 KKGDANLLTEFLLACPES--IKDTNVNGETALHIAVMNDRYE 153

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-07
pfam13962	114	pfam13962, PGG, Domain of unknown function	8e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 65.1 bits (159), Expect = 3e-13
 Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 12/125 (9%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            TPLH+AA   H +  K +L     +    D+   + LH+A+       K+  +++++ L
Sbjct: 8   RTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAA-------KNGHLEIVKLL 59

Query: 98  VRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVA 157
           +       +A      T LHL  ++  L+ +K+LL++  D   +NA+D  G + LHLA  
Sbjct: 60  LEKGADV-NARDKDGNTPLHLAARNGNLDVVKLLLKHGAD---VNARDKDGRTPLHLAAK 115

Query: 158 DKQIE 162
           +  +E
Sbjct: 116 NGHLE 120

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 49.7 bits (119), Expect = 9e-08
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 12/128 (9%)

Query: 5   LYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIA 64
           L+ AA  G +  +   L+    +  +   +    TPLH+AA   H +  K +L +   + 
Sbjct: 11  LHLAASNGHLEVVKLLLENGADVNAK---DNDGRTPLHLAAKNGHLEIVKLLLEKGADVN 67

Query: 65  GELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQ 124
              D   ++ LH+A++          +DV++ L++      +A      T LHL  K+  
Sbjct: 68  -ARDKDGNTPLHLAARN-------GNLDVVKLLLKHG-ADVNARDKDGRTPLHLAAKNGH 118

Query: 125 LEALKVLL 132
           LE +K+LL
Sbjct: 119 LEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 14/105 (13%)

Query: 41  LHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRA 100
           LH+AA   + +  K +L +   +         +ALH+A+       ++  +++++ L+  
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADV---NLGDTDTALHLAA-------RNGNLEIVKLLLEH 50

Query: 101 RPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKD 145
                +A      T LHL  ++  LE +K+LLE+  D   +N KD
Sbjct: 51  GA-DVNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD---INLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 17/90 (18%)

Query: 75  LHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVET--ILHLCVKHNQLEALKVLL 132
           LH+A++       +  +++++ L     L   A +   +T   LHL  ++  LE +K+LL
Sbjct: 1   LHLAAK-------NGNLELVKLL-----LEKGADVNLGDTDTALHLAARNGNLEIVKLLL 48

Query: 133 ENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
           E+  D   +NAKD  G + LHLA  +  +E
Sbjct: 49  EHGAD---VNAKDKDGNTALHLAARNGNLE 75

Length = 91

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 44.0 bits (105), Expect = 8e-06
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 14/76 (18%)

Query: 234 AGVDPPHSRWQDASSFEL-DAT----TQRYACFLFCNTTGFLASLSIILLLISGLPLNRR 288
           AG  PP   WQD               +R+  F   NT  F+ASL  ++LL+  +P   R
Sbjct: 25  AGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVSNTIAFVASLVAVILLLYIVPSFSR 84

Query: 289 ---------IFMWILM 295
                      +W+ +
Sbjct: 85  RLPRLLALLTLLWLSL 100

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVA 157
           T LH      +LE +K LLE   D   +N  D+ G + LH+A  
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVD---INRTDEDGNTALHIAAE 43

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 97  LVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
           L+   P+  +A      T LHL  K+  LE ++ LL+   D   LN +D  G++ L LA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVD---LNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 116 LHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
           +H+ +KHN  + +K+LLE      + N KD+ G S LH A 
Sbjct: 161 IHIAIKHNFFDIIKLLLEK---GAYANVKDNNGESPLHNAA 198

Length = 434

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	99.98
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.97
PHA02798	489	ankyrin-like protein; Provisional	99.97
KOG0510	929	consensus Ankyrin repeat protein [General function	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.95
KOG0508	615	consensus Ankyrin repeat protein [General function	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.95
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.94
PHA02792	631	ankyrin-like protein; Provisional	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.93
PHA02730	672	ankyrin-like protein; Provisional	99.93
PHA02730	672	ankyrin-like protein; Provisional	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.92
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.92
PHA02743	166	Viral ankyrin protein; Provisional	99.91
KOG0514	452	consensus Ankyrin repeat protein [General function	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.9
PHA02884	300	ankyrin repeat protein; Provisional	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
PHA02741	169	hypothetical protein; Provisional	99.89
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.89
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.88
PHA02792	631	ankyrin-like protein; Provisional	99.88
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.87
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.87
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.87
PHA02884	300	ankyrin repeat protein; Provisional	99.87
KOG0514	452	consensus Ankyrin repeat protein [General function	99.86
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.85
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.84
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.81
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.79
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.79
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.79
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.78
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.77
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.76
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.75
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.68
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.66
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.65
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.63
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.63
PF13962	113	PGG: Domain of unknown function	99.6
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.56
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.56
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.54
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.53
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.52
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.5
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.49
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.45
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.33
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.25
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.01
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.99
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.91
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.9
PF13606	30	Ank_3: Ankyrin repeat	98.88
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.85
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.84
PF13606	30	Ank_3: Ankyrin repeat	98.83
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.83
KOG0522	560	consensus Ankyrin repeat protein [General function	98.82
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.8
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.72
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.66
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.65
KOG0522	560	consensus Ankyrin repeat protein [General function	98.62
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.56
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.5
KOG0511	516	consensus Ankyrin repeat protein [General function	98.44
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.42
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.33
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.28
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.19
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.13
KOG2384	223	consensus Major histocompatibility complex protein	97.99
KOG0511	516	consensus Ankyrin repeat protein [General function	97.97
KOG2384	223	consensus Major histocompatibility complex protein	97.92
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.26
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.0
KOG2505	591	consensus Ankyrin repeat protein [General function	96.85
KOG2505	591	consensus Ankyrin repeat protein [General function	96.17
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.22
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.07
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.18
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	87.68
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	86.98
KOG0513	503	consensus Ca2+-independent phospholipase A2 [Lipid	86.19

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.9e-39  Score=246.99  Aligned_cols=193  Identities=23%  Similarity=0.208  Sum_probs=173.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCh-hhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHh-hCCCcccccCCCCCcHHHHHH
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDR-LILERAAMNCPSETPLHVAALLRHKDFAKEILR-QKPGIAGELDSRKSSALHIAS   79 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~g~tpLh~A~   79 (316)
                      .++.+.+++.....-|+.+++..+ +++.+  .|.+|+|||||||..|+.+++.+|++ .+..+ +.+|..||||||+|+
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r--~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~-ddkDdaGWtPlhia~   80 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNAR--DDQDGRTPLHWACSFGHVEIVYFLLSQPNVKP-DDKDDAGWTPLHIAA   80 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhcc--ccccCCceeeeeeecCchhHHHHHHhcCCCCC-CCccccCCchhhhhh
Confidence            378889999999999999999987 34222  24599999999999999999999995 44555 778999999999999


Q ss_pred             HcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcC
Q 036662           80 QKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADK  159 (316)
Q Consensus        80 ~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~  159 (316)
                      ..|+.++       |+.|+.+.+.+++..++.|+|+||+|+..|+.+++++|++.|+.   ++.+|..|.||||.|+..|
T Consensus        81 s~g~~ev-------Vk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~---i~~kD~~~qtplHRAAavG  150 (226)
T KOG4412|consen   81 SNGNDEV-------VKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL---IRIKDKQGQTPLHRAAAVG  150 (226)
T ss_pred             hcCcHHH-------HHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCC---CcccccccCchhHHHHhcc
Confidence            9999988       99999965899999999999999999999999999999999998   9999999999999999999


Q ss_pred             Ccceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCc
Q 036662          160 QIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQP  211 (316)
Q Consensus       160 ~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~  211 (316)
                      ..++++       .+|.+|+.|+||||.|.-    .++.++..+|+++||+...++..+
T Consensus       151 klkvie~Li~~~a~~n~qDk~G~TpL~~al~----e~~~d~a~lLV~~gAd~~~edke~  205 (226)
T KOG4412|consen  151 KLKVIEYLISQGAPLNTQDKYGFTPLHHALA----EGHPDVAVLLVRAGADTDREDKEG  205 (226)
T ss_pred             chhhHHHHHhcCCCCCcccccCccHHHHHHh----ccCchHHHHHHHhccceeeccccC
Confidence            999998       899999999999999965    578999999999999998776644

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8e-38  Score=240.32  Aligned_cols=167  Identities=23%  Similarity=0.251  Sum_probs=154.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHc-ChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhh-CCCcccccCCCCCcHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQK-DRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQ-KPGIAGELDSRKSSALHIA   78 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A   78 (316)
                      .+|||||||..|+.++|++|+++ +-.+   +.+|..|+||||.|+..|+.++|+.|+.+ |+++ +..+..|.||||+|
T Consensus        38 ~Rt~LHwa~S~g~~eiv~fLlsq~nv~~---ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyA  113 (226)
T KOG4412|consen   38 GRTPLHWACSFGHVEIVYFLLSQPNVKP---DDKDDAGWTPLHIAASNGNDEVVKELLNRSGADV-NATTNGGQTCLHYA  113 (226)
T ss_pred             CCceeeeeeecCchhHHHHHHhcCCCCC---CCccccCCchhhhhhhcCcHHHHHHHhcCCCCCc-ceecCCCcceehhh
Confidence            47999999999999999999963 4333   45599999999999999999999999999 9998 99999999999999


Q ss_pred             HHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhc
Q 036662           79 SQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVAD  158 (316)
Q Consensus        79 ~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~  158 (316)
                      +..|+.++       +++|++ +++.++.+|..|+||||.|+.-|..+++++|+..|+.   +|.+|++|+||||.|...
T Consensus       114 agK~r~eI-------aqlLle-~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~---~n~qDk~G~TpL~~al~e  182 (226)
T KOG4412|consen  114 AGKGRLEI-------AQLLLE-KGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAP---LNTQDKYGFTPLHHALAE  182 (226)
T ss_pred             hcCChhhH-------HHHHHh-cCCCCcccccccCchhHHHHhccchhhHHHHHhcCCC---CCcccccCccHHHHHHhc
Confidence            99999998       999999 8899999999999999999999999999999999998   999999999999999888


Q ss_pred             CCcceec-------ccccccCCCCCHHHHHHh
Q 036662          159 KQIEYYN-------QSECCYANGFTAWDILAN  183 (316)
Q Consensus       159 ~~~~~v~-------~~~~~~~~g~TpL~~a~~  183 (316)
                      |+.+...       +.+..|+.| ||+..++.
T Consensus       183 ~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  183 GHPDVAVLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             cCchHHHHHHHhccceeeccccC-chHHHHHH
Confidence            8877654       899999988 99998876

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-35  Score=256.02  Aligned_cols=187  Identities=18%  Similarity=0.117  Sum_probs=169.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      ++||||+|+..|+.++++.|++.++++..     .+|.||||+|+..|+.+++++|++.|+++ +.+|..|+||||+|+.
T Consensus        30 G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~-----~d~~TpLh~Aa~~g~~eiV~lLL~~Gadv-n~~d~~G~TpLh~Aa~  103 (284)
T PHA02791         30 GHSALYYAIADNNVRLVCTLLNAGALKNL-----LENEFPLHQAATLEDTKIVKILLFSGMDD-SQFDDKGNTALYYAVD  103 (284)
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHCcCCCcC-----CCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHH
Confidence            47999999999999999999999987632     24789999999999999999999999998 8899999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCC-cHHHHHHhcCCHHHHHHHHhcCCCcccccccc-CCCCcHHHHHHhc
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVE-TILHLCVKHNQLEALKVLLENTDDSEFLNAKD-DYGMSILHLAVAD  158 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d-~~g~t~Lh~A~~~  158 (316)
                      .|+.++       +++|++ .+++++.++..|+ ||||+|+..|+.+++++|++++.+   .  .| ..|+||||+|+..
T Consensus       104 ~g~~ei-------vk~Ll~-~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~---~--~d~~~g~TpLh~Aa~~  170 (284)
T PHA02791        104 SGNMQT-------VKLFVK-KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS---T--FDLAILLSCIHITIKN  170 (284)
T ss_pred             cCCHHH-------HHHHHH-CCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc---c--cccccCccHHHHHHHc
Confidence            999998       999999 8888888888885 899999999999999999998754   2  23 3589999999999


Q ss_pred             CCcceec-------ccccccCCCCCH-HHHHHhccCCCcHHHHHHHHHHhCCCcccccCC
Q 036662          159 KQIEYYN-------QSECCYANGFTA-WDILANSKRKMKDWEIGELLRRAGAISAKEMQQ  210 (316)
Q Consensus       159 ~~~~~v~-------~~~~~~~~g~Tp-L~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~  210 (316)
                      |+.++++       +++.+|..|.|| ||+|+.    .++.+++++|+++|++.+.+...
T Consensus       171 g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~----~~~~e~v~lLl~~Ga~in~~~~~  226 (284)
T PHA02791        171 GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAID----NKDLEMLQALFKYDINIYSVNLE  226 (284)
T ss_pred             CCHHHHHHHHHCCCCCCcccCCCCChHHHHHHH----cCCHHHHHHHHHCCCCCccCccc
Confidence            9999998       799999999987 999999    89999999999999999877653

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=3.7e-35  Score=265.01  Aligned_cols=199  Identities=18%  Similarity=0.170  Sum_probs=182.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHc-ChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccC-CCCCcHHHHHHHc
Q 036662            4 KLYEAALAGSVTSLLEFLQK-DRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELD-SRKSSALHIASQK   81 (316)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~~   81 (316)
                      .++.|++.|+++.|+.|++. +.+++   ..|.+|.|+|||||.+++++++++|+++|+++ |..+ ..+.||||||+++
T Consensus        47 ~~v~A~q~G~l~~v~~lve~~g~~v~---~~D~~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar~  122 (600)
T KOG0509|consen   47 DIVKATQYGELETVKELVESEGESVN---NPDREGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhHhhcchHHHHHHHHhhcCcCCC---CCCcCCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHHc
Confidence            35789999999999999998 77664   44889999999999999999999999999999 6555 8899999999999


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCc
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQI  161 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  161 (316)
                      |+..+       +++|++ +|++++.+|.+|.||||+|+..|+.-.|-+|+..|+|   +|.+|.+|+||||+|+.+|..
T Consensus       123 G~~~v-------v~lLlq-hGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d---~d~~D~~grTpLmwAaykg~~  191 (600)
T KOG0509|consen  123 GHISV-------VDLLLQ-HGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD---IDLRDNNGRTPLMWAAYKGFA  191 (600)
T ss_pred             CcHHH-------HHHHHH-cCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhccc---CCCcCCCCCCHHHHHHHhccc
Confidence            99999       999999 9999999999999999999999999999999999999   999999999999999999988


Q ss_pred             ceec-------cccccc-CCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCccccccccccC
Q 036662          162 EYYN-------QSECCY-ANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTN  221 (316)
Q Consensus       162 ~~v~-------~~~~~~-~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~  221 (316)
                      ..++       .++.+| ++|.||||+|+.    .++.+++.+|++.|++-...+..+.+|.++++.+
T Consensus       192 ~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~----~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  192 LFVRRLLKFGASLLLTDDNHGNTPLHWAVV----GGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHHHHHhcccccccccccCCchHHHHHh----cCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            8555       777777 899999999999    8899999977888888888888889999888766

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-33  Score=261.97  Aligned_cols=202  Identities=20%  Similarity=0.152  Sum_probs=165.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCc------------------
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGI------------------   63 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~------------------   63 (316)
                      .||||.|++.|+.++|++|++.|+++.   ..+..|.||||.|+..|+.+++++|+++|+++                  
T Consensus        36 ~tpL~~A~~~g~~~iv~~Ll~~Ga~~n---~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~  112 (434)
T PHA02874         36 TTPLIDAIRSGDAKIVELFIKHGADIN---HINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILD  112 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHH
Confidence            699999999999999999999999874   44888999999999999999999999887653                  


Q ss_pred             ----ccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCcc
Q 036662           64 ----AGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSE  139 (316)
Q Consensus        64 ----~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~  139 (316)
                          .+.+|..|.||||+|+..|+.++       +++|++ .+.+++.+|..|+||||+|+.+|+.+++++|+++|++  
T Consensus       113 ~g~d~n~~~~~g~T~Lh~A~~~~~~~~-------v~~Ll~-~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~--  182 (434)
T PHA02874        113 CGIDVNIKDAELKTFLHYAIKKGDLES-------IKMLFE-YGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAY--  182 (434)
T ss_pred             CcCCCCCCCCCCccHHHHHHHCCCHHH-------HHHHHh-CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC--
Confidence                25678899999999999999888       777777 6777777777778888888887778888888877777  


Q ss_pred             ccccccCCCCcHHHHHHhcCCcceec--------------------------------------ccccccCCCCCHHHHH
Q 036662          140 FLNAKDDYGMSILHLAVADKQIEYYN--------------------------------------QSECCYANGFTAWDIL  181 (316)
Q Consensus       140 ~~~~~d~~g~t~Lh~A~~~~~~~~v~--------------------------------------~~~~~~~~g~TpL~~a  181 (316)
                       ++.+|..|+||||+|+..|+.++++                                      +++.+|..|+||||+|
T Consensus       183 -~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A  261 (434)
T PHA02874        183 -ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHA  261 (434)
T ss_pred             -CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence             7777777777777777777776666                                      4566777888888888


Q ss_pred             HhccCCCcHHHHHHHHHHhCCCcccccCCcccccccccc
Q 036662          182 ANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQT  220 (316)
Q Consensus       182 ~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~  220 (316)
                      +..   ..+.+++++|+++|++.+.....+.+|...+..
T Consensus       262 ~~~---~~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~  297 (434)
T PHA02874        262 INP---PCDIDIIDILLYHKADISIKDNKGENPIDTAFK  297 (434)
T ss_pred             Hhc---CCcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence            761   236789999999999999888888888876543

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-33  Score=260.43  Aligned_cols=190  Identities=22%  Similarity=0.133  Sum_probs=135.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      +++||.|++.|+.++++.|++.|.+++   ..+..|.||||+|+..|+.+++++|+++|+++ +..+..+.||||.|+..
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n---~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~   78 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPN---FEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEE   78 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCC---ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHC
Confidence            567888888888888888888877663   34667888888888888888888888888876 66677777888888877


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCc
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQI  161 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  161 (316)
                      |+.++       ++.|++......+..+.+|+||||+|+..|+.+++++|+++|++   ++.+|.+|.||||+|+..|+.
T Consensus        79 g~~~~-------v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad---~~~~~~~g~tpLh~A~~~~~~  148 (413)
T PHA02875         79 GDVKA-------VEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD---PDIPNTDKFSPLHLAVMMGDI  148 (413)
T ss_pred             CCHHH-------HHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC---CCCCCCCCCCHHHHHHHcCCH
Confidence            77776       77777633333344456677777777777777777777777776   666777777777777777777


Q ss_pred             ceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccC
Q 036662          162 EYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQ  209 (316)
Q Consensus       162 ~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~  209 (316)
                      ++++       +++.+|..|.||||+|+.    .++.+++++|+++|++++....
T Consensus       149 ~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~----~g~~eiv~~Ll~~ga~~n~~~~  199 (413)
T PHA02875        149 KGIELLIDHKACLDIEDCCGCTPLIIAMA----KGDIAICKMLLDSGANIDYFGK  199 (413)
T ss_pred             HHHHHHHhcCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhCCCCCCcCCC
Confidence            6666       566667777777777776    6667777777777776655433

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=7.3e-34  Score=266.07  Aligned_cols=197  Identities=23%  Similarity=0.197  Sum_probs=171.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHH------------------------------
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKD------------------------------   51 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~------------------------------   51 (316)
                      .||||.|++.|+.++|+.|+++|+++   +.+|..|.||||+||..|+.+                              
T Consensus        38 ~tPLh~A~~~g~~e~vk~Ll~~gadv---n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~  114 (477)
T PHA02878         38 FIPLHQAVEARNLDVVKSLLTRGHNV---NQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNV  114 (477)
T ss_pred             cchHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCH
Confidence            48999999999999999999999987   445899999999999876543                              


Q ss_pred             ----------------------------------HHHHHHhhCCCcccccCCC-CCcHHHHHHHcCCcccccccHHHHHH
Q 036662           52 ----------------------------------FAKEILRQKPGIAGELDSR-KSSALHIASQKRYVGMKSNRIDVLEE   96 (316)
Q Consensus        52 ----------------------------------~v~~Ll~~~~~~~~~~d~~-g~tpLh~A~~~g~~~~~~~~~~iv~~   96 (316)
                                                        ++++|+++|+++ +..|.. |.||||+|+..|+.++       +++
T Consensus       115 ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadi-n~~~~~~g~tpLh~A~~~~~~~i-------v~~  186 (477)
T PHA02878        115 EIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI-NMKDRHKGNTALHYATENKDQRL-------TEL  186 (477)
T ss_pred             HHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCC-CccCCCCCCCHHHHHHhCCCHHH-------HHH
Confidence                                              666677778887 777777 9999999999998888       999


Q ss_pred             HHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhc-CCcceec-------ccc
Q 036662           97 LVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVAD-KQIEYYN-------QSE  168 (316)
Q Consensus        97 Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~-~~~~~v~-------~~~  168 (316)
                      |++ .+++++.+|..|+||||+|+..|+.+++++|++.|++   ++.+|..|+||||+|+.. ++.++++       +++
T Consensus       187 Ll~-~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~---in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn  262 (477)
T PHA02878        187 LLS-YGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS---TDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVN  262 (477)
T ss_pred             HHH-CCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCC
Confidence            999 8888999999999999999999999999999999999   999999999999999975 6788877       788


Q ss_pred             cccC-CCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCccccccccc
Q 036662          169 CCYA-NGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQ  219 (316)
Q Consensus       169 ~~~~-~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~  219 (316)
                      .++. .|.||||+|..      ..+++++|+++|++++.....+.+|...+.
T Consensus       263 ~~~~~~g~TpLh~A~~------~~~~v~~Ll~~gadin~~d~~g~TpL~~A~  308 (477)
T PHA02878        263 AKSYILGLTALHSSIK------SERKLKLLLEYGADINSLNSYKLTPLSSAV  308 (477)
T ss_pred             ccCCCCCCCHHHHHcc------CHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            8876 79999999943      467899999999999998888888876554

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.9e-33  Score=257.71  Aligned_cols=189  Identities=17%  Similarity=0.136  Sum_probs=175.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      +.||||.|+..|+.++++.|++.|+++.   ..+..+.||||+|+..|+.++++.|++.|++..+..+..|.||||+|+.
T Consensus        35 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~---~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~  111 (413)
T PHA02875         35 GISPIKLAMKFRDSEAIKLLMKHGAIPD---VKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATI  111 (413)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCcc---ccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHH
Confidence            4799999999999999999999998763   3477899999999999999999999999998867778899999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ  160 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  160 (316)
                      .|+.++       +++|++ .+++++.++..|+||||+|+..|+.+++++|+++|++   ++.+|..|+||||+|+..|+
T Consensus       112 ~~~~~i-------v~~Ll~-~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~TpL~~A~~~g~  180 (413)
T PHA02875        112 LKKLDI-------MKLLIA-RGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC---LDIEDCCGCTPLIIAMAKGD  180 (413)
T ss_pred             hCCHHH-------HHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCCCCCHHHHHHHcCC
Confidence            999988       999999 8999999999999999999999999999999999999   99999999999999999999


Q ss_pred             cceec-------ccccccCCCC-CHHHHHHhccCCCcHHHHHHHHHHhCCCcccc
Q 036662          161 IEYYN-------QSECCYANGF-TAWDILANSKRKMKDWEIGELLRRAGAISAKE  207 (316)
Q Consensus       161 ~~~v~-------~~~~~~~~g~-TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~  207 (316)
                      .++++       +++..+..|. ||+|+|+.    .++.+++++|+++|++.+..
T Consensus       181 ~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~----~~~~~iv~~Ll~~gad~n~~  231 (413)
T PHA02875        181 IAICKMLLDSGANIDYFGKNGCVAALCYAIE----NNKIDIVRLFIKRGADCNIM  231 (413)
T ss_pred             HHHHHHHHhCCCCCCcCCCCCCchHHHHHHH----cCCHHHHHHHHHCCcCcchH
Confidence            99988       7888888875 78999999    89999999999999998754

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=3.1e-33  Score=252.58  Aligned_cols=166  Identities=19%  Similarity=0.134  Sum_probs=156.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcChhhHHhhhcC-CCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            3 SKLYEAALAGSVTSLLEFLQKDRLILERAAMN-CPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      |+||+|+.+++++++++|+++|++++..   + .-+.||||||+++|+..+|++|+++|+|+ +.+|.+|.||||+|++.
T Consensus        80 tlLHWAAiNNrl~v~r~li~~gadvn~~---gG~l~stPLHWAar~G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~  155 (600)
T KOG0509|consen   80 TLLHWAAINNRLDVARYLISHGADVNAI---GGVLGSTPLHWAARNGHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQF  155 (600)
T ss_pred             cceeHHHHcCcHHHHHHHHHcCCCcccc---CCCCCCCcchHHHHcCcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHh
Confidence            7899999999999999999999998544   4 66889999999999999999999999999 99999999999999999


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccccc-CCCCcHHHHHHhcCC
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKD-DYGMSILHLAVADKQ  160 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d-~~g~t~Lh~A~~~~~  160 (316)
                      |+...       +.+||. .+.+++.+|.+|+||||+|+.+|+...++.|++.|+.   ++..| ++|+||||+|+..|+
T Consensus       156 ~~~~~-------vayll~-~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~---~~~~d~~~g~TpLHwa~~~gN  224 (600)
T KOG0509|consen  156 GHTAL-------VAYLLS-KGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS---LLLTDDNHGNTPLHWAVVGGN  224 (600)
T ss_pred             CchHH-------HHHHHH-hcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccc---ccccccccCCchHHHHHhcCC
Confidence            99999       999999 7799999999999999999999998889999999998   88887 999999999999999


Q ss_pred             cceec-------ccccccCCCCCHHHHHHh
Q 036662          161 IEYYN-------QSECCYANGFTAWDILAN  183 (316)
Q Consensus       161 ~~~v~-------~~~~~~~~g~TpL~~a~~  183 (316)
                      ...+.       +.+.+|.+|+||+++|.+
T Consensus       225 ~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~  254 (600)
T KOG0509|consen  225 LTAVKLLLEGGADLDKTNTNGKTPFDLAQE  254 (600)
T ss_pred             cceEehhhhcCCcccccccCCCCHHHHHHH
Confidence            99888       788889999999999988

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=8.9e-33  Score=254.89  Aligned_cols=184  Identities=11%  Similarity=0.071  Sum_probs=123.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcC--CHHHHHHHHhhCCCcccccCCCCCcHHHHHH
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLR--HKDFAKEILRQKPGIAGELDSRKSSALHIAS   79 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~   79 (316)
                      .||||+|++.|+.++|+.|+++|+++   +.+|..|+||||+|+..+  ..+++++|+++|+++....|..|.|||| |+
T Consensus        73 ~TpLh~Aa~~g~~eiv~lLL~~GAdi---n~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa  148 (446)
T PHA02946         73 NYPLHIASKINNNRIVAMLLTHGADP---NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-AC  148 (446)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCcCCC---CCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HH
Confidence            45555555555555555555555544   223555555555555443  2455555555555553234555555554 33


Q ss_pred             HcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcC--CHHHHHHHHhcCCCccccccccCCCCcHHHHHHh
Q 036662           80 QKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHN--QLEALKVLLENTDDSEFLNAKDDYGMSILHLAVA  157 (316)
Q Consensus        80 ~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~  157 (316)
                      ..|+.++       +++|++ .+++++.+|..|+||||+|+..+  +.+++++|+++|++   ++.+|.+|+||||+|+.
T Consensus       149 ~~~~~~v-------v~~Ll~-~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gad---in~~d~~G~TpLH~Aa~  217 (446)
T PHA02946        149 TDPSERV-------FKKIMS-IGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGIS---PSKPDHDGNTPLHIVCS  217 (446)
T ss_pred             HCCChHH-------HHHHHh-ccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHH
Confidence            3444444       888888 77888888888888888877654  46888888888888   88888888888888888


Q ss_pred             cC--Ccceec------ccccccCCCCCHHHHHHhccCCCcH-HHHHHHHHHhCCCc
Q 036662          158 DK--QIEYYN------QSECCYANGFTAWDILANSKRKMKD-WEIGELLRRAGAIS  204 (316)
Q Consensus       158 ~~--~~~~v~------~~~~~~~~g~TpL~~a~~~~~~~~~-~~i~~~Ll~~ga~~  204 (316)
                      .+  +.++++      ++|.+|..|.||||+|+.    .++ .+++++|+++|+..
T Consensus       218 ~~~~~~~iv~lLl~gadin~~d~~G~TpLh~A~~----~~~~~~~~~~Ll~~g~~~  269 (446)
T PHA02946        218 KTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIK----TLSPAHLINKLLSTSNVI  269 (446)
T ss_pred             cCCCcHHHHHHHHcCCCCCCCCCCCCCHHHHHHH----hCChHHHHHHHHhCCCCC
Confidence            75  555555      788888888888888887    444 57888888888754

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.5e-32  Score=257.22  Aligned_cols=210  Identities=16%  Similarity=0.087  Sum_probs=157.2

Q ss_pred             CCcHHHHHHHcC---CHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcC-CHHHHHHHHhhCCCcccccCCCCCcHHH
Q 036662            1 MESKLYEAALAG---SVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLR-HKDFAKEILRQKPGIAGELDSRKSSALH   76 (316)
Q Consensus         1 m~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~d~~g~tpLh   76 (316)
                      ++||||.|+..|   +.++++.|++.|++++   .++..|.||||+|+..| +.+++++|+++|+++ +.+|..|.||||
T Consensus        47 g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin---~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i-n~~~~~g~tpLh  122 (471)
T PHA03095         47 GKTPLHLYLHYSSEKVKDIVRLLLEAGADVN---APERCGFTPLHLYLYNATTLDVIKLLIKAGADV-NAKDKVGRTPLH  122 (471)
T ss_pred             CCCHHHHHHHhcCCChHHHHHHHHHCCCCCC---CCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence            367888888887   8888888888888773   34677888888888888 488888888888887 777888888888


Q ss_pred             HHHH--cCCccc----------------------------ccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhc--CC
Q 036662           77 IASQ--KRYVGM----------------------------KSNRIDVLEELVRARPLAASAPLIWVETILHLCVKH--NQ  124 (316)
Q Consensus        77 ~A~~--~g~~~~----------------------------~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~--g~  124 (316)
                      +|+.  .++.++                            ..+..+++++|++ .+.+++..|..|+||||+|+..  ++
T Consensus       123 ~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~-~g~~~~~~d~~g~t~Lh~~~~~~~~~  201 (471)
T PHA03095        123 VYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLID-AGADVYAVDDRFRSLLHHHLQSFKPR  201 (471)
T ss_pred             HHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHHCCCc
Confidence            8883  334444                            1223455666666 5555555566666666666643  45


Q ss_pred             HHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcc--eec-------ccccccCCCCCHHHHHHhccCCCcHHHHHH
Q 036662          125 LEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE--YYN-------QSECCYANGFTAWDILANSKRKMKDWEIGE  195 (316)
Q Consensus       125 ~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~--~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~  195 (316)
                      .++++.|++.|++   ++.+|..|+||||+|+..++..  +++       ++|.+|..|+||||+|+.    .++.++++
T Consensus       202 ~~i~~~Ll~~g~~---~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~----~~~~~~v~  274 (471)
T PHA03095        202 ARIVRELIRAGCD---PAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAV----FNNPRACR  274 (471)
T ss_pred             HHHHHHHHHcCCC---CcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH----cCCHHHHH
Confidence            6677777777777   7888888888888888887643  222       899999999999999999    88999999


Q ss_pred             HHHHhCCCcccccCCccccccccccCc
Q 036662          196 LLRRAGAISAKEMQQPATKVSITQTNS  222 (316)
Q Consensus       196 ~Ll~~ga~~~~~~~~~~~~~~~~~~~~  222 (316)
                      +|+++|++++.....+.+|...+....
T Consensus       275 ~LL~~gad~n~~~~~g~tpl~~A~~~~  301 (471)
T PHA03095        275 RLIALGADINAVSSDGNTPLSLMVRNN  301 (471)
T ss_pred             HHHHcCCCCcccCCCCCCHHHHHHHhC
Confidence            999999999998888888887655443

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.4e-32  Score=235.21  Aligned_cols=188  Identities=13%  Similarity=0.010  Sum_probs=163.7

Q ss_pred             cCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCccccccc
Q 036662           11 AGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNR   90 (316)
Q Consensus        11 ~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~   90 (316)
                      .++.+++++|++++++     .+|.+|+||||+|+..|+.++++.|++.|+++ +..  +|.||||+|+..|+.++    
T Consensus         9 ~~~~~~~~~Lis~~a~-----~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~-n~~--d~~TpLh~Aa~~g~~ei----   76 (284)
T PHA02791          9 WKSKQLKSFLSSKDAF-----KADVHGHSALYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKI----   76 (284)
T ss_pred             cCHHHHHHHHHhCCCC-----CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCC-cCC--CCCCHHHHHHHCCCHHH----
Confidence            4778999999999874     35889999999999999999999999999987 554  47899999999999988    


Q ss_pred             HHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCC-cHHHHHHhcCCcceec----
Q 036662           91 IDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGM-SILHLAVADKQIEYYN----  165 (316)
Q Consensus        91 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~-t~Lh~A~~~~~~~~v~----  165 (316)
                         +++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++   ++.++..|. ||||+|+..|+.++++    
T Consensus        77 ---V~lLL~-~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad---in~~~~~g~~TpL~~Aa~~g~~eivk~LL~  149 (284)
T PHA02791         77 ---VKILLF-SGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR---LMFYGKTGWKTSFYHAVMLNDVSIVSYFLS  149 (284)
T ss_pred             ---HHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---cCccCCCCCcHHHHHHHHcCCHHHHHHHHh
Confidence               999999 8899999999999999999999999999999999999   999999885 8999999999999998    


Q ss_pred             -cccccc-CCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCcccc-ccccccC
Q 036662          166 -QSECCY-ANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATK-VSITQTN  221 (316)
Q Consensus       166 -~~~~~~-~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~-~~~~~~~  221 (316)
                       ..+..| ..|.||||+|+.    .++.+++++|+++|++++.....+.++ +..+-..
T Consensus       150 ~~~~~~d~~~g~TpLh~Aa~----~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~  204 (284)
T PHA02791        150 EIPSTFDLAILLSCIHITIK----NGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDN  204 (284)
T ss_pred             cCCcccccccCccHHHHHHH----cCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHc
Confidence             223334 358999999999    899999999999999988776655544 4333333

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3e-32  Score=255.75  Aligned_cols=205  Identities=23%  Similarity=0.243  Sum_probs=124.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHH-----HHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHH
Q 036662            3 SKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHV-----AALLRHKDFAKEILRQKPGIAGELDSRKSSALHI   77 (316)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~-----A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~   77 (316)
                      ||||.|+..|+.++|+.|+++|.++.   ..+..|.||||+     |+..|+.+++++|+++|+++ +..|..|.||||+
T Consensus        37 t~L~~A~~~~~~~ivk~Ll~~g~~~~---~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~  112 (480)
T PHA03100         37 LPLYLAKEARNIDVVKILLDNGADIN---SSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNNGITPLLY  112 (480)
T ss_pred             hhhhhhhccCCHHHHHHHHHcCCCCC---CccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCchhhH
Confidence            55555555555555555555555442   224445555555     55555555555555555555 4555555555555


Q ss_pred             HH--HcCCccc--------------------------ccc--cHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHH
Q 036662           78 AS--QKRYVGM--------------------------KSN--RIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEA  127 (316)
Q Consensus        78 A~--~~g~~~~--------------------------~~~--~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~  127 (316)
                      |+  ..|+.++                          ..|  +.+++++|++ .+.+++.+|..|.||||+|+..|+.++
T Consensus       113 A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~-~g~din~~d~~g~tpL~~A~~~~~~~i  191 (480)
T PHA03100        113 AISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLID-KGVDINAKNRYGYTPLHIAVEKGNIDV  191 (480)
T ss_pred             HHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHH-CCCCcccccCCCCCHHHHHHHhCCHHH
Confidence            55  4444444                          111  2233666666 556666666666666666666666666


Q ss_pred             HHHHHhcCCCccccccccCCC------CcHHHHHHhcCC--cceec-------ccccccCCCCCHHHHHHhccCCCcHHH
Q 036662          128 LKVLLENTDDSEFLNAKDDYG------MSILHLAVADKQ--IEYYN-------QSECCYANGFTAWDILANSKRKMKDWE  192 (316)
Q Consensus       128 v~~Ll~~g~~~~~~~~~d~~g------~t~Lh~A~~~~~--~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~  192 (316)
                      +++|+++|++   ++..+..|      .||||+|+..++  .++++       +++.+|..|.||||+|+.    .++.+
T Consensus       192 v~~Ll~~ga~---~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~----~~~~~  264 (480)
T PHA03100        192 IKFLLDNGAD---INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVY----NNNPE  264 (480)
T ss_pred             HHHHHHcCCC---ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH----cCCHH
Confidence            6666666666   66666666      666666666666  55555       567777778888888877    67777


Q ss_pred             HHHHHHHhCCCcccccCCccccccccc
Q 036662          193 IGELLRRAGAISAKEMQQPATKVSITQ  219 (316)
Q Consensus       193 i~~~Ll~~ga~~~~~~~~~~~~~~~~~  219 (316)
                      ++++|+++|++++.....+.+|...+.
T Consensus       265 iv~~Ll~~gad~n~~d~~g~tpl~~A~  291 (480)
T PHA03100        265 FVKYLLDLGANPNLVNKYGDTPLHIAI  291 (480)
T ss_pred             HHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence            888888888877777766666665443

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.6e-32  Score=256.17  Aligned_cols=187  Identities=24%  Similarity=0.220  Sum_probs=169.1

Q ss_pred             CCcHHHHHH--HcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcC--CHHHHHHHHhhCCCcccccCCCCCcHHH
Q 036662            1 MESKLYEAA--LAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLR--HKDFAKEILRQKPGIAGELDSRKSSALH   76 (316)
Q Consensus         1 m~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~tpLh   76 (316)
                      +.||||.|+  ..|+.++++.|+++|+++   +..+..|.||||+|+..|  +.+++++|+++|+++ +.+|..|.||||
T Consensus       106 g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~di-n~~d~~g~tpL~  181 (480)
T PHA03100        106 GITPLLYAISKKSNSYSIVEYLLDNGANV---NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI-NAKNRYGYTPLH  181 (480)
T ss_pred             CCchhhHHHhcccChHHHHHHHHHcCCCC---CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCc-ccccCCCCCHHH
Confidence            368888888  888888888888888876   334788888888888888  888888888888887 778888888888


Q ss_pred             HHHHcCCcccccccHHHHHHHHHhCCCCcccccCCC------CcHHHHHHhcCC--HHHHHHHHhcCCCccccccccCCC
Q 036662           77 IASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWV------ETILHLCVKHNQ--LEALKVLLENTDDSEFLNAKDDYG  148 (316)
Q Consensus        77 ~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g------~t~Lh~A~~~g~--~~~v~~Ll~~g~~~~~~~~~d~~g  148 (316)
                      +|+..|+.++       +++|++ .+++++..+..|      .||||+|+..|+  .+++++|+++|++   +|.+|..|
T Consensus       182 ~A~~~~~~~i-------v~~Ll~-~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~d---in~~d~~g  250 (480)
T PHA03100        182 IAVEKGNIDV-------IKFLLD-NGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVP---INIKDVYG  250 (480)
T ss_pred             HHHHhCCHHH-------HHHHHH-cCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCC---CCCCCCCC
Confidence            8888888877       999999 889999888888      999999999999  9999999999999   99999999


Q ss_pred             CcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCccc
Q 036662          149 MSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAK  206 (316)
Q Consensus       149 ~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~  206 (316)
                      +||||+|+..|+.++++       +++.+|..|.||+++|+.    .++.+++++|+++|++.+.
T Consensus       251 ~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~----~~~~~iv~~Ll~~g~~i~~  311 (480)
T PHA03100        251 FTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAIL----NNNKEIFKLLLNNGPSIKT  311 (480)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHH----hCCHHHHHHHHhcCCCHHH
Confidence            99999999999999998       899999999999999999    8999999999999998764

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=6.7e-32  Score=250.02  Aligned_cols=207  Identities=16%  Similarity=0.213  Sum_probs=181.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      |+..|+.|+..|+.+.|+.|++.++...  +..+..|.||||.|+..|+.++|++|+++|+++ +..+..|.||||.|+.
T Consensus         1 ~~~~l~~ai~~gd~~~v~~ll~~~~~~~--n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~-n~~~~~~~t~L~~A~~   77 (434)
T PHA02874          1 ASQDLRMCIYSGDIEAIEKIIKNKGNCI--NISVDETTTPLIDAIRSGDAKIVELFIKHGADI-NHINTKIPHPLLTAIK   77 (434)
T ss_pred             CcHHHHHHHhcCCHHHHHHHHHcCCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHH
Confidence            5678999999999999999998765422  334778999999999999999999999999998 8889999999999999


Q ss_pred             cCCccc----------------ccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccc
Q 036662           81 KRYVGM----------------KSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAK  144 (316)
Q Consensus        81 ~g~~~~----------------~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~  144 (316)
                      .|+.++                .....++++.|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|++   ++.+
T Consensus        78 ~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~-~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad---~n~~  153 (434)
T PHA02874         78 IGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILD-CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD---VNIE  153 (434)
T ss_pred             cCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHH-CcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC---CCCc
Confidence            999887                1122344445555 5667788899999999999999999999999999999   9999


Q ss_pred             cCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCccccccc
Q 036662          145 DDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSI  217 (316)
Q Consensus       145 d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~  217 (316)
                      |.+|+||||+|+..++.++++       +++..|..|.||||+|+.    .++.+++++|+++|++.......+.++...
T Consensus       154 d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~----~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~  229 (434)
T PHA02874        154 DDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAE----YGDYACIKLLIDHGNHIMNKCKNGFTPLHN  229 (434)
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhCCCCCcCCCCCCCCHHHH
Confidence            999999999999999999988       788999999999999999    899999999999999988777777776654


Q ss_pred             c
Q 036662          218 T  218 (316)
Q Consensus       218 ~  218 (316)
                      +
T Consensus       230 A  230 (434)
T PHA02874        230 A  230 (434)
T ss_pred             H
Confidence            3

>PHA02946 ankyin-like protein; Provisional

Probab=99.98  E-value=2.5e-31  Score=245.28  Aligned_cols=203  Identities=13%  Similarity=0.071  Sum_probs=172.7

Q ss_pred             CcHHHHHH--HcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHH
Q 036662            2 ESKLYEAA--LAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIAS   79 (316)
Q Consensus         2 ~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~   79 (316)
                      .++||.++  ..++.++|+.|+++|++++   .+|..|+||||+|+..|+.++|++|+++|+++ +.+|..|.||||+|+
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn---~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdi-n~~d~~g~TpLh~A~  113 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYSPN---ETDDDGNYPLHIASKINNNRIVAMLLTHGADP-NACDKQHKTPLYYLS  113 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCCCC---ccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHH
Confidence            36888876  4457899999999999884   45999999999999999999999999999998 899999999999998


Q ss_pred             HcCCcccccccHHHHHHHHHhCCCCccc-ccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhc
Q 036662           80 QKRYVGMKSNRIDVLEELVRARPLAASA-PLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVAD  158 (316)
Q Consensus        80 ~~g~~~~~~~~~~iv~~Ll~~~~~~~~~-~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~  158 (316)
                      ..++.     ..+++++|++ .+++++. .|.+|.|||| |+..|+.+++++|++.|++   ++.+|..|+||||+|+..
T Consensus       114 ~~~~~-----~~e~v~lLl~-~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad---~~~~d~~G~t~Lh~A~~~  183 (446)
T PHA02946        114 GTDDE-----VIERINLLVQ-YGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFE---ARIVDKFGKNHIHRHLMS  183 (446)
T ss_pred             HcCCc-----hHHHHHHHHH-cCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccc---ccccCCCCCCHHHHHHHh
Confidence            76642     1244999999 8888874 6899999998 6677999999999999999   999999999999999987


Q ss_pred             CCc--ceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCccccccccccC
Q 036662          159 KQI--EYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTN  221 (316)
Q Consensus       159 ~~~--~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~  221 (316)
                      ++.  ++++       +++.+|.+|.||||+|+...  .+..+++++|++ |++.+.....+.+|+......
T Consensus       184 ~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~--~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~  252 (446)
T PHA02946        184 DNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKT--VKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKT  252 (446)
T ss_pred             cCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC--CCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHh
Confidence            654  4554       89999999999999999821  237789999885 999999999999988655443

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.3e-31  Score=248.12  Aligned_cols=193  Identities=17%  Similarity=0.161  Sum_probs=174.4

Q ss_pred             CCcHHHHHHHcC-CHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHH--hcCCHHHHHHHHhhCCCcccccCCCCCcHHHH
Q 036662            1 MESKLYEAALAG-SVTSLLEFLQKDRLILERAAMNCPSETPLHVAA--LLRHKDFAKEILRQKPGIAGELDSRKSSALHI   77 (316)
Q Consensus         1 m~t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~   77 (316)
                      +.||||.|+..| +.++++.|+++|+++   +.+|..|+||||+|+  ..++.+++++|+++|+++ +..|..|.||||+
T Consensus        83 g~TpLh~A~~~~~~~~iv~lLl~~ga~i---n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~  158 (471)
T PHA03095         83 GFTPLHLYLYNATTLDVIKLLIKAGADV---NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAV  158 (471)
T ss_pred             CCCHHHHHHHcCCcHHHHHHHHHcCCCC---CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHH
Confidence            479999999999 599999999999987   445889999999999  556899999999999998 8889999999999


Q ss_pred             HHHcCCcc--c----------------------------ccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCH--
Q 036662           78 ASQKRYVG--M----------------------------KSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQL--  125 (316)
Q Consensus        78 A~~~g~~~--~----------------------------~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~--  125 (316)
                      |+..+...  +                            ..+..++++.|++ .+.+++.+|..|+||||+|+..|+.  
T Consensus       159 a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~-~g~~~~~~d~~g~tpLh~Aa~~~~~~~  237 (471)
T PHA03095        159 LLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIR-AGCDPAATDMLGNTPLHSMATGSSCKR  237 (471)
T ss_pred             HHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHH-cCCCCcccCCCCCCHHHHHHhcCCchH
Confidence            98877432  2                            3467889999999 8999999999999999999999974  


Q ss_pred             HHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHH
Q 036662          126 EALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLR  198 (316)
Q Consensus       126 ~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll  198 (316)
                      .+++.|++.|++   +|.+|.+|+||||+|+..|+.++++       +++.+|.+|+||||+|+.    .++.++++.|+
T Consensus       238 ~~v~~ll~~g~d---in~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~----~~~~~~v~~LL  310 (471)
T PHA03095        238 SLVLPLLIAGIS---INARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVR----NNNGRAVRAAL  310 (471)
T ss_pred             HHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH----hCCHHHHHHHH
Confidence            688999999999   9999999999999999999999998       899999999999999999    89999999999


Q ss_pred             HhCCCcc
Q 036662          199 RAGAISA  205 (316)
Q Consensus       199 ~~ga~~~  205 (316)
                      ++|++..
T Consensus       311 ~~~~~~~  317 (471)
T PHA03095        311 AKNPSAE  317 (471)
T ss_pred             HhCCCHH
Confidence            9998874

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=5.4e-31  Score=251.28  Aligned_cols=204  Identities=13%  Similarity=0.101  Sum_probs=158.3

Q ss_pred             CCcHHHHHHHcCC--HHHHHHHHHcChhhHHhhhcCCCCCCHHHHH----------------------------------
Q 036662            1 MESKLYEAALAGS--VTSLLEFLQKDRLILERAAMNCPSETPLHVA----------------------------------   44 (316)
Q Consensus         1 m~t~L~~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A----------------------------------   44 (316)
                      ++||||.|++.|+  .++|+.|++.|+++   +.+|..|.||||+|                                  
T Consensus       212 G~TPLH~Aa~~g~~~~eIVklLLe~GADV---N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~  288 (764)
T PHA02716        212 LITPLHTYLITGNVCASVIKKIIELGGDM---DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSY  288 (764)
T ss_pred             CCCHHHHHHHcCCCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHH
Confidence            4678888888874  47788888888776   34477788888764                                  


Q ss_pred             ---HhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH--cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHH
Q 036662           45 ---ALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ--KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLC  119 (316)
Q Consensus        45 ---~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~--~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  119 (316)
                         +..|+.++++.|+++|+++ +.+|..|+||||+|+.  .++.++       +++|++ .+++++.+|..|+||||+|
T Consensus       289 i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa~~~~~~eI-------VklLLe-~GADIN~kD~~G~TPLH~A  359 (764)
T PHA02716        289 ITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYILRHNISTDI-------IKLLHE-YGNDLNEPDNIGNTVLHTY  359 (764)
T ss_pred             HHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHHHhCCCchH-------HHHHHH-cCCCCccCCCCCCCHHHHH
Confidence               3446777888888888887 7778888888887654  345566       999999 8999999999999999998


Q ss_pred             Hh--------------cCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHh----cCCcceec----------------
Q 036662          120 VK--------------HNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVA----DKQIEYYN----------------  165 (316)
Q Consensus       120 ~~--------------~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~----~~~~~~v~----------------  165 (316)
                      +.              .++.+++++|+++|++   ++.+|..|+||||.++.    .++.++++                
T Consensus       360 ~~~lav~~~ld~~~~~~~~~eVVklLL~~GAD---In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~  436 (764)
T PHA02716        360 LSMLSVVNILDPETDNDIRLDVIQCLISLGAD---ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRIL  436 (764)
T ss_pred             HHhhhhhccccccccccChHHHHHHHHHCCCC---CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhh
Confidence            75              3789999999999999   99999999999994221    11111110                


Q ss_pred             ----------------------------------------------------ccccccCCCCCHHHHHHhccCCCcH---
Q 036662          166 ----------------------------------------------------QSECCYANGFTAWDILANSKRKMKD---  190 (316)
Q Consensus       166 ----------------------------------------------------~~~~~~~~g~TpL~~a~~~~~~~~~---  190 (316)
                                                                          ++|..|..|+||||+|+.    .++   
T Consensus       437 q~ll~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~----~g~~~~  512 (764)
T PHA02716        437 QDLLIRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSII----SHTNAN  512 (764)
T ss_pred             hhhhhccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHH----cCCccc
Confidence                                                                346678899999999998    444   


Q ss_pred             --HHHHHHHHHhCCCcccccCCccccccccccCcc
Q 036662          191 --WEIGELLRRAGAISAKEMQQPATKVSITQTNSL  223 (316)
Q Consensus       191 --~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  223 (316)
                        .+++++|++.|++.+.....+.+|+..+..+.+
T Consensus       513 v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~  547 (764)
T PHA02716        513 IVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNR  547 (764)
T ss_pred             hhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCC
Confidence              366799999999999999999999876665543

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=9.5e-31  Score=218.16  Aligned_cols=164  Identities=13%  Similarity=0.143  Sum_probs=145.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcC--CHHHHHHHHhhCCCcccccC-CCCCcHHHHH
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLR--HKDFAKEILRQKPGIAGELD-SRKSSALHIA   78 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A   78 (316)
                      .||||.|+..|+.+.|+.|++..      +..|..|.||||+|+..+  +.+++++|+++|+++ +.++ ..|.||||+|
T Consensus        22 ~~pL~~A~~~~~~~~vk~Li~~~------n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~TpLh~a   94 (209)
T PHA02859         22 CNPLFYYVEKDDIEGVKKWIKFV------NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSALHHY   94 (209)
T ss_pred             CcHHHHHHHhCcHHHHHHHHHhh------hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCHHHHH
Confidence            58999999999999999999752      334889999999999865  899999999999999 7776 5899999998


Q ss_pred             HHcC---CcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHh--cCCHHHHHHHHhcCCCccccccccCCCCcHHH
Q 036662           79 SQKR---YVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVK--HNQLEALKVLLENTDDSEFLNAKDDYGMSILH  153 (316)
Q Consensus        79 ~~~g---~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~--~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh  153 (316)
                      +..+   +.++       +++|++ ++++++.+|..|+||||+|+.  .++.+++++|+++|++   ++.+|.+|+||||
T Consensus        95 ~~~~~~~~~ei-------v~~Ll~-~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad---in~~d~~g~t~Lh  163 (209)
T PHA02859         95 LSFNKNVEPEI-------LKILID-SGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS---FLNKDFDNNNILY  163 (209)
T ss_pred             HHhCccccHHH-------HHHHHH-CCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC---cccccCCCCcHHH
Confidence            8653   4455       999999 999999999999999999986  4689999999999999   9999999999999


Q ss_pred             H-HHhcCCcceec-------ccccccCCCCCHHHHHHh
Q 036662          154 L-AVADKQIEYYN-------QSECCYANGFTAWDILAN  183 (316)
Q Consensus       154 ~-A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~  183 (316)
                      . |+..++.++++       +++.+|..|+||||+|..
T Consensus       164 ~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~  201 (209)
T PHA02859        164 SYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKF  201 (209)
T ss_pred             HHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhh
Confidence            5 56678888887       899999999999999987

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.97  E-value=6.4e-31  Score=250.77  Aligned_cols=196  Identities=15%  Similarity=0.092  Sum_probs=164.6

Q ss_pred             CCcHHHHHHH--cCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCC--HHHHHHHHhhCCCcccccCCCCCcHHH
Q 036662            1 MESKLYEAAL--AGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRH--KDFAKEILRQKPGIAGELDSRKSSALH   76 (316)
Q Consensus         1 m~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~--~~~v~~Ll~~~~~~~~~~d~~g~tpLh   76 (316)
                      ++||||.|+.  .++.+++++|+++|++++   .+|..|.||||+|+..|+  .++|++|+++|+++ +.+|..|+||||
T Consensus       177 G~TpLH~A~~n~~~~~eIVklLLe~GADVN---~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADV-N~kD~~G~TPLh  252 (764)
T PHA02716        177 GYGILHAYLGNMYVDIDILEWLCNNGVNVN---LQNNHLITPLHTYLITGNVCASVIKKIIELGGDM-DMKCVNGMSPIM  252 (764)
T ss_pred             CCcHHHHHHHhccCCHHHHHHHHHcCCCCC---CCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence            4699999865  468999999999999884   458999999999999995  59999999999998 899999999999


Q ss_pred             HHHH---cCCccc---------------------------ccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHh--cCC
Q 036662           77 IASQ---KRYVGM---------------------------KSNRIDVLEELVRARPLAASAPLIWVETILHLCVK--HNQ  124 (316)
Q Consensus        77 ~A~~---~g~~~~---------------------------~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~--~g~  124 (316)
                      +|+.   .++.++                           ..|+.+++++|++ .+++++.+|..|+||||+|+.  +++
T Consensus       253 ~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe-~GAdIN~kD~~G~TPLH~Aaa~~~~~  331 (764)
T PHA02716        253 TYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQ-PGVKLHYKDSAGRTCLHQYILRHNIS  331 (764)
T ss_pred             HHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHh-CCCceeccCCCCCCHHHHHHHHhCCC
Confidence            8863   222221                           3477888999999 889999999999999999874  468


Q ss_pred             HHHHHHHHhcCCCccccccccCCCCcHHHHHHhc--------------CCcceec-------ccccccCCCCCHHHHHHh
Q 036662          125 LEALKVLLENTDDSEFLNAKDDYGMSILHLAVAD--------------KQIEYYN-------QSECCYANGFTAWDILAN  183 (316)
Q Consensus       125 ~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~--------------~~~~~v~-------~~~~~~~~g~TpL~~a~~  183 (316)
                      .+++++|+++|++   +|.+|..|+||||+|+..              ++.++++       +++.+|..|+||||.++.
T Consensus       332 ~eIVklLLe~GAD---IN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~  408 (764)
T PHA02716        332 TDIIKLLHEYGND---LNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYIC  408 (764)
T ss_pred             chHHHHHHHcCCC---CccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHH
Confidence            9999999999999   999999999999998752              5667777       899999999999995332


Q ss_pred             ccCCCcHHHHHHHHHHhCCCc
Q 036662          184 SKRKMKDWEIGELLRRAGAIS  204 (316)
Q Consensus       184 ~~~~~~~~~i~~~Ll~~ga~~  204 (316)
                      .....+..+++++|++.|+..
T Consensus       409 ~a~n~~~~dIvklLis~~~~~  429 (764)
T PHA02716        409 TAQNYMYYDIIDCLISDKVLN  429 (764)
T ss_pred             HHHhcChHHHHHHHHhCcchh
Confidence            222257789999999988754

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=2.4e-30  Score=252.18  Aligned_cols=199  Identities=18%  Similarity=0.135  Sum_probs=172.0

Q ss_pred             CCcHHHHHHHcCCH-HHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcC-CHHHHHHHHhhCCCcccccCCCCCcHHHHH
Q 036662            1 MESKLYEAALAGSV-TSLLEFLQKDRLILERAAMNCPSETPLHVAALLR-HKDFAKEILRQKPGIAGELDSRKSSALHIA   78 (316)
Q Consensus         1 m~t~L~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A   78 (316)
                      ++||||.|+..|+. ++++.|++.|+++   +.+|..|.||||+|+..| +.++++.|++.|+++ +..|..|.||||+|
T Consensus       273 g~TpLh~Aa~~~~~~~iv~lLl~~gadi---n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadi-n~~d~~g~TpLh~A  348 (682)
T PHA02876        273 KNTPLHHASQAPSLSRLVPKLLERGADV---NAKNIKGETPLYLMAKNGYDTENIRTLIMLGADV-NAADRLYITPLHQA  348 (682)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCC-CCcccCCCcHHHHH
Confidence            46899999999886 5888888888877   345888999999999988 588999999999998 88899999999999


Q ss_pred             HHcCC-cccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHh
Q 036662           79 SQKRY-VGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVA  157 (316)
Q Consensus        79 ~~~g~-~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~  157 (316)
                      +..++ .++       ++.|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++   ++..+..|.||||+|+.
T Consensus       349 ~~~~~~~~i-------v~lLl~-~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad---~~~~~~~g~T~Lh~A~~  417 (682)
T PHA02876        349 STLDRNKDI-------VITLLE-LGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD---IEALSQKIGTALHFALC  417 (682)
T ss_pred             HHhCCcHHH-------HHHHHH-cCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---ccccCCCCCchHHHHHH
Confidence            88654 444       888888 9999999999999999999999999999999999999   99999999999999998


Q ss_pred             cCCc-ceec-------ccccccCCCCCHHHHHHhccCCCc-HHHHHHHHHHhCCCcccccCCcccccccc
Q 036662          158 DKQI-EYYN-------QSECCYANGFTAWDILANSKRKMK-DWEIGELLRRAGAISAKEMQQPATKVSIT  218 (316)
Q Consensus       158 ~~~~-~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~-~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~  218 (316)
                      .+.. .+++       ++|.+|..|+||||+|+.    .+ ..+++++|+++|++.+.....+.+|....
T Consensus       418 ~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~----~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a  483 (682)
T PHA02876        418 GTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACK----KNCKLDVIEMLLDNGADVNAINIQNQYPLLIA  483 (682)
T ss_pred             cCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHH----hCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            7654 3344       899999999999999998    44 67999999999999999888888776543

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.6e-30  Score=241.15  Aligned_cols=152  Identities=22%  Similarity=0.210  Sum_probs=135.1

Q ss_pred             cCCC-CCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCC
Q 036662           33 MNCP-SETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIW  111 (316)
Q Consensus        33 ~~~~-g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~  111 (316)
                      ++.. |.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.++       ++.|++ .+++++.+|..
T Consensus       163 ~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~i-------v~~Ll~-~ga~in~~d~~  233 (477)
T PHA02878        163 KDRHKGNTALHYATENKDQRLTELLLSYGANV-NIPDKTNNSPLHHAVKHYNKPI-------VHILLE-NGASTDARDKC  233 (477)
T ss_pred             cCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCCHHH-------HHHHHH-cCCCCCCCCCC
Confidence            3556 999999999999999999999999998 8899999999999999999988       999999 99999999999


Q ss_pred             CCcHHHHHHhc-CCHHHHHHHHhcCCCccccccccC-CCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHH
Q 036662          112 VETILHLCVKH-NQLEALKVLLENTDDSEFLNAKDD-YGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILA  182 (316)
Q Consensus       112 g~t~Lh~A~~~-g~~~~v~~Ll~~g~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~  182 (316)
                      |+||||+|+.. ++.+++++|+++|++   +|.++. .|+||||+|  .++.++++       ++|.+|..|.||||+|+
T Consensus       234 g~TpLh~A~~~~~~~~iv~~Ll~~gad---vn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~  308 (477)
T PHA02878        234 GNTPLHISVGYCKDYDILKLLLEHGVD---VNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAV  308 (477)
T ss_pred             CCCHHHHHHHhcCCHHHHHHHHHcCCC---CCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            99999999976 789999999999999   999886 899999999  45667776       89999999999999998


Q ss_pred             hccCCCcHHHHHHHHHHhC
Q 036662          183 NSKRKMKDWEIGELLRRAG  201 (316)
Q Consensus       183 ~~~~~~~~~~i~~~Ll~~g  201 (316)
                      ..   ....++.+.|+.++
T Consensus       309 ~~---~~~~~~~~~li~~~  324 (477)
T PHA02878        309 KQ---YLCINIGRILISNI  324 (477)
T ss_pred             HH---cCccchHHHHHHHH
Confidence            72   23445666666553

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=2.4e-30  Score=238.47  Aligned_cols=205  Identities=20%  Similarity=0.169  Sum_probs=127.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      .+|||.|+..|+.++++.|++.+.++   +..|..|.||||.||..++.|..+.|++.|+++ ...|.+|.+|+|.|++.
T Consensus       122 ~aplh~A~~~~~~s~L~~Ll~~~~dv---nl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~-~K~~~~~~~~iH~aa~s  197 (929)
T KOG0510|consen  122 NAPLHLAADSGNYSCLKLLLDYGADV---NLEDENGFTPLHLAARKNKVEAKKELINKGADP-CKSDIDGNFPIHEAARS  197 (929)
T ss_pred             cCchhhccccchHHHHHHHHHhcCCc---cccccCCCchhhHHHhcChHHHHHHHHhcCCCC-CcccCcCCchHHHHHHh
Confidence            45666666666666666666666555   334666777777777777777666677777766 55566666666666666


Q ss_pred             CCccc---------------------------------------------------------------------------
Q 036662           82 RYVGM---------------------------------------------------------------------------   86 (316)
Q Consensus        82 g~~~~---------------------------------------------------------------------------   86 (316)
                      |..++                                                                           
T Consensus       198 ~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpL  277 (929)
T KOG0510|consen  198 GSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPL  277 (929)
T ss_pred             cchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchH
Confidence            66555                                                                           


Q ss_pred             ----ccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcc
Q 036662           87 ----KSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE  162 (316)
Q Consensus        87 ----~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~  162 (316)
                          .+|+++.++.|+. .+++++.++.++.||||.|+.+|+.++|+-|++ -.+-.+.|..|..|+||||+|+..|+..
T Consensus       278 H~a~r~G~~~svd~Ll~-~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~-~~~~rllne~D~~g~tpLHlaa~~gH~~  355 (929)
T KOG0510|consen  278 HYAARQGGPESVDNLLG-FGASINSKNKDEESPLHFAAIYGRINTVERLLQ-ESDTRLLNESDLHGMTPLHLAAKSGHDR  355 (929)
T ss_pred             HHHHHcCChhHHHHHHH-cCCcccccCCCCCCchHHHHHcccHHHHHHHHh-CcCccccccccccCCCchhhhhhcCHHH
Confidence                4444455555555 555555555555666666666666665555555 1222345666666666666666666666


Q ss_pred             eec--------ccc--cccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCcccccc
Q 036662          163 YYN--------QSE--CCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVS  216 (316)
Q Consensus       163 ~v~--------~~~--~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~  216 (316)
                      +++        ..+  ..|.+|.||||.|+.    +++..+++.|+.+|++....+.++.+..+
T Consensus       356 v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~----~g~~~av~~Li~~Ga~I~~~n~~g~SA~~  415 (929)
T KOG0510|consen  356 VVQLLLNKGALFLNMSEADSDGNTALHLAAK----YGNTSAVQKLISHGADIGVKNKKGKSAFD  415 (929)
T ss_pred             HHHHHHhcChhhhcccccccCCchhhhHHHH----hccHHHHHHHHHcCCceeecccccccccc
Confidence            665        222  337777777777777    77777778888888877555554444443

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=8.2e-30  Score=248.47  Aligned_cols=196  Identities=21%  Similarity=0.140  Sum_probs=125.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCC--------------------
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKP--------------------   61 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~--------------------   61 (316)
                      +||||.|++.|+.++|++|+++|+++.   ..+..|.||||+|+..|+.++++.|++.++                    
T Consensus       179 ~TpLh~Aa~~G~~~iv~~LL~~Gad~n---~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~  255 (682)
T PHA02876        179 ITPIHYAAERGNAKMVNLLLSYGADVN---IIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLET  255 (682)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCcC---ccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHH
Confidence            466666666666666666666666552   235566666666666666665555544332                    


Q ss_pred             ---------CcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcC-CHHHHHHH
Q 036662           62 ---------GIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHN-QLEALKVL  131 (316)
Q Consensus        62 ---------~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g-~~~~v~~L  131 (316)
                               ++ +..|..|.||||+|+..|+.+      +++++|++ .+++++..|.+|+||||+|+.+| +.+++++|
T Consensus       256 ~~~Ll~~g~~v-n~~d~~g~TpLh~Aa~~~~~~------~iv~lLl~-~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~L  327 (682)
T PHA02876        256 SLLLYDAGFSV-NSIDDCKNTPLHHASQAPSLS------RLVPKLLE-RGADVNAKNIKGETPLYLMAKNGYDTENIRTL  327 (682)
T ss_pred             HHHHHHCCCCC-CCCCCCCCCHHHHHHhCCCHH------HHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHH
Confidence                     33 445566777777777666642      12666666 66677777777777777777776 46777777


Q ss_pred             HhcCCCccccccccCCCCcHHHHHHhcC-Ccceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCC
Q 036662          132 LENTDDSEFLNAKDDYGMSILHLAVADK-QIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAI  203 (316)
Q Consensus       132 l~~g~~~~~~~~~d~~g~t~Lh~A~~~~-~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~  203 (316)
                      +..|++   ++.+|..|+||||+|+..+ +.++++       +++.+|..|.||||+|+.    .++.+++++|+++|++
T Consensus       328 l~~gad---in~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~----~~~~~iv~~Ll~~gad  400 (682)
T PHA02876        328 IMLGAD---VNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAV----RNNVVIINTLLDYGAD  400 (682)
T ss_pred             HHcCCC---CCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCC
Confidence            777766   6666777777777766643 333333       677777777888887777    6677777777777777


Q ss_pred             cccccCCccccc
Q 036662          204 SAKEMQQPATKV  215 (316)
Q Consensus       204 ~~~~~~~~~~~~  215 (316)
                      .+.....+.++.
T Consensus       401 ~~~~~~~g~T~L  412 (682)
T PHA02876        401 IEALSQKIGTAL  412 (682)
T ss_pred             ccccCCCCCchH
Confidence            665554444443

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.97  E-value=6.3e-30  Score=240.32  Aligned_cols=202  Identities=16%  Similarity=0.134  Sum_probs=124.1

Q ss_pred             CcHHHHHHHcC--CHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcC------CHHHHHHHHhhCCCcccccCCCCCc
Q 036662            2 ESKLYEAALAG--SVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLR------HKDFAKEILRQKPGIAGELDSRKSS   73 (316)
Q Consensus         2 ~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g------~~~~v~~Ll~~~~~~~~~~d~~g~t   73 (316)
                      .||||.++..+  +.++|+.|+++|++++..   + .+.||||.|+.++      +.+++++|+++|+++ +.+|..|.|
T Consensus        36 ~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~---~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~t  110 (494)
T PHA02989         36 NSILLLYLKRKDVKIKIVKLLIDNGADVNYK---G-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADI-NLKTFNGVS  110 (494)
T ss_pred             CCHHHHHHhcCCCChHHHHHHHHcCCCccCC---C-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCC-CCCCCCCCc
Confidence            45555444332  456666666666655322   2 3456666555433      345566666666665 555666666


Q ss_pred             HHHHHHHc---CCcccccccHHHHHHHHHhCCCCc-ccccCCCCcHHHHHHhc--CCHHHHHHHHhcCCCcccccc-ccC
Q 036662           74 ALHIASQK---RYVGMKSNRIDVLEELVRARPLAA-SAPLIWVETILHLCVKH--NQLEALKVLLENTDDSEFLNA-KDD  146 (316)
Q Consensus        74 pLh~A~~~---g~~~~~~~~~~iv~~Ll~~~~~~~-~~~d~~g~t~Lh~A~~~--g~~~~v~~Ll~~g~~~~~~~~-~d~  146 (316)
                      |||.|+..   |+.++       +++|++ +|+++ +.+|..|+||||+|+..  ++.+++++|+++|++   ++. .+.
T Consensus       111 pL~~a~~~~~~~~~ei-------v~~Ll~-~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad---i~~~~~~  179 (494)
T PHA02989        111 PIVCFIYNSNINNCDM-------LRFLLS-KGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVN---LFEKTSL  179 (494)
T ss_pred             HHHHHHHhcccCcHHH-------HHHHHH-CCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC---ccccccc
Confidence            66655544   23344       566665 55555 45555566666655433  355566666666555   444 345


Q ss_pred             CCCcHHHHHHhcC----Ccceec---------------------------------------------ccccccCCCCCH
Q 036662          147 YGMSILHLAVADK----QIEYYN---------------------------------------------QSECCYANGFTA  177 (316)
Q Consensus       147 ~g~t~Lh~A~~~~----~~~~v~---------------------------------------------~~~~~~~~g~Tp  177 (316)
                      .|.||||+|+..+    +.++++                                             ++|.+|..|+||
T Consensus       180 ~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~Tp  259 (494)
T PHA02989        180 YGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNP  259 (494)
T ss_pred             cCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCH
Confidence            5555555554332    223222                                             567888999999


Q ss_pred             HHHHHhccCCCcHHHHHHHHHHhCCCcccccCCccccccccccCcc
Q 036662          178 WDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNSL  223 (316)
Q Consensus       178 L~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  223 (316)
                      ||+|+.    .++.+++++|+++|++.+.....+.+|...+.....
T Consensus       260 L~~Aa~----~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~  301 (494)
T PHA02989        260 LLISAK----VDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGN  301 (494)
T ss_pred             HHHHHH----hcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence            999999    889999999999999999998888888876655443

>PHA02798 ankyrin-like protein; Provisional

Probab=99.97  E-value=1e-29  Score=238.68  Aligned_cols=192  Identities=14%  Similarity=0.057  Sum_probs=102.4

Q ss_pred             CCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcC---CHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCC---cc
Q 036662           12 GSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLR---HKDFAKEILRQKPGIAGELDSRKSSALHIASQKRY---VG   85 (316)
Q Consensus        12 g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~---~~   85 (316)
                      +..++++.|+++|+++   +.+|..|+||||+|+..|   +.+++++|+++|+++ +.+|..|.||||+|++.|+   .+
T Consensus        87 ~~~~iv~~Ll~~Gadi---N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~  162 (489)
T PHA02798         87 HMLDIVKILIENGADI---NKKNSDGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIE  162 (489)
T ss_pred             hHHHHHHHHHHCCCCC---CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHH
Confidence            3344455555544444   222444455555544443   344455555555544 4444445555555444443   33


Q ss_pred             cccccHHHHHHHHHhCCCCccccc-CCCCcHHHHHHhc----CCHHHHHHHHhcCCCccccccccCCCCcHHHH------
Q 036662           86 MKSNRIDVLEELVRARPLAASAPL-IWVETILHLCVKH----NQLEALKVLLENTDDSEFLNAKDDYGMSILHL------  154 (316)
Q Consensus        86 ~~~~~~~iv~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~----g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~------  154 (316)
                      +       +++|++ .|++++..+ ..|.||||.++.+    ++.+++++|+++|++   ++..|..|+|+++-      
T Consensus       163 v-------v~~Ll~-~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~---i~~~~~~~~~~~~~~l~~l~  231 (489)
T PHA02798        163 I-------IKLLLE-KGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFI---INKENKSHKKKFMEYLNSLL  231 (489)
T ss_pred             H-------HHHHHH-hCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCC---cccCCccccchHHHHHHHHH
Confidence            3       444444 444444432 2344555544332    244455555554444   34444444443330      


Q ss_pred             -HHhcCCcceec------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCccccccccccCc
Q 036662          155 -AVADKQIEYYN------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNS  222 (316)
Q Consensus       155 -A~~~~~~~~v~------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  222 (316)
                       +...+..+++.      ++|.+|..|+||||+|+.    .++.+++++|+++||+++.....+.+|...+....
T Consensus       232 ~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~----~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~  302 (489)
T PHA02798        232 YDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVS----HNNRKIFEYLLQLGGDINIITELGNTCLFTAFENE  302 (489)
T ss_pred             hhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHH----cCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcC
Confidence             11111222222      677888889999999988    78888999999999998888888888876654433

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=2.5e-29  Score=231.88  Aligned_cols=197  Identities=19%  Similarity=0.144  Sum_probs=174.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      .+||||+|+.....+.++.|++.|++..-   .+..+.+|+|+|+..|+.++.+.|+++|+|+ +..|..|.||||+||.
T Consensus        88 ~n~~l~~a~~~~~~~~i~~Lls~gad~~~---~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dv-nl~de~~~TpLh~A~~  163 (929)
T KOG0510|consen   88 DNTPLHAAVEYNQGDKIQVLLSYGADTPL---RNLNKNAPLHLAADSGNYSCLKLLLDYGADV-NLEDENGFTPLHLAAR  163 (929)
T ss_pred             cCchhHHHhhcchHHHHHHHHhcCCCCCh---hhhhccCchhhccccchHHHHHHHHHhcCCc-cccccCCCchhhHHHh
Confidence            36899999999999999999999998744   4889999999999999999999999999998 9999999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHh-----cCCCccccccccCCCCcHHHHH
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLE-----NTDDSEFLNAKDDYGMSILHLA  155 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~-----~g~~~~~~~~~d~~g~t~Lh~A  155 (316)
                      .++.|.       .++|++ .++++...|.+|.+|+|.|++.|..|+.+..+.     .+.+   +|.-|++|.||||.|
T Consensus       164 ~~~~E~-------~k~Li~-~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~---in~~~n~~~~pLhlA  232 (929)
T KOG0510|consen  164 KNKVEA-------KKELIN-KGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTH---INFDNNEKATPLHLA  232 (929)
T ss_pred             cChHHH-------HHHHHh-cCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcc---cccccCCCCcchhhh
Confidence            999988       888888 888888888899999999999999999988887     4445   888888899999999


Q ss_pred             HhcCCcceec----------------------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCccc
Q 036662          156 VADKQIEYYN----------------------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPAT  213 (316)
Q Consensus       156 ~~~~~~~~v~----------------------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~  213 (316)
                      +..|+++.++                      -+|..|++|.||||+|++    .|+.+.++.|+..|++.+.......+
T Consensus       233 ve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r----~G~~~svd~Ll~~Ga~I~~kn~d~~s  308 (929)
T KOG0510|consen  233 VEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAAR----QGGPESVDNLLGFGASINSKNKDEES  308 (929)
T ss_pred             hhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHH----cCChhHHHHHHHcCCcccccCCCCCC
Confidence            9998888877                      367778889999999998    88889999999999988888777777


Q ss_pred             ccc
Q 036662          214 KVS  216 (316)
Q Consensus       214 ~~~  216 (316)
                      |+.
T Consensus       309 pLH  311 (929)
T KOG0510|consen  309 PLH  311 (929)
T ss_pred             chH
Confidence            664

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=2.2e-29  Score=219.52  Aligned_cols=182  Identities=19%  Similarity=0.181  Sum_probs=163.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHc-ChhhHHh-----hhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHH
Q 036662            2 ESKLYEAALAGSVTSLLEFLQK-DRLILER-----AAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSAL   75 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~-----~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL   75 (316)
                      .|||.+||++|+.++|++|+++ ++++...     +-...+|.+||-.|+..||+++|+.|+++|+++ |..-....|||
T Consensus        43 ~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~V-N~tT~TNStPL  121 (615)
T KOG0508|consen   43 GTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASV-NDTTRTNSTPL  121 (615)
T ss_pred             CCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcc-ccccccCCccH
Confidence            5899999999999999999995 3332111     112346899999999999999999999999998 77777788999


Q ss_pred             HHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 036662           76 HIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA  155 (316)
Q Consensus        76 h~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A  155 (316)
                      --||.-|+.++       +++|++ ++++++..|..|.|.||+|+..|+.+++++|++.|+|   +|.++..|||+||.+
T Consensus       122 raACfDG~lei-------vKyLvE-~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gAD---vn~ks~kGNTALH~c  190 (615)
T KOG0508|consen  122 RAACFDGHLEI-------VKYLVE-HGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGAD---VNAKSYKGNTALHDC  190 (615)
T ss_pred             HHHHhcchhHH-------HHHHHH-cCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCC---cchhcccCchHHHhh
Confidence            99999999988       999998 9999999999999999999999999999999999999   999999999999999


Q ss_pred             HhcCCcceec------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHH
Q 036662          156 VADKQIEYYN------QSECCYANGFTAWDILANSKRKMKDWEIGELLRR  199 (316)
Q Consensus       156 ~~~~~~~~v~------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~  199 (316)
                      ++.|+.++++      ..-.+|..|.|||..|+.    .++.++++.|++
T Consensus       191 aEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~----tG~~~iVe~L~~  236 (615)
T KOG0508|consen  191 AESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAV----TGHTDIVERLLQ  236 (615)
T ss_pred             hhcccHHHHHHHHhCCceeeecCCCCchHHHHhh----hcchHHHHHHhc
Confidence            9999999999      444567789999999999    899999999986

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=4.1e-28  Score=228.04  Aligned_cols=189  Identities=13%  Similarity=0.120  Sum_probs=152.0

Q ss_pred             CCcHHHHHHH------cCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhc---CCHHHHHHHHhhCCCcccccCCCC
Q 036662            1 MESKLYEAAL------AGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALL---RHKDFAKEILRQKPGIAGELDSRK   71 (316)
Q Consensus         1 m~t~L~~A~~------~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g   71 (316)
                      .+||||.|+.      .|+.++|+.|+++|+++   +.+|..|.||||.|+..   |+.+++++|+++|+++.+.+|..|
T Consensus        69 ~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadi---n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g  145 (494)
T PHA02989         69 IETPLCAVLRNREITSNKIKKIVKLLLKFGADI---NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRG  145 (494)
T ss_pred             CCCcHHHHHhccCcchhhHHHHHHHHHHCCCCC---CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCC
Confidence            3688888765      47788888888888887   44578888888877665   578888888888888755778888


Q ss_pred             CcHHHHHHHc--CCcccccccHHHHHHHHHhCCCCccc-ccCCCCcHHHHHHhcC----CHHHHHHHHhcCCCcc-----
Q 036662           72 SSALHIASQK--RYVGMKSNRIDVLEELVRARPLAASA-PLIWVETILHLCVKHN----QLEALKVLLENTDDSE-----  139 (316)
Q Consensus        72 ~tpLh~A~~~--g~~~~~~~~~~iv~~Ll~~~~~~~~~-~d~~g~t~Lh~A~~~g----~~~~v~~Ll~~g~~~~-----  139 (316)
                      +||||+|+..  ++.++       +++|++ .|++++. .+..|.||||+|+.++    +.+++++|++.|++..     
T Consensus       146 ~tpLh~a~~~~~~~~~i-------v~~Ll~-~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~  217 (494)
T PHA02989        146 YNLLHMYLESFSVKKDV-------IKILLS-FGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNG  217 (494)
T ss_pred             CCHHHHHHHhccCCHHH-------HHHHHH-cCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCc
Confidence            8888888765  45666       888888 7777766 5677888888876654    8888888888876521     


Q ss_pred             ------------------------------ccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHH
Q 036662          140 ------------------------------FLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILA  182 (316)
Q Consensus       140 ------------------------------~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~  182 (316)
                                                    .+|.+|.+|+||||+|+..++.++++       +++.+|..|+||||+|+
T Consensus       218 ~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~  297 (494)
T PHA02989        218 SESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAI  297 (494)
T ss_pred             cccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence                                          14667888999999999999999998       99999999999999999


Q ss_pred             hccCCCcHHHHHHHHHHhCCCc
Q 036662          183 NSKRKMKDWEIGELLRRAGAIS  204 (316)
Q Consensus       183 ~~~~~~~~~~i~~~Ll~~ga~~  204 (316)
                      .    .++.++++.|++.+...
T Consensus       298 ~----~~~~~iv~~LL~~~p~~  315 (494)
T PHA02989        298 K----HGNIDMLNRILQLKPGK  315 (494)
T ss_pred             H----cCCHHHHHHHHhcCCCh
Confidence            9    89999999999987644

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=8.9e-28  Score=215.66  Aligned_cols=186  Identities=16%  Similarity=0.078  Sum_probs=160.1

Q ss_pred             HHHHcCCHHHHHHHHHcChhhHHh---hhcCCCCCCHHHHHHh--cCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            7 EAALAGSVTSLLEFLQKDRLILER---AAMNCPSETPLHVAAL--LRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         7 ~A~~~g~~~~v~~Ll~~~~~~~~~---~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      .|+..+..++++.|+.+|++++-.   -.++..++|+||+++.  .|+.++|++|+++|+++ +..  ++.||||.|+..
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~~--~~~t~lh~A~~~  159 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YKI--ECLNAYFRGICK  159 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CCC--CCCCHHHHHHHc
Confidence            688899999999999999986410   0347789999999999  89999999999999998 653  458999999999


Q ss_pred             CCcccccccHHHHHHHHHhCCC-Ccccc-----cCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 036662           82 RYVGMKSNRIDVLEELVRARPL-AASAP-----LIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA  155 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~-~~~~~-----d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A  155 (316)
                      |+.++       +++|++ +|+ ..+..     +..+.|++|.|..+++.+++++|+++|++   +|.+|.+|+||||+|
T Consensus       160 ~~~eI-------Vk~Lls-~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD---IN~kD~~G~TpLh~A  228 (437)
T PHA02795        160 KESSV-------VEFILN-CGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED---INQLDAGGRTLLYRA  228 (437)
T ss_pred             CcHHH-------HHHHHh-cCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC---cCcCCCCCCCHHHHH
Confidence            99999       999999 564 33332     23478999999999999999999999999   999999999999999


Q ss_pred             HhcCCcceec-------ccccccCCCCCHHHHHHhccC----CCcHHHHHHHHHHhCCCccc
Q 036662          156 VADKQIEYYN-------QSECCYANGFTAWDILANSKR----KMKDWEIGELLRRAGAISAK  206 (316)
Q Consensus       156 ~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~----~~~~~~i~~~Ll~~ga~~~~  206 (316)
                      +..|+.++++       +++.+|..|.||||+|+....    ..++.+++++|+++|++...
T Consensus       229 a~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        229 IYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCc
Confidence            9999999998       999999999999999998321    12367999999999997754

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.2e-27  Score=224.72  Aligned_cols=190  Identities=16%  Similarity=0.097  Sum_probs=166.6

Q ss_pred             CCcHHHHHHHcC---CHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCC---HHHHHHHHhhCCCccccc-CCCCCc
Q 036662            1 MESKLYEAALAG---SVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRH---KDFAKEILRQKPGIAGEL-DSRKSS   73 (316)
Q Consensus         1 m~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~---~~~v~~Ll~~~~~~~~~~-d~~g~t   73 (316)
                      ++||||.|+..|   +.++++.|+++|+++   +.+|..|.||||+|+..|+   .+++++|+++|+++ +.. +..|.|
T Consensus       109 G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv---n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi-n~~~~~~~~t  184 (489)
T PHA02798        109 GETPLYCLLSNGYINNLEILLFMIENGADT---TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI-NTHNNKEKYD  184 (489)
T ss_pred             cCcHHHHHHHcCCcChHHHHHHHHHcCCCc---cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCc-ccccCcCCCc
Confidence            579999999986   789999999999988   4459999999999999998   99999999999998 555 568999


Q ss_pred             HHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHH-------HHHhcCCHHHHHHHHhcCCCccccccccC
Q 036662           74 ALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILH-------LCVKHNQLEALKVLLENTDDSEFLNAKDD  146 (316)
Q Consensus        74 pLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh-------~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~  146 (316)
                      |||.++..+.   ..++.+++++|++ .|++++..+..|+++++       .+...++.+++++|+. +++   +|.+|.
T Consensus       185 ~Lh~~~~~~~---~~~~~~ivk~Li~-~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~-~~d---vN~~d~  256 (489)
T PHA02798        185 TLHCYFKYNI---DRIDADILKLFVD-NGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS-YID---INQVDE  256 (489)
T ss_pred             HHHHHHHhcc---ccCCHHHHHHHHH-CCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh-cCC---CCCcCc
Confidence            9999987652   1234556999999 89999998999999877       2445677889988876 588   999999


Q ss_pred             CCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCccc
Q 036662          147 YGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAK  206 (316)
Q Consensus       147 ~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~  206 (316)
                      .|+||||+|+..++.++++       +++.+|..|+|||++|+.    .++.++++.|+++|++.+.
T Consensus       257 ~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~----~~~~~iv~~lL~~~~~~~~  319 (489)
T PHA02798        257 LGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFE----NESKFIFNSILNKKPNKNT  319 (489)
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHH----cCcHHHHHHHHccCCCHHH
Confidence            9999999999999999998       999999999999999999    8999999999999998863

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=3.1e-28  Score=212.42  Aligned_cols=148  Identities=20%  Similarity=0.279  Sum_probs=133.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      -+||..|+..|++++|+.|+++++++++.   .....|||-.||.-|++++|++|+++|+|+ +..|..|.|.||+||.+
T Consensus        85 appLWaAsaAGHl~vVk~L~~~ga~VN~t---T~TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~yk  160 (615)
T KOG0508|consen   85 APPLWAASAAGHLEVVKLLLRRGASVNDT---TRTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYK  160 (615)
T ss_pred             CchhhHHhccCcHHHHHHHHHhcCccccc---cccCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeecc
Confidence            47899999999999999999999888543   666779999999999999999999999998 99999999999999999


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCc
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQI  161 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  161 (316)
                      |+.++       +++|++ .+++++.++..|.|+||.+++.|+.+++++|+++|+.   + .+|..|.|||..|+..|+.
T Consensus       161 Gh~~I-------~qyLle-~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~---i-~~d~~GmtPL~~Aa~tG~~  228 (615)
T KOG0508|consen  161 GHVDI-------AQYLLE-QGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAK---I-DVDGHGMTPLLLAAVTGHT  228 (615)
T ss_pred             CchHH-------HHHHHH-hCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCce---e-eecCCCCchHHHHhhhcch
Confidence            99888       999999 9999999999999999999999999999999999985   3 4678899999999999988


Q ss_pred             ceec
Q 036662          162 EYYN  165 (316)
Q Consensus       162 ~~v~  165 (316)
                      ++|+
T Consensus       229 ~iVe  232 (615)
T KOG0508|consen  229 DIVE  232 (615)
T ss_pred             HHHH
Confidence            7766

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=2e-27  Score=227.56  Aligned_cols=183  Identities=19%  Similarity=0.152  Sum_probs=146.7

Q ss_pred             CCcHHHHHHHc---CCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHH----HHHHHHhhCCCcccccCCCCCc
Q 036662            1 MESKLYEAALA---GSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKD----FAKEILRQKPGIAGELDSRKSS   73 (316)
Q Consensus         1 m~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~~d~~g~t   73 (316)
                      ++||||+|+..   |+.++|+.|++.|+++.   ..+..|.||||+|+..|+.+    +++.|++.+... +..|  ..+
T Consensus        32 g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~---~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~-n~~~--~~~  105 (661)
T PHA02917         32 KNNALHAYLFNEHCNNVEVVKLLLDSGTNPL---HKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYS-NIND--FNI  105 (661)
T ss_pred             CCcHHHHHHHhhhcCcHHHHHHHHHCCCCcc---ccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCC-CCCC--cch
Confidence            46899987555   78999999999988774   45888999999999988854    557777765432 3323  236


Q ss_pred             HHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHH--HhcCCHHHHHHHHhcCCCccccccccC---CC
Q 036662           74 ALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLC--VKHNQLEALKVLLENTDDSEFLNAKDD---YG  148 (316)
Q Consensus        74 pLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A--~~~g~~~~v~~Ll~~g~~~~~~~~~d~---~g  148 (316)
                      ++|+|+.+|+.++       +++|++ .|++++.+|.+|+||||.|  +.+|+.+++++|+++|++   +|.+|.   .|
T Consensus       106 ~~~~a~~~~~~e~-------vk~Ll~-~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~---vn~~d~~~~~g  174 (661)
T PHA02917        106 FSYMKSKNVDVDL-------IKVLVE-HGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCS---VLYEDEDDEYG  174 (661)
T ss_pred             HHHHHhhcCCHHH-------HHHHHH-cCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCC---ccccccccccc
Confidence            7788888888888       999999 9999999999999999964  457899999999999999   775543   34


Q ss_pred             -----------CcHHHHHHh-----------cCCcceec-------ccccccCCCCCHHHHHHhccCCCcH--HHHHHHH
Q 036662          149 -----------MSILHLAVA-----------DKQIEYYN-------QSECCYANGFTAWDILANSKRKMKD--WEIGELL  197 (316)
Q Consensus       149 -----------~t~Lh~A~~-----------~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~--~~i~~~L  197 (316)
                                 .||||+|+.           .++.++++       ++|.+|.+|.||||+|+.    .++  .|++++|
T Consensus       175 ~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~----~g~~~~eivk~L  250 (661)
T PHA02917        175 YAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIK----SSHIDIDIVKLL  250 (661)
T ss_pred             cccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHH----cCCCcHHHHHHH
Confidence                       599999986           45778887       899999999999999999    555  4899999


Q ss_pred             HHhCCCcc
Q 036662          198 RRAGAISA  205 (316)
Q Consensus       198 l~~ga~~~  205 (316)
                      ++ |++..
T Consensus       251 i~-g~d~~  257 (661)
T PHA02917        251 MK-GIDNT  257 (661)
T ss_pred             Hh-CCccc
Confidence            75 88654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.5e-27  Score=197.58  Aligned_cols=169  Identities=13%  Similarity=0.087  Sum_probs=146.6

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC--CcccccccHHHHHHHHHhCCCCccccc-C
Q 036662           34 NCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKR--YVGMKSNRIDVLEELVRARPLAASAPL-I  110 (316)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g--~~~~~~~~~~iv~~Ll~~~~~~~~~~d-~  110 (316)
                      ...+.||||+|+..|+.++|+.|++.   . +..|..|.||||+|+..+  +.++       +++|++ .+++++.++ .
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~-n~~~~~g~TpLh~a~~~~~~~~ei-------v~~Ll~-~gadvn~~~~~   85 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---V-NDCNDLYETPIFSCLEKDKVNVEI-------LKFLIE-NGADVNFKTRD   85 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---h-hccCccCCCHHHHHHHcCCCCHHH-------HHHHHH-CCCCCCccCCC
Confidence            45679999999999999999999976   2 567899999999999865  5566       999999 899999887 5


Q ss_pred             CCCcHHHHHHhc---CCHHHHHHHHhcCCCccccccccCCCCcHHHHHHh--cCCcceec-------ccccccCCCCCHH
Q 036662          111 WVETILHLCVKH---NQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVA--DKQIEYYN-------QSECCYANGFTAW  178 (316)
Q Consensus       111 ~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~--~~~~~~v~-------~~~~~~~~g~TpL  178 (316)
                      .|+||||+|+..   ++.+++++|+++|++   +|.+|.+|.||||+|+.  .++.++++       +++.+|.+|.|||
T Consensus        86 ~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad---in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~L  162 (209)
T PHA02859         86 NNLSALHHYLSFNKNVEPEILKILIDSGSS---ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNIL  162 (209)
T ss_pred             CCCCHHHHHHHhCccccHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHH
Confidence            899999998864   479999999999999   99999999999999986  35788887       8999999999999


Q ss_pred             HHH-HhccCCCcHHHHHHHHHHhCCCcccccCCccccccccccC
Q 036662          179 DIL-ANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTN  221 (316)
Q Consensus       179 ~~a-~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~  221 (316)
                      |.+ ..    .++.+++++|+++|++.+.....+.+|.+++..+
T Consensus       163 h~~a~~----~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        163 YSYILF----HSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             HHHHHh----cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhh
Confidence            964 44    5789999999999999998888888887665443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=8.6e-27  Score=223.27  Aligned_cols=83  Identities=12%  Similarity=0.065  Sum_probs=65.1

Q ss_pred             CCcHHHHHH--HcCCHHHHHHHHHcChhhHHhhhcCCCC-----------CCHHHHHHh-----------cCCHHHHHHH
Q 036662            1 MESKLYEAA--LAGSVTSLLEFLQKDRLILERAAMNCPS-----------ETPLHVAAL-----------LRHKDFAKEI   56 (316)
Q Consensus         1 m~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~~~g-----------~t~Lh~A~~-----------~g~~~~v~~L   56 (316)
                      +.||||.|+  ..|+.++|++|+++|++++..+..+..|           .||||+|+.           .|+.+++++|
T Consensus       136 g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~L  215 (661)
T PHA02917        136 HRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCL  215 (661)
T ss_pred             CccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHH
Confidence            468998654  4678999999999998875432223334           599999976           4688999999


Q ss_pred             HhhCCCcccccCCCCCcHHHHHHHcCCc
Q 036662           57 LRQKPGIAGELDSRKSSALHIASQKRYV   84 (316)
Q Consensus        57 l~~~~~~~~~~d~~g~tpLh~A~~~g~~   84 (316)
                      +++|+++ +.+|.+|.||||+|+..|+.
T Consensus       216 i~~Gadv-n~~d~~G~TpLh~A~~~g~~  242 (661)
T PHA02917        216 INHGIKP-SSIDKNYCTALQYYIKSSHI  242 (661)
T ss_pred             HHCCCCc-ccCCCCCCcHHHHHHHcCCC
Confidence            9999998 88899999999999988875

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.95  E-value=4.7e-27  Score=232.49  Aligned_cols=166  Identities=21%  Similarity=0.250  Sum_probs=150.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      |.++||.||..|+.+.++.|++.|.++   +..|..|+||||+|+..|+.++++.|+++|+++ +.+|.+|+||||+|+.
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~---n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~A~~  600 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDP---DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWNAIS  600 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHHHHH
Confidence            468899999999999999999999887   445899999999999999999999999999998 8899999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ  160 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  160 (316)
                      .|+.++       ++.|++ .++..+  ...|.++||.|+.+|+.++++.|+++|++   +|.+|.+|+||||+|+..|+
T Consensus       601 ~g~~~i-------v~~L~~-~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad---in~~d~~G~TpLh~A~~~g~  667 (823)
T PLN03192        601 AKHHKI-------FRILYH-FASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLN---VDSEDHQGATALQVAMAEDH  667 (823)
T ss_pred             hCCHHH-------HHHHHh-cCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHCCc
Confidence            999988       999998 555443  35677999999999999999999999999   99999999999999999999


Q ss_pred             cceec-------ccccccCCC-CCHHHHHHh
Q 036662          161 IEYYN-------QSECCYANG-FTAWDILAN  183 (316)
Q Consensus       161 ~~~v~-------~~~~~~~~g-~TpL~~a~~  183 (316)
                      .++++       +++..|..| .||++++..
T Consensus       668 ~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~  698 (823)
T PLN03192        668 VDMVRLLIMNGADVDKANTDDDFSPTELREL  698 (823)
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH
Confidence            99988       888899888 999988765

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.94  E-value=4.7e-28  Score=235.59  Aligned_cols=191  Identities=23%  Similarity=0.250  Sum_probs=151.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      .||+|.|+.+|..+.++.+++++.++   +..+..|.||||.|+..++.++|+.++++|++. +..+..|.||+|+|+..
T Consensus       375 ~~pl~la~~~g~~~~v~Lll~~ga~~---~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~-~~~~~lG~T~lhvaa~~  450 (1143)
T KOG4177|consen  375 FTPLHLAVKSGRVSVVELLLEAGADP---NSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASP-NAKAKLGYTPLHVAAKK  450 (1143)
T ss_pred             CcchhhhcccCchhHHHhhhhccCCc---ccCCCCCcceeeehhhccCcceEEEEeccCCCh-hhHhhcCCChhhhhhhc
Confidence            57888888888888888888887764   333556666666666666666666666666665 55566666666666666


Q ss_pred             C----------------------------------Cccc--------------------------ccccHHHHHHHHHhC
Q 036662           82 R----------------------------------YVGM--------------------------KSNRIDVLEELVRAR  101 (316)
Q Consensus        82 g----------------------------------~~~~--------------------------~~~~~~iv~~Ll~~~  101 (316)
                      |                                  +.++                          ..+.+.+++.+++ +
T Consensus       451 g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~-~  529 (1143)
T KOG4177|consen  451 GRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLE-H  529 (1143)
T ss_pred             ccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhh-c
Confidence            5                                  3333                          6666677777777 7


Q ss_pred             CCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCC
Q 036662          102 PLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANG  174 (316)
Q Consensus       102 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g  174 (316)
                      +..++.++.+|.||||.|+.+|+.++|++|+++|+|   ++.+|+.|+||||.|+..|+.+|++       ++|..|.+|
T Consensus       530 ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd---v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g  606 (1143)
T KOG4177|consen  530 GANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD---VNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDG  606 (1143)
T ss_pred             CCceehhcccccchHHHHHhcCCchHHHHhhhCCcc---ccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccC
Confidence            888888899999999999999999999999999999   9999999999999999999999888       899999999


Q ss_pred             CCHHHHHHhccCCCcHHHHHHHHHHhCCCc
Q 036662          175 FTAWDILANSKRKMKDWEIGELLRRAGAIS  204 (316)
Q Consensus       175 ~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~  204 (316)
                      .|||++|..    .++.++++.|+..|+++
T Consensus       607 ~TpL~iA~~----lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  607 FTPLHIAVR----LGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             cchhHHHHH----hcccchhhHHHhccCcc
Confidence            999999999    89999999999999983

>PHA02792 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.8e-25  Score=207.87  Aligned_cols=206  Identities=12%  Similarity=0.024  Sum_probs=173.2

Q ss_pred             CcHHHHHHH-cCCHHHHHHHHHcChhhHH---------------------------------hhhcCCCCCCHHHHHHhc
Q 036662            2 ESKLYEAAL-AGSVTSLLEFLQKDRLILE---------------------------------RAAMNCPSETPLHVAALL   47 (316)
Q Consensus         2 ~t~L~~A~~-~g~~~~v~~Ll~~~~~~~~---------------------------------~~~~~~~g~t~Lh~A~~~   47 (316)
                      +||||.|+. .|+.|++++|+++|++...                                 .+..|..|+||||+|+..
T Consensus       106 ~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~  185 (631)
T PHA02792        106 NIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIIT  185 (631)
T ss_pred             CcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhh
Confidence            688899966 6999999999999976311                                 012456799999999999


Q ss_pred             C-------CHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCC--ccc--------------------------------
Q 036662           48 R-------HKDFAKEILRQKPGIAGELDSRKSSALHIASQKRY--VGM--------------------------------   86 (316)
Q Consensus        48 g-------~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~--~~~--------------------------------   86 (316)
                      +       +.|+++.|+++|+++ +..|..|.||||+|+...+  .|+                                
T Consensus       186 ~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~  264 (631)
T PHA02792        186 RSQDGYATSLDVINYLISHEKEM-RYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHK  264 (631)
T ss_pred             CCcccccCCHHHHHHHHhCCCCc-CccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccC
Confidence            9       899999999999999 8899999999999999993  343                                


Q ss_pred             ----------------------------------------------------ccccHHHHHHHHHhCCCCcccccCCCCc
Q 036662           87 ----------------------------------------------------KSNRIDVLEELVRARPLAASAPLIWVET  114 (316)
Q Consensus        87 ----------------------------------------------------~~~~~~iv~~Ll~~~~~~~~~~d~~g~t  114 (316)
                                                                          ..-+.+++++|++ .|+...  ...+.+
T Consensus       265 id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId-~Ga~~~--r~~~~n  341 (631)
T PHA02792        265 IDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMID-EGATLY--RFKHIN  341 (631)
T ss_pred             ccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHH-CCCccc--cCCcch
Confidence                                                                3347899999999 777654  233677


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCccccccccCCC--CcHHHHHHhcCCcce---ec-------ccccccCCCCCHHHHHH
Q 036662          115 ILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYG--MSILHLAVADKQIEY---YN-------QSECCYANGFTAWDILA  182 (316)
Q Consensus       115 ~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g--~t~Lh~A~~~~~~~~---v~-------~~~~~~~~g~TpL~~a~  182 (316)
                      +++.|+.+|+.+++++|+++|++   ++.+|.+|  .||||+|......+.   ++       ++|.+|..|.||||+|+
T Consensus       342 ~~~~Aa~~gn~eIVelLIs~GAD---IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa  418 (631)
T PHA02792        342 KYFQKFDNRDPKVVEYILKNGNV---VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCI  418 (631)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCc---hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHH
Confidence            89999999999999999999999   99999875  699999877665432   32       89999999999999999


Q ss_pred             hccCCCcHHHHHHHHHHhCCCcccccCCcccccccc
Q 036662          183 NSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSIT  218 (316)
Q Consensus       183 ~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~  218 (316)
                      .    .++.+++++|+++|++.+.....+.++...+
T Consensus       419 ~----~~n~eivelLLs~GADIN~kD~~G~TpL~~A  450 (631)
T PHA02792        419 E----SHSVSLVEWLIDNGADINITTKYGSTCIGIC  450 (631)
T ss_pred             H----cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            9    8899999999999999998888888877654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.93  E-value=1.9e-25  Score=221.15  Aligned_cols=164  Identities=16%  Similarity=0.124  Sum_probs=149.7

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCC
Q 036662           34 NCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVE  113 (316)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~  113 (316)
                      +..+.++||.||..|+.++++.|++.|+++ +..|.+|.||||+|+..|+.++       ++.|++ ++++++.+|.+|+
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~-n~~d~~G~TpLh~Aa~~g~~~~-------v~~Ll~-~gadin~~d~~G~  592 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDP-DIGDSKGRTPLHIAASKGYEDC-------VLVLLK-HACNVHIRDANGN  592 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcChHHH-------HHHHHh-cCCCCCCcCCCCC
Confidence            456789999999999999999999999998 8999999999999999999998       999999 8999999999999


Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccC
Q 036662          114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKR  186 (316)
Q Consensus       114 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~  186 (316)
                      ||||+|+..|+.+++++|++.++.   .+  +..|.++||.|+..|+.++++       ++|.+|.+|.||||+|+.   
T Consensus       593 TpL~~A~~~g~~~iv~~L~~~~~~---~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~---  664 (823)
T PLN03192        593 TALWNAISAKHHKIFRILYHFASI---SD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMA---  664 (823)
T ss_pred             CHHHHHHHhCCHHHHHHHHhcCcc---cC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH---
Confidence            999999999999999999988765   32  456789999999999999998       899999999999999999   


Q ss_pred             CCcHHHHHHHHHHhCCCcccccCCc-cccc
Q 036662          187 KMKDWEIGELLRRAGAISAKEMQQP-ATKV  215 (316)
Q Consensus       187 ~~~~~~i~~~Ll~~ga~~~~~~~~~-~~~~  215 (316)
                       .++.+++++|+++|++.+.....+ .++.
T Consensus       665 -~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~  693 (823)
T PLN03192        665 -EDHVDMVRLLIMNGADVDKANTDDDFSPT  693 (823)
T ss_pred             -CCcHHHHHHHHHcCCCCCCCCCCCCCCHH
Confidence             899999999999999998776554 4443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.93  E-value=3.7e-25  Score=207.82  Aligned_cols=206  Identities=13%  Similarity=0.111  Sum_probs=160.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcChhhHHh----hhcCC-CCCCHHHHHH------hcCCHHHHHHHHhhCCCcccccCCCC
Q 036662            3 SKLYEAALAGSVTSLLEFLQKDRLILER----AAMNC-PSETPLHVAA------LLRHKDFAKEILRQKPGIAGELDSRK   71 (316)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~----~~~~~-~g~t~Lh~A~------~~g~~~~v~~Ll~~~~~~~~~~d~~g   71 (316)
                      +|++.+...++.++|++|+++|+++.--    ...+. -..|.||++.      ..++.|++++|+++|+++ +.+|..|
T Consensus       157 ~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadI-N~kd~~G  235 (672)
T PHA02730        157 VDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSI-HGRDEGG  235 (672)
T ss_pred             hhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCC-CCCCCCC
Confidence            6889999999999999999999887311    11233 3345566443      446889999999999998 8899999


Q ss_pred             CcHHHH--HHHcCCccc---------------------------------------------------------------
Q 036662           72 SSALHI--ASQKRYVGM---------------------------------------------------------------   86 (316)
Q Consensus        72 ~tpLh~--A~~~g~~~~---------------------------------------------------------------   86 (316)
                      +||||+  +...|+.|+                                                               
T Consensus       236 ~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~  315 (672)
T PHA02730        236 SLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSI  315 (672)
T ss_pred             CCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhcc
Confidence            999984  443444444                                                               


Q ss_pred             ------------------------------------c---cccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCC---
Q 036662           87 ------------------------------------K---SNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQ---  124 (316)
Q Consensus        87 ------------------------------------~---~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~---  124 (316)
                                                          .   ..+.+++++|++ +|++++.. ..|+||||+|+..++   
T Consensus       316 ~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs-~GAdIN~k-~~G~TpLH~Aa~~nnn~i  393 (672)
T PHA02730        316 TSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLD-NGATMDKT-TDNNYPLHDYFVNNNNIV  393 (672)
T ss_pred             ccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHH-CCCCCCcC-CCCCcHHHHHHHHcCCcc
Confidence                                                1   246899999999 89999984 799999999998875   


Q ss_pred             -HHHHHHHHhcCC--CccccccccCCCCcHHHH---HHhcCC----cc-----eec-------ccccccCCCCCHHHHHH
Q 036662          125 -LEALKVLLENTD--DSEFLNAKDDYGMSILHL---AVADKQ----IE-----YYN-------QSECCYANGFTAWDILA  182 (316)
Q Consensus       125 -~~~v~~Ll~~g~--~~~~~~~~d~~g~t~Lh~---A~~~~~----~~-----~v~-------~~~~~~~~g~TpL~~a~  182 (316)
                       .+++++|+++|+  +   +|.+|.+|.||||.   |...+.    .+     +++       ++|.+|+.|+||||+|+
T Consensus       394 ~~eIvelLIs~Ga~~d---IN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa  470 (672)
T PHA02730        394 DVNVVRFIVENNGHMA---INHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAV  470 (672)
T ss_pred             hHHHHHHHHHcCCCcc---ccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHH
Confidence             899999999997  5   89999999999994   333321    12     244       89999999999999999


Q ss_pred             hccCCCcHHHHHHHHHHhCCCcccccC-Ccccccccc
Q 036662          183 NSKRKMKDWEIGELLRRAGAISAKEMQ-QPATKVSIT  218 (316)
Q Consensus       183 ~~~~~~~~~~i~~~Ll~~ga~~~~~~~-~~~~~~~~~  218 (316)
                      .    .++.+++++|+++||+.+.... .+.++....
T Consensus       471 ~----~~~~eive~LI~~GAdIN~~d~~~g~TaL~~A  503 (672)
T PHA02730        471 D----VNNIQFARRLLEYGASVNTTSRSIINTAIQKS  503 (672)
T ss_pred             H----hCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHH
Confidence            9    7889999999999999988775 456665443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.93  E-value=3.1e-25  Score=208.28  Aligned_cols=183  Identities=14%  Similarity=0.024  Sum_probs=148.9

Q ss_pred             CCcHHHHHHHcC---CHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcC--CHHHHHHHHhhCC--CcccccCCCCCc
Q 036662            1 MESKLYEAALAG---SVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLR--HKDFAKEILRQKP--GIAGELDSRKSS   73 (316)
Q Consensus         1 m~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~--~~~~~~d~~g~t   73 (316)
                      ++||||+|+..|   +.++|+.||++|+++.   .+|..|+||||+|+..|  +.++|++|++.|+  ++ +..|..+.+
T Consensus        41 G~TaLh~A~~~~~~~~~eivklLLs~GAdin---~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~-~~~~~~~d~  116 (672)
T PHA02730         41 GNNALHCYVSNKCDTDIKIVRLLLSRGVERL---CRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASN-ELTSNINDF  116 (672)
T ss_pred             CCcHHHHHHHcCCcCcHHHHHHHHhCCCCCc---ccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCc-ccccccCCc
Confidence            579999999997   5999999999999984   55999999999999977  7999999999965  44 557888999


Q ss_pred             HHHHHHH--cCCcccccccHHHHHHHHHhCCCCcccccC-----CCCcHHHHHHhcCCHHHHHHHHhcCCCccccc----
Q 036662           74 ALHIASQ--KRYVGMKSNRIDVLEELVRARPLAASAPLI-----WVETILHLCVKHNQLEALKVLLENTDDSEFLN----  142 (316)
Q Consensus        74 pLh~A~~--~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~-----~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~----  142 (316)
                      |||.++.  .++.++       +++|++..+.+++...+     .|.+|++++..+++.|+|++|+++|++   ++    
T Consensus       117 ~l~~y~~s~n~~~~~-------vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~---v~g~~~  186 (672)
T PHA02730        117 DLYSYMSSDNIDLRL-------LKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECY---STGYVF  186 (672)
T ss_pred             hHHHHHHhcCCcHHH-------HHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCc---cccccc
Confidence            9999988  555555       99999756667666532     789999999999999999999999999   64    


Q ss_pred             ---cccCCCC-cHHHHHH------hcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHH
Q 036662          143 ---AKDDYGM-SILHLAV------ADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRR  199 (316)
Q Consensus       143 ---~~d~~g~-t~Lh~A~------~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~  199 (316)
                         ..|..+. |.||++.      ..++.++++       ++|.+|.+|+||||++....  .++.|++++|++
T Consensus       187 ~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~--~~~~eiv~~Li~  258 (672)
T PHA02730        187 RSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCS--TIDIEIVKLLIK  258 (672)
T ss_pred             ccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC--cccHHHHHHHHh
Confidence               3455555 4466444      445666666       99999999999999633311  556899999999

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=2.5e-25  Score=199.87  Aligned_cols=178  Identities=10%  Similarity=0.055  Sum_probs=147.9

Q ss_pred             CcHHHHHHH--cCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCccccc-----CCCCCcH
Q 036662            2 ESKLYEAAL--AGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGEL-----DSRKSSA   74 (316)
Q Consensus         2 ~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-----d~~g~tp   74 (316)
                      +|+||.|+.  .|+.++|++|+++|+++..     .++.||||.|+..|+.+++++|+++|++..+..     +..|.||
T Consensus       117 ~~~L~~~~~n~~n~~eiV~~LI~~GADIn~-----~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~  191 (437)
T PHA02795        117 QDLLLYYLSNAYVEIDIVDFMVDHGAVIYK-----IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTR  191 (437)
T ss_pred             cHHHHHHHHhcCCCHHHHHHHHHCCCCCCC-----CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccch
Confidence            689999999  9999999999999998732     345899999999999999999999998653333     2357899


Q ss_pred             HHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHH
Q 036662           75 LHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHL  154 (316)
Q Consensus        75 Lh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~  154 (316)
                      +|.|+..++.++       +++|++ ++++++.+|..|+||||+|+.+|+.+++++|+++|++   +|.+|..|+||||+
T Consensus       192 l~~a~~~~~~eI-------ve~LIs-~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd---IN~~d~~G~TpLh~  260 (437)
T PHA02795        192 GFLVDEPTVLEI-------YKLCIP-YIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN---VNAVMSNGYTCLDV  260 (437)
T ss_pred             hHHHHhcCHHHH-------HHHHHh-CcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHH
Confidence            999999998888       999999 8999999999999999999999999999999999999   99999999999999


Q ss_pred             HHhcCC--------cceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCc
Q 036662          155 AVADKQ--------IEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAIS  204 (316)
Q Consensus       155 A~~~~~--------~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~  204 (316)
                      |+..|+        .++++       +++.   .+.|++..      .....++++.+++++...
T Consensus       261 Aa~~g~~~~~~~~~~eIvelLL~~gadI~~---~~~~~~~~------~~~n~~~ik~lI~y~~~l  316 (437)
T PHA02795        261 AVDRGSVIARRETHLKILEILLREPLSIDC---IKLAILNN------TIENHDVIKLCIKYFMMV  316 (437)
T ss_pred             HHHcCCcccccccHHHHHHHHHhCCCCCCc---hhHHhhhc------ccchHHHHHHHHHHHHhc
Confidence            999985        35666       2222   11222111      123678899988887744

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.92  E-value=1.5e-24  Score=213.39  Aligned_cols=187  Identities=20%  Similarity=0.194  Sum_probs=143.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHc--ChhhHHhhhcCCCCCCHHH-HHHhcCCHHHHHHHHhhCCC----------------
Q 036662            2 ESKLYEAALAGSVTSLLEFLQK--DRLILERAAMNCPSETPLH-VAALLRHKDFAKEILRQKPG----------------   62 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~~~~g~t~Lh-~A~~~g~~~~v~~Ll~~~~~----------------   62 (316)
                      +.+|+.|++.|+.+.|+.++++  +.++   +..|..|+|||| .|+.+++.+++++|+++|+.                
T Consensus        18 ~~~~l~A~~~g~~~~v~~lL~~~~~~~i---n~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~   94 (743)
T TIGR00870        18 EKAFLPAAERGDLASVYRDLEEPKKLNI---NCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYV   94 (743)
T ss_pred             HHHHHHHHHcCCHHHHHHHhccccccCC---CCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccH
Confidence            4567777777777777777776  4433   334667777777 66677777777777776630                


Q ss_pred             ------------c---------c----cccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCccccc--------
Q 036662           63 ------------I---------A----GELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPL--------  109 (316)
Q Consensus        63 ------------~---------~----~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d--------  109 (316)
                                  .         .    ...+..|.||||+|+.+|+.++       ++.|++ ++++++.++        
T Consensus        95 ~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~ei-------VklLL~-~GAdv~~~~~~~~~~~~  166 (743)
T TIGR00870        95 DAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEI-------VKLLLE-RGASVPARACGDFFVKS  166 (743)
T ss_pred             HHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHH-------HHHHHh-CCCCCCcCcCCchhhcC
Confidence                        0         0    0012458899999998888888       999999 888887643        


Q ss_pred             ------CCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC-----cc----eec---------
Q 036662          110 ------IWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ-----IE----YYN---------  165 (316)
Q Consensus       110 ------~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~-----~~----~v~---------  165 (316)
                            ..|+||||+|+..|+.+++++|+++|+|   +|.+|..|+||||+|+..+.     .+    +.+         
T Consensus       167 ~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad---in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~  243 (743)
T TIGR00870       167 QGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD---ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKL  243 (743)
T ss_pred             CCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc---hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence                  3699999999999999999999999999   99999999999999999862     11    111         


Q ss_pred             -cc----ccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCccc
Q 036662          166 -QS----ECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAK  206 (316)
Q Consensus       166 -~~----~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~  206 (316)
                       +.    +..|++|.||||+|+.    .++.+++++|++.+.+..+
T Consensus       244 ~~~~el~~i~N~~g~TPL~~A~~----~g~~~l~~lLL~~~~~~kk  285 (743)
T TIGR00870       244 RDSKELEVILNHQGLTPLKLAAK----EGRIVLFRLKLAIKYKQKK  285 (743)
T ss_pred             CChHhhhhhcCCCCCCchhhhhh----cCCccHHHHHHHHHHhcce
Confidence             22    7789999999999999    8999999999997766543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.92  E-value=4.3e-25  Score=215.10  Aligned_cols=215  Identities=20%  Similarity=0.178  Sum_probs=180.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      .||||.++..|+.+.+..+.+.++.-   ...+..|.||+|.|+..|..+++++++.+|+++ +.++..|.||||.|+.+
T Consensus       342 ~t~lHlaa~~~~~~~~~~l~~~~~~~---~~a~~k~~~pl~la~~~g~~~~v~Lll~~ga~~-~~~gk~gvTplh~aa~~  417 (1143)
T KOG4177|consen  342 YTPLHLAAKEGQVEVAGALLEHGAQR---RQAEEKGFTPLHLAVKSGRVSVVELLLEAGADP-NSAGKNGVTPLHVAAHY  417 (1143)
T ss_pred             cccccHhhhhhhHHHHHHhhcccccc---CcccccCCcchhhhcccCchhHHHhhhhccCCc-ccCCCCCcceeeehhhc
Confidence            57888888888888777777776644   334788999999999999999999999999997 99999999999999999


Q ss_pred             CCccc--------------------------ccc-cHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhc
Q 036662           82 RYVGM--------------------------KSN-RIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLEN  134 (316)
Q Consensus        82 g~~~~--------------------------~~~-~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  134 (316)
                      ++..+                          ..| ..++...+++ .+.+++.....|.||||+|+..|+.++++.|++.
T Consensus       418 ~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~-~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~  496 (1143)
T KOG4177|consen  418 GNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQ-YGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEG  496 (1143)
T ss_pred             cCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhh-cCCCcchhccccCcchhhhhccCCchHHHHhhhc
Confidence            99888                          555 5666666666 7888888888888888888888888887777775


Q ss_pred             CCC------------------------------ccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCH
Q 036662          135 TDD------------------------------SEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTA  177 (316)
Q Consensus       135 g~~------------------------------~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~Tp  177 (316)
                      ++.                              ...++.++..|+||||.|+..|+.+.|+       +++.+++.|+||
T Consensus       497 ~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TP  576 (1143)
T KOG4177|consen  497 GANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTP  576 (1143)
T ss_pred             CCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCCh
Confidence            421                              1236788899999999999999999999       999999999999


Q ss_pred             HHHHHhccCCCcHHHHHHHHHHhCCCcccccCCccccccccccCcccc
Q 036662          178 WDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNSLTS  225 (316)
Q Consensus       178 L~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~  225 (316)
                      ||.|+.    .++.+|+++|+++||+++.......+++.........+
T Consensus       577 LH~Aa~----~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~  620 (1143)
T KOG4177|consen  577 LHQAAQ----QGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLS  620 (1143)
T ss_pred             hhHHHH----cChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccc
Confidence            999999    89999999999999999999888888876555443333

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=9.7e-24  Score=169.63  Aligned_cols=134  Identities=15%  Similarity=0.157  Sum_probs=109.9

Q ss_pred             CcHHHHHHHcCCH----HHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHH---HHHHHhhCCCcccccC-CCCCc
Q 036662            2 ESKLYEAALAGSV----TSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDF---AKEILRQKPGIAGELD-SRKSS   73 (316)
Q Consensus         2 ~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~---v~~Ll~~~~~~~~~~d-~~g~t   73 (316)
                      .++||.|++.|+.    ++++.|++.+..+.   .+|..|+||||+|+..|+.+.   +++|+++|+++ +.+| ..|.|
T Consensus        21 ~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~---~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-n~~d~~~g~T   96 (166)
T PHA02743         21 QNTFLRICRTGNIYELMEVAPFISGDGHLLH---RYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-NARELGTGNT   96 (166)
T ss_pred             CcHHHHHHHcCCHHHHHHHHHHHhhcchhhh---ccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-CCCCCCCCCc
Confidence            4688999999998    45556667776653   348889999999999887654   78899999988 7777 57999


Q ss_pred             HHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCC
Q 036662           74 ALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGM  149 (316)
Q Consensus        74 pLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~  149 (316)
                      |||+|+..|+.++       +++|++..+.+++.+|..|+||||+|+..++.+++++|+++|++   ++.++..|.
T Consensus        97 pLh~A~~~g~~~i-------v~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~---~~~~~~~~~  162 (166)
T PHA02743         97 LLHIAASTKNYEL-------AEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAV---CDDPLSIGL  162 (166)
T ss_pred             HHHHHHHhCCHHH-------HHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcccCCc
Confidence            9999998888888       99888657888888899999999999999999999999999988   888877764

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.91  E-value=1.7e-24  Score=183.62  Aligned_cols=178  Identities=20%  Similarity=0.196  Sum_probs=147.6

Q ss_pred             CHHHHHHHHHc----ChhhHH--hhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCccc
Q 036662           13 SVTSLLEFLQK----DRLILE--RAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGM   86 (316)
Q Consensus        13 ~~~~v~~Ll~~----~~~~~~--~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~   86 (316)
                      +.+.|+..|..    .+.+.+  .+.-|.+|+|+||||+.++++++|+.||+.|.--.+.+|..|.||+++++...-.. 
T Consensus       238 ~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~-  316 (452)
T KOG0514|consen  238 DPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQ-  316 (452)
T ss_pred             CHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcc-
Confidence            45666655543    233222  23458999999999999999999999999997656999999999999988655321 


Q ss_pred             ccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-
Q 036662           87 KSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-  165 (316)
Q Consensus        87 ~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-  165 (316)
                       .-+.++|..|.+ .++.--.-...|+|+|++|+.+|+.++|+.|+..|+|   +|.+|.+|-|+|.+|++.||.++++ 
T Consensus       317 -~~d~~vV~~LF~-mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAd---VNiQDdDGSTALMCA~EHGhkEivkl  391 (452)
T KOG0514|consen  317 -PADRTVVERLFK-MGDVNAKASQHGQTALMLAVSHGRVDMVKALLACGAD---VNIQDDDGSTALMCAAEHGHKEIVKL  391 (452)
T ss_pred             -hhhHHHHHHHHh-ccCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCC---CccccCCccHHHhhhhhhChHHHHHH
Confidence             234566999988 5543323357899999999999999999999999999   9999999999999999999999999 


Q ss_pred             -------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHh
Q 036662          166 -------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRA  200 (316)
Q Consensus       166 -------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~  200 (316)
                             |+...|.+|-|+|.+|..    .++.||.-+|..+
T Consensus       392 LLA~p~cd~sLtD~DgSTAl~IAle----agh~eIa~mlYa~  429 (452)
T KOG0514|consen  392 LLAVPSCDISLTDVDGSTALSIALE----AGHREIAVMLYAH  429 (452)
T ss_pred             HhccCcccceeecCCCchhhhhHHh----cCchHHHHHHHHH
Confidence                   888999999999999999    8999998888654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=9e-25  Score=173.45  Aligned_cols=178  Identities=20%  Similarity=0.148  Sum_probs=131.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 036662            3 SKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKR   82 (316)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g   82 (316)
                      ++++.|+-+|+.+.+..+|.++...++.   +--+.+|+.+++...+++.+..+.+.   ..|..|..|.|||.||+..|
T Consensus        98 ~~~~v~ap~~s~~k~sttltN~~rgnev---s~~p~s~~slsVhql~L~~~~~~~~n---~VN~~De~GfTpLiWAaa~G  171 (296)
T KOG0502|consen   98 SALLVAAPCGSVDKVSTTLTNGARGNEV---SLMPWSPLSLSVHQLHLDVVDLLVNN---KVNACDEFGFTPLIWAAAKG  171 (296)
T ss_pred             hhhhhcCCCCCcceeeeeecccccCCcc---ccccCChhhHHHHHHHHHHHHHHhhc---cccCccccCchHhHHHHhcC
Confidence            4567777777778888888777766443   66777888888877777766665543   23667788888888888887


Q ss_pred             CcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcc
Q 036662           83 YVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE  162 (316)
Q Consensus        83 ~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~  162 (316)
                      +.++       |++||+ .|++++...+...++|.+|+..|..++|++|+.++.|   +|..|-+|-|||-+|++.++.+
T Consensus       172 ~i~v-------V~fLL~-~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vd---VNvyDwNGgTpLlyAvrgnhvk  240 (296)
T KOG0502|consen  172 HIPV-------VQFLLN-SGADPDALGKYRESALSLATRGGYTDIVELLLTREVD---VNVYDWNGGTPLLYAVRGNHVK  240 (296)
T ss_pred             chHH-------HHHHHH-cCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC---cceeccCCCceeeeeecCChHH
Confidence            7777       888887 7777777777777888888888888888888887777   7888888888888888888888


Q ss_pred             eec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCC
Q 036662          163 YYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGA  202 (316)
Q Consensus       163 ~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga  202 (316)
                      |++       +++..+..|.+++++|..    .++. +++..+++-+
T Consensus       241 cve~Ll~sGAd~t~e~dsGy~~mdlAVa----lGyr-~Vqqvie~h~  282 (296)
T KOG0502|consen  241 CVESLLNSGADVTQEDDSGYWIMDLAVA----LGYR-IVQQVIEKHA  282 (296)
T ss_pred             HHHHHHhcCCCcccccccCCcHHHHHHH----hhhH-HHHHHHHHHH
Confidence            777       777777888888888777    5555 4444444433

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.90  E-value=5.1e-23  Score=165.42  Aligned_cols=139  Identities=17%  Similarity=0.121  Sum_probs=116.2

Q ss_pred             cCCCCCCHHHHHHhcCCH----HHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccc
Q 036662           33 MNCPSETPLHVAALLRHK----DFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAP  108 (316)
Q Consensus        33 ~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~  108 (316)
                      .+.++.++||.||+.|+.    +++++|++.|+++ +.+|..|+||||+|+..|+.+.    ++++++|++ .+++++.+
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~-~~~d~~g~t~Lh~Aa~~g~~~~----~~~i~~Ll~-~Gadin~~   89 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLL-HRYDHHGRQCTHMVAWYDRANA----VMKIELLVN-MGADINAR   89 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhh-hccCCCCCcHHHHHHHhCccCH----HHHHHHHHH-cCCCCCCC
Confidence            377888999999999998    6777788889887 8889999999999999998764    334788998 88999999


Q ss_pred             c-CCCCcHHHHHHhcCCHHHHHHHHh-cCCCccccccccCCCCcHHHHHHhcCCcceecccccccCCCCCHHHHHHhccC
Q 036662          109 L-IWVETILHLCVKHNQLEALKVLLE-NTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANGFTAWDILANSKR  186 (316)
Q Consensus       109 d-~~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~~~~~~~~g~TpL~~a~~~~~  186 (316)
                      | ..|+||||+|+.+|+.+++++|++ .|++   ++.+|.+|+||||+|+..                            
T Consensus        90 d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad---~~~~d~~g~tpL~~A~~~----------------------------  138 (166)
T PHA02743         90 ELGTGNTLLHIAASTKNYELAEWLCRQLGVN---LGAINYQHETAYHIAYKM----------------------------  138 (166)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhccCCC---ccCcCCCCCCHHHHHHHc----------------------------
Confidence            8 589999999999999999999995 7888   777777777776666664                            


Q ss_pred             CCcHHHHHHHHHHhCCCcccccCC
Q 036662          187 KMKDWEIGELLRRAGAISAKEMQQ  210 (316)
Q Consensus       187 ~~~~~~i~~~Ll~~ga~~~~~~~~  210 (316)
                        ++.+++++|+++|++.+.+...
T Consensus       139 --~~~~iv~~Ll~~ga~~~~~~~~  160 (166)
T PHA02743        139 --RDRRMMEILRANGAVCDDPLSI  160 (166)
T ss_pred             --CCHHHHHHHHHcCCCCCCcccC
Confidence              4567889999999998776554

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.90  E-value=2.8e-23  Score=179.81  Aligned_cols=152  Identities=17%  Similarity=0.046  Sum_probs=131.9

Q ss_pred             hcCCCCCC-HHHHHHhcCCHHHHHHHHhhCCCccccc----CCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcc
Q 036662           32 AMNCPSET-PLHVAALLRHKDFAKEILRQKPGIAGEL----DSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAAS  106 (316)
Q Consensus        32 ~~~~~g~t-~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~----d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~  106 (316)
                      .+|..|+| +||.|+..|+.+++++|+++|+++ +.+    |..|.||||+|+..|+.++       +++|++ +|++++
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~ei-------vklLL~-~GADVN   97 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDA-------AKLLIR-YGADVN   97 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHH-------HHHHHH-cCCCcC
Confidence            35777775 677788889999999999999998 665    4689999999999999998       999999 899999


Q ss_pred             cc-cCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec---ccccccCCCCCHHHHHH
Q 036662          107 AP-LIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN---QSECCYANGFTAWDILA  182 (316)
Q Consensus       107 ~~-d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~---~~~~~~~~g~TpL~~a~  182 (316)
                      .. +..|.||||+|+..|+.+++++|+++|++   ++.+|.+|.||||+|+..++.+++.   +. ..+..+.+|++.+ 
T Consensus        98 ~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAd---in~kd~~G~TpL~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-  172 (300)
T PHA02884         98 RYAEEAKITPLYISVLHGCLKCLEILLSYGAD---INIQTNDMVTPIELALMICNNFLAFMICDN-EISNFYKHPKKIL-  172 (300)
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHhCChhHHHHhcCC-cccccccChhhhh-
Confidence            86 46899999999999999999999999999   9999999999999999988777655   33 3677888999864 


Q ss_pred             hccCCCcHHHHHHHHHHhCCC
Q 036662          183 NSKRKMKDWEIGELLRRAGAI  203 (316)
Q Consensus       183 ~~~~~~~~~~i~~~Ll~~ga~  203 (316)
                            ...|++++|+.++.-
T Consensus       173 ------~n~ei~~~Lish~vl  187 (300)
T PHA02884        173 ------INFDILKILVSHFIL  187 (300)
T ss_pred             ------ccHHHHHHHHHHHHH
Confidence                  347899999999983

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=1.7e-24  Score=171.92  Aligned_cols=198  Identities=19%  Similarity=0.088  Sum_probs=175.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      |+-+-.+.+.|+.+.+...++-.++-.+  ..+++|++++|.|+-+|+.+.++.+|..|+.. ++.+-.+++|+.+++.+
T Consensus        63 e~~~~~~~~s~nsd~~v~s~~~~~~~~~--~t~p~g~~~~~v~ap~~s~~k~sttltN~~rg-nevs~~p~s~~slsVhq  139 (296)
T KOG0502|consen   63 ESLLTVAVRSGNSDVAVQSAQLDPDAID--ETDPEGWSALLVAAPCGSVDKVSTTLTNGARG-NEVSLMPWSPLSLSVHQ  139 (296)
T ss_pred             CcccchhhhcCCcHHHHHhhccCCCCCC--CCCchhhhhhhhcCCCCCcceeeeeecccccC-CccccccCChhhHHHHH
Confidence            4556678899999999998887765432  35788999999999999999999999999998 89999999999999999


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCc
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQI  161 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  161 (316)
                      .+.+.       +..+.+   ..+|..|+.|.|||.||+.+|++.+|++|+++|+|   ++...++-.|+|.+|+..|..
T Consensus       140 l~L~~-------~~~~~~---n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd---p~~lgk~resALsLAt~ggyt  206 (296)
T KOG0502|consen  140 LHLDV-------VDLLVN---NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD---PDALGKYRESALSLATRGGYT  206 (296)
T ss_pred             HHHHH-------HHHHhh---ccccCccccCchHhHHHHhcCchHHHHHHHHcCCC---hhhhhhhhhhhHhHHhcCChH
Confidence            88776       555544   55788999999999999999999999999999999   888889999999999999999


Q ss_pred             ceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCccccccccc
Q 036662          162 EYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQ  219 (316)
Q Consensus       162 ~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~  219 (316)
                      ++|+       |+|..|.+|.|||-+|++    -++.++++.|++.||+...+...+..+.+++.
T Consensus       207 diV~lLL~r~vdVNvyDwNGgTpLlyAvr----gnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAV  267 (296)
T KOG0502|consen  207 DIVELLLTREVDVNVYDWNGGTPLLYAVR----GNHVKCVESLLNSGADVTQEDDSGYWIMDLAV  267 (296)
T ss_pred             HHHHHHHhcCCCcceeccCCCceeeeeec----CChHHHHHHHHhcCCCcccccccCCcHHHHHH
Confidence            9999       999999999999999999    79999999999999999988877766655443

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=7.7e-23  Score=165.09  Aligned_cols=124  Identities=19%  Similarity=0.210  Sum_probs=96.8

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHh------hCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCccc
Q 036662           34 NCPSETPLHVAALLRHKDFAKEILR------QKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASA  107 (316)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~------~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~  107 (316)
                      |..|.||||+|+..|+.++++.|+.      .|+++ +.+|..|+||||+|+..|+.++   ..+++++|++ .+.+++.
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~i-n~~d~~g~T~Lh~A~~~g~~~~---~~~ii~~Ll~-~gadin~   92 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL-NATDDAGQMCIHIAAEKHEAQL---AAEIIDHLIE-LGADINA   92 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhh-hccCCCCCcHHHHHHHcCChHH---HHHHHHHHHH-cCCCCCC
Confidence            6778888888888888888888754      24665 7788888888888888888421   1123788888 7777887


Q ss_pred             ccC-CCCcHHHHHHhcCCHHHHHHHHh-cCCCccccccccCCCCcHHHHHHhcCCcceec
Q 036662          108 PLI-WVETILHLCVKHNQLEALKVLLE-NTDDSEFLNAKDDYGMSILHLAVADKQIEYYN  165 (316)
Q Consensus       108 ~d~-~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  165 (316)
                      +|. +|+||||+|+.+++.+++++|++ .|++   ++.+|.+|+||||+|+..++.++++
T Consensus        93 ~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~---~~~~n~~g~tpL~~A~~~~~~~iv~  149 (169)
T PHA02741         93 QEMLEGDTALHLAAHRRDHDLAEWLCCQPGID---LHFCNADNKSPFELAIDNEDVAMMQ  149 (169)
T ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---CCcCCCCCCCHHHHHHHCCCHHHHH
Confidence            774 78888888888888888888886 4777   8888888888888888888877776

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=2e-23  Score=191.77  Aligned_cols=193  Identities=20%  Similarity=0.148  Sum_probs=124.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChh----------hHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCC
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRL----------ILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSR   70 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~----------~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~   70 (316)
                      |++-|..|++.|+.+.|..||+.-.-          ....+..|.+|.|+||-|+.+|+.+++++|++..+-+ +..|..
T Consensus         3 k~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~l-dl~d~k   81 (854)
T KOG0507|consen    3 KKQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALL-DLCDTK   81 (854)
T ss_pred             hhhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhh-hhhhcc
Confidence            34556667777777777777764210          0111234666777777777777777777777766665 666677


Q ss_pred             CCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCc
Q 036662           71 KSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMS  150 (316)
Q Consensus        71 g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t  150 (316)
                      |.+|||+|+..|+.++       ++.++. ..+..+..+.+|.||||.|+.+|+.+++.+|+++|+|   .-.+|+.+.|
T Consensus        82 g~~plhlaaw~g~~e~-------vkmll~-q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~ad---p~i~nns~~t  150 (854)
T KOG0507|consen   82 GILPLHLAAWNGNLEI-------VKMLLL-QTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNAD---PFIRNNSKET  150 (854)
T ss_pred             CcceEEehhhcCcchH-------HHHHHh-cccCCCcccccCcCccchhhhhcchHHHHHHHhcCCC---ccccCccccc
Confidence            7777777777777766       777766 5566666677777777777777777777777777776   5566666777


Q ss_pred             HHHHHHhcCCcceec---------------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccC
Q 036662          151 ILHLAVADKQIEYYN---------------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQ  209 (316)
Q Consensus       151 ~Lh~A~~~~~~~~v~---------------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~  209 (316)
                      +|.+|++.|+.++++               .-..++-.+-+|||+|++    +++.++++.|+++|.+.+....
T Consensus       151 ~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaak----ngh~~~~~~ll~ag~din~~t~  220 (854)
T KOG0507|consen  151 VLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAK----NGHVECMQALLEAGFDINYTTE  220 (854)
T ss_pred             HHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhh----cchHHHHHHHHhcCCCcccccc
Confidence            777777776666665               112233455666666666    6666666666666666665443

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=8.2e-23  Score=164.91  Aligned_cols=127  Identities=20%  Similarity=0.287  Sum_probs=66.5

Q ss_pred             ccCCCCCcHHHHHHHcCCcccccccHHHHHHHHH--hCCCCcccccCCCCcHHHHHHhcCC----HHHHHHHHhcCCCcc
Q 036662           66 ELDSRKSSALHIASQKRYVGMKSNRIDVLEELVR--ARPLAASAPLIWVETILHLCVKHNQ----LEALKVLLENTDDSE  139 (316)
Q Consensus        66 ~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~--~~~~~~~~~d~~g~t~Lh~A~~~g~----~~~v~~Ll~~g~~~~  139 (316)
                      .+|..|.||||+|++.|+.++    ++.+..++.  ..+..++.+|..|+||||+|+..|+    .+++++|+++|++  
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~----v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad--   89 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDI----IARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD--   89 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHH----HHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC--
Confidence            345555555555555555554    222222220  1344455555555555555555555    3555555555555  


Q ss_pred             ccccccC-CCCcHHHHHHhcCCcceec--------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCC
Q 036662          140 FLNAKDD-YGMSILHLAVADKQIEYYN--------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAI  203 (316)
Q Consensus       140 ~~~~~d~-~g~t~Lh~A~~~~~~~~v~--------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~  203 (316)
                       +|.+|. +|+||||+|+..++.++++        +++.+|.+|+||||+|..    .++.+++++|++.++.
T Consensus        90 -in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~----~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         90 -INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAID----NEDVAMMQILREIVAT  157 (169)
T ss_pred             -CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHH----CCCHHHHHHHHHHHHH
Confidence             555553 5555555555555555544        445555555555555555    4555555555555443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.89  E-value=2.1e-23  Score=191.57  Aligned_cols=197  Identities=20%  Similarity=0.178  Sum_probs=170.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 036662            3 SKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKR   82 (316)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g   82 (316)
                      |.||.|+.+|+.++++.|++..+-+...   |..|.+|||+|+..|+.++++.|+.++..+ +..+..|.||||.|++.|
T Consensus        51 Talhha~Lng~~~is~llle~ea~ldl~---d~kg~~plhlaaw~g~~e~vkmll~q~d~~-na~~~e~~tplhlaaqhg  126 (854)
T KOG0507|consen   51 TLLHHAVLNGQNQISKLLLDYEALLDLC---DTKGILPLHLAAWNGNLEIVKMLLLQTDIL-NAVNIENETPLHLAAQHG  126 (854)
T ss_pred             hHHHHHHhcCchHHHHHHhcchhhhhhh---hccCcceEEehhhcCcchHHHHHHhcccCC-CcccccCcCccchhhhhc
Confidence            7899999999999999999998876443   688999999999999999999999999665 889999999999999999


Q ss_pred             CcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCcc-----ccccccCCCCcHHHHHHh
Q 036662           83 YVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSE-----FLNAKDDYGMSILHLAVA  157 (316)
Q Consensus        83 ~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~-----~~~~~d~~g~t~Lh~A~~  157 (316)
                      |.++       +.+|++ ++++.-.+|+.++|+|.+|++.|+.++|+.|++....-.     --..++..+-+|||+|++
T Consensus       127 h~dv-------v~~Ll~-~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaak  198 (854)
T KOG0507|consen  127 HLEV-------VFYLLK-KNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAK  198 (854)
T ss_pred             chHH-------HHHHHh-cCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhh
Confidence            9998       999999 888888899999999999999999999999998632200     022456678899999999


Q ss_pred             cCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCcccccc
Q 036662          158 DKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVS  216 (316)
Q Consensus       158 ~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~  216 (316)
                      +|+.++++       ++|...+.| |+||.|+.    .+..+++++|++.|......+....+.++
T Consensus       199 ngh~~~~~~ll~ag~din~~t~~g-talheaal----cgk~evvr~ll~~gin~h~~n~~~qtald  259 (854)
T KOG0507|consen  199 NGHVECMQALLEAGFDINYTTEDG-TALHEAAL----CGKAEVVRFLLEIGINTHIKNQHGQTALD  259 (854)
T ss_pred             cchHHHHHHHHhcCCCcccccccc-hhhhhHhh----cCcchhhhHHHhhccccccccccchHHHH
Confidence            99999988       888888777 99999999    78999999999999998877776666554

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.88  E-value=1.9e-22  Score=154.60  Aligned_cols=133  Identities=23%  Similarity=0.156  Sum_probs=122.9

Q ss_pred             HHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHH
Q 036662           40 PLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLC  119 (316)
Q Consensus        40 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  119 (316)
                      .+.+|+..+.+.-|+.||+..++..|.+|.+|.||||.|+.+|+.++       ++.|+. .+++.+.+...||||||-|
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~di-------v~~ll~-~gAn~~a~T~~GWTPLhSA  137 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDI-------VHELLL-SGANKEAKTNEGWTPLHSA  137 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHH-------HHHHHH-ccCCcccccccCccchhhh
Confidence            46899999999999999999999999999999999999999999998       999999 9999999999999999999


Q ss_pred             HhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec---------ccccccCCCCCHHHHHHh
Q 036662          120 VKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN---------QSECCYANGFTAWDILAN  183 (316)
Q Consensus       120 ~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~---------~~~~~~~~g~TpL~~a~~  183 (316)
                      ++.++.+++..|+++|+|   +|.+.....||||+|+...+....-         +...+++.+.||+++|.+
T Consensus       138 ckWnN~~va~~LLqhgaD---VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARR  207 (228)
T KOG0512|consen  138 CKWNNFEVAGRLLQHGAD---VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARR  207 (228)
T ss_pred             hcccchhHHHHHHhccCc---ccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHH
Confidence            999999999999999999   9999999999999999876543222         677789999999999988

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=2.9e-22  Score=159.33  Aligned_cols=127  Identities=13%  Similarity=0.040  Sum_probs=89.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCh--h--hHHhhhcCCCCCCHHHHHHhcCCH---HHHHHHHhhCCCcccccC-CCCC
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDR--L--ILERAAMNCPSETPLHVAALLRHK---DFAKEILRQKPGIAGELD-SRKS   72 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~--~--~~~~~~~~~~g~t~Lh~A~~~g~~---~~v~~Ll~~~~~~~~~~d-~~g~   72 (316)
                      ++||||+|++.|+..  ..+...+.  +  ......+|..|.||||+|+..|+.   +++++|+++|+++ +.+| ..|+
T Consensus        17 g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~~~~~g~   93 (154)
T PHA02736         17 GENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGKERVFGN   93 (154)
T ss_pred             CCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-cccCCCCCC
Confidence            468888888888732  22222111  1  011123477788888888888776   4577788888887 6666 4788


Q ss_pred             cHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 036662           73 SALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDD  137 (316)
Q Consensus        73 tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~  137 (316)
                      ||||+|+..|+.++       +++|+++.+.+++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus        94 T~Lh~A~~~~~~~i-------~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736         94 TPLHIAVYTQNYEL-------ATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             cHHHHHHHhCCHHH-------HHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            88888888887777       88888745777788888888888888888888888888888776

>PHA02792 ankyrin-like protein; Provisional

Probab=99.88  E-value=9.3e-22  Score=183.23  Aligned_cols=188  Identities=12%  Similarity=0.062  Sum_probs=151.7

Q ss_pred             CCcHHHHHHHcC-------CHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcC--CHHHHHHHHhhC-----------
Q 036662            1 MESKLYEAALAG-------SVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLR--HKDFAKEILRQK-----------   60 (316)
Q Consensus         1 m~t~L~~A~~~g-------~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~-----------   60 (316)
                      +.||||+|+..+       +.++++.|+++|+++..   +|..|.||||+|+...  +.|++++|++..           
T Consensus       175 g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~---~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~  251 (631)
T PHA02792        175 GKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRY---YTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILS  251 (631)
T ss_pred             CCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCc---cCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHH
Confidence            579999999999       89999999999998854   4889999999999998  777888776421           


Q ss_pred             --------------------------------------------------------------------------------
Q 036662           61 --------------------------------------------------------------------------------   60 (316)
Q Consensus        61 --------------------------------------------------------------------------------   60 (316)
                                                                                                      
T Consensus       252 ~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~G  331 (631)
T PHA02792        252 NYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEG  331 (631)
T ss_pred             HHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCC
Confidence                                                                                            


Q ss_pred             CCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCC--CcHHHHHHhcCCH---HHHHHHHhcC
Q 036662           61 PGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWV--ETILHLCVKHNQL---EALKVLLENT  135 (316)
Q Consensus        61 ~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g--~t~Lh~A~~~g~~---~~v~~Ll~~g  135 (316)
                      ++.   .......+++.|+..|+.++       +++|++ +|++++.+|.+|  .||||+|..+...   +++++|+++|
T Consensus       332 a~~---~r~~~~n~~~~Aa~~gn~eI-------VelLIs-~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~G  400 (631)
T PHA02792        332 ATL---YRFKHINKYFQKFDNRDPKV-------VEYILK-NGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYI  400 (631)
T ss_pred             Ccc---ccCCcchHHHHHHHcCCHHH-------HHHHHH-cCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcC
Confidence            111   01123445666766666666       999999 899999988775  6999998877664   4688999999


Q ss_pred             CCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCC------CcHHHHHHHHHHhCC
Q 036662          136 DDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRK------MKDWEIGELLRRAGA  202 (316)
Q Consensus       136 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~------~~~~~i~~~Ll~~ga  202 (316)
                      ++   +|.+|..|+||||+|+..++.++++       +++.+|..|+|||++|......      ....++++.|+++|.
T Consensus       401 AD---IN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p  477 (631)
T PHA02792        401 DD---INKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLP  477 (631)
T ss_pred             Cc---cccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCC
Confidence            99   9999999999999999999999988       8999999999999998651110      233568999999997


Q ss_pred             Ccc
Q 036662          203 ISA  205 (316)
Q Consensus       203 ~~~  205 (316)
                      +..
T Consensus       478 ~i~  480 (631)
T PHA02792        478 TIE  480 (631)
T ss_pred             Chh
Confidence            763

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.88  E-value=9.9e-23  Score=181.12  Aligned_cols=191  Identities=20%  Similarity=0.217  Sum_probs=128.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCC
Q 036662            4 KLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRY   83 (316)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~   83 (316)
                      .+..|+..|+.+-|+.|+..+..+   +..+.+|.|+||-+|...+.+||++|+++|+++ +..|.+||||||.|+.-||
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~---~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~  118 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASP---NLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGY  118 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCc---cccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhccccc
Confidence            367789999999999999999776   445899999999999999999999999999998 9999999999999999988


Q ss_pred             cccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHH--------------------------HHHHhcCCC
Q 036662           84 VGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEAL--------------------------KVLLENTDD  137 (316)
Q Consensus        84 ~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v--------------------------~~Ll~~g~~  137 (316)
                      ..+       +++|++ .++++...+.+|..|+.++...-..+++                          +..+..|.+
T Consensus       119 ~~i-------~~~li~-~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~  190 (527)
T KOG0505|consen  119 LNI-------VEYLIQ-HGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAE  190 (527)
T ss_pred             HHH-------HHHHHH-hhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccc
Confidence            888       888888 6666655555554444443321111111                          111123333


Q ss_pred             ccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCC
Q 036662          138 SEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQ  210 (316)
Q Consensus       138 ~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~  210 (316)
                         .+..+..|-|.||.|+.+|..+..+       +++++|.+|+||||.|+.    .+..+++++|+++|++.......
T Consensus       191 ---~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~----Wg~~~~~elL~~~ga~~d~~t~~  263 (527)
T KOG0505|consen  191 ---LDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAH----WGQEDACELLVEHGADMDAKTKM  263 (527)
T ss_pred             ---ccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHH----hhhHhHHHHHHHhhcccchhhhc
Confidence               4444444556666655555555544       555555556666665555    55555555555555555544443


Q ss_pred             ccc
Q 036662          211 PAT  213 (316)
Q Consensus       211 ~~~  213 (316)
                      +..
T Consensus       264 g~~  266 (527)
T KOG0505|consen  264 GET  266 (527)
T ss_pred             CCC
Confidence            333

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=4.8e-22  Score=158.12  Aligned_cols=134  Identities=16%  Similarity=0.115  Sum_probs=103.6

Q ss_pred             hhcCCCCCCHHHHHHhcCCHHHHHHHHhhCC--C----cccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCC
Q 036662           31 AAMNCPSETPLHVAALLRHKDFAKEILRQKP--G----IAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLA  104 (316)
Q Consensus        31 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~--~----~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~  104 (316)
                      +.+|..|.||||+|+..|+.  ++++...+.  +    ....+|..|+||||+|+..|+.+.    .+++++|++ .+.+
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~----~e~v~~Ll~-~gad   83 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADP----QEKLKLLME-WGAD   83 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhH----HHHHHHHHH-cCCC
Confidence            34588999999999999983  444433322  1    224578999999999999998753    344888999 8889


Q ss_pred             ccccc-CCCCcHHHHHHhcCCHHHHHHHHh-cCCCccccccccCCCCcHHHHHHhcCCcceecccccccCCCCCHHHHHH
Q 036662          105 ASAPL-IWVETILHLCVKHNQLEALKVLLE-NTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANGFTAWDILA  182 (316)
Q Consensus       105 ~~~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~~~~~~~~g~TpL~~a~  182 (316)
                      ++.+| ..|+||||+|+..|+.+++++|++ .|++   ++.+|..|.||||+|+..                        
T Consensus        84 in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d---~n~~~~~g~tpL~~A~~~------------------------  136 (154)
T PHA02736         84 INGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN---MEILNYAFKTPYYVACER------------------------  136 (154)
T ss_pred             ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC---CccccCCCCCHHHHHHHc------------------------
Confidence            99988 489999999999999999999997 4887   777777776666666654                        


Q ss_pred             hccCCCcHHHHHHHHHHhCCCc
Q 036662          183 NSKRKMKDWEIGELLRRAGAIS  204 (316)
Q Consensus       183 ~~~~~~~~~~i~~~Ll~~ga~~  204 (316)
                            ++.+++++|+++|++.
T Consensus       137 ------~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736        137 ------HDAKMMNILRAKGAQC  152 (154)
T ss_pred             ------CCHHHHHHHHHcCCCC
Confidence                  4566788888888775

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.87  E-value=1.9e-22  Score=179.40  Aligned_cols=175  Identities=17%  Similarity=0.154  Sum_probs=146.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      +.|+||.+|...|.++|++|++.+++++.   .|..|+||||.|+.+||..++++|+.+|+++ ...|..|..|+-++..
T Consensus        73 glTalhq~~id~~~e~v~~l~e~ga~Vn~---~d~e~wtPlhaaascg~~~i~~~li~~gA~~-~avNsdg~~P~dl~e~  148 (527)
T KOG0505|consen   73 GLTALHQACIDDNLEMVKFLVENGANVNA---QDNEGWTPLHAAASCGYLNIVEYLIQHGANL-LAVNSDGNMPYDLAED  148 (527)
T ss_pred             cchhHHHHHhcccHHHHHHHHHhcCCccc---cccccCCcchhhcccccHHHHHHHHHhhhhh-hhccCCCCCccccccC
Confidence            35899999999999999999999999954   4999999999999999999999999999998 5667777777655432


Q ss_pred             cCCccc-------------------ccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccc
Q 036662           81 KRYVGM-------------------KSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFL  141 (316)
Q Consensus        81 ~g~~~~-------------------~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~  141 (316)
                      -...++                   .+--..-++..+. .+...+.++..|.|.||+|+.+|..++.++|++.|.+   +
T Consensus       149 ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~-~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~---~  224 (527)
T KOG0505|consen  149 EATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLN-AGAELDARHARGATALHVAAANGYTEVAALLLQAGYS---V  224 (527)
T ss_pred             cchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHh-ccccccccccccchHHHHHHhhhHHHHHHHHHHhccC---c
Confidence            222222                   1111112334444 6777777888899999999999999999999999999   9


Q ss_pred             ccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHh
Q 036662          142 NAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILAN  183 (316)
Q Consensus       142 ~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~  183 (316)
                      +.+|.+|+||||.|+.-|+.+.++       +.+..+..|.||+++|..
T Consensus       225 ~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  225 NIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             ccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchhh
Confidence            999999999999999999998888       899999999999999877

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.87  E-value=9.2e-22  Score=150.84  Aligned_cols=142  Identities=20%  Similarity=0.175  Sum_probs=126.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCC
Q 036662            4 KLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRY   83 (316)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~   83 (316)
                      .+.+|+..+.+..|+.||+..++.  .+.+|.+|.||||.|+++||.+||+.|+..|+++ +.+-..||||||-||..++
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~--vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANH--VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhcccc--ccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccc
Confidence            467899999999999999998854  4668999999999999999999999999999999 8899999999999999999


Q ss_pred             cccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCC-HHHHHHHH-hcCCCccccccccCCCCcHHHHHHhcC
Q 036662           84 VGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQ-LEALKVLL-ENTDDSEFLNAKDDYGMSILHLAVADK  159 (316)
Q Consensus        84 ~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~-~~~v~~Ll-~~g~~~~~~~~~d~~g~t~Lh~A~~~~  159 (316)
                      .++       +-.||+ +++++++.....+||||+|+.+++ ...+++|+ ..+.+   .-.++..+.||+.+|-+-+
T Consensus       143 ~~v-------a~~LLq-hgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~---pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  143 FEV-------AGRLLQ-HGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIH---PGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             hhH-------HHHHHh-ccCcccccccccchhhHHhhcccchHHHHHHHhhccccC---hhhhcCccchHHHHHHHhh
Confidence            999       999999 999999999999999999998876 45666665 45555   6677889999999997754

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=2e-21  Score=168.33  Aligned_cols=137  Identities=13%  Similarity=0.038  Sum_probs=118.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhh-cCCCCCCHHHHHHhcCCHHHHHHHHhhCCCccccc-CCCCCcHHHHHH
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAA-MNCPSETPLHVAALLRHKDFAKEILRQKPGIAGEL-DSRKSSALHIAS   79 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-d~~g~tpLh~A~   79 (316)
                      .++||.|++.|+.++++.|+++|++++..+. .+..|.||||+|+..|+.+++++|+++|+++ +.+ +..|.||||+|+
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~~g~TpLh~Aa  112 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEEAKITPLYISV  112 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCCCCCCHHHHHH
Confidence            4789999999999999999999998754321 1458999999999999999999999999999 765 568999999999


Q ss_pred             HcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 036662           80 QKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA  155 (316)
Q Consensus        80 ~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A  155 (316)
                      ..|+.++       +++|++ .+++++.+|..|+||||+|+..++.+++..+..  .      ..+..+.+|++++
T Consensus       113 ~~~~~ei-------vklLL~-~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~  172 (300)
T PHA02884        113 LHGCLKC-------LEILLS-YGADINIQTNDMVTPIELALMICNNFLAFMICD--N------EISNFYKHPKKIL  172 (300)
T ss_pred             HcCCHHH-------HHHHHH-CCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcC--C------cccccccChhhhh
Confidence            9999988       999999 899999999999999999999999988766653  2      2467778888865

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=8.2e-22  Score=167.41  Aligned_cols=150  Identities=19%  Similarity=0.183  Sum_probs=133.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcC-----CHHHHHHHHhhCCCcccccCCCCCcHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLR-----HKDFAKEILRQKPGIAGELDSRKSSAL   75 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g-----~~~~v~~Ll~~~~~~~~~~d~~g~tpL   75 (316)
                      ++|+||+|+..+|+++|+.||+.|.  .+.+.+|.-|.||..+|+...     +.++|+.|.+.|- ++-.....|+|+|
T Consensus       268 GNTALHYsVSHaNF~VV~~LLDSgv--C~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn-VNaKAsQ~gQTAL  344 (452)
T KOG0514|consen  268 GNTALHYAVSHANFDVVSILLDSGV--CDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD-VNAKASQHGQTAL  344 (452)
T ss_pred             CCeeeeeeecccchHHHHHHhccCc--ccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC-cchhhhhhcchhh
Confidence            5899999999999999999999875  333556889999999998763     7789999998764 3355567899999


Q ss_pred             HHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhc-CCCccccccccCCCCcHHHH
Q 036662           76 HIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLEN-TDDSEFLNAKDDYGMSILHL  154 (316)
Q Consensus        76 h~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~d~~g~t~Lh~  154 (316)
                      ++|+..|+.++       ++.||. |++++|..|.+|-|+|+.|+++||.|++++|+.. ++|   +...|.+|-|+|..
T Consensus       345 MLAVSHGr~d~-------vk~LLa-cgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd---~sLtD~DgSTAl~I  413 (452)
T KOG0514|consen  345 MLAVSHGRVDM-------VKALLA-CGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD---ISLTDVDGSTALSI  413 (452)
T ss_pred             hhhhhcCcHHH-------HHHHHH-ccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccc---ceeecCCCchhhhh
Confidence            99999999999       999999 9999999999999999999999999999999975 456   88899999999999


Q ss_pred             HHhcCCccee
Q 036662          155 AVADKQIEYY  164 (316)
Q Consensus       155 A~~~~~~~~v  164 (316)
                      |...|+.+|.
T Consensus       414 Aleagh~eIa  423 (452)
T KOG0514|consen  414 ALEAGHREIA  423 (452)
T ss_pred             HHhcCchHHH
Confidence            9999998874

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.85  E-value=6.5e-22  Score=163.39  Aligned_cols=132  Identities=18%  Similarity=0.196  Sum_probs=68.9

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCC
Q 036662           34 NCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVE  113 (316)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~  113 (316)
                      |..|.+|||+||+.||..+|+.|+.+|+.+ |..|.-..||||+|+..||.++       |+.|++ +.+++|..+..|.
T Consensus        31 ddhgfsplhwaakegh~aivemll~rgarv-n~tnmgddtplhlaaahghrdi-------vqkll~-~kadvnavnehgn  101 (448)
T KOG0195|consen   31 DDHGFSPLHWAAKEGHVAIVEMLLSRGARV-NSTNMGDDTPLHLAAAHGHRDI-------VQKLLS-RKADVNAVNEHGN  101 (448)
T ss_pred             cccCcchhhhhhhcccHHHHHHHHhccccc-ccccCCCCcchhhhhhcccHHH-------HHHHHH-HhcccchhhccCC
Confidence            444555555555555555555555555554 4444444455555555555444       555555 4444555555555


Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceecccccccCCCCCHHHHHHhccCCCcHHHH
Q 036662          114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANGFTAWDILANSKRKMKDWEI  193 (316)
Q Consensus       114 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~~~~~~~~g~TpL~~a~~~~~~~~~~~i  193 (316)
                      ||||+||..|+..+.+-|+..|+                             .+++.|++|.|||+.|.-    .-...+
T Consensus       102 tplhyacfwgydqiaedli~~ga-----------------------------~v~icnk~g~tpldkakp----~l~~~l  148 (448)
T KOG0195|consen  102 TPLHYACFWGYDQIAEDLISCGA-----------------------------AVNICNKKGMTPLDKAKP----MLKNTL  148 (448)
T ss_pred             CchhhhhhhcHHHHHHHHHhccc-----------------------------eeeecccCCCCchhhhch----HHHHHH
Confidence            55555555555555555555444                             356666777777777654    222334


Q ss_pred             HHHHHHhCCCcccc
Q 036662          194 GELLRRAGAISAKE  207 (316)
Q Consensus       194 ~~~Ll~~ga~~~~~  207 (316)
                      .+.-.++|..++.-
T Consensus       149 ~e~aek~gq~~nri  162 (448)
T KOG0195|consen  149 LEIAEKHGQSPNRI  162 (448)
T ss_pred             HHHHHHhCCCCCcc
Confidence            44445667766643

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.84  E-value=1.4e-20  Score=185.22  Aligned_cols=159  Identities=18%  Similarity=0.101  Sum_probs=122.1

Q ss_pred             CCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccC--------------CCCCcHHHHHHHcCCcccccccHHHHHHHHHh
Q 036662           35 CPSETPLHVAALLRHKDFAKEILRQKPGIAGELD--------------SRKSSALHIASQKRYVGMKSNRIDVLEELVRA  100 (316)
Q Consensus        35 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d--------------~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~  100 (316)
                      ..|.||||+|+..|+.++|++|+++|+++ +.++              ..|.||||.|+..|+.++       +++|++ 
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv-~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~i-------v~lLl~-  196 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASV-PARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSI-------VALLSE-  196 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHH-------HHHHhc-
Confidence            35999999999999999999999999998 4432              369999999999999988       999999 


Q ss_pred             CCCCcccccCCCCcHHHHHHhcC---------CHHHHHHHHhcCCCcccc----ccccCCCCcHHHHHHhcCCcceec--
Q 036662          101 RPLAASAPLIWVETILHLCVKHN---------QLEALKVLLENTDDSEFL----NAKDDYGMSILHLAVADKQIEYYN--  165 (316)
Q Consensus       101 ~~~~~~~~d~~g~t~Lh~A~~~g---------~~~~v~~Ll~~g~~~~~~----~~~d~~g~t~Lh~A~~~~~~~~v~--  165 (316)
                      +|++++..|..|+||||+|+..+         ..++.+++++.++.....    +.+|.+|.||||+|+..|+.++++  
T Consensus       197 ~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lL  276 (743)
T TIGR00870       197 DPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLK  276 (743)
T ss_pred             CCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHH
Confidence            89999999999999999999987         234667777665542213    677999999999999999999988  


Q ss_pred             -----ccccccCCCCCHHHHHHhcc----CCCcHHHHHHHHHHhCC
Q 036662          166 -----QSECCYANGFTAWDILANSK----RKMKDWEIGELLRRAGA  202 (316)
Q Consensus       166 -----~~~~~~~~g~TpL~~a~~~~----~~~~~~~i~~~Ll~~ga  202 (316)
                           ..+........|.+.+..-.    ...+...+.+++...+.
T Consensus       277 L~~~~~~kk~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~  322 (743)
T TIGR00870       277 LAIKYKQKKFVAWPNGQQLLSLYWLEELDGWRRKQSVLELIVVFVI  322 (743)
T ss_pred             HHHHHhcceeeccCcchHhHhhhccccCCcccccccHHHHHHHHHH
Confidence                 22333556667777654421    11122245566665554

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.81  E-value=7.5e-21  Score=157.14  Aligned_cols=123  Identities=23%  Similarity=0.230  Sum_probs=108.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 036662            3 SKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKR   82 (316)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g   82 (316)
                      +|||+||+.|+..+|+.|+++|+.++   ..+....||||+|+..||-++|+.|+++.+|+ |..|..|.||||+||..|
T Consensus        36 splhwaakegh~aivemll~rgarvn---~tnmgddtplhlaaahghrdivqkll~~kadv-navnehgntplhyacfwg  111 (448)
T KOG0195|consen   36 SPLHWAAKEGHVAIVEMLLSRGARVN---STNMGDDTPLHLAAAHGHRDIVQKLLSRKADV-NAVNEHGNTPLHYACFWG  111 (448)
T ss_pred             chhhhhhhcccHHHHHHHHhcccccc---cccCCCCcchhhhhhcccHHHHHHHHHHhccc-chhhccCCCchhhhhhhc
Confidence            79999999999999999999999884   44788889999999999999999999999999 999999999999999999


Q ss_pred             CcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 036662           83 YVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDD  137 (316)
Q Consensus        83 ~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~  137 (316)
                      +-.+       .+-|+. +++.++..+++|.|||..|--.-...+.+.--++|.+
T Consensus       112 ydqi-------aedli~-~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~  158 (448)
T KOG0195|consen  112 YDQI-------AEDLIS-CGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQS  158 (448)
T ss_pred             HHHH-------HHHHHh-ccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCC
Confidence            9998       999999 9999999999999999987543333333333456766

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.79  E-value=5.8e-19  Score=126.88  Aligned_cols=88  Identities=26%  Similarity=0.336  Sum_probs=53.3

Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHH
Q 036662           41 LHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCV  120 (316)
Q Consensus        41 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  120 (316)
                      ||+|+..|+.++++.|++.++++ +.    |.||||+|+..|+.++       +++|++ ++.+++.+|.+|+||||+|+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~-~~----~~~~l~~A~~~~~~~~-------~~~Ll~-~g~~~~~~~~~g~t~L~~A~   67 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI-NL----GNTALHYAAENGNLEI-------VKLLLE-NGADINSQDKNGNTALHYAA   67 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT-TS----SSBHHHHHHHTTTHHH-------HHHHHH-TTTCTT-BSTTSSBHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC-CC----CCCHHHHHHHcCCHHH-------HHHHHH-hcccccccCCCCCCHHHHHH
Confidence            56666666666666666666555 22    5666666666666655       666666 55566666666666666666


Q ss_pred             hcCCHHHHHHHHhcCCCccccccc
Q 036662          121 KHNQLEALKVLLENTDDSEFLNAK  144 (316)
Q Consensus       121 ~~g~~~~v~~Ll~~g~~~~~~~~~  144 (316)
                      .+|+.+++++|+++|++   ++.+
T Consensus        68 ~~~~~~~~~~Ll~~g~~---~~~~   88 (89)
T PF12796_consen   68 ENGNLEIVKLLLEHGAD---VNIR   88 (89)
T ss_dssp             HTTHHHHHHHHHHTTT----TTSS
T ss_pred             HcCCHHHHHHHHHcCCC---CCCc
Confidence            66666666666666666   5544

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.79  E-value=4.7e-20  Score=174.99  Aligned_cols=195  Identities=19%  Similarity=0.201  Sum_probs=145.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      +|+|-.||+.|+.|.|+.|+.+|+++.++   |+.|.+||.+|+..||..+|+.|+++.+++..+.|..+.|+|-+||..
T Consensus       758 ~t~LT~acaggh~e~vellv~rganiehr---dkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsg  834 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEVELLVVRGANIEHR---DKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSG  834 (2131)
T ss_pred             cccccccccCccHHHHHHHHHhccccccc---ccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCC
Confidence            78999999999999999999999998554   999999999999999999999999999999888899999999999999


Q ss_pred             CCccc--------------------------ccccHHHHHHHHHhCCCCccccc--CCCCcHHHHHHhcCCHHHHHHHHh
Q 036662           82 RYVGM--------------------------KSNRIDVLEELVRARPLAASAPL--IWVETILHLCVKHNQLEALKVLLE  133 (316)
Q Consensus        82 g~~~~--------------------------~~~~~~iv~~Ll~~~~~~~~~~d--~~g~t~Lh~A~~~g~~~~v~~Ll~  133 (316)
                      |+.++                          .-|.++||+.|+. .+..++.+.  +.|-.||.+|..+||.+.++.|++
T Consensus       835 gr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS-~GseInSrtgSklgisPLmlatmngh~~at~~ll~  913 (2131)
T KOG4369|consen  835 GRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLS-SGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQ  913 (2131)
T ss_pred             CcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhh-cccccccccccccCcchhhhhhhccccHHHHHHhc
Confidence            99988                          3333444444444 333333322  334444444444444444444444


Q ss_pred             cCCCccccccc-cCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcc
Q 036662          134 NTDDSEFLNAK-DDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISA  205 (316)
Q Consensus       134 ~g~~~~~~~~~-d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~  205 (316)
                      .|.|   +|.+ ..+-+|+|-+|+..|+.+++.       ++.++-+.|.|||+-++.    .++.|+-++|+.+|||.+
T Consensus       914 ~gsd---iNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~As----gGyvdvg~~li~~gad~n  986 (2131)
T KOG4369|consen  914 PGSD---INAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMAS----GGYVDVGNLLIAAGADTN  986 (2131)
T ss_pred             ccch---hccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhc----CCccccchhhhhcccccc
Confidence            4444   4433 234455555555555555555       677888899999999988    799999999999999986


Q ss_pred             cc
Q 036662          206 KE  207 (316)
Q Consensus       206 ~~  207 (316)
                      ..
T Consensus       987 as  988 (2131)
T KOG4369|consen  987 AS  988 (2131)
T ss_pred             cC
Confidence            53

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.79  E-value=4.6e-19  Score=165.09  Aligned_cols=183  Identities=25%  Similarity=0.295  Sum_probs=150.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcChhh------HHhhhcCCCCCCHHHHHHhc---CCHHHHHHHHhhCCCccccc----CC
Q 036662            3 SKLYEAALAGSVTSLLEFLQKDRLI------LERAAMNCPSETPLHVAALL---RHKDFAKEILRQKPGIAGEL----DS   69 (316)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~------~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~----d~   69 (316)
                      .++..|...|.++....+++.+...      .+.+.+...|.|.||.|..+   ++.++++.|++.-|.++|..    ..
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            4567778888888888877765321      22233467899999999985   46699999999988765432    46


Q ss_pred             CCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccc---------c--------------CCCCcHHHHHHhcCCHH
Q 036662           70 RKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAP---------L--------------IWVETILHLCVKHNQLE  126 (316)
Q Consensus        70 ~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~---------d--------------~~g~t~Lh~A~~~g~~~  126 (316)
                      .|.||||+|+.+.+.++       |++|++ .+++++++         |              ..|+.||..|+.-++.|
T Consensus       183 ~GqSaLHiAIv~~~~~~-------V~lLl~-~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~e  254 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAEL-------VRLLLA-AGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPE  254 (782)
T ss_pred             cCcchHHHHHHhccHHH-------HHHHHH-cCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHH
Confidence            79999999999999998       999999 88887764         1              24789999999999999


Q ss_pred             HHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-------c--cccccCCCCCHHHHHHhccCCCcHHHHHHHH
Q 036662          127 ALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------Q--SECCYANGFTAWDILANSKRKMKDWEIGELL  197 (316)
Q Consensus       127 ~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~--~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~L  197 (316)
                      ++++|+++|+|   ++.+|.+|||.||..+..-..++..       +  ..++|++|.|||.+|++    .+..++.+.+
T Consensus       255 ivrlLl~~gAd---~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAak----lGk~emf~~i  327 (782)
T KOG3676|consen  255 IVRLLLAHGAD---PNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAK----LGKKEMFQHI  327 (782)
T ss_pred             HHHHHHhcCCC---CCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHH----hhhHHHHHHH
Confidence            99999999999   9999999999999988764444333       3  77899999999999999    8999999999


Q ss_pred             HHh
Q 036662          198 RRA  200 (316)
Q Consensus       198 l~~  200 (316)
                      ++.
T Consensus       328 le~  330 (782)
T KOG3676|consen  328 LER  330 (782)
T ss_pred             HHh
Confidence            887

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.78  E-value=1.5e-18  Score=124.78  Aligned_cols=89  Identities=26%  Similarity=0.264  Sum_probs=79.8

Q ss_pred             HHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCc
Q 036662            5 LYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYV   84 (316)
Q Consensus         5 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~   84 (316)
                      ||+|++.|+.++++.|++.+.++      +. |+||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+.+|+.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~------~~-~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADI------NL-GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTT------TS-SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCC------CC-CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCH
Confidence            79999999999999999988765      33 899999999999999999999999998 88999999999999999999


Q ss_pred             ccccccHHHHHHHHHhCCCCccccc
Q 036662           85 GMKSNRIDVLEELVRARPLAASAPL  109 (316)
Q Consensus        85 ~~~~~~~~iv~~Ll~~~~~~~~~~d  109 (316)
                      ++       +++|++ ++.+++.+|
T Consensus        73 ~~-------~~~Ll~-~g~~~~~~n   89 (89)
T PF12796_consen   73 EI-------VKLLLE-HGADVNIRN   89 (89)
T ss_dssp             HH-------HHHHHH-TTT-TTSS-
T ss_pred             HH-------HHHHHH-cCCCCCCcC
Confidence            88       999999 788887654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.77  E-value=4.1e-18  Score=129.68  Aligned_cols=120  Identities=28%  Similarity=0.390  Sum_probs=102.4

Q ss_pred             cCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCC
Q 036662           33 MNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWV  112 (316)
Q Consensus        33 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g  112 (316)
                      +|..|.||||+|+..|+.++++.|++.+++. +..|..|.||||.|+..+..++       ++.|++ .+..++..+..|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~~~~~~~-------~~~ll~-~~~~~~~~~~~~   73 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAKNGHLEI-------VKLLLE-KGADVNARDKDG   73 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCHHH-------HHHHHH-cCCCccccCCCC
Confidence            3677899999999999999999999999887 7788899999999999888887       999998 666777778889


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCccee
Q 036662          113 ETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYY  164 (316)
Q Consensus       113 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v  164 (316)
                      .||+|+|+..++.+++++|++.+.+   ++..|..|.||+|+|...++.+++
T Consensus        74 ~~~l~~a~~~~~~~~~~~L~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~  122 (126)
T cd00204          74 NTPLHLAARNGNLDVVKLLLKHGAD---VNARDKDGRTPLHLAAKNGHLEVV  122 (126)
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCC---CcccCCCCCCHHHHHHhcCCHHHH
Confidence            9999999999999999999998877   788888888888888887665543

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.76  E-value=4.8e-18  Score=158.36  Aligned_cols=174  Identities=18%  Similarity=0.171  Sum_probs=144.4

Q ss_pred             CCcHHHHHHHc---CCHHHHHHHHHcChhhHHhhhc--CCCCCCHHHHHHhcCCHHHHHHHHhhCCCccccc--------
Q 036662            1 MESKLYEAALA---GSVTSLLEFLQKDRLILERAAM--NCPSETPLHVAALLRHKDFAKEILRQKPGIAGEL--------   67 (316)
Q Consensus         1 m~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~--~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~--------   67 (316)
                      ++|.||.|..+   ++.++++.|++..+++......  ...|.||||+|+.+.+.++|++|++.|+|+ +++        
T Consensus       143 GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV-~aRa~G~FF~~  221 (782)
T KOG3676|consen  143 GETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADV-HARACGAFFCP  221 (782)
T ss_pred             hhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCch-hhHhhccccCc
Confidence            58999999884   4568999999988765432222  347999999999999999999999999997 331        


Q ss_pred             -C--------------CCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHH
Q 036662           68 -D--------------SRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLL  132 (316)
Q Consensus        68 -d--------------~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  132 (316)
                       |              ..|+.||-+||-.++.++       +++|++ ++++++.+|.+|+|.||..+.+-..++.++++
T Consensus       222 ~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~ei-------vrlLl~-~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L  293 (782)
T KOG3676|consen  222 DDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEI-------VRLLLA-HGADPNAQDSNGNTVLHMLVIHFVTEMYDLAL  293 (782)
T ss_pred             ccccccccccCCcceeeeccCchHHHHHcCCHHH-------HHHHHh-cCCCCCccccCCChHHHHHHHHHHHHHHHHHH
Confidence             1              247889999999988888       999999 99999999999999999999999999999999


Q ss_pred             hcCCCccccccccCCCCcHHHHHHhcCCcceec---------------------ccccccC--CCCCHHHHHHhc
Q 036662          133 ENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN---------------------QSECCYA--NGFTAWDILANS  184 (316)
Q Consensus       133 ~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~---------------------~~~~~~~--~g~TpL~~a~~~  184 (316)
                      ++|++ .+...++.+|-|||-+|++.|+.++.+                     +++..|.  +..+.|.+.+.+
T Consensus       294 ~~ga~-~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg  367 (782)
T KOG3676|consen  294 ELGAN-ALEHVRNNQGLTPLTLAAKLGKKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYG  367 (782)
T ss_pred             hcCCC-ccccccccCCCChHHHHHHhhhHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcC
Confidence            99998 556778899999999999999988665                     3444443  456777777664

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.75  E-value=2.3e-17  Score=125.48  Aligned_cols=120  Identities=26%  Similarity=0.315  Sum_probs=110.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      +.||||.|+..|+.++++.|++.+.+.   ...+..|.||||.|+..++.++++.|++.|+++ +..|..|.||+|+|+.
T Consensus         7 g~t~l~~a~~~~~~~~i~~li~~~~~~---~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~a~~   82 (126)
T cd00204           7 GRTPLHLAASNGHLEVVKLLLENGADV---NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHLAAR   82 (126)
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCC---CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHH
Confidence            479999999999999999999999876   345889999999999999999999999999887 7888999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHH
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLL  132 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  132 (316)
                      .++.++       +++|++ .+...+..|..|.||++.|+..++.+++++|+
T Consensus        83 ~~~~~~-------~~~L~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          83 NGNLDV-------VKLLLK-HGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cCcHHH-------HHHHHH-cCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            999888       999999 77778888999999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.68  E-value=1.4e-17  Score=158.44  Aligned_cols=198  Identities=14%  Similarity=0.040  Sum_probs=131.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccc-cCCCCCcHHHHHHH
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGE-LDSRKSSALHIASQ   80 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-~d~~g~tpLh~A~~   80 (316)
                      ||+|-+||..|..++|+.||..+++-.+   ++-...|||-+|...|..++++.||..|+++... ..+.|.+||.+|..
T Consensus       825 dt~lSlacsggr~~vvelLl~~gankeh---rnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatm  901 (2131)
T KOG4369|consen  825 DTMLSLACSGGRTRVVELLLNAGANKEH---RNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATM  901 (2131)
T ss_pred             CceEEEecCCCcchHHHHHHHhhccccc---cchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhh
Confidence            4555555555555555555555554322   2444555666655555666666666666554211 13456666666666


Q ss_pred             cCCccc---------------------------ccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHh
Q 036662           81 KRYVGM---------------------------KSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLE  133 (316)
Q Consensus        81 ~g~~~~---------------------------~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  133 (316)
                      +||.+.                           ..|+.|++.+||. +.++++.+-+.|-|||+-++..|.+|+=++|+.
T Consensus       902 ngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa-~~anvehRaktgltplme~AsgGyvdvg~~li~  980 (2131)
T KOG4369|consen  902 NGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLA-AQANVEHRAKTGLTPLMEMASGGYVDVGNLLIA  980 (2131)
T ss_pred             ccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHH-HhhhhhhhcccCCcccchhhcCCccccchhhhh
Confidence            666554                           6666777777777 666666667777777777777777777777777


Q ss_pred             cCCCccccccc--cCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCc
Q 036662          134 NTDDSEFLNAK--DDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAIS  204 (316)
Q Consensus       134 ~g~~~~~~~~~--d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~  204 (316)
                      .|+|   +|..  -....|+|-.++..|+.+.++       .+..+|++|+|+|.+|+.    -++...+++|++++++.
T Consensus       981 ~gad---~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~----Gg~lss~~il~~~~ad~ 1053 (2131)
T KOG4369|consen  981 AGAD---TNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASA----GGALSSCPILVSSVADA 1053 (2131)
T ss_pred             cccc---cccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhcc----CCccccchHHhhcccCh
Confidence            7776   4432  234456777777777777666       577899999999999999    78899999999999998


Q ss_pred             ccccCC
Q 036662          205 AKEMQQ  210 (316)
Q Consensus       205 ~~~~~~  210 (316)
                      ......
T Consensus      1054 d~qdnr 1059 (2131)
T KOG4369|consen 1054 DQQDNR 1059 (2131)
T ss_pred             hhhhcc
Confidence            765543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.66  E-value=7.1e-16  Score=129.63  Aligned_cols=126  Identities=23%  Similarity=0.289  Sum_probs=88.2

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCC--CCcccccCC
Q 036662           34 NCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARP--LAASAPLIW  111 (316)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~--~~~~~~d~~  111 (316)
                      +..+.+++|.++..+..+++++++..|.++ +.+|..|.||||+|+..|+.  ..+..++++.|++...  +..+..|..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~--~~~~~~~~~~ll~~g~~~~~~~~~~~~  146 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNP--PEGNIEVAKLLLEAGADLDVNNLRDED  146 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCc--ccchHHHHHHHHHcCCCCCCccccCCC
Confidence            555777777777777777777777777777 77777777777777777772  1122222777777333  256666777


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec
Q 036662          112 VETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN  165 (316)
Q Consensus       112 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  165 (316)
                      |+||||+|+..|+.+++++|++.|++   ++.++..|.|++|+|+..++.++++
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~  197 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGAD---PNSRNSYGVTALDPAAKNGRIELVK  197 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCC---CcccccCCCcchhhhcccchHHHHH
Confidence            77777777777777777777777777   7777777777777777777666554

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.65  E-value=8.7e-16  Score=105.77  Aligned_cols=105  Identities=12%  Similarity=0.053  Sum_probs=93.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      |-.+.|++++|..+.|+.....+-++++.    ..|++|||+|+.+|+.+++++|+..|+++ +.+|+.|.|||..|+..
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~----~ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwE   77 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEI----YGGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWE   77 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHHHH----hCCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHH
Confidence            34567899999999999999999877554    48999999999999999999999999998 99999999999999999


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHH
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLC  119 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  119 (316)
                      ||.++       |++||+ .+++-..+..+|.+.+-.+
T Consensus        78 GH~~c-------VklLL~-~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   78 GHRDC-------VKLLLQ-NGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             hhHHH-------HHHHHH-cCcccceeCCCchhHHhhc
Confidence            99999       999999 8888888888887766543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.63  E-value=9.1e-16  Score=105.68  Aligned_cols=101  Identities=18%  Similarity=0.151  Sum_probs=90.2

Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHH
Q 036662           41 LHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCV  120 (316)
Q Consensus        41 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  120 (316)
                      ..|++.+|..+-|+..+..|-++ +.. ..|++|||+|+..|+.++       +++|+. .+++++.+|+.|-|||..|+
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nV-n~~-~ggR~plhyAAD~GQl~i-------lefli~-iGA~i~~kDKygITPLLsAv   75 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNV-NEI-YGGRTPLHYAADYGQLSI-------LEFLIS-IGANIQDKDKYGITPLLSAV   75 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccH-HHH-hCCcccchHhhhcchHHH-------HHHHHH-hccccCCccccCCcHHHHHH
Confidence            57899999999999999999887 433 389999999999999998       999999 99999999999999999999


Q ss_pred             hcCCHHHHHHHHhcCCCccccccccCCCCcHHHH
Q 036662          121 KHNQLEALKVLLENTDDSEFLNAKDDYGMSILHL  154 (316)
Q Consensus       121 ~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~  154 (316)
                      +.||.++|++|++.|++   -..+..+|.+.+..
T Consensus        76 wEGH~~cVklLL~~GAd---rt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   76 WEGHRDCVKLLLQNGAD---RTIHAPDGTALIEA  106 (117)
T ss_pred             HHhhHHHHHHHHHcCcc---cceeCCCchhHHhh
Confidence            99999999999999999   66677777666543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.63  E-value=1.6e-15  Score=127.40  Aligned_cols=126  Identities=23%  Similarity=0.177  Sum_probs=97.7

Q ss_pred             cccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCC-CcccccCCCCcHHHHHH---hcCCHHHHHHHHhcCCCccc
Q 036662           65 GELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPL-AASAPLIWVETILHLCV---KHNQLEALKVLLENTDDSEF  140 (316)
Q Consensus        65 ~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~-~~~~~d~~g~t~Lh~A~---~~g~~~~v~~Ll~~g~~~~~  140 (316)
                      ...+..+.+++|.++..+..++       +++++....+ .....+..----+....   ..++.++++.|++.|++...
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~  139 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKI-------VKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV  139 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHH-------HHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCC
Confidence            5677889999999999999998       8888885433 22222222111111111   45789999999999991112


Q ss_pred             cccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhC
Q 036662          141 LNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAG  201 (316)
Q Consensus       141 ~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~g  201 (316)
                      .+.+|..|+||||+|+..|+.++++       +++..|..|.|+++.|+.    .+..++++.+++.+
T Consensus       140 ~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~----~~~~~~~~~l~~~~  203 (235)
T COG0666         140 NNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAK----NGRIELVKLLLDKG  203 (235)
T ss_pred             ccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcc----cchHHHHHHHHhcC
Confidence            7778999999999999999998888       788889999999999999    89999999999987

>PF13962 PGG: Domain of unknown function

Probab=99.60  E-value=3e-15  Score=111.98  Aligned_cols=87  Identities=26%  Similarity=0.354  Sum_probs=65.8

Q ss_pred             cchhhhhcCCCCCccccCCc----cccccccccccchhhhHhHHHHHHHHHHHHHHHhccc--c-hhHHHHHHHHHHHHH
Q 036662          228 NNQKKEAGVDPPHSRWQDAS----SFELDATTQRYACFLFCNTTGFLASLSIILLLISGLP--L-NRRIFMWILMGTRDA  300 (316)
Q Consensus       228 ~~~~f~a~~t~Pgg~~~~~~----~~l~~~~~~~f~~f~~~~~~a~~~S~~~~~~~~~~~~--~-~~~~~~~~~~~~m~~  300 (316)
                      +|++|+|+++||||+||+++    +++. +++..|++|+++|+++|++|+++++++++++.  . .++..+++....|++
T Consensus        19 ATvtF~A~~tpPGG~~~~~~~~G~~il~-~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~   97 (113)
T PF13962_consen   19 ATVTFQAAFTPPGGYWQDDDDAGTPILA-KKPSAFKAFLISNTIAFFSSLAAIFLLISGLDDFRRFLRRYLLIASVLMWI   97 (113)
T ss_pred             HHHHHHHhcCCCCCccccccCCCCchhc-cccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            67799999999999998752    2666 33349999999999999999999988886551  1 222355666777777


Q ss_pred             HHHHHHHHHHhhccc
Q 036662          301 VFEFNRYKFENALCA  315 (316)
Q Consensus       301 ~f~~~~~~~~~~~~~  315 (316)
                      ++.++..+|.++++.
T Consensus        98 a~~~~~~Af~~g~~~  112 (113)
T PF13962_consen   98 ALISMMVAFAAGIYL  112 (113)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            777777777776653

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.56  E-value=3.4e-15  Score=96.93  Aligned_cols=56  Identities=34%  Similarity=0.431  Sum_probs=34.2

Q ss_pred             HHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 036662           97 LVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA  155 (316)
Q Consensus        97 Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A  155 (316)
                      ||++.+.+++..|..|+||||+|+.+|+.+++++|++.|++   ++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d---~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD---PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT-----TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC---CCCCcCCCCCHHHhC
Confidence            56655689999999999999999999999999999999999   999999999999997

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.56  E-value=1.5e-14  Score=139.98  Aligned_cols=105  Identities=16%  Similarity=0.011  Sum_probs=97.0

Q ss_pred             HHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHH
Q 036662           40 PLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLC  119 (316)
Q Consensus        40 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  119 (316)
                      .|+.|+..|+.++++.|++.|+++ +.+|..|.||||+|+.+|+.++       +++|++ .+++++.+|.+|+||||+|
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi-n~~d~~G~TpLh~Aa~~g~~ei-------v~~LL~-~Gadvn~~d~~G~TpLh~A  155 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP-NCRDYDGRTPLHIACANGHVQV-------VRVLLE-FGADPTLLDKDGKTPLELA  155 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHHCCCHHH-------HHHHHH-CCCCCCCCCCCCCCHHHHH
Confidence            588999999999999999999998 8899999999999999999998       999999 8999999999999999999


Q ss_pred             HhcCCHHHHHHHHhc-------CCCccccccccCCCCcHHHHHH
Q 036662          120 VKHNQLEALKVLLEN-------TDDSEFLNAKDDYGMSILHLAV  156 (316)
Q Consensus       120 ~~~g~~~~v~~Ll~~-------g~~~~~~~~~d~~g~t~Lh~A~  156 (316)
                      +.+|+.+++++|+++       |++   .+..+..|++|+-.+.
T Consensus       156 ~~~g~~~iv~~Ll~~~~~~~~~ga~---~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        156 EENGFREVVQLLSRHSQCHFELGAN---AKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHCCcHHHHHHHHhCCCcccccCCC---CCccccCCCCccchhh
Confidence            999999999999998       777   7788888888876554

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.54  E-value=8e-14  Score=115.63  Aligned_cols=122  Identities=13%  Similarity=0.059  Sum_probs=112.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      ++||..+.-.|+.+....||+.-.++   +.+|+.|.|+|.-|+..|+.++|++||+.|+|++..++..+.||||+|+..
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~v---n~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQV---NQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhh---hccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            47899999999999999999986655   556999999999999999999999999999999888999999999999999


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhc
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLEN  134 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  134 (316)
                      |+.++       .+.|++ .|+.....|.-|+|+-..|+.-|+.++|..+-++
T Consensus        90 Gn~dv-------crllld-aGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   90 GNQDV-------CRLLLD-AGARMYLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             CCchH-------HHHHHh-ccCccccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            99998       999999 8899999999999999999999999999887654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.53  E-value=3.2e-14  Score=137.74  Aligned_cols=106  Identities=17%  Similarity=0.129  Sum_probs=93.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCC
Q 036662            4 KLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRY   83 (316)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~   83 (316)
                      .|+.|+..|+.+.++.|++.|+++   +.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadi---n~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADP---NCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCc
Confidence            589999999999999999999987   445899999999999999999999999999998 8999999999999999999


Q ss_pred             cccccccHHHHHHHHHh------CCCCcccccCCCCcHHHHHH
Q 036662           84 VGMKSNRIDVLEELVRA------RPLAASAPLIWVETILHLCV  120 (316)
Q Consensus        84 ~~~~~~~~~iv~~Ll~~------~~~~~~~~d~~g~t~Lh~A~  120 (316)
                      .++       +++|+++      .+++.+..+..|.+|+..+.
T Consensus       161 ~~i-------v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        161 REV-------VQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHH-------HHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            998       9999993      16666666777777766554

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.52  E-value=2.6e-14  Score=92.26  Aligned_cols=49  Identities=27%  Similarity=0.376  Sum_probs=27.1

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCccc
Q 036662           37 SETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGM   86 (316)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~   86 (316)
                      |+||||+|+..|+.+++++|+++|.++ +.+|.+|+||||+|+..|+.++
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~   49 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDI   49 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHH
Confidence            456666666666666666666666665 5556666666666666666555

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.50  E-value=1.8e-14  Score=93.49  Aligned_cols=55  Identities=25%  Similarity=0.333  Sum_probs=32.4

Q ss_pred             HHHcC-hhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHH
Q 036662           20 FLQKD-RLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIA   78 (316)
Q Consensus        20 Ll~~~-~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A   78 (316)
                      ||+++ .++   +.+|..|+||||+||..|+.+++++|++.|+++ +.+|..|+||||+|
T Consensus         1 LL~~~~~~~---n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADV---NAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--T---T---TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH-
T ss_pred             CCccCcCCC---cCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHhC
Confidence            56677 444   556999999999999999999999999999999 99999999999997

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.49  E-value=5.7e-14  Score=125.06  Aligned_cols=118  Identities=22%  Similarity=0.203  Sum_probs=94.3

Q ss_pred             HHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCc
Q 036662            5 LYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYV   84 (316)
Q Consensus         5 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~   84 (316)
                      |..|+..|.+|+|+..+.+-.|.   ...+.+|-|+||-|+-.||.+||++|++.|+++ |..|.+||||||+|+.-++.
T Consensus       554 LLDaaLeGEldlVq~~i~ev~Dp---SqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDP---SQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCC---CCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCch
Confidence            56788889999999988876655   334788999999999999999999999999998 88899999999999988888


Q ss_pred             ccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHH--hcCCHHHHHHHHh
Q 036662           85 GMKSNRIDVLEELVRARPLAASAPLIWVETILHLCV--KHNQLEALKVLLE  133 (316)
Q Consensus        85 ~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~--~~g~~~~v~~Ll~  133 (316)
                      .+       ++.|++...+.+-..-.++.|+..-+-  +.|..+|.++|..
T Consensus       630 ~~-------ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  630 PM-------CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HH-------HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            88       999999444444444567888776654  4577888888874

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.45  E-value=2.2e-13  Score=87.88  Aligned_cols=54  Identities=28%  Similarity=0.218  Sum_probs=44.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEIL   57 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll   57 (316)
                      +.||||+|++.|+.+++++|++++.+++.   +|.+|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~---~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINA---QDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT----B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCC---CCCCCCCHHHHHHHccCHHHHHHHC
Confidence            47999999999999999999999988744   4899999999999999999999986

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=3.1e-12  Score=114.17  Aligned_cols=88  Identities=22%  Similarity=0.105  Sum_probs=79.1

Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHH
Q 036662           41 LHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCV  120 (316)
Q Consensus        41 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  120 (316)
                      |.-|+..|.+|+|+.++..-.|+ .+.|++|.|+||-|+-.||.+|       |++|++ .++++|..|.+||||||+|+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~Dp-SqpNdEGITaLHNAiCaghyeI-------VkFLi~-~ganVNa~DSdGWTPLHCAA  624 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDP-SQPNDEGITALHNAICAGHYEI-------VKFLIE-FGANVNAADSDGWTPLHCAA  624 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCC-CCCCccchhHHhhhhhcchhHH-------HHHHHh-cCCcccCccCCCCchhhhhh
Confidence            35588889999999999888887 8889999999999998888888       999999 99999999999999999999


Q ss_pred             hcCCHHHHHHHHhcCCC
Q 036662          121 KHNQLEALKVLLENTDD  137 (316)
Q Consensus       121 ~~g~~~~v~~Ll~~g~~  137 (316)
                      ..++..+++.|++.|+-
T Consensus       625 SCNnv~~ckqLVe~Gaa  641 (752)
T KOG0515|consen  625 SCNNVPMCKQLVESGAA  641 (752)
T ss_pred             hcCchHHHHHHHhccce
Confidence            99999999999999875

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.25  E-value=4.2e-11  Score=99.65  Aligned_cols=117  Identities=16%  Similarity=0.120  Sum_probs=105.1

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCccc-ccCCCCcH
Q 036662           37 SETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASA-PLIWVETI  115 (316)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~-~d~~g~t~  115 (316)
                      -..||..+...|+.+-...||..-.++ +.+|..|.|||..|+..|+.++       +++||+ .++++|. .+..+.||
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~v-n~~D~sGMs~LahAaykGnl~~-------v~lll~-~gaDvN~~qhg~~YTp   82 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQV-NQRDPSGMSVLAHAAYKGNLTL-------VELLLE-LGADVNDKQHGTLYTP   82 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhh-hccCCCcccHHHHHHhcCcHHH-------HHHHHH-hCCCcCcccccccccH
Confidence            467899999999999999999876666 8999999999999999999999       999999 7777765 45778999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec
Q 036662          116 LHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN  165 (316)
Q Consensus       116 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  165 (316)
                      ||.|+..|+.++.++|++.|+.   ....+.-|+|+-.+|+.-|+.++|.
T Consensus        83 LmFAALSGn~dvcrllldaGa~---~~~vNsvgrTAaqmAAFVG~H~CV~  129 (396)
T KOG1710|consen   83 LMFAALSGNQDVCRLLLDAGAR---MYLVNSVGRTAAQMAAFVGHHECVA  129 (396)
T ss_pred             HHHHHHcCCchHHHHHHhccCc---cccccchhhhHHHHHHHhcchHHHH
Confidence            9999999999999999999999   6666777999999999999999887

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.01  E-value=3e-10  Score=106.65  Aligned_cols=97  Identities=21%  Similarity=0.159  Sum_probs=87.1

Q ss_pred             HHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccC-CCCcHHHHHHhcCCHHHHHH
Q 036662           52 FAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLI-WVETILHLCVKHNQLEALKV  130 (316)
Q Consensus        52 ~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~~v~~  130 (316)
                      +--++-+.+.+.++.+|..|+|+||+++..|..++       +++||+ +|.++..+|. .|+||||-|+.+|+.+++.+
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~-------l~wLlq-hGidv~vqD~ESG~taLHRaiyyG~idca~l  104 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSF-------LRWLLQ-HGIDVFVQDEESGYTALHRAIYYGNIDCASL  104 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHH-------HHHHHh-cCceeeeccccccchHhhHhhhhchHHHHHH
Confidence            34455567778889999999999999999999888       999999 7999999886 59999999999999999999


Q ss_pred             HHhcCCCccccccccCCCCcHHHHHHhcC
Q 036662          131 LLENTDDSEFLNAKDDYGMSILHLAVADK  159 (316)
Q Consensus       131 Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~  159 (316)
                      |+++|+.   +..+|++|.+||...++-.
T Consensus       105 LL~~g~S---L~i~Dkeglsplq~~~r~~  130 (1267)
T KOG0783|consen  105 LLSKGRS---LRIKDKEGLSPLQFLSRVL  130 (1267)
T ss_pred             HHhcCCc---eEEecccCCCHHHHHhhcc
Confidence            9999998   9999999999999888743

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.99  E-value=1.1e-09  Score=98.96  Aligned_cols=119  Identities=19%  Similarity=0.125  Sum_probs=96.8

Q ss_pred             HHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCC-cccccCCCCCcHHHHHHHcCC
Q 036662            5 LYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPG-IAGELDSRKSSALHIASQKRY   83 (316)
Q Consensus         5 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~-~~~~~d~~g~tpLh~A~~~g~   83 (316)
                      +..|+..+++-.++....+|.++..+   +.+..|.||+|+..|+-++|++||++|+. +.+..|..|.|+||-|+-.++
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~---~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQ---GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEee---CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcc
Confidence            56778888888788887787776443   78888889999999999999999998875 446678888899998888888


Q ss_pred             cccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhc
Q 036662           84 VGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLEN  134 (316)
Q Consensus        84 ~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  134 (316)
                      ..+       .++|++ .++.....|..|.||-.-|-..|..++..+|-++
T Consensus       947 r~v-------c~~lvd-agasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  947 RAV-------CQLLVD-AGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hHH-------HHHHHh-cchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            777       888888 8888888888888988888888888888887653

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.91  E-value=7e-10  Score=104.19  Aligned_cols=82  Identities=16%  Similarity=0.060  Sum_probs=73.8

Q ss_pred             hhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCC-CCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCccccc
Q 036662           31 AAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDS-RKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPL  109 (316)
Q Consensus        31 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d  109 (316)
                      +.+|..|+|+||+|+..|..+++++||++|.++ +.+|. .|+||||.|..+|+.++       +-.||+ ++......|
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlqhGidv-~vqD~ESG~taLHRaiyyG~idc-------a~lLL~-~g~SL~i~D  116 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQHGIDV-FVQDEESGYTALHRAIYYGNIDC-------ASLLLS-KGRSLRIKD  116 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHhcCcee-eeccccccchHhhHhhhhchHHH-------HHHHHh-cCCceEEec
Confidence            446889999999999999999999999999998 66775 59999999999999998       999999 889999999


Q ss_pred             CCCCcHHHHHHh
Q 036662          110 IWVETILHLCVK  121 (316)
Q Consensus       110 ~~g~t~Lh~A~~  121 (316)
                      ++|..||..-++
T Consensus       117 keglsplq~~~r  128 (1267)
T KOG0783|consen  117 KEGLSPLQFLSR  128 (1267)
T ss_pred             ccCCCHHHHHhh
Confidence            999999998776

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.90  E-value=2.1e-09  Score=95.27  Aligned_cols=92  Identities=20%  Similarity=0.148  Sum_probs=86.9

Q ss_pred             CCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCc
Q 036662           35 CPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVET  114 (316)
Q Consensus        35 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t  114 (316)
                      .++..++.+|++.|++..++.+.-.|.|+ +.+|.+.+|+||+||..|+.++       +++|++.++.+++.+|..|+|
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~-~~~DyD~RTaLHvAAaEG~v~v-------~kfl~~~~kv~~~~kDRw~rt  575 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDL-ETKDYDDRTALHVAAAEGHVEV-------VKFLLNACKVDPDPKDRWGRT  575 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccc-cccccccchhheeecccCceeH-------HHHHHHHHcCCCChhhccCCC
Confidence            45667899999999999999999999998 9999999999999999999999       999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhc
Q 036662          115 ILHLCVKHNQLEALKVLLEN  134 (316)
Q Consensus       115 ~Lh~A~~~g~~~~v~~Ll~~  134 (316)
                      ||.-|...+|.+++++|-+.
T Consensus       576 PlDdA~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  576 PLDDAKHFKHKEVVKLLEEA  595 (622)
T ss_pred             cchHhHhcCcHHHHHHHHHH
Confidence            99999999999999999875

>PF13606 Ank_3: Ankyrin repeat

Probab=98.88  E-value=2.5e-09  Score=59.44  Aligned_cols=28  Identities=29%  Similarity=0.420  Sum_probs=25.9

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhhCCCc
Q 036662           36 PSETPLHVAALLRHKDFAKEILRQKPGI   63 (316)
Q Consensus        36 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~   63 (316)
                      +|+||||+||..|+.+++++|+++|+|+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadv   28 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADV   28 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            5899999999999999999999999987

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.85  E-value=7.9e-09  Score=92.07  Aligned_cols=80  Identities=21%  Similarity=0.120  Sum_probs=73.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCC
Q 036662            4 KLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRY   83 (316)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~   83 (316)
                      -||-.++.|+.+..-.||..|++.+..  --..|.||||.|++.|+.--+++|+-.|+|+ ...|.+|.||+.+|-..||
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~--hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~GmtP~~~AR~~gH  212 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFF--HPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSSGMTPVDYARQGGH  212 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCC--CcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCCCCCcHHHHHHhcCc
Confidence            589999999999999999999987543  1346999999999999999999999999999 9999999999999999999


Q ss_pred             ccc
Q 036662           84 VGM   86 (316)
Q Consensus        84 ~~~   86 (316)
                      .++
T Consensus       213 ~~l  215 (669)
T KOG0818|consen  213 HEL  215 (669)
T ss_pred             hHH
Confidence            998

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.84  E-value=4.9e-09  Score=59.91  Aligned_cols=32  Identities=38%  Similarity=0.502  Sum_probs=28.9

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhhCCCcccccC
Q 036662           36 PSETPLHVAALLRHKDFAKEILRQKPGIAGELD   68 (316)
Q Consensus        36 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d   68 (316)
                      +|+||||+|+..|+.+++++|+++|+++ +.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADI-NARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCT-TCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCC-CCCC
Confidence            5899999999999999999999999998 6665

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.83  E-value=4.8e-09  Score=58.26  Aligned_cols=29  Identities=38%  Similarity=0.485  Sum_probs=27.4

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhcCCCccccc
Q 036662          111 WVETILHLCVKHNQLEALKVLLENTDDSEFLN  142 (316)
Q Consensus       111 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~  142 (316)
                      +|+||||+|+++|+.|++++|+++|+|   +|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gad---vn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGAD---VN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCC---CC
Confidence            589999999999999999999999998   65

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.83  E-value=1.4e-08  Score=90.50  Aligned_cols=86  Identities=15%  Similarity=0.030  Sum_probs=78.5

Q ss_pred             HHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHH
Q 036662           40 PLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLC  119 (316)
Q Consensus        40 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A  119 (316)
                      -||..++.|+.++.-.||..|++.+...-..|.||||+|++.|+..-       +++|+- +|+++...|.+|.||+.+|
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q-------~ElL~v-YGAD~~a~d~~GmtP~~~A  207 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQ-------AELLAV-YGADPGAQDSSGMTPVDYA  207 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhh-------hhHHhh-ccCCCCCCCCCCCcHHHHH
Confidence            38999999999999999999999955556789999999999999988       898888 9999999999999999999


Q ss_pred             HhcCCHHHHHHHHh
Q 036662          120 VKHNQLEALKVLLE  133 (316)
Q Consensus       120 ~~~g~~~~v~~Ll~  133 (316)
                      -..||-++.+-|++
T Consensus       208 R~~gH~~laeRl~e  221 (669)
T KOG0818|consen  208 RQGGHHELAERLVE  221 (669)
T ss_pred             HhcCchHHHHHHHH
Confidence            99999888777765

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.82  E-value=6.5e-09  Score=93.55  Aligned_cols=81  Identities=25%  Similarity=0.203  Sum_probs=69.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCC
Q 036662            4 KLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRY   83 (316)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~   83 (316)
                      |||+++...+.+.....+..... ...+.+|..|+||||+|+..|+.+.++.|+..|+++ ..+|++|++|||-|+..|+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~-~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVS-LVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhh-ceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC
Confidence            59999999999888776655421 122446889999999999999999999999999998 8999999999999999999


Q ss_pred             ccc
Q 036662           84 VGM   86 (316)
Q Consensus        84 ~~~   86 (316)
                      .++
T Consensus       101 ~q~  103 (560)
T KOG0522|consen  101 EQI  103 (560)
T ss_pred             HHH
Confidence            887

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.80  E-value=8.2e-09  Score=58.96  Aligned_cols=33  Identities=30%  Similarity=0.459  Sum_probs=30.6

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccC
Q 036662          111 WVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDD  146 (316)
Q Consensus       111 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~  146 (316)
                      +|+||||+|+.+|+.+++++|+++|++   ++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~---~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGAD---INARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSC---TTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCC---CCCCCC
Confidence            589999999999999999999999999   887764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.72  E-value=1.1e-08  Score=90.87  Aligned_cols=89  Identities=24%  Similarity=0.152  Sum_probs=81.3

Q ss_pred             cCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec--------ccccccCCCCCHHHH
Q 036662          109 LIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN--------QSECCYANGFTAWDI  180 (316)
Q Consensus       109 d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~--------~~~~~~~~g~TpL~~  180 (316)
                      +.++...+.+|++.|....++-+.-.|.|   ++.+|.+.+|+||.|+..|+.++++        +++.+|..|+|||+-
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D---~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMD---LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhccc---ccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH
Confidence            34567889999999999999999999999   9999999999999999999999998        899999999999999


Q ss_pred             HHhccCCCcHHHHHHHHHHhCCCc
Q 036662          181 LANSKRKMKDWEIGELLRRAGAIS  204 (316)
Q Consensus       181 a~~~~~~~~~~~i~~~Ll~~ga~~  204 (316)
                      |..    .++.+++++|.++-..-
T Consensus       580 A~~----F~h~~v~k~L~~~~~~y  599 (622)
T KOG0506|consen  580 AKH----FKHKEVVKLLEEAQYPY  599 (622)
T ss_pred             hHh----cCcHHHHHHHHHHhccc
Confidence            999    89999999998765533

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.66  E-value=6.3e-08  Score=87.80  Aligned_cols=112  Identities=15%  Similarity=0.062  Sum_probs=83.8

Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCC-CcccccCCCCcHHHHH
Q 036662           41 LHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPL-AASAPLIWVETILHLC  119 (316)
Q Consensus        41 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~-~~~~~d~~g~t~Lh~A  119 (316)
                      +..|+..+++--++.+-..|.++ -.++.+-.|-||+|+..|+.++       |+++|++.|. ..+..|..|+|+||-|
T Consensus       870 il~av~~~D~~klqE~h~~gg~l-l~~~~~~~sllh~a~~tg~~ei-------vkyildh~p~elld~~de~get~lhka  941 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSL-LIQGPDHCSLLHYAAKTGNGEI-------VKYILDHGPSELLDMADETGETALHKA  941 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCce-EeeCcchhhHHHHHHhcCChHH-------HHHHHhcCCHHHHHHHhhhhhHHHHHH
Confidence            44566666665566666677776 6677788888888888888888       8888886554 4567778888888888


Q ss_pred             HhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcce
Q 036662          120 VKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEY  163 (316)
Q Consensus       120 ~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~  163 (316)
                      +..++..+.++|++.|+.   +-..|..|.||-..|-..|+++.
T Consensus       942 a~~~~r~vc~~lvdagas---l~ktd~kg~tp~eraqqa~d~dl  982 (1004)
T KOG0782|consen  942 ACQRNRAVCQLLVDAGAS---LRKTDSKGKTPQERAQQAGDPDL  982 (1004)
T ss_pred             HHhcchHHHHHHHhcchh---heecccCCCChHHHHHhcCCchH
Confidence            888888888888888887   77777777777777766665543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.65  E-value=7.1e-08  Score=87.61  Aligned_cols=92  Identities=17%  Similarity=0.118  Sum_probs=79.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHcChhhHHhh-hcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 036662            4 KLYEAALAGSVTSLLEFLQKDRLILERA-AMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKR   82 (316)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g   82 (316)
                      -|.-|+...|+..+-.||.+|......+ ..+.+|+|+||+||..|++.+.++|+-+|.|+ ..+|.+|+|+|.+|-+.|
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~  705 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAG  705 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhcc
Confidence            4677899999999999999986543222 23567899999999999999999999999998 899999999999999999


Q ss_pred             CcccccccHHHHHHHHHhCCCC
Q 036662           83 YVGMKSNRIDVLEELVRARPLA  104 (316)
Q Consensus        83 ~~~~~~~~~~iv~~Ll~~~~~~  104 (316)
                      ..++       +..|++ +|..
T Consensus       706 sqec-------~d~llq-~gcp  719 (749)
T KOG0705|consen  706 SQEC-------IDVLLQ-YGCP  719 (749)
T ss_pred             cHHH-------HHHHHH-cCCC
Confidence            9998       999999 5543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.62  E-value=8e-08  Score=86.66  Aligned_cols=88  Identities=19%  Similarity=0.129  Sum_probs=73.7

Q ss_pred             CHHHHHHhcCCHHHHHHHHh-hCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHH
Q 036662           39 TPLHVAALLRHKDFAKEILR-QKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILH  117 (316)
Q Consensus        39 t~Lh~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh  117 (316)
                      -|||+++.....+-...++. .-+..++.+|..|.||||+|+..|+.+.       ++.|+. .++++..+|++||+|||
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~-------a~~Ll~-a~Adv~~kN~~gWs~L~   93 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEA-------ARILLS-AGADVSIKNNEGWSPLH   93 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHH-------HHHHHh-cCCCccccccccccHHH
Confidence            45999999887766555333 3333448899999999999999999998       999999 88889999999999999


Q ss_pred             HHHhcCCHHHHHHHHhc
Q 036662          118 LCVKHNQLEALKVLLEN  134 (316)
Q Consensus       118 ~A~~~g~~~~v~~Ll~~  134 (316)
                      -|+..|+.+++..++.+
T Consensus        94 EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   94 EAVSTGNEQIITEVLRH  110 (560)
T ss_pred             HHHHcCCHHHHHHHHHH
Confidence            99999999888777754

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.56  E-value=1e-07  Score=92.51  Aligned_cols=124  Identities=18%  Similarity=0.046  Sum_probs=100.7

Q ss_pred             cCCCCCCHHHHHHhcCCHHHHHHHHhh-CCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCC
Q 036662           33 MNCPSETPLHVAALLRHKDFAKEILRQ-KPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIW  111 (316)
Q Consensus        33 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~  111 (316)
                      ....|.|.||+++..++...++.+++. |... ...|.+|.-.+|++ ..++.+.       .-+++...+..++.+|..
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~-~eld~d~qgV~hfc-a~lg~ew-------A~ll~~~~~~ai~i~D~~  640 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGD-LELDRDGQGVIHFC-AALGYEW-------AFLPISADGVAIDIRDRN  640 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCc-hhhcccCCChhhHh-hhcCCce-------eEEEEeecccccccccCC
Confidence            355799999999999999999999997 6555 66788888888884 4555565       667777789999999999


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCCccc---cccccCCCCcHHHHHHhcCCcceec
Q 036662          112 VETILHLCVKHNQLEALKVLLENTDDSEF---LNAKDDYGMSILHLAVADKQIEYYN  165 (316)
Q Consensus       112 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~---~~~~d~~g~t~Lh~A~~~~~~~~v~  165 (316)
                      ||||||||+..|+..++..|++.|+++..   ++..+..|.|+-.+|..+|+..+..
T Consensus       641 G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~  697 (975)
T KOG0520|consen  641 GWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAG  697 (975)
T ss_pred             CCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHH
Confidence            99999999999999999999999887542   3334557888888888888776644

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.50  E-value=3.2e-07  Score=83.52  Aligned_cols=89  Identities=20%  Similarity=0.105  Sum_probs=77.3

Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCc---ccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHH
Q 036662           41 LHVAALLRHKDFAKEILRQKPGI---AGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILH  117 (316)
Q Consensus        41 Lh~A~~~g~~~~v~~Ll~~~~~~---~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh  117 (316)
                      |--|+...++..+-+||.+|...   ....+.+|+|+||+||+.|+..+       .++|+= ++.++..+|.+|+|+|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl-------~QLLiW-yg~dv~~rda~g~t~l~  699 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVL-------AQLLIW-YGVDVMARDAHGRTALF  699 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhH-------HHHHHH-hCccceecccCCchhhh
Confidence            56677777888999999998642   13356788999999999999987       788775 99999999999999999


Q ss_pred             HHHhcCCHHHHHHHHhcCCC
Q 036662          118 LCVKHNQLEALKVLLENTDD  137 (316)
Q Consensus       118 ~A~~~g~~~~v~~Ll~~g~~  137 (316)
                      +|-..|..+++..|+++|..
T Consensus       700 yar~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  700 YARQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             hHhhcccHHHHHHHHHcCCC
Confidence            99999999999999999986

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.44  E-value=2.7e-07  Score=80.00  Aligned_cols=75  Identities=20%  Similarity=0.198  Sum_probs=61.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCC
Q 036662            4 KLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRY   83 (316)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~   83 (316)
                      -|++||+.|+++.|+.|++.|.++   +.+|....+||.+|+.+||.++|++||++|+-. ..--.+|.-++ +++.+.+
T Consensus        39 elceacR~GD~d~v~~LVetgvnV---N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC~-YgaLnd~  113 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNV---NAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRCH-YGALNDR  113 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCc---chhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchhh-hhhhhHH
Confidence            378999999999999999999888   555999999999999999999999999999975 44445665554 4444443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.42  E-value=8.5e-07  Score=84.54  Aligned_cols=118  Identities=20%  Similarity=0.144  Sum_probs=96.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHcChh-hHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 036662            4 KLYEAALAGSVTSLLEFLQKDRL-ILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKR   82 (316)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g   82 (316)
                      ....|+.+||.-.|+..++.... ....+.+|.-|+++||.|..+-+.+++++|+++....        .-+|..|+..|
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~~   99 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAVG   99 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHHH
Confidence            35679999999999999987543 1123456889999999999999999999999986654        34799999999


Q ss_pred             CcccccccHHHHHHHHHhCCCCcc----------cccCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 036662           83 YVGMKSNRIDVLEELVRARPLAAS----------APLIWVETILHLCVKHNQLEALKVLLENTDD  137 (316)
Q Consensus        83 ~~~~~~~~~~iv~~Ll~~~~~~~~----------~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~  137 (316)
                      ..+.       |+.++. ++....          ..-..+.|||.+||-.++.|+++.|+.+|+.
T Consensus       100 ~v~~-------VE~ll~-~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen  100 SVPL-------VELLLV-HFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             HHHH-------HHHHHh-cccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence            9888       999999 443321          1124578999999999999999999999976

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.33  E-value=6e-07  Score=87.51  Aligned_cols=85  Identities=18%  Similarity=0.131  Sum_probs=52.7

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcH
Q 036662           36 PSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETI  115 (316)
Q Consensus        36 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~  115 (316)
                      .|.|+||.|+..|...++++||+.|+++ +..|..|.||||.+...|+...       +..+++ ++++.+..|.+|.+|
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~v-n~~d~~g~~plh~~~~~g~~~~-------~~~ll~-~~a~~~a~~~~~~~~  725 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADV-NALDSKGRTPLHHATASGHTSI-------ACLLLK-RGADPNAFDPDGKLP  725 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcc-hhhhccCCCcchhhhhhcccch-------hhhhcc-ccccccccCccCcch
Confidence            3566666666666666666666666664 6666666666666666666665       666666 666666666666666


Q ss_pred             HHHHHhcCCHHHHH
Q 036662          116 LHLCVKHNQLEALK  129 (316)
Q Consensus       116 Lh~A~~~g~~~~v~  129 (316)
                      |++|....+.+++-
T Consensus       726 l~~a~~~~~~d~~~  739 (785)
T KOG0521|consen  726 LDIAMEAANADIVL  739 (785)
T ss_pred             hhHHhhhccccHHH
Confidence            66665554444433

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.28  E-value=3e-06  Score=80.89  Aligned_cols=133  Identities=17%  Similarity=0.115  Sum_probs=102.1

Q ss_pred             CCHHHHHHhcCCHHHHHHHHhhCCC---cccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCc
Q 036662           38 ETPLHVAALLRHKDFAKEILRQKPG---IAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVET  114 (316)
Q Consensus        38 ~t~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t  114 (316)
                      .--.-.|+..|+...|+..++....   ..|..|.-|+++|++|..+.+.++       +++|++ .+...       ..
T Consensus        26 e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~-------~eLLl~-~~~~~-------gd   90 (822)
T KOG3609|consen   26 EKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLEL-------QELLLD-TSSEE-------GD   90 (822)
T ss_pred             hHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHH-------HHHHhc-Ccccc-------ch
Confidence            3346789999999999999987654   237889999999999999999988       999999 55333       56


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceecccccccCCCCCHHHHHHhccCCCcHHHHH
Q 036662          115 ILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANGFTAWDILANSKRKMKDWEIG  194 (316)
Q Consensus       115 ~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~~~~~~~~g~TpL~~a~~~~~~~~~~~i~  194 (316)
                      +|-+|+..|..++|+.++.+...   ..   ..+.     +..        .....-..+.||+.+|+.    .++.||+
T Consensus        91 ALL~aI~~~~v~~VE~ll~~~~~---~~---~~~~-----~~d--------~~~~~ft~ditPliLAAh----~NnyEil  147 (822)
T KOG3609|consen   91 ALLLAIAVGSVPLVELLLVHFVD---AP---YLER-----SGD--------ANSPHFTPDITPLMLAAH----LNNFEIL  147 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccc---cc---hhcc-----ccc--------cCcccCCCCccHHHHHHH----hcchHHH
Confidence            89999999999999999987543   11   1111     111        112334567899999999    8999999


Q ss_pred             HHHHHhCCCccccc
Q 036662          195 ELLRRAGAISAKEM  208 (316)
Q Consensus       195 ~~Ll~~ga~~~~~~  208 (316)
                      +.|+++|+....+-
T Consensus       148 ~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen  148 QCLLTRGHCIPIPH  161 (822)
T ss_pred             HHHHHcCCCCCCCc
Confidence            99999999886543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.19  E-value=1e-06  Score=85.96  Aligned_cols=70  Identities=27%  Similarity=0.311  Sum_probs=47.7

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHh
Q 036662          111 WVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILAN  183 (316)
Q Consensus       111 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~  183 (316)
                      .|.|+||.|+..+...++++|+++|++   +|..|..|+||||.+...|+...+.       +.++.+.+|.+|+++|..
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~---vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~  731 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGAD---VNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAME  731 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCc---chhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhh
Confidence            456677777777777777777777666   6677777777777776666666555       666666777777777665

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.13  E-value=1e-06  Score=85.68  Aligned_cols=121  Identities=15%  Similarity=0.101  Sum_probs=93.3

Q ss_pred             cccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHh-cCCCcccccc
Q 036662           65 GELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLE-NTDDSEFLNA  143 (316)
Q Consensus        65 ~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~~  143 (316)
                      ......|.|-+|+++..++...       ++.+++..+......|.+|+..+|. |..++.+...+++. .|..   ++.
T Consensus       568 ~~~~~r~~lllhL~a~~lyawL-------ie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~a---i~i  636 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWL-------IEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVA---IDI  636 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHH-------HHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccc---ccc
Confidence            4556778999999999999888       9999885355566678889999999 44555665555554 4444   899


Q ss_pred             ccCCCCcHHHHHHhcCCcceec-------------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHh
Q 036662          144 KDDYGMSILHLAVADKQIEYYN-------------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRA  200 (316)
Q Consensus       144 ~d~~g~t~Lh~A~~~~~~~~v~-------------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~  200 (316)
                      +|..|+||||||+..|+..++.             ++...+-.|.|+-++|..    .++..+..+|.++
T Consensus       637 ~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s----~g~~gia~~lse~  702 (975)
T KOG0520|consen  637 RDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARA----NGHKGIAGYLSEK  702 (975)
T ss_pred             ccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhc----ccccchHHHHhhh
Confidence            9999999999999999888776             566666779999999887    6666666666544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.99  E-value=1.6e-05  Score=62.92  Aligned_cols=68  Identities=16%  Similarity=0.025  Sum_probs=61.4

Q ss_pred             CcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 036662           62 GIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDD  137 (316)
Q Consensus        62 ~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~  137 (316)
                      ++ |.+|..|||||+.|+..|..+.       +.+|+.+..+.+...|..|.+++.+|-+.|..++++.|-++..+
T Consensus         4 ~i-n~rD~fgWTalmcaa~eg~~ea-------vsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    4 NI-NARDAFGWTALMCAAMEGSNEA-------VSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             Cc-cchhhhcchHHHHHhhhcchhH-------HHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            44 8899999999999999999998       99999944488999999999999999999999999999987554

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.97  E-value=1.7e-05  Score=69.09  Aligned_cols=74  Identities=16%  Similarity=0.065  Sum_probs=62.3

Q ss_pred             CHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHH
Q 036662           39 TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHL  118 (316)
Q Consensus        39 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~  118 (316)
                      --|..||+.|+++.|+.|++.|.++ |..|....+||.+|+.-||..+       +++||+ +|+..+.-..+|.-+ |+
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~v-------vklLLe-nGAiC~rdtf~G~RC-~Y  107 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDV-------VKLLLE-NGAICSRDTFDGDRC-HY  107 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHH-------HHHHHH-cCCcccccccCcchh-hh
Confidence            3489999999999999999999998 9999999999999999999998       999999 887766645556544 44


Q ss_pred             HHhc
Q 036662          119 CVKH  122 (316)
Q Consensus       119 A~~~  122 (316)
                      ++.+
T Consensus       108 gaLn  111 (516)
T KOG0511|consen  108 GALN  111 (516)
T ss_pred             hhhh
Confidence            4444

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.92  E-value=9.5e-06  Score=64.16  Aligned_cols=61  Identities=16%  Similarity=0.074  Sum_probs=56.9

Q ss_pred             CCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcC-CCccccccccCCCCcHHHHHHhcCCcceec
Q 036662          102 PLAASAPLIWVETILHLCVKHNQLEALKVLLENT-DDSEFLNAKDDYGMSILHLAVADKQIEYYN  165 (316)
Q Consensus       102 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  165 (316)
                      ..++|.+|..|||+|+.|+..|+.+.+.+|+++| +.   +...|..|++++.+|-+.|..+.+.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~---vgv~d~ssldaaqlaek~g~~~fvh   63 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF---VGVTDESSLDAAQLAEKGGAQAFVH   63 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccc---ccccccccchHHHHHHhcChHHHHH
Confidence            3578999999999999999999999999999999 66   8899999999999999999998887

>smart00248 ANK ankyrin repeats

Probab=97.26  E-value=0.0005  Score=36.56  Aligned_cols=28  Identities=32%  Similarity=0.402  Sum_probs=24.1

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhhCCCc
Q 036662           36 PSETPLHVAALLRHKDFAKEILRQKPGI   63 (316)
Q Consensus        36 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~   63 (316)
                      .|.||+|+|+..|+.++++.|++.+.++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3788999999999999999999988765

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.00  E-value=0.0013  Score=34.80  Aligned_cols=27  Identities=37%  Similarity=0.485  Sum_probs=24.8

Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 036662          111 WVETILHLCVKHNQLEALKVLLENTDD  137 (316)
Q Consensus       111 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~  137 (316)
                      +|.||+|+|+..++.++++.|++.+.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            478999999999999999999998876

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.85  E-value=0.001  Score=60.32  Aligned_cols=65  Identities=15%  Similarity=0.016  Sum_probs=51.3

Q ss_pred             HHHHHHHHHcChhhHH---hhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHH
Q 036662           14 VTSLLEFLQKDRLILE---RAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIAS   79 (316)
Q Consensus        14 ~~~v~~Ll~~~~~~~~---~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~   79 (316)
                      .+.+++|.+++.+.+.   +...+..-.|+||+|+.+|.-++|.+||+.|+|+ ..+|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCcccccc
Confidence            4566677666554321   1223445679999999999999999999999999 889999999999887

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.17  E-value=0.0075  Score=54.90  Aligned_cols=62  Identities=24%  Similarity=0.268  Sum_probs=48.3

Q ss_pred             HHHHHHHHHhCCCCccc------ccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 036662           91 IDVLEELVRARPLAASA------PLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV  156 (316)
Q Consensus        91 ~~iv~~Ll~~~~~~~~~------~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~  156 (316)
                      +..+++|.+ +....|.      .+..--|+||+|+..|..++|.++++.|+|   +..+|..|.||..++.
T Consensus       404 p~~ie~lke-n~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D---p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKE-NLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD---PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHh-cCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC---chhcccCCCCcccccc
Confidence            444666666 4433322      234457999999999999999999999999   8899999999988776

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.22  E-value=0.52  Score=39.00  Aligned_cols=116  Identities=14%  Similarity=0.128  Sum_probs=78.1

Q ss_pred             HHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCC----CcccccCCCCCcHHHHHHH
Q 036662            5 LYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKP----GIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         5 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~----~~~~~~d~~g~tpLh~A~~   80 (316)
                      |-.|+..-|.+.+..++....+          -.++|-+|...+..+++-+|+.+-.    |+..  -..+.--+.++..
T Consensus       157 ledAV~AsN~~~i~~~VtdKkd----------A~~Am~~si~~~K~dva~~lls~f~ft~~dv~~--~~~~~ydieY~LS  224 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDKKD----------AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVAS--MEKELYDIEYLLS  224 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcchHH----------HHHHHHHHhcccHHHHHHHHHhhcceecchhhh--cCcchhhHHHHHh
Confidence            5566777777666665544332          2467888888899999999998642    2211  1223334555554


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCccc---ccCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASA---PLIWVETILHLCVKHNQLEALKVLLENTDD  137 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~---~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~  137 (316)
                      .....     ..+++++++..-.++|.   +-+.|.|-|.-|+++++.+++.+|+++|+-
T Consensus       225 ~h~a~-----~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  225 EHSAS-----YKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             hcCCc-----HHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            44332     24588888855455554   356799999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.07  E-value=0.33  Score=38.80  Aligned_cols=135  Identities=14%  Similarity=0.085  Sum_probs=69.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCC
Q 036662            4 KLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRY   83 (316)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~   83 (316)
                      .|.-|++.+.+.+++..-+...+-      -...++..-.||+..+.|+|+++=+   ++ ..  .+-.+-+-+|.....
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~------~~~~q~LFElAC~~qkydiV~WI~q---nL-~i--~~~~~iFdIA~~~kD  116 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE------RYLNQELFELACEEQKYDIVKWIGQ---NL-HI--YNPEDIFDIAFAKKD  116 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc------hhHHHHHHHHHHHHccccHHHHHhh---cc-CC--CCchhhhhhhhhccc
Confidence            467788888888888775543311      1345677888999999999999833   22 11  112234555555555


Q ss_pred             cccccccHHHHHHHHHhCCCCcccccC--CCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCc
Q 036662           84 VGMKSNRIDVLEELVRARPLAASAPLI--WVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQI  161 (316)
Q Consensus        84 ~~~~~~~~~iv~~Ll~~~~~~~~~~d~--~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  161 (316)
                      .++    ..+--.++-.+.......|.  --..-|.+|+..|-..-+...+++|-+   ++.      ++|-.|+..++-
T Consensus       117 lsL----yslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~---~~~------~vls~Av~ynhR  183 (192)
T PF03158_consen  117 LSL----YSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGN---VDI------IVLSQAVKYNHR  183 (192)
T ss_pred             hhH----HHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCc---ccH------HHHHHHHHhhHH
Confidence            544    11111111111111100000  001235556666666666666666655   332      555556655554


Q ss_pred             ce
Q 036662          162 EY  163 (316)
Q Consensus       162 ~~  163 (316)
                      ++
T Consensus       184 kI  185 (192)
T PF03158_consen  184 KI  185 (192)
T ss_pred             HH
Confidence            43

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.18  E-value=0.61  Score=31.78  Aligned_cols=48  Identities=17%  Similarity=0.189  Sum_probs=39.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhC
Q 036662            3 SKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQK   60 (316)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~   60 (316)
                      ..|..|+..|+.|+++.+++.+. +      +   ...+..|+..-+.+++++|++..
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~-~------~---~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNK-P------D---NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc-c------H---HHHHHHHHHHhhHHHHHHHHHhc
Confidence            46789999999999999997652 1      1   34589999999999999999973

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=87.68  E-value=1.7  Score=29.60  Aligned_cols=47  Identities=13%  Similarity=0.120  Sum_probs=32.0

Q ss_pred             CHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHh
Q 036662           39 TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRA  100 (316)
Q Consensus        39 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~  100 (316)
                      ..+..|+..|+.|+++.+++.+ .+ +      ...+..|+...+-++       +++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~-~------~~~l~~AI~~H~n~i-------~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KP-D------NDCLEYAIKSHNNEI-------ADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-cc-H------HHHHHHHHHHhhHHH-------HHHHHHh
Confidence            3467778888888888777654 22 1      346777777777777       7777774

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=86.98  E-value=1.3  Score=36.67  Aligned_cols=50  Identities=14%  Similarity=0.089  Sum_probs=33.5

Q ss_pred             CHHHHHHHHHcCh-hhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCC
Q 036662           13 SVTSLLEFLQKDR-LILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPG   62 (316)
Q Consensus        13 ~~~~v~~Ll~~~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~   62 (316)
                      +..++++.+++|- +++.+-.+-..|.|-|.-|...++.+++..||++|+-
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            4455666666552 2222223445788888888888888888888888874

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]

Probab=86.19  E-value=0.22  Score=46.83  Aligned_cols=140  Identities=13%  Similarity=0.036  Sum_probs=82.0

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcH-HHHHHHcCCccc---ccccHHH-HHHHHHhCCCCc---
Q 036662           34 NCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSA-LHIASQKRYVGM---KSNRIDV-LEELVRARPLAA---  105 (316)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp-Lh~A~~~g~~~~---~~~~~~i-v~~Ll~~~~~~~---  105 (316)
                      ...+.++.+++...|....++....-+..     +....++ ++.|-.....+.   ..+.-++ ..+.++..+..+   
T Consensus        52 ~s~~~~~~~l~~~~g~~~~~~~a~~fDv~-----~~g~~~~gl~~aml~a~~~~~~P~~~a~~~~~~~~~~~~~~ll~~~  126 (503)
T KOG0513|consen   52 VSLAYLELRLQNIDGDPSAARLADYFDVS-----IAGTNTGGLITAMLFAPNDCGRPRFGATDILWKFNLEKAPKLLEKF  126 (503)
T ss_pred             hhhcccHHHHHhccCChHhhHhhhccCce-----eeccCCchhhhhhhhccccccCccccccchhhhhhhcCCCcccccc
Confidence            34567777777777777655554332221     2222222 222222222221   2222233 333333222222   


Q ss_pred             ---ccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceecccccccCCCCCHHHHHH
Q 036662          106 ---SAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANGFTAWDILA  182 (316)
Q Consensus       106 ---~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~~~~~~~~g~TpL~~a~  182 (316)
                         +.......++++..+.....+++..++..+..   ...++.+|+|+||.+...++.  ...+...+-++.+|+++..
T Consensus       127 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~---~~~~~~~g~t~L~~tl~~~~~--~~~i~~ldl~~~~P~lf~~  201 (503)
T KOG0513|consen  127 DDPNFIKGDLNLALRILVSGDKYSGAEVLLTKYEI---ADAREVLGNTKLHLTLTKENL--LVVIPCLDLKSLTPNLFSI  201 (503)
T ss_pred             ccccccccccccceeeeecCccccceeeccccccc---chhhhhcCCceeeeeccCCCc--ceEEEeeccCcCCceeeee
Confidence               22235677899999988888988888876655   667788999999999998776  3344455556688888765


Q ss_pred             h
Q 036662          183 N  183 (316)
Q Consensus       183 ~  183 (316)
                      .
T Consensus       202 ~  202 (503)
T KOG0513|consen  202 Y  202 (503)
T ss_pred             e
Confidence            5

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	316
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		1e-04
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		6e-04
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		7e-04
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		8e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 15/173 (8%)
Query: 2   ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKP 61
            + L+ AA  G V ++L  L+K+     +A M     TPLHVAA       A+ +L    
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEA---SQACMTKKGFTPLHVAAKYGKVRVAELLL---- 166
Query: 62  GIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVK 121
               E D+  ++A        +V +  N +D+++ L+  R  +  +P     T LH+  K
Sbjct: 167 ----ERDAHPNAAGKNGLTPLHVAVHHNNLDIVK-LLLPRGGSPHSPAWNGYTPLHIAAK 221
Query: 122 HNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANG 174
            NQ+E  + LL+    +   NA+   G++ LHLA  +   E         ANG
Sbjct: 222 QNQVEVARSLLQYGGSA---NAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 12/126 (9%)
Query: 37  SETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEE 96
             TPLH+AA   H +  K +L     +  + D    + LH+A+       ++  ++V++ 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAA-------RNGHLEVVKL 53
Query: 97  LVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
           L+ A     +A      T LHL  ++  LE +K+LLE   D   +NAKD  G + LHLA 
Sbjct: 54  LLEAGA-DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAA 109
Query: 157 ADKQIE 162
            +  +E
Sbjct: 110 RNGHLE 115

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 27/159 (16%)
Query: 4   KLYEAALAGSVTSLLEFLQKD--RLILERAA----MNCPSETPLHVAALLRHKDFAKEIL 57
           KL EAA AG         Q D  R+++   A     +    TPLH+AA   H +  + +L
Sbjct: 17  KLLEAARAG---------QDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLL 67
Query: 58  RQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILH 117
           +    +   +D   S+ LH+A+    +G     ++++E L++      +A   W +T LH
Sbjct: 68  KHGADV-NAIDIMGSTPLHLAA---LIG----HLEIVEVLLK-HGADVNAVDTWGDTPLH 118
Query: 118 LCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
           L      LE ++VLL++  D   +NA+D +G +   +++
Sbjct: 119 LAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 27/162 (16%)
Query: 1   MESKLYEAALAGSVTSLLEFLQKD--RLILERAA----MNCPSETPLHVAALLRHKDFAK 54
           +  KL EAA AG         Q D  R+++   A     +    TPLH+AA   H +  +
Sbjct: 14  LGKKLLEAARAG---------QDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVE 64
Query: 55  EILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVET 114
            +L+    +   +D   S+ LH+A+    +G     ++++E L++      +A   W +T
Sbjct: 65  VLLKHGADV-NAIDIXGSTPLHLAA---LIG----HLEIVEVLLK-HGADVNAVDTWGDT 115
Query: 115 ILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
            LHL      LE ++VLL++  D   +NA+D +G +   +++
Sbjct: 116 PLHLAAIMGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISI 154

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
2etb_A	256	Transient receptor potential cation channel subfam	3e-15
2etb_A	256	Transient receptor potential cation channel subfam	8e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-04
2rfa_A	232	Transient receptor potential cation channel subfa	5e-13
2rfa_A	232	Transient receptor potential cation channel subfa	5e-08
2rfa_A	232	Transient receptor potential cation channel subfa	1e-04
2pnn_A	273	Transient receptor potential cation channel subfa	3e-12
2pnn_A	273	Transient receptor potential cation channel subfa	5e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-08
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-07
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-07
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-05

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 73.3 bits (180), Expect = 3e-15
 Identities = 38/192 (19%), Positives = 56/192 (29%), Gaps = 37/192 (19%)

Query: 4   KLYEAALAGS---VTSLLEFLQK--DRLILERAAMNCPSETPLHVAALLR---HKDFAKE 55
           +L+     G    +T LLE+L+     L           +T L  A L            
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 56  ILRQKPGIAGEL----------DSRKSSALHIASQKRYVGMKSNRIDVLEELVRA----- 100
           +L+                     +  SALHIA +K         +  ++ LV       
Sbjct: 65  LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK-------RSLQCVKLLVENGADVH 117

Query: 101 -------RPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILH 153
                            + E  L L     Q + +  LLEN      L A D  G ++LH
Sbjct: 118 LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLH 177

Query: 154 LAVADKQIEYYN 165
             V        N
Sbjct: 178 ALVMIADNSPEN 189

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 45.5 bits (108), Expect = 8e-06
 Identities = 19/120 (15%), Positives = 32/120 (26%), Gaps = 30/120 (25%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAG--ELDSRKSSALHIASQKRYVGMKSNRIDVLE 95
           E PL +AA  +  D    +L      A     DS  ++ LH          +        
Sbjct: 137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPE-------- 188

Query: 96  ELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
                             + L + +    L+    L             +  G++ L LA
Sbjct: 189 -----------------NSALVIHMYDGLLQMGARLCPTVQL---EEISNHQGLTPLKLA 228

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 68.3 bits (167), Expect = 1e-13
 Identities = 41/184 (22%), Positives = 60/184 (32%), Gaps = 38/184 (20%)

Query: 5   LYEAALAGSV---TSLLEFL-QKDRLILERAAMNCPS-ETPLHVAALLR---HKDFAKEI 56
           L++    GS      LL FL    + + +       + +T L  A L       D    +
Sbjct: 9   LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPIL 68

Query: 57  LR--QKPGIAGEL--------DSRKSSALHIASQKRYVGMKSNRIDVLEELV-------- 98
           L   +K G   E           R  +ALHIA ++            +E LV        
Sbjct: 69  LDIAEKTGNMREFINSPFRDVYYRGQTALHIAIER-------RCKHYVELLVEKGADVHA 121

Query: 99  -----RARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILH 153
                  +P        + E  L L    NQ   +  L EN      L  +D  G ++LH
Sbjct: 122 QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLH 181

Query: 154 LAVA 157
             VA
Sbjct: 182 ALVA 185

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 10/107 (9%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIA--GELDSRKSSALHIASQKRY--VGMKSNRIDV 93
           E PL +AA          +       A     DSR ++ LH                  +
Sbjct: 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM 200

Query: 94  LEELVR--ARPLAASAPLIWV----ETILHLCVKHNQLEALKVLLEN 134
            + L+   A+    +     +     + L +  K  ++   + ++  
Sbjct: 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRR 247

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 66.5 bits (163), Expect = 5e-13
 Identities = 34/177 (19%), Positives = 63/177 (35%), Gaps = 34/177 (19%)

Query: 5   LYEAALAGSVTSLLEFLQKDRLILERAAMNCPS---ETPLHVAALLRHKDFAKEILRQKP 61
           L  AA    V +L + L       E   ++      ET LH+AAL  + + A  ++   P
Sbjct: 7   LLLAAKENDVQALSKLL-----KFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61

Query: 62  GIAGEL----DSRKSSALHIASQKRYVGMKSNRIDVLEELV------------RARPLAA 105
            +  E          +ALHIA            ++++  L+                   
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVIN-------QNVNLVRALLARGASVSARATGSVFHYRP 114

Query: 106 SAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
              + + E  L         E +++L+E+  D   + A+D  G ++LH+ +      
Sbjct: 115 HNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD---IRAQDSLGNTVLHILILQPNKT 168

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 51.8 bits (125), Expect = 5e-08
 Identities = 34/209 (16%), Positives = 63/209 (30%), Gaps = 49/209 (23%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAG----ELDSRKSSALHIASQKRYVGMKSNRIDV 93
           E+PL +AA         ++L+ +    G    +  +   +ALHIA+         + ++ 
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFE----GCEVHQRGAMGETALHIAALY-------DNLEA 52

Query: 94  LEELVRA----RPLAASAPLIWVETILHLCVKHNQLEALKVLLEN----------TDDSE 139
              L+ A         ++ L   +T LH+ V +  +  ++ LL            +    
Sbjct: 53  AMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHY 112

Query: 140 FLNAKDDYGMSILHLAVADKQIEYYNQSECC-------------YANGFTAWDILANSKR 186
             +    YG   L  A            E                + G T   IL     
Sbjct: 113 RPHNLIYYGEHPLSFAA------CVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPN 166

Query: 187 KMKDWEIGELLRRAGA-ISAKEMQQPATK 214
           K    ++  LL         K ++     
Sbjct: 167 KTFACQMYNLLLSYDGGDHLKSLELVPNN 195

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 64.8 bits (158), Expect = 3e-12
 Identities = 38/185 (20%), Positives = 65/185 (35%), Gaps = 42/185 (22%)

Query: 5   LYEAALAG---SVTSLLEFLQKDRLILERAAMNCPS----ETPLHVAALLRHK------- 50
           +++A        + SLL FLQ+                  +T L  A L  H        
Sbjct: 17  IFDAVAQSNCQELESLLPFLQR--SKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74

Query: 51  ---DFAKEILRQKPGI---AGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRA---- 100
              D A++    K  +     +   +  +ALHIA ++         + ++  LV      
Sbjct: 75  LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIER-------RNMTLVTLLVENGADV 127

Query: 101 ---------RPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSI 151
                    +         + E  L L    NQL  +K LL+N+     ++A+D  G ++
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTV 187

Query: 152 LHLAV 156
           LH  V
Sbjct: 188 LHALV 192

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 20/129 (15%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAG--ELDSRKSSALHIASQ--KRYVGMKSNRIDV 93
           E PL +AA        K +L+     A     DS  ++ LH   +     V        +
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208

Query: 94  LEELV-RARPLAASAPLIWVE-----TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDY 147
             E++     L  +  L  +      T L L     ++  L  +L+          ++ +
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ----------REIH 258

Query: 148 GMSILHLAV 156
                H A 
Sbjct: 259 EPECRHAAA 267

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 21/173 (12%), Positives = 53/173 (30%), Gaps = 27/173 (15%)

Query: 5   LYEAALAGSVTSLLEFLQKDRLILERAAMNCPSE---TPLHVAALLRHKDFAKEILRQKP 61
           L  A    +    L+ +           ++  ++   + LH A L+  +D A   +    
Sbjct: 177 LMRAMEFRN-REALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGI 235

Query: 62  GIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV--RARPLAASAPL---------- 109
            +    D+  +  L+++ +          + + +EL+      L  + P           
Sbjct: 236 DV-NMEDNEHTVPLYLSVRA-------AMVLLTKELLQKTDVFLIQACPYHNGTTVLPDR 287

Query: 110 IWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
           +     +      ++ E L++L E  D+   +    + G              
Sbjct: 288 VVWLDFVPAAADPSKQEVLQLLQEKLDE---VVRSLNTGAGGAVKRKKKAAPA 337

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 17/131 (12%)

Query: 38  ETPLHVAALL--RHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLE 95
           +T LH    L   + +  K +++         D    + L  A +           + L+
Sbjct: 139 QTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEF-------RNREALD 190

Query: 96  ELVRARPLAASAPL----IWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSI 151
            ++   P  +S  L        + LH  +  N  +     +E   D   +N +D+     
Sbjct: 191 LMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID---VNMEDNEHTVP 247

Query: 152 LHLAVADKQIE 162
           L+L+V    + 
Sbjct: 248 LYLSVRAAMVL 258

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 16/122 (13%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAG----ELDSRKSSALHIASQKRYVGMKSNRIDV 93
           ETPL  A   R+++    ++   P  +       + + +S LH A          N  DV
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILI-------NWEDV 226

Query: 94  LEELVR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSI 151
               V                   L+L V+   +   K LL+ TD           G ++
Sbjct: 227 AMRFVEMGIDVNMED---NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTV 283

Query: 152 LH 153
           L 
Sbjct: 284 LP 285

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 20/155 (12%), Positives = 44/155 (28%), Gaps = 44/155 (28%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
           + P+H+A +    D    ++            R      + ++        +  +V E  
Sbjct: 85  QKPIHLAVMANKTDLVVALVEGA-------KERGQMPESLLNEC-------DEREVNEIG 130

Query: 98  VRAR------PL--AASAPLIWVETI--------------------LHLCVKHNQLEALK 129
              +       L         ++E I                    L   ++    EAL 
Sbjct: 131 SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALD 190

Query: 130 VLLENTDDSE--FLNAKDDYGMSILHLAVADKQIE 162
           ++++         L+  +  G S LH A+     +
Sbjct: 191 LMMDTVPSKSSLRLDYANKQGNSHLHWAILINWED 225

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 30/147 (20%), Positives = 46/147 (31%), Gaps = 35/147 (23%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            T LH+A      D AK +       +          +H+A          N+ D++  L
Sbjct: 54  CTALHLACKFGCVDTAKYLASVGEVHS---LWHGQKPIHLAVMA-------NKTDLVVAL 103

Query: 98  VRA------RPLAASAPLIWVE--------------TILHLCVK--HNQLEALKVLLENT 135
           V         P +        E              T LH CV      LE +K+L++  
Sbjct: 104 VEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG 163

Query: 136 DDSEFLNAKDDYGMSILHLAVADKQIE 162
                  AKD    + L  A+  +  E
Sbjct: 164 AS---PTAKDKADETPLMRAMEFRNRE 187

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 11/132 (8%), Positives = 32/132 (24%), Gaps = 27/132 (20%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGI------------AGELDSRKSSALHIASQKRYVG 85
             PL+++         KE+L++                           +  A+      
Sbjct: 245 TVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP---- 300

Query: 86  MKSNRIDVLEELVR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNA 143
              ++ +VL+ L       + +               K       ++ L  +     +  
Sbjct: 301 ---SKQEVLQLLQEKLDEVVRSL---NTGAGGAVKRKKKAAPAVKRMKLAPSAP---VRT 351

Query: 144 KDDYGMSILHLA 155
           +         ++
Sbjct: 352 RSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 33/140 (23%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
              +HVAA     D  + ++          +    +ALH+A +          +D  + L
Sbjct: 21  MEKIHVAARKGQTDEVRRLIETGVSP-TIQNRFGCTALHLACKF-------GCVDTAKYL 72

Query: 98  VR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEF--------------- 140
                            +  +HL V  N+ + +  L+E   +                  
Sbjct: 73  ASVGEVHSLWHG-----QKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVN 127

Query: 141 ---LNAKDDYGMSILHLAVA 157
               + K   G + LH  V 
Sbjct: 128 EIGSHVKHCKGQTALHWCVG 147

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 61.3 bits (150), Expect = 3e-11
 Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 10/127 (7%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
             PLH A +       +E+L  KP +  + D      LH +             ++   L
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-------QAHEITSFL 55

Query: 98  VR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
           +           P     T  H+      LE +K L +     + LN   + G++ LHLA
Sbjct: 56  LSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVTCLHLA 114

Query: 156 VADKQIE 162
           V  K  E
Sbjct: 115 VGKKWFE 121

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 57.1 bits (139), Expect = 7e-10
 Identities = 28/164 (17%), Positives = 55/164 (33%), Gaps = 21/164 (12%)

Query: 5   LYEAALAGSVTSLLEFLQKDRLILERAAMNCPSE---TPLHVAALLRHKDFAKEILRQ-- 59
           L++A +      + E L       + + +    +    PLH +   +  +    +L +  
Sbjct: 6   LHQACMENEFFKVQELL-----HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 60  KPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLA-ASAPLIWVETILHL 118
              +    D    +  HIA            ++V++ L         +       T LHL
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSV-------GNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113

Query: 119 CVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
            V     E  + L+EN      +  KD +    LH A +   ++
Sbjct: 114 AVGKKWFEVSQFLIENGAS---VRIKDKFNQIPLHRAASVGSLK 154

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 51.7 bits (125), Expect = 5e-08
 Identities = 19/126 (15%), Positives = 44/126 (34%), Gaps = 10/126 (7%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            T LH+A   +  + ++ ++     +    D      LH A+           + ++E L
Sbjct: 108 VTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASV-------GSLKLIELL 159

Query: 98  VRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVA 157
                 A +       T L   +     +A  +L+E        +  D+ G     +A+ 
Sbjct: 160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE--YDLVDNKGAKAEDVALN 217

Query: 158 DKQIEY 163
           ++  ++
Sbjct: 218 EQVKKF 223

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 61.0 bits (149), Expect = 4e-11
 Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 18/133 (13%)

Query: 38  ETPLHVAALLRHKDFAKEILR---QKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVL 94
           ++ LH+A +   K    E++R            ++ + + LH+A          N+ ++ 
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT-------NQPEIA 61

Query: 95  EELVR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLE---NTDDSEFLNAKDDYGM 149
           E L+     P           T LHL  +   L ++ VL +          L A +  G 
Sbjct: 62  EALLGAGCDPELRD---FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 118

Query: 150 SILHLAVADKQIE 162
           + LHLA     + 
Sbjct: 119 TCLHLASIHGYLG 131

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 34/172 (19%)

Query: 5   LYEAALAGS--VTSLLEFLQKDRLILERAAMNCPS---ETPLHVAALLRHKDFAKEILRQ 59
           L+ A   G      +L   Q        + +   +    T LH+A++  +    + ++  
Sbjct: 82  LHLACEQGCLASVGVL--TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL 139

Query: 60  KPGI-AGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVE----- 113
              + A E  + + +ALH+A             D++  L++     A      V      
Sbjct: 140 GADVNAQEPCNGR-TALHLAVDL-------QNPDLVSLLLKCG---AD-----VNRVTYQ 183

Query: 114 --TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEY 163
             +   L          + L + T ++                    +  E+
Sbjct: 184 GYSPYQLTWGRPSTRIQQQLGQLTLEN---LQMLPESEDEESYDTESEFTEF 232

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 29/108 (26%)

Query: 66  ELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWV-----------ET 114
           +L     S LH+A              +  E++R         +              +T
Sbjct: 3   QLTEDGDSFLHLAIIH-------EEKALTMEVIRQ--------VKGDLAFLNFQNNLQQT 47

Query: 115 ILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
            LHL V  NQ E  + LL    D      +D  G + LHLA     + 
Sbjct: 48  PLHLAVITNQPEIAEALLGAGCD---PELRDFRGNTPLHLACEQGCLA 92

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 56.6 bits (138), Expect = 4e-10
 Identities = 36/183 (19%), Positives = 67/183 (36%), Gaps = 43/183 (23%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
           +  L  AA     +  K++   +     +++ R+S+ LH A+         NR+ V+E L
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY-------NRVSVVEYL 61

Query: 98  VRARPLAASAPL----IWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILH 153
                L   A +          LH    +   E  ++L+++      +N  D +  + LH
Sbjct: 62  -----LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV---VNVADLWKFTPLH 113

Query: 154 LAVADKQIEYYNQSECCY------AN-------GFTAWDILANSKRKMKDWEIGELLRRA 200
            A          + E C       A+       G T  D++ +        +I +LLR  
Sbjct: 114 EAA------AKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDT-----DIQDLLRGD 162

Query: 201 GAI 203
            A+
Sbjct: 163 AAL 165

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 49.3 bits (119), Expect = 1e-07
 Identities = 40/161 (24%), Positives = 59/161 (36%), Gaps = 28/161 (17%)

Query: 2   ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNC-----PSETPLHVAALLRHKDFAKEI 56
           + +L EAA AG V   ++ L          ++NC        TPLH AA        + +
Sbjct: 9   DRQLLEAAKAGDV-ETVKKL------CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61

Query: 57  LRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVR--ARPLAASAPLIWVET 114
           L+    +    D      LH A             +V E LV+  A    A    +W  T
Sbjct: 62  LQHGADV-HAKDKGGLVPLHNACSY-------GHYEVAELLVKHGAVVNVAD---LWKFT 110

Query: 115 ILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
            LH      + E  K+LL++  D      K+  G + L L 
Sbjct: 111 PLHEAAAKGKYEICKLLLQHGAD---PTKKNRDGNTPLDLV 148

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 40.8 bits (97), Expect = 1e-04
 Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 68  DSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEA 127
           +S     L  A++          ++ +++L   + +          T LH    +N++  
Sbjct: 5   NSEADRQLLEAAKA-------GDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57

Query: 128 LKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
           ++ LL++  D   ++AKD  G+  LH A +    E
Sbjct: 58  VEYLLQHGAD---VHAKDKGGLVPLHNACSYGHYE 89

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 56.3 bits (137), Expect = 7e-10
 Identities = 33/179 (18%), Positives = 57/179 (31%), Gaps = 38/179 (21%)

Query: 39  TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV 98
             +       +    +  L        + D    S LH A ++        R  V+E L+
Sbjct: 7   DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACRE-------GRSAVVEMLI 59

Query: 99  R--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
              AR    +      +T LHL   H   + ++ LL+   D   +NA +++G   LH A 
Sbjct: 60  MRGARINVMN---RGDDTPLHLAASHGHRDIVQKLLQYKAD---INAVNEHGNVPLHYAC 113

Query: 157 ADKQIEYYNQSECCY------AN-------GFTAWDILANSKRKMKDWEIGELLRRAGA 202
                 ++ Q +         A        G    D      R+     + E   + G 
Sbjct: 114 ------FWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRE----LLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 50.5 bits (122), Expect = 6e-08
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 16/127 (12%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            +PLH A         + ++ +   I   ++    + LH+A+            D++++L
Sbjct: 40  FSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASH-------GHRDIVQKL 91

Query: 98  VRARPLAAS--APLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
           ++ +   A   A        LH      Q +  + L+ N      ++  + YG   +  A
Sbjct: 92  LQYK---ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL---VSICNKYGEMPVDKA 145

Query: 156 VADKQIE 162
            A  +  
Sbjct: 146 KAPLREL 152

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 41.6 bits (99), Expect = 8e-05
 Identities = 20/99 (20%), Positives = 38/99 (38%), Gaps = 13/99 (13%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
           +TPLH+AA   H+D  +++L+ K  I   ++   +  LH A           +  V E+L
Sbjct: 73  DTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFW-------GQDQVAEDL 124

Query: 98  VR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLEN 134
           V   A     +    + E  +       +    +   + 
Sbjct: 125 VANGALVSICN---KYGEMPVDKAKAPLRELLRERAEKM 160

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 57.1 bits (139), Expect = 9e-10
 Identities = 29/126 (23%), Positives = 53/126 (42%), Gaps = 18/126 (14%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAG----ELDSRKSSALHIASQKRYVGMKSNRIDV 93
           +TPLH+A +  +      ++       G      ++ + + LH+A              V
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQ-GGRELDIYNNLRQTPLHLAVIT-------TLPSV 61

Query: 94  LEELVR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLEN-TDDSEFLNAKDDYGMS 150
           +  LV   A P+A        +T  HL  +H     L+ LL++    +  L A++  G++
Sbjct: 62  VRLLVTAGASPMALD---RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLT 118

Query: 151 ILHLAV 156
            LH+AV
Sbjct: 119 ALHVAV 124

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 52.5 bits (127), Expect = 3e-08
 Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 19/131 (14%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
           +TPLH+A +       + ++         LD    +A H+A +             L  L
Sbjct: 47  QTPLHLAVITTLPSVVRLLVTAGASPM-ALDRHGQTAAHLACEH-------RSPTCLRAL 98

Query: 98  VRARPLAASAPLIWV-----ETILHLCVKHNQLEALKVLLENTDDSEFLNAKD-DYGMSI 151
           + +   A     +        T LH+ V     E +++LLE   D   ++A D   G S 
Sbjct: 99  LDSA--APGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD---IDAVDIKSGRSP 153

Query: 152 LHLAVADKQIE 162
           L  AV +  + 
Sbjct: 154 LIHAVENNSLS 164

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 52.1 bits (126), Expect = 5e-08
 Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 17/130 (13%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKS---SALHIASQKRYVGMKSNRIDVL 94
           +T  H+A   R     + +L        +L++R     +ALH+A             + +
Sbjct: 80  QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT-------ECQETV 132

Query: 95  EELVR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSIL 152
           + L+   A   A         + L   V++N L  +++LL++  +   +NA+   G S L
Sbjct: 133 QLLLERGADIDAVDIKSGR--SPLIHAVENNSLSMVQLLLQHGAN---VNAQMYSGSSAL 187

Query: 153 HLAVADKQIE 162
           H A     + 
Sbjct: 188 HSASGRGLLP 197

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 48.6 bits (117), Expect = 6e-07
 Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 27/133 (20%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGI-AGELDSRKSSALHIASQKRYVGMKSNRIDVLEE 96
            T LHVA     ++  + +L +   I A ++ S +S  L  A +        N + +++ 
Sbjct: 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRS-PLIHAVEN-------NSLSMVQL 168

Query: 97  LVRARPLAASAPLIWVE-------TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGM 149
           L++     A+     V        + LH       L  ++ L+ +  D    + K+ +  
Sbjct: 169 LLQHG---AN-----VNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD---SSLKNCHND 217

Query: 150 SILHLAVADKQIE 162
           + L +A + + I+
Sbjct: 218 TPLMVARSRRVID 230

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.1 bits (100), Expect = 9e-05
 Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 15/104 (14%)

Query: 63  IAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPL----IWVETILHL 118
           +A   D    + LHIA  +         +  +  LV          L       +T LHL
Sbjct: 1   MATRADEDGDTPLHIAVVQ-------GNLPAVHRLVN-LFQQGGRELDIYNNLRQTPLHL 52

Query: 119 CVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
            V       +++L+          A D +G +  HLA   +   
Sbjct: 53  AVITTLPSVVRLLVTAGAS---PMALDRHGQTAAHLACEHRSPT 93

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 56.7 bits (138), Expect = 1e-09
 Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 11/125 (8%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
           ET LH+AA     D AK +L          D+   + LH A          +   V + L
Sbjct: 58  ETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSA-------DAQGVFQIL 109

Query: 98  VRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVA 157
           +R R     A +    T L L  +      L+ L+ +  D   +NA DD G S LH A A
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLGKSALHWAAA 166

Query: 158 DKQIE 162
              ++
Sbjct: 167 VNNVD 171

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 55.2 bits (134), Expect = 5e-09
 Identities = 24/129 (18%), Positives = 51/129 (39%), Gaps = 19/129 (14%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            TPLH A     +   + ++R +           ++ L +A++            +LE+L
Sbjct: 91  RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-------AVEGMLEDL 143

Query: 98  VRARPLAASAPL----IWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILH 153
                + + A +       ++ LH     N ++A  VLL+N  +    + +++   + L 
Sbjct: 144 -----INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQNNREETPLF 195

Query: 154 LAVADKQIE 162
           LA  +   E
Sbjct: 196 LAAREGSYE 204

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 54.8 bits (133), Expect = 6e-09
 Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 18/136 (13%)

Query: 31  AAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNR 90
           A+ +       +            + + Q   +  + D    +ALH+A++        +R
Sbjct: 17  ASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARY-------SR 69

Query: 91  IDVLEELVRARPLAASAPL----IWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDD 146
            D  + L     L ASA          T LH  V  +     ++L+ N   +  L+A+  
Sbjct: 70  SDAAKRL-----LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN--RATDLDARMH 122

Query: 147 YGMSILHLAVADKQIE 162
            G + L LA       
Sbjct: 123 DGTTPLILAARLAVEG 138

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 51.7 bits (125), Expect = 7e-08
 Identities = 28/123 (22%), Positives = 44/123 (35%), Gaps = 20/123 (16%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            TPL +AA L  +   ++++     +   +D    SALH A+         N +D    L
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAV-------NNVDAAVVL 176

Query: 98  VRARPLAASAPL----IWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILH 153
                L   A         ET L L  +    E  KVLL++  +    +  D        
Sbjct: 177 -----LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN---RDITDHMDRLPRD 228

Query: 154 LAV 156
           +A 
Sbjct: 229 IAQ 231

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 56.3 bits (137), Expect = 2e-09
 Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 21/130 (16%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
           ET LH+AA     D AK +L          D+   + LH A          +   V + L
Sbjct: 26  ETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSA-------DAQGVFQIL 77

Query: 98  VRARPLAASAPLIWV-----ETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSIL 152
           +R R     A  +        T L L  +      L+ L+ +  D   +NA DD G S L
Sbjct: 78  IRNR-----ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLGKSAL 129

Query: 153 HLAVADKQIE 162
           H A A   ++
Sbjct: 130 HWAAAVNNVD 139

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 55.5 bits (135), Expect = 3e-09
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 42/186 (22%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            TPLH A     +   + ++R +           ++ L +A++            +LE+L
Sbjct: 59  RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-------AVEGMLEDL 111

Query: 98  VRARPLAASAPL----IWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILH 153
                + + A +       ++ LH     N ++A  VLL+N  +    + +++   + L 
Sbjct: 112 -----INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQNNREETPLF 163

Query: 154 LAVADKQIEYYNQSECC------YAN-------GFTAWDILANSKRKMKDWEIGELLRRA 200
           LA            E        +AN            DI           +I  LL   
Sbjct: 164 LAA------REGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH----DIVRLLDEY 213

Query: 201 GAISAK 206
             + + 
Sbjct: 214 NLVRSP 219

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.5 bits (109), Expect = 6e-06
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 18/118 (15%)

Query: 49  HKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAP 108
                 + + Q   +  + D    +ALH+A++        +R D  + L     L ASA 
Sbjct: 3   APAVISDFIYQGASLHNQTDRTGETALHLAARY-------SRSDAAKRL-----LEASAD 50

Query: 109 L----IWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
                    T LH  V  +     ++L+ N   +  L+A+   G + L LA       
Sbjct: 51  ANIQDNMGRTPLHAAVSADAQGVFQILIRN--RATDLDARMHDGTTPLILAARLAVEG 106

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 11/125 (8%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
           + PLH AA   +  + +E L  + G+   LD   S+AL+ A             D++E L
Sbjct: 74  DNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHG-------GHKDIVEML 125

Query: 98  VRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVA 157
                +  +      +T LH        + +++LL         + ++        +A  
Sbjct: 126 FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGAR---TDLRNIEKKLAFDMATN 182

Query: 158 DKQIE 162
                
Sbjct: 183 AACAS 187

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 17/119 (14%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
           +  +  A          E+  ++  I   +     +     + K               L
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGDII-YITDMSDTNWWKGTSKGRT-----------GL 60

Query: 98  VRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
           + +  +A  A  I     LH   K   L  L+  L+N      +N  D  G + L+ A 
Sbjct: 61  IPSNYVAEQAESID--NPLHEAAKRGNLSWLRECLDNRVG---VNGLDKAGSTALYWAC 114

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 32/178 (17%), Positives = 63/178 (35%), Gaps = 33/178 (18%)

Query: 5   LYEAALAGS--VTSLLEFLQKDRLILERA---AMNCPSETPLHVAALLRHKDFAKEILRQ 59
           L+  A   S   +  L   +    I   A   AM+C   TPL +A L R +     +++ 
Sbjct: 129 LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA 188

Query: 60  KPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVE------ 113
                   +  + SALH A+             ++  ++ +  L        +E      
Sbjct: 189 GADP-TIYNKSERSALHQAAAN-------RDFGMMVYMLNSTKLKGD-----IEELDRNG 235

Query: 114 -TILHLCVKHNQLEAL---KVLLE-----NTDDSEFLNAKDDYGMSILHLAVADKQIE 162
            T L +   +   + +   K+L+E     + D +   +++   G + LH A     + 
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMP 293

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 29/133 (21%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGEL-------DSRKSSALHIASQKRYVGMKSNR 90
            T LH  A     + +++++  +              D  +++ L +A           R
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA-------RR 178

Query: 91  IDVLEELVRARPLAASAPLIWVE-------TILHLCVKHNQLEALKVLLENTDDSEFLNA 143
             ++  L     + A A             + LH    +     +  +L +T     +  
Sbjct: 179 RRLVAYL-----MKAGAD---PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE 230

Query: 144 KDDYGMSILHLAV 156
            D  GM+ L +  
Sbjct: 231 LDRNGMTALMIVA 243

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 52.6 bits (127), Expect = 5e-08
 Identities = 27/135 (20%), Positives = 47/135 (34%), Gaps = 17/135 (12%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIA--GELDSRKSSALHIASQKRYVGMKSNRIDVLE 95
            + LH AA  R       +L          ELD    +AL I +           +   +
Sbjct: 200 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQ----VASAK 255

Query: 96  ELVR--ARPLAASAPLIWV-----ETILHLCVKHNQLEALKVLLENTD-DSEFLNAKDDY 147
            LV   A+     A           T LH   + + +  +K L+     +    + +D+ 
Sbjct: 256 LLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN---KDKQDED 312

Query: 148 GMSILHLAVADKQIE 162
           G + + LA  + +IE
Sbjct: 313 GKTPIMLAAQEGRIE 327

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 22/150 (14%)

Query: 15  TSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSA 74
            SLLE      +  +R  +   S  P        +     +       I  E +      
Sbjct: 39  HSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLG-DFNHTNLQIPTEPEPESPIK 97

Query: 75  LHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWV---ETILHLCVKHNQLEALKVL 131
           LH  +             + E +        S  +I      T+LH    ++  E  + L
Sbjct: 98  LHTEAA--------GSYAITEPI-----TRESVNIIDPRHNRTVLHWIASNSSAEKSEDL 144

Query: 132 LENTDDSEF-----LNAKDDYGMSILHLAV 156
           + +           +NA D    + L LAV
Sbjct: 145 IVHEAKECIAAGADVNAMDCDENTPLMLAV 174

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 22/136 (16%), Positives = 39/136 (28%), Gaps = 28/136 (20%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
              LH  A        + I R+   I         + LH  +         +  +  E+L
Sbjct: 95  PIKLHTEAA-GSYAITEPITRESVNIID--PRHNRTVLHWIASN-------SSAEKSEDL 144

Query: 98  VRARPLAASAPLIWV-----------ETILHLCVKHNQLEALKVLLENTDDSEFLNAKDD 146
           +    +  +   I              T L L V   +   +  L++   D       + 
Sbjct: 145 I----VHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD---PTIYNK 197

Query: 147 YGMSILHLAVADKQIE 162
              S LH A A++   
Sbjct: 198 SERSALHQAAANRDFG 213

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 20/129 (15%)

Query: 38  ETPLHVAALLRHKDFAK----------EILRQKPGIAGELDSRKSSALHIASQKRYVGMK 87
            T L + A    +D             ++             +  +ALH A+Q       
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV------ 289

Query: 88  SNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDY 147
            + + +++ LV  +           +T + L  +  ++E +  L++       + A D  
Sbjct: 290 -SNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS---VEAVDAT 345

Query: 148 GMSILHLAV 156
             +   LA 
Sbjct: 346 DHTARQLAQ 354

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 56.0 bits (136), Expect = 3e-09
 Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 16/127 (12%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
           E PLH AA L      K +L      + + D + ++AL+ A            +  ++  
Sbjct: 63  EFPLHQAATLEDTKIVKILLFSGLDDS-QFDDKGNTALYYAVDS-------GNMQTVKLF 114

Query: 98  VR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
           V+   R +         +T  +  V  N +  +   L                +S +H+ 
Sbjct: 115 VKKNWRLMFYGK--TGWKTSFYHAVMLNDVSIVSYFLSEIPS----TFDLAILLSCIHIT 168

Query: 156 VADKQIE 162
           + +  ++
Sbjct: 169 IKNGHVD 175

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 14/129 (10%), Positives = 36/129 (27%), Gaps = 18/129 (13%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            + +H+     H D    +L                 + +A            I++L+ L
Sbjct: 162 LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDN-------KDIEMLQAL 214

Query: 98  VRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVA 157
            +      +     + +     V  +  E  K+++E   +     +        +     
Sbjct: 215 FKYD---IN-----IYSANLENVLLDDAEIAKMIIEKHVE---YKSDSYTKDLDIVKNNK 263

Query: 158 DKQIEYYNQ 166
             +I   N+
Sbjct: 264 LDEIISKNK 272

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 15/122 (12%), Positives = 34/122 (27%), Gaps = 19/122 (15%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            +  + A    +      +L         L++     LH A+             +++ L
Sbjct: 32  HSASYYAIADNNVRLVCTLLNAGALK-NLLENE--FPLHQAATL-------EDTKIVKIL 81

Query: 98  VR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSI-LHL 154
           +                 T L+  V    ++ +K+ ++       L      G     + 
Sbjct: 82  LFSGLDDSQFD---DKGNTALYYAVDSGNMQTVKLFVKKNWR---LMFYGKTGWKTSFYH 135

Query: 155 AV 156
           AV
Sbjct: 136 AV 137

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 39.8 bits (94), Expect = 6e-04
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 13/95 (13%)

Query: 68  DSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEA 127
           D    SA + A          N + ++  L+ A    A   L+  E  LH        + 
Sbjct: 28  DVHGHSASYYAIAD-------NNVRLVCTLLNAG---ALKNLLENEFPLHQAATLEDTKI 77

Query: 128 LKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
           +K+LL +  D    +  DD G + L+ AV    ++
Sbjct: 78  VKILLFSGLD---DSQFDDKGNTALYYAVDSGNMQ 109

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 56.3 bits (137), Expect = 4e-09
 Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 19/136 (13%)

Query: 26  LILERAAMNCPS---ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKR 82
           L+   A  N       TPLHVA    + D  K +L +             + LHIA+++ 
Sbjct: 165 LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQ- 222

Query: 83  YVGMKSNRIDVLEELVRARPLAAS--APLIWVETILHLCVKHNQLEALKVLLENTDDSEF 140
                 N+++V   L++      S  A  +   T LHL  +    E + +LL    +   
Sbjct: 223 ------NQVEVARSLLQYG---GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN--- 270

Query: 141 LNAKDDYGMSILHLAV 156
            N  +  G++ LHL  
Sbjct: 271 GNLGNKSGLTPLHLVA 286

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 56.0 bits (136), Expect = 5e-09
 Identities = 36/163 (22%), Positives = 67/163 (41%), Gaps = 25/163 (15%)

Query: 5   LYEAALAGSVTSLLEFLQKDRLILERAAMNCPS---ETPLHVAALLRHKDFAKEILRQKP 61
           L+ A+  G +  +++ L     +   A+ N  +   ETPLH+AA   H + AK +L+ K 
Sbjct: 18  LHVASFMGHL-PIVKNL-----LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA 71

Query: 62  GIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVR--ARPLAASAPLIWVETILHLC 119
            +         + LH A++           ++++ L+   A P  A+       T LH+ 
Sbjct: 72  KV-NAKAKDDQTPLHCAARI-------GHTNMVKLLLENNANPNLAT---TAGHTPLHIA 120

Query: 120 VKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
            +   +E +  LLE              G + LH+A    ++ 
Sbjct: 121 AREGHVETVLALLEKEAS---QACMTKKGFTPLHVAAKYGKVR 160

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 54.4 bits (132), Expect = 2e-08
 Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 16/127 (12%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            TPLH+AA     + A+ +L+           +  + LH+A+Q+          +++  L
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQE-------GHAEMVALL 264

Query: 98  VR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
           +   A     +       T LHL  +   +    VL+++      ++A    G + LH+A
Sbjct: 265 LSKQANGNLGN---KSGLTPLHLVAQEGHVPVADVLIKHGVM---VDATTRMGYTPLHVA 318

Query: 156 VADKQIE 162
                I+
Sbjct: 319 SHYGNIK 325

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 54.0 bits (131), Expect = 2e-08
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 26/131 (19%)

Query: 39  TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV 98
           TPLH+AA   H +    +L ++      +  +  + LH+A++         ++ V E L 
Sbjct: 115 TPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKY-------GKVRVAELL- 165

Query: 99  RARPLAASAPLIWVE-------TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSI 151
               L   A             T LH+ V HN L+ +K+LL         ++    G + 
Sbjct: 166 ----LERDAH---PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS---PHSPAWNGYTP 215

Query: 152 LHLAVADKQIE 162
           LH+A    Q+E
Sbjct: 216 LHIAAKQNQVE 226

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.9 bits (128), Expect = 5e-08
 Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 13/120 (10%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            TPLHVA+   +    K +L+ +  +         S LH A+Q+          D++  L
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQHQADVN-AKTKLGYSPLHQAAQQ-------GHTDIVTLL 363

Query: 98  VR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
           ++  A P   +       T L +  +   +    VL   TD++ F+   D + MS     
Sbjct: 364 LKNGASP---NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.5 bits (127), Expect = 7e-08
 Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 26/132 (19%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            TPLHVA+ + H    K +L++        + +  + LH+A++           +V + L
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARA-------GHTEVAKYL 66

Query: 98  VRARPLAASAPLIWVE-------TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMS 150
                L   A    V        T LH   +      +K+LLEN  +    N     G +
Sbjct: 67  -----LQNKAK---VNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN---PNLATTAGHT 115

Query: 151 ILHLAVADKQIE 162
            LH+A  +  +E
Sbjct: 116 PLHIAAREGHVE 127

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 51.7 bits (125), Expect = 1e-07
 Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 25/157 (15%)

Query: 5   LYEAALAGSVTSLLEFLQKDRLILERAAMNCPSE---TPLHVAALLRHKDFAKEILRQKP 61
           L+ AA  G    ++  L     + ++A  N  ++   TPLH+ A   H   A  +++   
Sbjct: 249 LHLAAQEGHA-EMVALL-----LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGV 302

Query: 62  GIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVR--ARPLAASAPLIWVETILHLC 119
            +         + LH+AS           I +++ L++  A   A +       + LH  
Sbjct: 303 MVD-ATTRMGYTPLHVASHY-------GNIKLVKFLLQHQADVNAKT---KLGYSPLHQA 351

Query: 120 VKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
            +    + + +LL+N       N     G + L +A 
Sbjct: 352 AQQGHTDIVTLLLKNGAS---PNEVSSDGTTPLAIAK 385

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.0 bits (118), Expect = 9e-07
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 19/136 (13%)

Query: 26  LILERAAMNCPSE---TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKR 82
           L+    + N  S    TPLH+AA   H +    +L ++       +    + LH+ +Q+ 
Sbjct: 231 LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQE- 288

Query: 83  YVGMKSNRIDVLEELVR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEF 140
                   + V + L++      A +       T LH+   +  ++ +K LL++  D   
Sbjct: 289 ------GHVPVADVLIKHGVMVDATT---RMGYTPLHVASHYGNIKLVKFLLQHQAD--- 336

Query: 141 LNAKDDYGMSILHLAV 156
           +NAK   G S LH A 
Sbjct: 337 VNAKTKLGYSPLHQAA 352

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 55.2 bits (134), Expect = 5e-09
 Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 18/120 (15%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
             PLH AA   + D A+ ++ Q   +   ++S   + L IA ++          ++L+  
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVG-AVNSEGDTPLDIAEEE-------AMEELLQNE 158

Query: 98  VRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVA 157
           V  +        + +E       +    +A + L     +          G + LH+A A
Sbjct: 159 VNRQG-------VDIEAARKEEERIMLRDARQWLNSGHIN---DVRHAKSGGTALHVAAA 208

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 49.0 bits (118), Expect = 6e-07
 Identities = 17/119 (14%), Positives = 40/119 (33%), Gaps = 17/119 (14%)

Query: 39  TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV 98
               +   +  +   +  + ++     ++     +    A             + +  L+
Sbjct: 10  RNEQLKRWIGSETDLEPPVVKRKKT--KVKFDDGAVFLAACSS-------GDTEEVLRLL 60

Query: 99  R--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
              A    A+   +   T LH     + ++ +K L+EN  +   +N  D+ G   LH A
Sbjct: 61  ERGADINYAN---VDGLTALHQACIDDNVDMVKFLVENGAN---INQPDNEGWIPLHAA 113

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 48.7 bits (117), Expect = 8e-07
 Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 15/121 (12%)

Query: 39  TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV 98
           T LH A +  + D  K ++     I  + D+     LH A+           +D+ E L+
Sbjct: 75  TALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASC-------GYLDIAEYLI 126

Query: 99  R--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
              A   A ++     +T L +  +    E L+  +        + A       I+    
Sbjct: 127 SQGAHVGAVNS---EGDTPLDIAEEEAMEELLQNEVNRQGV--DIEAARKEEERIMLRDA 181

Query: 157 A 157
            
Sbjct: 182 R 182

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 21/141 (14%), Positives = 43/141 (30%), Gaps = 18/141 (12%)

Query: 26  LILERAAMNCPSE--TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRY 83
            +++R       +       A      +    +L +   I    +    +ALH A     
Sbjct: 27  PVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACID-- 83

Query: 84  VGMKSNRIDVLEELVR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFL 141
                + +D+++ LV   A               LH       L+  + L+        +
Sbjct: 84  -----DNVDMVKFLVENGANINQPD---NEGWIPLHAAASCGYLDIAEYLISQGAH---V 132

Query: 142 NAKDDYGMSILHLAVADKQIE 162
            A +  G + L +A  +   E
Sbjct: 133 GAVNSEGDTPLDIAEEEAMEE 153

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 27/133 (20%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            TPLH AA     +    +L         ++    SA+ +A             + L   
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSAVDMAPTP-------ELRERLTYE 176

Query: 98  VRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVA 157
            +              ++L    + +  +  K L     +      +     + LH AV 
Sbjct: 177 FKGH------------SLLQAAREADLAKVKKTLALEIIN----FKQPQSHETALHCAV- 219

Query: 158 DKQIEYYNQSECC 170
                +  + +  
Sbjct: 220 --ASLHPKRKQVA 230

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 52.5 bits (127), Expect = 6e-08
 Identities = 36/165 (21%), Positives = 57/165 (34%), Gaps = 28/165 (16%)

Query: 5   LYEAALAGSVTSLLEFLQKDRLILERAAMNCPSE---TPLHVAALLRHKDFAKEILRQKP 61
           L EAA +G+   L+  L            +       TPLH+AA        + +L+   
Sbjct: 28  LLEAARSGNEEKLMALL-----TPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA 82

Query: 62  GIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPL----IWVETILH 117
            +    D      LH A             +V E L     L   A +    +W  T LH
Sbjct: 83  DV-HAKDKGGLVPLHNACSY-------GHYEVTELL-----LKHGACVNAMDLWQFTPLH 129

Query: 118 LCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
                N++E   +LL +  D       + +G S + +A   +  E
Sbjct: 130 EAASKNRVEVCSLLLSHGAD---PTLVNCHGKSAVDMAPTPELRE 171

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 35/185 (18%), Positives = 61/185 (32%), Gaps = 45/185 (24%)

Query: 5   LYEAALAGS--VTSLLEFLQKDRLILERA---AMNCPSETPLHVAALLRHKDFAKEILRQ 59
           L+EAA      V SLL        +   A    +NC  ++ + +A     ++      + 
Sbjct: 128 LHEAASKNRVEVCSLL--------LSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG 179

Query: 60  KP--------------------GIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVR 99
                                  I  +      +ALH A    +      R  V E L+R
Sbjct: 180 HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLH----PKRKQVAELLLR 235

Query: 100 --ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVA 157
             A     +       T LH+  +    + ++VL ++      +NA D  G + LH A  
Sbjct: 236 KGANVNEKN---KDFMTPLHVAAERAHNDVMEVLHKHGAK---MNALDSLGQTALHRAAL 289

Query: 158 DKQIE 162
              ++
Sbjct: 290 AGHLQ 294

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 30/142 (21%), Positives = 50/142 (35%), Gaps = 30/142 (21%)

Query: 26  LILERAAMNCPSE---TPLHVAALLRHKDFAKEILRQKPGIAG----ELDSRKSSALHIA 78
           L    A      E     L  AA   +++    +L              D RKS+ LH+A
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPL----NVNCHASDGRKSTPLHLA 65

Query: 79  SQKRYVGMKSNRIDVLEELVRARPLAASAPL----IWVETILHLCVKHNQLEALKVLLEN 134
           +         NR+ +++ L     L   A +          LH    +   E  ++LL++
Sbjct: 66  AGY-------NRVRIVQLL-----LQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH 113

Query: 135 TDDSEFLNAKDDYGMSILHLAV 156
                 +NA D +  + LH A 
Sbjct: 114 GAC---VNAMDLWQFTPLHEAA 132

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 52.4 bits (127), Expect = 3e-08
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 15/121 (12%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
              +  A      +  +E++     +  + D    + LH A+         NRID+++  
Sbjct: 10  TWDIVKATQYGIYERCRELVEAGYDV-RQPDKENVTLLHWAAIN-------NRIDLVKYY 61

Query: 98  VR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
           +   A        L    T LH   +   L  +  L++   D    +  D  G S +HLA
Sbjct: 62  ISKGAIVDQLGGDLNS--TPLHWATRQGHLSMVVQLMKYGAD---PSLIDGEGCSCIHLA 116

Query: 156 V 156
            
Sbjct: 117 A 117

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.0 bits (118), Expect = 5e-07
 Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 10/124 (8%)

Query: 39  TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV 98
           + +H+AA   H      ++ +   +   +D    + L  A+       +++ +D    L+
Sbjct: 111 SCIHLAAQFGHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAAY------RTHSVDPTRLLL 163

Query: 99  RARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVAD 158
                          T LH  V       + +LLE   +   ++A++  G S L LA   
Sbjct: 164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN---VDAQNIKGESALDLAKQR 220

Query: 159 KQIE 162
           K + 
Sbjct: 221 KNVW 224

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 51.3 bits (124), Expect = 4e-08
 Identities = 29/120 (24%), Positives = 44/120 (36%), Gaps = 15/120 (12%)

Query: 39  TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV 98
             +H  A     D  KE LR+   +  + D R  + L  AS           I+ +  L+
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF-------GEIETVRFLL 56

Query: 99  R--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
              A P   +      E+ L L       + + +LLE   D   +N  D  G + L  AV
Sbjct: 57  EWGADPHILA---KERESALSLASTGGYTDIVGLLLERDVD---INIYDWNGGTPLLYAV 110

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 49.3 bits (119), Expect = 2e-07
 Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 26/125 (20%)

Query: 39  TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV 98
           TPL  A+     +  + +L         L   + SAL +AS            D++  L+
Sbjct: 38  TPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTG-------GYTDIVGLLL 89

Query: 99  RARPLAASAPLIWVE-------TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSI 151
                        +        T L   V+ N ++ ++ LL    D   L  + D G + 
Sbjct: 90  ERD---VD-----INIYDWNGGTPLLYAVRGNHVKCVEALLARGAD---LTTEADSGYTP 138

Query: 152 LHLAV 156
           + LAV
Sbjct: 139 MDLAV 143

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 40.5 bits (96), Expect = 2e-04
 Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 26/119 (21%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
           E+ L +A+   + D    +L +   I    D    + L  A +        N +  +E L
Sbjct: 70  ESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRG-------NHVKCVEAL 121

Query: 98  VRARPLAASAPLIWVE-------TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGM 149
                LA  A    +        T + L V     +  +V+  +      L   +    
Sbjct: 122 -----LARGAD---LTTEADSGYTPMDLAVALGYRKVQQVIENHILK---LFQSNLVPA 169

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 28/163 (17%), Positives = 56/163 (34%), Gaps = 22/163 (13%)

Query: 5   LYEAALAGSVTSLLEFLQKDRLILERAAMNCPSE---TPLHVAALLRHKDFAKEILRQKP 61
           L +++L G      + +Q  R+I E    + P++   T LH A    H +  K +++   
Sbjct: 41  LLDSSLEGE----FDLVQ--RIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV 94

Query: 62  GIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVR--ARPLAASAPLIWVETILHLC 119
            +    DS   + LH A+         N + V + LV   A   A +   +         
Sbjct: 95  NV-NAADSDGWTPLHCAASC-------NNVQVCKFLVESGAAVFAMTYSDMQTAADKCEE 146

Query: 120 VKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
           ++    +  + L    +    +   +   +  L         E
Sbjct: 147 MEEGYTQCSQFLYGVQEK---MGIMNKGVIYALWDYEPQNDDE 186

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 17/121 (14%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
           +  L        +    E +    G+  + +    + L  +S +          D+++ +
Sbjct: 6   QVSLPPGKRTNLRKTGSERIAH--GMRVKFNPLPLALLLDSSLE-------GEFDLVQRI 56

Query: 98  VR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
           +     P   S P     T LH  V     E +K L++   +   +NA D  G + LH A
Sbjct: 57  IYEVDDP---SLPNDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCA 110

Query: 156 V 156
            
Sbjct: 111 A 111

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 50.5 bits (122), Expect = 5e-08
 Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 16/127 (12%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            +PLH+AA   H    + +LR              + LH+A+ +          +++E L
Sbjct: 35  TSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE-------GHANIVEVL 86

Query: 98  VR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
           ++  A   A     +   T LH   +HN  E +++L++   D   ++ +  +  +   ++
Sbjct: 87  LKHGADVNAKD---MLKMTALHWATEHNHQEVVELLIKYGAD---VHTQSKFCKTAFDIS 140

Query: 156 VADKQIE 162
           + +   +
Sbjct: 141 IDNGNED 147

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 49.3 bits (119), Expect = 1e-07
 Identities = 32/127 (25%), Positives = 46/127 (36%), Gaps = 17/127 (13%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
              L  AA     D  + ++          D   +S LH+A+Q              E L
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFTT--DWLGTSPLHLAAQY-------GHFSTTEVL 53

Query: 98  VRARPLAAS--APLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
           +RA     S  A      T LH+         ++VLL++  D   +NAKD   M+ LH A
Sbjct: 54  LRAG---VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD---VNAKDMLKMTALHWA 107

Query: 156 VADKQIE 162
                 E
Sbjct: 108 TEHNHQE 114

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 51.8 bits (125), Expect = 5e-08
 Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 20/122 (16%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAG----ELDSRKSSALHIASQKRYVGMKSNRIDV 93
           ETP   AA    +      L     +       +D    +AL   +              
Sbjct: 46  ETPWWTAARKADEQAL-SQL-----LEDRDVDAVDENGRTALLFVAGL-------GSDKC 92

Query: 94  LEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILH 153
           +  L  A        +    T LH+   + + E ++ L+E   D   +  +D+ G++ L 
Sbjct: 93  VRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD---IEVEDERGLTALE 149

Query: 154 LA 155
           LA
Sbjct: 150 LA 151

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 24/146 (16%), Positives = 44/146 (30%), Gaps = 36/146 (24%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            T LH+AA     +  + ++     I    D R  +AL +A +         +       
Sbjct: 112 LTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREI-------LKTTPKGNP 163

Query: 98  VR--AR-------PLAASAPLIWVE------------TILHLCVKHNQLEALKVLLEN-T 135
           ++   R        +       + E             + +L    +  +   V   +  
Sbjct: 164 MQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVA 223

Query: 136 DDSEFLNAKDDYGMSILHLAVADKQI 161
           +D     AKD      L  AVA+  I
Sbjct: 224 ED----VAKD--YEDGLEYAVAESVI 243

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 50.5 bits (122), Expect = 6e-08
 Identities = 25/119 (21%), Positives = 43/119 (36%), Gaps = 16/119 (13%)

Query: 39  TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV 98
             L  AA        + +L ++      L+    +AL +               +  EL+
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM--------FGSTAIALELL 55

Query: 99  R--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
           +  A P           + +H   +   L+ LKVL+E+  D   +N  D  G   +HLA
Sbjct: 56  KQGASPNVQDT---SGTSPVHDAARTGFLDTLKVLVEHGAD---VNVPDGTGALPIHLA 108

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 47.8 bits (115), Expect = 5e-07
 Identities = 35/156 (22%), Positives = 56/156 (35%), Gaps = 26/156 (16%)

Query: 5   LYEAALAGSVTSLLEFLQKDRLILERAAMNCPSE---TPLHVAALLRHKDFAKEILRQKP 61
           L  AA  G V  +   L +     E    +  +    T L V         A E+L+Q  
Sbjct: 6   LSGAAARGDVQEVRRLLHR-----ELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGA 59

Query: 62  GIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAAS--APLIWVETILHLC 119
                 D+  +S +H A++          +D L+ LV      A    P       +HL 
Sbjct: 60  SP-NVQDTSGTSPVHDAART-------GFLDTLKVLVEHG---ADVNVPDGTGALPIHLA 108

Query: 120 VKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
           V+      +  L   +D    L+ +D  G++ L LA
Sbjct: 109 VQEGHTAVVSFLAAESD----LHRRDARGLTPLELA 140

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 49.3 bits (119), Expect = 1e-07
 Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 24/131 (18%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAG----ELDSRKSSALHIASQKRYVGMKSNRIDV 93
           ET LH+A++       + +L+      G      D    + LH A            + V
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQN-----GSDPNVKDHAGWTPLHEACNH-------GHLKV 58

Query: 94  LEELVRARPLAAS--APLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSI 151
           +E L++ +   A         ++ LH   K+  ++ +K+LL         NA + +G+  
Sbjct: 59  VELLLQHK---ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGAS---RNAVNIFGLRP 112

Query: 152 LHLAVADKQIE 162
           +     +    
Sbjct: 113 VDYTDDESMKS 123

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 30/155 (19%), Positives = 47/155 (30%), Gaps = 42/155 (27%)

Query: 68  DSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPL----IWVETILHLCVKHN 123
           + R  + LHIAS K         I  +E L     L   +          T LH    H 
Sbjct: 7   NHRGETLLHIASIK-------GDIPSVEYL-----LQNGSDPNVKDHAGWTPLHEACNHG 54

Query: 124 QLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECC-Y-----AN---- 173
            L+ +++LL++      +N       S LH A            +         A+    
Sbjct: 55  HLKVVELLLQHKAL---VNTTGYQNDSPLHDAA------KNGHVDIVKLLLSYGASRNAV 105

Query: 174 ---GFTAWDILANSKRKMKDWEIGELLRRAGAISA 205
              G    D   +   K     +  L  +  + SA
Sbjct: 106 NIFGLRPVDYTDDESMK----SLLLLPEKNESSSA 136

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 50.9 bits (123), Expect = 1e-07
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 19/129 (14%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            +PLH AA   H D    +++    I       + + L  A++        N ++ ++ L
Sbjct: 12  RSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAEN-------NHLEAVKYL 63

Query: 98  VRARPLAASAPL----IWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILH 153
                + A A +        T LHL  K    E ++ LL N      +N +DD G + + 
Sbjct: 64  -----IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN--GQMDVNCQDDGGWTPMI 116

Query: 154 LAVADKQIE 162
            A   K ++
Sbjct: 117 WATEYKHVD 125

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 50.5 bits (122), Expect = 2e-07
 Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 42/185 (22%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            T LH+AA   H +  + +L          D    + +  A++          +D+++ L
Sbjct: 78  STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY-------KHVDLVKLL 130

Query: 98  VRARPLAASAPL----IWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILH 153
                L+  + +          LH       ++  ++LL    D   L+A + +G S LH
Sbjct: 131 -----LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD---LHAVNIHGDSPLH 182

Query: 154 LAVADKQIEYYNQSECC-Y-----AN-------GFTAWDILANSKRKMKDWEIGELLRRA 200
           +A         N+ +C        ++       G T     + + +          + +A
Sbjct: 183 IAA------RENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV----WSALQMSKA 232

Query: 201 GAISA 205
              SA
Sbjct: 233 LQDSA 237

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 49.7 bits (120), Expect = 2e-07
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 21/130 (16%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            TPL  AA   H +  K +++    +    D+  S+ LH+A++K          +V++ L
Sbjct: 45  RTPLMEAAENNHLEAVKYLIKAGALVD-PKDAEGSTCLHLAAKK-------GHYEVVQYL 96

Query: 98  VRARPLAASAPLIWV-----ETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSIL 152
                L+     +        T +    ++  ++ +K+LL    D   +N +D+     L
Sbjct: 97  -----LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD---INIRDNEENICL 148

Query: 153 HLAVADKQIE 162
           H A     ++
Sbjct: 149 HWAAFSGCVD 158

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 68  DSRKSSALHIASQKRYVGMKSNRIDVLEELVR--ARPLAASAPLIWVETILHLCVKHNQL 125
              K S LH A++          +D+   LV+  A     S       T L    ++N L
Sbjct: 8   HQNKRSPLHAAAEA-------GHVDICHMLVQAGANIDTCS---EDQRTPLMEAAENNHL 57

Query: 126 EALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
           EA+K L++       ++ KD  G + LHLA      E
Sbjct: 58  EAVKYLIKAGAL---VDPKDAEGSTCLHLAAKKGHYE 91

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 24/138 (17%), Positives = 46/138 (33%), Gaps = 24/138 (17%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
           +T LH+AA+L      +++     G+    +    +ALH+A +                L
Sbjct: 46  QTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACRV-------RAHTCACVL 97

Query: 98  VRAR------------PLAASAPLIWVETILHLCVKHN-QLEALKVLLENTDDSEFLNAK 144
           ++ R              +             +  + N + E      +       L A+
Sbjct: 98  LQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ---LEAE 154

Query: 145 DDYGMSILHLAVADKQIE 162
           +  G + LH+AV  K  E
Sbjct: 155 NYDGHTPLHVAVIHKDAE 172

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 49.1 bits (118), Expect = 5e-07
 Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 24/136 (17%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGI-AGELDSRKSSALHIASQKRYVGMKSNRIDVLEE 96
            TPLHVA + +  +  + +      +   E    ++  LH+A +            VLE 
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT-PLHLAVEA-------QAASVLEL 210

Query: 97  LVR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHL 154
           L++  A P A         T L   +        ++L  +              +S    
Sbjct: 211 LLKAGADPTARM---YGGRTPLGSALLRPNPILARLLRAHGAP---EPEDGGDKLSPCSS 264

Query: 155 A-------VADKQIEY 163
           +         D+  EY
Sbjct: 265 SGSDSDSDNRDEGDEY 280

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 25/164 (15%), Positives = 48/164 (29%), Gaps = 24/164 (14%)

Query: 5   LYEAALAGS---VTSLLE------FLQKDRLILERAAMNCPS-ETPLHVAALLRHKDFAK 54
           L+ A    +      LL+          D  + +       +   P  V +    ++  +
Sbjct: 82  LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE 141

Query: 55  EILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV--RARPLAASAPLIWV 112
                        +    + LH+A             +++  L    A            
Sbjct: 142 PRDEDWRLQLEAENYDGHTPLHVAVIH-------KDAEMVRLLRDAGADLNKPEPTCGR- 193

Query: 113 ETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
            T LHL V+      L++LL+   D     A+   G + L  A+
Sbjct: 194 -TPLHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSAL 233

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.8 bits (107), Expect = 2e-05
 Identities = 39/187 (20%), Positives = 64/187 (34%), Gaps = 36/187 (19%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAG--ELDSRKSSALHIASQKRYVGMKSNRIDVLE 95
           +T LH+A + +H+ F   +L    G       +    +ALH+A+              +E
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL-------GEASTVE 62

Query: 96  ELVR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLE-----NTDDSEFL-----NA 143
           +L    A  L A        T LHL  +        VLL+       D S+       + 
Sbjct: 63  KLYAAGAGVLVAE---RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119

Query: 144 KDDYGMSILHLAVA---DKQIEYYNQS-----ECCYANGFTAWDILANSKRKMKDWEIGE 195
             D   +   +      + + E  ++      E    +G T   +    K      E+  
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA----EMVR 175

Query: 196 LLRRAGA 202
           LLR AGA
Sbjct: 176 LLRDAGA 182

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 50.5 bits (122), Expect = 2e-07
 Identities = 27/138 (19%), Positives = 44/138 (31%), Gaps = 23/138 (16%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            TP  +AA+       K  L +   +  E D    +A   A+          ++  L+ L
Sbjct: 73  ATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVY-------GKVKALKFL 124

Query: 98  V---------RARPLAASAPLIWVETILHLCVKHNQLEALKVLLENT--DDSEFLNAKDD 146
                     R              T L    +   +E LK+LL+    D    +NA D+
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD----VNACDN 180

Query: 147 YGMSILHLAVADKQIEYY 164
            G + L  A+        
Sbjct: 181 MGRNALIHALLSSDDSDV 198

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 49.4 bits (119), Expect = 4e-07
 Identities = 37/174 (21%), Positives = 60/174 (34%), Gaps = 43/174 (24%)

Query: 5   LYEAALAGSVTSLLEFL--------QKDRLILERAAMNCPSETPLHVAALLRHKDFAKEI 56
             EAA+ G V   L+FL         + +   ++  +     T L  AA   H +   +I
Sbjct: 109 FMEAAVYGKV-KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL-KI 166

Query: 57  LRQKPGI-AGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWV--- 112
           L  + G      D+   +AL  A          +    +E +           L+     
Sbjct: 167 LLDEMGADVNACDNMGRNALIHALLS-------SDDSDVEAITHL--------LLDHGAD 211

Query: 113 --------ETILHLCVKHNQLEALKVLLENT--DDSEFLNAKDDYGMSILHLAV 156
                   +T L L V+   L  ++ LLE    +    +N  D  G + L LAV
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE----INDTDSDGKTALLLAV 261

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 48.2 bits (116), Expect = 1e-06
 Identities = 25/126 (19%), Positives = 40/126 (31%), Gaps = 25/126 (19%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
              L  A      D  +++L     +  + +    + LH A Q        +R D++E L
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-------SREDIVELL 58

Query: 98  VRARPLAASAPLIWVE-------TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMS 150
                L   A             T   L      ++ LK+ L    D   +N  D YG +
Sbjct: 59  -----LRHGAD---PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD---VNECDFYGFT 107

Query: 151 ILHLAV 156
               A 
Sbjct: 108 AFMEAA 113

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 21/134 (15%), Positives = 41/134 (30%), Gaps = 20/134 (14%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            TPLH A  +  +D  + +LR             ++   +A+           + +L+  
Sbjct: 40  WTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIA-------GSVKLLKLF 91

Query: 98  VR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLEN-------TDDSEFLNAKDDYG 148
           +   A          +  T       + +++ALK L +            E        G
Sbjct: 92  LSKGADVNECD---FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG 148

Query: 149 MSILHLAVADKQIE 162
            + L  A     +E
Sbjct: 149 ATALMDAAEKGHVE 162

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.5 bits (101), Expect = 9e-05
 Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 23/138 (16%)

Query: 38  ETPLHVAALLRHKDFAK---------EILRQKPGIAGELDSRKSSALHIASQKRYVGMKS 88
            T    AA+       K          + R+       L    ++AL  A++K       
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK------- 158

Query: 89  NRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEAL----KVLLENTDDSEFLNAK 144
             ++VL+ L+       +A        L   +  +    +     +LL++  D   +N +
Sbjct: 159 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVR 215

Query: 145 DDYGMSILHLAVADKQIE 162
            + G + L LAV  K + 
Sbjct: 216 GERGKTPLILAVEKKHLG 233

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 28/204 (13%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            T LH A    H +  + +L+    +  + D    S LHIA+            ++++ L
Sbjct: 41  RTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA-------GXDEIVKAL 92

Query: 98  VRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVA 157
           +  +    +A      T LH     N+ E   +LLE   +    +AKD Y  + +H A A
Sbjct: 93  L-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN---PDAKDHYDATAMHRAAA 148

Query: 158 DKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQ 210
              ++  +        +      G T   +  + +R     E  + L   GA    E ++
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERV----EEAKFLVTQGASIYIENKE 204

Query: 211 PATKVSITQTNS-----LTSHGNN 229
             T + + +          + G  
Sbjct: 205 EKTPLQVAKGGLGLILKRLAEGEE 228

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 27/131 (20%), Positives = 44/131 (33%), Gaps = 26/131 (19%)

Query: 39  TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV 98
              ++A   +  +  + IL  K       D    +ALH A             +++E L 
Sbjct: 9   MICNLAYSGKLDELKERILADKSLAT-RTDQDSRTALHWACSA-------GHTEIVEFL- 59

Query: 99  RARPLAASAPLIWVE-------TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSI 151
               L    P   V        + LH+       E +K LL        +NA +  G + 
Sbjct: 60  ----LQLGVP---VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH---VNAVNQNGCTP 109

Query: 152 LHLAVADKQIE 162
           LH A +  + E
Sbjct: 110 LHYAASKNRHE 120

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 29/164 (17%), Positives = 61/164 (37%), Gaps = 29/164 (17%)

Query: 5   LYEAALAGS--VTSLLEFLQKDRLILERAAMNCPSE--TPLHVAALLRHKDFAKEILRQK 60
           L+ A ++GS    +LL        +   A++   S+  +P+H AA   H +    ++   
Sbjct: 129 LFNACVSGSWDCVNLL--------LQHGASVQPESDLASPIHEAARRGHVECVNSLIAYG 180

Query: 61  PGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVR--ARPLAASAPLIWVETILHL 118
             I     S   + L++A +         +   +++L+   A            ++ LH 
Sbjct: 181 GNID-HKISHLGTPLYLACEN-------QQRACVKKLLESGADVNQGK----GQDSPLHA 228

Query: 119 CVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
            V+    E   +L++   D     AK+  G   + L   +  + 
Sbjct: 229 VVRTASEELACLLMDFGAD---TQAKNAEGKRPVELVPPESPLA 269

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 45.9 bits (110), Expect = 7e-06
 Identities = 22/134 (16%), Positives = 47/134 (35%), Gaps = 23/134 (17%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            +P+H AA+  H+   + ++ Q   +   + +   S LH A            +  ++ L
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHVSPLHEACLG-------GHLSCVKIL 111

Query: 98  VR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
           ++  A+    +       T L         + + +LL++      +  + D   S +H A
Sbjct: 112 LKHGAQVNGVT---ADWHTPLFNACVSGSWDCVNLLLQHGAS---VQPESD-LASPIHEA 164

Query: 156 VADKQIEYYNQSEC 169
                       EC
Sbjct: 165 A------RRGHVEC 172

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 48.5 bits (117), Expect = 3e-07
 Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 16/127 (12%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
              +H  A      +    + Q+  I    D    + L  A+          +I V+E L
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAH-------GQIAVVEFL 55

Query: 98  VR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
           ++  A P          E+ L L       + +K+LL+   D   +N  D  G + L  A
Sbjct: 56  LQNGADPQLLG---KGRESALSLACSKGYTDIVKMLLDCGVD---VNEYDWNGGTPLLYA 109

Query: 156 VADKQIE 162
           V    ++
Sbjct: 110 VHGNHVK 116

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 46.6 bits (112), Expect = 1e-06
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 26/125 (20%)

Query: 39  TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV 98
           TPL  AA        + +L+        L   + SAL +A  K          D+++ L+
Sbjct: 38  TPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSK-------GYTDIVKMLL 89

Query: 99  RARPLAASAPLIWVE-------TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSI 151
                        V        T L   V  N ++ +K+LLE+  D      + D G + 
Sbjct: 90  DCG---VD-----VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD---PTIETDSGYNS 138

Query: 152 LHLAV 156
           + LAV
Sbjct: 139 MDLAV 143

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 47.4 bits (114), Expect = 7e-07
 Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 16/120 (13%)

Query: 39  TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV 98
             L  AA     D  + ++     +    D+   + LH+A+           ++++E L+
Sbjct: 16  KKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFN-------GHLEIVEVLL 67

Query: 99  RARPLAAS--APLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
           +     A   A      T L L      LE ++VLL+N  D   +NA D  G + LHLA 
Sbjct: 68  KNG---ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAA 121

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 47.0 bits (113), Expect = 1e-06
 Identities = 30/127 (23%), Positives = 59/127 (46%), Gaps = 16/127 (12%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            TPLH+AA   H +  + +L+    +   +D    + L +A+           ++++E L
Sbjct: 48  WTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALF-------GHLEIVEVL 99

Query: 98  VR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
           ++  A   A     +   T LHL      LE ++VLL+N  D   +NA+D +G +   ++
Sbjct: 100 LKNGADVNAND---MEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDIS 153

Query: 156 VADKQIE 162
           + +   +
Sbjct: 154 IDNGNED 160

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 48.9 bits (116), Expect = 7e-07
 Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 8/127 (6%)

Query: 38  ETPLHVAALLRH---KDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRID-- 92
           E+ L  A    +       + +L          DS   + LH       +   S      
Sbjct: 165 ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYY 224

Query: 93  ---VLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGM 149
              ++  +V+ +     +     E+  +      +   L+ L      +  LNA+D  G 
Sbjct: 225 LDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD 284

Query: 150 SILHLAV 156
           + L++A 
Sbjct: 285 TCLNIAA 291

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 47.5 bits (114), Expect = 9e-07
 Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 20/122 (16%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAG----ELDSRKSSALHIASQKRYVGMKSNRIDV 93
           ETP   AA    +      L     +       +D    +AL   +              
Sbjct: 45  ETPWWTAARKADEQAL-SQL-----LEDRDVDAVDENGRTALLFVAGL-------GSDKC 91

Query: 94  LEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILH 153
           +  L  A        +    T LH+   + + E ++ L+E   D   +  +D+ G++ L 
Sbjct: 92  VRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGAD---IEVEDERGLTALE 148

Query: 154 LA 155
           LA
Sbjct: 149 LA 150

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 46.2 bits (111), Expect = 1e-06
 Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 16/126 (12%)

Query: 39  TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV 98
             L  AA     D  + ++     +    D    + L++A+           ++++E L+
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAH-------GHLEIVEVLL 67

Query: 99  R--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
           +  A   A         T LHL      LE  +VLL++  D   +NA+D +G +   +++
Sbjct: 68  KNGADVNAVD---AIGFTPLHLAAFIGHLEIAEVLLKHGAD---VNAQDKFGKTAFDISI 121

Query: 157 ADKQIE 162
            +   +
Sbjct: 122 GNGNED 127

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 46.7 bits (112), Expect = 2e-06
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 22/125 (17%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            TPL++A      + AK ++ +   I    +S   S    A  +        R ++L  +
Sbjct: 40  NTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGAQ-------GRTEILAYM 91

Query: 98  VRARPLAASAPLIWV-----ETILHLCVKHNQLEALKVLLENTD-DSEFLNAKDDYGMSI 151
                L  + P +          L    +   ++ +K+LLE+   D   ++ ++D+G + 
Sbjct: 92  -----LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED---IDFQNDFGYTA 143

Query: 152 LHLAV 156
           L  AV
Sbjct: 144 LIEAV 148

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 43.6 bits (104), Expect = 2e-05
 Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 29/127 (22%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
              L  A     K   + +      +  E+D+  ++ L+IA          N I++ + L
Sbjct: 7   GALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHN-------NDIEIAKAL 58

Query: 98  VRARPLAASAPLIWVE-------TILHLCVKHNQLEALKVLLEN--TDDSEFLNAKDDYG 148
           +      A      +        +         + E L  +L++   D    LN  + YG
Sbjct: 59  IDRG---AD-----INLQNSISDSPYLYAGAQGRTEILAYMLKHATPD----LNKHNRYG 106

Query: 149 MSILHLA 155
            + L  A
Sbjct: 107 GNALIPA 113

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 42.1 bits (100), Expect = 7e-05
 Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 27/130 (20%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
           ++P   A      +    +L+       + +    +AL  A++K         ID ++ L
Sbjct: 73  DSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK-------GHIDNVKLL 125

Query: 98  VRARPLAASA-----------PLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDD 146
           +                     LI    +          + +K+L+EN  D    + KD+
Sbjct: 126 LED----GREDIDFQNDFGYTALIE--AVGLREGNQLYQDIVKLLMENGAD---QSIKDN 176

Query: 147 YGMSILHLAV 156
            G + +  A 
Sbjct: 177 SGRTAMDYAN 186

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 45.4 bits (109), Expect = 3e-06
 Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 16/121 (13%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            T L V  L  + + A+ +L +        D    + +H A++          +D L+ L
Sbjct: 39  RTALQVMKL-GNPEIARRLLLRGANPD-LKDRTGFAVIHDAARA-------GFLDTLQTL 89

Query: 98  V--RARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA 155
           +  +A               LHL  K   L  ++ L+++   +  +  ++  G +   LA
Sbjct: 90  LEFQADVNIED---NEGNLPLHLAAKEGHLRVVEFLVKH--TASNVGHRNHKGDTACDLA 144

Query: 156 V 156
            
Sbjct: 145 R 145

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 45.4 bits (109), Expect = 4e-06
 Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 21/123 (17%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
              L  AA     +    +L+    +    +    +AL +              ++   L
Sbjct: 6   GNELASAAARGDLEQLTSLLQNNVNV-NAQNGFGRTALQVMKL--------GNPEIARRL 56

Query: 98  VRARPLAASAPL----IWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILH 153
                L   A           ++H   +   L+ L+ LLE   D   +N +D+ G   LH
Sbjct: 57  -----LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD---VNIEDNEGNLPLH 108

Query: 154 LAV 156
           LA 
Sbjct: 109 LAA 111

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 45.2 bits (108), Expect = 3e-06
 Identities = 23/126 (18%), Positives = 37/126 (29%), Gaps = 26/126 (20%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAG----ELDSRKSSALHIASQKRYVGMKSNRIDV 93
              L  AA     +  + +L       G      +S     + +               V
Sbjct: 13  ADWLATAAARGRVEEVRALLEA-----GANPNAPNSYGRRPIQVMMM--------GSARV 59

Query: 94  LEELVR--ARPLAASAPLIWVETI-LHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMS 150
            E L+   A P  A        T  +H   +   L+ L VL         L+ +D +G  
Sbjct: 60  AELLLLHGAEPNCADP---ATLTRPVHDAAREGFLDTLVVLHRAGAR---LDVRDAWGRL 113

Query: 151 ILHLAV 156
            + LA 
Sbjct: 114 PVDLAE 119

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 17/125 (13%), Positives = 35/125 (28%), Gaps = 18/125 (14%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
             P+ V  +      A+ +L           +  +  +H A+++         +D L  L
Sbjct: 46  RRPIQVMMM-GSARVAELLLLHGAEPNCADPATLTRPVHDAARE-------GFLDTLVVL 97

Query: 98  VR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSIL--H 153
            R  AR     A   W    + L  +    +  + L             +   +      
Sbjct: 98  HRAGARLDVRDA---WGRLPVDLAEELGHRDVARYLRAAAGG---TRGSNHARIDAAEGP 151

Query: 154 LAVAD 158
             + D
Sbjct: 152 SDIPD 156

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 32/169 (18%), Positives = 53/169 (31%), Gaps = 34/169 (20%)

Query: 5   LYEAALAGSVTSLLEFLQKDRLILERAAMNCPSE---TPLHVAALLRHKDFAKEILRQKP 61
           L +AAL G     LE +Q  + + E    + P+E   T LH A    +      ++    
Sbjct: 25  LLDAALTGE----LEVVQ--QAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITA-- 76

Query: 62  GIAG----ELDSRKSSALHIASQKRYVGMKSNRIDVLEELVR--ARPLAASAPLIWVETI 115
              G      DS   + LH A+         N   +   LV+  A   A +       T 
Sbjct: 77  ---GANVNSPDSHGWTPLHCAASC-------NDTVICMALVQHGAAIFATTLSDGA--TA 124

Query: 116 LHLC--VKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
              C   +    +    L +       +   +   +  L    A+   E
Sbjct: 125 FEKCDPYREGYADCATYLADVEQS---MGLMNSGAVYALWDYSAEFGDE 170

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 42.2 bits (100), Expect = 8e-05
 Identities = 17/126 (13%), Positives = 39/126 (30%), Gaps = 17/126 (13%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
              L  AAL    +  ++ +++      + +    +ALH A              +++ L
Sbjct: 22  LVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICG-------ANYSIVDFL 73

Query: 98  VR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDD-YGMSILHL 154
           +   A   +  +      T LH     N       L+++      + A     G +    
Sbjct: 74  ITAGANVNSPDS---HGWTPLHCAASCNDTVICMALVQHGAA---IFATTLSDGATAFEK 127

Query: 155 AVADKQ 160
               ++
Sbjct: 128 CDPYRE 133

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 17/127 (13%), Positives = 30/127 (23%), Gaps = 14/127 (11%)

Query: 39  TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV 98
           TPLH AA          +++    I     S  ++A            +    D    L 
Sbjct: 89  TPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDP-----YREGYADCATYLA 143

Query: 99  R--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV 156
                    ++        L         E   +     +    +  +D    +    A 
Sbjct: 144 DVEQSMGLMNSGA---VYALWDYSAEFGDE---LSFREGESVT-VLRRDGPEETDWWWAA 196

Query: 157 ADKQIEY 163
              Q  Y
Sbjct: 197 LHGQEGY 203

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 44.3 bits (106), Expect = 4e-06
 Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 26/125 (20%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            TPLH+AA   H +  K +L     +    D    + LH+A++          ++V++ L
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN-------GHLEVVKLL 54

Query: 98  VRARPLAASAPLIWVE-------TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMS 150
           + A    A      V        T LHL  ++  LE +K+LLE   D   +NAKD  G +
Sbjct: 55  LEAG---AD-----VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRT 103

Query: 151 ILHLA 155
            LHLA
Sbjct: 104 PLHLA 108

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 44.3 bits (106), Expect = 4e-06
 Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 16/127 (12%)

Query: 31  AAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNR 90
             +    +     A      D  K+ + +   +           LH A+          +
Sbjct: 1   GPLGSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADC-------GQ 52

Query: 91  IDVLEELVR--ARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYG 148
           +++LE L+   A   A         T L   V    +  +K+LL    D      K   G
Sbjct: 53  LEILEFLLLKGADINAPD---KHHITPLLSAVYEGHVSCVKLLLSKGAD---KTVKGPDG 106

Query: 149 MSILHLA 155
           ++     
Sbjct: 107 LTAFEAT 113

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 44.4 bits (106), Expect = 5e-06
 Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 18/121 (14%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
           +  L  AA     +  +++L         L+      + +               V E L
Sbjct: 13  DAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM--------GSAQVAELL 63

Query: 98  VR--ARPLAASAPLIWVETI-LHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHL 154
           +   A P  A        T  +H   +   L+ L VL         L+  D +G   + L
Sbjct: 64  LLHGAEPNCAD---PATLTRPVHDAAREGFLDTLVVLHRAGAR---LDVCDAWGRLPVDL 117

Query: 155 A 155
           A
Sbjct: 118 A 118

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 23/192 (11%), Positives = 54/192 (28%), Gaps = 38/192 (19%)

Query: 39  TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV 98
             +  AA+L   +   E+  +  G   +    KS+ L+   +         R  +   L+
Sbjct: 8   RTVSAAAMLGTYEDFLELFEK--GYEDKESVLKSNILYDVLRN---NNDEARYKISMFLI 62

Query: 99  R--ARPLAASAPLIWVETILHLCVKHNQ------LEALKVLLENTDDSEFLNAKDDYGMS 150
              A   + +       T+     +          E  K+ LE   D   + A       
Sbjct: 63  NKGADIKSRTK---EGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD---ITALYKPYKI 116

Query: 151 ILHLAVADKQIEYYNQSECCYA--------------NGFTAWDILANSKRKMKDWEIGEL 196
           ++   + +  ++                         G TA + +   ++        ++
Sbjct: 117 VVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP----IALKM 172

Query: 197 LRRAGA-ISAKE 207
           +       + KE
Sbjct: 173 MEDYIKKYNLKE 184

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 25/162 (15%), Positives = 45/162 (27%), Gaps = 19/162 (11%)

Query: 2   ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPS---ETPLHVAALLRHKDFAKEILR 58
           E   + AA+ G  +S L+ L    L+     +            +AA   H      +  
Sbjct: 93  EVICFVAAITGC-SSALDTLCL--LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE 149

Query: 59  QKPGIAGELDSRK-SSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWV--ETI 115
             P     +   +   A  +A++          + VL  L    P  A+A +        
Sbjct: 150 LAPTEIMAMIQAENYHAFRLAAEN-------GHLHVLNRLCELAPTEATAMIQAENYYAF 202

Query: 116 LHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVA 157
               V       +  LL+       L   + +        V 
Sbjct: 203 RWAAVGRGHHNVINFLLDCPVM---LAYAEIHEFEYGEKYVN 241

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 43.9 bits (105), Expect = 2e-05
 Identities = 27/129 (20%), Positives = 53/129 (41%), Gaps = 20/129 (15%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            TPL VA +L  ++   +++     +  + D   S+AL  A +        NR+ + E+L
Sbjct: 36  RTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKN-------NRLGIAEKL 87

Query: 98  VRARPLAASAPL----IWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILH 153
                L+  + +       +T L   +     E    LLE+  +   +N ++  G + L 
Sbjct: 88  -----LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN---VNDRNLEGETPLI 139

Query: 154 LAVADKQIE 162
           +A    + E
Sbjct: 140 VASKYGRSE 148

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 42.8 bits (102), Expect = 4e-05
 Identities = 22/129 (17%), Positives = 40/129 (31%), Gaps = 26/129 (20%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
           E    +            +   +       DS   + L +A             + +++L
Sbjct: 9   EIVEKIKDEKSINQNLDFLRNYR-------DSYNRTPLMVACML-------GMENAIDKL 54

Query: 98  VRARPLAASAPL----IWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILH 153
                +     L    I   T L   VK+N+L   + LL    +   +N KD  G + L 
Sbjct: 55  -----VENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN---VNTKDFSGKTPLM 106

Query: 154 LAVADKQIE 162
            ++     E
Sbjct: 107 WSIIFGYSE 115

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 40.4 bits (96), Expect = 7e-05
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 26/123 (21%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEEL 97
            TPLH AA   H +  K++L +   +        ++ LH+A++           ++++ L
Sbjct: 10  NTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKN-------GHAEIVKLL 61

Query: 98  VRARPLAASAPLIWVE-------TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMS 150
                LA  A    V        T  HL  K+   E +K+L     D   +NA+      
Sbjct: 62  -----LAKGAD---VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD---VNARSWGSSH 110

Query: 151 ILH 153
             H
Sbjct: 111 HHH 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.98
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.98
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.98
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.98
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.98
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.9
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.83
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.77

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=8.3e-40  Score=283.82  Aligned_cols=205  Identities=22%  Similarity=0.175  Sum_probs=178.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      ++||||+|++.|+.++|++|++.+++....+.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus         9 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~   87 (282)
T 1oy3_D            9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACR   87 (282)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence            579999999999999999999998874444667899999999999999999999999999998 8899999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCC----------------------------------------------CcccccCCCCc
Q 036662           81 KRYVGMKSNRIDVLEELVRARPL----------------------------------------------AASAPLIWVET  114 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~----------------------------------------------~~~~~d~~g~t  114 (316)
                      .|+.++       +++|++..+.                                              .++.+|..|+|
T Consensus        88 ~~~~~~-------v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  160 (282)
T 1oy3_D           88 VRAHTC-------ACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (282)
T ss_dssp             TTCHHH-------HHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             cCCcch-------hHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence            999888       9999983322                                              26677889999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCccccccccCC-CCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccC
Q 036662          115 ILHLCVKHNQLEALKVLLENTDDSEFLNAKDDY-GMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKR  186 (316)
Q Consensus       115 ~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~-g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~  186 (316)
                      |||+|+..|+.+++++|+++|++   ++.++.. |+||||+|+..|+.++++       +++.+|..|+||||+|+.   
T Consensus       161 ~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~---  234 (282)
T 1oy3_D          161 PLHVAVIHKDAEMVRLLRDAGAD---LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL---  234 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHT---
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHH---
Confidence            99999999999999999999999   9998864 999999999999999998       899999999999999999   


Q ss_pred             CCcHHHHHHHHHHhCCCcccccCCcccccccccc
Q 036662          187 KMKDWEIGELLRRAGAISAKEMQQPATKVSITQT  220 (316)
Q Consensus       187 ~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~  220 (316)
                       .++.+++++|+++|++++.....+.+|......
T Consensus       235 -~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          235 -RPNPILARLLRAHGAPEPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             -SSCHHHHHHHHHTTCCCCCCC------------
T ss_pred             -cCCcHHHHHHHHcCCCcCcCCCcccccccccCC
Confidence             899999999999999999998888888765544

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=2.5e-38  Score=266.27  Aligned_cols=203  Identities=18%  Similarity=0.177  Sum_probs=186.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhC--CCcccccCCCCCcHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQK--PGIAGELDSRKSSALHIA   78 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~~~~d~~g~tpLh~A   78 (316)
                      ++||||.|++.|+.++++.|++++++...  .+|..|.||||+|+..|+.+++++|+++|  +++....|..|.||||+|
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A   79 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLL--QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA   79 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccc--cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence            48999999999999999999999987643  25889999999999999999999999999  666333889999999999


Q ss_pred             HHcCCcccccccHHHHHHHHHhCC--CCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 036662           79 SQKRYVGMKSNRIDVLEELVRARP--LAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV  156 (316)
Q Consensus        79 ~~~g~~~~~~~~~~iv~~Ll~~~~--~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~  156 (316)
                      +..|+.++       +++|++ .+  .+++..|..|+||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+
T Consensus        80 ~~~~~~~~-------~~~Ll~-~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~  148 (228)
T 2dzn_A           80 CSVGNLEV-------VKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS---VRIKDKFNQIPLHRAA  148 (228)
T ss_dssp             HHHCCHHH-------HHHHHS-SSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHH
T ss_pred             HHcCCHHH-------HHHHHh-CCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC---ccccCCCCCCHHHHHH
Confidence            99999888       999999 55  78889999999999999999999999999999999   9999999999999999


Q ss_pred             hcCCcceec--------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHH-HhCCCcccccCCcccccccccc
Q 036662          157 ADKQIEYYN--------QSECCYANGFTAWDILANSKRKMKDWEIGELLR-RAGAISAKEMQQPATKVSITQT  220 (316)
Q Consensus       157 ~~~~~~~v~--------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll-~~ga~~~~~~~~~~~~~~~~~~  220 (316)
                      ..|+.++++        +++.+|..|+||||+|+.    .++.+++++|+ ++|++.+.....+.++.+....
T Consensus       149 ~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          149 SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA----EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             HTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS
T ss_pred             HcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHH----cCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH
Confidence            999999998        688899999999999999    89999999999 9999999999888888876644

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=2.4e-39  Score=277.53  Aligned_cols=210  Identities=22%  Similarity=0.185  Sum_probs=167.8

Q ss_pred             CCcHHHHHHHcC-------------CHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCccccc
Q 036662            1 MESKLYEAALAG-------------SVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGEL   67 (316)
Q Consensus         1 m~t~L~~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~   67 (316)
                      +.||||.|+..|             +.++++.|+++++++...  .|..|.||||+|+..|+.+++++|+++|+++ +.+
T Consensus        10 g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~   86 (253)
T 1yyh_A           10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQ--TDRTGETALHLAARYSRSDAAKRLLEASADA-NIQ   86 (253)
T ss_dssp             ------------------------------------------C--CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCC
T ss_pred             CCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccc--cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCC
Confidence            479999999988             899999999999987432  4889999999999999999999999999998 889


Q ss_pred             CCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCC
Q 036662           68 DSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDY  147 (316)
Q Consensus        68 d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~  147 (316)
                      |..|+||||+|+..|+.++       +++|++..+.+++.+|..|+||||+|+..|+.+++++|++.|++   ++.+|.+
T Consensus        87 ~~~g~t~L~~A~~~~~~~~-------v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~  156 (253)
T 1yyh_A           87 DNMGRTPLHAAVSADAQGV-------FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDL  156 (253)
T ss_dssp             CTTSCCHHHHHHHHTCHHH-------HHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC---TTCBCTT
T ss_pred             CCCCCCHHHHHHHcCCHHH-------HHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC---CCCcCCC
Confidence            9999999999999999988       99999966668999999999999999999999999999999999   9999999


Q ss_pred             CCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCcccccccccc
Q 036662          148 GMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQT  220 (316)
Q Consensus       148 g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~  220 (316)
                      |+||||+|+..|+.++++       +++.+|..|.||||+|+.    .++.+++++|+++|++.+.....+.++.+.+..
T Consensus       157 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~  232 (253)
T 1yyh_A          157 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR----EGSYETAKVLLDHFANRDITDHMDRLPRDIAQE  232 (253)
T ss_dssp             SCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCccccccCCCCHHHHHHH
Confidence            999999999999999998       899999999999999999    889999999999999999988888888887766


Q ss_pred             Ccccccc
Q 036662          221 NSLTSHG  227 (316)
Q Consensus       221 ~~~~~~~  227 (316)
                      +.....+
T Consensus       233 ~g~~~i~  239 (253)
T 1yyh_A          233 RMHHDIV  239 (253)
T ss_dssp             TTCHHHH
T ss_pred             cCCHHHH
Confidence            6555444

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=4.4e-38  Score=266.50  Aligned_cols=203  Identities=19%  Similarity=0.168  Sum_probs=189.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      ++||||.|+..|+.+++++|++++.++   +..+..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus        11 g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   86 (237)
T 3b7b_A           11 KRSPLHAAAEAGHVDICHMLVQAGANI---DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHLAAK   86 (237)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHHHHH
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCc---CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHH
Confidence            479999999999999999999999887   445889999999999999999999999999998 8899999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ  160 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  160 (316)
                      .|+.++       +++|++..+.+++..|..|+||||+|+..|+.+++++|++.|++   ++.+|.+|+||||+|+..|+
T Consensus        87 ~~~~~~-------~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~  156 (237)
T 3b7b_A           87 KGHYEV-------VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD---INIRDNEENICLHWAAFSGC  156 (237)
T ss_dssp             TTCHHH-------HHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHCC
T ss_pred             cCCHHH-------HHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCccCCCCCCHHHHHHHCCC
Confidence            999988       99999966689999999999999999999999999999999999   99999999999999999999


Q ss_pred             cceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCccccccccccC
Q 036662          161 IEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTN  221 (316)
Q Consensus       161 ~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~  221 (316)
                      .++++       +++.+|..|.||||+|+.    .++.+++++|+++|++.+.....+.+|.......
T Consensus       157 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  220 (237)
T 3b7b_A          157 VDIAEILLAAKCDLHAVNIHGDSPLHIAAR----ENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLN  220 (237)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTT
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHH----hCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHH
Confidence            99998       889999999999999999    8999999999999999998888888887665443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=9.9e-38  Score=263.29  Aligned_cols=201  Identities=21%  Similarity=0.238  Sum_probs=188.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      ++|||.|++.|+.+.++.|++.++...  +.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..
T Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   83 (231)
T 3aji_A            7 NIMICNLAYSGKLDELKERILADKSLA--TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA   83 (231)
T ss_dssp             SSHHHHHHHHTCHHHHHHHHHHCGGGG--GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHH
T ss_pred             cchHHHHHHhCCHHHHHHHHHhchhhh--hcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHHHHc
Confidence            689999999999999999999987643  346889999999999999999999999999998 88999999999999999


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCc
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQI  161 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  161 (316)
                      |+.++       +++|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|++   ++.+|..|+||||+|+..|+.
T Consensus        84 ~~~~~-------v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~  152 (231)
T 3aji_A           84 GXDEI-------VKALLV-KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN---PDAKDHYDATAMHRAAAKGNL  152 (231)
T ss_dssp             TCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCH
T ss_pred             CHHHH-------HHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHcCCH
Confidence            99988       999999 8889999999999999999999999999999999999   999999999999999999999


Q ss_pred             ceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCcccccccccc
Q 036662          162 EYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQT  220 (316)
Q Consensus       162 ~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~  220 (316)
                      ++++       +++.+|..|.||||+|+.    .++.+++++|+++|++.+.....+.+|...+..
T Consensus       153 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  214 (231)
T 3aji_A          153 KMVHILLFYKASTNIQDTEGNTPLHLACD----EERVEEAKFLVTQGASIYIENKEEKTPLQVAKG  214 (231)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCH
T ss_pred             HHHHHHHhcCCCccccCCCCCCHHHHHHH----CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence            9998       889999999999999999    899999999999999999888888888766543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.9e-37  Score=260.19  Aligned_cols=189  Identities=19%  Similarity=0.165  Sum_probs=177.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      ++||||.|+..|+.+++++|++++.++   +.+|..|.||||+|+..|+.+++++|+++++...+..|..|.||||+|+.
T Consensus        25 g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  101 (223)
T 2f8y_A           25 GETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  101 (223)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHH
T ss_pred             CCchHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHH
Confidence            479999999999999999999999887   44589999999999999999999999999985458899999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ  160 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  160 (316)
                      .|+.++       +++|++ .+.+++..|..|+||||+|+..|+.+++++|+++|++   ++.+|..|+||||+|+..|+
T Consensus       102 ~~~~~~-------~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~  170 (223)
T 2f8y_A          102 LAVEGM-------LEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQNNREETPLFLAAREGS  170 (223)
T ss_dssp             HTCHHH-------HHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHTC
T ss_pred             hCcHHH-------HHHHHH-cCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCcCHHHHHHHcCC
Confidence            999988       999999 8889999999999999999999999999999999999   99999999999999999999


Q ss_pred             cceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccc
Q 036662          161 IEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKE  207 (316)
Q Consensus       161 ~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~  207 (316)
                      .++++       +++.+|..|.||+++|+.    .++.+++++|+++|+...++
T Consensus       171 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~----~~~~~i~~~L~~~g~~~~~~  220 (223)
T 2f8y_A          171 YETAKVLLDHFANRDITDHMDRLPRDIAQE----RMHHDIVRLLDEYNLVRSPQ  220 (223)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCSSCC-
T ss_pred             HHHHHHHHHcCCCCccccccCCCHHHHHHH----hcchHHHHHHHHcCCCcccc
Confidence            99998       889999999999999999    89999999999999987654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=8.5e-38  Score=265.12  Aligned_cols=204  Identities=22%  Similarity=0.238  Sum_probs=186.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHH----cChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQ----KDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALH   76 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh   76 (316)
                      ++||||.|++.|+.+++++|++    .+.++   +.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus         9 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~   84 (241)
T 1k1a_A            9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGREL---DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAH   84 (241)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC---CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHH
Confidence            4799999999999999999997    56555   445889999999999999999999999999998 888999999999


Q ss_pred             HHHHcCCcccccccHHHHHHHHHhCC---CCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccccc-CCCCcHH
Q 036662           77 IASQKRYVGMKSNRIDVLEELVRARP---LAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKD-DYGMSIL  152 (316)
Q Consensus        77 ~A~~~g~~~~~~~~~~iv~~Ll~~~~---~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d-~~g~t~L  152 (316)
                      +|+..|+.++       +++|++..+   .+++..|..|+||||+|+..|+.+++++|++.|++   ++.+| ..|+|||
T Consensus        85 ~A~~~~~~~~-------~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~~g~t~L  154 (241)
T 1k1a_A           85 LACEHRSPTC-------LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD---IDAVDIKSGRSPL  154 (241)
T ss_dssp             HHHHTTCHHH-------HHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTTCCCHH
T ss_pred             HHHHcCCHHH-------HHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC---cccccccCCCcHH
Confidence            9999999988       999999543   27788899999999999999999999999999999   89888 8999999


Q ss_pred             HHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCccccccccccCc
Q 036662          153 HLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNS  222 (316)
Q Consensus       153 h~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  222 (316)
                      |+|+..|+.++++       +++.+|..|.||||+|+.    .++.+++++|+++|++++.....+.+|...+..+.
T Consensus       155 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~  227 (241)
T 1k1a_A          155 IHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG----RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR  227 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHH----HTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcC
Confidence            9999999999998       899999999999999999    88999999999999999988888888887665543

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.1e-37  Score=268.40  Aligned_cols=198  Identities=16%  Similarity=0.143  Sum_probs=184.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      +.||||.|+..|+.++|+.|++.+.++   +.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus        59 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~  134 (285)
T 3d9h_A           59 DWSPMHEAAIHGHQLSLRNLISQGWAV---NIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACV  134 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCS---CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHH
Confidence            469999999999999999999999887   445899999999999999999999999999998 8999999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ  160 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  160 (316)
                      .|+.++       +++|++ .+.+++. +.+|+||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..|+
T Consensus       135 ~~~~~~-------v~~Ll~-~g~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~  202 (285)
T 3d9h_A          135 SGSWDC-------VNLLLQ-HGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGN---IDHKISHLGTPLYLACENQQ  202 (285)
T ss_dssp             HTCHHH-------HHHHHH-TTCCSSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCC---TTCCBTTTBCHHHHHHHTTC
T ss_pred             cCHHHH-------HHHHHH-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHcCc
Confidence            999988       999999 7777765 45699999999999999999999999999   99999999999999999999


Q ss_pred             cceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCccccccccc
Q 036662          161 IEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQ  219 (316)
Q Consensus       161 ~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~  219 (316)
                      .++++       +++ .|..|.||||+|+.    .++.+++++|+++|++.+.....+.++..+..
T Consensus       203 ~~~v~~Ll~~ga~~~-~~~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~  263 (285)
T 3d9h_A          203 RACVKKLLESGADVN-QGKGQDSPLHAVVR----TASEELACLLMDFGADTQAKNAEGKRPVELVP  263 (285)
T ss_dssp             HHHHHHHHHTTCCTT-CCBTTBCHHHHHHH----TTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC
T ss_pred             HHHHHHHHHCCCCCC-CCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc
Confidence            99998       666 48899999999999    89999999999999999999998999887665

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.7e-37  Score=266.39  Aligned_cols=202  Identities=21%  Similarity=0.160  Sum_probs=161.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcChhhHH-----hhhcCCCCCCHHHHHHhcCCH-HHHHHHHhhCCCcccccCCCCCcHHH
Q 036662            3 SKLYEAALAGSVTSLLEFLQKDRLILE-----RAAMNCPSETPLHVAALLRHK-DFAKEILRQKPGIAGELDSRKSSALH   76 (316)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~-----~~~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~~~~~~~d~~g~tpLh   76 (316)
                      ++|+.||+.|+.++|+.||+.+++...     .+..+..|.||||.|+..++. ++++.|++.|+++ +.+|.+|+||||
T Consensus        13 ~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G~TpLh   91 (269)
T 4b93_B           13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDGSSPLH   91 (269)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCTTSCCHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCCCCHHH
Confidence            799999999999999999998875321     133577899999999998875 5889999999998 999999999999


Q ss_pred             HHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 036662           77 IASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV  156 (316)
Q Consensus        77 ~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~  156 (316)
                      +|+..|+.++       +++|++ .+++++..+.+|.||+|+|+..++.+++++|++.|++   +|.+|.+|+||||+|+
T Consensus        92 ~A~~~g~~~~-------v~~Ll~-~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~---~n~~d~~g~TpL~~A~  160 (269)
T 4b93_B           92 VAALHGRADL-------IPLLLK-HGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK---PNKKDLSGNTPLIYAC  160 (269)
T ss_dssp             HHHHTTCTTH-------HHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTCCCHHHHHH
T ss_pred             HHHHcCcHHH-------HHHHHh-cCCCcCccCCCCCCccccccccChHHHHHHHHHCCCC---CCCCCCCCCCHHHHHH
Confidence            9999999999       999999 8899999999999999999999999999999999999   9999999999999999


Q ss_pred             hcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCcccccccccc
Q 036662          157 ADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQT  220 (316)
Q Consensus       157 ~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~  220 (316)
                      ..|+.++++       ++|.+|..|.||||+|+.    .++.+++++|+++|++++.....+.+|+.++..
T Consensus       161 ~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~----~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  227 (269)
T 4b93_B          161 SGGHHELVALLLQHGASINASNNKGNTALHEAVI----EKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ  227 (269)
T ss_dssp             HTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCT
T ss_pred             HCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHH----cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHh
Confidence            999999998       899999999999999999    899999999999999999999999999887754

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=6.6e-37  Score=252.77  Aligned_cols=182  Identities=20%  Similarity=0.245  Sum_probs=171.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCh-hhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDR-LILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      .||||.|+..|+.+.++.|++++. ++   +..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~   81 (201)
T 3hra_A            6 VGALLEAANQRDTKKVKEILQDTTYQV---DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAGA   81 (201)
T ss_dssp             TTHHHHHHHTTCHHHHHHHHTCTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             ccHHHHHHHhccHHHHHHHHHcCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence            589999999999999999999887 55   445889999999999999999999999999998 8899999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcC-CCccccccccCCCCcHHHHHHhcC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENT-DDSEFLNAKDDYGMSILHLAVADK  159 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~d~~g~t~Lh~A~~~~  159 (316)
                      .|+.++       +++|++..+.+++..|..|+||||+|+..|+.+++++|+++| ++   ++.+|.+|+||||+|+..+
T Consensus        82 ~~~~~~-------~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~~g~t~L~~A~~~~  151 (201)
T 3hra_A           82 QGRTEI-------LAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED---IDFQNDFGYTALIEAVGLR  151 (201)
T ss_dssp             TTCHHH-------HHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC---TTCCCTTSCCHHHHHHHSS
T ss_pred             cCCHHH-------HHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---cCCCCCCCCCHHHHHHHhc
Confidence            999988       999997789899999999999999999999999999999999 78   9999999999999999998


Q ss_pred             C-----cceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhC
Q 036662          160 Q-----IEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAG  201 (316)
Q Consensus       160 ~-----~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~g  201 (316)
                      +     .++++       +++.+|..|+||||+|+.    .++.+++++|+++|
T Consensus       152 ~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          152 EGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQ----KGYTEISKILAQYN  201 (201)
T ss_dssp             CCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHTCC
T ss_pred             cchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHH----cCCHhHHHHHHhcC
Confidence            8     77777       899999999999999999    89999999999987

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=3.7e-37  Score=259.75  Aligned_cols=184  Identities=19%  Similarity=0.171  Sum_probs=174.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      ++||||.|+..|+.+++++|++.+.++   +.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus        40 g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~  115 (231)
T 3aji_A           40 SRTALHWACSAGHTEIVEFLLQLGVPV---NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAAS  115 (231)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHhCCCC---CCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence            479999999999999999999999877   445889999999999999999999999999998 8899999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ  160 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  160 (316)
                      .|+.++       +++|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..++
T Consensus       116 ~~~~~~-------~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~  184 (231)
T 3aji_A          116 KNRHEI-------AVMLLE-GGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS---TNIQDTEGNTPLHLACDEER  184 (231)
T ss_dssp             TTCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTC
T ss_pred             cCCHHH-------HHHHHH-cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---ccccCCCCCCHHHHHHHCCC
Confidence            999988       999999 8899999999999999999999999999999999999   99999999999999999999


Q ss_pred             cceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCC
Q 036662          161 IEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAI  203 (316)
Q Consensus       161 ~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~  203 (316)
                      .++++       +++.+|..|.||||+|..    .++.+++++|.++|++
T Consensus       185 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~----~~~~~i~~lL~~~~a~  230 (231)
T 3aji_A          185 VEEAKFLVTQGASIYIENKEEKTPLQVAKG----GLGLILKRLAEGEEAS  230 (231)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHSCH----HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHh----hHHHHHHHHHcccccc
Confidence            99998       899999999999999998    7899999999999876

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.1e-36  Score=262.27  Aligned_cols=202  Identities=18%  Similarity=0.088  Sum_probs=143.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      .||||.|+..|+.+++++|++++.++   +.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..
T Consensus        40 ~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~  115 (285)
T 1wdy_A           40 WTPLHNAVQMSREDIVELLLRHGADP---VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVY  115 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHT
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHh
Confidence            46777777777777777777776655   233666777777777777777777777777776 66677777777777777


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccc----------cCCCCcHHHHHHhcCCHHHHHHHHhc-CCCccccccccCCCCc
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAP----------LIWVETILHLCVKHNQLEALKVLLEN-TDDSEFLNAKDDYGMS  150 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~----------d~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~d~~g~t  150 (316)
                      |+.++       +++|++ .+.+++..          +..|.||||+|+..|+.+++++|++. |++   ++.+|..|+|
T Consensus       116 ~~~~~-------~~~Ll~-~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~~g~t  184 (285)
T 1wdy_A          116 GKVKA-------LKFLYK-RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD---VNACDNMGRN  184 (285)
T ss_dssp             TCHHH-------HHHHHH-TTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC---TTCCCTTSCC
T ss_pred             CCHHH-------HHHHHH-hCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC---CCccCCCCCC
Confidence            66666       777777 66666555          66677778877777777777777776 777   7777777777


Q ss_pred             HHHHHHhcCC----cceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHH-hCCCcccccCCcccccccc
Q 036662          151 ILHLAVADKQ----IEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRR-AGAISAKEMQQPATKVSIT  218 (316)
Q Consensus       151 ~Lh~A~~~~~----~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~-~ga~~~~~~~~~~~~~~~~  218 (316)
                      |||+|+..++    .++++       +++.+|..|.||||+|+.    .++.+++++|++ .|++.+.....+.++...+
T Consensus       185 ~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A  260 (285)
T 1wdy_A          185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE----KKHLGLVQRLLEQEHIEINDTDSDGKTALLLA  260 (285)
T ss_dssp             HHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH----TTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH----cCCHHHHHHHHhccCCCccccCCCCCcHHHHH
Confidence            7777777777    44544       677777777777777777    677777777777 7777777777777776655


Q ss_pred             ccCc
Q 036662          219 QTNS  222 (316)
Q Consensus       219 ~~~~  222 (316)
                      ....
T Consensus       261 ~~~~  264 (285)
T 1wdy_A          261 VELK  264 (285)
T ss_dssp             HHTT
T ss_pred             HHcC
Confidence            4443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.3e-36  Score=260.54  Aligned_cols=186  Identities=19%  Similarity=0.151  Sum_probs=172.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      +.||||+|+..|+.++|+.|+++++++   +.+|..|.||||+|+..|+.+++++|+++++...+.+|..|.||||+|+.
T Consensus        57 g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~  133 (253)
T 1yyh_A           57 GETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR  133 (253)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHH
Confidence            479999999999999999999999887   44589999999999999999999999999984448999999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ  160 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  160 (316)
                      .|+.++       +++|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|++   ++.+|..|+||||+|+..|+
T Consensus       134 ~~~~~~-------v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpL~~A~~~~~  202 (253)
T 1yyh_A          134 LAVEGM-------LEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQNNREETPLFLAAREGS  202 (253)
T ss_dssp             HTCSSH-------HHHHHH-TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTC
T ss_pred             cChHHH-------HHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHCCC
Confidence            999999       999999 8999999999999999999999999999999999999   99999999999999999999


Q ss_pred             cceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCc
Q 036662          161 IEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAIS  204 (316)
Q Consensus       161 ~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~  204 (316)
                      .++++       +++.+|..|+||+|+|+.    .++.+++++|......+
T Consensus       203 ~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~----~g~~~i~~~l~~~~~~~  249 (253)
T 1yyh_A          203 YETAKVLLDHFANRDITDHMDRLPRDIAQE----RMHHDIVRLLDLEHHHH  249 (253)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHC-----
T ss_pred             HHHHHHHHHcCCCccccccCCCCHHHHHHH----cCCHHHHHHHHHHhhhc
Confidence            99998       899999999999999999    89999999998655443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.7e-36  Score=270.44  Aligned_cols=195  Identities=22%  Similarity=0.187  Sum_probs=159.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcC-CCCCCHHHHHHhcCCHHHHHHHHhhCCCc-----------------
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMN-CPSETPLHVAALLRHKDFAKEILRQKPGI-----------------   63 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-----------------   63 (316)
                      +|+||.|++.|++++|+.||++|++++.   ++ ..|+||||+|+..|+.++|++||++|+++                 
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~---~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  102 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEGGANVNF---QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIA  102 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHTCCTTC---CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCCc---cCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence            5899999999999999999999998743   34 45899999999999999999999998764                 


Q ss_pred             ---------------ccccCCCCCcHHHHHHHcCCccc------------------------------------ccccHH
Q 036662           64 ---------------AGELDSRKSSALHIASQKRYVGM------------------------------------KSNRID   92 (316)
Q Consensus        64 ---------------~~~~d~~g~tpLh~A~~~g~~~~------------------------------------~~~~~~   92 (316)
                                     .+..|..|.||||+|+..|+.++                                    ..|+.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~  182 (337)
T 4g8k_A          103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  182 (337)
T ss_dssp             TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHH
T ss_pred             ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHH
Confidence                           14467778888888888887766                                    345566


Q ss_pred             HHHHHHHhCCCCcccccCCCCcHHHHHHhcCC----HHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec---
Q 036662           93 VLEELVRARPLAASAPLIWVETILHLCVKHNQ----LEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN---  165 (316)
Q Consensus        93 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~----~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~---  165 (316)
                      ++++||++.+++++.+|..|+|+||.++..++    .+++++|+++|++   +|.+|.+|+||||+|+..|+.++++   
T Consensus       183 ~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad---~n~~d~~g~t~L~~a~~~~~~~~v~~Ll  259 (337)
T 4g8k_A          183 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEKKHLGLVQRLL  259 (337)
T ss_dssp             HHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC---TTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhhhhHHHHHHH
Confidence            67777765677777777777777776665433    3566777777777   8889999999999999999998887   


Q ss_pred             -----ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCccc
Q 036662          166 -----QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAK  206 (316)
Q Consensus       166 -----~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~  206 (316)
                           +++.+|.+|+||||+|+.    .++.+++++|+++||+++.
T Consensus       260 ~~~~~~vn~~d~~G~TpL~~A~~----~g~~~iv~~Ll~~GAd~n~  301 (337)
T 4g8k_A          260 EQEHIEINDTDSDGKTALLLAVE----LKLKKIAELLCKRGASTDC  301 (337)
T ss_dssp             TSTTCCTTCBCTTSCBHHHHHHH----TTCHHHHHHHHTTSCSSTT
T ss_pred             HhcCCcccCcCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence                 789999999999999999    8999999999999998864

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.6e-36  Score=269.50  Aligned_cols=199  Identities=21%  Similarity=0.159  Sum_probs=181.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      ++||||+|+..|+.++|++|+++|+++   +.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+.
T Consensus        58 g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~  133 (351)
T 3utm_A           58 KSTPLHLAAGYNRVRIVQLLLQHGADV---HAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAAS  133 (351)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHH
Confidence            469999999999999999999999887   445889999999999999999999999999998 8899999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccc----------------------------------------------------
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAP----------------------------------------------------  108 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~----------------------------------------------------  108 (316)
                      .|+.++       +++|++ .+.+++..                                                    
T Consensus       134 ~~~~~~-------v~~Ll~-~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  205 (351)
T 3utm_A          134 KNRVEV-------CSLLLS-HGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF  205 (351)
T ss_dssp             TTCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTC
T ss_pred             cCCHHH-------HHHHHH-cCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccc
Confidence            999888       999999 66665543                                                    


Q ss_pred             --cCCCCcHHHHHHhc---CCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCC
Q 036662          109 --LIWVETILHLCVKH---NQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFT  176 (316)
Q Consensus       109 --d~~g~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~T  176 (316)
                        +..|+||||+|+..   ++.+++++|++.|++   +|.+|.+|+||||+|+..|+.++++       +++.+|..|+|
T Consensus       206 ~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t  282 (351)
T 3utm_A          206 KQPQSHETALHCAVASLHPKRKQVAELLLRKGAN---VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQT  282 (351)
T ss_dssp             CCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC---cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCC
Confidence              35678999999999   558999999999999   9999999999999999999999999       89999999999


Q ss_pred             HHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCcccccccc
Q 036662          177 AWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSIT  218 (316)
Q Consensus       177 pL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~  218 (316)
                      |||+|+.    .++.+++++|+++|++++.....+.++.+..
T Consensus       283 ~L~~A~~----~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a  320 (351)
T 3utm_A          283 ALHRAAL----AGHLQTCRLLLSYGSDPSIISLQGFTAAQMG  320 (351)
T ss_dssp             HHHHHHH----HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS
T ss_pred             HHHHHHH----cCcHHHHHHHHHcCCCCCCcCCCCCChhhhh
Confidence            9999999    8999999999999999998888888877654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=8.7e-38  Score=264.82  Aligned_cols=192  Identities=20%  Similarity=0.188  Sum_probs=171.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhh-HHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLI-LERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIAS   79 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~   79 (316)
                      ++||||.|+..|+.++++.|++.+... ...+.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+
T Consensus         8 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~   86 (236)
T 1ikn_D            8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLHLAC   86 (236)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHHHHH
T ss_pred             CCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence            579999999999999999999987631 012456889999999999999999999999999998 889999999999999


Q ss_pred             HcCCcccccccHHHHHHHHHhCC-----CCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccC-CCCcHHH
Q 036662           80 QKRYVGMKSNRIDVLEELVRARP-----LAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDD-YGMSILH  153 (316)
Q Consensus        80 ~~g~~~~~~~~~~iv~~Ll~~~~-----~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~-~g~t~Lh  153 (316)
                      ..|+.++       +++|++...     ..++..|..|+||||+|+.+|+.+++++|+++|++   ++.+|. .|+||||
T Consensus        87 ~~~~~~~-------v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~g~tpL~  156 (236)
T 1ikn_D           87 EQGCLAS-------VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRTALH  156 (236)
T ss_dssp             HHTCHHH-------HHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCHHH
T ss_pred             HcCCHHH-------HHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCCHHH
Confidence            9999988       999999432     23677889999999999999999999999999999   999998 9999999


Q ss_pred             HHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccc
Q 036662          154 LAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKE  207 (316)
Q Consensus       154 ~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~  207 (316)
                      +|+..|+.++++       +++.+|..|.||||+|+.    .++.+++++|+++|++....
T Consensus       157 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~----~~~~~~~~~Ll~~ga~~~~~  213 (236)
T 1ikn_D          157 LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWG----RPSTRIQQQLGQLTLENLQM  213 (236)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTT----SSCHHHHHHHHTTSCGGGSS
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHc----cCchHHHHHHHHcchhhhhc
Confidence            999999999998       899999999999999999    89999999999999988743

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=5.7e-36  Score=240.83  Aligned_cols=160  Identities=24%  Similarity=0.302  Sum_probs=137.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      .++|+.||+.|+.++|+.||++|+++   +.+|..|+||||+|+..|+.++++.|+++|+++ +.+|..|+||||+|+..
T Consensus         5 g~~L~~Aa~~G~~~~v~~Ll~~Gadv---n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~   80 (169)
T 4gpm_A            5 GKRLIEAAENGNKDRVKDLIENGADV---NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAEN   80 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHc
Confidence            35799999999999999999999887   455899999999999999999999999999998 88999999999999999


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCc
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQI  161 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  161 (316)
                      |+.++       +++|++ .+++++.+|.+|+||||+|+.+|+.+++++|+++|++   ++.+|.+|+||||+|+.    
T Consensus        81 g~~~~-------v~~Ll~-~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~----  145 (169)
T 4gpm_A           81 GHKEV-------VKLLIS-KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNTSDSDGRTPLDLARE----  145 (169)
T ss_dssp             TCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHH----
T ss_pred             CCHHH-------HHHHHH-CcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHH----
Confidence            99888       999999 8899999999999999999999999999999999998   77777776666666665    


Q ss_pred             ceecccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCccc
Q 036662          162 EYYNQSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAK  206 (316)
Q Consensus       162 ~~v~~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~  206 (316)
                                                .++.+++++|+++||+...
T Consensus       146 --------------------------~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          146 --------------------------HGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             --------------------------TTCHHHHHHHHTC------
T ss_pred             --------------------------cCCHHHHHHHHHCCCCcCC
Confidence                                      4567789999999998743

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=3.3e-37  Score=264.41  Aligned_cols=192  Identities=22%  Similarity=0.206  Sum_probs=169.5

Q ss_pred             CCcHHHHHHHcCCHH----HHHHHHHcChhhHHhh-hcCCCCCCHHHHHHhc---CCHHHHHHHHhhCCCccc-------
Q 036662            1 MESKLYEAALAGSVT----SLLEFLQKDRLILERA-AMNCPSETPLHVAALL---RHKDFAKEILRQKPGIAG-------   65 (316)
Q Consensus         1 m~t~L~~A~~~g~~~----~v~~Ll~~~~~~~~~~-~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~-------   65 (316)
                      ++||||.|++.|+.+    ++++|++.+.+++... .+|..|+||||+|+..   |+.+++++|+++|+++..       
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            479999999999997    5566777888774310 1488999999999999   999999999999987621       


Q ss_pred             ---ccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCC-------------CCcHHHHHHhcCCHHHHH
Q 036662           66 ---ELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIW-------------VETILHLCVKHNQLEALK  129 (316)
Q Consensus        66 ---~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~-------------g~t~Lh~A~~~g~~~~v~  129 (316)
                         .+|..|.||||+|+..|+.++       +++|++ .+.+++.+|..             |+||||+|+..|+.++++
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~-------v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~  153 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQC-------VKLLVE-NGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVT  153 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHH-------HHHHHH-TTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHH
T ss_pred             ccccccccCCCHHHHHHHcCCHHH-------HHHHHH-cCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence               234789999999999999988       999999 78899988876             999999999999999999


Q ss_pred             HHHh---cCCCccccccccCCCCcHHHHHHh--cCCcc-------eec-------cc-------ccccCCCCCHHHHHHh
Q 036662          130 VLLE---NTDDSEFLNAKDDYGMSILHLAVA--DKQIE-------YYN-------QS-------ECCYANGFTAWDILAN  183 (316)
Q Consensus       130 ~Ll~---~g~~~~~~~~~d~~g~t~Lh~A~~--~~~~~-------~v~-------~~-------~~~~~~g~TpL~~a~~  183 (316)
                      +|++   .|++   +|.+|.+|+||||+|+.  .++.+       +++       ++       +.+|..|+||||+|+.
T Consensus       154 ~Ll~~~~~ga~---~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~  230 (256)
T 2etb_A          154 YLLENPHQPAS---LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAK  230 (256)
T ss_dssp             HHHHCSSCCCC---TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             HHHhccccCCC---cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHH
Confidence            9999   9999   99999999999999999  77777       777       66       8999999999999999


Q ss_pred             ccCCCcHHHHHHHHHHhCCCcccc
Q 036662          184 SKRKMKDWEIGELLRRAGAISAKE  207 (316)
Q Consensus       184 ~~~~~~~~~i~~~Ll~~ga~~~~~  207 (316)
                          .++.+++++|+++|++....
T Consensus       231 ----~g~~~~v~~Ll~~g~~~~~~  250 (256)
T 2etb_A          231 ----EGKIEIFRHILQREFSGAAA  250 (256)
T ss_dssp             ----TTCHHHHHHHHHHHHHHHHH
T ss_pred             ----hCCHHHHHHHHhCCCCCCCc
Confidence                89999999999999987543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-35  Score=273.86  Aligned_cols=211  Identities=21%  Similarity=0.194  Sum_probs=152.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      .||||.|+..|+.+++++|++++.++   +..+..|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..
T Consensus       147 ~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~  222 (437)
T 1n11_A          147 FTPLHVAAKYGKVRVAELLLERDAHP---NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQ  222 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHc
Confidence            35566666666666666666555544   223555555566655555555555555555554 44555555555555555


Q ss_pred             CCccc--------------------------ccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcC
Q 036662           82 RYVGM--------------------------KSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENT  135 (316)
Q Consensus        82 g~~~~--------------------------~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g  135 (316)
                      |+.++                          ..|+.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|+++|
T Consensus       223 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  301 (437)
T 1n11_A          223 NQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG  301 (437)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            55444                          3445555888888 77777778888888888888888888888888888


Q ss_pred             CCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCccccc
Q 036662          136 DDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEM  208 (316)
Q Consensus       136 ~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~  208 (316)
                      ++   ++.+|..|+||||+|+..|+.++++       ++|.+|..|.||||+|+.    .++.+++++|+++|++++...
T Consensus       302 ~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~----~g~~~iv~~Ll~~ga~~~~~~  374 (437)
T 1n11_A          302 VM---VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ----QGHTDIVTLLLKNGASPNEVS  374 (437)
T ss_dssp             CC---TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSCCCC
T ss_pred             cc---CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH----CChHHHHHHHHHCcCCCCCCC
Confidence            88   8888888999999999999888888       788889999999999998    788899999999999998888


Q ss_pred             CCccccccccccCccc
Q 036662          209 QQPATKVSITQTNSLT  224 (316)
Q Consensus       209 ~~~~~~~~~~~~~~~~  224 (316)
                      ..+.++.+++......
T Consensus       375 ~~g~t~l~~A~~~g~~  390 (437)
T 1n11_A          375 SDGTTPLAIAKRLGYI  390 (437)
T ss_dssp             SSSCCHHHHHHHTTCH
T ss_pred             CCCCCHHHHHHHcCcH
Confidence            8888888766555443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=4.9e-36  Score=262.57  Aligned_cols=203  Identities=19%  Similarity=0.150  Sum_probs=182.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      +||||.||..|+.++|+.|+++++++   +..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus        41 ~t~l~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~  116 (299)
T 1s70_B           41 GAVFLAACSSGDTEEVLRLLERGADI---NYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASC  116 (299)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHc
Confidence            48999999999999999999999887   445899999999999999999999999999998 88999999999999999


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHh-cCCCcc---------------------
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLE-NTDDSE---------------------  139 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~~---------------------  139 (316)
                      |+.++       +++|++ ++.+++..|..|.||||+|+..++.++++.++. .+.+..                     
T Consensus       117 g~~~~-------v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  188 (299)
T 1s70_B          117 GYLDI-------AEYLIS-QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG  188 (299)
T ss_dssp             TCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHH-------HHHHHh-CCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhcc
Confidence            99988       999999 889999999999999999999999999988775 343310                     


Q ss_pred             --ccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCC
Q 036662          140 --FLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQ  210 (316)
Q Consensus       140 --~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~  210 (316)
                        .....+..|.||||+|+..|+.++++       +++.+|..|.||||+|+.    .++.+++++|+++|++.+.....
T Consensus       189 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~gad~~~~d~~  264 (299)
T 1s70_B          189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH----WGKEEACRILVENLCDMEAVNKV  264 (299)
T ss_dssp             CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHh----cCCHHHHHHHHHcCCCCCCcCCC
Confidence              02235678999999999999999998       899999999999999999    89999999999999999988888


Q ss_pred             cccccccccc
Q 036662          211 PATKVSITQT  220 (316)
Q Consensus       211 ~~~~~~~~~~  220 (316)
                      +.+|.+.+..
T Consensus       265 g~t~l~~A~~  274 (299)
T 1s70_B          265 GQTAFDVADE  274 (299)
T ss_dssp             SCCTTTSCCS
T ss_pred             CCCHHHHHHH
Confidence            8888876643

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.1e-36  Score=263.66  Aligned_cols=193  Identities=20%  Similarity=0.213  Sum_probs=164.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHc----ChhhHHhh-hcCCCCCCHHHHHHhc---CCHHHHHHHHhhCCCcc------cc
Q 036662            1 MESKLYEAALAGSVTSLLEFLQK----DRLILERA-AMNCPSETPLHVAALL---RHKDFAKEILRQKPGIA------GE   66 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~-~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~------~~   66 (316)
                      ++||||.|++.|+.++|+.|++.    +.++.... ..|..|.||||+|+..   |+.+++++|+++|+++.      +.
T Consensus        13 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~   92 (273)
T 2pnn_A           13 DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNA   92 (273)
T ss_dssp             CHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTC
T ss_pred             cchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhc
Confidence            46999999999999999999975    33332211 2478999999999987   99999999999987631      22


Q ss_pred             ----cCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccC--------------CCCcHHHHHHhcCCHHHH
Q 036662           67 ----LDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLI--------------WVETILHLCVKHNQLEAL  128 (316)
Q Consensus        67 ----~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~--------------~g~t~Lh~A~~~g~~~~v  128 (316)
                          .|..|.||||+|+..|+.++       +++|++ .+.+++.++.              .|+||||+|+.+|+.+++
T Consensus        93 ~~~~~d~~g~tpL~~A~~~g~~~~-------v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v  164 (273)
T 2pnn_A           93 SYTDSYYKGQTALHIAIERRNMTL-------VTLLVE-NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV  164 (273)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHH-------HHHHHH-TTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHH
T ss_pred             ccccccCCCCCHHHHHHHcCCHHH-------HHHHHH-CCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHH
Confidence                57799999999999999988       999999 7889998887              799999999999999999


Q ss_pred             HHHHh---cCCCccccccccCCCCcHHHHHHhcCC---------cceec-------ccc-------cccCCCCCHHHHHH
Q 036662          129 KVLLE---NTDDSEFLNAKDDYGMSILHLAVADKQ---------IEYYN-------QSE-------CCYANGFTAWDILA  182 (316)
Q Consensus       129 ~~Ll~---~g~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~v~-------~~~-------~~~~~g~TpL~~a~  182 (316)
                      ++|++   .|++   ++.+|.+|+||||+|+..|+         .++++       +++       .+|..|+||||+|+
T Consensus       165 ~~Ll~~~~~gad---~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~  241 (273)
T 2pnn_A          165 KFLLQNSWQPAD---ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAA  241 (273)
T ss_dssp             HHHHHCSSCCCC---TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             HHHHhcccCCCC---ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHH
Confidence            99999   8999   99999999999999999888         56666       554       58999999999999


Q ss_pred             hccCCCcHHHHHHHHHHhCC-Cccccc
Q 036662          183 NSKRKMKDWEIGELLRRAGA-ISAKEM  208 (316)
Q Consensus       183 ~~~~~~~~~~i~~~Ll~~ga-~~~~~~  208 (316)
                      .    .++.+++++|+++|+ ++....
T Consensus       242 ~----~g~~~iv~~Ll~~ga~dp~~~~  264 (273)
T 2pnn_A          242 S----SGKIGVLAYILQREIHEPECRH  264 (273)
T ss_dssp             H----TTCHHHHHHHHHHHTC------
T ss_pred             H----hChHHHHHHHHHCCCCCchhhh
Confidence            9    899999999999999 554433

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=5.1e-36  Score=270.03  Aligned_cols=204  Identities=17%  Similarity=0.104  Sum_probs=182.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      .||||+|+..|+.++|++|++++.++   +.+|..|.||||+|+..|+.++|++|+++|++.   .+.+|.||||+|+..
T Consensus        21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A~~~   94 (364)
T 3ljn_A           21 MEKIHVAARKGQTDEVRRLIETGVSP---TIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLAVMA   94 (364)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHHHHT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCc---cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHHHHc
Confidence            58999999999999999999999887   455899999999999999999999999999965   345899999999999


Q ss_pred             CCcccccccHHHHHHHHHhC---CCCccc-----------------ccCCCCcHHHHHHhcC--CHHHHHHHHhcCCCcc
Q 036662           82 RYVGMKSNRIDVLEELVRAR---PLAASA-----------------PLIWVETILHLCVKHN--QLEALKVLLENTDDSE  139 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~---~~~~~~-----------------~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~g~~~~  139 (316)
                      |+.++       +++|++..   +..++.                 .|..|+||||+|+..|  +.+++++|+++|++  
T Consensus        95 g~~~~-------v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~--  165 (364)
T 3ljn_A           95 NKTDL-------VVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS--  165 (364)
T ss_dssp             TCHHH-------HHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC--
T ss_pred             CCHHH-------HHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC--
Confidence            99988       99999931   566665                 7889999999999999  99999999999999  


Q ss_pred             ccccccCCCCcHHHHHHhcCCcceec-------c-----cccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccc
Q 036662          140 FLNAKDDYGMSILHLAVADKQIEYYN-------Q-----SECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKE  207 (316)
Q Consensus       140 ~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~-----~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~  207 (316)
                       ++.+|.+|+||||+|+..|+.++++       +     ++.+|..|.||||+|+.    .++.+++++|+++|++.+..
T Consensus       166 -~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~gad~~~~  240 (364)
T 3ljn_A          166 -PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAIL----INWEDVAMRFVEMGIDVNME  240 (364)
T ss_dssp             -TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHT----TTCHHHHHHHHTTTCCTTCC
T ss_pred             -CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHH----cCCHHHHHHHHHcCCCCCCC
Confidence             9999999999999999999999998       4     88999999999999999    89999999999999999988


Q ss_pred             cCCccccccccccCcccc
Q 036662          208 MQQPATKVSITQTNSLTS  225 (316)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~  225 (316)
                      ...+.+++..+.......
T Consensus       241 d~~g~tpL~~A~~~g~~~  258 (364)
T 3ljn_A          241 DNEHTVPLYLSVRAAMVL  258 (364)
T ss_dssp             CTTSCCHHHHHHHTCCHH
T ss_pred             CCCCCCHHHHHHHhChHH
Confidence            888888887665554433

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=3.2e-36  Score=262.70  Aligned_cols=185  Identities=17%  Similarity=0.112  Sum_probs=171.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      ++||||+|+..|+.++|+.|+++++++..     .+|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+.
T Consensus        31 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-----~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~  104 (285)
T 3kea_A           31 GHSASYYAIADNNVRLVCTLLNAGALKNL-----LENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGNTALYYAVD  104 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTGGGSC-----CTTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCC-----CCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCcHHHHHHH
Confidence            47999999999999999999999997732     25999999999999999999999999998 8899999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCC-CcHHHHHHhcCCHHHHHHHHhcCCCccccccccC-CCCcHHHHHHhc
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWV-ETILHLCVKHNQLEALKVLLENTDDSEFLNAKDD-YGMSILHLAVAD  158 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g-~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~-~g~t~Lh~A~~~  158 (316)
                      .|+.++       +++|++ .+.+++.+|..| .||||+|+..|+.+++++|+++|++   .  .|. .|+||||+|+..
T Consensus       105 ~g~~~~-------v~~Ll~-~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~---~--~~~~~g~t~L~~A~~~  171 (285)
T 3kea_A          105 SGNMQT-------VKLFVK-KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS---T--FDLAILLSCIHITIKN  171 (285)
T ss_dssp             TTCHHH-------HHHHHH-HCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT---T--CCCSTHHHHHHHHHHT
T ss_pred             cCCHHH-------HHHHHh-cCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc---c--ccccCCccHHHHHHHc
Confidence            999988       999999 689999999999 7999999999999999999999987   3  333 899999999999


Q ss_pred             CCcceec-------ccccccCCCCCH-HHHHHhccCCCcHHHHHHHHHHhCCCccccc
Q 036662          159 KQIEYYN-------QSECCYANGFTA-WDILANSKRKMKDWEIGELLRRAGAISAKEM  208 (316)
Q Consensus       159 ~~~~~v~-------~~~~~~~~g~Tp-L~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~  208 (316)
                      |+.++++       +++.+|..|+|| ||+|+.    .++.+++++|+++|++++...
T Consensus       172 g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~----~~~~~~v~~Ll~~gad~~~~~  225 (285)
T 3kea_A          172 GHVDMMILLLDYMTSTNTNNSLLFIPDIKLAID----NKDIEMLQALFKYDINIYSAN  225 (285)
T ss_dssp             TCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHH----HTCHHHHHHHTTSCBCSTTTT
T ss_pred             ChHHHHHHHHHcCCCCCcccCCCCChHHHHHHH----cCCHHHHHHHHHcCCCCCCCC
Confidence            9999999       899999999998 999999    889999999999999997665

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=4.7e-35  Score=247.56  Aligned_cols=203  Identities=16%  Similarity=0.115  Sum_probs=184.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      +|+||.|+..|+.+++++|++.+.++   +.++..|.||||+|+..|+.+++++|+++|+++....+..|.||||+|+..
T Consensus        10 ~~~l~~A~~~g~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~   86 (240)
T 3eu9_A           10 TWDIVKATQYGIYERCRELVEAGYDV---RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ   86 (240)
T ss_dssp             GCCHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH
T ss_pred             chHHHHHHHcCChHHHHHHHHcCCCc---CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc
Confidence            58999999999999999999999887   445889999999999999999999999999998666777799999999999


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC-
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ-  160 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~-  160 (316)
                      |+.++       +++|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|++   ++.+|.+|.||||+|+..++ 
T Consensus        87 ~~~~~-------v~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~---~~~~~~~g~t~l~~a~~~~~~  155 (240)
T 3eu9_A           87 GHLSM-------VVQLMK-YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD---VDMMDQNGMTPLMWAAYRTHS  155 (240)
T ss_dssp             TCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHCCS
T ss_pred             CCHHH-------HHHHHH-cCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC---ccccCCCCCcHHHHHHHhCCh
Confidence            99988       999999 8899999999999999999999999999999999999   99999999999999997776 


Q ss_pred             cceec-------ccccccC-CCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCccccccccccCc
Q 036662          161 IEYYN-------QSECCYA-NGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNS  222 (316)
Q Consensus       161 ~~~v~-------~~~~~~~-~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  222 (316)
                      .++++       +++..+. .|.||||+|+.    .++.+++++|+++|++.+.....+.++...+...+
T Consensus       156 ~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  221 (240)
T 3eu9_A          156 VDPTRLLLTFNVSVNLGDKYHKNTALHWAVL----AGNTTVISLLLEAGANVDAQNIKGESALDLAKQRK  221 (240)
T ss_dssp             STTHHHHHHTTCCTTCCCTTTCCCHHHHHHH----HTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCcchhhccCCCcHHHHHHH----cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            56655       7888887 99999999999    88999999999999999988888888876655443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=8e-36  Score=252.92  Aligned_cols=183  Identities=17%  Similarity=0.120  Sum_probs=167.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCC----CcccccCCCCCcHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKP----GIAGELDSRKSSALH   76 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~----~~~~~~d~~g~tpLh   76 (316)
                      +.||||+|+..|+.+++++|++.+.++   +.+|..|.||||+|+..|+.+++++|+++++    ++ +..|..|.||||
T Consensus        46 g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~  121 (241)
T 1k1a_A           46 RQTPLHLAVITTLPSVVRLLVTAGASP---MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALH  121 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCc---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHH
Confidence            469999999999999999999999887   4458899999999999999999999999998    66 888999999999


Q ss_pred             HHHHcCCcccccccHHHHHHHHHhCCCCccccc-CCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 036662           77 IASQKRYVGMKSNRIDVLEELVRARPLAASAPL-IWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA  155 (316)
Q Consensus        77 ~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A  155 (316)
                      +|+..|+.++       +++|++ .+.+++..+ ..|+||||+|+.+|+.+++++|+++|++   ++.+|.+|+||||+|
T Consensus       122 ~A~~~~~~~~-------~~~Ll~-~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A  190 (241)
T 1k1a_A          122 VAVNTECQET-------VQLLLE-RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN---VNAQMYSGSSALHSA  190 (241)
T ss_dssp             HHHHHTCHHH-------HHHHHH-TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHH
T ss_pred             HHHHcCCHHH-------HHHHHH-cCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHH
Confidence            9999999988       999999 888888888 8899999999999999999999999999   999999999999999


Q ss_pred             HhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCC
Q 036662          156 VADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGA  202 (316)
Q Consensus       156 ~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga  202 (316)
                      +..|+.++++       +++.+|..|+||||+|+.    .++.++++.|.+.++
T Consensus       191 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~----~~~~~i~~~l~~~~a  240 (241)
T 1k1a_A          191 SGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS----RRVIDILRGKATRPA  240 (241)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSS----HHHHHHHTC------
T ss_pred             HHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHh----cCcHHHHhhhccCCC
Confidence            9999999998       899999999999999999    899999999988765

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=2.2e-36  Score=273.65  Aligned_cols=203  Identities=20%  Similarity=0.194  Sum_probs=181.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHH--------HcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCC
Q 036662            1 MESKLYEAALAGSVTSLLEFL--------QKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKS   72 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~   72 (316)
                      ++||||+|+..|+.++++.|+        +.|.++   +.+|..|.||||+|+..|+.++|++|+++|+++ +.+|..|.
T Consensus       125 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v---n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~  200 (373)
T 2fo1_E          125 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV---NAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSER  200 (373)
T ss_dssp             CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCC
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC---cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCC
Confidence            469999999999998888776        678776   455899999999999999999999999999998 88999999


Q ss_pred             cHHHHHHHcCCcccccccHHHHHHHHHhCC---CCcccccCCCCcHHHHHHhcC---CHHHHHHHHhcCCCcccccc---
Q 036662           73 SALHIASQKRYVGMKSNRIDVLEELVRARP---LAASAPLIWVETILHLCVKHN---QLEALKVLLENTDDSEFLNA---  143 (316)
Q Consensus        73 tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~---~~~~~~d~~g~t~Lh~A~~~g---~~~~v~~Ll~~g~~~~~~~~---  143 (316)
                      ||||+|+..|+.++       +++|++ .+   .+++..|..|+||||+|+..+   +.+++++|+++|++   ++.   
T Consensus       201 t~L~~A~~~g~~~~-------v~~Ll~-~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~---~~~~~~  269 (373)
T 2fo1_E          201 SALHQAAANRDFGM-------MVYMLN-STKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK---VDYDGA  269 (373)
T ss_dssp             CHHHHHHHTTCHHH-------HHHHTT-SHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCC---SSCCSG
T ss_pred             CHHHHHHHCCCHHH-------HHHHHh-cCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCC---cccccc
Confidence            99999999999988       999999 55   678888999999999999998   89999999999998   554   


Q ss_pred             -----ccCCCCcHHHHHHhcCCcceec--------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCC
Q 036662          144 -----KDDYGMSILHLAVADKQIEYYN--------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQ  210 (316)
Q Consensus       144 -----~d~~g~t~Lh~A~~~~~~~~v~--------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~  210 (316)
                           +|..|+||||+|+..|+.++++        +++.+|..|.||||+|+.    .++.+++++|+++|++.+.....
T Consensus       270 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~gad~~~~d~~  345 (373)
T 2fo1_E          270 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ----EGRIEVVMYLIQQGASVEAVDAT  345 (373)
T ss_dssp             GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCSSCCCSS
T ss_pred             cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCccCCCCC
Confidence                 6789999999999999999988        788999999999999999    88999999999999999888888


Q ss_pred             ccccccccccCc
Q 036662          211 PATKVSITQTNS  222 (316)
Q Consensus       211 ~~~~~~~~~~~~  222 (316)
                      +.++...+....
T Consensus       346 g~t~l~~A~~~g  357 (373)
T 2fo1_E          346 DHTARQLAQANN  357 (373)
T ss_dssp             SCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcC
Confidence            888876654443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=5.8e-35  Score=253.14  Aligned_cols=208  Identities=17%  Similarity=0.123  Sum_probs=186.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      +|+||.|++.|+.+++++|+++++++...  .+..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   82 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQ--EEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcccc--cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHc
Confidence            68999999999999999999999877432  2678999999999999999999999999998 88999999999999999


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccc----------cCCCCcH
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAK----------DDYGMSI  151 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~----------d~~g~t~  151 (316)
                      |+.++       +++|++ .+.+++.+|..|+||||+|+..|+.+++++|++.|++   ++.+          +..|.||
T Consensus        83 ~~~~~-------v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~~~~~~~~~~~g~t~  151 (285)
T 1wdy_A           83 GSVKL-------LKLFLS-KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN---VNLRRKTKEDQERLRKGGATA  151 (285)
T ss_dssp             TCHHH-------HHHHHH-TTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCCCCHHHHHTTCCCCCH
T ss_pred             CCHHH-------HHHHHH-cCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCC---cccccccHHHHHhhccCCCcH
Confidence            99988       999999 8899999999999999999999999999999999998   6666          8889999


Q ss_pred             HHHHHhcCCcceec--------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCccccccccccCcc
Q 036662          152 LHLAVADKQIEYYN--------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNSL  223 (316)
Q Consensus       152 Lh~A~~~~~~~~v~--------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  223 (316)
                      ||+|+..|+.++++        +++.+|..|.||||+|+.........+++++|+++|++.+.....+.++.........
T Consensus       152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~  231 (285)
T 1wdy_A          152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH  231 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            99999999999988        7889999999999999994333333899999999999999888888888766554443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.8e-36  Score=260.90  Aligned_cols=184  Identities=19%  Similarity=0.199  Sum_probs=144.9

Q ss_pred             CcHHHHHHHcCCHH-HHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            2 ESKLYEAALAGSVT-SLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         2 ~t~L~~A~~~g~~~-~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      .||||.|+..++.+ +++.|++.|.++   +.+|.+|+||||+|+..|+.++|++|++.|+++ +.++..|.||+|+|+.
T Consensus        53 ~t~L~~a~~~~~~~~~v~~Ll~~Gadv---n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~  128 (269)
T 4b93_B           53 CHPLCQCPKCAPAQKRLAKVPASGLGV---NVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQ  128 (269)
T ss_dssp             ----------------------CCCCT---TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             CCHHHHHHHhCCHHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccc
Confidence            58999999988864 789999999987   455899999999999999999999999999998 8899999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ  160 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  160 (316)
                      .++.++       ++.|++ .+.+++.+|..|+||||+|+.+|+.+++++|+++|++   +|.+|..|+||||+|+..|+
T Consensus       129 ~~~~~~-------~~~Ll~-~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad---vn~~~~~g~t~Lh~A~~~g~  197 (269)
T 4b93_B          129 QGHFQV-------VKCLLD-SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS---INASNNKGNTALHEAVIEKH  197 (269)
T ss_dssp             HTCHHH-------HHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTC
T ss_pred             cChHHH-------HHHHHH-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC---CCccccCCCcHHHHHHHcCC
Confidence            999988       999999 8999999999999999999999999999999999999   99999999999999999999


Q ss_pred             cceec-------ccccccCCCCCHHHHHHhccCCCcH-HHHHHHHHHhCCCc
Q 036662          161 IEYYN-------QSECCYANGFTAWDILANSKRKMKD-WEIGELLRRAGAIS  204 (316)
Q Consensus       161 ~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~-~~i~~~Ll~~ga~~  204 (316)
                      .++++       +++.+|++|+||||+|++    .+. .++.+.|...++..
T Consensus       198 ~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~----~~~i~~lL~~l~~~~~~~  245 (269)
T 4b93_B          198 VFVVELLLLHGASVQVLNKRQRTAVDCAEQ----NSKIMELLQVVPSCVASL  245 (269)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCSGGGSCT----TCHHHHHTTC--------
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHh----CCcHHHHHHHHHHhchhh
Confidence            99999       899999999999999987    444 44555555555544

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4.1e-35  Score=246.61  Aligned_cols=180  Identities=16%  Similarity=0.151  Sum_probs=163.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhC--CCcccccCCCCCcHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQK--PGIAGELDSRKSSALHIA   78 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~~~~d~~g~tpLh~A   78 (316)
                      ++||||+|+..|+.+++++|++++++.......+..|.||||+|+..|+.+++++|+++|  +++ +..|..|.||||+|
T Consensus        36 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A  114 (228)
T 2dzn_A           36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLA  114 (228)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHH
Confidence            479999999999999999999999443222225889999999999999999999999999  887 88899999999999


Q ss_pred             HHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcC-CCccccccccCCCCcHHHHHHh
Q 036662           79 SQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENT-DDSEFLNAKDDYGMSILHLAVA  157 (316)
Q Consensus        79 ~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~d~~g~t~Lh~A~~  157 (316)
                      +..|+.++       +++|++ .+.+++.+|..|+||||+|+..|+.+++++|++.| ++   ++.+|.+|+||||+|+.
T Consensus       115 ~~~~~~~~-------~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~d~~g~t~L~~A~~  183 (228)
T 2dzn_A          115 VGKKWFEV-------SQFLIE-NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA---VNWQDKQGWTPLFHALA  183 (228)
T ss_dssp             HHTTCHHH-------HHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC---SCCCCTTSCCHHHHHHH
T ss_pred             HHcCCHhH-------HHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc---ccCcCCCCCCHHHHHHH
Confidence            99999988       999999 89999999999999999999999999999999999 88   99999999999999999


Q ss_pred             cCCcceec--------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHH
Q 036662          158 DKQIEYYN--------QSECCYANGFTAWDILANSKRKMKDWEIGELLRR  199 (316)
Q Consensus       158 ~~~~~~v~--------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~  199 (316)
                      .|+.++++        +++.+|.+|+||+|+|..    .   ++.++|++
T Consensus       184 ~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~----~---~~~~~l~~  226 (228)
T 2dzn_A          184 EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN----E---QVKKFFLN  226 (228)
T ss_dssp             TTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS----T---THHHHHHT
T ss_pred             cCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH----H---HHHHHHHh
Confidence            99999988        899999999999999976    3   46666664

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=5.6e-36  Score=257.23  Aligned_cols=192  Identities=22%  Similarity=0.219  Sum_probs=166.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHH----cChhhHHhh-hcCCCCCCHHHHHH---hcCCHHHHHHHHhhCCCc----------
Q 036662            2 ESKLYEAALAGSVTSLLEFLQ----KDRLILERA-AMNCPSETPLHVAA---LLRHKDFAKEILRQKPGI----------   63 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~-~~~~~g~t~Lh~A~---~~g~~~~v~~Ll~~~~~~----------   63 (316)
                      +|+||.|++.|+.+.++.|++    .+.++...+ ..|..|.||||+|+   ..|+.+++++|++.|++.          
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~   85 (260)
T 3jxi_A            6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSP   85 (260)
T ss_dssp             HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccc
Confidence            589999999999996666655    787775442 23478999999999   679999999999998542          


Q ss_pred             ccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCccccc--------------CCCCcHHHHHHhcCCHHHHH
Q 036662           64 AGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPL--------------IWVETILHLCVKHNQLEALK  129 (316)
Q Consensus        64 ~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~g~~~~v~  129 (316)
                      .+..|..|+||||+|+..|+.++       +++|++ .+++++..|              ..|+||||+|+..|+.++++
T Consensus        86 ~~~~d~~g~t~L~~A~~~g~~~~-------v~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~  157 (260)
T 3jxi_A           86 FRDVYYRGQTALHIAIERRCKHY-------VELLVE-KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVH  157 (260)
T ss_dssp             BCCSSEESBCHHHHHHHTTCHHH-------HHHHHH-TTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHH
T ss_pred             ccccccCCCCHHHHHHHcCCHHH-------HHHHHh-CCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHH
Confidence            14456699999999999999988       999999 889999888              68999999999999999999


Q ss_pred             HHHh---cCCCccccccccCCCCcHHHHHHhcCC---------cceec-------cc-------ccccCCCCCHHHHHHh
Q 036662          130 VLLE---NTDDSEFLNAKDDYGMSILHLAVADKQ---------IEYYN-------QS-------ECCYANGFTAWDILAN  183 (316)
Q Consensus       130 ~Ll~---~g~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~v~-------~~-------~~~~~~g~TpL~~a~~  183 (316)
                      +|++   .|++   ++.+|.+|+||||+|+..++         .++++       ++       +.+|..|+||||+|+.
T Consensus       158 ~Ll~~~~~ga~---~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~  234 (260)
T 3jxi_A          158 YLTENGHKQAD---LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAK  234 (260)
T ss_dssp             HHHHCSSCCCC---TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             HHHhccccCCC---CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHH
Confidence            9999   8999   99999999999999998877         46666       55       7899999999999999


Q ss_pred             ccCCCcHHHHHHHHHHhCCCccccc
Q 036662          184 SKRKMKDWEIGELLRRAGAISAKEM  208 (316)
Q Consensus       184 ~~~~~~~~~i~~~Ll~~ga~~~~~~  208 (316)
                          .++.+++++|+++|+++....
T Consensus       235 ----~g~~~~v~~Ll~~g~~~~~~~  255 (260)
T 3jxi_A          235 ----TGKIGIFQHIIRREIADAAAH  255 (260)
T ss_dssp             ----TTCHHHHHHHHHHHHHHHC--
T ss_pred             ----cCCHHHHHHHHHhCCCccccc
Confidence                899999999999999886543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.9e-35  Score=268.43  Aligned_cols=196  Identities=21%  Similarity=0.266  Sum_probs=146.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      +.||||.|+..|+.++|++|++++.++   +..+..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus        14 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   89 (437)
T 1n11_A           14 GLTPLHVASFMGHLPIVKNLLQRGASP---NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAAR   89 (437)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCS---CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHH
Confidence            468999999999999999999988776   344778889999999999999999999998887 7888889999999998


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ  160 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  160 (316)
                      .|+.++       +++|++ ++++++..|..|+||||+|+.+|+.+++++|++.+++   .+..+..|.||||+|+..|+
T Consensus        90 ~g~~~~-------v~~Ll~-~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~~g~  158 (437)
T 1n11_A           90 IGHTNM-------VKLLLE-NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS---QACMTKKGFTPLHVAAKYGK  158 (437)
T ss_dssp             HTCHHH-------HHHHHH-HTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTC
T ss_pred             CCCHHH-------HHHHHh-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC---CcCCCCCCCCHHHHHHHcCC
Confidence            888887       777777 5666666677777777777777777777777777666   66666677777777777777


Q ss_pred             cceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCccccc
Q 036662          161 IEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKV  215 (316)
Q Consensus       161 ~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~  215 (316)
                      .++++       +++..+..|.||||+|+.    .++.+++++|+++|++.......+.++.
T Consensus       159 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  216 (437)
T 1n11_A          159 VRVAELLLERDAHPNAAGKNGLTPLHVAVH----HNNLDIVKLLLPRGGSPHSPAWNGYTPL  216 (437)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSCCCHHHHHHH----TTCHHHHHHHGGGTCCSCCCCTTCCCHH
T ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhCCCCCCCcCCCCCCHH
Confidence            66666       566666667777777666    5666666666666666655544444444

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1e-35  Score=249.53  Aligned_cols=197  Identities=22%  Similarity=0.199  Sum_probs=177.1

Q ss_pred             cCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCccccccc
Q 036662           11 AGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNR   90 (316)
Q Consensus        11 ~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~   90 (316)
                      .|+.+++++|++++.++...  .|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.++    
T Consensus         1 gg~~~~i~~Ll~~g~~~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~----   73 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLHNQ--TDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGV----   73 (223)
T ss_dssp             ----CCEETTEETTCCTTCC--CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHH----
T ss_pred             CCcHHHHHHHHHcCCCcccc--cCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHH----
Confidence            37888999999999877432  4789999999999999999999999999998 8899999999999999999988    


Q ss_pred             HHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-----
Q 036662           91 IDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-----  165 (316)
Q Consensus        91 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-----  165 (316)
                         +++|++..+..++..+..|+||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..|+.++++     
T Consensus        74 ---v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  147 (223)
T 2f8y_A           74 ---FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLGKSALHWAAAVNNVDAAVVLLKN  147 (223)
T ss_dssp             ---HHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHHT
T ss_pred             ---HHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC---CcCcCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence               99999966668999999999999999999999999999999999   9999999999999999999999998     


Q ss_pred             --ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCccccccccccCccc
Q 036662          166 --QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNSLT  224 (316)
Q Consensus       166 --~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~  224 (316)
                        +++.+|..|.||||+|+.    .++.+++++|+++|++++.....+.++...+......
T Consensus       148 g~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~  204 (223)
T 2f8y_A          148 GANKDMQNNREETPLFLAAR----EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHH  204 (223)
T ss_dssp             TCCTTCCCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             CCCCCCcCCCCcCHHHHHHH----cCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcch
Confidence              899999999999999999    8999999999999999988888888887665554433

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=9e-35  Score=253.52  Aligned_cols=204  Identities=13%  Similarity=0.057  Sum_probs=158.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhh--------HHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCC
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLI--------LERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKS   72 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~--------~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~   72 (316)
                      ++|+||+|++.|+.+.+..++..++.-        ......|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.
T Consensus        15 ~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~~g~   93 (285)
T 3d9h_A           15 VPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITADHV   93 (285)
T ss_dssp             ---------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECTTCC
T ss_pred             HHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCC
Confidence            479999999999998888877664320        111345889999999999999999999999999998 89999999


Q ss_pred             cHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHH
Q 036662           73 SALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSIL  152 (316)
Q Consensus        73 tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~L  152 (316)
                      ||||+|+..|+.++       +++|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|++   ++.. .+|.|||
T Consensus        94 t~L~~A~~~g~~~~-------v~~Ll~-~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~-~~g~t~L  161 (285)
T 3d9h_A           94 SPLHEACLGGHLSC-------VKILLK-HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS---VQPE-SDLASPI  161 (285)
T ss_dssp             CHHHHHHHTTCHHH-------HHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SSCS-CTTSCHH
T ss_pred             CHHHHHHHCCcHHH-------HHHHHH-CCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCC---CCCC-CCCCCHH
Confidence            99999999999988       999999 8999999999999999999999999999999999998   6654 4599999


Q ss_pred             HHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCccccccccccCc
Q 036662          153 HLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNS  222 (316)
Q Consensus       153 h~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  222 (316)
                      |+|+..|+.++++       +++.+|..|.||||+|+.    .++.+++++|+++|++.+. ...+.+++..+....
T Consensus       162 ~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~  233 (285)
T 3d9h_A          162 HEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACE----NQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTA  233 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHH----TTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcC
Confidence            9999999999998       889999999999999999    8999999999999999985 555666665554443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3.5e-34  Score=242.48  Aligned_cols=180  Identities=17%  Similarity=0.118  Sum_probs=165.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      +.||||.|+..|+.+++++|++++.++   +.++..|.||||+|+..|+.+++++|+++|+...+..|..|.||||+|+.
T Consensus        44 g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  120 (237)
T 3b7b_A           44 QRTPLMEAAENNHLEAVKYLIKAGALV---DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE  120 (237)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCC---CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCHHHHHHHhCCHHHHHHHHhCCCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHH
Confidence            469999999999999999999999877   44588999999999999999999999999943348899999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ  160 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  160 (316)
                      .|+.++       +++|++ .+.+++.+|..|+||||+|+..|+.+++++|++.|++   ++.+|..|+||||+|+..++
T Consensus       121 ~~~~~~-------~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~  189 (237)
T 3b7b_A          121 YKHVDL-------VKLLLS-KGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD---LHAVNIHGDSPLHIAARENR  189 (237)
T ss_dssp             TTCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHHHTTC
T ss_pred             cCCHHH-------HHHHHH-CCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHhCC
Confidence            999988       999999 8889999999999999999999999999999999999   99999999999999999999


Q ss_pred             cceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHH
Q 036662          161 IEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLR  198 (316)
Q Consensus       161 ~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll  198 (316)
                      .++++       +++.+|++|+||||+|+.    .++.+.+..++
T Consensus       190 ~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~----~~~~~~~~~l~  230 (237)
T 3b7b_A          190 YDCVVLFLSRDSDVTLKNKEGETPLQCASL----NSQVWSALQMS  230 (237)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHSCT----TCHHHHHHHHH
T ss_pred             HhHHHHHHHcCCCCCccCCCCCCHHHHHHH----HHHHHHHHHHH
Confidence            99988       899999999999999999    67665444443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=7.9e-35  Score=263.39  Aligned_cols=185  Identities=21%  Similarity=0.196  Sum_probs=168.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhC---CCcccccCCCCCcHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQK---PGIAGELDSRKSSALHI   77 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~---~~~~~~~d~~g~tpLh~   77 (316)
                      +.||||+|+..|+.++|++|+++|+++   +.+|..|.||||+|+..|+.+++++|++++   .++ +..|..|.||||+
T Consensus       166 g~TpL~~A~~~g~~~iv~~Ll~~ga~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~  241 (373)
T 2fo1_E          166 ENTPLMLAVLARRRRLVAYLMKAGADP---TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMI  241 (373)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHH
T ss_pred             CCCHHHHHHHcChHHHHHHHHHCCCCC---cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHH
Confidence            479999999999999999999999987   445889999999999999999999999988   677 8899999999999


Q ss_pred             HHHcC---CcccccccHHHHHHHHHhCCCCccc--------ccCCCCcHHHHHHhcCCHHHHHHHHhcC-CCcccccccc
Q 036662           78 ASQKR---YVGMKSNRIDVLEELVRARPLAASA--------PLIWVETILHLCVKHNQLEALKVLLENT-DDSEFLNAKD  145 (316)
Q Consensus        78 A~~~g---~~~~~~~~~~iv~~Ll~~~~~~~~~--------~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~d  145 (316)
                      |+..+   +.++       +++|++ .+.+++.        .|..|+||||+|+..|+.+++++|++.+ ++   ++.+|
T Consensus       242 A~~~~~~~~~~~-------v~~Ll~-~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~---~n~~d  310 (373)
T 2fo1_E          242 VAHNEGRDQVAS-------AKLLVE-KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN---KDKQD  310 (373)
T ss_dssp             HHHSCSTTHHHH-------HHHHHH-HTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC---TTCCC
T ss_pred             HHHhCCcchHHH-------HHHHHH-CCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC---ccCcC
Confidence            99988   5656       999999 6666654        5779999999999999999999999886 88   99999


Q ss_pred             CCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCc
Q 036662          146 DYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAIS  204 (316)
Q Consensus       146 ~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~  204 (316)
                      .+|+||||+|+..|+.++++       +++.+|..|+||||+|+.    .++.+++++|+++|++.
T Consensus       311 ~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~----~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          311 EDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQA----NNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHH----TTCHHHHHHHHTTC---
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHH----cCCHHHHHHHHhcCccc
Confidence            99999999999999999999       899999999999999999    89999999999999874

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=3.2e-34  Score=255.93  Aligned_cols=208  Identities=21%  Similarity=0.207  Sum_probs=182.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHc-ChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            2 ESKLYEAALAGSVTSLLEFLQK-DRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      +|+||.|++.|+.+.|+.|+.. +.++   +.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus        25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~  100 (351)
T 3utm_A           25 KDELLEAARSGNEEKLMALLTPLNVNC---HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACS  100 (351)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTTTC---CCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             chhHHHHHHcCCHHHHHHHHHhcCCCc---ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHHHHHHH
Confidence            5899999999999999999986 4444   445889999999999999999999999999998 8999999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccc------------------
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLN------------------  142 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~------------------  142 (316)
                      .|+.++       +++|++ .+.+++..|..|+||||+|+.+|+.+++++|+++|+++...+                  
T Consensus       101 ~g~~~i-------v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~  172 (351)
T 3utm_A          101 YGHYEV-------TELLLK-HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRER  172 (351)
T ss_dssp             TTCHHH-------HHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHH
T ss_pred             CCCHHH-------HHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHH
Confidence            999988       999999 899999999999999999999999999999999999832211                  


Q ss_pred             ---------------------------------cccCCCCcHHHHHHhcCC---cceec-------ccccccCCCCCHHH
Q 036662          143 ---------------------------------AKDDYGMSILHLAVADKQ---IEYYN-------QSECCYANGFTAWD  179 (316)
Q Consensus       143 ---------------------------------~~d~~g~t~Lh~A~~~~~---~~~v~-------~~~~~~~~g~TpL~  179 (316)
                                                       ..+..|+||||+|+..++   .++++       +++.+|.+|.||||
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~  252 (351)
T 3utm_A          173 LTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLH  252 (351)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             HHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHH
Confidence                                             234678899999999855   45555       88999999999999


Q ss_pred             HHHhccCCCcHHHHHHHHHHhCCCcccccCCccccccccccCcccc
Q 036662          180 ILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNSLTS  225 (316)
Q Consensus       180 ~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~  225 (316)
                      +|+.    .++.+++++|+++|++.+.....+.++...+.......
T Consensus       253 ~A~~----~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~  294 (351)
T 3utm_A          253 VAAE----RAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQ  294 (351)
T ss_dssp             HHHH----TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHH----cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence            9999    89999999999999999988888888887665544333

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=7.2e-34  Score=253.36  Aligned_cols=198  Identities=18%  Similarity=0.062  Sum_probs=163.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHH------------------------------hhhcCCCCCCHHHHHHhcCCH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILE------------------------------RAAMNCPSETPLHVAALLRHK   50 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~------------------------------~~~~~~~g~t~Lh~A~~~g~~   50 (316)
                      +.||||+|+..|+.++|++|+++|+++..                              .+..|..|.||||+|+..|+.
T Consensus        59 g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~  138 (337)
T 4g8k_A           59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV  138 (337)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCH
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcH
Confidence            46999999999999999999998875432                              123567889999999999999


Q ss_pred             HHHHHHHhhCCCcc---------cccCCCCCcHHHHHHHcCCccc-------------------------------cccc
Q 036662           51 DFAKEILRQKPGIA---------GELDSRKSSALHIASQKRYVGM-------------------------------KSNR   90 (316)
Q Consensus        51 ~~v~~Ll~~~~~~~---------~~~d~~g~tpLh~A~~~g~~~~-------------------------------~~~~   90 (316)
                      +++++|+++|+++.         ...+..|.||||+|+..|+.++                               ..+.
T Consensus       139 ~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~  218 (337)
T 4g8k_A          139 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV  218 (337)
T ss_dssp             HHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTH
T ss_pred             HHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccH
Confidence            99999999988762         1235668899999999888876                               1222


Q ss_pred             HHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhc-CCCccccccccCCCCcHHHHHHhcCCcceec--cc
Q 036662           91 IDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLEN-TDDSEFLNAKDDYGMSILHLAVADKQIEYYN--QS  167 (316)
Q Consensus        91 ~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~--~~  167 (316)
                      .+++++|++ ++++++.+|.+|+||||+|+..|+.++++.|++. |++   +|.+|.+|+||||+|+..|+.++++  --
T Consensus       219 ~~i~~lLl~-~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~---vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~  294 (337)
T 4g8k_A          219 EAITHLLLD-HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLKKIAELLCK  294 (337)
T ss_dssp             HHHHHHHHH-TTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc---ccCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            457888888 8999999999999999999999999999999985 788   9999999999999999999999999  11


Q ss_pred             ccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCccc
Q 036662          168 ECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAK  206 (316)
Q Consensus       168 ~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~  206 (316)
                      .-.|.++.||||+|+.    .++.+++++|+++||+++.
T Consensus       295 ~GAd~n~~~~L~~A~~----~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          295 RGASTDCGDLVMTARR----NYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             TSCSSTTCCHHHHHHH----TTCHHHHHHHHHTTCCC--
T ss_pred             CCCCCCCCCHHHHHHH----cCCHHHHHHHHHCcCCCCC
Confidence            1224456789999999    8999999999999999864

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=2e-34  Score=259.68  Aligned_cols=188  Identities=15%  Similarity=0.083  Sum_probs=172.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhh----CCCcccc----------
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQ----KPGIAGE----------   66 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~----~~~~~~~----------   66 (316)
                      +.||||+|+..|+.++|++|++.++++     .+..|.||||+|+..|+.+++++|+++    |+++ +.          
T Consensus        53 g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~  126 (364)
T 3ljn_A           53 GCTALHLACKFGCVDTAKYLASVGEVH-----SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREV  126 (364)
T ss_dssp             CCCHHHHHHHHCCHHHHHHHHHHCCCC-----CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCE
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCc-----cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhh
Confidence            479999999999999999999999844     245899999999999999999999999    8776 55          


Q ss_pred             -------cCCCCCcHHHHHHHcC--CcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 036662           67 -------LDSRKSSALHIASQKR--YVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDD  137 (316)
Q Consensus        67 -------~d~~g~tpLh~A~~~g--~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~  137 (316)
                             .|..|.||||+|+..|  +.++       +++|++ .+++++.+|..|+||||+|+.+|+.+++++|+++|++
T Consensus       127 ~~~~~~~~~~~g~t~L~~A~~~g~~~~~~-------v~~Ll~-~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~  198 (364)
T 3ljn_A          127 NEIGSHVKHCKGQTALHWCVGLGPEYLEM-------IKILVQ-LGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPS  198 (364)
T ss_dssp             EEETTEEEEESCCCHHHHHHHSCGGGHHH-------HHHHHH-HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSC
T ss_pred             hhhccccCCCCCCCHHHHHHHcCCchHHH-------HHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence                   8889999999999999  8888       999999 6899999999999999999999999999999998876


Q ss_pred             c--cccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCccc
Q 036662          138 S--EFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAK  206 (316)
Q Consensus       138 ~--~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~  206 (316)
                      .  ..+|.+|..|+||||+|+..|+.++++       +++.+|..|.||||+|+.    .++.+++++|+++|++...
T Consensus       199 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~----~g~~~~v~~Ll~~~~~~~~  272 (364)
T 3ljn_A          199 KSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVR----AAMVLLTKELLQKTDVFLI  272 (364)
T ss_dssp             SSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH----TCCHHHHHHHHHHSCHHHH
T ss_pred             cccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH----hChHHHHHHHHHcCCchhh
Confidence            2  237889999999999999999999999       899999999999999999    8999999999999988643

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=7.3e-34  Score=240.23  Aligned_cols=187  Identities=17%  Similarity=0.142  Sum_probs=171.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      +.||||.|+..|+.+++++|+++++++...  .+..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+.
T Consensus        42 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~  118 (240)
T 3eu9_A           42 NVTLLHWAAINNRIDLVKYYISKGAIVDQL--GGDLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQ  118 (240)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--BTTTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCcchhh--cCCcCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHH
Confidence            468999999999999999999999876433  3556999999999999999999999999998 8899999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCC-HHHHHHHHhcCCCccccccccC-CCCcHHHHHHhc
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQ-LEALKVLLENTDDSEFLNAKDD-YGMSILHLAVAD  158 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~-~~~v~~Ll~~g~~~~~~~~~d~-~g~t~Lh~A~~~  158 (316)
                      .|+.++       +++|++ .+.+++.+|..|+||||+|+..++ .+++++|++.|++   ++.++. .|+||||+|+..
T Consensus       119 ~~~~~~-------~~~Ll~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~---~~~~~~~~g~t~L~~A~~~  187 (240)
T 3eu9_A          119 FGHTSI-------VAYLIA-KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS---VNLGDKYHKNTALHWAVLA  187 (240)
T ss_dssp             TTCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC---TTCCCTTTCCCHHHHHHHH
T ss_pred             cCHHHH-------HHHHHh-cCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCC---cchhhccCCCcHHHHHHHc
Confidence            999988       999999 888999999999999999997776 8999999999999   999987 999999999999


Q ss_pred             CCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcc
Q 036662          159 KQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISA  205 (316)
Q Consensus       159 ~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~  205 (316)
                      |+.++++       +++.+|..|.||||+|+.    .++.+++++|+++|++..
T Consensus       188 ~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~----~~~~~~v~~L~~~~~~~~  237 (240)
T 3eu9_A          188 GNTTVISLLLEAGANVDAQNIKGESALDLAKQ----RKNVWMINHLQEARQAKG  237 (240)
T ss_dssp             TCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHH----TTCHHHHHHHHHHC----
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH----cCcHHHHHHHHHhhhccC
Confidence            9999998       899999999999999999    899999999999998874

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=3e-34  Score=248.75  Aligned_cols=169  Identities=18%  Similarity=0.145  Sum_probs=145.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCc-----------------
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGI-----------------   63 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-----------------   63 (316)
                      +.||||+|+..|+.++|+.|+++|+++   +.+|..|.||||+|+..|+.+++++|+++|++.                 
T Consensus        45 g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~  121 (282)
T 1oy3_D           45 GQTALHLAAILGEASTVEKLYAAGAGV---LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP  121 (282)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCS---SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCc
Confidence            479999999999999999999999987   445889999999999999999999999988762                 


Q ss_pred             -----------------------------ccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCC-CC
Q 036662           64 -----------------------------AGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIW-VE  113 (316)
Q Consensus        64 -----------------------------~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~-g~  113 (316)
                                                   .+.+|..|.||||+|+..|+.++       +++|++ .+.+++..+.. |+
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~-------v~~Ll~-~g~~~~~~~~~~g~  193 (282)
T 1oy3_D          122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEM-------VRLLRD-AGADLNKPEPTCGR  193 (282)
T ss_dssp             ----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHH-------HHHHHH-HTCCTTCCCTTTCC
T ss_pred             chhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHH-------HHHHHH-cCCCCCCCCCCCCc
Confidence                                         26678999999999999999988       999999 78888888754 99


Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHh
Q 036662          114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILAN  183 (316)
Q Consensus       114 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~  183 (316)
                      ||||+|+.+|+.+++++|+++|++   ++.+|..|+||||+|+..|+.++++       +++.+|..|.|||++|..
T Consensus       194 tpL~~A~~~~~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          194 TPLHLAVEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC------------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC---CcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCC
Confidence            999999999999999999999999   9999999999999999999999999       899999999999999987

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=3.6e-34  Score=250.73  Aligned_cols=182  Identities=23%  Similarity=0.223  Sum_probs=160.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      +.||||.|+..|+.++|++|++.|+++   +.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+.
T Consensus        73 g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~  148 (299)
T 1s70_B           73 GLTALHQACIDDNVDMVKFLVENGANI---NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEE  148 (299)
T ss_dssp             CCBHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHh
Confidence            469999999999999999999999987   445889999999999999999999999999998 8899999999999998


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcc--------------------------cccCCCCcHHHHHHhcCCHHHHHHHHhc
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAAS--------------------------APLIWVETILHLCVKHNQLEALKVLLEN  134 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~--------------------------~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  134 (316)
                      .|+.++       ++.++...+.+++                          ..+..|.||||+|+.+|+.+++++|+++
T Consensus       149 ~~~~~~-------~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  221 (299)
T 1s70_B          149 EAMEEL-------LQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA  221 (299)
T ss_dssp             HHHHHH-------HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cchHHH-------HHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc
Confidence            888777       7777665544433                          3567899999999999999999999999


Q ss_pred             CCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhC
Q 036662          135 TDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAG  201 (316)
Q Consensus       135 g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~g  201 (316)
                      |++   +|.+|.+|+||||+|+..|+.++++       +++.+|..|+||||+|.+     +..+.++.+++..
T Consensus       222 g~d---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~-----~~~~~l~~l~~~~  287 (299)
T 1s70_B          222 RYD---VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE-----DILGYLEELQKKQ  287 (299)
T ss_dssp             TCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS-----GGGHHHHHHHHHT
T ss_pred             CCC---CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH-----HHHHHHHHHHHHH
Confidence            999   9999999999999999999999998       899999999999999976     3445555555443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=3.7e-34  Score=248.51  Aligned_cols=189  Identities=16%  Similarity=0.144  Sum_probs=169.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCC-CcccccCCCCCcHHHHHHH
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKP-GIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-~~~~~~d~~g~tpLh~A~~   80 (316)
                      .+++|.|+..|+.+.++.+++.+.+. ..+.+|..|+||||+|+..|+.+++++|++.|+ ++ +..|..|.||||+|+.
T Consensus        77 ~~~l~~a~~~~~~~~~~~l~~~~~~~-~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~a~~  154 (276)
T 4hbd_A           77 RSDAHPELVRRHLVTFRAMSARLLDY-VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV-DKQNRAGYSPIMLTAL  154 (276)
T ss_dssp             STTCCHHHHHHHHHHHHHHCHHHHHH-HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHGGG
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHhh-cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-CCCCCCCCCHHHHHHH
Confidence            47889999999999999999987663 235679999999999999999999999999999 55 9999999999999995


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ  160 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  160 (316)
                      ....  ..++.++++.|++ .+...+..|..|+||||+|+.+|+.+++++|+++|++   +|.+|.+|+||||+|+..|+
T Consensus       155 ~~~~--~~~~~~~v~~Ll~-~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad---~n~~d~~G~TpLh~A~~~g~  228 (276)
T 4hbd_A          155 ATLK--TQDDIETVLQLFR-LGNINAKASQAGQTALMLAVSHGRVDVVKALLACEAD---VNVQDDDGSTALMCACEHGH  228 (276)
T ss_dssp             CCCC--SHHHHHHHHHHHH-HSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTC
T ss_pred             HHhh--hhhhHHHHHHHHH-cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCCCCCCCCCHHHHHHHCCC
Confidence            4333  2345556999999 7788888899999999999999999999999999999   99999999999999999999


Q ss_pred             cceec--------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCC
Q 036662          161 IEYYN--------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGA  202 (316)
Q Consensus       161 ~~~v~--------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga  202 (316)
                      .++++        +++.+|.+|+||||+|+.    .++.+++++|++++.
T Consensus       229 ~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          229 KEIAGLLLAVPSCDISLTDRDGSTALMVALD----AGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHHHHHHHTSTTCCTTCCCTTSCCHHHHHHH----HTCHHHHHHHHHHCC
T ss_pred             HHHHHHHHhcCCCCCcCcCCCCCCHHHHHHH----cCCHHHHHHHHhccC
Confidence            99988        789999999999999999    899999999998764

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=5e-33  Score=224.02  Aligned_cols=150  Identities=23%  Similarity=0.218  Sum_probs=135.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      .||||.|+..|+.+.++.|++++++..  +.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   79 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLV--NKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTG   79 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGG--GCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccc--cCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHC
Confidence            479999999999999999999988632  445889999999999999999999999999998 88999999999999999


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCc
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQI  161 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  161 (316)
                      |+.++       +++|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..++.
T Consensus        80 ~~~~~-------v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~  148 (172)
T 3v30_A           80 GYTDI-------VGLLLE-RDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD---LTTEADSGYTPMDLAVALGYR  148 (172)
T ss_dssp             TCHHH-------HHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCH
T ss_pred             CCHHH-------HHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHhCcH
Confidence            99988       999999 8899999999999999999999999999999999999   888888888888888887665


Q ss_pred             ceec
Q 036662          162 EYYN  165 (316)
Q Consensus       162 ~~v~  165 (316)
                      ++++
T Consensus       149 ~~~~  152 (172)
T 3v30_A          149 KVQQ  152 (172)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-33  Score=251.09  Aligned_cols=196  Identities=16%  Similarity=0.051  Sum_probs=161.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCC
Q 036662            4 KLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRY   83 (316)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~   83 (316)
                      .+|.|+..+..++++.|++.+.+++.+  +|..|+||||+|+..|+.++|++|+++|+++ +.+|..|+||||+|+..|+
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~--~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~  176 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNLNIP--VDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVN  176 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCSCSC--CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSH
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCcccc--cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcc
Confidence            357788888889999999999887431  5899999999999999999999999999999 8999999999999999998


Q ss_pred             ---cccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHh----cCCHHHHHHHHhc--------------------CC
Q 036662           84 ---VGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVK----HNQLEALKVLLEN--------------------TD  136 (316)
Q Consensus        84 ---~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~g~~~~v~~Ll~~--------------------g~  136 (316)
                         .++       ++.|++...++++.+|..|+||||+|+.    .|+.+++++|++.                    |+
T Consensus       177 ~~~~~~-------~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~  249 (327)
T 1sw6_A          177 NYDSGT-------FEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES  249 (327)
T ss_dssp             HHHTTC-------HHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------
T ss_pred             cccHHH-------HHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccC
Confidence               788       9999996667899999999999999999    8999999999987                    77


Q ss_pred             CccccccccCCCCcHHHHHHhcCCcceec--ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCcccc
Q 036662          137 DSEFLNAKDDYGMSILHLAVADKQIEYYN--QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATK  214 (316)
Q Consensus       137 ~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~--~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~  214 (316)
                      +   ++.+|.+|.||||+|+.   .+.+-  +++.+|.+|+||||+|+.    .++.+++++|+++|++++.....+.+|
T Consensus       250 ~---~~~~~~~g~t~L~~a~~---~~~Ll~~~~n~~d~~G~TpLh~A~~----~g~~~~v~~Ll~~Gad~~~~d~~G~Tp  319 (327)
T 1sw6_A          250 K---PNDKNGERKDSILENLD---LKWIIANMLNAQDSNGDTCLNIAAR----LGNISIVDALLDYGADPFIANKSGLRP  319 (327)
T ss_dssp             -------------CHHHHHCS---HHHHHHHTTTCCCTTSCCHHHHHHH----HCCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred             C---cccccccCCChhHHHHH---HHHHHHhCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence            7   99999999999999986   22111  799999999999999999    899999999999999999998888888


Q ss_pred             ccccc
Q 036662          215 VSITQ  219 (316)
Q Consensus       215 ~~~~~  219 (316)
                      +.++.
T Consensus       320 L~~A~  324 (327)
T 1sw6_A          320 VDFGA  324 (327)
T ss_dssp             GGGTC
T ss_pred             HHHHH
Confidence            76543

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=9.7e-33  Score=219.99  Aligned_cols=157  Identities=22%  Similarity=0.238  Sum_probs=125.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      +||||.|+..|+.++++.|++++.++   +.+|..|+||||+|+. |+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQNNVNV---NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAARA   80 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCCT---TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             hhHHHHHHHcCCHHHHHHHHhCCCCc---cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            57888888888888888888888776   3447888888888888 8888888888888887 77888888888888888


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCc
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQI  161 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  161 (316)
                      |+.++       +++|++ .+.+++.+|.+|+||||+|+..|+.+++++|+++|+++  ++.                  
T Consensus        81 ~~~~~-------v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~------------------  132 (162)
T 1ihb_A           81 GFLDT-------LQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN--VGH------------------  132 (162)
T ss_dssp             TCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC--TTC------------------
T ss_pred             CCHHH-------HHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCC--CCC------------------
Confidence            88877       888888 77888888888888888888888888888888888761  244                  


Q ss_pred             ceecccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCC
Q 036662          162 EYYNQSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAI  203 (316)
Q Consensus       162 ~~v~~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~  203 (316)
                              +|..|.||||+|+.    .++.+++++|+++||+
T Consensus       133 --------~~~~g~t~l~~A~~----~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          133 --------RNHKGDTACDLARL----YGRNEVVSLMQANGAG  162 (162)
T ss_dssp             --------CCTTSCCHHHHHHH----TTCHHHHHHHHHTC--
T ss_pred             --------cCCCCCcHHHHHHH----cCCHHHHHHHHHhCCC
Confidence                    44455556666666    6678889999999885

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=3.1e-32  Score=218.31  Aligned_cols=148  Identities=22%  Similarity=0.201  Sum_probs=126.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      ++||||.|+..|+.++++.|++.+.++   +.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+.
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVI---NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACS   78 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCc---CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence            468999999999999999999988776   445888999999999999999999999999988 8888999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ  160 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  160 (316)
                      .|+.++       +++|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..|+
T Consensus        79 ~~~~~~-------v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~  147 (167)
T 3v31_A           79 KGYTDI-------VKMLLD-CGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD---PTIETDSGYNSMDLAVALGY  147 (167)
T ss_dssp             HTCHHH-------HHHHHH-HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTC
T ss_pred             cCCHHH-------HHHHHH-CCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCc
Confidence            888888       999998 7888888899999999999999999999999999888   77777777777777776655


Q ss_pred             cce
Q 036662          161 IEY  163 (316)
Q Consensus       161 ~~~  163 (316)
                      .++
T Consensus       148 ~~~  150 (167)
T 3v31_A          148 RSV  150 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.98  E-value=1.5e-32  Score=225.29  Aligned_cols=155  Identities=19%  Similarity=0.154  Sum_probs=145.2

Q ss_pred             hhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccC
Q 036662           31 AAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLI  110 (316)
Q Consensus        31 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~  110 (316)
                      +.+|..|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.++       +++|++ .+.+++.+|.
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~-------v~~Ll~-~g~~~~~~~~   99 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGI-------AEKLLS-KGSNVNTKDF   99 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHH-------HHHHHH-HTCCTTCCCT
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHH-------HHHHHH-CCCCCCCCCC
Confidence            446889999999999999999999999999998 8889999999999999999888       999999 7788999999


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHh
Q 036662          111 WVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILAN  183 (316)
Q Consensus       111 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~  183 (316)
                      .|+||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..|+.++++       +++.+|..|.||||+|+.
T Consensus       100 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  176 (192)
T 2rfm_A          100 SGKTPLMWSIIFGYSEMSYFLLEHGAN---VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARI  176 (192)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            999999999999999999999999999   9999999999999999999999988       889999999999999999


Q ss_pred             ccCCCcHHHHHHHHHHhC
Q 036662          184 SKRKMKDWEIGELLRRAG  201 (316)
Q Consensus       184 ~~~~~~~~~i~~~Ll~~g  201 (316)
                          .++.+++++|+++|
T Consensus       177 ----~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          177 ----FGRQEVIKIFTEVR  190 (192)
T ss_dssp             ----TTCHHHHHHHHHHH
T ss_pred             ----hCcHHHHHHHHhcc
Confidence                89999999999876

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.98  E-value=2.4e-32  Score=215.91  Aligned_cols=148  Identities=20%  Similarity=0.289  Sum_probs=139.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      +|+||.|++.|+.+++++|+++++++.    .+..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC----CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence            589999999999999999999998652    4788999999999999999999999999998 88999999999999999


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCc
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQI  161 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  161 (316)
                      |+.++       +++|++ .+.+++.+|..|+||||+|+.+|+.+++++|+++|++   ++.+|.+|+||||+|+..|+.
T Consensus        78 ~~~~~-------v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~  146 (153)
T 1awc_B           78 GHANI-------VEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD---VHTQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             TCHHH-------HHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCH
T ss_pred             ChHHH-------HHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCH
Confidence            99988       999999 8999999999999999999999999999999999999   999999999999999999988


Q ss_pred             ceec
Q 036662          162 EYYN  165 (316)
Q Consensus       162 ~~v~  165 (316)
                      ++++
T Consensus       147 ~i~~  150 (153)
T 1awc_B          147 DLAE  150 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7754

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.98  E-value=3.7e-32  Score=222.93  Aligned_cols=150  Identities=19%  Similarity=0.119  Sum_probs=142.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      ++||||.|+..|+.+++++|++++.++   +.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus        35 g~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~  110 (192)
T 2rfm_A           35 NRTPLMVACMLGMENAIDKLVENFDKL---EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMWSII  110 (192)
T ss_dssp             CCCHHHHHHHHTCGGGHHHHHHHHCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcccc---ccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHH
Confidence            479999999999999999999998876   445889999999999999999999999999998 8899999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ  160 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  160 (316)
                      .|+.++       +++|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..|+
T Consensus       111 ~~~~~~-------v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~  179 (192)
T 2rfm_A          111 FGYSEM-------SYFLLE-HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD---ISARDLTGLTAEASARIFGR  179 (192)
T ss_dssp             HTCHHH-------HHHHHH-TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTC
T ss_pred             cCCHHH-------HHHHHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHhCc
Confidence            999988       999999 8999999999999999999999999999999999999   99999999999999999999


Q ss_pred             cceec
Q 036662          161 IEYYN  165 (316)
Q Consensus       161 ~~~v~  165 (316)
                      .++++
T Consensus       180 ~~~v~  184 (192)
T 2rfm_A          180 QEVIK  184 (192)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.98  E-value=9.2e-32  Score=216.21  Aligned_cols=147  Identities=25%  Similarity=0.361  Sum_probs=115.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      .++|++|++.|+.++|++|++++.++   +.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..
T Consensus        15 ~~~l~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           15 GKKLLEAARAGRDDEVRILMANGADV---NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHc
Confidence            36788888888888888888888766   334777888888888888888888888888887 77788888888888888


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCc
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQI  161 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  161 (316)
                      |+.++       +++|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..|+.
T Consensus        91 ~~~~~-------~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~  159 (169)
T 2y1l_E           91 GHLEI-------VEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISIDNGNE  159 (169)
T ss_dssp             TCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCH
T ss_pred             CCHHH-------HHHHHH-cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHhCCH
Confidence            87777       888888 7777888888888888888888888888888888887   777777777776666665554


Q ss_pred             ce
Q 036662          162 EY  163 (316)
Q Consensus       162 ~~  163 (316)
                      ++
T Consensus       160 ~~  161 (169)
T 2y1l_E          160 DL  161 (169)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.98  E-value=2.6e-32  Score=219.86  Aligned_cols=162  Identities=19%  Similarity=0.146  Sum_probs=147.8

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHH
Q 036662           37 SETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETIL  116 (316)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~L  116 (316)
                      +.||||.|+..|+.++++.|++.+++..+.+|..|.||||+|+..|+.++       +++|++ .+.+++.+|..|+|||
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~-------v~~Ll~-~g~~~~~~~~~g~t~L   73 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIET-------VRFLLE-WGADPHILAKERESAL   73 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHH-------HHHHHH-HTCCTTCCCTTCCCHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHH-------HHHHHH-cCCCchhhcccCCCHH
Confidence            56899999999999999999999999669999999999999999999988       999999 7888999999999999


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCc
Q 036662          117 HLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMK  189 (316)
Q Consensus       117 h~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~  189 (316)
                      |+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..|+.++++       +++.+|..|.||||+|+.    .+
T Consensus        74 ~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~----~~  146 (172)
T 3v30_A           74 SLASTGGYTDIVGLLLERDVD---INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVA----LG  146 (172)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----HT
T ss_pred             HHHHHCCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH----hC
Confidence            999999999999999999999   9999999999999999999999998       899999999999999999    89


Q ss_pred             HHHHHHHHHHhCCCcccccCCccc
Q 036662          190 DWEIGELLRRAGAISAKEMQQPAT  213 (316)
Q Consensus       190 ~~~i~~~Ll~~ga~~~~~~~~~~~  213 (316)
                      +.+++++|+++|++.......+.+
T Consensus       147 ~~~~~~~L~~~~~~~~~~~~~~~~  170 (172)
T 3v30_A          147 YRKVQQVIENHILKLFQSNLVPAD  170 (172)
T ss_dssp             CHHHHHHHHHHHHHHSCC------
T ss_pred             cHHHHHHHHHHHHHHhcccCCCCC
Confidence            999999999999988766554443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.98  E-value=4.3e-32  Score=217.53  Aligned_cols=156  Identities=15%  Similarity=0.138  Sum_probs=148.3

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcH
Q 036662           36 PSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETI  115 (316)
Q Consensus        36 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~  115 (316)
                      .|.||||.|+..|+.++++.|++.|+++ +.+|..|.||||+|+..|+.++       +++|++ .+.+++..|..|+||
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~-------v~~Ll~-~g~~~~~~~~~g~t~   72 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAV-------VEFLLQ-NGADPQLLGKGRESA   72 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHH-------HHHHHH-TTCCTTCCCTTCCCH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHH-------HHHHHH-cCCCCCCcCCCCCcH
Confidence            5899999999999999999999999997 8999999999999999999988       999999 789999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCC
Q 036662          116 LHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKM  188 (316)
Q Consensus       116 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~  188 (316)
                      ||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..|+.++++       +++.+|..|.||||+|+.    .
T Consensus        73 L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~----~  145 (167)
T 3v31_A           73 LSLACSKGYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVA----L  145 (167)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----H
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC---CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH----c
Confidence            9999999999999999999999   9999999999999999999999998       889999999999999999    8


Q ss_pred             cHHHHHHHHHHhCCCcccc
Q 036662          189 KDWEIGELLRRAGAISAKE  207 (316)
Q Consensus       189 ~~~~i~~~Ll~~ga~~~~~  207 (316)
                      ++.+++++|++++++...+
T Consensus       146 ~~~~~~~~L~~~~~~~~~~  164 (167)
T 3v31_A          146 GYRSVQQVIESHLLKLLQN  164 (167)
T ss_dssp             TCHHHHHHHHHHHHHHCSS
T ss_pred             CcHHHHHHHHHHHHHHHHH
Confidence            9999999999998876543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=3.6e-32  Score=237.07  Aligned_cols=190  Identities=12%  Similarity=-0.005  Sum_probs=166.1

Q ss_pred             HHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCccccc
Q 036662            9 ALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKS   88 (316)
Q Consensus         9 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~   88 (316)
                      +...+.+.+..+|..+ ++   +.+|..|.||||+|+..|+.+++++|+++|+++ +..  +|+||||+|+..|+.++  
T Consensus         7 i~~~~~~~v~~lL~~~-~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~--   77 (285)
T 3kea_A            7 INTWKSKQLKSFLSSK-DT---FKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKI--   77 (285)
T ss_dssp             GGGCCHHHHHHHHHST-TT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHH--
T ss_pred             HHhcCHHHHHHHHHhC-CC---CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHH--
Confidence            4456666666766655 33   456999999999999999999999999999998 655  49999999999999998  


Q ss_pred             ccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCC-CcHHHHHHhcCCcceec--
Q 036662           89 NRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYG-MSILHLAVADKQIEYYN--  165 (316)
Q Consensus        89 ~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g-~t~Lh~A~~~~~~~~v~--  165 (316)
                           +++|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|++   ++.+|..| .||||+|+..|+.++++  
T Consensus        78 -----v~~Ll~-~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~~t~L~~A~~~~~~~~v~~L  148 (285)
T 3kea_A           78 -----VKILLF-SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR---LMFYGKTGWKTSFYHAVMLNDVSIVSYF  148 (285)
T ss_dssp             -----HHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG---GGGCSSSGGGSHHHHHHHTTCHHHHHHH
T ss_pred             -----HHHHHH-CCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---CCccCCCCCCCHHHHHHHcCCHHHHHHH
Confidence                 999999 8999999999999999999999999999999999999   99999999 89999999999999998  


Q ss_pred             ---ccccccC-CCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCcccc-cccccc
Q 036662          166 ---QSECCYA-NGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATK-VSITQT  220 (316)
Q Consensus       166 ---~~~~~~~-~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~-~~~~~~  220 (316)
                         ..+..+. .|.||||+|+.    .++.+++++|+++|++.+.....+.++ ...+..
T Consensus       149 l~~g~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~  204 (285)
T 3kea_A          149 LSEIPSTFDLAILLSCIHITIK----NGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAID  204 (285)
T ss_dssp             HTTSCTTCCCSTHHHHHHHHHH----TTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHH
T ss_pred             HhCCCccccccCCccHHHHHHH----cChHHHHHHHHHcCCCCCcccCCCCChHHHHHHH
Confidence               2333444 89999999999    899999999999999999888777776 554443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=1.8e-31  Score=214.46  Aligned_cols=152  Identities=24%  Similarity=0.247  Sum_probs=143.7

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCC
Q 036662           34 NCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVE  113 (316)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~  113 (316)
                      ...+.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.++       +++|++ .+.+++..|..|+
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~-------v~~Ll~-~g~~~~~~~~~g~   81 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLAAFNGHLEI-------VEVLLK-NGADVNAVDHAGM   81 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHH-------HHHHHH-TTCCTTCCCTTSC
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHH-------HHHHHH-cCCCCCccCCCCC
Confidence            566789999999999999999999999998 8899999999999999999988       999999 8889999999999


Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccC
Q 036662          114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKR  186 (316)
Q Consensus       114 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~  186 (316)
                      ||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..++.++++       +++.+|..|.||||+|+.   
T Consensus        82 t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~---  155 (169)
T 2y1l_E           82 TPLRLAALFGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISID---  155 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH---
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH---
Confidence            999999999999999999999999   9999999999999999999999998       889999999999999999   


Q ss_pred             CCcHHHHHHHHHHhC
Q 036662          187 KMKDWEIGELLRRAG  201 (316)
Q Consensus       187 ~~~~~~i~~~Ll~~g  201 (316)
                       .++.+++++|++.|
T Consensus       156 -~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          156 -NGNEDLAEILQKLN  169 (169)
T ss_dssp             -TTCHHHHHHHHTC-
T ss_pred             -hCCHHHHHHHHHcC
Confidence             89999999999876

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=6.4e-34  Score=240.31  Aligned_cols=178  Identities=16%  Similarity=0.012  Sum_probs=159.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      .||||.|+..|+.++|+.|++.++++   +.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..
T Consensus        22 ~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~   97 (229)
T 2vge_A           22 LVLLLDAALTGELEVVQQAVKEMNDP---SQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASC   97 (229)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHSSCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHc
Confidence            47899999999999999999999887   445899999999999999999999999999998 89999999999999999


Q ss_pred             CCcccccccHHHHHHHHHhCCCCccccc-CCCCcHHHHH--HhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhc
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPL-IWVETILHLC--VKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVAD  158 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d-~~g~t~Lh~A--~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~  158 (316)
                      |+.++       +++|++ .+.+++..+ .+|+||||+|  +..|+.+++++|++.|++   ++.+|..|.||+|.++..
T Consensus        98 g~~~~-------v~~Ll~-~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~~l~~~~~~  166 (229)
T 2vge_A           98 NDTVI-------CMALVQ-HGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS---MGLMNSGAVYALWDYSAE  166 (229)
T ss_dssp             TCHHH-------HHHHHT-TTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH---TTTSGGGEEEESSCBCCS
T ss_pred             CCHHH-------HHHHHH-cCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC---cccccCCchHHHHHHhhc
Confidence            99988       999999 888888886 6999999999  999999999999999999   999999999999976665


Q ss_pred             CCcceec------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHH
Q 036662          159 KQIEYYN------QSECCYANGFTAWDILANSKRKMKDWEIGELLR  198 (316)
Q Consensus       159 ~~~~~v~------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll  198 (316)
                      ...+++-      +++.+|.+|+||||+|+.    .++.++++.++
T Consensus       167 ~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~----~g~~~~v~~~~  208 (229)
T 2vge_A          167 FGDELSFREGESVTVLRRDGPEETDWWWAAL----HGQEGYVPRNY  208 (229)
T ss_dssp             STTBCCBCTTCEEEEEESSCTTCSSEEEEEE----TTEEEEEEGGG
T ss_pred             cccccCccccccccccccCCCcccHHHHHHH----cCCcceeehhh
Confidence            5444433      488899999999999999    77777776543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=2.4e-31  Score=215.71  Aligned_cols=164  Identities=13%  Similarity=0.103  Sum_probs=131.0

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      .++||.|+..|+.++|+.|++++...  .+..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDNTEND--LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHCTTSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHc
Confidence            47888888888888888888875421  1345778888888888888888888888888887 77888888888888888


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCc
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQI  161 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  161 (316)
                      |+.++       +++|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|      
T Consensus        83 ~~~~~-------v~~Ll~-~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A------  145 (179)
T 3f6q_A           83 GHRDI-------VQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL---VSICNKYGEMPVDKA------  145 (179)
T ss_dssp             TCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SSBCCTTSCCGGGGS------
T ss_pred             CCHHH-------HHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---cchhccCCCCcHHHH------
Confidence            88877       888888 7888888888888888888888888888888888887   666666555555544      


Q ss_pred             ceecccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccC
Q 036662          162 EYYNQSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQ  209 (316)
Q Consensus       162 ~~v~~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~  209 (316)
                                          +.    .++.+++++|+++|++.+....
T Consensus       146 --------------------~~----~~~~~~~~~L~~~g~~~~~~~~  169 (179)
T 3f6q_A          146 --------------------KA----PLRELLRERAEKMGQNLNRIPY  169 (179)
T ss_dssp             --------------------CH----HHHHHHHHHHHHTTCCCSCBCC
T ss_pred             --------------------HH----HHHHHHHHHHHHhhcCcccCCc
Confidence                                44    5678899999999999976443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=3.8e-31  Score=223.11  Aligned_cols=172  Identities=19%  Similarity=0.151  Sum_probs=151.2

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhh-CCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCc-----cccc
Q 036662           36 PSETPLHVAALLRHKDFAKEILRQ-KPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAA-----SAPL  109 (316)
Q Consensus        36 ~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~-----~~~d  109 (316)
                      .|+||||+|+..|+.++++.|++. |.++ +.+|..|+||||+|+..|+.++       +++|++ .+.++     +..|
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~-------v~~Ll~-~~~~~~~~~~~~~~   72 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEA-------AMVLME-AAPELVFEPMTSEL   72 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHH-------HHHHHH-HCGGGGGCCCCSTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHH-------HHHHHH-cCchhccccccccC
Confidence            589999999999999999999998 8888 8899999999999999999988       999999 44443     5667


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccC-------------CCCcHHHHHHhcCCcceec-------cccc
Q 036662          110 IWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDD-------------YGMSILHLAVADKQIEYYN-------QSEC  169 (316)
Q Consensus       110 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~-------------~g~t~Lh~A~~~~~~~~v~-------~~~~  169 (316)
                      ..|+||||+|+.+|+.+++++|+++|++   ++.++.             +|+||||+|+..|+.++++       +++.
T Consensus        73 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  149 (232)
T 2rfa_A           73 YEGQTALHIAVINQNVNLVRALLARGAS---VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA  149 (232)
T ss_dssp             TTTCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             CCCcCHHHHHHHcCCHHHHHHHHhCCCC---CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            8999999999999999999999999999   776655             8999999999999999999       8999


Q ss_pred             ccCCCCCHHHHHHhccCCCcHHHHH----HHHHHhCCCc------ccccCCccccccccccCcc
Q 036662          170 CYANGFTAWDILANSKRKMKDWEIG----ELLRRAGAIS------AKEMQQPATKVSITQTNSL  223 (316)
Q Consensus       170 ~~~~g~TpL~~a~~~~~~~~~~~i~----~~Ll~~ga~~------~~~~~~~~~~~~~~~~~~~  223 (316)
                      +|.+|+||||+|+.    .++.+++    ++|+++|++.      +.....+.+|...+.....
T Consensus       150 ~d~~g~t~L~~A~~----~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~  209 (232)
T 2rfa_A          150 QDSLGNTVLHILIL----QPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN  209 (232)
T ss_dssp             CCTTSCCHHHHHHT----CSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHH----cCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC
Confidence            99999999999999    7787777    9999999987      3556666777665544433

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=9.7e-32  Score=227.55  Aligned_cols=169  Identities=18%  Similarity=0.133  Sum_probs=153.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCc-----ccccCCCCCcHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGI-----AGELDSRKSSAL   75 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-----~~~~d~~g~tpL   75 (316)
                      +.||||+|+..|+.+++++|+++|+++   +.+|..|.||||+|+..|+.+++++|+++|+++     .+..|..|.|||
T Consensus        45 g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L  121 (236)
T 1ikn_D           45 QQTPLHLAVITNQPEIAEALLGAGCDP---ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL  121 (236)
T ss_dssp             CCCHHHHHHHTTCHHHHHCCCSCCCCS---CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHH
Confidence            469999999999999999999999887   445889999999999999999999999999752     477889999999


Q ss_pred             HHHHHcCCcccccccHHHHHHHHHhCCCCcccccC-CCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHH
Q 036662           76 HIASQKRYVGMKSNRIDVLEELVRARPLAASAPLI-WVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHL  154 (316)
Q Consensus        76 h~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~  154 (316)
                      |+|+..|+.++       +++|++ .+.+++.++. .|+||||+|+..|+.+++++|+++|++   ++.+|..|+||||+
T Consensus       122 ~~A~~~~~~~~-------v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~  190 (236)
T 1ikn_D          122 HLASIHGYLGI-------VELLVS-LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD---VNRVTYQGYSPYQL  190 (236)
T ss_dssp             HHHHHTTCHHH-------HHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC---SCCCCTTCCCGGGG
T ss_pred             HHHHHcCCHHH-------HHHHHH-cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcccCCCCCHHHH
Confidence            99999999988       999999 8888999887 999999999999999999999999999   99999999999999


Q ss_pred             HHhcCCcceec-------c--cccccCCCCCHHHHHHh
Q 036662          155 AVADKQIEYYN-------Q--SECCYANGFTAWDILAN  183 (316)
Q Consensus       155 A~~~~~~~~v~-------~--~~~~~~~g~TpL~~a~~  183 (316)
                      |+..++.++++       +  ....+..|.||.+.+..
T Consensus       191 A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          191 TWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             CTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred             HHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence            99999999998       3  34788899999887655

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=7.2e-31  Score=207.87  Aligned_cols=147  Identities=23%  Similarity=0.308  Sum_probs=132.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcC-hhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKD-RLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      +||||.|+..|+.+.++.|+++. .++   +..|..|.||||+ +..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~---~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~   77 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHP---DALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCT---TCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCc---cccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHH
Confidence            58999999999999999999982 144   4468899999999 9999999999999999998 8899999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ  160 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  160 (316)
                      .|+.++       +++|++ .+.+++.+|..|+||||+|+.+|+.+++++|++. ++   ++.+|.+|+||||+|+..|+
T Consensus        78 ~~~~~~-------v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~---~~~~~~~g~t~l~~A~~~~~  145 (156)
T 1bd8_A           78 TGFLDT-------LKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD---LHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             TTCHHH-------HHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC---TTCCCTTSCCHHHHHHHSCC
T ss_pred             cCcHHH-------HHHHHH-cCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC---CCCcCCCCCCHHHHHHHcCc
Confidence            999888       999999 8899999999999999999999999999999998 77   88888888888888888877


Q ss_pred             cceec
Q 036662          161 IEYYN  165 (316)
Q Consensus       161 ~~~v~  165 (316)
                      .++++
T Consensus       146 ~~~v~  150 (156)
T 1bd8_A          146 QDLVD  150 (156)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66653

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=2.4e-31  Score=212.74  Aligned_cols=142  Identities=24%  Similarity=0.278  Sum_probs=117.4

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      +|+||.|++.|+.++++.|++.+..  .....+..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..
T Consensus         9 ~~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~   85 (165)
T 3twr_A            9 DRQLLEAAKAGDVETVKKLCTVQSV--NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSY   85 (165)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTT--TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCC--CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHc
Confidence            5788999999999999998886542  12334677889999999999999999999999887 88888899999999988


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHh
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVA  157 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~  157 (316)
                      |+.++       +++|++ .+.+++.+|..|+||||+|+.+|+.+++++|+++|++   ++.+|.+|+||||+|+.
T Consensus        86 ~~~~~-------v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~a~~  150 (165)
T 3twr_A           86 GHYEV-------AELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD---PTKKNRDGNTPLDLVKD  150 (165)
T ss_dssp             TCHHH-------HHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCTGGGSCT
T ss_pred             CcHHH-------HHHHHh-CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCChhHhHhc
Confidence            88887       899888 8888888888899999999999999999999998888   77777777777766543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=4.6e-31  Score=211.04  Aligned_cols=153  Identities=22%  Similarity=0.236  Sum_probs=141.4

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCC
Q 036662           34 NCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVE  113 (316)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~  113 (316)
                      |.+|.||||.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.++       +++|++ .+.+++.+|..|+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~-------v~~Ll~-~g~~~~~~~~~g~   76 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV-------VEYLLQ-HGADVHAKDKGGL   76 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHH-------HHHHHH-TTCCTTCCCTTSC
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHH-------HHHHHh-cCCCCCccCCCCC
Confidence            67789999999999999999999997665558889999999999999999988       999999 8899999999999


Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccC
Q 036662          114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKR  186 (316)
Q Consensus       114 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~  186 (316)
                      ||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..|+.++++       +++.+|.+|+||||+|..   
T Consensus        77 t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~---  150 (165)
T 3twr_A           77 VPLHNACSYGHYEVAELLVKHGAV---VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD---  150 (165)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT---
T ss_pred             CHHHHHHHcCcHHHHHHHHhCCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc---
Confidence            999999999999999999999999   9999999999999999999999999       899999999999999765   


Q ss_pred             CCcHHHHHHHHHHhCC
Q 036662          187 KMKDWEIGELLRRAGA  202 (316)
Q Consensus       187 ~~~~~~i~~~Ll~~ga  202 (316)
                        ++.+++++|+++||
T Consensus       151 --~~~~i~~~L~~~gA  164 (165)
T 3twr_A          151 --GDTDIQDLLRGDAA  164 (165)
T ss_dssp             --TCHHHHHHHHTC--
T ss_pred             --CChHHHHHHhhccc
Confidence              66799999999986

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=9.4e-31  Score=212.21  Aligned_cols=132  Identities=20%  Similarity=0.128  Sum_probs=68.1

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcH
Q 036662           36 PSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETI  115 (316)
Q Consensus        36 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~  115 (316)
                      ++.++||.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.++       +++|++ .+.+++.+|..|+||
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~-------v~~Ll~-~g~~~~~~~~~g~t~   75 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAV-------VEMLIM-RGARINVMNRGDDTP   75 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHH-------HHHHHH-TTCCTTCCCTTCCCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHH-------HHHHHH-cCCCCCCcCCCCCCH
Confidence            344555555555555555555555333234555555555555555555544       555555 445555555555555


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHH
Q 036662          116 LHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAW  178 (316)
Q Consensus       116 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL  178 (316)
                      ||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..++.++++       +++.+|..|.|||
T Consensus        76 L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl  142 (179)
T 3f6q_A           76 LHLAASHGHRDIVQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPV  142 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGG
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcH
Confidence            5555555555555555555555   5555555555555555555555554       4555555555553

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=3.7e-30  Score=212.15  Aligned_cols=174  Identities=21%  Similarity=0.200  Sum_probs=155.5

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhhCC-CcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCC
Q 036662           34 NCPSETPLHVAALLRHKDFAKEILRQKP-GIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWV  112 (316)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g  112 (316)
                      +..+.||||.|+..|+.+.++.|++.++ ++ +..|..|.||||+|+..|+.++       +++|++ .+.+++.+|..|
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~-------v~~Ll~-~g~~~~~~~~~g   72 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEI-------AKALID-RGADINLQNSIS   72 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCT-TCCCTTSCCHHHHHHHHTCHHH-------HHHHHH-TTCCTTCCCTTS
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCC-CCCCCCCCCHHHHHHHcCCHHH-------HHHHHH-cCCCCCCCCCCC
Confidence            4578999999999999999999999988 55 8899999999999999999988       999999 899999999999


Q ss_pred             CcHHHHHHhcCCHHHHHHHH-hcCCCccccccccCCCCcHHHHHHhcCCcceec--------ccccccCCCCCHHHHHHh
Q 036662          113 ETILHLCVKHNQLEALKVLL-ENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN--------QSECCYANGFTAWDILAN  183 (316)
Q Consensus       113 ~t~Lh~A~~~g~~~~v~~Ll-~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~--------~~~~~~~~g~TpL~~a~~  183 (316)
                      +||||+|+..|+.+++++|+ ..+.+   ++.+|..|+||||+|+..|+.++++        +++.+|..|.||||+|+.
T Consensus        73 ~t~l~~A~~~~~~~~~~~Ll~~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~  149 (201)
T 3hra_A           73 DSPYLYAGAQGRTEILAYMLKHATPD---LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG  149 (201)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCCC---TTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccCcc---cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHH
Confidence            99999999999999999999 55667   9999999999999999999999998        788999999999999998


Q ss_pred             ccC-CCcHHHHHHHHHHhCCCcccccCCccccccccc
Q 036662          184 SKR-KMKDWEIGELLRRAGAISAKEMQQPATKVSITQ  219 (316)
Q Consensus       184 ~~~-~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~  219 (316)
                      ... ..++.+++++|+++|++.+.....+.++...+.
T Consensus       150 ~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  186 (201)
T 3hra_A          150 LREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYAN  186 (201)
T ss_dssp             SSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             hccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHH
Confidence            321 112389999999999999988887777765543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=3.9e-31  Score=226.54  Aligned_cols=154  Identities=21%  Similarity=0.227  Sum_probs=140.3

Q ss_pred             CCcHHHHHHHc---CCHHHHHHHHHcChhhHHhh--------hcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCC
Q 036662            1 MESKLYEAALA---GSVTSLLEFLQKDRLILERA--------AMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDS   69 (316)
Q Consensus         1 m~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~--------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~   69 (316)
                      ++||||+|+..   |+.++|+.|++.++++....        ..|..|.||||+|+..|+.+++++|+++|+++ +.+|.
T Consensus        43 g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~  121 (256)
T 2etb_A           43 GKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRAC  121 (256)
T ss_dssp             TBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCC
T ss_pred             CCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-Ccccc
Confidence            47999999999   99999999999998764221        23467999999999999999999999999998 77777


Q ss_pred             C-------------CCcHHHHHHHcCCcccccccHHHHHHHHHh--CCCCcccccCCCCcHHHHHHh--cCCHH------
Q 036662           70 R-------------KSSALHIASQKRYVGMKSNRIDVLEELVRA--RPLAASAPLIWVETILHLCVK--HNQLE------  126 (316)
Q Consensus        70 ~-------------g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~--~~~~~~~~d~~g~t~Lh~A~~--~g~~~------  126 (316)
                      .             |.||||+|+..|+.++       +++|++.  .+++++.+|.+|+||||+|+.  +++.+      
T Consensus       122 ~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~-------v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~  194 (256)
T 2etb_A          122 GRFFQKHQGTCFYFGELPLSLAACTKQWDV-------VTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVI  194 (256)
T ss_dssp             SGGGSCCSSSCCCSCSSHHHHHHHTTCHHH-------HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHH
T ss_pred             cccccccccccccCCCCHHHHHHHcCCHHH-------HHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHH
Confidence            6             9999999999999988       9999996  788999999999999999999  88888      


Q ss_pred             -HHHHHHhcCCCcccc-------ccccCCCCcHHHHHHhcCCcceec
Q 036662          127 -ALKVLLENTDDSEFL-------NAKDDYGMSILHLAVADKQIEYYN  165 (316)
Q Consensus       127 -~v~~Ll~~g~~~~~~-------~~~d~~g~t~Lh~A~~~~~~~~v~  165 (316)
                       ++++|+++|++   +       +.+|.+|+||||+|+..|+.++++
T Consensus       195 ~iv~~Ll~~ga~---~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~  238 (256)
T 2etb_A          195 HMYDGLLQMGAR---LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR  238 (256)
T ss_dssp             HHHHHHHHHHHH---HSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcCCC---cccccccccccCCCCCCHHHHHHHhCCHHHHH
Confidence             99999999998   7       899999999999999999999887

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=2e-30  Score=208.41  Aligned_cols=130  Identities=25%  Similarity=0.271  Sum_probs=119.0

Q ss_pred             CHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHH
Q 036662           39 TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHL  118 (316)
Q Consensus        39 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~  118 (316)
                      ++|+.||..|+.++|+.||++|+++ +.+|.+|+||||+|+..++.++       ++.|++ .+.+++.+|.+|+||||+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv-n~~d~~g~t~l~~a~~~~~~~~-------~~~ll~-~gad~~~~d~~g~TpLh~   76 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADV-NASDSDGRTPLHHAAENGHKEV-------VKLLIS-KGADVNAKDSDGRTPLHH   76 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCCHHH-------HHHHHh-cccchhhhccCCCCHHHH
Confidence            4699999999999999999999998 9999999999999999999998       999999 899999999999999999


Q ss_pred             HHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHH
Q 036662          119 CVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDI  180 (316)
Q Consensus       119 A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~  180 (316)
                      |+.+|+.+++++|+++|++   +|.+|.+|+||||+|+..|+.++++       +++.+|.+|+||||+
T Consensus        77 A~~~g~~~~v~~Ll~~gad---vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~  142 (169)
T 4gpm_A           77 AAENGHKEVVKLLISKGAD---VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDL  142 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHcCCHHHHHHHHHCcCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            9999999999999999999   9999999999999999888777666       666667777777663

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=2.5e-30  Score=204.31  Aligned_cols=144  Identities=25%  Similarity=0.237  Sum_probs=137.1

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHH
Q 036662           37 SETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETIL  116 (316)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~L  116 (316)
                      ..||||.|+..|+.+++++|+++|+++ + .|..|.||||+|+..|+.++       +++|++ .+.+++.+|..|+|||
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~-------v~~Ll~-~g~~~~~~~~~g~t~L   71 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFST-------TEVLLR-AGVSRDARTKVDRTPL   71 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHH-------HHHHHT-TTCCTTCCCTTCCCHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCC-C-cCCCCCCHHHHHHHcCCHHH-------HHHHHH-cCCCCCCCCCCCCCHH
Confidence            468999999999999999999999987 4 68999999999999999988       999999 8889999999999999


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCc
Q 036662          117 HLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMK  189 (316)
Q Consensus       117 h~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~  189 (316)
                      |+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..|+.++++       +++.+|..|.||||+|+.    .+
T Consensus        72 ~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~----~~  144 (153)
T 1awc_B           72 HMAASEGHANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISID----NG  144 (153)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----TT
T ss_pred             HHHHHcChHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH----cC
Confidence            999999999999999999999   9999999999999999999999998       889999999999999999    89


Q ss_pred             HHHHHHHH
Q 036662          190 DWEIGELL  197 (316)
Q Consensus       190 ~~~i~~~L  197 (316)
                      +.+++++|
T Consensus       145 ~~~i~~~L  152 (153)
T 1awc_B          145 NEDLAEIL  152 (153)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHh
Confidence            99999987

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=2.6e-31  Score=236.17  Aligned_cols=161  Identities=15%  Similarity=0.032  Sum_probs=135.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCC---HHHHHHHHhhC-CCcccccCCCCCcHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRH---KDFAKEILRQK-PGIAGELDSRKSSALH   76 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~---~~~v~~Ll~~~-~~~~~~~d~~g~tpLh   76 (316)
                      ++||||+|+..|+.++|++|+++|+++   +.+|..|+||||+|+..|+   .++++.|++.+ +++ +.+|..|+||||
T Consensus       131 g~TpLh~Aa~~g~~~~v~~Ll~~Gad~---n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~-~~~d~~g~tpLh  206 (327)
T 1sw6_A          131 GNTPLHWLTSIANLELVKHLVKHGSNR---LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL-ILEDSMNRTILH  206 (327)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCT---TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG-GEECTTCCCHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccc-cCCCCCCCCHHH
Confidence            479999999999999999999999988   4569999999999999998   78899999987 555 899999999999


Q ss_pred             HHHH----cCCcccccccHHHHHHHHHhC-------------------CCCcccccCCCCcHHHHHHhcCCHHHHHHHHh
Q 036662           77 IASQ----KRYVGMKSNRIDVLEELVRAR-------------------PLAASAPLIWVETILHLCVKHNQLEALKVLLE  133 (316)
Q Consensus        77 ~A~~----~g~~~~~~~~~~iv~~Ll~~~-------------------~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  133 (316)
                      +|+.    .|+.++       +++|++..                   +.+++.+|..|+||||.|+.      +++|++
T Consensus       207 ~A~~~~~~~g~~~~-------v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~  273 (327)
T 1sw6_A          207 HIIITSGMTGCSAA-------AKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIA  273 (327)
T ss_dssp             HHHHHHTSTTCHHH-------HHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHH
T ss_pred             HHHHHccccccHHH-------HHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHH
Confidence            9999    777777       99998842                   78899999999999999996      899999


Q ss_pred             cCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHh
Q 036662          134 NTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILAN  183 (316)
Q Consensus       134 ~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~  183 (316)
                      +  +   +|.+|.+|+||||+|+..|+.++++       +++.+|.+|+||||+|++
T Consensus       274 ~--~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          274 N--M---LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             H--T---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC
T ss_pred             h--C---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHh
Confidence            7  4   8899999999999999999999999       899999999999999986

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=1.4e-30  Score=225.28  Aligned_cols=154  Identities=18%  Similarity=0.184  Sum_probs=138.9

Q ss_pred             CCcHHHHHHHc---CCHHHHHHHHHcChhhHH----hh----hcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCC
Q 036662            1 MESKLYEAALA---GSVTSLLEFLQKDRLILE----RA----AMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDS   69 (316)
Q Consensus         1 m~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~----~~----~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~   69 (316)
                      ++||||+|+..   |+.++|++|++.+++...    .+    ..|..|.||||+|+..|+.+++++|+++|+++ +.+|.
T Consensus        54 g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~  132 (273)
T 2pnn_A           54 GKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAAN  132 (273)
T ss_dssp             CCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBC
T ss_pred             CCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-Ccccc
Confidence            47999999987   999999999999876321    11    14668999999999999999999999999998 77776


Q ss_pred             --------------CCCcHHHHHHHcCCcccccccHHHHHHHHHh--CCCCcccccCCCCcHHHHHHhcCC---------
Q 036662           70 --------------RKSSALHIASQKRYVGMKSNRIDVLEELVRA--RPLAASAPLIWVETILHLCVKHNQ---------  124 (316)
Q Consensus        70 --------------~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~--~~~~~~~~d~~g~t~Lh~A~~~g~---------  124 (316)
                                    .|.||||+|+..|+.++       +++|++.  .+.+++.+|.+|+||||+|+..|+         
T Consensus       133 ~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~-------v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~  205 (273)
T 2pnn_A          133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAI-------VKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV  205 (273)
T ss_dssp             SGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH-------HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHH
T ss_pred             ccccccccccccccCCCCHHHHHHHcCCHHH-------HHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHH
Confidence                          79999999999999988       9999996  788999999999999999999998         


Q ss_pred             HHHHHHHHhcCCCccccc-------cccCCCCcHHHHHHhcCCcceec
Q 036662          125 LEALKVLLENTDDSEFLN-------AKDDYGMSILHLAVADKQIEYYN  165 (316)
Q Consensus       125 ~~~v~~Ll~~g~~~~~~~-------~~d~~g~t~Lh~A~~~~~~~~v~  165 (316)
                      .+++++|+++|++   +|       .+|.+|+||||+|+..|+.++++
T Consensus       206 ~~~v~~Ll~~ga~---~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~  250 (273)
T 2pnn_A          206 TSMYNEILILGAK---LHPTLKLEEITNRKGLTPLALAASSGKIGVLA  250 (273)
T ss_dssp             HHHHHHHHHHHHH---HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhhhh---cccccccccccCCCCCCHHHHHHHhChHHHHH
Confidence            8999999999988   65       58999999999999999999998

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=4.1e-30  Score=203.53  Aligned_cols=147  Identities=19%  Similarity=0.202  Sum_probs=138.1

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhhC-CCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcH
Q 036662           37 SETPLHVAALLRHKDFAKEILRQK-PGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETI  115 (316)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~  115 (316)
                      +.||||.|+..|+.++++.|++.. .++ +..|..|.||||+ +..|+.++       +++|++ .+.+++.+|..|+||
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~-~~~~~~~~-------v~~Ll~-~g~~~~~~~~~g~t~   71 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQV-MMFGSTAI-------ALELLK-QGASPNVQDTSGTSP   71 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCTTSCCHHHH-SCTTCHHH-------HHHHHH-TTCCTTCCCTTSCCH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCc-cccCCCCCcHHHH-HHcCCHHH-------HHHHHH-CCCCCCCcCCCCCCH
Confidence            568999999999999999999993 255 8899999999999 88888888       999999 889999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec------ccccccCCCCCHHHHHHhccCCCc
Q 036662          116 LHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN------QSECCYANGFTAWDILANSKRKMK  189 (316)
Q Consensus       116 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~------~~~~~~~~g~TpL~~a~~~~~~~~  189 (316)
                      ||+|+.+|+.+++++|+++|++   ++.+|.+|+||||+|+..|+.++++      +++.+|.+|.||||+|+.    .+
T Consensus        72 L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~g~t~l~~A~~----~~  144 (156)
T 1bd8_A           72 VHDAARTGFLDTLKVLVEHGAD---VNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQ----RG  144 (156)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHHH----SC
T ss_pred             HHHHHHcCcHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHhChHHHHHHHHhccCCCCcCCCCCCHHHHHHH----cC
Confidence            9999999999999999999999   9999999999999999999999998      789999999999999999    89


Q ss_pred             HHHHHHHHHHh
Q 036662          190 DWEIGELLRRA  200 (316)
Q Consensus       190 ~~~i~~~Ll~~  200 (316)
                      +.+++++|+++
T Consensus       145 ~~~~v~~Ll~~  155 (156)
T 1bd8_A          145 AQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHTT
T ss_pred             cHHHHHHHHhh
Confidence            99999999874

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=4.4e-30  Score=222.81  Aligned_cols=150  Identities=16%  Similarity=0.127  Sum_probs=141.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCh-hhHHhhhcCCCCCCHHHHHH-----hcCCHHHHHHHHhhCCCcccccCCCCCcH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDR-LILERAAMNCPSETPLHVAA-----LLRHKDFAKEILRQKPGIAGELDSRKSSA   74 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~g~t~Lh~A~-----~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp   74 (316)
                      ++||||+|+..|+.++|+.|++.++ ++   +..|..|.||||+|+     ..++.++++.|++.|.++ +..|..|+||
T Consensus       111 g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~---~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tp  186 (276)
T 4hbd_A          111 GNTALHYSVSHANFPVVQQLLDSGVCKV---DKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTA  186 (276)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTSCCCT---TCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCcC---CCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCH
Confidence            4799999999999999999999998 65   445899999999999     668999999999999887 8889999999


Q ss_pred             HHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHh-cCCCccccccccCCCCcHHH
Q 036662           75 LHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLE-NTDDSEFLNAKDDYGMSILH  153 (316)
Q Consensus        75 Lh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~d~~g~t~Lh  153 (316)
                      ||+|+..|+.++       +++|++ ++++++.+|.+|+||||+|+..|+.+++++|++ .|++   ++.+|.+|+||||
T Consensus       187 Lh~A~~~g~~~~-------v~~Ll~-~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad---~~~~d~~g~TpL~  255 (276)
T 4hbd_A          187 LMLAVSHGRVDV-------VKALLA-CEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD---ISLTDRDGSTALM  255 (276)
T ss_dssp             HHHHHHTTCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC---TTCCCTTSCCHHH
T ss_pred             HHHHHHcCCHHH-------HHHHHh-CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC---CcCcCCCCCCHHH
Confidence            999999999988       999999 899999999999999999999999999999999 8999   9999999999999


Q ss_pred             HHHhcCCcceec
Q 036662          154 LAVADKQIEYYN  165 (316)
Q Consensus       154 ~A~~~~~~~~v~  165 (316)
                      +|+..|+.++++
T Consensus       256 ~A~~~g~~~iv~  267 (276)
T 4hbd_A          256 VALDAGQSEIAS  267 (276)
T ss_dssp             HHHHHTCHHHHH
T ss_pred             HHHHcCCHHHHH
Confidence            999999998876

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=7.5e-31  Score=222.86  Aligned_cols=167  Identities=14%  Similarity=0.001  Sum_probs=120.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      +.||||.|++.|+.+.++.|+++|.++.    .+..|.||||+|+..|+.++++.|++.|+++ +.+|..|.||||+|+.
T Consensus         5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~----~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~   79 (239)
T 1ycs_B            5 GQVSLPPGKRTNLRKTGSERIAHGMRVK----FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVC   79 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHH
T ss_pred             ccccCchhhhhhhHHHHHHHhccCCCcc----cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence            4799999999999999999999998873    2577899999999999999999999999998 8999999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCC-cHHHHH--Hh
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGM-SILHLA--VA  157 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~-t~Lh~A--~~  157 (316)
                      .|+.++       +++|++ ++++++.+|..|+||||+|+.+|+.+++++|+++|++   ++.+|..|. ||||+|  +.
T Consensus        80 ~g~~~~-------v~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~t~l~~a~~~~  148 (239)
T 1ycs_B           80 AGHTEI-------VKFLVQ-FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA---VFAMTYSDMQTAADKCEEME  148 (239)
T ss_dssp             HTCHHH-------HHHHHH-HTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCSSSCCCHHHHCCSSS
T ss_pred             cCCHHH-------HHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---cceecCCCCcchHHHHHHhh
Confidence            999988       999999 7899999999999999999999999999999999999   999998877 999999  67


Q ss_pred             cCCcceec-------ccccc---------cCCCCCHHHHHHh
Q 036662          158 DKQIEYYN-------QSECC---------YANGFTAWDILAN  183 (316)
Q Consensus       158 ~~~~~~v~-------~~~~~---------~~~g~TpL~~a~~  183 (316)
                      .|+.++++       +++..         +..+.+|++++..
T Consensus       149 ~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~  190 (239)
T 1ycs_B          149 EGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMK  190 (239)
T ss_dssp             TTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBC
T ss_pred             hccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCccccc
Confidence            78888777       33333         5566777766655

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=1.9e-30  Score=222.62  Aligned_cols=154  Identities=17%  Similarity=0.151  Sum_probs=138.1

Q ss_pred             CCcHHHHHH---HcCCHHHHHHHHHcChhhHHh--------hhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccC-
Q 036662            1 MESKLYEAA---LAGSVTSLLEFLQKDRLILER--------AAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELD-   68 (316)
Q Consensus         1 m~t~L~~A~---~~g~~~~v~~Ll~~~~~~~~~--------~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d-   68 (316)
                      ++||||.|+   +.|+.++|+.|++.+++....        ...|..|+||||+|+..|+.++|++|+++|+++ +..| 
T Consensus        46 g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~  124 (260)
T 3jxi_A           46 GKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQAR  124 (260)
T ss_dssp             CCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCE
T ss_pred             CCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-Ccccc
Confidence            469999999   779999999999998753221        123448999999999999999999999999998 7777 


Q ss_pred             -------------CCCCcHHHHHHHcCCcccccccHHHHHHHHHh--CCCCcccccCCCCcHHHHHHhcCC---------
Q 036662           69 -------------SRKSSALHIASQKRYVGMKSNRIDVLEELVRA--RPLAASAPLIWVETILHLCVKHNQ---------  124 (316)
Q Consensus        69 -------------~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~--~~~~~~~~d~~g~t~Lh~A~~~g~---------  124 (316)
                                   ..|.||||+|+..|+.++       +++|++.  .+++++.+|..|+||||+|+..|+         
T Consensus       125 ~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~-------v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~  197 (260)
T 3jxi_A          125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHI-------VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFV  197 (260)
T ss_dssp             ECCCSSSCCCCSCCSCSSHHHHHHHTTCHHH-------HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHH
T ss_pred             ccccCcccccccccCCCCHHHHHHHcCCHHH-------HHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHH
Confidence                         689999999999999988       9999996  788999999999999999999887         


Q ss_pred             HHHHHHHHhcCCCcccc-------ccccCCCCcHHHHHHhcCCcceec
Q 036662          125 LEALKVLLENTDDSEFL-------NAKDDYGMSILHLAVADKQIEYYN  165 (316)
Q Consensus       125 ~~~v~~Ll~~g~~~~~~-------~~~d~~g~t~Lh~A~~~~~~~~v~  165 (316)
                      .+++++|+++|++   +       +.+|.+|+||||+|+..|+.++++
T Consensus       198 ~~~v~~Ll~~ga~---~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~  242 (260)
T 3jxi_A          198 TKMYDLLLIKCAK---LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ  242 (260)
T ss_dssp             HHHHHHHHHHHHH---HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhCcc---cccccchhhcccCCCCCHHHHHHHcCCHHHHH
Confidence            7999999999988   6       789999999999999999999887

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=3.4e-30  Score=210.34  Aligned_cols=153  Identities=11%  Similarity=0.088  Sum_probs=134.0

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCH----HHHHHHHhhCCCcccccCCCCCcHHHHH
Q 036662            3 SKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHK----DFAKEILRQKPGIAGELDSRKSSALHIA   78 (316)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh~A   78 (316)
                      ++|+.|++.|+.+.++.+++.+.+..+    +..|+||||+|+..|+.    +++++|+++|+++ +.+|..|+||||+|
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~~~----~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh~a   82 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYEDKE----SVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFFPL   82 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSCHH----HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCccccc----ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHHHH
Confidence            689999999999999999998764321    25799999999999975    5999999999999 99999999999999


Q ss_pred             HHcCCcccccccHHHHHHHHHhCCCCcccccCCCC-cHHHHHHhcC-----CHHHHHHHHh-cCCCccccccccCCCCcH
Q 036662           79 SQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVE-TILHLCVKHN-----QLEALKVLLE-NTDDSEFLNAKDDYGMSI  151 (316)
Q Consensus        79 ~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~g-----~~~~v~~Ll~-~g~~~~~~~~~d~~g~t~  151 (316)
                      +..|+.++ .+..+++++|++ .+++++.+|..|+ ||||+|+..+     +.+++++|++ +|++   ++.+|.+|+||
T Consensus        83 ~~~~~~~~-~~~~~iv~~Ll~-~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad---~~~~d~~G~Tp  157 (186)
T 3t8k_A           83 FQGGGNDI-TGTTELCKIFLE-KGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ---LLIKDKWGLTA  157 (186)
T ss_dssp             HHHCTTCH-HHHHHHHHHHHH-TTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC---TTCCCTTSCCH
T ss_pred             HHcCCcch-hhHHHHHHHHHH-CCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC---CcccCCCCCCH
Confidence            99997543 334566999999 8999999999999 9999999954     4579999999 9999   99999999999


Q ss_pred             HHHHHhcCCcceec
Q 036662          152 LHLAVADKQIEYYN  165 (316)
Q Consensus       152 Lh~A~~~~~~~~v~  165 (316)
                      ||+|+..++.++++
T Consensus       158 L~~A~~~~~~~~v~  171 (186)
T 3t8k_A          158 LEFVKRCQKPIALK  171 (186)
T ss_dssp             HHHHHTTTCHHHHH
T ss_pred             HHHHHHcCCHHHHH
Confidence            99999988877766

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=4.4e-31  Score=222.87  Aligned_cols=192  Identities=13%  Similarity=0.010  Sum_probs=158.7

Q ss_pred             HHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHH
Q 036662           17 LLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEE   96 (316)
Q Consensus        17 v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~   96 (316)
                      |+.|++++.+....+..+..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.++       +++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~-------v~~   72 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSI-------VDF   72 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHH-------HHH
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHH-------HHH
Confidence            46788888877555555677889999999999999999999999998 8899999999999999999988       999


Q ss_pred             HHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccccc-CCCCcHHHHH--HhcCCcceec-------c
Q 036662           97 LVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKD-DYGMSILHLA--VADKQIEYYN-------Q  166 (316)
Q Consensus        97 Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d-~~g~t~Lh~A--~~~~~~~~v~-------~  166 (316)
                      |++ .+.+++.+|..|+||||+|+..|+.+++++|+++|++   ++.+| .+|+||||+|  +..|+.++++       +
T Consensus        73 Ll~-~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~---~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~  148 (229)
T 2vge_A           73 LIT-AGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA---IFATTLSDGATAFEKCDPYREGYADCATYLADVEQS  148 (229)
T ss_dssp             HHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHH-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC
Confidence            999 8999999999999999999999999999999999999   99887 6999999999  9999999998       8


Q ss_pred             cccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCC--cccccCCccccccccccCcccccc
Q 036662          167 SECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAI--SAKEMQQPATKVSITQTNSLTSHG  227 (316)
Q Consensus       167 ~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~--~~~~~~~~~~~~~~~~~~~~~~~~  227 (316)
                      ++.+|..|.||++.+..    ..   ..++|++.|++  .+.....+.+++..+........+
T Consensus       149 ~~~~~~~~~~~l~~~~~----~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v  204 (229)
T 2vge_A          149 MGLMNSGAVYALWDYSA----EF---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV  204 (229)
T ss_dssp             TTTSGGGEEEESSCBCC----SS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEE
T ss_pred             cccccCCchHHHHHHhh----cc---ccccCccccccccccccCCCcccHHHHHHHcCCccee
Confidence            89999999999997555    22   23678889998  455666778888776665554444

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=2.5e-29  Score=199.36  Aligned_cols=139  Identities=15%  Similarity=0.133  Sum_probs=106.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCc-HHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSS-ALHIAS   79 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-pLh~A~   79 (316)
                      ++||||.|+..|+.++|++|++++.++   +.+|..|+||||+|+ .|+.+++++|+++|+++ +.+|..|.| |||+|+
T Consensus        12 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~A~   86 (156)
T 1bi7_B           12 SADWLATAAARGRVEEVRALLEAGANP---NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAA   86 (156)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCT---TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHH
T ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence            368999999999999999999988876   445888999999985 88999999999999988 888889998 999999


Q ss_pred             HcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHH
Q 036662           80 QKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLA  155 (316)
Q Consensus        80 ~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A  155 (316)
                      ..|+.++       +++|++ ++++++.+|..|+||||+|+..|+.+++++|+++|++   ++.+|..|.||.+-+
T Consensus        87 ~~~~~~~-------v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           87 REGFLDT-------LVVLHR-AGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG---TRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHTCHHH-------HHHHHH-HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------------------
T ss_pred             HCCCHHH-------HHHHHH-cCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC---CCccCcCcCcccccC
Confidence            8888888       999998 6888888899999999999999999999999999988   888888898887743

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=2.3e-29  Score=213.60  Aligned_cols=157  Identities=15%  Similarity=0.052  Sum_probs=114.5

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCC
Q 036662           34 NCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVE  113 (316)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~  113 (316)
                      +..|.||||.|+..|+.+.++.|+++|+++ +. +..|.||||.|+..|+.++       ++.|++ .+.+++.+|..|+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~~-~~~~~t~L~~A~~~g~~~~-------v~~Ll~-~g~~~~~~d~~g~   71 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV-KF-NPLPLALLLDSSLEGEFDL-------VQRIIY-EVDDPSLPNDEGI   71 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHH-------HHHHTS-TTSSCCCCCTTSC
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCc-cc-CchhhHHHHHHHHcCCHHH-------HHHHHH-cCCCCCCcCCCCC
Confidence            346999999999999999999999999998 53 5789999999999999998       999999 7889999999999


Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCC-CHHHHH--Hh
Q 036662          114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGF-TAWDIL--AN  183 (316)
Q Consensus       114 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~-TpL~~a--~~  183 (316)
                      ||||+|+.+|+.+++++|+++|++   +|.+|.+|+||||+|+..|+.++++       +++.+|..|. ||||+|  +.
T Consensus        72 t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~  148 (239)
T 1ycs_B           72 TALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEME  148 (239)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSS
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhh
Confidence            999999999999999999999999   9999999999999999999999998       8999998887 999998  45


Q ss_pred             ccCCCcHHHHHHHHHHhCCCcccc
Q 036662          184 SKRKMKDWEIGELLRRAGAISAKE  207 (316)
Q Consensus       184 ~~~~~~~~~i~~~Ll~~ga~~~~~  207 (316)
                          .++.+++++|+++|++.+..
T Consensus       149 ----~g~~~~~~~Ll~~~a~~~~~  168 (239)
T 1ycs_B          149 ----EGYTQCSQFLYGVQEKMGIM  168 (239)
T ss_dssp             ----TTCCCHHHHHHHHHHHTTTT
T ss_pred             ----hccHHHHHHHHHhhhccccc
Confidence                68899999999999988654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=4e-28  Score=187.86  Aligned_cols=122  Identities=18%  Similarity=0.201  Sum_probs=72.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCC-CCcHHHHHHH
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSR-KSSALHIASQ   80 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-g~tpLh~A~~   80 (316)
                      +||||.|+..|+.+++++|++++.++   +.+|..|+||||+|+. |+.+++++|+++|+++ +.+|.. |.||||+|+.
T Consensus        13 ~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~   87 (136)
T 1d9s_A           13 DAGLATAAARGQVETVRQLLEAGADP---NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPVHDAAR   87 (136)
T ss_dssp             SCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHHHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCc---CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHHHHHHH
Confidence            45666666666666666666665544   2235556666666666 6666666666666665 555555 5666666666


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTD  136 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~  136 (316)
                      .|+.++       +++|++ .+.+++.+|..|+||||+|+.+|+.+++++|+++|+
T Consensus        88 ~~~~~~-------v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           88 EGFLDT-------LVVLHR-AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG  135 (136)
T ss_dssp             HTCHHH-------HHHHHH-TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred             cCCHHH-------HHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            555555       666665 555555556666666666666666666666665554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=3.1e-28  Score=188.45  Aligned_cols=130  Identities=16%  Similarity=0.149  Sum_probs=115.2

Q ss_pred             hhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccC
Q 036662           31 AAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLI  110 (316)
Q Consensus        31 ~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~  110 (316)
                      +.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+. |+.++       +++|++ .+.+++.+|.
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~-------v~~Ll~-~g~~~~~~~~   75 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQV-------AELLLL-HGAEPNCADP   75 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHH-------HHHHHH-HTCCSSCCBT
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHH-------HHHHHH-CCCCCCCcCC
Confidence            445889999999999999999999999999998 8899999999999999 99888       999999 7888999999


Q ss_pred             C-CCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceecccccccCCCCCHHHHHHhccCCCc
Q 036662          111 W-VETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANGFTAWDILANSKRKMK  189 (316)
Q Consensus       111 ~-g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~~~~~~~~g~TpL~~a~~~~~~~~  189 (316)
                      . |+||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..+                              
T Consensus        76 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~------------------------------  122 (136)
T 1d9s_A           76 ATLTRPVHDAAREGFLDTLVVLHRAGAR---LDVCDAWGRLPVDLAEEQG------------------------------  122 (136)
T ss_dssp             TTTBCHHHHHHHHTCHHHHHHHHHTCCC---CCCCSSSSSCHHHHHHHHT------------------------------
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcC------------------------------
Confidence            9 99999999999999999999999998   8888777777777776644                              


Q ss_pred             HHHHHHHHHHhCCC
Q 036662          190 DWEIGELLRRAGAI  203 (316)
Q Consensus       190 ~~~i~~~Ll~~ga~  203 (316)
                      +.+++++|+++|++
T Consensus       123 ~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          123 HRDIARYLHAATGD  136 (136)
T ss_dssp             CHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            45677888887775

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.95  E-value=1.5e-29  Score=215.50  Aligned_cols=145  Identities=17%  Similarity=0.077  Sum_probs=133.8

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCccccc-CCC
Q 036662           34 NCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPL-IWV  112 (316)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d-~~g  112 (316)
                      +..|.||||+|+..|+.++++.|++ |+++ +.+|..|+||||+|+..|+.++       +++|++ ++.+++.+| ..|
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~g~~~~-------v~~Ll~-~ga~~~~~~~~~g  111 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKC-------VRLLAE-AGADLDHRDMRGG  111 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHHHHTCHHH-------HHHHHH-TTCCTTCCCSSSC
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHHHCCCHHH-------HHHHHH-cCCCCCcCCCCCC
Confidence            4568999999999999999999999 9998 8999999999999999999988       999999 889998888 889


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceecccccccCCCCCHHHHHHhccCCCcHHH
Q 036662          113 ETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANGFTAWDILANSKRKMKDWE  192 (316)
Q Consensus       113 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~~~~~~~~g~TpL~~a~~~~~~~~~~~  192 (316)
                      +||||+|+.+|+.+++++|+++|++   ++.+|..|+||||+|+..++          +..+.|||++|+.    .++.+
T Consensus       112 ~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g~t~l~~A~~~~~----------~~~~~~~l~~a~~----~g~~~  174 (244)
T 3ui2_A          112 LTALHMAAGYVRPEVVEALVELGAD---IEVEDERGLTALELAREILK----------TTPKGNPMQFGRR----IGLEK  174 (244)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHHT----------TCCCSSHHHHHHH----HHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCcHHHHHHHHHh----------ccCCCCHHHHHHH----cChHH
Confidence            9999999999999999999999999   99999999999999998553          3578999999999    89999


Q ss_pred             HHHHHHHhCCCcc
Q 036662          193 IGELLRRAGAISA  205 (316)
Q Consensus       193 i~~~Ll~~ga~~~  205 (316)
                      ++++|++++.+..
T Consensus       175 iv~~L~~~~~~~~  187 (244)
T 3ui2_A          175 VINVLEGQVFEYA  187 (244)
T ss_dssp             HHHHHHHHHEEEE
T ss_pred             HHHHHHHhccccc
Confidence            9999999876543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=2e-27  Score=183.85  Aligned_cols=122  Identities=19%  Similarity=0.224  Sum_probs=81.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      .||||+|+..|+.+++++|++++.++   +.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus        15 ~t~l~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           15 GKKLLEAARAGQDDEVRILMANGADV---NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             cHHHHHHHHhCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHc
Confidence            36677777777777777777666655   333666677777777777777777777776666 66666677777777766


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcC
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENT  135 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g  135 (316)
                      |+.++       +++|++ .+.+++.+|.+|+||||+|+.+|+.+++++|+++|
T Consensus        91 ~~~~~-------v~~Ll~-~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           91 GHLEI-------AEVLLK-HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCHHH-------HHHHHH-cCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            66666       677666 56666666666777777777777777777766654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.95  E-value=3.7e-28  Score=192.51  Aligned_cols=136  Identities=15%  Similarity=0.063  Sum_probs=110.9

Q ss_pred             cCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCC
Q 036662           33 MNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWV  112 (316)
Q Consensus        33 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g  112 (316)
                      .+..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+ .|+.++       +++|++ .+.+++.+|..|
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~-------v~~Ll~-~g~~~~~~d~~g   77 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARV-------AELLLL-HGAEPNCADPAT   77 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHH-------HHHHHT-TTCCCCCCCTTT
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHH-------HHHHHH-cCCCCCCcCCCC
Confidence            4778999999999999999999999999998 889999999999985 777777       999999 889999999999


Q ss_pred             Cc-HHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHH
Q 036662          113 ET-ILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDIL  181 (316)
Q Consensus       113 ~t-~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a  181 (316)
                      +| |||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..|+.++++       +++.+|..|.||.+-+
T Consensus        78 ~ttpL~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B           78 LTRPVHDAAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             CcHHHHHHHHCCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            99 99999999999999999999999   9999999999999999988887777       6777777777777643

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=9.1e-27  Score=176.95  Aligned_cols=125  Identities=25%  Similarity=0.275  Sum_probs=116.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      ++||||.|++.|+.+++++|++++.++   +..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCC---CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHH
Confidence            579999999999999999999999877   445889999999999999999999999999998 8899999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDD  137 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~  137 (316)
                      .|+.++       +++|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus        78 ~~~~~~-------~~~Ll~-~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           78 NGHLEV-------VKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             cChHHH-------HHHHHH-cCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999888       999999 8888999999999999999999999999999999975

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=2.7e-27  Score=192.66  Aligned_cols=140  Identities=16%  Similarity=0.102  Sum_probs=130.2

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCccccc-CCC
Q 036662           34 NCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPL-IWV  112 (316)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d-~~g  112 (316)
                      +..|.||||+|+..|+.++++.|++ |+++ +.+|..|+||||+|+..|+.++       +++|++ ++.+++.+| ..|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~-------v~~Ll~-~ga~~~~~~~~~g  110 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKC-------VRLLAE-AGADLDHRDMRGG  110 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHH-------HHHHHH-TTCCTTCCCSSSS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHH-------HHHHHH-cCCCCCcCCCCCC
Confidence            4578999999999999999999999 9988 8899999999999999999988       999999 888998888 899


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceecccccccCCCCCHHHHHHhccCCCcHHH
Q 036662          113 ETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANGFTAWDILANSKRKMKDWE  192 (316)
Q Consensus       113 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~~~~~~~~g~TpL~~a~~~~~~~~~~~  192 (316)
                      +||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..++.          ..+.+||++|+.    .+..+
T Consensus       111 ~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~----------~~~~~~l~~a~~----~~~~~  173 (183)
T 3deo_A          111 LTALHMAAGYVRPEVVEALVELGAD---IEVEDERGLTALELAREILKT----------TPKGNPMQFGRR----IGLEK  173 (183)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHHHHT----------CCCCSHHHHHHH----HHHHH
T ss_pred             CCHHHHHHhcCcHHHHHHHHHcCCC---CcCCCCCCCCHHHHHHHhccC----------cccccHHHHHHH----cCHHH
Confidence            9999999999999999999999999   999999999999999997654          457899999999    89999


Q ss_pred             HHHHHHHh
Q 036662          193 IGELLRRA  200 (316)
Q Consensus       193 i~~~Ll~~  200 (316)
                      ++++|.++
T Consensus       174 i~~~L~~~  181 (183)
T 3deo_A          174 VINVLEGQ  181 (183)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            99999764

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=4.4e-28  Score=197.83  Aligned_cols=155  Identities=14%  Similarity=-0.010  Sum_probs=134.2

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHH
Q 036662           37 SETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETIL  116 (316)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~L  116 (316)
                      +.++||.|+..|+.+.++.+++.+.+.  ..|..|+||||+|+..|+.+   ++.+++++|++ .+++++.+|.+|+|||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~---~~~~iv~~Ll~-~Gadvn~~d~~g~TpL   79 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDE---ARYKISMFLIN-KGADIKSRTKEGTTLF   79 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHH---HHHHHHHHHHH-TTCCSSCCCTTCCCTH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcc---hHHHHHHHHHH-CCCCCCCCCCCCCcHH
Confidence            568899999999999999999988653  22378999999999999753   12345999999 9999999999999999


Q ss_pred             HHHHhcCC------HHHHHHHHhcCCCccccccccCCCC-cHHHHHHhcCCc-----ceec--------ccccccCCCCC
Q 036662          117 HLCVKHNQ------LEALKVLLENTDDSEFLNAKDDYGM-SILHLAVADKQI-----EYYN--------QSECCYANGFT  176 (316)
Q Consensus       117 h~A~~~g~------~~~v~~Ll~~g~~~~~~~~~d~~g~-t~Lh~A~~~~~~-----~~v~--------~~~~~~~~g~T  176 (316)
                      |+|+..|+      .+++++|+++|++   +|.+|.+|+ ||||+|+..+..     ++++        +++.+|..|+|
T Consensus        80 h~a~~~~~~~~~~~~~iv~~Ll~~Gad---in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~T  156 (186)
T 3t8k_A           80 FPLFQGGGNDITGTTELCKIFLEKGAD---ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLT  156 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCC---SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCC
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHCCCC---CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCC
Confidence            99999987      6889999999999   999999999 999999996543     2433        89999999999


Q ss_pred             HHHHHHhccCCCcHHHHHHHHHHhCCCc
Q 036662          177 AWDILANSKRKMKDWEIGELLRRAGAIS  204 (316)
Q Consensus       177 pL~~a~~~~~~~~~~~i~~~Ll~~ga~~  204 (316)
                      |||+|++    .++.+++++|.++..+.
T Consensus       157 pL~~A~~----~~~~~~v~~L~~~~~~~  180 (186)
T 3t8k_A          157 ALEFVKR----CQKPIALKMMEDYIKKY  180 (186)
T ss_dssp             HHHHHHT----TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHH----cCCHHHHHHHHHHHHHH
Confidence            9999999    89999999999776544

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=2.9e-26  Score=174.17  Aligned_cols=126  Identities=33%  Similarity=0.407  Sum_probs=112.8

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcH
Q 036662           36 PSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETI  115 (316)
Q Consensus        36 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~  115 (316)
                      +|+||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.++       +++|++ .+.+++.+|..|+||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~-------~~~Ll~-~g~~~~~~~~~g~t~   71 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEV-------VKLLLE-AGADVNAKDKNGRTP   71 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHH-------HHHHHH-TTCCTTCCCTTSCCH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHH-------HHHHHH-cCCCCcccCCCCCcH
Confidence            5899999999999999999999999998 8899999999999999999988       999999 888999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceecccccccCCCCCHHHHHHhccCCCcHHHHHH
Q 036662          116 LHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANGFTAWDILANSKRKMKDWEIGE  195 (316)
Q Consensus       116 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~  195 (316)
                      ||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+.                              .++.++++
T Consensus        72 l~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~l~~A~~------------------------------~~~~~~~~  118 (126)
T 1n0r_A           72 LHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAAR------------------------------NGHLEVVK  118 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHH------------------------------TTCHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHcCCC---CcccCCCCCCHHHHHHH------------------------------cCcHHHHH
Confidence            9999999999999999999988   77777766666666655                              45567888


Q ss_pred             HHHHhCCC
Q 036662          196 LLRRAGAI  203 (316)
Q Consensus       196 ~Ll~~ga~  203 (316)
                      +|+++|++
T Consensus       119 ~Ll~~Gad  126 (126)
T 1n0r_A          119 LLLEAGAY  126 (126)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHcCCC
Confidence            88888875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=1.8e-26  Score=183.49  Aligned_cols=125  Identities=16%  Similarity=0.098  Sum_probs=115.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      ++||||.|+. |+.+++++|++.+.++   +.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus        38 g~t~L~~A~~-~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~  112 (162)
T 1ihb_A           38 GRTALQVMKL-GNPEIARRLLLRGANP---DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAK  112 (162)
T ss_dssp             SCCHHHHCCS-SCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHc-CcHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence            4799999999 9999999999999887   445899999999999999999999999999998 8999999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDD  137 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~  137 (316)
                      .|+.++       +++|++.....++.+|..|+||||+|+.+|+.+++++|+++|+|
T Consensus       113 ~~~~~~-------v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          113 EGHLRV-------VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             TTCHHH-------HHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             cCCHHH-------HHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999988       99999966556799999999999999999999999999999975

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.94  E-value=5.2e-29  Score=224.51  Aligned_cols=145  Identities=10%  Similarity=-0.027  Sum_probs=118.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcc--cccCCCCCcHHHHHH
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIA--GELDSRKSSALHIAS   79 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~~d~~g~tpLh~A~   79 (316)
                      +||||.|++.|+.++|++|+++++........+..|.||||+|+..|+.++|++|+++|+++.  +..+.+ .||||+|+
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa  171 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAA  171 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHH
Confidence            489999999999999999999987221111235568899999999999999999999998621  222223 99999999


Q ss_pred             HcCCcccccccHHHHHHHHHhCCCCccc--ccCCCCcHHHHHH-hcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 036662           80 QKRYVGMKSNRIDVLEELVRARPLAASA--PLIWVETILHLCV-KHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV  156 (316)
Q Consensus        80 ~~g~~~~~~~~~~iv~~Ll~~~~~~~~~--~d~~g~t~Lh~A~-~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~  156 (316)
                      ..|+.++       +++|++ .+.+++.  .|..|+||||+|+ .+|+.++|++|++.|++          |+||||+|+
T Consensus       172 ~~G~~ei-------v~~Ll~-~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~----------~~taL~~Aa  233 (376)
T 2aja_A          172 ENGHLHV-------LNRLCE-LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM----------LAYAEIHEF  233 (376)
T ss_dssp             HTTCHHH-------HHHHHH-SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH----------HHHHHHCTT
T ss_pred             HCCCHHH-------HHHHHH-cCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc----------cchHHHHHH
Confidence            9999998       999999 7777776  7889999999999 99999999999996632          789999999


Q ss_pred             hcCCcceec
Q 036662          157 ADKQIEYYN  165 (316)
Q Consensus       157 ~~~~~~~v~  165 (316)
                      ..|+.++++
T Consensus       234 ~~g~~evv~  242 (376)
T 2aja_A          234 EYGEKYVNP  242 (376)
T ss_dssp             TTTTTTHHH
T ss_pred             HCCCHHHHH
Confidence            988888777

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=1.1e-26  Score=179.72  Aligned_cols=119  Identities=20%  Similarity=0.236  Sum_probs=108.3

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCC
Q 036662           34 NCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVE  113 (316)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~  113 (316)
                      ...+.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.++       +++|++ .+.+++.+|..|+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~-------v~~Ll~-~g~~~~~~d~~g~   81 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEI-------VEVLLK-NGADVNAVDAIGF   81 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHH-------HHHHHH-TTCCTTCCCTTCC
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHH-------HHHHHH-cCCCCCcCCCCCC
Confidence            567899999999999999999999999998 8899999999999999999988       999999 8899999999999


Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCccee
Q 036662          114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYY  164 (316)
Q Consensus       114 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v  164 (316)
                      ||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..++.+++
T Consensus        82 t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~tpl~~A~~~~~~~~~  129 (136)
T 2jab_A           82 TPLHLAAFIGHLEIAEVLLKHGAD---VNAQDKFGKTAFDISIGNGNEDLA  129 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC---CcCcCCCCCCHHHHHHHCCCHHHH
Confidence            999999999999999999999998   888888888888888776655443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=6.3e-27  Score=181.22  Aligned_cols=121  Identities=18%  Similarity=0.187  Sum_probs=112.4

Q ss_pred             cCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCC
Q 036662           33 MNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWV  112 (316)
Q Consensus        33 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g  112 (316)
                      +|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.++       +++|++ .+.+++.+|..|
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~-------~~~Ll~-~g~~~~~~~~~g   76 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKV-------VELLLQ-HKALVNTTGYQN   76 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHH-------HHHHHH-TTCCTTCCCGGG
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHH-------HHHHHH-cCCcccCcCCCC
Confidence            5889999999999999999999999999998 8899999999999999999988       999999 899999999999


Q ss_pred             CcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec
Q 036662          113 ETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN  165 (316)
Q Consensus       113 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  165 (316)
                      +||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..+..++++
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~l~  126 (137)
T 3c5r_A           77 DSPLHDAAKNGHVDIVKLLLSYGAS---RNAVNIFGLRPVDYTDDESMKSLLL  126 (137)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCGGGGCCCHHHHHHHS
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHhhccHHHHHh
Confidence            9999999999999999999999999   9999999999999988776665543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.93  E-value=1.8e-26  Score=202.37  Aligned_cols=141  Identities=18%  Similarity=0.125  Sum_probs=101.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcChhhHHhh---hcCCCCCCHHHHHHhc---CCHHHHHHHHhhCCCcccccCCCCCcHHH
Q 036662            3 SKLYEAALAGSVTSLLEFLQKDRLILERA---AMNCPSETPLHVAALL---RHKDFAKEILRQKPGIAGELDSRKSSALH   76 (316)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh   76 (316)
                      ++|+.|+..|+.+.|+.|++.++++....   ..+..|.||||+|+..   |+.+++++|+++|+++ +.+|..|+||||
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~TpLh  231 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTALH  231 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCHHH
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCHHH
Confidence            45888888888888888888777653210   0366788888888876   7788888888888887 777888888888


Q ss_pred             HHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 036662           77 IASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV  156 (316)
Q Consensus        77 ~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~  156 (316)
                      +|+..|+.++       +++|++ .+++++.+|.+|+||||+|+..|+.+++++|+++|++         .|.||||+|+
T Consensus       232 ~A~~~g~~~~-------v~~Ll~-~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---------~g~tpLh~A~  294 (301)
T 2b0o_E          232 YAALYNQPDC-------LKLLLK-GRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG---------TFAFPLHVDY  294 (301)
T ss_dssp             HHHHTTCHHH-------HHHHHH-TTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---------TTSSCCC---
T ss_pred             HHHHcCCHHH-------HHHHHH-cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---------CCCChhHHHH
Confidence            8888877777       888888 7777888888888888888888888888888877653         4678888888


Q ss_pred             hcCCc
Q 036662          157 ADKQI  161 (316)
Q Consensus       157 ~~~~~  161 (316)
                      ..|+.
T Consensus       295 ~~g~~  299 (301)
T 2b0o_E          295 SWVIS  299 (301)
T ss_dssp             -----
T ss_pred             hcCCc
Confidence            77653

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=1.3e-26  Score=176.07  Aligned_cols=117  Identities=17%  Similarity=0.122  Sum_probs=103.7

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCC
Q 036662           34 NCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVE  113 (316)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~  113 (316)
                      +..|.||||+|+..|+.++++.|++.|+++ +.+|..|+||||+|+..|+.++       +++|++ .+.+++.+|..|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~-------v~~Ll~-~g~~~~~~d~~g~   74 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEI-------LEFLLL-KGADINAPDKHHI   74 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHH-------HHHHHT-TTCCTTCCCTTSC
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHH-------HHHHHH-cCCCCCcCCCCCC
Confidence            567889999999999999999999999998 8889999999999999999888       999998 8888999999999


Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcc
Q 036662          114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE  162 (316)
Q Consensus       114 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~  162 (316)
                      ||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|...+..+
T Consensus        75 tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           75 TPLLSAVYEGHVSCVKLLLSKGAD---KTVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHCCCHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHhCCHHHHH
Confidence            999999999999999999999999   8999999999999986554443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=8.5e-26  Score=174.81  Aligned_cols=124  Identities=20%  Similarity=0.159  Sum_probs=112.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      ++||||.|+..|+.+++++|++.+.++   +.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus        10 g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~   85 (137)
T 3c5r_A           10 GETLLHIASIKGDIPSVEYLLQNGSDP---NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDAAK   85 (137)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC---CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHHHHH
Confidence            479999999999999999999999887   445899999999999999999999999999998 8899999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTD  136 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~  136 (316)
                      .|+.++       +++|++ .+.+++.+|..|+||||+|+..+..+++++|.+.+.
T Consensus        86 ~~~~~~-------v~~Ll~-~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           86 NGHVDI-------VKLLLS-YGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             TTCHHH-------HHHHHH-TTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             cCCHHH-------HHHHHH-cCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            999988       999999 899999999999999999999999999988877654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=2.1e-25  Score=169.31  Aligned_cols=115  Identities=14%  Similarity=0.072  Sum_probs=105.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      ++||||.|+..|+.++++.|++.+.++   +.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+.
T Consensus         7 ~~~~l~~A~~~~~~~~v~~ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            7 CDKEFMWALKNGDLDEVKDYVAKGEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVY   82 (123)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCT---TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCc---CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHH
Confidence            368999999999999999999999877   445889999999999999999999999999998 8999999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHH
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEA  127 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~  127 (316)
                      .|+.++       +++|++ .+.+++.+|.+|+||||+|...+..++
T Consensus        83 ~~~~~~-------v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           83 EGHVSC-------VKLLLS-KGADKTVKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             HTCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred             cCCHHH-------HHHHHH-cCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence            999988       999999 789999999999999999965544444

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=1.2e-25  Score=188.35  Aligned_cols=121  Identities=18%  Similarity=0.186  Sum_probs=80.8

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCC
Q 036662           34 NCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVE  113 (316)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~  113 (316)
                      +..|.||||+|+..|+.++++.|++.|+++ +.+|..|+||||+|+..|+.++       +++|++..+.+++.+|..|+
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~-------v~~Ll~~~g~~~~~~d~~g~  141 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDI-------VEMLFTQPNIELNQQNKLGD  141 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHH-------HHHHTTSTTCCCCCCCTTSC
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHH-------HHHHHcCCCCCccccCCCCC
Confidence            455666666666666666666666666665 6666666666666666666666       66666633666666666666


Q ss_pred             cHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec
Q 036662          114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN  165 (316)
Q Consensus       114 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  165 (316)
                      ||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..++.++++
T Consensus       142 tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~l~  190 (222)
T 3ehr_A          142 TALHAAAWKGYADIVQLLLAKGAR---TDLRNIEKKLAFDMATNAACASLLK  190 (222)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCC---SCCCCTTSCCHHHHCCSHHHHHHHC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC---CccccCCCCCHHHHhcchhHHHHHH
Confidence            666666666666666666666666   6666666666666666666666655

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.92  E-value=2.6e-27  Score=213.43  Aligned_cols=178  Identities=13%  Similarity=0.001  Sum_probs=139.9

Q ss_pred             HHHHHHH-cCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcc--cccCCCCCcHHHHHHH
Q 036662            4 KLYEAAL-AGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIA--GELDSRKSSALHIASQ   80 (316)
Q Consensus         4 ~L~~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~~d~~g~tpLh~A~~   80 (316)
                      +++.|.. .++.+.++++++++.          +++||||+|+..|+.++|++|+++|+...  ...|..|.||||+|+.
T Consensus        68 ~~~~a~~~~~~~~~~~~l~~~g~----------~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~  137 (376)
T 2aja_A           68 CLYYAHYNRNAKQLWSDAHKKGI----------KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE  137 (376)
T ss_dssp             HHHHHHTTTTCTTHHHHHHHHTC----------CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHcCC----------CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHH
Confidence            3444444 356666666665543          45699999999999999999999998321  2345678899999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCC---cccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccc--ccCCCCcHHHHH
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLA---ASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNA--KDDYGMSILHLA  155 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~---~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~--~d~~g~t~Lh~A  155 (316)
                      .|+.++       +++|++ .+++   .+..+.+ +||||+|+.+|+.++|++|+++|++   ++.  +|.+|+||||+|
T Consensus       138 ~G~~ei-------v~~Ll~-~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~---~~~~~~d~~g~TpL~~A  205 (376)
T 2aja_A          138 NGHLHV-------LNRLCE-LAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPT---EATAMIQAENYYAFRWA  205 (376)
T ss_dssp             TTCHHH-------HHHHHH-SCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGG---GHHHHHHHHHHHHHHHH
T ss_pred             cCCHHH-------HHHHHh-CCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCc---cchhccCCCCCCHHHHH
Confidence            999999       999999 5543   2222233 9999999999999999999999998   777  899999999999


Q ss_pred             H-hcCCcceecccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccc
Q 036662          156 V-ADKQIEYYNQSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKE  207 (316)
Q Consensus       156 ~-~~~~~~~v~~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~  207 (316)
                      + ..|+.++++-+-.....|.|||++|+.    .++.+++++|+++|++.+..
T Consensus       206 a~~~G~~eiv~~Ll~~ga~~~taL~~Aa~----~g~~evv~lL~~~ga~~~~~  254 (376)
T 2aja_A          206 AVGRGHHNVINFLLDCPVMLAYAEIHEFE----YGEKYVNPFIARHVNRLKEM  254 (376)
T ss_dssp             HSTTCCHHHHHHHTTSHHHHHHHHHCTTT----TTTTTHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHhCCCccchHHHHHHH----CCCHHHHHHHHhcCcccccc
Confidence            9 999999999111123358999999999    89999999999999887543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=1.2e-25  Score=188.28  Aligned_cols=125  Identities=20%  Similarity=0.192  Sum_probs=100.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhh-CCCcccccCCCCCcHHHHHHH
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQ-KPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      +||||+|+..|+.++|+.|++.+.++   +.+|..|+||||+|+..|+.+++++|+++ |+++ +.+|..|+||||+|+.
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           74 DNPLHEAAKRGNLSWLRECLDNRVGV---NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAW  149 (222)
T ss_dssp             SCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHH
T ss_pred             ccccccccccCcHHHHHHHHhCCCCc---cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHH
Confidence            68899999999999999999888876   44578889999999999999999999988 8887 8888889999999998


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCc
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDS  138 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~  138 (316)
                      .|+.++       +++|++ .+++++.+|.+|+||||+|+..|+.++++.|++.|++.
T Consensus       150 ~~~~~~-------v~~Ll~-~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~  199 (222)
T 3ehr_A          150 KGYADI-------VQLLLA-KGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR  199 (222)
T ss_dssp             HTCHHH-------HHHHHH-HTCCSCCCCTTSCCHHHHCCSHHHHHHHC---------
T ss_pred             cCCHHH-------HHHHHH-cCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhh
Confidence            888887       899888 68888888889999999999888899999988888873

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=2.5e-25  Score=189.39  Aligned_cols=131  Identities=19%  Similarity=0.110  Sum_probs=118.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccC-CCCCcHHHHHHH
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELD-SRKSSALHIASQ   80 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~   80 (316)
                      +||||.|++.|+.++|+.|++ +.++   +.+|..|+||||+|+..|+.++|++|+++|+++ +.+| ..|+||||+|+.
T Consensus        46 ~t~L~~A~~~g~~~~v~~Ll~-~~~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           46 ETPWWTAARKADEQALSQLLE-DRDV---DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHTTTCHHHHHHTTT-TCCT---TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHc-CCCC---CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHH
Confidence            589999999999999999999 7766   455899999999999999999999999999999 6666 889999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ  160 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  160 (316)
                      .|+.++       +++|++ ++++++.+|..|+||||+|+..+                    .+..+.||||+|+..|+
T Consensus       121 ~g~~~~-------v~~Ll~-~ga~~~~~d~~g~t~l~~A~~~~--------------------~~~~~~~~l~~a~~~g~  172 (244)
T 3ui2_A          121 YVRPEV-------VEALVE-LGADIEVEDERGLTALELAREIL--------------------KTTPKGNPMQFGRRIGL  172 (244)
T ss_dssp             TTCHHH-------HHHHHH-TTCCTTCCCTTCCCHHHHHHHHH--------------------TTCCCSSHHHHHHHHHH
T ss_pred             cCCHHH-------HHHHHH-CCCCCCCCCCCCCcHHHHHHHHH--------------------hccCCCCHHHHHHHcCh
Confidence            999988       999999 89999999999999999998622                    12468999999999999


Q ss_pred             cceec
Q 036662          161 IEYYN  165 (316)
Q Consensus       161 ~~~v~  165 (316)
                      .++++
T Consensus       173 ~~iv~  177 (244)
T 3ui2_A          173 EKVIN  177 (244)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88877

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=2.6e-25  Score=180.87  Aligned_cols=131  Identities=18%  Similarity=0.102  Sum_probs=116.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccC-CCCCcHHHHHHH
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELD-SRKSSALHIASQ   80 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~A~~   80 (316)
                      +||||.|+..|+.++++.|++ +.++   +.+|..|+||||+|+..|+.+++++|+++|+++ +.+| ..|+||||+|+.
T Consensus        45 ~t~L~~A~~~g~~~~v~~Ll~-~~~~---~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           45 ETPWWTAARKADEQALSQLLE-DRDV---DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTT-TSCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHh-cCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHh
Confidence            589999999999999999999 7766   456899999999999999999999999999998 6677 899999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ  160 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  160 (316)
                      .|+.++       +++|++ ++++++.+|.+|+||||+|++.++.                    ..+.+||++|+..|+
T Consensus       120 ~~~~~~-------v~~Ll~-~ga~~~~~d~~g~tpl~~A~~~~~~--------------------~~~~~~l~~a~~~~~  171 (183)
T 3deo_A          120 YVRPEV-------VEALVE-LGADIEVEDERGLTALELAREILKT--------------------TPKGNPMQFGRRIGL  171 (183)
T ss_dssp             TTCHHH-------HHHHHH-HTCCTTCCCTTSCCHHHHHHHHHHT--------------------CCCCSHHHHHHHHHH
T ss_pred             cCcHHH-------HHHHHH-cCCCCcCCCCCCCCHHHHHHHhccC--------------------cccccHHHHHHHcCH
Confidence            999988       999999 7899999999999999999874322                    346799999999888


Q ss_pred             cceec
Q 036662          161 IEYYN  165 (316)
Q Consensus       161 ~~~v~  165 (316)
                      .++++
T Consensus       172 ~~i~~  176 (183)
T 3deo_A          172 EKVIN  176 (183)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77664

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=8.9e-25  Score=191.60  Aligned_cols=135  Identities=16%  Similarity=0.115  Sum_probs=118.6

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhhCCCcccc------cCCCCCcHHHHHHHc---CCcccccccHHHHHHHHHhCCCCccc
Q 036662           37 SETPLHVAALLRHKDFAKEILRQKPGIAGE------LDSRKSSALHIASQK---RYVGMKSNRIDVLEELVRARPLAASA  107 (316)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~------~d~~g~tpLh~A~~~---g~~~~~~~~~~iv~~Ll~~~~~~~~~  107 (316)
                      +.++||.|+..|+.+.++.|++.|+++ +.      .|..|.||||+|+..   |+.++       +++|++ .+++++.
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~i-------v~~Ll~-~gadvn~  221 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPL-------VDFIIQ-NGGHLDA  221 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCEECSSSCSCEECHHHHHHHTCCTTTHHH-------HHHHHH-HSSCTTC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcc-cccCCCcccCCCCccHHHHHHHhcccCcHHH-------HHHHHh-cCCCCCC
Confidence            346799999999999999999999998 55      699999999999997   66666       999999 7889999


Q ss_pred             ccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-ccccccCCCCCHHHHHHh
Q 036662          108 PLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-QSECCYANGFTAWDILAN  183 (316)
Q Consensus       108 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-~~~~~~~~g~TpL~~a~~  183 (316)
                      +|.+|+||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..++.++++ -+......|.||||+|+.
T Consensus       222 ~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~g~tpLh~A~~  295 (301)
T 2b0o_E          222 KAADGNTALHYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYS  295 (301)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHTTSSCCC----
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCChhHHHHh
Confidence            999999999999999999999999999999   9999999999999999999999998 333334479999999988

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.91  E-value=2.5e-24  Score=186.68  Aligned_cols=126  Identities=19%  Similarity=0.183  Sum_probs=112.7

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcChhhHHh---hhcCCCCCCHHHHHHhc---CCHHHHHHHHhhCCCcccccCCCCCcHHH
Q 036662            3 SKLYEAALAGSVTSLLEFLQKDRLILER---AAMNCPSETPLHVAALL---RHKDFAKEILRQKPGIAGELDSRKSSALH   76 (316)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~---~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh   76 (316)
                      ++|+.|+..|+.+.++.+++.+.++...   +..|..|.||||+|+..   |+.+++++|+++|+++ +.+|..|+||||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh  210 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHH
Confidence            4789999999999999999999875322   23367899999999999   8999999999999998 889999999999


Q ss_pred             HHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 036662           77 IASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDD  137 (316)
Q Consensus        77 ~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~  137 (316)
                      +|+..|+.++       +++|++ ++++++.+|.+|+||||+|+..|+.+++++|+++|++
T Consensus       211 ~A~~~g~~~~-------v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          211 YCCLTDNAEC-------LKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHTTCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHH-------HHHHHH-cCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999888       999999 8899999999999999999999999999999998875

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=4.1e-24  Score=191.90  Aligned_cols=138  Identities=15%  Similarity=0.080  Sum_probs=81.4

Q ss_pred             CCCCCCHHHHHHhc-CCHHHHHHHHhhCCCcccccC--CCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccC
Q 036662           34 NCPSETPLHVAALL-RHKDFAKEILRQKPGIAGELD--SRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLI  110 (316)
Q Consensus        34 ~~~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~  110 (316)
                      +..+.|+||.|+.. |+.++++.|+++|+++ +..|  ..|.||||+|+..|+.++       +++|++ ++++++..|.
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~i-------v~~LL~-~Gadvn~~d~  266 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLA-------CEFLLQ-NGANVNQADS  266 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHH-------HHHHHH-TTCCTTCCCT
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHH-------HHHHHH-cCCCCCCCCC
Confidence            34455667777766 6777777777777666 5555  666777777776666666       777776 5666666667


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec----------ccccccCCCCCHHHH
Q 036662          111 WVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN----------QSECCYANGFTAWDI  180 (316)
Q Consensus       111 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~----------~~~~~~~~g~TpL~~  180 (316)
                      .|+||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+..++.++++          +....+..+.|++++
T Consensus       267 ~G~TpLh~A~~~g~~~~v~~LL~~Gad---~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i  343 (368)
T 3jue_A          267 AGRGPLHHATILGHTGLACLFLKRGAD---LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDI  343 (368)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHCcCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHH
Confidence            777777777777777777777777766   6666777777777777777666666          233445567777777


Q ss_pred             HHh
Q 036662          181 LAN  183 (316)
Q Consensus       181 a~~  183 (316)
                      +..
T Consensus       344 ~~~  346 (368)
T 3jue_A          344 FRD  346 (368)
T ss_dssp             ---
T ss_pred             HHH
Confidence            655

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=8.6e-24  Score=189.80  Aligned_cols=146  Identities=14%  Similarity=0.064  Sum_probs=115.0

Q ss_pred             CcHHHHHHHc-CCHHHHHHHHHcChhhHHhhhcC--CCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHH
Q 036662            2 ESKLYEAALA-GSVTSLLEFLQKDRLILERAAMN--CPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIA   78 (316)
Q Consensus         2 ~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~--~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A   78 (316)
                      +|+||.|+.. |+.++++.|+++|++++.   .+  ..|.||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~---~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A  275 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAHGADVNW---VNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHA  275 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHTTCCTTC---CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred             CcHHHHHHHccCCHHHHHHHHHcCCCCCc---cccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence            4699999999 999999999999998743   35  78999999999999999999999999998 89999999999999


Q ss_pred             HHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhc
Q 036662           79 SQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVAD  158 (316)
Q Consensus        79 ~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~  158 (316)
                      +..|+.++       +++|++ .+++++.+|.+|+||||+|+..|+.+++++|++.+.........+..+.|+++.+...
T Consensus       276 ~~~g~~~~-------v~~LL~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          276 TILGHTGL-------ACLFLK-RGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             HHHTCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------
T ss_pred             HHcCcHHH-------HHHHHH-CcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHH
Confidence            99999988       999999 8999999999999999999999999999999988755433556677888998887665


Q ss_pred             C
Q 036662          159 K  159 (316)
Q Consensus       159 ~  159 (316)
                      .
T Consensus       348 ~  348 (368)
T 3jue_A          348 S  348 (368)
T ss_dssp             -
T ss_pred             H
Confidence            4

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.90  E-value=3.1e-23  Score=149.39  Aligned_cols=93  Identities=27%  Similarity=0.336  Sum_probs=82.9

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcH
Q 036662           36 PSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETI  115 (316)
Q Consensus        36 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~  115 (316)
                      +|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+.++       +++|++ .+.+++.+|.+|+||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~-------v~~Ll~-~ga~~~~~d~~g~t~   71 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEV-------VKLLLE-AGADVNAKDKNGRTP   71 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHH-------HHHHHH-TTCCTTCCCTTSCCH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHH-------HHHHHH-cCCCCCccCCCCCCH
Confidence            4789999999999999999999999998 8889999999999999988888       999999 888888999999999


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCC
Q 036662          116 LHLCVKHNQLEALKVLLENTDD  137 (316)
Q Consensus       116 Lh~A~~~g~~~~v~~Ll~~g~~  137 (316)
                      ||+|+..|+.+++++|+++|++
T Consensus        72 l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           72 LHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999998874

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.89  E-value=2e-23  Score=156.32  Aligned_cols=108  Identities=22%  Similarity=0.196  Sum_probs=101.6

Q ss_pred             hcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCC
Q 036662           32 AMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIW  111 (316)
Q Consensus        32 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~  111 (316)
                      .+|.+|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.++       +++|++ .+.+++.+|..
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~-------~~~Ll~-~g~~~~~~d~~   74 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEI-------VKLLLA-KGADVNARSKD   74 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHH-------HHHHTT-TTCCTTCCCTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHH-------HHHHHH-cCCCCcccCCC
Confidence            35889999999999999999999999999998 8899999999999999999888       999999 78999999999


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcH
Q 036662          112 VETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSI  151 (316)
Q Consensus       112 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~  151 (316)
                      |+||||+|+..|+.+++++|+++|++   +|.++..|.||
T Consensus        75 g~tpl~~A~~~~~~~~~~~Ll~~ga~---~n~~~~~~~~~  111 (115)
T 2l6b_A           75 GNTPEHLAKKNGHHEIVKLLDAKGAD---VNARSWGSSHH  111 (115)
T ss_dssp             CCCTTHHHHTTTCHHHHHHHHTTSSS---HHHHSCCCC--
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCC---CCcCCcccccc
Confidence            99999999999999999999999999   99999999987

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.87  E-value=6.7e-22  Score=171.37  Aligned_cols=127  Identities=20%  Similarity=0.156  Sum_probs=110.2

Q ss_pred             CCHHHHHHhcCCHHHHHHHHhhCCCcc-----cccCCCCCcHHHHHHHc---CCcccccccHHHHHHHHHhCCCCccccc
Q 036662           38 ETPLHVAALLRHKDFAKEILRQKPGIA-----GELDSRKSSALHIASQK---RYVGMKSNRIDVLEELVRARPLAASAPL  109 (316)
Q Consensus        38 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-----~~~d~~g~tpLh~A~~~---g~~~~~~~~~~iv~~Ll~~~~~~~~~~d  109 (316)
                      .++||.|+..|+.+.++.+++.|+++.     +..|..|.||||+|+..   |+.++       +++|++ .+++++.+|
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~-------v~~Ll~-~ga~in~~d  202 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI-------VDFLVQ-NSGNLDKQT  202 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHH-------HHHHHH-HCSCTTCCC
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHH-------HHHHHH-CCCCccccC
Confidence            368999999999999999999999952     44589999999999999   66666       999999 789999999


Q ss_pred             CCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceecccccccCCCCCHHHHHHhccCCCc
Q 036662          110 IWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANGFTAWDILANSKRKMK  189 (316)
Q Consensus       110 ~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~~~~~~~~g~TpL~~a~~~~~~~~  189 (316)
                      ..|+||||+|+.+|+.+++++|+++|++   ++.+|.+|+||||+|+..                              +
T Consensus       203 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~------------------------------~  249 (278)
T 1dcq_A          203 GKGSTALHYCCLTDNAECLKLLLRGKAS---IEIANESGETPLDIAKRL------------------------------K  249 (278)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHT------------------------------T
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCccCCCCCHHHHHHHc------------------------------C
Confidence            9999999999999999999999999999   888887777777766664                              4


Q ss_pred             HHHHHHHHHHhCCCcc
Q 036662          190 DWEIGELLRRAGAISA  205 (316)
Q Consensus       190 ~~~i~~~Ll~~ga~~~  205 (316)
                      +.+++++|+++|++..
T Consensus       250 ~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          250 HEHCEELLTQALSGRF  265 (278)
T ss_dssp             CHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCCCC
Confidence            5678888888888653

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=1.5e-21  Score=140.48  Aligned_cols=91  Identities=22%  Similarity=0.262  Sum_probs=84.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      ++||||.|+..|+.+++++|++.+.++   +.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~---n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence            579999999999999999999999987   445899999999999999999999999999998 8999999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPL  103 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~  103 (316)
                      .|+.++       +++|++ .++
T Consensus        78 ~~~~~~-------~~~Ll~-~ga   92 (93)
T 1n0q_A           78 NGHLEV-------VKLLLE-AGA   92 (93)
T ss_dssp             TTCHHH-------HHHHHH-TTC
T ss_pred             cCCHHH-------HHHHHH-cCC
Confidence            999988       999999 554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.83  E-value=3.7e-21  Score=143.95  Aligned_cols=104  Identities=19%  Similarity=0.180  Sum_probs=95.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      ++||||.|+..|+.++++.|++++.++   +.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus         9 g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            9 GNTPLHNAAKNGHAEEVKKLLSKGADV---NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLAKK   84 (115)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHTTTTCCS---SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHH
Confidence            479999999999999999999999887   445899999999999999999999999999998 8999999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHH
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETIL  116 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~L  116 (316)
                      .|+.++       +++|++ ++++++.++..|.+|-
T Consensus        85 ~~~~~~-------~~~Ll~-~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           85 NGHHEI-------VKLLDA-KGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTCHHH-------HHHHHT-TSSSHHHHSCCCC---
T ss_pred             CCCHHH-------HHHHHH-cCCCCCcCCccccccc
Confidence            999888       999999 8999999999998873

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.80  E-value=1.1e-19  Score=135.04  Aligned_cols=91  Identities=15%  Similarity=0.204  Sum_probs=81.5

Q ss_pred             hcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCC
Q 036662           32 AMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIW  111 (316)
Q Consensus        32 ~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~  111 (316)
                      ..|.+|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.++       +++|++ .+.+++.+|..
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~-------v~~Ll~-~ga~~~~~d~~   89 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEV-------VKLLLE-AGADVXAQDKF   89 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHH-------HHHHHH-TTCCTTCCCTT
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHH-------HHHHHH-cCCCccccccC
Confidence            35788999999999999999999999999998 8889999999999999998888       999999 78889999999


Q ss_pred             CCcHHHHHHhcCCHHHHHHH
Q 036662          112 VETILHLCVKHNQLEALKVL  131 (316)
Q Consensus       112 g~t~Lh~A~~~g~~~~v~~L  131 (316)
                      |+||||+|+..|+.+++++|
T Consensus        90 g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           90 GKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             SCCHHHHHHHHTCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHh
Confidence            99999999999999999876

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.77  E-value=4.5e-19  Score=131.62  Aligned_cols=91  Identities=21%  Similarity=0.268  Sum_probs=81.4

Q ss_pred             ccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccc
Q 036662           64 AGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNA  143 (316)
Q Consensus        64 ~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~  143 (316)
                      ....|.+|.||||+|+..|+.++       +++|++ .+.+++.+|..|+||||+|+.+|+.+++++|+++|++   ++.
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~-------v~~Ll~-~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~---~~~   85 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDE-------VRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD---VXA   85 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHH-------HHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTC
T ss_pred             ccccCCccchHHHHHHHcCCHHH-------HHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccc
Confidence            36678999999999999999988       999999 7889999999999999999999999999999999999   999


Q ss_pred             ccCCCCcHHHHHHhcCCcceec
Q 036662          144 KDDYGMSILHLAVADKQIEYYN  165 (316)
Q Consensus       144 ~d~~g~t~Lh~A~~~~~~~~v~  165 (316)
                      +|.+|+||||+|+..|+.++++
T Consensus        86 ~d~~g~tpl~~A~~~~~~~~~~  107 (110)
T 2zgd_A           86 QDKFGKTAFDISIDNGNEDLAE  107 (110)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHH
T ss_pred             cccCCCcHHHHHHHcCCHHHHH
Confidence            9999999999999999887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	316
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.001
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.004
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-04

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 8e-09
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 3/117 (2%)

Query: 113 ETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYA 172
           +T LHL V H     L  LL  +   E+L+ ++D G + LHLA    +     +     A
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 173 NGFTAWDILANSK---RKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNSLTSH 226
               A      +     +++      +L +      ++        S   T   +  
Sbjct: 70  GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA 126

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 9e-04
 Identities = 19/135 (14%), Positives = 37/135 (27%), Gaps = 7/135 (5%)

Query: 28  LERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMK 87
               + +C  +T    AA+    +   E   +      +L++                  
Sbjct: 112 YLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDA 171

Query: 88  SNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDY 147
                + +                  T LHL V+      L++LL+   D     A+   
Sbjct: 172 EMVRLLRDAGADLNK----PEPTCGRTPLHLAVEAQAASVLELLLKAGAD---PTARMYG 224

Query: 148 GMSILHLAVADKQIE 162
           G + L  A+      
Sbjct: 225 GRTPLGSALLRPNPI 239

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 17/137 (12%)

Query: 38  ETPLHVAALLRHKDFAKEILRQKPGIAG--ELDSRKSSALHIASQKRYVGMKSNRIDVLE 95
           +T LH+A + +H+ F   +L    G       +    +ALH+A+                
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69

Query: 96  ELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLE-------NTDDSEFLNAKDDYG 148
            ++ A             T LHL  +        VLL+       +  D+    ++D   
Sbjct: 70  GVLVAER--------GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 149 MSILHLAVADKQIEYYN 165
            +    A  D Q    N
Sbjct: 122 DTSHAPAAVDSQPNPEN 138

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 9/164 (5%)

Query: 39  TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELV 98
           TPLHVA+ + H    K +L++        + +  + LH+A++           +V + L+
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASP-NVSNVKVETPLHMAARA-------GHTEVAKYLL 53

Query: 99  RARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVAD 158
           + +    +A     +T LH   +      +K+LLEN  +           + I       
Sbjct: 54  QNKA-KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHV 112

Query: 159 KQIEYYNQSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGA 202
           + +    + E   A          +   K     + ELL    A
Sbjct: 113 ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 156

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 5e-07
 Identities = 37/183 (20%), Positives = 63/183 (34%), Gaps = 32/183 (17%)

Query: 5   LYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIA 64
           L+ A+  G +  +   LQ+          N   ETPLH+AA   H + AK +L+ K  + 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVS---NVKVETPLHMAARAGHTEVAKYLLQNKAKV- 59

Query: 65  GELDSRKSSALHIASQKRYVGMK----SNRIDVLEELVRARPLAASAPLIWVETI----- 115
                   + LH A++  +  M      N  +              A             
Sbjct: 60  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 119

Query: 116 ----------------LHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADK 159
                           LH+  K+ ++   ++LLE        NA    G++ LH+AV   
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH---PNAAGKNGLTPLHVAVHHN 176

Query: 160 QIE 162
            ++
Sbjct: 177 NLD 179

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 27/131 (20%), Positives = 50/131 (38%), Gaps = 12/131 (9%)

Query: 32  AMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRI 91
           A +    TPLH+AA   H +    +L ++       +    + LH+ +Q+         +
Sbjct: 226 AESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQE-------GHV 277

Query: 92  DVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSI 151
            V + L++   +   A      T LH+   +  ++ +K           +NAK   G S 
Sbjct: 278 PVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVK---FLLQHQADVNAKTKLGYSP 333

Query: 152 LHLAVADKQIE 162
           LH A      +
Sbjct: 334 LHQAAQQGHTD 344

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 1e-06
 Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 6/141 (4%)

Query: 22  QKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK 81
            + +   ++  +     T L  AA   H +  K +L +      ++++  +   +     
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA---DVNACDNMGRNALIHA 189

Query: 82  RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFL 141
                 S+   +   L+       +      +T L L V+   L  ++ LLE       +
Sbjct: 190 LLSSDDSDVEAITHLLLDHGA-DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE--I 246

Query: 142 NAKDDYGMSILHLAVADKQIE 162
           N  D  G + L LAV  K  +
Sbjct: 247 NDTDSDGKTALLLAVELKLKK 267

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 113 ETILHLCVKHNQLEALKVLLENTDDSEFLNAKDD-YGMSILHLAVADKQIEYYNQSECCY 171
             +L   V++  ++ ++ LLE   +   +N +++  G + LH AV   + +         
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGAN---VNFQEEEGGWTPLHNAVQMSREDIVELLLRHG 62

Query: 172 ANGFTAW 178
           A+     
Sbjct: 63  ADPVLRK 69

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 37/197 (18%), Positives = 52/197 (26%), Gaps = 33/197 (16%)

Query: 35  CPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK------------- 81
           C S   +   A     +  KE +     +A   D    +ALH A                
Sbjct: 1   CVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 60

Query: 82  -RYVGMKSNRIDVLEELVRARPLAASAPLIWV-----------ETILHLCVKHNQLEALK 129
                        L     A        L+              T LH     N+ E   
Sbjct: 61  VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV 120

Query: 130 VLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYANGFTAWDILANSKRKMK 189
           +LLE   +    +AKD Y  + +H   A K           Y       D   N+   + 
Sbjct: 121 MLLEGGAN---PDAKDHYEATAMHR-AAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 176

Query: 190 DW----EIGELLRRAGA 202
                 E  +LL   GA
Sbjct: 177 CDEERVEEAKLLVSQGA 193

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-04
 Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 15/133 (11%)

Query: 26  LILERAAMNCPSE---TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKR 82
           L+ + A +N  ++   TPLH AA     + A  +L          D  +++A+H A+ K 
Sbjct: 89  LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYEATAMHRAAAKG 147

Query: 83  YVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLN 142
            + M    +                      T LHL     ++E  K+L+        + 
Sbjct: 148 NLKMIHILLYYKASTN--------IQDTEGNTPLHLACDEERVEEAKLLVSQGAS---IY 196

Query: 143 AKDDYGMSILHLA 155
            ++    + L +A
Sbjct: 197 IENKEEKTPLQVA 209

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 45.3 bits (106), Expect = 5e-06
 Identities = 21/147 (14%), Positives = 37/147 (25%), Gaps = 10/147 (6%)

Query: 19  EFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAK--EILRQKPGIAGELDSRKSSALH 76
                 +L  +       SE    VAA+           +L     I   + +    A  
Sbjct: 72  YNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFR 131

Query: 77  IASQKRYVGMKSNRIDVLEELVRARP-LAASAPLIWVETILHLCVKHNQLEALKVLLENT 135
           +A++          + VL  L    P    +           L  ++  L  L  L E  
Sbjct: 132 LAAEN-------GHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELA 184

Query: 136 DDSEFLNAKDDYGMSILHLAVADKQIE 162
                   + +   +    AV      
Sbjct: 185 PTEATAMIQAENYYAFRWAAVGRGHHN 211

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 22/165 (13%), Positives = 44/165 (26%), Gaps = 41/165 (24%)

Query: 39  TPLHVAALLRHKDFAKEILRQKPGI----------------------------------- 63
           TPLH    + + +  K +++                                        
Sbjct: 109 TPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP 168

Query: 64  -AGELDSRKSSALHIASQK-----RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILH 117
                DS   + LH               K     ++  +V+ +     +     E+  +
Sbjct: 169 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 228

Query: 118 LCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
                 +   L+ L      +  LNA+D  G + L++A     I 
Sbjct: 229 DKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS 273

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 16/140 (11%), Positives = 37/140 (26%), Gaps = 10/140 (7%)

Query: 24  DRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGI-------AGELDSRKSSALH 76
           D L       +  + T LH   +           +    I             +  +   
Sbjct: 164 DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK 223

Query: 77  IASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTD 136
            +      G + + I    +L        +A     +T L++  +   +  +  LL+   
Sbjct: 224 ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGA 283

Query: 137 DSEFLNAKDDYGMSILHLAV 156
           D       +  G+  +    
Sbjct: 284 D---PFIANKSGLRPVDFGA 300

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 2e-04
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 1/80 (1%)

Query: 113 ETILHLCVKHNQLEALKVLLEN-TDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCY 171
           ++ LHL + H +      ++     D  FLN +++   + LHLAV   Q E         
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 62

Query: 172 ANGFTAWDILANSKRKMKDW 191
            +                + 
Sbjct: 63  CDPELRDFRGNTPLHLACEQ 82

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 2e-04
 Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 113 ETILHLCVKHNQLEALKVLLENTDDSEF-LNAKDDYGMSILHLAVADKQIEYYNQSECCY 171
           +T LH+ V    L A+  L+         L+  ++   + LHLAV               
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63

Query: 172 ANGFTAW 178
           A+     
Sbjct: 64  ASPMALD 70

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 116 LHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
           LH       L  ++ L+ +  D    + K+ +  + L +A + + I+
Sbjct: 181 LHSASGRGLLPLVRTLVRSGAD---SSLKNCHNDTPLMVARSRRVID 224

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 113 ETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIE 162
           +T + L  +  ++E +  L++       + A D    +   LA A+    
Sbjct: 222 KTPIMLAAQEGRIEVVMYLIQQGAS---VEAVDATDHTARQLAQANNHHN 268

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 2/78 (2%)

Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYNQSECCYAN 173
             LH     N+   ++ LL +      L  KD  G   LH +V+ +  E  +       N
Sbjct: 2   YPLHQACMENEFFKVQELLHS--KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 59

Query: 174 GFTAWDILANSKRKMKDW 191
                    +        
Sbjct: 60  VNLDDYPDDSGWTPFHIA 77

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 12/54 (22%), Positives = 21/54 (38%)

Query: 39 TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRID 92
           PLH A +       +E+L  KP +  + D      LH +   +   + S  + 
Sbjct: 2  YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS 55

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.2 bits (87), Expect = 8e-04
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 114 TILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVAD 158
           T LH      + EA ++L+EN  D   + A +  G +   +A  D
Sbjct: 234 TPLHAAAHWGKEEACRILVENLCD---MEAVNKVGQTAFDVADED 275

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.98
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.98
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.92
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.88
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.87

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1e-38  Score=271.34  Aligned_cols=189  Identities=23%  Similarity=0.172  Sum_probs=169.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      |+||||.||+.|+.+++++|++.+++....+.+|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+.
T Consensus         9 G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~   87 (255)
T d1oy3d_           9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHLACR   87 (255)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccchhhhhhhc
Confidence            689999999999999999999998876555667899999999999999999999999999998 8899999999999999


Q ss_pred             cCCcccccccHHHHHHHHHh----------------------------------------------CCCCcccccCCCCc
Q 036662           81 KRYVGMKSNRIDVLEELVRA----------------------------------------------RPLAASAPLIWVET  114 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~----------------------------------------------~~~~~~~~d~~g~t  114 (316)
                      .++.++       ++.|++.                                              .+..++.+|.+|+|
T Consensus        88 ~~~~~~-------~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~T  160 (255)
T d1oy3d_          88 VRAHTC-------ACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT  160 (255)
T ss_dssp             TTCHHH-------HHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred             cCchHH-------HHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcc
Confidence            999887       4444321                                              12334557889999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCccccc-cccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccC
Q 036662          115 ILHLCVKHNQLEALKVLLENTDDSEFLN-AKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKR  186 (316)
Q Consensus       115 ~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~-~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~  186 (316)
                      |||+|+.+|+.+++++|++++.+   .+ .++..|+||||+|+..|+.++++       +++.+|++|+||||+|+.   
T Consensus       161 pLh~A~~~~~~~~v~~Ll~~~~~---~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~---  234 (255)
T d1oy3d_         161 PLHVAVIHKDAEMVRLLRDAGAD---LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL---  234 (255)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHT---
T ss_pred             cccccccccccccccchhccccc---ccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH---
Confidence            99999999999999999999988   44 45788999999999999999999       899999999999999999   


Q ss_pred             CCcHHHHHHHHHHhCCCc
Q 036662          187 KMKDWEIGELLRRAGAIS  204 (316)
Q Consensus       187 ~~~~~~i~~~Ll~~ga~~  204 (316)
                       .++.+++++|+++||+.
T Consensus       235 -~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         235 -RPNPILARLLRAHGAPE  251 (255)
T ss_dssp             -SSCHHHHHHHHHTTCCC
T ss_pred             -CCCHHHHHHHHHcCCCC
Confidence             89999999999999974

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=246.89  Aligned_cols=199  Identities=22%  Similarity=0.240  Sum_probs=185.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      ++.||.+|..|+.+.|+.+++..+...  +.+|..|+||||+|+..|+.+++++|++.+.+. ...+..+.++++.++..
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~--~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~   80 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLA--TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA   80 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGG--GCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcC--cCcCCCCCCHHHHHHHhhhhccccccccccccc-ccccccccccccccccc
Confidence            688999999999999999998876443  457999999999999999999999999999998 77788999999999999


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCc
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQI  161 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  161 (316)
                      |+.++       +++|++ .+.+++.+|.+|+||||+|+.+|+.+++++|+++|++   ++.+|.+|.||||+|+..++.
T Consensus        81 ~~~~i-------~~~Ll~-~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d---~~~~~~~~~t~L~~a~~~~~~  149 (223)
T d1uoha_          81 GRDEI-------VKALLG-KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN---PDAKDHYEATAMHRAAAKGNL  149 (223)
T ss_dssp             TCHHH-------HHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCH
T ss_pred             cccch-------hHHHhc-cCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCccchhhhhcCCc
Confidence            99988       999999 7788999999999999999999999999999999999   999999999999999999999


Q ss_pred             ceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCcccccccc
Q 036662          162 EYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSIT  218 (316)
Q Consensus       162 ~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~  218 (316)
                      ++++       +++.+|.+|+||||+|+.    .++.+++++|+++|++++..+..+.+|..++
T Consensus       150 ~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~----~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A  209 (223)
T d1uoha_         150 KMIHILLYYKASTNIQDTEGNTPLHLACD----EERVEEAKLLVSQGASIYIENKEEKTPLQVA  209 (223)
T ss_dssp             HHHHHHHHTTCCSCCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC
T ss_pred             chhhhhccccceeeeccCCCCceeccccc----cCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            9888       899999999999999999    8999999999999999999888888887665

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-35  Score=248.41  Aligned_cols=201  Identities=19%  Similarity=0.192  Sum_probs=149.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcc--cccCCCCCcHHHHHH
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIA--GELDSRKSSALHIAS   79 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~--~~~d~~g~tpLh~A~   79 (316)
                      ++|||+||+.|+.+.|+.|++..+...  +.+|.+|+||||+|+..|+.+++++|+++|+++.  +..|..|.+|+|+++
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~--~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~   78 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLL--LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   78 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGT--TCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcc--cccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccc
Confidence            689999999999999999999765432  4569999999999999999999999999998862  456788999999999


Q ss_pred             HcCCcccccccHHHHHHHHHhCCC--CcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHh
Q 036662           80 QKRYVGMKSNRIDVLEELVRARPL--AASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVA  157 (316)
Q Consensus        80 ~~g~~~~~~~~~~iv~~Ll~~~~~--~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~  157 (316)
                      ..+..++       ++.++. .+.  .....+..+.|+++.++..++.++++.|+..|.+   .+.+|.+|+||||+|+.
T Consensus        79 ~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~---~~~~~~~g~t~l~~a~~  147 (229)
T d1ixva_          79 SVGNLEV-------VKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS---VRIKDKFNQIPLHRAAS  147 (229)
T ss_dssp             HHTCHHH-------HHHHHS-SSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHH
T ss_pred             ccccccc-------cccccc-ccccccccccccccccccccccccchhhhhhhhhhhccc---ccccCCCCCCccchhhh
Confidence            9998887       666555 322  2334455666777777777777777777766666   66666677777777777


Q ss_pred             cCCcceec--------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHH-hCCCcccccCCccccccccc
Q 036662          158 DKQIEYYN--------QSECCYANGFTAWDILANSKRKMKDWEIGELLRR-AGAISAKEMQQPATKVSITQ  219 (316)
Q Consensus       158 ~~~~~~v~--------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~-~ga~~~~~~~~~~~~~~~~~  219 (316)
                      .|+.++++        +++.+|.+|+||||+|+.    .++.+++++|++ .|++++.....+.++.+++.
T Consensus       148 ~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~----~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~  214 (229)
T d1ixva_         148 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA----EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL  214 (229)
T ss_dssp             HTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS
T ss_pred             cccccccccccccccccccccccccCCchhhhcc----cccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh
Confidence            76666665        556666677777777776    666667776664 46666666666666666554

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-35  Score=262.47  Aligned_cols=214  Identities=22%  Similarity=0.257  Sum_probs=181.5

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 036662            3 SKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKR   82 (316)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g   82 (316)
                      ||||.||..|+.++|++|+++|+++   +..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+..|
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~i---n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi-~~~~~~g~t~L~~A~~~g   77 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASP---NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKDDQTPLHCAARIG   77 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCS---CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTSCCHHHHHHHHT
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcC
Confidence            8999999999999999999999887   445899999999999999999999999999998 899999999999999999


Q ss_pred             Cccc----------------------------------------------------------------------------
Q 036662           83 YVGM----------------------------------------------------------------------------   86 (316)
Q Consensus        83 ~~~~----------------------------------------------------------------------------   86 (316)
                      +.++                                                                            
T Consensus        78 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~  157 (408)
T d1n11a_          78 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH  157 (408)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCC
Confidence            8876                                                                            


Q ss_pred             ----------------ccccHHHHHHHHHh--------------------------------------------------
Q 036662           87 ----------------KSNRIDVLEELVRA--------------------------------------------------  100 (316)
Q Consensus        87 ----------------~~~~~~iv~~Ll~~--------------------------------------------------  100 (316)
                                      ..|+.+++++|+++                                                  
T Consensus       158 ~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~  237 (408)
T d1n11a_         158 PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL  237 (408)
T ss_dssp             TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHH
Confidence                            33444444444431                                                  


Q ss_pred             ---------------CCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec
Q 036662          101 ---------------RPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN  165 (316)
Q Consensus       101 ---------------~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  165 (316)
                                     .+...+..|..|.||||.|++.++.+++++|+++|++   ++..+..+.||||.++..++.++++
T Consensus       238 a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~---~~~~~~~~~t~L~~~~~~~~~~~~~  314 (408)
T d1n11a_         238 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDATTRMGYTPLHVASHYGNIKLVK  314 (408)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCSSCCCHHHHHHHSSCSHHHH
T ss_pred             HHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCc---cccccccccccchhhcccCcceeee
Confidence                           3333344466677788888888888888888888888   8888888999999999988888877


Q ss_pred             -------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCccccccccccCcccccc
Q 036662          166 -------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNSLTSHG  227 (316)
Q Consensus       166 -------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~  227 (316)
                             ++|.+|.+|+||||+|++    .++.+++++|+++||+++..+..+.+|...+...+....+
T Consensus       315 ~ll~~g~~in~~d~~G~T~Lh~A~~----~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv  379 (408)
T d1n11a_         315 FLLQHQADVNAKTKLGYSPLHQAAQ----QGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVT  379 (408)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             eeccccccccccCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence                   799999999999999999    8999999999999999999899999998877665554433

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-34  Score=239.74  Aligned_cols=179  Identities=19%  Similarity=0.161  Sum_probs=167.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      ++||||+|+..|+.++++++++.+....   ..+..+.++++.|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus        37 G~TpLh~Aa~~g~~e~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~  112 (223)
T d1uoha_          37 SRTALHWACSAGHTEIVEFLLQLGVPVN---DKDDAGWSPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAAS  112 (223)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHTCCSC---CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHhhhhcccccccccccccc---cccccccccccccccccccchhHHHhccCcee-EeeCCCCCchhhHHHH
Confidence            4799999999999999999999987663   34778899999999999999999999999998 8999999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ  160 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  160 (316)
                      .|+.++       +++|++ ++.+++.+|..|.||||+|+..++.+++++|.+.+.+   ++.+|.+|+||||+|+..|+
T Consensus       113 ~~~~e~-------~~~Ll~-~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~---i~~~d~~g~TpL~~Aa~~g~  181 (223)
T d1uoha_         113 KNRHEI-------AVMLLE-GGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS---TNIQDTEGNTPLHLACDEER  181 (223)
T ss_dssp             HTCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTCCCHHHHHHHTTC
T ss_pred             cCCHHH-------HHHHHH-CCCCCCCcCCCCCccchhhhhcCCcchhhhhccccce---eeeccCCCCceeccccccCc
Confidence            999988       999999 8889999999999999999999999999999999999   99999999999999999999


Q ss_pred             cceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHH
Q 036662          161 IEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRR  199 (316)
Q Consensus       161 ~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~  199 (316)
                      .++++       +++.+|++|+||||+|.     .++.+++++|++
T Consensus       182 ~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-----~~~~~i~~~Ll~  222 (223)
T d1uoha_         182 VEEAKLLVSQGASIYIENKEEKTPLQVAK-----GGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHCC-----TTHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHH-----CCCHHHHhcccC
Confidence            99998       89999999999999984     488889999875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=8.3e-32  Score=231.61  Aligned_cols=197  Identities=20%  Similarity=0.178  Sum_probs=154.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      +|+||.|++.|+.++|++|+++|++++.+  .+..|.||||+|+..|+.+++++|++.+++. ...+..+.+|.+.++..
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~--~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~-~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQ--EEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCC--CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCcc--CCCCCCCHHHHHHHcCCHHHhhhhccccccc-cccccccchhhHHHhhc
Confidence            68999999999999999999999987433  2457999999999999999999999887764 22222333333333322


Q ss_pred             CCccc---------------------------------------------------------------------ccccHH
Q 036662           82 RYVGM---------------------------------------------------------------------KSNRID   92 (316)
Q Consensus        82 g~~~~---------------------------------------------------------------------~~~~~~   92 (316)
                      +..+.                                                                     .+|+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence            22222                                                                     233344


Q ss_pred             HHHHHHHhCCCCcccccCCCCcHHHHHHhcC----CHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec---
Q 036662           93 VLEELVRARPLAASAPLIWVETILHLCVKHN----QLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN---  165 (316)
Q Consensus        93 iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g----~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~---  165 (316)
                      ++++|+++.+.+++..+..|.++++.+...+    ..+++++|+++|++   ++.+|.+|.||||+|+..|+.++++   
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~---~n~~~~~g~t~L~~a~~~~~~~~v~~lL  239 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLILAVEKKHLGLVQRLL  239 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC---SSCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCC---CCccCCCCCCccchhhhcCcHHHHHHHH
Confidence            4888877667777777777777776654433    35677888888888   8899999999999999999999987   


Q ss_pred             -----ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCccccc
Q 036662          166 -----QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEM  208 (316)
Q Consensus       166 -----~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~  208 (316)
                           +++.+|.+|.||||+|++    .++.+++++|+++||+++..+
T Consensus       240 ~~~g~din~~d~~G~TpL~~A~~----~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         240 EQEHIEINDTDSDGKTALLLAVE----LKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HSSSCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHSSCSCCSS
T ss_pred             HcCCCCCcCCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCccc
Confidence                 899999999999999999    899999999999999997654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.4e-33  Score=230.69  Aligned_cols=188  Identities=20%  Similarity=0.203  Sum_probs=162.1

Q ss_pred             CCcHHHHHHHcCCHHHHHH----HHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHH
Q 036662            1 MESKLYEAALAGSVTSLLE----FLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALH   76 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~----Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh   76 (316)
                      |+||||+|+..|+.+++..    +...+.++   +.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i---n~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~   77 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFL---NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLH   77 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCC---CCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCc---ccCCCCCCccccccccccccccccccccccccc-cccccccccccc
Confidence            6899999999999765554    44556655   456899999999999999999999999999998 899999999999


Q ss_pred             HHHHcCCcccccccHHHHHHHHHhC-----CCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccccc-CCCCc
Q 036662           77 IASQKRYVGMKSNRIDVLEELVRAR-----PLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKD-DYGMS  150 (316)
Q Consensus        77 ~A~~~g~~~~~~~~~~iv~~Ll~~~-----~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d-~~g~t  150 (316)
                      +++..|+.++       ++.|++..     ..........|.||||.|+..++.+++++|++.|..   ++.++ .+|+|
T Consensus        78 ~~~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~---~~~~~~~~G~T  147 (221)
T d1iknd_          78 LACEQGCLAS-------VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRT  147 (221)
T ss_dssp             HHHHHTCHHH-------HHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCC
T ss_pred             cccccccccc-------cchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcc---cccccccCCCC
Confidence            9999999888       99999832     222334456789999999999999999999999988   66654 67999


Q ss_pred             HHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCccc
Q 036662          151 ILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAK  206 (316)
Q Consensus       151 ~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~  206 (316)
                      |||+|+..|+.++++       |++.+|.+|+||||+|+.    .++.++++.|.+.+.+...
T Consensus       148 ~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~----~~~~~~~~~l~~~~~~~~~  206 (221)
T d1iknd_         148 ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWG----RPSTRIQQQLGQLTLENLQ  206 (221)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTT----SSCHHHHHHHHTTSCGGGS
T ss_pred             ccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHH----CCCHHHHHHHHHcCCcccc
Confidence            999999999999999       899999999999999999    8899999999999887544

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=8.3e-32  Score=232.69  Aligned_cols=202  Identities=19%  Similarity=0.142  Sum_probs=181.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      .|+|+.||..|+.++|+.||++|+++   +.+|.+|.||||+|+..|+.++|++|+++|++. ...+..+.|||+.++..
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~~Gadv---n~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLERGADI---NYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASC  116 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCC---CccCCCCCcHHHHHHhcCCceeeeeeccccccc-ccccccccccccccccc
Confidence            37899999999999999999999987   455999999999999999999999999999997 88899999999999999


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhc-CCC-----------------------
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLEN-TDD-----------------------  137 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~-g~~-----------------------  137 (316)
                      ++.++       ++.|++ .+...+..|..|.+++++|+..+..+.++.++.. +.+                       
T Consensus       117 ~~~~~-------~~~l~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (291)
T d1s70b_         117 GYLDI-------AEYLIS-QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG  188 (291)
T ss_dssp             TCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccch-------hhcccc-cCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccc
Confidence            99998       999999 7888888999999999999999999999888853 222                       


Q ss_pred             ccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCC
Q 036662          138 SEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQ  210 (316)
Q Consensus       138 ~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~  210 (316)
                      .......+.+|.||||+|+..|+.++++       ++|.+|.+|+||||+|+.    .++.+++++|+++|++.+..+..
T Consensus       189 ~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~----~g~~~iv~lLl~~Gadv~~~d~~  264 (291)
T d1s70b_         189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH----WGKEEACRILVENLCDMEAVNKV  264 (291)
T ss_dssp             CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCCcCCC
Confidence            0123556889999999999999999988       889999999999999999    89999999999999999988888


Q ss_pred             ccccccccc
Q 036662          211 PATKVSITQ  219 (316)
Q Consensus       211 ~~~~~~~~~  219 (316)
                      +.++..++.
T Consensus       265 G~TaL~~A~  273 (291)
T d1s70b_         265 GQTAFDVAD  273 (291)
T ss_dssp             SCCTTTSCC
T ss_pred             CCCHHHHHH
Confidence            888887664

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=3.6e-32  Score=232.91  Aligned_cols=188  Identities=21%  Similarity=0.268  Sum_probs=158.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHH--------cChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCC
Q 036662            1 MESKLYEAALAGSVTSLLEFLQ--------KDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKS   72 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~--------~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~   72 (316)
                      ++||||+||..|+.++|+.|+.        .|+++   +.+|.+|+||||+|+..|+.++|++|+++|+++ +.+|.+|.
T Consensus        33 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv---n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~  108 (277)
T d2fo1e1          33 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV---NAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSER  108 (277)
T ss_dssp             CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCC
T ss_pred             CccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc---cccCCCCCeeecccccccccccccccccccccc-cccccccc
Confidence            4699999999999999988754        45555   456999999999999999999999999999998 88999999


Q ss_pred             cHHHHHHHcCCccc--------------------------------ccccHHHHHHHHHhCC-------CCcccccCCCC
Q 036662           73 SALHIASQKRYVGM--------------------------------KSNRIDVLEELVRARP-------LAASAPLIWVE  113 (316)
Q Consensus        73 tpLh~A~~~g~~~~--------------------------------~~~~~~iv~~Ll~~~~-------~~~~~~d~~g~  113 (316)
                      |||++|...++.++                                .......+..+.+...       ...+..+..|+
T Consensus       109 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  188 (277)
T d2fo1e1         109 SALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGR  188 (277)
T ss_dssp             CHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCC
T ss_pred             ccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCC
Confidence            99999999998776                                2223344444444221       11233467899


Q ss_pred             cHHHHHHhcCCHHHHHHHH-hcCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhcc
Q 036662          114 TILHLCVKHNQLEALKVLL-ENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSK  185 (316)
Q Consensus       114 t~Lh~A~~~g~~~~v~~Ll-~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~  185 (316)
                      ||||+++..++.+++++++ ..+.+   .+.+|..|+||||+|+..|+.++++       +++.+|.+|+||||+|+.  
T Consensus       189 t~L~~~~~~~~~~~~~~~l~~~~~~---~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~--  263 (277)
T d2fo1e1         189 TALHYAAQVSNMPIVKYLVGEKGSN---KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQA--  263 (277)
T ss_dssp             CTHHHHHSSCCHHHHHHHHHHSCCC---TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHH--
T ss_pred             Ccccccccccccccccccccccccc---ccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHH--
Confidence            9999999999999998755 56666   8889999999999999999999999       899999999999999999  


Q ss_pred             CCCcHHHHHHHHHH
Q 036662          186 RKMKDWEIGELLRR  199 (316)
Q Consensus       186 ~~~~~~~i~~~Ll~  199 (316)
                        .++.+++++|++
T Consensus       264 --~~~~~iv~lL~~  275 (277)
T d2fo1e1         264 --NNHHNIVDIFDR  275 (277)
T ss_dssp             --TTCHHHHHHHHT
T ss_pred             --cCCHHHHHHHHH
Confidence              899999999985

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.2e-31  Score=227.26  Aligned_cols=181  Identities=22%  Similarity=0.180  Sum_probs=157.9

Q ss_pred             cCCCCCCHHHHHHhcCCHHHHHHHHhhCCCc--ccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccC
Q 036662           33 MNCPSETPLHVAALLRHKDFAKEILRQKPGI--AGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLI  110 (316)
Q Consensus        33 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~  110 (316)
                      .+.+|+||||+||..|+.+++++|+++|+++  .+.+|..|.||||+|+..|+.++       +++|++ .+++++..|.
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~i-------v~~Ll~-~ga~i~~~d~   76 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST-------VEKLYA-AGAGVLVAER   76 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHH-------HHHHHH-TTCCSSCCCT
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccc-------cccccc-cccccccccc
Confidence            4889999999999999999999999998773  36788999999999999999988       999999 8999999999


Q ss_pred             CCCcHHHHHHhcCCHHHHHHHHhcCCC--------------------------------------------ccccccccC
Q 036662          111 WVETILHLCVKHNQLEALKVLLENTDD--------------------------------------------SEFLNAKDD  146 (316)
Q Consensus       111 ~g~t~Lh~A~~~g~~~~v~~Ll~~g~~--------------------------------------------~~~~~~~d~  146 (316)
                      +|+||||+|+..++.+++++|++.+..                                            ...++.+|.
T Consensus        77 ~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~  156 (255)
T d1oy3d_          77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY  156 (255)
T ss_dssp             TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCT
T ss_pred             ccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccc
Confidence            999999999999999999999875421                                            123567899


Q ss_pred             CCCcHHHHHHhcCCcceec-------ccc-cccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCcccccccc
Q 036662          147 YGMSILHLAVADKQIEYYN-------QSE-CCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSIT  218 (316)
Q Consensus       147 ~g~t~Lh~A~~~~~~~~v~-------~~~-~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~  218 (316)
                      +|.||||+|+..++.++++       +.+ ..+..|.||||+|+.    .++.+++++|+++|++++.....+.+|...+
T Consensus       157 ~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~----~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A  232 (255)
T d1oy3d_         157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE----AQAASVLELLLKAGADPTARMYGGRTPLGSA  232 (255)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCcccccccccccccccccchhccccccccccccccccccccccc----ccHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            9999999999999999988       333 457789999999999    8999999999999999999888888888766


Q ss_pred             ccCcccc
Q 036662          219 QTNSLTS  225 (316)
Q Consensus       219 ~~~~~~~  225 (316)
                      .......
T Consensus       233 ~~~~~~~  239 (255)
T d1oy3d_         233 LLRPNPI  239 (255)
T ss_dssp             HTSSCHH
T ss_pred             HHCCCHH
Confidence            5554433

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=1.8e-30  Score=213.39  Aligned_cols=173  Identities=23%  Similarity=0.247  Sum_probs=156.5

Q ss_pred             HHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCccc-------
Q 036662           14 VTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGM-------   86 (316)
Q Consensus        14 ~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~-------   86 (316)
                      .++|+.|+++|++++..  .|.+|.||||+||..|+.+++++|++.|+++ +.+|..+.++++.++..++...       
T Consensus         2 ~~~v~~Ll~~g~din~~--~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLAQGAELNAT--MDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCCcCcC--cCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccc
Confidence            48999999999998543  3788999999999999999999999999998 8899999999999998888775       


Q ss_pred             --------------------ccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccC
Q 036662           87 --------------------KSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDD  146 (316)
Q Consensus        87 --------------------~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~  146 (316)
                                          ........+.|.+ .+.+++.++..|+||||+++.+++.++++.+++.+.+   ++.+|.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~---~~~~d~  154 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLIT-ADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN---RDAQDD  154 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHH-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCT
T ss_pred             cccccccccccccccccccccccchhhhhhhhh-hcccccccCCCCCCcchhhcccCcceeeeeecccccc---cccccc
Confidence                                4455566777777 8888899999999999999999999999999999998   999999


Q ss_pred             CCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHH
Q 036662          147 YGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELL  197 (316)
Q Consensus       147 ~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~L  197 (316)
                      +|+||||+|+..|+.++++       +++.+|..|+||||+|++    .++.+++++|
T Consensus       155 ~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~----~~~~~iv~lL  208 (209)
T d1ot8a_         155 KDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASE----RLHHDIVRLL  208 (209)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHH
T ss_pred             ccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH----cCCHHHHhhc
Confidence            9999999999999999999       899999999999999999    8999999976

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-30  Score=213.86  Aligned_cols=205  Identities=20%  Similarity=0.205  Sum_probs=161.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHH----cChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQ----KDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALH   76 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh   76 (316)
                      ++||||.||..|+.++|+.|++    .+.++   +.+|..|+||||+|+..|+.++++.|+++|++. +..+..|.++++
T Consensus         3 G~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i---n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~   78 (228)
T d1k1aa_           3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGREL---DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAH   78 (228)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CccCCCCCccceehhcccccccccccccccccc-cccccccccccc
Confidence            6899999999999999999986    56665   445899999999999999999999999999998 888999999999


Q ss_pred             HHHHcCCcccccccHHHHHHHHHhCC---CCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHH
Q 036662           77 IASQKRYVGMKSNRIDVLEELVRARP---LAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILH  153 (316)
Q Consensus        77 ~A~~~g~~~~~~~~~~iv~~Ll~~~~---~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh  153 (316)
                      .|...++.++       ++.+.....   ...+.......++||.+.........+.|.....+.  ....+..|.+|||
T Consensus        79 ~a~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~  149 (228)
T d1k1aa_          79 LACEHRSPTC-------LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI--DAVDIKSGRSPLI  149 (228)
T ss_dssp             HHHHTTCHHH-------HHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTTCCCHHH
T ss_pred             cccccccccc-------hhhhhhccccccccccccccccccccccccccccchhhhhhhcccccc--ccccccchhhHHH
Confidence            9999999887       666655322   223444556777888888888888877777765541  3445667888888


Q ss_pred             HHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCccccccccccCc
Q 036662          154 LAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNS  222 (316)
Q Consensus       154 ~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  222 (316)
                      .|+..+...+++       +.+.+|..|.||||+|+.    .++.+++++|+++|++++.....+.+|+..+..++
T Consensus       150 ~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~----~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~  221 (228)
T d1k1aa_         150 HAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG----RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR  221 (228)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHH----HTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHH
T ss_pred             HHHHhhhhhhhhhhhhhccccccccccCcchHHHHHH----cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCC
Confidence            888887777766       667777888888888888    67788888888888888777777777777665443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=6.1e-32  Score=231.51  Aligned_cols=204  Identities=17%  Similarity=0.149  Sum_probs=169.2

Q ss_pred             CcHHHHHHHc-CCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHH--------HhhCCCcccccCCCCC
Q 036662            2 ESKLYEAALA-GSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEI--------LRQKPGIAGELDSRKS   72 (316)
Q Consensus         2 ~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~L--------l~~~~~~~~~~d~~g~   72 (316)
                      |||||++++. |+.++++.|.+.+.+..+    +.+|+||||+||..|+.++|+.|        ++.|+++ +.+|.+|+
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~----~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadv-n~~d~~G~   75 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIID----PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDEN   75 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCC----CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSC
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCC----CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCc-cccCCCCC
Confidence            6999977655 555666666666654421    34699999999999999988877        5668998 89999999


Q ss_pred             cHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCC--------C-------
Q 036662           73 SALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTD--------D-------  137 (316)
Q Consensus        73 tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~--------~-------  137 (316)
                      ||||+|+..|+.++       +++|++ ++++++.+|.+|+||||+|+..++.++++.+...+.        +       
T Consensus        76 TpLh~A~~~g~~~i-------v~~Ll~-~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  147 (277)
T d2fo1e1          76 TPLMLAVLARRRRL-------VAYLMK-AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL  147 (277)
T ss_dssp             CHHHHHHHHTCHHH-------HHHHHH-TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHH
T ss_pred             eeeccccccccccc-------cccccc-cccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhH
Confidence            99999999999988       999999 889999999999999999999999999988875421        0       


Q ss_pred             -----------------------------ccccccccCCCCcHHHHHHhcCCcceec--------ccccccCCCCCHHHH
Q 036662          138 -----------------------------SEFLNAKDDYGMSILHLAVADKQIEYYN--------QSECCYANGFTAWDI  180 (316)
Q Consensus       138 -----------------------------~~~~~~~d~~g~t~Lh~A~~~~~~~~v~--------~~~~~~~~g~TpL~~  180 (316)
                                                   ....+..+.+|.||||+++..++.+.++        +.+.+|..|+||||+
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~  227 (277)
T d2fo1e1         148 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML  227 (277)
T ss_dssp             HHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHH
T ss_pred             HHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHH
Confidence                                         0123455678999999999999988776        778899999999999


Q ss_pred             HHhccCCCcHHHHHHHHHHhCCCcccccCCccccccccccCc
Q 036662          181 LANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNS  222 (316)
Q Consensus       181 a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  222 (316)
                      |+.    .++.+++++|+++|++.+..+..+.++...+....
T Consensus       228 A~~----~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~  265 (277)
T d2fo1e1         228 AAQ----EGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN  265 (277)
T ss_dssp             HHH----HTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTT
T ss_pred             HHH----cCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcC
Confidence            999    88999999999999999988888888876554433

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-29  Score=198.71  Aligned_cols=142  Identities=21%  Similarity=0.242  Sum_probs=118.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 036662            3 SKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKR   82 (316)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g   82 (316)
                      ++||.||..|+.++|+.|+++|+++   +.+|..|.||||+|+ .|+.+++++|+++|+++ +.++..|.+|++.++..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~---n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNV---NAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCT---TCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCc---CccCCcccccccccc-ccccccccccccccccc-ccccccCccccccccccc
Confidence            6899999999999999999999887   445889999999875 68999999999999998 888999999999999998


Q ss_pred             CcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcC
Q 036662           83 YVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADK  159 (316)
Q Consensus        83 ~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~  159 (316)
                      +.+.       ++.+++ .+..++..|..|.+|||+|+..++.+++++|++++...  .+.+|.+|+||||+|+..+
T Consensus        78 ~~~~-------~~~l~~-~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~--~~~~d~~g~TpL~~A~~~~  144 (156)
T d1ihba_          78 FLDT-------LQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN--VGHRNHKGDTACDLARLYG  144 (156)
T ss_dssp             CHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC--TTCCCTTSCCHHHHHHHTT
T ss_pred             cccc-------cccccc-cccccccccccccccccccccccccccccccccccccc--ccccCCCCCCHHHHHHHcC
Confidence            8888       899988 77778888999999999999999999999999887631  5566665555555555543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.7e-29  Score=194.02  Aligned_cols=148  Identities=20%  Similarity=0.289  Sum_probs=136.6

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      +||||.||+.|+.++|+.||++|+++.    .|..|+||||+|+..++.++++.++...... ...+..+.++++.++..
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~----~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   77 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC----CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc----cccCCCccccccccccccccccccccccccc-ccccccccccccccccc
Confidence            589999999999999999999998652    4889999999999999999999999998887 67788899999999999


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCc
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQI  161 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  161 (316)
                      .+.++       ++.++. .+.+.+.+|.+|+||||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|+.+|+.
T Consensus        78 ~~~~~-------~~~l~~-~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad---~~~~d~~g~Tpl~~A~~~g~~  146 (153)
T d1awcb_          78 GHANI-------VEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD---VHTQSKFCKTAFDISIDNGNE  146 (153)
T ss_dssp             TCHHH-------HHHHHT-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCH
T ss_pred             cccee-------eecccc-cCCccccccccCchHHHhhhhcchhheeeeccccccC---CcccCCCCCCHHHHHHHcCCH
Confidence            99988       999988 7788888999999999999999999999999999999   999999999999999999988


Q ss_pred             ceec
Q 036662          162 EYYN  165 (316)
Q Consensus       162 ~~v~  165 (316)
                      ++++
T Consensus       147 eiv~  150 (153)
T d1awcb_         147 DLAE  150 (153)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.5e-29  Score=194.42  Aligned_cols=146  Identities=23%  Similarity=0.286  Sum_probs=126.8

Q ss_pred             cHHHHHHHcCCHHHHHHHHHc-ChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            3 SKLYEAALAGSVTSLLEFLQK-DRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      .+|+.||..|+.++|+.|+++ +.++   +.+|..|+||||+|+. |+.+++++|+++++++ +..+..|.+|++.++..
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~---n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~   78 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHP---DALNRFGKTALQVMMF-GSTAIALELLKQGASP-NVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCT---TCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCC---CccCCCCCcccccccc-cccccccccccccccc-ccccccccccccccccc
Confidence            469999999999999999987 4444   4568999999999864 8899999999999998 88899999999999999


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCc
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQI  161 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~  161 (316)
                      ++.++       ++.+++ .+.+++.+|..|+||||+|+..|+.+++++|+ .|++   ++.+|.+|+||||+|+..|+.
T Consensus        79 ~~~~~-------~~~~l~-~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~---~~~~d~~G~TpL~~A~~~g~~  146 (156)
T d1bd8a_          79 GFLDT-------LKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESD---LHRRDARGLTPLELALQRGAQ  146 (156)
T ss_dssp             TCHHH-------HHHHHH-TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC---TTCCCTTSCCHHHHHHHSCCH
T ss_pred             ccccc-------cccccc-cccccccccCCCCeeecccccccccccccccc-cccc---ccccCCCCCCHHHHHHHcCCH
Confidence            99888       999999 77888899999999999999999999999887 5777   888888888888888887776


Q ss_pred             ceec
Q 036662          162 EYYN  165 (316)
Q Consensus       162 ~~v~  165 (316)
                      ++++
T Consensus       147 ~iv~  150 (156)
T d1bd8a_         147 DLVD  150 (156)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.6e-28  Score=217.74  Aligned_cols=186  Identities=24%  Similarity=0.257  Sum_probs=142.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      .++|+.|+..++.++++.|++++.++   +..+.+|.+|||+|+..|+.+++++|+++|+++ +..+..|.||+|.+...
T Consensus       133 ~~~l~~a~~~~~~~~v~~ll~~~~~~---~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~t~l~~~~~~  208 (408)
T d1n11a_         133 FTPLHVAAKYGKVRVAELLLERDAHP---NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP-HSPAWNGYTPLHIAAKQ  208 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS-CCCCTTCCCHHHHHHHT
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCC---CcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcc-cccCCCCCCcchhhhcc
Confidence            35666666666666666666666554   223556666666666666666666666666655 44444444444444333


Q ss_pred             CCccc-----------------------------------------------------------ccccHHHHHHHHHhCC
Q 036662           82 RYVGM-----------------------------------------------------------KSNRIDVLEELVRARP  102 (316)
Q Consensus        82 g~~~~-----------------------------------------------------------~~~~~~iv~~Ll~~~~  102 (316)
                      .+.+.                                                           ..++.+++++|++ .+
T Consensus       209 ~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~-~g  287 (408)
T d1n11a_         209 NQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-HG  287 (408)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-HT
T ss_pred             chhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHH-CC
Confidence            33222                                                           4556677999999 88


Q ss_pred             CCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCC
Q 036662          103 LAASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGF  175 (316)
Q Consensus       103 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~  175 (316)
                      .+++..+..+.||||.++..++.++++++++.|++   +|.+|.+|+||||+|++.|+.++++       ++|.+|++|+
T Consensus       288 ~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~---in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~  364 (408)
T d1n11a_         288 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD---VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGT  364 (408)
T ss_dssp             CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSC
T ss_pred             CccccccccccccchhhcccCcceeeeeecccccc---ccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            88999999999999999999999999999999999   9999999999999999999999999       8999999999


Q ss_pred             CHHHHHHhccCCCcHHHHHHHHHH
Q 036662          176 TAWDILANSKRKMKDWEIGELLRR  199 (316)
Q Consensus       176 TpL~~a~~~~~~~~~~~i~~~Ll~  199 (316)
                      ||||+|++    .++.+++++|..
T Consensus       365 t~L~~A~~----~~~~~iv~~L~~  384 (408)
T d1n11a_         365 TPLAIAKR----LGYISVTDVLKV  384 (408)
T ss_dssp             CHHHHHHH----TTCHHHHHHHHH
T ss_pred             CHHHHHHH----cCCHHHHHHHHH
Confidence            99999999    888999987754

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.5e-28  Score=200.74  Aligned_cols=179  Identities=20%  Similarity=0.122  Sum_probs=153.9

Q ss_pred             CCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcc---cccCCCCc
Q 036662           38 ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAAS---APLIWVET  114 (316)
Q Consensus        38 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~---~~d~~g~t  114 (316)
                      +||||+||..|+.++++.|++.++...+.+|.+|+||||+|+..|+.++       +++|++ .+++++   ..+..|.+
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~i-------v~~Ll~-~ga~~~~~~~~~~~~~~   72 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEI-------TSFLLS-KMENVNLDDYPDDSGWT   72 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHH-------HHHHHT-TCTTCCGGGCCCTTSCC
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccc-------cchhhh-hhccccccccccccccc
Confidence            5899999999999999999998877779999999999999999999988       999999 666654   45778999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCC
Q 036662          115 ILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRK  187 (316)
Q Consensus       115 ~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~  187 (316)
                      |+|+++..+..++++.++..+... .....+..+.||++.++..++.++++       +.+.+|..|+||||+|+.    
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~----  147 (229)
T d1ixva_          73 PFHIACSVGNLEVVKSLYDRPLKP-DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAAS----  147 (229)
T ss_dssp             HHHHHHHHTCHHHHHHHHSSSSCC-CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH----
T ss_pred             cccccccccccccccccccccccc-cccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhh----
Confidence            999999999999999999888651 25567889999999999999998887       677889999999999999    


Q ss_pred             CcHHHHHHHHHHhC-CCcccccCCccccccccccCcccccccc
Q 036662          188 MKDWEIGELLRRAG-AISAKEMQQPATKVSITQTNSLTSHGNN  229 (316)
Q Consensus       188 ~~~~~i~~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (316)
                      .++.++++.|++.| .+.+.....+.+|+..+...+....+..
T Consensus       148 ~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~  190 (229)
T d1ixva_         148 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL  190 (229)
T ss_dssp             HTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cccccccccccccccccccccccccCCchhhhcccccHHHHHH
Confidence            78999999999998 4666677788888887766655554443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=8.3e-29  Score=213.65  Aligned_cols=179  Identities=23%  Similarity=0.241  Sum_probs=156.3

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      +.||||.|+..|+.++|++|++++.+.   ...+..+.||||.|+..|+.++++.|+++|+.. +..|..|.+|+++|+.
T Consensus        73 G~T~L~~A~~~g~~eiv~~Ll~~~~~~---~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~a~~  148 (291)
T d1s70b_          73 GLTALHQACIDDNVDMVKFLVENGANI---NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEE  148 (291)
T ss_dssp             CCBHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCS
T ss_pred             CCcHHHHHHhcCCceeeeeeccccccc---ccccccccccccccccccccchhhcccccCccc-ccccccCccccccccc
Confidence            469999999999999999999999875   344788999999999999999999999999987 8889999999999998


Q ss_pred             cCCcccccccHHHHHHHHHhC--------------------------CCCcccccCCCCcHHHHHHhcCCHHHHHHHHhc
Q 036662           81 KRYVGMKSNRIDVLEELVRAR--------------------------PLAASAPLIWVETILHLCVKHNQLEALKVLLEN  134 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~--------------------------~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~  134 (316)
                      .+..+.       ++.++...                          .......+..|.||||.|+..|+.++++.|++.
T Consensus       149 ~~~~~~-------~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  221 (291)
T d1s70b_         149 EAMEEL-------LQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA  221 (291)
T ss_dssp             HHHHHH-------HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cccchh-------ccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccc
Confidence            888776       55555422                          233445678899999999999999999999999


Q ss_pred             CCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcHHHHHHHHHHhC
Q 036662          135 TDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKDWEIGELLRRAG  201 (316)
Q Consensus       135 g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~g  201 (316)
                      |++   +|.+|.+|+||||+|+..|+.++++       +++.+|++|+||||+|++        +++++|.+.+
T Consensus       222 g~d---in~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e--------~~~~~L~~~~  284 (291)
T d1s70b_         222 RYD---VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE--------DILGYLEELQ  284 (291)
T ss_dssp             TCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS--------GGGHHHHHHH
T ss_pred             eec---ccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH--------HHHHHHHHHh
Confidence            999   9999999999999999999999999       899999999999999976        3555555443

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=7.1e-28  Score=188.14  Aligned_cols=143  Identities=25%  Similarity=0.244  Sum_probs=133.9

Q ss_pred             CCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHH
Q 036662           38 ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILH  117 (316)
Q Consensus        38 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh  117 (316)
                      .||||.||+.|+.++|+.||++|+++ + .|..|+||||+|+..++.++       ++.++. .+......+..+.++++
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~-~-~~~~g~t~L~~a~~~~~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~   72 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPF-T-TDWLGTSPLHLAAQYGHFST-------TEVLLR-AGVSRDARTKVDRTPLH   72 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCC-C-CCTTCCCHHHHHHHHTCHHH-------HHHHHT-TTCCTTCCCTTCCCHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCc-c-cccCCCcccccccccccccc-------cccccc-ccccccccccccccccc
Confidence            59999999999999999999999987 4 69999999999999999988       999988 66666677888999999


Q ss_pred             HHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec-------ccccccCCCCCHHHHHHhccCCCcH
Q 036662          118 LCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCYANGFTAWDILANSKRKMKD  190 (316)
Q Consensus       118 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~~~g~TpL~~a~~~~~~~~~  190 (316)
                      .++...+.+.++++..+|.+   .+.+|.+|+||||+|+..|+.++++       +++.+|++|.||||+|+.    .++
T Consensus        73 ~~~~~~~~~~~~~l~~~~~~---~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~----~g~  145 (153)
T d1awcb_          73 MAASEGHANIVEVLLKHGAD---VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISID----NGN  145 (153)
T ss_dssp             HHHHHTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH----TTC
T ss_pred             cccccccceeeecccccCCc---cccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHH----cCC
Confidence            99999999999999999999   8999999999999999999999999       899999999999999999    899


Q ss_pred             HHHHHHH
Q 036662          191 WEIGELL  197 (316)
Q Consensus       191 ~~i~~~L  197 (316)
                      .|++++|
T Consensus       146 ~eiv~lL  152 (153)
T d1awcb_         146 EDLAEIL  152 (153)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            9999977

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.5e-28  Score=189.28  Aligned_cols=145  Identities=19%  Similarity=0.197  Sum_probs=134.7

Q ss_pred             CHHHHHHhcCCHHHHHHHHhh-CCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHH
Q 036662           39 TPLHVAALLRHKDFAKEILRQ-KPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILH  117 (316)
Q Consensus        39 t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh  117 (316)
                      +.||.||..|+.++|+.||+. +.++ +.+|..|+||||+|+ .|+.++       +++|++ .+.+++..+..|.+|++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~-n~~d~~g~t~L~~A~-~~~~~~-------v~~Ll~-~~~~~~~~~~~~~~~l~   73 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQVMM-FGSTAI-------ALELLK-QGASPNVQDTSGTSPVH   73 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCTTSCCHHHHSC-TTCHHH-------HHHHHH-TTCCTTCCCTTSCCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCC-CccCCCCCccccccc-cccccc-------cccccc-ccccccccccccccccc
Confidence            459999999999999999986 5565 899999999999986 467777       999999 77889999999999999


Q ss_pred             HHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec------ccccccCCCCCHHHHHHhccCCCcHH
Q 036662          118 LCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN------QSECCYANGFTAWDILANSKRKMKDW  191 (316)
Q Consensus       118 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~------~~~~~~~~g~TpL~~a~~~~~~~~~~  191 (316)
                      .++..++.+++++++++|++   +|.+|.+|+||||+|+..|+.++++      +++.+|.+|+||||+|+.    .++.
T Consensus        74 ~~~~~~~~~~~~~~l~~~~~---~n~~~~~~~t~L~~A~~~~~~~i~~~L~~~~~~~~~d~~G~TpL~~A~~----~g~~  146 (156)
T d1bd8a_          74 DAARTGFLDTLKVLVEHGAD---VNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQ----RGAQ  146 (156)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHHH----SCCH
T ss_pred             cccccccccccccccccccc---cccccCCCCeeeccccccccccccccccccccccccCCCCCCHHHHHHH----cCCH
Confidence            99999999999999999999   9999999999999999999999998      899999999999999999    8999


Q ss_pred             HHHHHHHHh
Q 036662          192 EIGELLRRA  200 (316)
Q Consensus       192 ~i~~~Ll~~  200 (316)
                      +++++|+++
T Consensus       147 ~iv~~Ll~h  155 (156)
T d1bd8a_         147 DLVDILQGH  155 (156)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhh
Confidence            999999875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.4e-28  Score=201.85  Aligned_cols=178  Identities=19%  Similarity=0.197  Sum_probs=151.0

Q ss_pred             CCCCHHHHHHhcCCHH----HHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCC
Q 036662           36 PSETPLHVAALLRHKD----FAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIW  111 (316)
Q Consensus        36 ~g~t~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~  111 (316)
                      +|.||||+|+..|+.+    +++.+...|+++ +.+|.+|+||||+|+..|+.++       +++|++ .+.+++.+|..
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~i-n~~d~~g~TpLh~A~~~~~~~i-------v~~L~~-~g~d~~~~d~~   71 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEI-------AEALLG-AGCDPELRDFR   71 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHH-------HHCCCS-CCCCSCCCCTT
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCc-ccCCCCCCcccccccccccccc-------cccccc-ccccccccccc
Confidence            5999999999999864    455566678887 8999999999999999999888       999999 88899999999


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCCc---cccccccCCCCcHHHHHHhcCCcceec-------ccccc-cCCCCCHHHH
Q 036662          112 VETILHLCVKHNQLEALKVLLENTDDS---EFLNAKDDYGMSILHLAVADKQIEYYN-------QSECC-YANGFTAWDI  180 (316)
Q Consensus       112 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~---~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~-~~~g~TpL~~  180 (316)
                      |+||||+|+.+|+.++++.|++.+.+.   ...+....+|.||||.|+..++.+.++       .++.. +.+|.||||+
T Consensus        72 g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~  151 (221)
T d1iknd_          72 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL  151 (221)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred             cccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccc
Confidence            999999999999999999999987652   234556678999999999999998887       45544 4679999999


Q ss_pred             HHhccCCCcHHHHHHHHHHhCCCcccccCCccccccccccCccccc
Q 036662          181 LANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNSLTSH  226 (316)
Q Consensus       181 a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~  226 (316)
                      |+.    .++.+++++|+++|++++.....+.+|..++..++..+.
T Consensus       152 A~~----~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~  193 (221)
T d1iknd_         152 AVD----LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRI  193 (221)
T ss_dssp             HHH----TTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHH
T ss_pred             ccc----cccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHH
Confidence            999    899999999999999999999999999988776655443

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.94  E-value=4.8e-30  Score=227.49  Aligned_cols=180  Identities=14%  Similarity=0.118  Sum_probs=139.2

Q ss_pred             CcHHHHHHHcCCHHHHHH---HHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccC--CCCCcHHH
Q 036662            2 ESKLYEAALAGSVTSLLE---FLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELD--SRKSSALH   76 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh   76 (316)
                      +||||+|+++|+.++++.   |++.+++++   .+|.+|.||||+||..||.++|++|+++|+++ +..|  .+|+||||
T Consensus        91 ~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in---~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g~t~L~  166 (346)
T d2ajaa1          91 EVICFVAAITGCSSALDTLCLLLTSDEIVK---VIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAENYHAFR  166 (346)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC-----CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHHHHHHH
T ss_pred             CcHHHHHHHhCCHHHHHHHHHHHhCCCccc---ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCCCChhH
Confidence            589999999999887765   788898774   45889999999999999999999999999998 5554  46999999


Q ss_pred             HHHHcCCcccccccHHHHHHHHHhCCCC--cccccCCCCcHHHHHHhcCCHHHHHHHHhcCCCcccccccc---------
Q 036662           77 IASQKRYVGMKSNRIDVLEELVRARPLA--ASAPLIWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKD---------  145 (316)
Q Consensus        77 ~A~~~g~~~~~~~~~~iv~~Ll~~~~~~--~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d---------  145 (316)
                      +|+..|+.++       +++|++..+..  .+..+.+|.||+|.|+.+|+.++|++|++.|++   ++..+         
T Consensus       167 ~Aa~~g~~~i-------v~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~---~~~~~~~~~~~~~~  236 (346)
T d2ajaa1         167 LAAENGHLHV-------LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM---LAYAEIHEFEYGEK  236 (346)
T ss_dssp             HHHHTTCHHH-------HHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH---HHHHHHCTTTTTTT
T ss_pred             HHHHHhhHHH-------HHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCC---cchHHHHHHHcCcH
Confidence            9999999999       99999943332  344456678889999999999999999998764   21111         


Q ss_pred             ------------------------C----------------CCCcHHHHHHhcCCcceec------------ccccccCC
Q 036662          146 ------------------------D----------------YGMSILHLAVADKQIEYYN------------QSECCYAN  173 (316)
Q Consensus       146 ------------------------~----------------~g~t~Lh~A~~~~~~~~v~------------~~~~~~~~  173 (316)
                                              .                .+.++|+.|+..++.++++            +.+..+.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~  316 (346)
T d2ajaa1         237 YVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGD  316 (346)
T ss_dssp             THHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTC
T ss_pred             hhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCC
Confidence                                    1                1225566666666666655            23344567


Q ss_pred             CCCHHHHHHhccCCCcHHHHHHHHHH
Q 036662          174 GFTAWDILANSKRKMKDWEIGELLRR  199 (316)
Q Consensus       174 g~TpL~~a~~~~~~~~~~~i~~~Ll~  199 (316)
                      |+||||+|++    .|+.+++++|++
T Consensus       317 g~T~LhlA~~----~Gn~e~v~lLL~  338 (346)
T d2ajaa1         317 ANELLRLALR----LGNQGACALLLS  338 (346)
T ss_dssp             CCHHHHHHHH----HTCTTHHHHHTT
T ss_pred             CCcHHHHHHH----cCcHHHHHHHhC
Confidence            8999999999    899999999985

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=1.3e-26  Score=189.95  Aligned_cols=150  Identities=20%  Similarity=0.159  Sum_probs=130.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcC--------------------------------
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLR--------------------------------   48 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g--------------------------------   48 (316)
                      ++||||+||..|+.++++.|++.+++++.   ++..+.++++.++..+                                
T Consensus        23 G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (209)
T d1ot8a_          23 GETSLHLAARFARADAAKRLLDAGADANS---QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAAR   99 (209)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTC---CCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhhcccccc---cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            57999999999999999999999887633   3555555555555544                                


Q ss_pred             --CHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHH
Q 036662           49 --HKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLE  126 (316)
Q Consensus        49 --~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~  126 (316)
                        .....+.|.+.++++ +.+|..|.|||++++..+..++       ++.+++ .+.+++..|.+|.||||+|+.+|+.+
T Consensus       100 ~~~~~~~~~L~~~~~~~-~~~~~~~~t~l~~~~~~~~~~~-------~~~l~~-~~~~~~~~d~~g~TpL~~A~~~g~~~  170 (209)
T d1ot8a_         100 LAIEGMVEDLITADADI-NAADNSGKTALHWAAAVNNTEA-------VNILLM-HHANRDAQDDKDETPLFLAAREGSYE  170 (209)
T ss_dssp             TTCTTHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHH-------HHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             ccchhhhhhhhhhcccc-cccCCCCCCcchhhcccCccee-------eeeecc-ccccccccccccccccchhccccHHH
Confidence              445667777778887 8889999999999999999888       999999 78889999999999999999999999


Q ss_pred             HHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec
Q 036662          127 ALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN  165 (316)
Q Consensus       127 ~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  165 (316)
                      ++++|+++|++   ++.+|.+|+||||+|++.|+.++|+
T Consensus       171 ~v~~Ll~~gad---~n~~d~~g~Tpl~~A~~~~~~~iv~  206 (209)
T d1ot8a_         171 ASKALLDNFAN---REITDHMDRLPRDVASERLHHDIVR  206 (209)
T ss_dssp             HHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHCCCC---CCCcCCCCCCHHHHHHHcCCHHHHh
Confidence            99999999999   9999999999999999999998875

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=1e-27  Score=179.14  Aligned_cols=108  Identities=19%  Similarity=0.154  Sum_probs=94.6

Q ss_pred             CCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHH
Q 036662           38 ETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILH  117 (316)
Q Consensus        38 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh  117 (316)
                      .|||++|++.|+.++|+.|+++|+++ +.+|..|+||||+|+..|+.++       +++|++ .+.+++.+|.+|+||||
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~-n~~~~~g~t~lh~A~~~~~~~~-------~~~ll~-~g~din~~d~~g~tpLh   73 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEI-------LEFLLL-KGADINAPDKHHITPLL   73 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC-CCCSSSSCCTTHHHHHHSTTTH-------HHHHHH-SSCTTTCCSSSCSCHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc-cccccccccccccccccccccc-------cccccc-ccceeeecccccccchh
Confidence            47889999999999999999998887 8888889999999998888888       888888 78888888888999999


Q ss_pred             HHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHh
Q 036662          118 LCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVA  157 (316)
Q Consensus       118 ~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~  157 (316)
                      +|+.+|+.+++++|+++|++   ++.+|.+|+||||+|..
T Consensus        74 ~A~~~~~~~~v~~Ll~~Gad---~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          74 SAVYEGHVSCVKLLLSKGAD---KTVKGPDGLTALEATDN  110 (118)
T ss_dssp             HHHTTTCCHHHHHHHTTCCC---SSSSSSSTCCCCCTCSS
T ss_pred             hhhhcCchhhhhhhhccccc---ceeeCCCCCCHHHHHhH
Confidence            99999999999999999988   88889999999988744

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8.5e-27  Score=175.97  Aligned_cols=119  Identities=18%  Similarity=0.163  Sum_probs=99.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCC-cHHHHHHH
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKS-SALHIASQ   80 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~-tpLh~A~~   80 (316)
                      .++||.|++.|+.++|++|+++|.++   +.+|..|.||||+|+ .|+.+++++|+++|+++ +.+|..|. ||||+|++
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~---n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANP---NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAAR   78 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCT---TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCcc---ccccccccccccccc-ccccccccccccccccc-ccccccccccccccccc
Confidence            46889999999999999999888876   445888889988764 68899999999998888 66777665 68999998


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHh
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLE  133 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~  133 (316)
                      .|+.++       +++|++ .+.+++.+|.+|+||||+|+++|+.+++++|++
T Consensus        79 ~g~~~~-------v~~Ll~-~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDT-------LVVLHR-AGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHH-------HHHHHH-HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccc-------cccccc-cccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            888888       888888 678888888889999999999999999988875

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.7e-25  Score=183.72  Aligned_cols=177  Identities=19%  Similarity=0.211  Sum_probs=150.6

Q ss_pred             CCCCHHHHHHhcCCHHHHHHHHh----hCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCC
Q 036662           36 PSETPLHVAALLRHKDFAKEILR----QKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIW  111 (316)
Q Consensus        36 ~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~  111 (316)
                      +|+||||+||..|+.++++.|++    .|+++ +.+|..|+||||+|+..|+.++       ++.|++ .++..+..+..
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~i-n~~d~~g~TpL~~A~~~~~~~i-------v~~Ll~-~ga~~~~~~~~   72 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSV-------VRLLVT-AGASPMALDRH   72 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHH-------HHHHHH-TTCCTTCCCTT
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CccCCCCCccceehhccccccc-------cccccc-ccccccccccc
Confidence            69999999999999999999885    78888 8999999999999999999988       999999 88999999999


Q ss_pred             CCcHHHHHHhcCCHHHHHHHHhcCCCc-cccccccCCCCcHHHHHHhcCCcceec--------ccccccCCCCCHHHHHH
Q 036662          112 VETILHLCVKHNQLEALKVLLENTDDS-EFLNAKDDYGMSILHLAVADKQIEYYN--------QSECCYANGFTAWDILA  182 (316)
Q Consensus       112 g~t~Lh~A~~~g~~~~v~~Ll~~g~~~-~~~~~~d~~g~t~Lh~A~~~~~~~~v~--------~~~~~~~~g~TpL~~a~  182 (316)
                      |.++++.|...++.++++.+....... ...+..+..+.++||.+.........+        .....+..|.+||+.|+
T Consensus        73 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~  152 (228)
T d1k1aa_          73 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV  152 (228)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred             cccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHH
Confidence            999999999999999999887654332 135667788999999999877666555        34456678999999999


Q ss_pred             hccCCCcHHHHHHHHHHhCCCcccccCCccccccccccCcccc
Q 036662          183 NSKRKMKDWEIGELLRRAGAISAKEMQQPATKVSITQTNSLTS  225 (316)
Q Consensus       183 ~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~  225 (316)
                      .    .+..++.+.++++|.+.......+.++...+..+....
T Consensus       153 ~----~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~  191 (228)
T d1k1aa_         153 E----NNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP  191 (228)
T ss_dssp             H----TTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH
T ss_pred             H----hhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHH
Confidence            9    88899999999999999988888888877665554443

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.7e-27  Score=178.04  Aligned_cols=107  Identities=16%  Similarity=0.097  Sum_probs=101.7

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHc
Q 036662            2 ESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQK   81 (316)
Q Consensus         2 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~   81 (316)
                      ||||++|++.|+.++|+.|+++|.++   +.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~---n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCC---CCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcc---cccccccccccccccccccccccccccccccee-eecccccccchhhhhhc
Confidence            79999999999999999999999887   455899999999999999999999999999998 89999999999999999


Q ss_pred             CCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHH
Q 036662           82 RYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCV  120 (316)
Q Consensus        82 g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~  120 (316)
                      |+.++       +++|++ .+++++.+|.+|+||||+|.
T Consensus        79 ~~~~~-------v~~Ll~-~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          79 GHVSC-------VKLLLS-KGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             TCCHH-------HHHHHT-TCCCSSSSSSSTCCCCCTCS
T ss_pred             Cchhh-------hhhhhc-ccccceeeCCCCCCHHHHHh
Confidence            99998       999999 88999999999999999984

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.6e-26  Score=174.44  Aligned_cols=116  Identities=16%  Similarity=0.088  Sum_probs=106.2

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCC-cH
Q 036662           37 SETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVE-TI  115 (316)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~-t~  115 (316)
                      +.++||+|+..|+.++|++|+++|+++ +.+|..|.||||+|+ .|+.++       +++|++ .+.+++.+|..|. ||
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~-n~~~~~g~t~l~~a~-~g~~~~-------v~~Ll~-~ga~~~~~~~~~~~~~   72 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARV-------AELLLL-HGAEPNCADPATLTRP   72 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHH-------HHHHHT-TTCCCCCCCTTTCCCH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcc-ccccccccccccccc-cccccc-------cccccc-cccccccccccccccc
Confidence            568999999999999999999999998 899999999999775 677777       999999 8888998888876 69


Q ss_pred             HHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec
Q 036662          116 LHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN  165 (316)
Q Consensus       116 Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  165 (316)
                      ||+|+++|+.+++++|+++|++   ++.+|.+|+||||+|+..|+.++++
T Consensus        73 L~~A~~~g~~~~v~~Ll~~ga~---~~~~d~~G~T~l~~A~~~g~~~~v~  119 (125)
T d1bi7b_          73 VHDAAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHRDVAR  119 (125)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTCC---SSCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             cccccccccccccccccccccc---cccccCCCCCHHHHHHHcCCHHHHH
Confidence            9999999999999999999999   9999999999999999988877664

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.5e-26  Score=199.57  Aligned_cols=150  Identities=12%  Similarity=0.021  Sum_probs=105.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCH---HHHHHHHhhCCCcccccCCCCCcHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHK---DFAKEILRQKPGIAGELDSRKSSALHI   77 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~---~~v~~Ll~~~~~~~~~~d~~g~tpLh~   77 (316)
                      ++||||+||..|+.++|+.|+++|+++   +.+|..|+||||.||..++.   +.++.|++...+.....|..|+||||.
T Consensus       107 G~T~LH~Aa~~g~~~~v~~Ll~~gad~---~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~  183 (301)
T d1sw6a_         107 GNTPLHWLTSIANLELVKHLVKHGSNR---LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHH  183 (301)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCT---TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCC---CcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHH
Confidence            469999999999999999999999987   44589999999999987752   222333333222236779999999999


Q ss_pred             HHHcCCccc----ccccHH-HHHHHHHhCCCC------------------------------------cccccCCCCcHH
Q 036662           78 ASQKRYVGM----KSNRID-VLEELVRARPLA------------------------------------ASAPLIWVETIL  116 (316)
Q Consensus        78 A~~~g~~~~----~~~~~~-iv~~Ll~~~~~~------------------------------------~~~~d~~g~t~L  116 (316)
                      ++..+..+.    .+...+ ++..+++.....                                    ++.+|.+|+|||
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpL  263 (301)
T d1sw6a_         184 IIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL  263 (301)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHH
T ss_pred             HHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHH
Confidence            987776432    111111 123333322221                                    466677788888


Q ss_pred             HHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHH
Q 036662          117 HLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAV  156 (316)
Q Consensus       117 h~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~  156 (316)
                      |+|+++|+.++|++|+++|++   ++.+|.+|.||||+|+
T Consensus       264 h~A~~~g~~~iv~~Ll~~GAd---~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         264 NIAARLGNISIVDALLDYGAD---PFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHCCHHHHHHHHHTTCC---TTCCCTTSCCGGGGTC
T ss_pred             HHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHcC
Confidence            888888888888888888877   7777778888887774

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.1e-25  Score=195.37  Aligned_cols=172  Identities=16%  Similarity=0.070  Sum_probs=122.7

Q ss_pred             CCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCC
Q 036662           34 NCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVE  113 (316)
Q Consensus        34 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~  113 (316)
                      |..|+||||+||..|+.++|++|+++|+++ +.+|..|+||||.|+..++..- .+.   ++.+++........+|..|+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~-~~~---~~~ll~~l~~~~~~~d~~g~  178 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYD-SGT---FEALLDYLYPCLILEDSMNR  178 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHH-TTC---HHHHHHHHGGGGGEECTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchh-hhh---HHHHHHHHhhhhhhcccccC
Confidence            788999999999999999999999999998 8999999999999999876311 011   34444433445777899999


Q ss_pred             cHHHHHHhcCC----HH--------HHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec----------cccccc
Q 036662          114 TILHLCVKHNQ----LE--------ALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN----------QSECCY  171 (316)
Q Consensus       114 t~Lh~A~~~g~----~~--------~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~----------~~~~~~  171 (316)
                      ||||+++..+.    ..        +++++.+.+..+  ....+..+.++++.+........+.          .+|.+|
T Consensus       179 t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D  256 (301)
T d1sw6a_         179 TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRP--IQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQD  256 (301)
T ss_dssp             CHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCC--EEEC----------------CHHHHHCSHHHHHHHTTTCCC
T ss_pred             CHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcc--hhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCC
Confidence            99999886543    22        344555554331  4455666777777766555444333          489999


Q ss_pred             CCCCCHHHHHHhccCCCcHHHHHHHHHHhCCCcccccCCcccccc
Q 036662          172 ANGFTAWDILANSKRKMKDWEIGELLRRAGAISAKEMQQPATKVS  216 (316)
Q Consensus       172 ~~g~TpL~~a~~~~~~~~~~~i~~~Ll~~ga~~~~~~~~~~~~~~  216 (316)
                      .+|+||||+|++    .++.+++++|+++||+++..+..+.+|.+
T Consensus       257 ~~G~TpLh~A~~----~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~  297 (301)
T d1sw6a_         257 SNGDTCLNIAAR----LGNISIVDALLDYGADPFIANKSGLRPVD  297 (301)
T ss_dssp             TTSCCHHHHHHH----HCCHHHHHHHHHTTCCTTCCCTTSCCGGG
T ss_pred             CCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            999999999999    89999999999999999999999998873

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.8e-24  Score=185.26  Aligned_cols=127  Identities=24%  Similarity=0.188  Sum_probs=93.8

Q ss_pred             CCCHHHHHHhcCCHHHHHHHHhh-CCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcH
Q 036662           37 SETPLHVAALLRHKDFAKEILRQ-KPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETI  115 (316)
Q Consensus        37 g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~  115 (316)
                      |.||||+|+..|+.+++++|+++ |+++ +..|..|.++++.+...+.   ..+..+++++|++ ++++++.+|.+|.||
T Consensus       148 g~t~L~~A~~~~~~~~~~~Ll~~~~~~i-~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~Li~-~ga~~n~~~~~g~t~  222 (285)
T d1wdya_         148 GATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSD---DSDVEAITHLLLD-HGADVNVRGERGKTP  222 (285)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSC---TTTHHHHHHHHHH-TTCCSSCCCTTSCCH
T ss_pred             CchHHHHHHHcCCHHHHHHHHhccCCCc-ccccCCCCccccccccccc---chHHHHHHHHHHH-CCCCCCccCCCCCCc
Confidence            44455555555555555554432 3343 4444444444444433332   3344567999999 888999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHh-cCCCccccccccCCCCcHHHHHHhcCCcceec-------cccccc
Q 036662          116 LHLCVKHNQLEALKVLLE-NTDDSEFLNAKDDYGMSILHLAVADKQIEYYN-------QSECCY  171 (316)
Q Consensus       116 Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~-------~~~~~~  171 (316)
                      ||+|+..|+.+++++|++ .|++   +|.+|.+|+||||+|++.|+.++++       ++|.+|
T Consensus       223 L~~a~~~~~~~~v~~lL~~~g~d---in~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         223 LILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHSSSCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             cchhhhcCcHHHHHHHHHcCCCC---CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            999999999999999997 4888   9999999999999999999999998       777766

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.1e-24  Score=169.95  Aligned_cols=125  Identities=18%  Similarity=0.177  Sum_probs=112.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHcChhhHHhh---hcCCCCCCHHHHHHhc---CCHHHHHHHHhhCCCcccccCCCCCcHHHH
Q 036662            4 KLYEAALAGSVTSLLEFLQKDRLILERA---AMNCPSETPLHVAALL---RHKDFAKEILRQKPGIAGELDSRKSSALHI   77 (316)
Q Consensus         4 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~   77 (316)
                      .|+.|++.+++..+..++..|.++....   ..+..|+||||+|+..   |+.+++++|+++|+++ +.+|..|+||||+
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhcccccc
Confidence            4678999999999999999987654321   2356799999999975   6889999999999998 9999999999999


Q ss_pred             HHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcCCC
Q 036662           78 ASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENTDD  137 (316)
Q Consensus        78 A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~  137 (316)
                      |+..|+.++       +++|++ ++++++.+|.+|+||||+|+++|+.+++++|++.++.
T Consensus        88 A~~~~~~~~-------v~~Ll~-~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          88 CCLTDNAEC-------LKLLLR-GKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCHHH-------HHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccccccc-------cccccc-cCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999988       999999 8999999999999999999999999999999997765

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.2e-25  Score=169.22  Aligned_cols=119  Identities=19%  Similarity=0.161  Sum_probs=85.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcC
Q 036662            3 SKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKR   82 (316)
Q Consensus         3 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g   82 (316)
                      ++|+.|+..|+.++|+.|+++|.++   +.+|.+|+||||+|+..|+.+++++|++.|+++ +.+|.+|+||||+|+.+|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~---n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP---SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC---CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc---ccccccccccccccccccccccccccccccccc-ccccccCcccccccchhh
Confidence            4677777777777777777777765   344777777777777777777777777777776 777777777777777777


Q ss_pred             CcccccccHHHHHHHHHhCCCCcccccC-CCCcHHHHH--HhcCCHHHHHHHHh
Q 036662           83 YVGMKSNRIDVLEELVRARPLAASAPLI-WVETILHLC--VKHNQLEALKVLLE  133 (316)
Q Consensus        83 ~~~~~~~~~~iv~~Ll~~~~~~~~~~d~-~g~t~Lh~A--~~~g~~~~v~~Ll~  133 (316)
                      +.++       +++|++ ++++++..+. .|+||++++  +.+|+.+++++|++
T Consensus        79 ~~~~-------v~~Ll~-~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          79 NVQV-------CKFLVE-SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             CHHH-------HHHHHH-TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHH-------HHHHHH-cCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            7776       777777 6666665553 466665554  45677777777765

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.4e-25  Score=168.23  Aligned_cols=114  Identities=17%  Similarity=0.037  Sum_probs=100.4

Q ss_pred             CHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHH
Q 036662           39 TPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHL  118 (316)
Q Consensus        39 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~  118 (316)
                      ++||.|+..|+.++|+.|+++|+|+ +.+|.+|+||||+|+..|+.++       +++|++ .+.+++.+|.+|+||||+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~-n~~d~~g~t~Lh~A~~~~~~~~-------~~~ll~-~g~~~~~~d~~g~tpLh~   73 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVCAGHTEI-------VKFLVQ-FGVNVNAADSDGWTPLHC   73 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHHHTCHHH-------HHHHHH-HTCCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCc-cccccccccccccccccccccc-------cccccc-cccccccccccCcccccc
Confidence            5799999999999999999999998 8999999999999999999988       999999 788999999999999999


Q ss_pred             HHhcCCHHHHHHHHhcCCCccccccccC-CCCcHHHHHH--hcCCccee
Q 036662          119 CVKHNQLEALKVLLENTDDSEFLNAKDD-YGMSILHLAV--ADKQIEYY  164 (316)
Q Consensus       119 A~~~g~~~~v~~Ll~~g~~~~~~~~~d~-~g~t~Lh~A~--~~~~~~~v  164 (316)
                      |+.+|+.+++++|+++|++   ++.++. +|+||++++.  ..|+.+++
T Consensus        74 A~~~g~~~~v~~Ll~~ga~---v~~~~~~~~~~~~~~~~a~~~g~~eiv  119 (130)
T d1ycsb1          74 AASCNNVQVCKFLVESGAA---VFAMTYSDMQTAADKCEEMEEGYTQCS  119 (130)
T ss_dssp             HHHTTCHHHHHHHHHTTCC---TTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred             cchhhHHHHHHHHHHcCCC---cccccCCCCCCHHHHHHHHHcChHHHH
Confidence            9999999999999999999   887764 4777765543  33444444

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.88  E-value=7.1e-26  Score=200.39  Aligned_cols=125  Identities=14%  Similarity=0.100  Sum_probs=106.7

Q ss_pred             hcCCCCCCHHHHHHhcCCHHHHHH---HHhhCCCcccccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccc
Q 036662           32 AMNCPSETPLHVAALLRHKDFAKE---ILRQKPGIAGELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAP  108 (316)
Q Consensus        32 ~~~~~g~t~Lh~A~~~g~~~~v~~---Ll~~~~~~~~~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~  108 (316)
                      .++..|.||||+||.+||.+++++   |++.|+++ +.+|.+|+||||+||+.|+.++       |++|++ .+++++..
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~i-n~~~~~g~taL~~Aa~~G~~~~-------v~~Ll~-~g~~~~~~  155 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-KVIQAENYQAFRLAAENGHLHV-------LNRLCE-LAPTEIMA  155 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-C--CHHHHHHHHHHHHTTCHHH-------HHHHHH-SCTTTHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcc-cccCCCCCCHHHHHHHCCCHHH-------HHHHHH-cCCCcccc
Confidence            357789999999999999877665   78999998 8899999999999999999999       999999 77777766


Q ss_pred             c--CCCCcHHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCCcceec
Q 036662          109 L--IWVETILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQIEYYN  165 (316)
Q Consensus       109 d--~~g~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~  165 (316)
                      +  .+|+||||+|+.+|+.++|++|++.|+++...+..+.+|.||+|.|+..|+.++++
T Consensus       156 ~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~  214 (346)
T d2ajaa1         156 MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN  214 (346)
T ss_dssp             HHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred             ccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHH
Confidence            5  46999999999999999999999999874445666777889999999999999888

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=1.8e-22  Score=157.23  Aligned_cols=113  Identities=19%  Similarity=0.182  Sum_probs=93.1

Q ss_pred             HHHHHHhcCCHHHHHHHHhhCCCccc-----ccCCCCCcHHHHHHHcCCcccccccHHHHHHHHHhCCCCcccccCCCCc
Q 036662           40 PLHVAALLRHKDFAKEILRQKPGIAG-----ELDSRKSSALHIASQKRYVGMKSNRIDVLEELVRARPLAASAPLIWVET  114 (316)
Q Consensus        40 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~-----~~d~~g~tpLh~A~~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t  114 (316)
                      .|+.|++.+++..+..++..|.++..     ..+..|+||||+|++.+..    |..+++++|++ ++.+++.+|.+|+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~----~~~~iv~~Ll~-~gadin~~d~~g~T   83 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDR----TSLHIVDFLVQ-NSGNLDKQTGKGST   83 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCT----TTHHHHHHHHH-HCSCTTCCCTTCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCC----CCHHHHHHHHH-cCCChhhhhhhhcc
Confidence            46688899999999999999987622     2377899999999986432    22444999999 78889999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHhcCCCccccccccCCCCcHHHHHHhcCC
Q 036662          115 ILHLCVKHNQLEALKVLLENTDDSEFLNAKDDYGMSILHLAVADKQ  160 (316)
Q Consensus       115 ~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~d~~g~t~Lh~A~~~~~  160 (316)
                      |||+|+..|+.+++++|+++|++   ++.+|.+|+||||+|++.|+
T Consensus        84 pLh~A~~~~~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~  126 (154)
T d1dcqa1          84 ALHYCCLTDNAECLKLLLRGKAS---IEIANESGETPLDIAKRLKH  126 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTC
T ss_pred             ccccccccccccccccccccCcc---ccccCCCCCCHHHHHHHcCC
Confidence            99999999999999999999998   88787777777777666443

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.4e-22  Score=155.27  Aligned_cols=123  Identities=15%  Similarity=0.086  Sum_probs=115.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcChhhHHhhhcCCCCCCHHHHHHhcCCHHHHHHHHhhCCCcccccCCCCCcHHHHHHH
Q 036662            1 MESKLYEAALAGSVTSLLEFLQKDRLILERAAMNCPSETPLHVAALLRHKDFAKEILRQKPGIAGELDSRKSSALHIASQ   80 (316)
Q Consensus         1 m~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A~~   80 (316)
                      +.||||.|+ .|+.++++.|+++++++   +.++..|.++|+.++..|+.+.++.|++.+.++ +..|..|.+|||+|+.
T Consensus        34 g~TpL~~A~-~~~~ei~~~Ll~~~a~~---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~  108 (156)
T d1ihba_          34 GRTALQVMK-LGNPEIARRLLLRGANP---DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAK  108 (156)
T ss_dssp             SCCHHHHCC-SSCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             ccccccccc-ccccccccccccccccc---ccccccCcccccccccccccccccccccccccc-cccccccccccccccc
Confidence            479999886 79999999999999887   445889999999999999999999999999998 8899999999999999


Q ss_pred             cCCcccccccHHHHHHHHHhCCCCcccccCCCCcHHHHHHhcCCHHHHHHHHhcC
Q 036662           81 KRYVGMKSNRIDVLEELVRARPLAASAPLIWVETILHLCVKHNQLEALKVLLENT  135 (316)
Q Consensus        81 ~g~~~~~~~~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~g  135 (316)
                      .++.++       ++.|+++.+.+.+.+|.+|+||||+|+++|+.+++++|+++|
T Consensus       109 ~~~~~~-------~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         109 EGHLRV-------VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             TTCHHH-------HHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccc-------cccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999998       999999888789999999999999999999999999999987