Citrus Sinensis ID: 036705

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210--
Protein Sequence
MEMKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSPSFARALDIIMIISRSFFEFCLISIKWRQLQG
Secondary Structure (PSIPRED)
cccccccccccccEEEcccccccccHHcccccccccHHHHHHHHHHcccEEEEEEcccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcEEEEEEHcHHHHEEEEEEHHHHcc
Coil and Loop (DISEMBL)
memkkpcagrqkiaiskipkknhlqVTFSKRRTGVFKKASELStlcgidiaiivfspankafsfghpnvdSIIDRYlarnsnppsesgtnRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVMSEIRKASRsqcwweapinelglHELEQLKTAMEELKKNVEQQANKILidsknnpspsfaRALDIIMIISRSFFEFCLISIKWRQLQG
Flexible Loop (DISEMBL)
memkkpcagrqkiaiskipkknhlqvtfskrrtgvfkKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLARNsnppsesgtnRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKilidsknnpspSFARALDIIMIISRSFFEFCLISIKWRQLQG
Low Complexity Region (SEG)
MEMKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSPSFARALDIIMIISRSFFEFCLISIKWRQLQG
Disordered region (IsUnstruct)
*********************NHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLA*********************NIRELNMQLTQVLHQLEV**************SRSQCWWEAPINELGLHELEQL*****************************FARALDIIMIISRSFFEFCLISIKWR****
Disordered Region (DISOPRED)
************IAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLA************************ELNMQLT**************************CWWEAPINELGLHELEQLKTAMEELK*NVEQ*****************************SFFEFCLISIKWRQL**
Disordered Region (DISEMBL)
**********QKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSPSFARALDIIMIISRSFFEFCLISIKWRQLQG
Disordered Region (DISPRO)
*************AISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSPSFARALDIIMIISRSFFEFCLISIKWRQL**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEMKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLARNSNPPSESGTNRLIEAHRxxxxxxxxxxxxxxxxxxxxxKKHGEVMSEIRKASRSQCWWEAPIxxxxxxxxxxxxxxxxxxxxxxxxxxxxILIDSKNNPSPSFARALDIIMIISRSFFEFCLISIKWRQLQG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	212	2.2.26 [Sep-21-2011]
Q9FKK2	299	Agamous-like MADS-box pro	yes	no	0.801	0.568	0.508	4e-43
Q4PSU4	264	Agamous-like MADS-box pro	no	no	0.716	0.575	0.540	1e-40
O82794	220	MADS-box protein AGL24 OS	no	no	0.561	0.540	0.38	4e-14
Q01540	252	Floral homeotic protein A	N/A	no	0.830	0.698	0.316	6e-14
Q40704	236	MADS-box transcription fa	no	no	0.688	0.618	0.323	7e-14
Q6VAM4	159	MADS-box transcription fa	no	no	0.683	0.911	0.293	7e-14
Q9FUY6	265	MADS-box protein JOINTLES	N/A	no	0.683	0.547	0.309	8e-14
Q6Z6W2	241	MADS-box transcription fa	no	no	0.674	0.593	0.304	9e-14
Q5K4R0	246	MADS-box transcription fa	no	no	0.518	0.447	0.380	1e-13
A2ICN5	507	Myocyte-specific enhancer	no	no	0.533	0.222	0.380	1e-13

>sp|Q9FKK2|AGL62_ARATH Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1

 Score =  174 bits (441), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 87/171 (50%), Positives = 119/171 (69%), Gaps = 1/171 (0%)

Query: 3   MKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAF 62
           M K   GRQKI + K+  +++LQVTFSKRR+G+FKKASEL TLCG ++AI+VFSP  K F
Sbjct: 1   MVKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVF 60

Query: 63  SFGHPNVDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHG 122
           SFGHPNVDS+IDR++  N  PP +    +L E  RN+ +++LN  LTQVL QLE EKK  
Sbjct: 61  SFGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKY 120

Query: 123 EVMSEIRKASRS-QCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKIL 172
           + + +IR+ +++   WWE P+ EL L +LE  K  +E LKK V  +A++  
Sbjct: 121 DELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASRFF 171

Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q4PSU4|AGL61_ARATH Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1

 Score =  166 bits (419), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 86/159 (54%), Positives = 118/159 (74%), Gaps = 7/159 (4%)

Query: 9   GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
           GRQKI + KI K++H QVTFSKRR G+FKKASEL TLCG +I IIVFSPA K FSFGHP+
Sbjct: 63  GRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPS 122

Query: 69  VDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVMSEI 128
           V+S++DRY++RN+   ++S   + ++    A+  ELNMQLT +L ++E EKK G+ M E+
Sbjct: 123 VESVLDRYVSRNNMSLAQS---QQLQGSPAASC-ELNMQLTHILSEVEEEKKKGQAMEEM 178

Query: 129 RKAS--RSQC-WWEAPINELGLHELEQLKTAMEELKKNV 164
           RK S  RS   WWE P+ E+ + +L+++K A+EEL+K V
Sbjct: 179 RKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

Probable transcription factor. Controls central cell differentiation during female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|O82794|AGL24_ARATH MADS-box protein AGL24 OS=Arabidopsis thaliana GN=AGL24 PE=1 SV=1

 Score = 78.2 bits (191), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 57/150 (38%), Positives = 72/150 (48%), Gaps = 31/150 (20%)

Query: 9   GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
            R+KI I KI      QVTFSKRR G+FKKA ELS LC  D+A+I+FS   K F F    
Sbjct: 2   AREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSSR 61

Query: 69  VDSIIDRYLARNSN------PPS-----------------ESGTNRLIEAHRNANIRELN 105
           +  I+ RY    SN      PPS                 E  T +L    R  ++  LN
Sbjct: 62  MRDILGRYSLHASNINKLMDPPSTHLRLENCNLSRLSKEVEDKTKQL-RKLRGEDLDGLN 120

Query: 106 MQLTQVLHQL------EVEKKHGE-VMSEI 128
           ++  Q L +L       V +K GE VMS+I
Sbjct: 121 LEELQRLEKLLESGLSRVSEKKGECVMSQI 150

Transcription activator that mediates floral transition in response to vernalization. Promotes inflorescence fate in apical meristems. Acts in a dosage-dependent manner. Probably involved in the transduction of RLK-mediated signaling (e.g. IMK3 pathway). Together with AP1 and SVP, controls the identity of the floral meristem and regulates expression of class B, C and E genes. When associated with SOC1, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development. Confers inflorescence characteristics to floral primordia and early flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q01540|AG_BRANA Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 90/183 (49%), Gaps = 7/183 (3%)

Query: 8   AGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHP 67
           AGR KI I +I    + QVTF KRR G+ KKA ELS LC  ++A+IVFS   + + + + 
Sbjct: 17  AGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNN 76

Query: 68  NVDSIIDRY---LARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEV 124
           +V   I+RY   ++ NSN  S +  N       +A +R+  + +     QL  E      
Sbjct: 77  SVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMS 136

Query: 125 MSEIR----KASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPS 180
             E+R    +  RS     +  NEL   E++ ++    +L  + +    KI  + +NNPS
Sbjct: 137 PKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHNDNQLLRAKIAENERNNPS 196

Query: 181 PSF 183
            S 
Sbjct: 197 MSL 199

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Brassica napus (taxid: 3708)

>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 87/164 (53%), Gaps = 18/164 (10%)

Query: 9   GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
           GR KI I +I    + QVTF KRR G+ KKA ELS LC  ++A+IVFS   + + + + +
Sbjct: 2   GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 61

Query: 69  VDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVMSEI 128
           V S ++RY   NS+  S SGT           + E+N Q     H  +   K  + +S +
Sbjct: 62  VKSTVERYKKANSD-TSNSGT-----------VAEVNAQ-----HYQQESSKLRQQISSL 104

Query: 129 RKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKIL 172
           + A+ S+      IN + L +L+Q++  +E+    +  + N++L
Sbjct: 105 QNAN-SRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELL 147

Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6VAM4|MAD23_ORYSJ MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1

 Score = 77.4 bits (189), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 89/167 (53%), Gaps = 22/167 (13%)

Query: 9   GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
           GR KI I +I      QVTFSKRR+G+FKKA ELS LC  ++ ++VFS  ++ + F   +
Sbjct: 2   GRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSS 61

Query: 69  VDSIIDRYLARNSNPPSESGTNRLIEAHRNANI-RELNMQLTQVLHQLEVEKKHGEVMSE 127
           + SII+RY     +P      ++ + A   A + ++    L Q LH L  ++ H +++ +
Sbjct: 62  MKSIIERYNETKEDP------HQTMNASSEAKLWQQEAASLRQQLHNL--QEYHRQLLGQ 113

Query: 128 IRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILID 174
                         ++ L + +L+ L++ +E   KN+  + + +++D
Sbjct: 114 -------------QLSGLDVEDLQNLESKLEMSLKNIRLRKDNVMMD 147

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FUY6|JOIN_SOLLC MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1

 Score = 77.0 bits (188), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 85/165 (51%), Gaps = 20/165 (12%)

Query: 9   GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
            R+KI I KI      QVTFSKRR G+FKKA ELS LC  D+A+I+FS   K F +   +
Sbjct: 2   AREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSS 61

Query: 69  VDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVMSEI 128
           +  I++R    + N       +  ++   N+N   L+ ++++  H+L   +  GE     
Sbjct: 62  MKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRL--RQMRGE----- 114

Query: 129 RKASRSQCWWEAPINELGLHELEQLKTAMEE-LKKNVEQQANKIL 172
                        +  L + EL+QL+ ++E  L + +E++ +KI+
Sbjct: 115 ------------ELQGLNIEELQQLERSLETGLSRVIERKGDKIM 147

Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.

Solanum lycopersicum (taxid: 4081)

>sp|Q6Z6W2|MAD57_ORYSJ MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2

 Score = 77.0 bits (188), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 21/164 (12%)

Query: 9   GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
           GR KI I +I      QVTFSKRR G+ KKA ELS LC  ++ ++VFS   + + F   N
Sbjct: 2   GRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTN 61

Query: 69  VDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVMSEI 128
           + ++IDRY          + T+ +    R A        L Q LH L  ++ H ++M E 
Sbjct: 62  MKTVIDRYTNAKEELLGGNATSEIKIWQREA------ASLRQQLHNL--QESHKQLMGE- 112

Query: 129 RKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKIL 172
                        ++ LG+ +L+ L+  +E   +N+  + + +L
Sbjct: 113 ------------ELSGLGVRDLQGLENRLEISLRNIRMRKDNLL 144

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5K4R0|MAD47_ORYSJ MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 11/121 (9%)

Query: 10  RQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNV 69
           R++IAI +I      QVTFSKRR G+FKKA ELS LC  ++ ++VFS   K F F   ++
Sbjct: 22  RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSM 81

Query: 70  DSIIDRYLARNSN----PPSE---SGTNRLIEAHRNANIRELNMQLTQV----LHQLEVE 118
           + IIDRY + +       PS+    G +    A     + E +++L Q+    LH+L VE
Sbjct: 82  EQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVE 141

Query: 119 K 119
           +
Sbjct: 142 Q 142

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2ICN5|MEF2A_PIG Myocyte-specific enhancer factor 2A OS=Sus scrofa GN=MEF2A PE=2 SV=2

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 8/121 (6%)

Query: 9   GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
           GR+KI I++I  + + QVTF+KR+ G+ KKA ELS LC  +IA+I+F+ +NK F +   +
Sbjct: 2   GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 61

Query: 69  VDSIIDRYLARNSNPPSESGTNR-LIEA-----HRNANIRELNMQLTQVLHQLEVEKKHG 122
           +D ++ +Y   N   P ESGTN  ++EA     HR  +  + +       H  E  KK  
Sbjct: 62  MDKVLLKYTEYNE--PHESGTNSDIVEALNKKEHRGCDSPDPDTSYVLTPHTEEKYKKIN 119

Query: 123 E 123
           E
Sbjct: 120 E 120

Transcriptional activator which binds specifically to the MEF2 element, 5'-YTA[AT](4)TAR-3', found in numerous muscle-specific genes. Also involved in the activation of numerous growth factor- and stress-induced genes. Mediates cellular functions not only in skeletal and cardiac muscle development, but also in neuronal differentiation and survival. Plays diverse roles in the control of cell growth, survival and apoptosis via p38 MAPK signaling in muscle-specific and/or growth factor-related transcription. In cerebellar granule neurons, phosphorylated and sumoylated MEF2A represses transcription of NUR77 promoting synaptic differentiation.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
224103801	217	predicted protein [Populus trichocarpa]	0.834	0.815	0.724	6e-66
225429161	214	PREDICTED: agamous-like MADS-box protein	0.839	0.831	0.674	2e-64
255562152	226	mads box protein, putative [Ricinus comm	0.783	0.734	0.706	8e-63
357462355	207	Agamous-like MADS-box protein AGL62 [Med	0.825	0.845	0.644	4e-61
356574345	226	PREDICTED: agamous-like MADS-box protein	0.834	0.783	0.65	5e-61
356534256	226	PREDICTED: agamous-like MADS-box protein	0.839	0.787	0.640	5e-61
449465111	228	PREDICTED: agamous-like MADS-box protein	0.806	0.75	0.635	2e-60
224103797	216	predicted protein [Populus trichocarpa]	0.816	0.800	0.631	1e-59
255562154	217	mads box protein, putative [Ricinus comm	0.806	0.788	0.618	2e-57
255579749	183	mads box protein, putative [Ricinus comm	0.820	0.950	0.615	2e-57

>gi|224103801|ref|XP_002313198.1| predicted protein [Populus trichocarpa] gi|222849606|gb|EEE87153.1| predicted protein [Populus trichocarpa]

 Score =  255 bits (652), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 129/178 (72%), Positives = 155/178 (87%), Gaps = 1/178 (0%)

Query: 1   MEMKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANK 60
           M  KKP  GRQKI I KIPKKNHLQVTFSKRR G+FKKASEL TLCG+DIAI+VFSPA+K
Sbjct: 1   MVNKKPSMGRQKIKIEKIPKKNHLQVTFSKRRAGLFKKASELCTLCGVDIAILVFSPAHK 60

Query: 61  AFSFGHPNVDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKK 120
           AFSFGHP+VDSI+DR+L RN+ PP  SGT++LIEAHRNAN+RE NMQLTQ+L+QLE EK+
Sbjct: 61  AFSFGHPDVDSIMDRFLTRNA-PPQSSGTHQLIEAHRNANVREHNMQLTQILNQLEAEKR 119

Query: 121 HGEVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNN 178
           H E ++++RK+SRSQCWWEAP+ ELGL ELEQL+ A+EELKK + +Q NKILI+S N+
Sbjct: 120 HSETLNQMRKSSRSQCWWEAPVEELGLQELEQLRDALEELKKRLTKQTNKILIESSNS 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429161|ref|XP_002270964.1| PREDICTED: agamous-like MADS-box protein AGL62 [Vitis vinifera] gi|147772544|emb|CAN63001.1| hypothetical protein VITISV_024203 [Vitis vinifera]

 Score =  251 bits (640), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 122/181 (67%), Positives = 150/181 (82%), Gaps = 3/181 (1%)

Query: 3   MKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAF 62
           +KKP  GRQKI ISKIPKKNHLQVTFSKRR+G+FKKASEL TLCG ++AIIVFSPA K F
Sbjct: 2   VKKPSKGRQKIEISKIPKKNHLQVTFSKRRSGLFKKASELCTLCGANVAIIVFSPAGKVF 61

Query: 63  SFGHPNVDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHG 122
           SFGHP+V+SI+DR+     NP  E     LIEAHRNA++RELN+QLTQVL+QLE EKK G
Sbjct: 62  SFGHPDVESIVDRFFT--CNPIPEPNGLHLIEAHRNASVRELNLQLTQVLNQLEAEKKRG 119

Query: 123 EVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSPS 182
           E++S++R+AS++QCWWEAPINEL + ELEQLK +MEELKK V  Q +K+L+++  NPSP 
Sbjct: 120 EILSQMRRASQTQCWWEAPINELSMPELEQLKVSMEELKKVVLSQGDKLLMEAA-NPSPF 178

Query: 183 F 183
           +
Sbjct: 179 Y 179

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562152|ref|XP_002522084.1| mads box protein, putative [Ricinus communis] gi|223538683|gb|EEF40284.1| mads box protein, putative [Ricinus communis]

 Score =  245 bits (626), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 118/167 (70%), Positives = 145/167 (86%), Gaps = 1/167 (0%)

Query: 9   GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
           GRQKIAI KI KK HLQVTFSKRR G+FKKASEL TLCG++IAI+VFSPANKAFSFGHP 
Sbjct: 27  GRQKIAIEKISKKTHLQVTFSKRRAGLFKKASELCTLCGVEIAILVFSPANKAFSFGHPE 86

Query: 69  VDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVMSEI 128
           V+S++DR+LAR+  P S S  ++LIEAHRNAN+ ELNMQLT  L+Q+E EKK GE++ +I
Sbjct: 87  VESVLDRFLARHPLPTSSSA-HQLIEAHRNANVCELNMQLTHTLNQMEDEKKKGELLDQI 145

Query: 129 RKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDS 175
           RK+S++ CWWEAPI+ELG+HELEQL+ A+EELKKNV +Q +KILI+S
Sbjct: 146 RKSSQNMCWWEAPIDELGMHELEQLRFALEELKKNVTKQISKILINS 192

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462355|ref|XP_003601459.1| Agamous-like MADS-box protein AGL62 [Medicago truncatula] gi|355490507|gb|AES71710.1| Agamous-like MADS-box protein AGL62 [Medicago truncatula]

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 114/177 (64%), Positives = 148/177 (83%), Gaps = 2/177 (1%)

Query: 1   MEMKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANK 60
           M  KK   GRQKI I KIPKK+HLQVTFSKRR+G+FKKASEL TLCG++IAI+VFSPANK
Sbjct: 1   MLKKKFSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPANK 60

Query: 61  AFSFGHPNVDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKK 120
           AFSFGHP V+SIIDRYL+R  NPP ES +++L+EAHRNAN+R+LN+QLTQ+L  LE+EKK
Sbjct: 61  AFSFGHPEVESIIDRYLSR--NPPQESSSHQLVEAHRNANVRDLNVQLTQLLSHLEIEKK 118

Query: 121 HGEVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKN 177
            GE +  +RKA + Q WWE+P++ELGL+EL QLK ++E+L+KN+ + A+K +++  N
Sbjct: 119 QGEEIDHVRKARQMQFWWESPVDELGLNELLQLKVSIEDLRKNLGKIASKCMMEQSN 175

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574345|ref|XP_003555309.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Glycine max]

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 117/180 (65%), Positives = 146/180 (81%), Gaps = 3/180 (1%)

Query: 4   KKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFS 63
           KK   GRQKI I KIPKK+HLQVTFSKRR+G+FKKASEL TLCG++IAI+VFSPA+KAFS
Sbjct: 5   KKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFS 64

Query: 64  FGHPNVDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGE 123
           FGHP V+S+IDRY  R  NPP ES  + L+EAHRNAN+ +LNMQLTQV + LE+EKK  +
Sbjct: 65  FGHPEVESLIDRYTTR--NPPQESSAHHLVEAHRNANVCDLNMQLTQVFNHLEIEKKRAD 122

Query: 124 VMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILID-SKNNPSPS 182
            +  +RKA + Q WWE+PI+ELGL+EL QLK ++EELKKN+E+ A+K +I+ S N PS S
Sbjct: 123 DLDHVRKARQRQFWWESPIDELGLNELLQLKASIEELKKNIEKHASKFMIEHSSNIPSSS 182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534256|ref|XP_003535673.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Glycine max]

 Score =  239 bits (610), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 116/181 (64%), Positives = 146/181 (80%), Gaps = 3/181 (1%)

Query: 4   KKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFS 63
           KK   GRQKI I KIPKK+HLQVTFSKRR+G+FKKASEL TLCG++IA++VFSPA+KAFS
Sbjct: 5   KKSSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELRTLCGVEIAVVVFSPADKAFS 64

Query: 64  FGHPNVDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGE 123
           FGHP V+S+IDRY  R  NPP ES  + L+EAHRNAN+R+LNMQL+QV + LE+EKK G+
Sbjct: 65  FGHPEVESLIDRYTTR--NPPQESSAHHLVEAHRNANVRDLNMQLSQVFNHLEIEKKRGD 122

Query: 124 VMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILID-SKNNPSPS 182
            +   RKA + Q WWE+PI+ELGL+EL QLK ++EELK N+E+ A+K +I+ S N PS S
Sbjct: 123 DLDHARKARQRQFWWESPIDELGLNELLQLKASIEELKLNIEKHASKFMIEHSSNIPSSS 182

Query: 183 F 183
            
Sbjct: 183 L 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465111|ref|XP_004150272.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Cucumis sativus] gi|449484412|ref|XP_004156875.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Cucumis sativus]

 Score =  237 bits (605), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 110/173 (63%), Positives = 147/173 (84%), Gaps = 2/173 (1%)

Query: 9   GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
           GRQK+ + K+P +++LQVTFSKRR+G+FKKASEL TLCG +IAIIVFSP  K FSFGHP 
Sbjct: 6   GRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPC 65

Query: 69  VDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVMSEI 128
           V+++I+R++ RN  PP  SGT +LIEAHRNAN+RELN QLTQVL+QLE+E+K GE ++++
Sbjct: 66  VEALIERFVTRN--PPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRGEELNKL 123

Query: 129 RKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSP 181
           RKAS++QCWWE PI E+ +H+LEQLK +++ELKKNV QQA++ILI + +N +P
Sbjct: 124 RKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSSNANP 176

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103797|ref|XP_002313197.1| predicted protein [Populus trichocarpa] gi|222849605|gb|EEE87152.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (598), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 113/179 (63%), Positives = 144/179 (80%), Gaps = 6/179 (3%)

Query: 3   MKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAF 62
           M +   GRQK+ + K+ K+++LQVTFSKRR+G+FKKASELSTLCG +IAIIVFSP N+ F
Sbjct: 1   MARKSRGRQKVEMVKMSKESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGNRVF 60

Query: 63  SFGHPNVDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHG 122
           SFGHP V+++IDRY  RN  PP  SGT +LIEAHRNA +RELNMQLTQV++Q E+EKK G
Sbjct: 61  SFGHPGVETVIDRYFTRN--PPQNSGTMQLIEAHRNATVRELNMQLTQVVNQFEIEKKRG 118

Query: 123 EVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSP 181
           E +S++RKA +SQCWWEAP+ EL L ++EQLK ++E LK NV +QA K+LI+   NP P
Sbjct: 119 EELSQMRKA-QSQCWWEAPVEELTLPQIEQLKVSLEGLKMNVTKQAQKLLIE---NPGP 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562154|ref|XP_002522085.1| mads box protein, putative [Ricinus communis] gi|223538684|gb|EEF40285.1| mads box protein, putative [Ricinus communis]

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/173 (61%), Positives = 142/173 (82%), Gaps = 2/173 (1%)

Query: 3   MKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAF 62
           M K   GRQKI + K+P +++LQVTFSKRR+G+FKKASELSTLCG +IAIIVFSP  K F
Sbjct: 1   MAKRSKGRQKIDMVKMPNESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKVF 60

Query: 63  SFGHPNVDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHG 122
           SFGHP V+ +IDR+L+RN  PP  S T +LIEAHRNA++RELN QLTQVL QLE+E+K G
Sbjct: 61  SFGHPGVEVVIDRFLSRN--PPQNSPTMQLIEAHRNASVRELNAQLTQVLTQLEMERKRG 118

Query: 123 EVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDS 175
           E ++++RK  +++CWWEAPI++L + +LEQL+ ++E+LKKNV  QA+K+LI +
Sbjct: 119 EELNQMRKTGQNRCWWEAPIDDLTMPQLEQLRMSLEQLKKNVAMQADKLLIQN 171

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579749|ref|XP_002530713.1| mads box protein, putative [Ricinus communis] gi|223529727|gb|EEF31667.1| mads box protein, putative [Ricinus communis]

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/177 (61%), Positives = 141/177 (79%), Gaps = 3/177 (1%)

Query: 3   MKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAF 62
           MK+   GRQKIAI KI KK+HLQVTFSKRR G+FKKASEL TLCG++IAIIVFSPA KAF
Sbjct: 1   MKRCSLGRQKIAIEKISKKSHLQVTFSKRRAGLFKKASELCTLCGVEIAIIVFSPAGKAF 60

Query: 63  SFGHPNVDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHG 122
           SFGHP V S++ R+LARN   P  S + + I+A RNAN+RELN++L   L+QLE EKK G
Sbjct: 61  SFGHPEVGSVLKRFLARN---PLGSISCQFIQADRNANVRELNVKLIHALNQLEAEKKRG 117

Query: 123 EVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNP 179
           E ++ +RK+S+S CWWEAP++ELGL ELEQL+ A+E+LKKNV ++ +++L  + + P
Sbjct: 118 EALNRMRKSSQSMCWWEAPVDELGLQELEQLRYALEDLKKNVAKEIDRVLGTTTSLP 174

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	212
TAIR|locus:2175188	299	AGL62 "AGAMOUS-like 62" [Arabi	0.792	0.561	0.514	2.2e-41
TAIR|locus:2047304	264	AGL61 "AGAMOUS-like 61" [Arabi	0.754	0.606	0.532	9.6e-41
TAIR|locus:2115420	248	AT4G36590 [Arabidopsis thalian	0.787	0.673	0.416	2.7e-29
TAIR|locus:2025386	247	AGL28 "AGAMOUS-like 28" [Arabi	0.773	0.663	0.415	6.4e-28
TAIR|locus:2206320	226	AGL23 "AGAMOUS-like 23" [Arabi	0.806	0.756	0.394	1.7e-27
TAIR|locus:2103415	178	AGL91 "AGAMOUS-like 91" [Arabi	0.773	0.921	0.368	1.2e-24
TAIR|locus:2040819	172	AGL29 "AGAMOUS-like 29" [Arabi	0.768	0.947	0.371	3.3e-24
TAIR|locus:2032537	182	AGL59 "AGAMOUS-like 59" [Arabi	0.806	0.939	0.342	1e-22
TAIR|locus:2102990	207	AGL57 "AGAMOUS-like 57" [Arabi	0.735	0.753	0.310	1.9e-21
TAIR|locus:2195798	217	AT1G17310 [Arabidopsis thalian	0.424	0.414	0.505	2.5e-21

TAIR|locus:2175188 AGL62 "AGAMOUS-like 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 87/169 (51%), Positives = 119/169 (70%)

Query:     3 MKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAF 62
             M K   GRQKI + K+  +++LQVTFSKRR+G+FKKASEL TLCG ++AI+VFSP  K F
Sbjct:     1 MVKKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVF 60

Query:    63 SFGHPNVDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHG 122
             SFGHPNVDS+IDR++  N  PP +    +L E  RN+ +++LN  LTQVL QLE EKK  
Sbjct:    61 SFGHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKY 120

Query:   123 EVMSEIRKASRSQC-WWEAPINELGLHELEQLKTAMEELKKNVEQQANK 170
             + + +IR+ +++   WWE P+ EL L +LE  K  +E LKK V  +A++
Sbjct:   121 DELKKIREKTKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEASR 169

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009960 "endosperm development" evidence=IMP

TAIR|locus:2047304 AGL61 "AGAMOUS-like 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 89/167 (53%), Positives = 121/167 (72%)

Query:     1 MEMKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANK 60
             M  KK   GRQKI + KI K++H QVTFSKRR G+FKKASEL TLCG +I IIVFSPA K
Sbjct:    55 MSKKKESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKK 114

Query:    61 AFSFGHPNVDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKK 120
              FSFGHP+V+S++DRY++RN+   ++S   + ++    A+  ELNMQLT +L ++E EKK
Sbjct:   115 PFSFGHPSVESVLDRYVSRNNMSLAQS---QQLQGSPAASC-ELNMQLTHILSEVEEEKK 170

Query:   121 HGEVMSEIRKAS--RSQC-WWEAPINELGLHELEQLKTAMEELKKNV 164
              G+ M E+RK S  RS   WWE P+ E+ + +L+++K A+EEL+K V
Sbjct:   171 KGQAMEEMRKESVRRSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009559 "embryo sac central cell differentiation" evidence=IMP

GO:0043078 "polar nucleus" evidence=IDA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2115420 AT4G36590 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 72/173 (41%), Positives = 110/173 (63%)

Query:     3 MKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAF 62
             M +   GRQKI + K+  +++LQVTFSKRR G+FKKASEL TL G +I +IVFSP  K F
Sbjct:     1 MVRSTKGRQKIEMKKMENESNLQVTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVF 60

Query:    63 SFGHPNVDSIIDRYLARNSNPP---SESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEK 119
             SFGHP+V  +I R+   N N      ++   +L+E   + NI+ LN  LT+VL   E EK
Sbjct:    61 SFGHPSVQELIHRFSNPNHNSAIVHHQNNNLQLVETRPDRNIQYLNNILTEVLANQEKEK 120

Query:   120 KHGEVMSEIRKASRSQC--WWEAPINELGLHELEQLKTAMEELKKNVEQQANK 170
             +   V+ ++ K SR Q   W+E  + +L ++E  QL +A++++KK + ++ ++
Sbjct:   121 QKRMVL-DLLKESREQVGNWYEKDVKDLDMNETNQLISALQDVKKKLVREMSQ 172

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2025386 AGL28 "AGAMOUS-like 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 71/171 (41%), Positives = 105/171 (61%)

Query:     3 MKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAF 62
             M +   GR+KI + K+  +++LQVTFSKRR+G+FKK SEL TLC  +IAIIVFSP+ KA+
Sbjct:     1 MARKNLGRRKIELVKMTNESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAY 60

Query:    63 SFGHPNVDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEK--K 120
             SFGHPNV+ ++D  L R       + TN   E+     I+ LN  LT+V+ + E E+  K
Sbjct:    61 SFGHPNVNKLLDHSLGRVIR---HNNTN-FAESRTKLRIQMLNESLTEVMAEKEKEQETK 116

Query:   121 HGEVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKI 171
                V +E R+   ++ WW     EL L +   +K  +E LKK V+++  ++
Sbjct:   117 QSIVQNE-RENKDAEKWWRNSPTELNLAQSTSMKCDLEALKKEVDEKVAQL 166

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2206320 AGL23 "AGAMOUS-like 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 71/180 (39%), Positives = 116/180 (64%)

Query:     3 MKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAF 62
             M K   GR+K+ I K+ K+++LQVTFSKR+ G+FKKASE  TLC   IA+IVFSPA K F
Sbjct:     1 MVKKTLGRRKVEIVKMTKESNLQVTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVF 60

Query:    63 SFGHPNVDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHG 122
             SFGHPNVD ++D +  R       + TN L E++   +++ LN   T+V  ++E E+K+ 
Sbjct:    61 SFGHPNVDVLLDHF--RGC-VVGHNNTN-LDESYTKLHVQMLNKSYTEVKAEVEKEQKNK 116

Query:   123 EVMSEI-RKASRSQCWW-EAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPS 180
             +  ++  R+   ++ WW ++P+ EL L +   +   +++LKK V+++A +++   + NP+
Sbjct:   117 QSRAQNERENENAEEWWSKSPL-ELNLSQSTCMIRVLKDLKKIVDEKAIQLI--HQTNPN 173

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009553 "embryo sac development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2103415 AGL91 "AGAMOUS-like 91" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 63/171 (36%), Positives = 98/171 (57%)

Query:     9 GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
             GR+KI + K+   N  QVTFSKRR G+FKKASEL+TLC  ++ I+VFSP NK +SFG PN
Sbjct:     2 GRRKIKMEKVQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSFGKPN 61

Query:    69 VDSIIDRYLARNSNPPSESG----TNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEV 124
              D I +R+  +N     E G    T+     +R    +++  +L  +  + E EKKHGE 
Sbjct:    62 FDVIAERF--KNEFEEEEEGDSCETSGYSRGNRARQEKKICKRLNSITEEAEAEKKHGED 119

Query:   125 MSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDS 175
             + +  + S  Q  +  PI EL L EL++ +  ++++   ++   + +   S
Sbjct:   120 LHKWLE-SAEQDKFNKPIEELTLEELKEFEAKIKKISCGIQSNISHMQASS 169

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2040819 AGL29 "AGAMOUS-like 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 62/167 (37%), Positives = 99/167 (59%)

Query:     9 GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
             GR+KI +  +   N  QVTFSKRRTG+FKKASEL+TLC  ++ I+VFSP  K FS+G PN
Sbjct:     2 GRRKIKMEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPN 61

Query:    69 VDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVMSEI 128
             +DS+ +R++    +  S+SG       +R   ++ L+ +L  +  ++E EK+ GE   E 
Sbjct:    62 LDSVAERFMREYDD--SDSGDEEKSGNYR-PKLKRLSERLDLLNQEVEAEKERGEKSQEK 118

Query:   129 RKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDS 175
              +++  + + E+ I  L L EL + K  ++ +   +E Q N +   S
Sbjct:   119 LESAGDERFKES-IETLTLDELNEYKDRLQTVHGRIEGQVNHLQASS 164

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2032537 AGL59 "AGAMOUS-like 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 62/181 (34%), Positives = 105/181 (58%)

Query:     5 KPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSF 64
             K   G+QKI I KI K     VTFSKR  G++ K SELS LCG+++A I +S + K ++F
Sbjct:     4 KKTKGKQKINIKKIEKDEGRSVTFSKRLNGIYTKISELSILCGVEVAFIGYSCSGKPYTF 63

Query:    65 GHPNVDSIIDRYLARNSNPPSESGTNRLIEAHRNANIRELNMQLTQVLHQLEVEK---KH 121
             G P+  ++ +R+L  N +  S S ++ ++ AH+ A I+EL  +  +++ +L+V++   K 
Sbjct:    64 GSPSFQAVAERFL--NGDASSSSSSSLVMNAHKQAKIQELCKKYNRLVEELKVDEVKVKK 121

Query:   122 GEVMSEIRKASRSQCWWEAPINELGLHE-LEQLKTAMEEL-KKNVEQQANKILI--DSKN 177
                ++E R  ++   WW+   N++  HE  +++    +EL  K  EQ A++I    D  N
Sbjct:   122 AAALAETRVVNKD-VWWKVDPNDVKDHEKAKKMMEKYQELYDKLCEQAASRIKRGHDENN 180

Query:   178 N 178
             N
Sbjct:   181 N 181

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2102990 AGL57 "AGAMOUS-like 57" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 49/158 (31%), Positives = 88/158 (55%)

Query:     9 GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
             G+QKI + K+       +TFSKR+TG+FKK +EL  +C +++A ++FS   K ++F HP+
Sbjct:    14 GKQKIEMKKVENYGDRMITFSKRKTGIFKKMNELVAMCDVEVAFLIFSQPKKPYTFAHPS 73

Query:    69 VDSIIDRYLARNSNPPSESGTNR-LIEAHRNANIRELNMQLTQVLHQLEVEKKHGEVMSE 127
             +  + DR    +   P E    R L+EA++   + +L  ++  +  +L ++ +  +++ E
Sbjct:    74 MKKVADRLKNPSRQEPLERDDTRPLVEAYKKRRLHDLVKKMEALEEELAMDLEKLKLLKE 133

Query:   128 IRKASR-SQCWWEAPINELGLHELEQLKTAMEELKKNV 164
              R   +  + WW  P   L   EL+Q   AM EL+ N+
Sbjct:   134 SRNEKKLDKMWWNFPSEGLSAKELQQRYQAMLELRDNL 171

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2195798 AT1G17310 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 2.5e-21, Sum P(2) = 2.5e-21
 Identities = 48/95 (50%), Positives = 60/95 (63%)

Query:     5 KPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSF 64
             K   GRQKI I KI ++   QVTFSKRR G+FKK++ELS L G  IA+I FS  ++ + F
Sbjct:    44 KTTRGRQKIEIKKIEEETKRQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDRIYRF 103

Query:    65 GHPNVDSIIDRYLARNSNPPSE--SGTNRLIEAHR 97
             GH  VD++ID+YL R S    E  SG N   E  R
Sbjct:   104 GH--VDALIDKYL-RKSPVKLEGYSGDNAADEESR 135

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	212
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	2e-31
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	1e-26
smart00432	59	smart00432, MADS, MADS domain	8e-26
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	2e-25
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	4e-14
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	1e-06

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  109 bits (274), Expect = 2e-31
 Identities = 34/69 (49%), Positives = 47/69 (68%)

Query: 9  GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
          GR KI I +I    + QVTFSKRR G+ KKA ELS LC  ++A+I+FS + K + F  P+
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPS 60

Query: 69 VDSIIDRYL 77
          ++ II+RY 
Sbjct: 61 MEKIIERYQ 69

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 96.4 bits (241), Expect = 1e-26
 Identities = 34/59 (57%), Positives = 41/59 (69%)

Query: 9  GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHP 67
          GR KI I +I  K   QVTFSKRR G+FKKASELS LC  ++A+IVFSP+ K + F   
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score = 94.2 bits (235), Expect = 8e-26
 Identities = 34/59 (57%), Positives = 42/59 (71%)

Query: 9  GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHP 67
          GR+KI I +I  K + QVTFSKRR G+FKKA ELS LC  ++A+IVFSP  K + F  P
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 93.9 bits (234), Expect = 2e-25
 Identities = 37/74 (50%), Positives = 51/74 (68%), Gaps = 1/74 (1%)

Query: 9  GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGH-P 67
          GR+KI I +I  K    VTFSKRR G+FKKASELSTLCG ++A+IV+SP+ K + F    
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 68 NVDSIIDRYLARNS 81
           V+ +I R+   ++
Sbjct: 61 EVEGVISRFEVLSA 74

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 63.6 bits (155), Expect = 4e-14
 Identities = 25/49 (51%), Positives = 35/49 (71%)

Query: 16 SKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSF 64
           +I  K++ QVTFSKRR G+FKKA ELS LC  ++A+I+FS   K + +
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEY 49

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 26/74 (35%), Positives = 40/74 (54%)

Query: 9   GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
             +KI IS I  K    VTFSKR+ G+ KKA ELS L G ++ ++V S      +F  P 
Sbjct: 82  TGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPK 141

Query: 69  VDSIIDRYLARNSN 82
           ++S++     ++  
Sbjct: 142 LESVVKSLEGKSLI 155

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	212
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.98
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.96
smart00432	59	MADS MADS domain.	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.96
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.93
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.83
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.47
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	98.5

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=6e-34  Score=229.27  Aligned_cols=73  Identities=55%  Similarity=0.924  Sum_probs=71.2

Q ss_pred             CCcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCC--chhhHhHhhhcC
Q 036705            8 AGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN--VDSIIDRYLARN   80 (212)
Q Consensus         8 mgR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~ps--v~~Vl~Ry~~~~   80 (212)
                      |||+||+|++|+|+++|+|||+|||.||||||+||||||||+||+|||||+|++|+||+|+  |+.|++||.+..
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~   75 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLT   75 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhh
Confidence            8999999999999999999999999999999999999999999999999999999999988  999999998865

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.98  E-value=6.7e-34  Score=195.77  Aligned_cols=72  Identities=47%  Similarity=0.839  Sum_probs=70.6

Q ss_pred             CcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHhhhcC
Q 036705            9 GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLARN   80 (212)
Q Consensus         9 gR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~~~~   80 (212)
                      ||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||+|||||+|++|.|++|++++||+||++.+
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~   72 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTS   72 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhcc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999875

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=6.8e-31  Score=183.41  Aligned_cols=72  Identities=51%  Similarity=0.856  Sum_probs=69.5

Q ss_pred             CcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCC-chhhHhHhhhcC
Q 036705            9 GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN-VDSIIDRYLARN   80 (212)
Q Consensus         9 gR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~ps-v~~Vl~Ry~~~~   80 (212)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+.+.|++++ ++.++++|...+
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~   73 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLS   73 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcC
Confidence            799999999999999999999999999999999999999999999999999999998877 999999998775

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.96  E-value=7.5e-31  Score=170.63  Aligned_cols=59  Identities=58%  Similarity=0.969  Sum_probs=58.1

Q ss_pred             CcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCC
Q 036705            9 GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHP   67 (212)
Q Consensus         9 gR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~p   67 (212)
                      ||+||+|++|+|+++|++||+||+.||||||+||||||||+||+|||||+|++|.|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999987

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.96  E-value=6.1e-30  Score=166.49  Aligned_cols=59  Identities=58%  Similarity=0.899  Sum_probs=57.7

Q ss_pred             CcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCC
Q 036705            9 GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHP   67 (212)
Q Consensus         9 gR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~p   67 (212)
                      ||+||+|++|+|+..|++||+||+.||||||+||||||||+||+|||||+|+++.|++|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            79999999999999999999999999999999999999999999999999999999876

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.93  E-value=8e-28  Score=151.50  Aligned_cols=51  Identities=59%  Similarity=0.992  Sum_probs=46.5

Q ss_pred             eeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCC
Q 036705           16 SKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGH   66 (212)
Q Consensus        16 k~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~   66 (212)
                      |+|+|++.|++||+||+.||||||+||||||||+||+|||||+|++|.|++
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            589999999999999999999999999999999999999999999999964

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.83  E-value=2.1e-21  Score=160.46  Aligned_cols=78  Identities=38%  Similarity=0.574  Sum_probs=70.3

Q ss_pred             CCCCCCCcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCch---------hhH
Q 036705            3 MKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVD---------SII   73 (212)
Q Consensus         3 ~~~~~mgR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~---------~Vl   73 (212)
                      ..|++.||+||+|++|+|+..|.+||+|||.||||||+|||||+|.+|-|+|.|+.|.+|.|++|..+         .+|
T Consensus        57 ~~k~~~gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lI  136 (338)
T KOG0015|consen   57 GGKKTTGRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALI  136 (338)
T ss_pred             CCccccceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999764         455


Q ss_pred             hHhhhcC
Q 036705           74 DRYLARN   80 (212)
Q Consensus        74 ~Ry~~~~   80 (212)
                      .-.++.+
T Consensus       137 q~cLn~p  143 (338)
T KOG0015|consen  137 QACLNAP  143 (338)
T ss_pred             HHHhcCC
Confidence            5555555

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.47  E-value=1.9e-14  Score=124.42  Aligned_cols=69  Identities=38%  Similarity=0.575  Sum_probs=64.9

Q ss_pred             CCCcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhH
Q 036705            7 CAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDR   75 (212)
Q Consensus         7 ~mgR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~R   75 (212)
                      .|||+|+.|.+|+|+.+|.|||+||+.||+|||.||++|.|.+|.++|.|..|.++.|+.|..+.|+.-
T Consensus        80 ~~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~  148 (412)
T COG5068          80 SVTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKS  148 (412)
T ss_pred             ccccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccccc
Confidence            689999999999999999999999999999999999999999999999999999999999987666543

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=98.50  E-value=5.9e-07  Score=64.77  Aligned_cols=79  Identities=15%  Similarity=0.218  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHhhccccccCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHhhhH
Q 036705          110 QVLHQLEVEKKHGEVMSEIRKASRSQCWWEAPINELGLHELEQLKTAMEELKKNVEQQANKILIDSKNNPSPSFARALDI  189 (212)
Q Consensus       110 ~l~~~le~~kk~~e~L~~~~~~~~~~~~~~~~l~~Ls~eEL~~L~~~Le~~l~~V~~R~~~L~~~~~s~~~~~~~~~~~~  189 (212)
                      .+..++...+..++.|+...     +++.|++|++|+++||..|+..|+..+..|+.|+.+++.+++..+.......-+.
T Consensus        16 ~~~~e~~~L~~~~~~L~~~~-----R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~e   90 (100)
T PF01486_consen   16 ELQQEIAKLRKENESLQKEL-----RHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEE   90 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----hccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444454433     2567899999999999999999999999999999999999999888887776665


Q ss_pred             hhhh
Q 036705          190 IMII  193 (212)
Q Consensus       190 ~~~~  193 (212)
                      +..+
T Consensus        91 n~~L   94 (100)
T PF01486_consen   91 NNQL   94 (100)
T ss_pred             HHHH
Confidence            5544

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	212
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		1e-14
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		2e-14
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		3e-14
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		1e-13
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		2e-13
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		2e-13
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		2e-08
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		1e-06
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		2e-06

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 59/88 (67%), Gaps = 3/88 (3%)
Query: 9  GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
          GR+KI I++I  + + QVTF+KR+ G+ KKA ELS LC  +IA+I+F+ +NK F +   +
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 69 VDSIIDRYLARNSNPPSESGTNR-LIEA 95
          +D ++ +Y     N P ES TN  ++EA
Sbjct: 61 MDKVLLKYT--EYNEPHESRTNSDIVEA 86

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 55/82 (67%), Gaps = 2/82 (2%)
Query: 9  GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
          GR+KI IS+I  + + QVTF+KR+ G+ KKA ELS LC  +IA+I+F+ AN+ F +   +
Sbjct: 2  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD 61
Query: 69 VDSIIDRYLARNSNPPSESGTN 90
          +D ++ +Y     + P ES TN
Sbjct: 62 MDRVLLKYT--EYSEPHESRTN 81

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 55/82 (67%), Gaps = 2/82 (2%)
Query: 9  GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
          GR+KI IS+I  + + QVTF+KR+ G+ KKA ELS LC  +IA+I+F+ AN+ F +   +
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD 60
Query: 69 VDSIIDRYLARNSNPPSESGTN 90
          +D ++ +Y     + P ES TN
Sbjct: 61 MDRVLLKYT--EYSEPHESRTN 80

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 53/79 (67%), Gaps = 2/79 (2%)
Query: 9  GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
          GR+KI I++I  + + QVTF+KR+ G+ KKA ELS LC  +IA+I+F+ +NK F +   +
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 69 VDSIIDRYLARNSNPPSES 87
          +D ++ +Y     N P ES
Sbjct: 61 MDKVLLKYT--EYNEPHES 77

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 54/82 (65%), Gaps = 2/82 (2%)
Query: 9  GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
          GR+KI I++I  + + QVTF+KR+ G+ KKA ELS L   +IA+I+F+ +NK F +   +
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTD 60
Query: 69 VDSIIDRYLARNSNPPSESGTN 90
          +D ++ +Y     N P ES TN
Sbjct: 61 MDKVLLKYT--EYNEPHESRTN 80

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 50/70 (71%)
Query: 9  GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
          GR+KI I++I  + + QVTF+KR+ G+ KKA ELS LC  +IA+I+F+ +NK F +   +
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60
Query: 69 VDSIIDRYLA 78
          +D ++ +Y A
Sbjct: 61 MDKVLLKYTA 70

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 39/71 (54%)
Query: 10 RQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNV 69
          R+KI I  I  K    VTFSKR+ G+ KKA ELS L G  + ++V S     ++F  P  
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKF 77
Query: 70 DSIIDRYLARN 80
          + I+ +   RN
Sbjct: 78 EPIVTQQEGRN 88

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%)
Query: 5  KPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSF 64
          K   GR KI +  I  K     TFSKR+TG+ KKA ELSTL G  + ++V S     ++F
Sbjct: 7  KKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF 66
Query: 65 GHPNVDSII 73
              +  +I
Sbjct: 67 ATRKLQPMI 75

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 37/69 (53%)
Query: 5  KPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSF 64
          K   GR KI +  I  K     TFSKR+TG+ KKA ELSTL G  + ++V S     ++F
Sbjct: 6  KKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF 65
Query: 65 GHPNVDSII 73
              +  +I
Sbjct: 66 ATRKLQPMI 74
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	212
1hbx_A	92	SRF, serum response factor; gene regulation, trans	7e-31
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	1e-30
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	3e-29
1egw_A	77	MADS box transcription enhancer factor 2, polypept	2e-24
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	3e-24
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  107 bits (270), Expect = 7e-31
 Identities = 27/76 (35%), Positives = 38/76 (50%)

Query: 5  KPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSF 64
          K   GR KI +  I  K     TFSKR+TG+ KKA ELSTL G  + ++V S     ++F
Sbjct: 7  KKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF 66

Query: 65 GHPNVDSIIDRYLARN 80
              +  +I     + 
Sbjct: 67 ATRKLQPMITSETGKA 82

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  107 bits (269), Expect = 1e-30
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 5  KPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSF 64
          K   GR KI +  I  K     TFSKR+TG+ KKA ELSTL G  + ++V S     ++F
Sbjct: 6  KKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF 65

Query: 65 GHPNVDSIIDRYLARN------SNPPSESGTN 90
              +  +I     +       ++P S   ++
Sbjct: 66 ATRKLQPMITSETGKALIQTCLNSPDSPPRSD 97

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  104 bits (260), Expect = 3e-29
 Identities = 28/77 (36%), Positives = 39/77 (50%)

Query: 4  KKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFS 63
                R+KI I  I  K    VTFSKR+ G+ KKA ELS L G  + ++V S     ++
Sbjct: 12 NGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYT 71

Query: 64 FGHPNVDSIIDRYLARN 80
          F  P  + I+ +   RN
Sbjct: 72 FSTPKFEPIVTQQEGRN 88

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score = 90.9 bits (226), Expect = 2e-24
 Identities = 34/79 (43%), Positives = 53/79 (67%), Gaps = 2/79 (2%)

Query: 9  GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
          GR+KI I++I  + + QVTF+KR+ G+ KKA ELS LC  +IA+I+F+ +NK F +   +
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 69 VDSIIDRYLARNSNPPSES 87
          +D ++ +Y     N P ES
Sbjct: 61 MDKVLLKY--TEYNEPHES 77

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score = 91.0 bits (226), Expect = 3e-24
 Identities = 36/82 (43%), Positives = 55/82 (67%), Gaps = 2/82 (2%)

Query: 9  GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
          GR+KI I++I  + + QVTF+KR+ G+ KKA ELS LC  +IA+I+F+ +NK F +   +
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 69 VDSIIDRYLARNSNPPSESGTN 90
          +D ++ +Y     N P ES TN
Sbjct: 61 MDKVLLKY--TEYNEPHESRTN 80

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 27/191 (14%), Positives = 58/191 (30%), Gaps = 68/191 (35%)

Query: 67  PNVDSIIDRYLARNSNPPS-----ESGTNRL-----IEAHRNANIRELNMQLTQVLHQLE 116
            N   ++         P           +RL     + A  N +  +  ++L Q L +L 
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 117 VEKK---HGEVM---------SEIRKASRSQC------WWEAPINELGLHE-----LEQL 153
             K     G  +          ++  + + QC      +W   +N L         LE L
Sbjct: 149 PAKNVLIDG--VLGSGKTWVALDVCLSYKVQCKMDFKIFW---LN-LKNCNSPETVLEML 202

Query: 154 KTAMEELKKNVEQQAN----------------KILIDSKNNP----------SPSFARAL 187
           +  + ++  N   +++                + L+ SK             +     A 
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 188 DI---IMIISR 195
           ++   I++ +R
Sbjct: 263 NLSCKILLTTR 273

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	212
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=7.8e-39  Score=222.99  Aligned_cols=79  Identities=41%  Similarity=0.727  Sum_probs=74.3

Q ss_pred             CcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHhhhcCCCCCCCCc
Q 036705            9 GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLARNSNPPSESG   88 (212)
Q Consensus         9 gR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~~~~~~~~~~~~   88 (212)
                      ||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|++|+|+.||+||...+ ++++..+
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~-~~~~~~~   79 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN-EPHESRT   79 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCC-SCCCEEC
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcC-cccccCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999987 5554333

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=1.3e-38  Score=216.75  Aligned_cols=72  Identities=43%  Similarity=0.768  Sum_probs=70.2

Q ss_pred             CcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHhhhcC
Q 036705            9 GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLARN   80 (212)
Q Consensus         9 gR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~~~~   80 (212)
                      ||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++|+|++|+|+.||+||...+
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~   72 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN   72 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC-
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhcc
Confidence            899999999999999999999999999999999999999999999999999999999999999999999876

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=7.9e-38  Score=218.76  Aligned_cols=76  Identities=36%  Similarity=0.493  Sum_probs=72.5

Q ss_pred             CCCCCCCcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHhhh
Q 036705            3 MKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLA   78 (212)
Q Consensus         3 ~~~~~mgR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~~   78 (212)
                      ..|++|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+|+.||++|..
T Consensus         5 ~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G   80 (92)
T 1hbx_A            5 PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   80 (92)
T ss_dssp             -CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred             cCCCCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence            4688999999999999999999999999999999999999999999999999999999999999999999998754

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=1.2e-37  Score=220.52  Aligned_cols=77  Identities=35%  Similarity=0.541  Sum_probs=71.2

Q ss_pred             CCCCCCCcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHhhhc
Q 036705            3 MKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLAR   79 (212)
Q Consensus         3 ~~~~~mgR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~~~   79 (212)
                      ..+++|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|++..|+++|...
T Consensus        11 ~~~~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~   87 (100)
T 1mnm_A           11 NNGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR   87 (100)
T ss_dssp             ----CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred             CCCCCCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999653

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=4.2e-37  Score=219.13  Aligned_cols=74  Identities=36%  Similarity=0.510  Sum_probs=71.3

Q ss_pred             CCCCCCCcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHh
Q 036705            3 MKKPCAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRY   76 (212)
Q Consensus         3 ~~~~~mgR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry   76 (212)
                      ..|++|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+|+.||+++
T Consensus         4 ~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~   77 (103)
T 1k6o_B            4 PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE   77 (103)
T ss_dssp             -CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred             CCCCCCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	212
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	1e-29
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	2e-29
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	1e-28

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  103 bits (259), Expect = 1e-29
 Identities = 28/72 (38%), Positives = 39/72 (54%)

Query: 9  GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
           R+KI I  I  K    VTFSKR+ G+ KKA ELS L G  + ++V S     ++F  P 
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 62

Query: 69 VDSIIDRYLARN 80
           + I+ +   RN
Sbjct: 63 FEPIVTQQEGRN 74

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 2e-29
 Identities = 30/68 (44%), Positives = 49/68 (72%)

Query: 9  GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
          GR+KI I++I  + + QVTF+KR+ G+ KKA ELS LC  +IA+I+F+ +NK F +   +
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD 60

Query: 69 VDSIIDRY 76
          +D ++ +Y
Sbjct: 61 MDKVLLKY 68

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (251), Expect = 1e-28
 Identities = 26/72 (36%), Positives = 37/72 (51%)

Query: 9  GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPN 68
          GR KI +  I  K     TFSKR+TG+ KKA ELSTL G  + ++V S     ++F    
Sbjct: 3  GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 62

Query: 69 VDSIIDRYLARN 80
          +  +I     + 
Sbjct: 63 LQPMITSETGKA 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	212
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-38  Score=211.74  Aligned_cols=70  Identities=43%  Similarity=0.780  Sum_probs=68.9

Q ss_pred             CcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHhhh
Q 036705            9 GRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLA   78 (212)
Q Consensus         9 gR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~~   78 (212)
                      ||+||+|++|+|+.+|++||+|||.||||||+|||+||||+||+|||||+|++|+|++|++++|++||..
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999975

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-37  Score=211.09  Aligned_cols=73  Identities=36%  Similarity=0.530  Sum_probs=70.7

Q ss_pred             CCCcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHhhhc
Q 036705            7 CAGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLAR   79 (212)
Q Consensus         7 ~mgR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~~~   79 (212)
                      ++||+||+|++|+|+..|+|||+|||.||||||+||||||||+||+|||||+|++|+|++|+++.|+++|...
T Consensus         1 ~~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~~   73 (84)
T d1srsa_           1 TRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHHH
T ss_pred             CCCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHHH
Confidence            5799999999999999999999999999999999999999999999999999999999999999999999753

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-36  Score=208.76  Aligned_cols=72  Identities=38%  Similarity=0.601  Sum_probs=70.3

Q ss_pred             CCcccceeeeeCCCCCcceeccccccchhhhhhhhhhhccccEEEEeeCCCCcccccCCCCchhhHhHhhhc
Q 036705            8 AGRQKIAISKIPKKNHLQVTFSKRRTGVFKKASELSTLCGIDIAIIVFSPANKAFSFGHPNVDSIIDRYLAR   79 (212)
Q Consensus         8 mgR~Ki~ik~I~n~~~R~~tF~KRr~GL~KKA~ELs~LCgvevalIvfsp~gk~~~f~~psv~~Vl~Ry~~~   79 (212)
                      .||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+|+.|++||...
T Consensus         2 k~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~~~   73 (85)
T d1mnma_           2 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR   73 (85)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred             CCccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHhcc
Confidence            599999999999999999999999999999999999999999999999999999999999999999999864