Citrus Sinensis ID: 036688

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220---
MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS
cccEEEEEEccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEEEcccccccccHHHHHHHHHHHcccccccEEEEEEccccccccccccccHHcHHHHHccccEEEEEEHHHHHHHHHHcccccccc
ccEEEEEEEccccHHHcHHHHHHHHHHcccccccccccccccccccccEEEEEEcccccccccEEEEEEcccccHHEEcccccccccccccEEEcccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHccccccEEEEEEcccccccEEEccccHEEEHHHEEccccEEEEEccHHHHHHHHHcccccccc
mreilhiqggqcgnqiGSKFWEVICdehgvdptgkyrgdgvedlQLERINVYYneasggryvpravlmdlepgtmdsirsgpygqifrpdnfvfgqsgagnnwakghytEGAELIDAVLDVVRKEAencdclqgfqvchslgggtgsgmGTLLISKIReeypdrmmmtfsvfpspkvsdtvvepynATLSVHQLVENadecmvldneaLYDICFRTLKLSTPS
mreilhiqggqcgnqiGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYyneasggryvpRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSlgggtgsgmGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS
MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHslgggtgsgmgtllISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS
***ILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLK*****
MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGD****LQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLS***
MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS
MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query223 2.2.26 [Sep-21-2011]
P18025 446 Tubulin beta-1 chain OS=Z N/A no 0.991 0.495 0.910 1e-120
Q6VAF6 450 Tubulin beta-6 chain OS=G N/A no 1.0 0.495 0.964 1e-119
P12411 447 Tubulin beta-1 chain OS=A yes no 0.995 0.496 0.968 1e-119
P46263 451 Tubulin beta-1 chain OS=S N/A no 1.0 0.494 0.950 1e-118
P46264 452 Tubulin beta-2 chain OS=S N/A no 1.0 0.493 0.950 1e-118
P29513 449 Tubulin beta-5 chain OS=A yes no 0.995 0.494 0.959 1e-118
Q40665 446 Tubulin beta-3 chain OS=O yes no 0.991 0.495 0.946 1e-117
Q9ZRB0 445 Tubulin beta-3 chain OS=T N/A no 0.991 0.496 0.941 1e-116
Q6VAF7 445 Tubulin beta-5 chain OS=G N/A no 0.991 0.496 0.946 1e-116
P37832 444 Tubulin beta-7 chain OS=O no no 0.991 0.497 0.941 1e-116
>sp|P18025|TBB1_MAIZE Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1 Back     alignment and function desciption
 Score =  431 bits (1107), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 203/223 (91%), Positives = 213/223 (95%), Gaps = 2/223 (0%)

Query: 1   MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
           MREILHIQGGQCGNQIG+KFWEV+C EHG+D TG+Y GD   DLQLER+NVYYNEAS GR
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCAEHGIDATGRYGGDS--DLQLERVNVYYNEASCGR 58

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
           +VPRAVLMDLEPGTMDS+RSGPYG IFRPDNFVFGQSGAGNN AKGHYTEGAELID+VLD
Sbjct: 59  FVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNSAKGHYTEGAELIDSVLD 118

Query: 121 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDT 180
           VVRKEAENCDCLQGFQVCHSLGGGTGS MGTLLISKIREEYPDRMM+TFSVFPSPKVSDT
Sbjct: 119 VVRKEAENCDCLQGFQVCHSLGGGTGSAMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 178

Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
           VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TPS
Sbjct: 179 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPS 221
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Zea mays (taxid: 4577)
>sp|Q6VAF6|TBB6_GOSHI Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV=1 Back     alignment and function description
>sp|P12411|TBB1_ARATH Tubulin beta-1 chain OS=Arabidopsis thaliana GN=TUBB1 PE=2 SV=1 Back     alignment and function description
>sp|P46263|TBB1_SOLTU Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1 Back     alignment and function description
>sp|P46264|TBB2_SOLTU Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1 Back     alignment and function description
>sp|P29513|TBB5_ARATH Tubulin beta-5 chain OS=Arabidopsis thaliana GN=TUBB5 PE=2 SV=1 Back     alignment and function description
>sp|Q40665|TBB3_ORYSJ Tubulin beta-3 chain OS=Oryza sativa subsp. japonica GN=TUBB3 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZRB0|TBB3_WHEAT Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3 PE=2 SV=1 Back     alignment and function description
>sp|Q6VAF7|TBB5_GOSHI Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV=1 Back     alignment and function description
>sp|P37832|TBB7_ORYSJ Tubulin beta-7 chain OS=Oryza sativa subsp. japonica GN=TUBB7 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query223
255538950 448 tubulin beta chain, putative [Ricinus co 1.0 0.497 0.973 1e-119
135449 446 RecName: Full=Tubulin beta-1 chain; AltN 0.991 0.495 0.910 1e-118
225457963 448 PREDICTED: tubulin beta-1 chain [Vitis v 1.0 0.497 0.964 1e-118
54036489 450 RecName: Full=Tubulin beta-6 chain; AltN 1.0 0.495 0.964 1e-118
166343831 450 beta-tubulin 11 [Gossypium hirsutum] 1.0 0.495 0.964 1e-118
15222873 447 tubulin beta [Arabidopsis thaliana] gi|1 0.995 0.496 0.968 1e-117
297842325 447 tubulin beta-1 chain [Arabidopsis lyrata 0.995 0.496 0.968 1e-117
312281927 447 unnamed protein product [Thellungiella h 0.995 0.496 0.968 1e-117
4105696 448 beta tubulin 1 [Arabidopsis thaliana] 0.995 0.495 0.968 1e-117
356564369 449 PREDICTED: tubulin beta-1 chain-like [Gl 1.0 0.496 0.955 1e-117
>gi|255538950|ref|XP_002510540.1| tubulin beta chain, putative [Ricinus communis] gi|223551241|gb|EEF52727.1| tubulin beta chain, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  432 bits (1110), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/223 (97%), Positives = 220/223 (98%)

Query: 1   MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
           MREILH+QGGQCGNQIGSKFWEVICDEHGVDPTG+Y GDG  DLQLERINVYYNEASGGR
Sbjct: 1   MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDGSSDLQLERINVYYNEASGGR 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
           YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD
Sbjct: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120

Query: 121 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDT 180
           VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMM+TFSVFPSPKVSDT
Sbjct: 121 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 180

Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
           VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS
Sbjct: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|135449|sp|P18025.1|TBB1_MAIZE RecName: Full=Tubulin beta-1 chain; AltName: Full=Beta-1-tubulin gi|295851|emb|CAA37060.1| beta 1 tubulin [Zea mays] Back     alignment and taxonomy information
>gi|225457963|ref|XP_002275306.1| PREDICTED: tubulin beta-1 chain [Vitis vinifera] Back     alignment and taxonomy information
>gi|54036489|sp|Q6VAF6.1|TBB6_GOSHI RecName: Full=Tubulin beta-6 chain; AltName: Full=Beta-6-tubulin gi|37529496|gb|AAQ92666.1| beta-tubulin 6 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|166343831|gb|ABY86658.1| beta-tubulin 11 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|15222873|ref|NP_177706.1| tubulin beta [Arabidopsis thaliana] gi|135442|sp|P12411.1|TBB1_ARATH RecName: Full=Tubulin beta-1 chain; AltName: Full=Beta-1-tubulin gi|8778821|gb|AAF26774.2|AC007396_23 T4O12.1 [Arabidopsis thaliana] gi|9369357|gb|AAF87106.1|AC006434_2 F10A5.3 [Arabidopsis thaliana] gi|166922|gb|AAA32893.1| beta-1 tubulin [Arabidopsis thaliana] gi|332197637|gb|AEE35758.1| tubulin beta [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297842325|ref|XP_002889044.1| tubulin beta-1 chain [Arabidopsis lyrata subsp. lyrata] gi|297334885|gb|EFH65303.1| tubulin beta-1 chain [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|312281927|dbj|BAJ33829.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|4105696|gb|AAD02498.1| beta tubulin 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356564369|ref|XP_003550427.1| PREDICTED: tubulin beta-1 chain-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query223
TAIR|locus:2005724 447 TUB1 "tubulin beta-1 chain" [A 0.995 0.496 0.905 3.4e-109
TAIR|locus:2198661 449 TUB5 "tubulin beta-5 chain" [A 0.995 0.494 0.896 1e-107
TAIR|locus:2177003 449 TUB6 "beta-6 tubulin" [Arabido 0.991 0.492 0.869 4e-106
TAIR|locus:2172254 450 TUB2 "tubulin beta chain 2" [A 0.991 0.491 0.865 7.5e-105
TAIR|locus:2172214 450 TUB3 "tubulin beta chain 3" [A 0.991 0.491 0.865 7.5e-105
TAIR|locus:505006632 449 TUB8 "tubulin beta 8" [Arabido 0.991 0.492 0.856 2.5e-104
TAIR|locus:2043082 449 TUB7 "tubulin beta-7 chain" [A 0.991 0.492 0.869 8.6e-104
TAIR|locus:2133084 444 TUB9 "tubulin beta-9 chain" [A 0.991 0.497 0.856 4.7e-103
TAIR|locus:2158755 444 TUB4 "tubulin beta chain 4" [A 0.991 0.497 0.852 2e-102
GENEDB_PFALCIPARUM|PF10_0084 445 PF10_0084 "tubulin beta chain, 0.991 0.496 0.798 1.2e-97
TAIR|locus:2005724 TUB1 "tubulin beta-1 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
 Identities = 202/223 (90%), Positives = 205/223 (91%)

Query:     1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
             MREILH+QGGQCGNQIGSKFWEVICDEHGVDPTG+Y GD   DLQLERINVYYNEASGGR
Sbjct:     1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGDSA-DLQLERINVYYNEASGGR 59

Query:    61 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
             YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD
Sbjct:    60 YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 119

Query:   121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
             VVRKEAENCDCLQGFQVCH              ISKIREEYPDRMM+TFSVFPSPKVSDT
Sbjct:   120 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 179

Query:   181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
             VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS
Sbjct:   180 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 222
GO:0003924 "GTPase activity" evidence=IEA
GO:0005198 "structural molecule activity" evidence=IEA;ISS
GO:0005525 "GTP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005874 "microtubule" evidence=IEA
GO:0006184 "GTP catabolic process" evidence=IEA
GO:0007017 "microtubule-based process" evidence=IEA
GO:0007018 "microtubule-based movement" evidence=IEA
GO:0043234 "protein complex" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
GO:0009416 "response to light stimulus" evidence=IEP
GO:0009826 "unidimensional cell growth" evidence=IEP
TAIR|locus:2198661 TUB5 "tubulin beta-5 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2177003 TUB6 "beta-6 tubulin" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172254 TUB2 "tubulin beta chain 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172214 TUB3 "tubulin beta chain 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006632 TUB8 "tubulin beta 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043082 TUB7 "tubulin beta-7 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133084 TUB9 "tubulin beta-9 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158755 TUB4 "tubulin beta chain 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF10_0084 PF10_0084 "tubulin beta chain, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q40665TBB3_ORYSJNo assigned EC number0.94610.99100.4955yesno
Q41785TBB8_MAIZENo assigned EC number0.92370.99100.4966N/Ano
Q41783TBB6_MAIZENo assigned EC number0.92370.99100.4955N/Ano
P37392TBB1_LUPALNo assigned EC number0.91920.99100.4944N/Ano
P11482TBB1_VOLCANo assigned EC number0.90580.99100.4988N/Ano
Q40106TBB2_LUPALNo assigned EC number0.91920.99100.4933N/Ano
Q9ZPN7TBB4_ELEINNo assigned EC number0.92820.99100.4955N/Ano
Q9ZRA9TBB4_WHEATNo assigned EC number0.93720.99100.4966N/Ano
Q9ZRA8TBB5_WHEATNo assigned EC number0.92820.99100.4944N/Ano
Q41784TBB7_MAIZENo assigned EC number0.93720.99100.4966N/Ano
P93176TBB_HORVUNo assigned EC number0.92370.99100.4944N/Ano
Q9ZPP0TBB1_ELEINNo assigned EC number0.93720.99100.4966N/Ano
Q6VAF8TBB3_GOSHINo assigned EC number0.92820.99100.5139N/Ano
Q39445TBB_CICARNo assigned EC number0.93721.00.4966N/Ano
P29500TBB1_PEANo assigned EC number0.92370.99100.4911N/Ano
P29501TBB2_PEANo assigned EC number0.93210.98200.4899N/Ano
O04386TBB_CHLINNo assigned EC number0.91030.99100.4988N/Ano
P46263TBB1_SOLTUNo assigned EC number0.95081.00.4944N/Ano
P46264TBB2_SOLTUNo assigned EC number0.95081.00.4933N/Ano
P29513TBB5_ARATHNo assigned EC number0.95960.99550.4944yesno
P18025TBB1_MAIZENo assigned EC number0.91030.99100.4955N/Ano
P18026TBB2_MAIZENo assigned EC number0.92370.99100.4977N/Ano
Q39697TBB2_DAUCANo assigned EC number0.91030.99100.4977N/Ano
Q9ZRB2TBB1_WHEATNo assigned EC number0.92820.99100.4966N/Ano
Q43697TBB5_MAIZENo assigned EC number0.92820.99100.4966N/Ano
Q9ZPN8TBB3_ELEINNo assigned EC number0.93720.99100.4955N/Ano
Q9ZPN9TBB2_ELEINNo assigned EC number0.92370.99100.4933N/Ano
Q9ZRB1TBB2_WHEATNo assigned EC number0.92370.99100.4944N/Ano
P04690TBB_CHLRENo assigned EC number0.90580.99100.4988N/Ano
Q6VAF6TBB6_GOSHINo assigned EC number0.96411.00.4955N/Ano
Q6VAF7TBB5_GOSHINo assigned EC number0.94610.99100.4966N/Ano
Q6VAF4TBB9_GOSHINo assigned EC number0.91920.99100.4966N/Ano
P12411TBB1_ARATHNo assigned EC number0.96860.99550.4966yesno
P28551TBB3_SOYBNNo assigned EC number0.94170.99100.5416yesno
Q9ZRB0TBB3_WHEATNo assigned EC number0.94170.99100.4966N/Ano
P46265TBB5_ORYSJNo assigned EC number0.93720.99100.4944yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
PLN00220 447 PLN00220, PLN00220, tubulin beta chain; Provisiona 0.0
cd02187 425 cd02187, beta_tubulin, The tubulin superfamily inc 0.0
PTZ00010 445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 1e-176
COG5023 443 COG5023, COG5023, Tubulin [Cytoskeleton] 1e-136
cd02186 434 cd02186, alpha_tubulin, The tubulin superfamily in 1e-90
PTZ00335 448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 2e-88
cd06059 382 cd06059, Tubulin, The tubulin superfamily includes 3e-86
cd02188 431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 2e-85
PLN00221 450 PLN00221, PLN00221, tubulin alpha chain; Provision 1e-82
cd00286 328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 9e-82
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 8e-80
PLN00222 454 PLN00222, PLN00222, tubulin gamma chain; Provision 4e-70
PTZ00387 465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 2e-64
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 4e-63
cd02190 379 cd02190, epsilon_tubulin, The tubulin superfamily 8e-60
cd02189 446 cd02189, delta_tubulin, The tubulin superfamily in 1e-58
cd02202 349 cd02202, FtsZ_type2, FtsZ is a GTPase that is simi 3e-10
cd06060 493 cd06060, misato, Human Misato shows similarity wit 5e-07
cd02191 303 cd02191, FtsZ, FtsZ is a GTPase that is similar to 0.002
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information 
 Score =  522 bits (1346), Expect = 0.0
 Identities = 211/223 (94%), Positives = 218/223 (97%), Gaps = 2/223 (0%)

Query: 1   MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
           MREILHIQGGQCGNQIG+KFWEV+CDEHG+DPTG Y GD   DLQLERINVYYNEASGGR
Sbjct: 1   MREILHIQGGQCGNQIGAKFWEVVCDEHGIDPTGTYHGD--SDLQLERINVYYNEASGGR 58

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
           YVPRAVLMDLEPGTMDS+RSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELID+VLD
Sbjct: 59  YVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLD 118

Query: 121 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDT 180
           VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMM+TFSVFPSPKVSDT
Sbjct: 119 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDT 178

Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
           VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKL+TPS
Sbjct: 179 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPS 221

Length = 447
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 223
COG5023 443 Tubulin [Cytoskeleton] 100.0
PLN00221 450 tubulin alpha chain; Provisional 100.0
KOG1374 448 consensus Gamma tubulin [Cytoskeleton] 100.0
PTZ00335 448 tubulin alpha chain; Provisional 100.0
PLN00220 447 tubulin beta chain; Provisional 100.0
PLN00222 454 tubulin gamma chain; Provisional 100.0
PTZ00010 445 tubulin beta chain; Provisional 100.0
cd02188 431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
cd02186 434 alpha_tubulin The tubulin superfamily includes fiv 100.0
PTZ00387 465 epsilon tubulin; Provisional 100.0
cd02187 425 beta_tubulin The tubulin superfamily includes five 100.0
cd02189 446 delta_tubulin The tubulin superfamily includes fiv 100.0
KOG1376 407 consensus Alpha tubulin [Cytoskeleton] 100.0
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 100.0
cd02190 379 epsilon_tubulin The tubulin superfamily includes f 100.0
cd06059 382 Tubulin The tubulin superfamily includes five dist 100.0
cd00286 328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
cd06060 493 misato Human Misato shows similarity with Tubulin/ 100.0
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 100.0
KOG2530 483 consensus Members of tubulin/FtsZ family [Cytoskel 100.0
KOG1375 369 consensus Beta tubulin [Cytoskeleton] 99.97
cd02202 349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.96
cd02191 303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.89
cd02201 304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.85
TIGR00065 349 ftsZ cell division protein FtsZ. This family consi 99.84
PF14881180 Tubulin_3: Tubulin domain 99.83
PRK13018 378 cell division protein FtsZ; Provisional 99.81
PRK09330 384 cell division protein FtsZ; Validated 99.77
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 99.61
COG0206 338 FtsZ Cell division GTPase [Cell division and chrom 99.29
PF13809345 Tubulin_2: Tubulin like 97.68
TIGR00824116 EIIA-man PTS system, mannose/fructose/sorbose fami 80.26
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=8.9e-83  Score=544.29  Aligned_cols=221  Identities=60%  Similarity=1.158  Sum_probs=216.5

Q ss_pred             CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCC
Q 036688            1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRS   80 (223)
Q Consensus         1 M~Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~   80 (223)
                      ||||||||+||||||||++||+++|+||||+++|.+++.  .+.+.++.++||+|++.++|+||||+|||||++|+.+++
T Consensus         1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~--~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~   78 (443)
T COG5023           1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDS--SDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRN   78 (443)
T ss_pred             CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCC--cccccccccceeeecCCCccccceEEEecCcchHhhhcc
Confidence            999999999999999999999999999999999998765  666778999999999999999999999999999999999


Q ss_pred             CCCcccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhh
Q 036688           81 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE  160 (223)
Q Consensus        81 ~~~~~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~  160 (223)
                      ++|+.+|+|+|+++||+|+|||||+|+|+.|+++.+.++|.|||++|.||.||||+++||++||||||+|+.|+|+|+++
T Consensus        79 g~y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~e  158 (443)
T COG5023          79 GPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREE  158 (443)
T ss_pred             CccccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCCCCC
Q 036688          161 YPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS  223 (223)
Q Consensus       161 y~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~~p~  223 (223)
                      ||||.+.+|+|+|.++.++++|||||++|++++|.|+||+++++||+||++||.+.|+|++|+
T Consensus       159 ypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~  221 (443)
T COG5023         159 YPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPS  221 (443)
T ss_pred             cchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999996

>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>KOG1374 consensus Gamma tubulin [Cytoskeleton] Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376 consensus Alpha tubulin [Cytoskeleton] Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton] Back     alignment and domain information
>KOG1375 consensus Beta tubulin [Cytoskeleton] Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>PF13809 Tubulin_2: Tubulin like Back     alignment and domain information
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
3ryc_B 445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 1e-106
3du7_B 445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 1e-106
4f61_B 445 Tubulin:stathmin-Like Domain Complex Length = 445 1e-106
4drx_B 431 Gtp-Tubulin In Complex With A Darpin Length = 431 1e-106
1z2b_B 445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 1e-106
4i4t_B 445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 1e-106
1ffx_B 445 Tubulin:stathmin-Like Domain Complex Length = 445 1e-106
2xrp_A 445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 1e-106
1tub_B 427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 1e-105
4ffb_B 463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 7e-88
1sa0_A 451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 6e-52
1ffx_A 451 Tubulin:stathmin-Like Domain Complex Length = 451 6e-52
1tub_A 440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 6e-52
2xrp_B 452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 7e-52
1jff_A 451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 7e-52
3du7_A 449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 8e-52
4i4t_A 450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 1e-51
3hkb_A 451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 1e-51
4drx_A 437 Gtp-Tubulin In Complex With A Darpin Length = 437 1e-51
3ryc_A 451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 1e-51
1z2b_A 448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 1e-51
4ffb_A 447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 3e-48
2btq_B 426 Structure Of Btubab Heterodimer From Prosthecobacte 2e-46
1z5v_A 474 Crystal Structure Of Human Gamma-Tubulin Bound To G 3e-45
3cb2_A 475 Crystal Structure Of Human Gamma-Tubulin Bound To G 3e-45
2bto_A 473 Structure Of Btuba From Prosthecobacter Dejongeii L 8e-38
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure 
Iteration: 1

 Score =  380 bits (976), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 176/223 (78%), Positives = 194/223 (86%), Gaps = 2/223 (0%)
Query: 1   MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
           MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+G +
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEATGNK 58
Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
           YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLD
Sbjct: 59  YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118
Query: 121 VVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMMTFSVFPSPKVSDT 180
           VVRKE+E+CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDT
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDT 178
Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
           VVEPYNATLSVHQLVEN DE   +DNEALYDICFRTLKL+TP+
Sbjct: 179 VVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPT 221
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query223
3ryc_A 451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 1e-149
2btq_B 426 Tubulin btubb; structural protein, cytoskeletal pr 1e-148
3ryc_B 445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 1e-148
3cb2_A 475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 1e-147
2bto_A 473 Tubulin btuba; bacterial tubulin, polymerization, 1e-144
3v3t_A 360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 1e-06
4ei7_A 389 Plasmid replication protein REPX; GTP hydrolase, p 2e-04
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
 Score =  423 bits (1088), Expect = e-149
 Identities = 102/223 (45%), Positives = 147/223 (65%)

Query: 1   MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
           MRE + I  GQ G QIG+  WE+ C EHG+ P G+   D       +  N +++E   G+
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
           +VPRAV +DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GHYT G E+ID VLD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 121 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDT 180
            +RK A+ C  LQGF V HS GGGTGSG  +LL+ ++  +Y  +  + FS++P+P+VS  
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
           VVEPYN+ L+ H  +E++D   ++DNEA+YDIC R L +  P+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT 223
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Length = 360 Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Length = 389 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query223
3ryc_B 445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3ryc_A 451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
2btq_B 426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
3cb2_A 475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2bto_A 473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
1w5f_A 353 Cell division protein FTSZ; complete proteome, GTP 99.97
1ofu_A 320 FTSZ, cell division protein FTSZ; bacterial cell d 99.96
2vaw_A 394 FTSZ, cell division protein FTSZ; bacterial cell d 99.96
1rq2_A 382 Cell division protein FTSZ; cell cycle, tubulin, G 99.96
2vap_A 364 FTSZ, cell division protein FTSZ homolog 1; polyme 99.96
2vxy_A 382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 99.96
3m89_A 427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 99.96
2r75_1 338 Cell division protein FTSZ; GTPase, tubulin-like, 99.96
3v3t_A 360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.91
4dxd_A 396 Cell division protein FTSZ; rossmann fold, GTPase, 99.89
4ei7_A 389 Plasmid replication protein REPX; GTP hydrolase, p 99.57
3r4v_A 315 Putative uncharacterized protein; tubulin, unknown 99.0
3bed_A142 PTS system, IIA component; mannose/sorbose, phosph 80.58
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
Probab=100.00  E-value=5.1e-75  Score=521.46  Aligned_cols=221  Identities=86%  Similarity=1.424  Sum_probs=215.3

Q ss_pred             CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCC
Q 036688            1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRS   80 (223)
Q Consensus         1 M~Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~   80 (223)
                      |||||+||+||||||||++||+++|+||+|+++|.+.++  ++.+++++++||+|+..++|+||||||||||++|++|+.
T Consensus         1 mrEii~i~vGQcGnQiG~~~We~~~~EHgi~~~g~~~~~--~~~~~~~~~~fF~e~~~~~~vpRavlvDlEp~vid~i~~   78 (445)
T 3ryc_B            1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGD--SDLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRS   78 (445)
T ss_dssp             CCEEEEEEEHHHHHHHHHHHHHHHHHHTTBCTTSBBCCS--CTHHHHTGGGTEEECSTTBEEECEEEEESSSHHHHHHHT
T ss_pred             CceEEEEecCCcHHHHHHHHHHHHHHHhCCCCCCCccCC--ccccccchhhccccCCCCccccceeEecCCchhhhhhhc
Confidence            999999999999999999999999999999999999877  566678999999999999999999999999999999999


Q ss_pred             CCCcccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhh
Q 036688           81 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE  160 (223)
Q Consensus        81 ~~~~~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~  160 (223)
                      ++++++|+|+++++|++|+|||||+|||+.|+++.++++|+|||++|+||.+|||+++||++||||||+++.++++|+++
T Consensus        79 g~~~~lf~p~~~i~g~~gAgNN~A~G~yt~G~e~~d~v~d~IRk~~E~cd~lqGf~i~hSlgGGTGSG~gs~lle~L~~e  158 (445)
T 3ryc_B           79 GPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREE  158 (445)
T ss_dssp             STTGGGSCGGGEEECSSCCTTCHHHHHHSHHHHHHHHHHHHHHHHHHTCSSEEEEEEEEESSSSHHHHHHHHHHHHHHHH
T ss_pred             ccccceecccceEEccccccCCccccchhhhHHHHHHHHHHHHHHHHcCCccceEEEEeecCCCCCCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCCCCC
Q 036688          161 YPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS  223 (223)
Q Consensus       161 y~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~~p~  223 (223)
                      ||++.+++++|+|++..++.+++|||++|++++|.+++|+++++||++|++||.++++|++|+
T Consensus       159 y~kk~~~~~sV~Psp~~s~~vvepYNa~Lsl~~L~e~sD~~~~iDNeaL~~ic~~~l~i~~p~  221 (445)
T 3ryc_B          159 YPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPT  221 (445)
T ss_dssp             CTTSEEEEEEEECCGGGCSCTTHHHHHHHHHHHHHHHCSEEEEEEHHHHHHHHHHTSCCSSCC
T ss_pred             cCccccceEEEEeCCccccccccchhhhhhHhhhhcccceeEeecchhHHHHHHhccCCCCCc
Confidence            999999999999998788999999999999999999999999999999999999999999885
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 223
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 1e-123
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 1e-115
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 1e-106
d1ofua1198 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Ps 2e-05
d2vapa1209 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Ar 4e-05
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  346 bits (888), Expect = e-123
 Identities = 190/223 (85%), Positives = 208/223 (93%), Gaps = 2/223 (0%)

Query: 1   MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGR 60
           MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+G +
Sbjct: 1   MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGD--SDLQLERINVYYNEAAGNK 58

Query: 61  YVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLD 120
           YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLD
Sbjct: 59  YVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 118

Query: 121 VVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDT 180
           VVRKE+E+CDCLQGFQ+ HSLGGGTGSGMGTLLISKIREEYPDR+M TFSV PSPKVSDT
Sbjct: 119 VVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDT 178

Query: 181 VVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS 223
           VVEPYNATLSVHQLVEN DE   +DNEALYDICFRTLKL+TP+
Sbjct: 179 VVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPT 221
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Length = 198 Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 209 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query223
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 99.59
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 99.59
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 99.55
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 99.5
d1pdoa_129 IIA domain of mannose transporter, IIA-Man {Escher 85.07
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=5.2e-77  Score=496.08  Aligned_cols=223  Identities=46%  Similarity=0.881  Sum_probs=213.9

Q ss_pred             CeeEEEEecCCchhHHHHHHHHHHHHhcCCCCCCcccCCCccccccccccceeecCCCCcccceeEEecCCCCcccCcCC
Q 036688            1 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRS   80 (223)
Q Consensus         1 M~Eii~iq~Gq~GnqiG~~~w~~~~~e~~i~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pR~l~vD~e~~~i~~i~~   80 (223)
                      |||||+||+||||||||.+||+++++||+|+++|....++..+...+++++||+|.+.++|+||||+||+||++|++++.
T Consensus         1 MrEII~iqvGQcGnQIG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRavlvD~E~~vI~~i~~   80 (245)
T d1tuba1           1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT   80 (245)
T ss_dssp             CCCCCEECCSHHHHHHHHHHHHHHTTTCCTTTCCCCSCCTTSSTTCCCSCCSSCSSSCTTTSCSCCEEESSHHHHHHHSG
T ss_pred             CCcEEEEeccCHHHHHHHHHHHHHHHHhCcCCCCCccCccccccccccchhhhhcccCCccccceeEecCCcceeeeecc
Confidence            99999999999999999999999999999999998776533344567889999999999999999999999999999999


Q ss_pred             CCCcccccCCceeeccCCCCCCCCccccchhhHHHHHHHHHHHhhhhhcCCCcceeEEEecCCCcCCchhHHHHHHHHhh
Q 036688           81 GPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREE  160 (223)
Q Consensus        81 ~~~~~l~~~~~~~~~~~~~~nn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~lqgf~i~~sl~GGtGsG~~s~lle~l~~~  160 (223)
                      ++++++|+|++++++++|+|||||+|||..|+++.++++|.|||++|+||++|||+++||++||||||+|++++|.|+|+
T Consensus        81 ~~~~~~f~~~~~i~~~~gsgNNwA~Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~i~hSl~GGTGSGlGs~l~e~l~d~  160 (245)
T d1tuba1          81 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVD  160 (245)
T ss_dssp             GGCSCCCCSSSEEECCSCCCCSSSTTTTSHHHHTTHHHHHHHHHHTTSSSCCCCEEEECCSSCGGGTHHHHHHTHHHHHH
T ss_pred             CcchhccCccccccCCCCcccchHhhhhccchhhHHHHHHHHHHHHHhCCCcCceeeeeecCCcCcCchhHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeEEEeccCCCCCCcccchhhhhHhhHHHHhhcCCEEEEeecHHHHHHHhhccCCCCCC
Q 036688          161 YPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPS  223 (223)
Q Consensus       161 y~~~~~~~~~v~P~~~~~~~~~~~~N~~lsl~~l~e~~d~~~~~~N~~l~~~~~~~~~i~~p~  223 (223)
                      ||++.+++++|+|++..++++++|||++|+|++|.+++|++++|||++|+++|.+++++++|+
T Consensus       161 yp~~~~~~~~V~P~~~~~~~vvqpYNtvLsl~~L~~~sD~v~~~dN~al~~i~~~~l~i~~~s  223 (245)
T d1tuba1         161 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPT  223 (245)
T ss_dssp             TTTSCEEEEECCCCSSCSTTTTHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHTSCCSSCC
T ss_pred             cccccccceEEeccccCCCcccccchhhhhhHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCC
Confidence            999999999999997778999999999999999999999999999999999999999999985
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1pdoa_ c.54.1.1 (A:) IIA domain of mannose transporter, IIA-Man {Escherichia coli [TaxId: 562]} Back     information, alignment and structure