Citrus Sinensis ID: 036722

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-
MDALSLLLICCKLLLIFSEFSFASDVLTSSQSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSSGLLTINRTGNPVLTSLSMGIVWSASLSKEVQQTPVILQLLDSGNLILRGEQDGDSENYFWQSFDYPSDTLLPGMKLGWDLKTGLERRVTSWKSSNDPSPGDLIWKIERQGNPELVMWKGSTKFYRTGPWNGVTFSASSIKPNPIFNSSFVSNEDELYYTYILVDKAVFSRTLVNQTLSLRQRFVWSKATQSWELYISVPRDQCDTYNLCGDYGICSISKSPVCQ
cccccHHHHHHHHHHHHccccccccccccccccccccEEEccccEEEEEEcccccccccEEEEEccccccccEEEEcccccccccccEEEEEcccccEEEEcccccEEEcccccccccccccEEEEEccccEEEEEccccccccEEEEcccccccccccccEEccEEccccEEEEEEcccccccccccEEEEEEcccccEEEEEEccEEEEEEccccccEEEcccccccccEEEEEEEcccEEEEEEEEccccEEEEEEEcccccEEEEEEEEcccccEEEEEEccccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHccHHEEEEcccccccccccccEEEccccEEEEEEEcccccccEEEEEEEEEccccEEEEEEEcccccccccEEEEEEccccEEEEcccccEEEEcccccccccccHHEEEcccccEEEEEcccccccccEEEEccccccccccccccccccccccccEEEccccccccccccEEEEEccccccEEEEEcccEEEEEccccccEEEcccccccccEEEEEEEEcccEEEEEEEEEcccEEEEEEEccccEEEEEEEEccccccEEEEEEccccccccHcHcccccEEccccccccc
MDALSLLLICCKLLLIFSefsfasdvltssqslsdgntliskggsfelgffspgssenryvgiwyksipvKTVVWVANRlkpindssglltinrtgnpvltsLSMGIVWSASLSKEVQQTPVILQLLdsgnlilrgeqdgdsenyfwqsfdypsdtllpgmklgwdlktgLERRVtswkssndpspgdlIWKIErqgnpelvmwkgstkfyrtgpwngvtfsassikpnpifnssfvsnedelYYTYILVDKAVFSRTLVNQTLSLRQRFVWSKATQSWELYIsvprdqcdtynlcgdygicsiskspvcq
MDALSLLLICCKLLLIFSEFSFASDVLTSSQSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKpindssglltinRTGNPVLTSLSMGIVWSASLSKEVQQTPVILQLLDSGNLILRGEQDGDSENYFWQSFDYPSDTLLPGMKLGWDLKTGLERrvtswkssndpspgdlIWKIERQGNPELVMWKGSTKFYRTGPWNGVTFSASSIKPNPIFNSSFVSNEDELYYTYILVDKAVFSRTLVNQTLSLRQRFVWSKATQSWELYISVPRDQCDTYNLCGDYGICSISKSPVCQ
MDAlslllicckllliFSEFSFASDVLTSSQSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSSGLLTINRTGNPVLTSLSMGIVWSASLSKEVQQTPVILQLLDSGNLILRGEQDGDSENYFWQSFDYPSDTLLPGMKLGWDLKTGLERRVTSWKSSNDPSPGDLIWKIERQGNPELVMWKGSTKFYRTGPWNGVTFSASSIKPNPIFNSSFVSNEDELYYTYILVDKAVFSRTLVNQTLSLRQRFVWSKATQSWELYISVPRDQCDTYNLCGDYGICSISKSPVCQ
***LSLLLICCKLLLIFSEFSFASDVLT*********TLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSSGLLTINRTGNPVLTSLSMGIVWSASLSKEVQQTPVILQLLDSGNLILRGEQDGDSENYFWQSFDYPSDTLLPGMKLGWDLKTGLERRVTSW*********DLIWKIERQGNPELVMWKGSTKFYRTGPWNGVTFSASSIKPNPIFNSSFVSNEDELYYTYILVDKAVFSRTLVNQTLSLRQRFVWSKATQSWELYISVPRDQCDTYNLCGDYGICSI*******
*DALSLLLICCKLLLIFSEFSFASDVLTSSQSLSD**TLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSSGLLTINRTGNPVLTSLSMGIVWSASLSK****TPVILQLLDSGNLILRGEQDGDSENYFWQSFDYPSDTLLPGMKLGWDLKTGLERRVTSWKSSNDPSPGDLIWKIERQGNPELVMWKGSTKFYRTGPWNGVTFSASSIKPNPIFNSSFVSNEDELYYTYILVDKAVFSRTLVNQTLSLRQRFVWSKATQSWELYISVPRDQCDTYNLCGDYGICSISKSPVC*
MDALSLLLICCKLLLIFSEFSFASDVLTSSQSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSSGLLTINRTGNPVLTSLSMGIVWSASLSKEVQQTPVILQLLDSGNLILRGEQDGDSENYFWQSFDYPSDTLLPGMKLGWDLKTGLER***********SPGDLIWKIERQGNPELVMWKGSTKFYRTGPWNGVTFSASSIKPNPIFNSSFVSNEDELYYTYILVDKAVFSRTLVNQTLSLRQRFVWSKATQSWELYISVPRDQCDTYNLCGDYGICSISKSPVCQ
*DALSLLLICCKLLLIFSEFSFASDVLTSSQSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSSGLLTINRTGNPVLTSLSMGIVWSASLSKEVQQTPVILQLLDSGNLILRGEQDGDSENYFWQSFDYPSDTLLPGMKLGWDLKTGLERRVTSWKSSNDPSPGDLIWKIERQGNPELVMWKGSTKFYRTGPWNGVTFSASSIKPNPIFNSSFVSNEDELYYTYILVDKAVFSRTLVNQTLSLRQRFVWSKATQSWELYISVPRDQCDTYNLCGDYGICSISKSP*C*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDALSLLLICCKLLLIFSEFSFASDVLTSSQSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSSGLLTINRTGNPVLTSLSMGIVWSASLSKEVQQTPVILQLLDSGNLILRGEQDGDSENYFWQSFDYPSDTLLPGMKLGWDLKTGLERRVTSWKSSNDPSPGDLIWKIERQGNPELVMWKGSTKFYRTGPWNGVTFSASSIKPNPIFNSSFVSNEDELYYTYILVDKAVFSRTLVNQTLSLRQRFVWSKATQSWELYISVPRDQCDTYNLCGDYGICSISKSPVCQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query311 2.2.26 [Sep-21-2011]
O81832 783 G-type lectin S-receptor- yes no 0.948 0.376 0.469 2e-75
O81905 850 Receptor-like serine/thre no no 0.929 0.34 0.428 8e-67
P17840 435 S-locus-specific glycopro N/A no 0.974 0.696 0.414 2e-65
P07761 436 S-locus-specific glycopro N/A no 0.987 0.704 0.424 9e-65
Q9ZT07 833 G-type lectin S-receptor- no no 0.881 0.328 0.448 1e-64
Q9LPZ3 845 G-type lectin S-receptor- no no 0.890 0.327 0.422 1e-60
Q09092 857 Putative serine/threonine N/A no 0.971 0.352 0.403 3e-60
P22553 435 S-locus-specific glycopro N/A no 0.974 0.696 0.395 6e-60
P0DH86 853 G-type lectin S-receptor- no no 0.919 0.335 0.417 1e-58
P0DH87 546 Putative inactive G-type no no 0.922 0.525 0.416 3e-58
>sp|O81832|Y4729_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 OS=Arabidopsis thaliana GN=At4g27290 PE=3 SV=4 Back     alignment and function desciption
 Score =  282 bits (722), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 144/307 (46%), Positives = 203/307 (66%), Gaps = 12/307 (3%)

Query: 14  LLIFSEFSF-----ASDVLTSSQSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSI 68
           LLI S FS      A+D+L ++Q+L DG+T++S+GGSFE+GFFSPG S NRY+GIWYK I
Sbjct: 9   LLIISLFSTILLAQATDILIANQTLKDGDTIVSQGGSFEVGFFSPGGSRNRYLGIWYKKI 68

Query: 69  PVKTVVWVANRLKPINDSSGLLTINRTGNPVLTSLSMGIVWSASLSKEVQQTPV---ILQ 125
            ++TVVWVANR  P+ D SG L ++  G+  L +    I+WS+S S   Q+  +   I+Q
Sbjct: 69  SLQTVVWVANRDSPLYDLSGTLKVSENGSLCLFNDRNHIIWSSSSSPSSQKASLRNPIVQ 128

Query: 126 LLDSGNLILRGEQDGDSENYFWQSFDYPSDTLLPGMKLGWDLKTGLERRVTSWKSSNDPS 185
           +LD+GNL++R    GD ++Y WQS DYP D  LPGMK G +  TGL R +TSW++ +DPS
Sbjct: 129 ILDTGNLVVR--NSGDDQDYIWQSLDYPGDMFLPGMKYGLNFVTGLNRFLTSWRAIDDPS 186

Query: 186 PGDLIWKIERQGNPELVMWKGSTKFYRTGPWNGVTFSA-SSIKPNPIFNSSFVSNEDELY 244
            G+   K++  G P+  + K S   +RTGPWNG+ F+   ++KPNPI+   +V  E+E+Y
Sbjct: 187 TGNYTNKMDPNGVPQFFLKKNSVVVFRTGPWNGLRFTGMPNLKPNPIYRYEYVFTEEEVY 246

Query: 245 YTYILVDKAVFSRTLVNQTLSLRQRFVWSKATQSWELYISVPRDQCDTYNLCGDYGICSI 304
           YTY L + +V +R  +N   +L QR+ W    QSW  Y+S   D CD Y LCG YG C+I
Sbjct: 247 YTYKLENPSVLTRMQLNPNGAL-QRYTWVDNLQSWNFYLSAMMDSCDQYTLCGSYGSCNI 305

Query: 305 SKSPVCQ 311
           ++SP C+
Sbjct: 306 NESPACR 312

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1
>sp|O81905|SD18_ARATH Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana GN=SD18 PE=1 SV=1 Back     alignment and function description
>sp|P17840|SLSG3_BRAOL S-locus-specific glycoprotein S13 OS=Brassica oleracea GN=SLSG PE=2 SV=2 Back     alignment and function description
>sp|P07761|SLSG6_BRAOL S-locus-specific glycoprotein S6 OS=Brassica oleracea GN=SLSG PE=2 SV=2 Back     alignment and function description
>sp|Q9ZT07|RKS1_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=2 SV=3 Back     alignment and function description
>sp|Q9LPZ3|Y1141_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana GN=At1g11410 PE=3 SV=3 Back     alignment and function description
>sp|Q09092|SRK6_BRAOE Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=2 Back     alignment and function description
>sp|P22553|SLSG2_BRAOA S-locus-specific glycoprotein BS29-2 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1 Back     alignment and function description
>sp|P0DH86|SRK_ARATH G-type lectin S-receptor-like serine/threonine-protein kinase SRK OS=Arabidopsis thaliana GN=SRK PE=2 SV=1 Back     alignment and function description
>sp|P0DH87|PSRK_ARATH Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK OS=Arabidopsis thaliana GN=PSEUDOSRKA PE=5 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query311
224124250 820 predicted protein [Populus trichocarpa] 0.942 0.357 0.595 8e-99
224113153 785 predicted protein [Populus trichocarpa] 0.983 0.389 0.572 1e-98
224126243 836 predicted protein [Populus trichocarpa] 0.942 0.350 0.593 1e-98
224151394 439 predicted protein [Populus trichocarpa] 0.942 0.667 0.595 4e-98
224113157 786 predicted protein [Populus trichocarpa] 0.983 0.389 0.569 5e-98
224113149 820 predicted protein [Populus trichocarpa] 0.942 0.357 0.588 7e-98
224122938371 predicted protein [Populus trichocarpa] 0.874 0.733 0.615 3e-96
356514933 828 PREDICTED: G-type lectin S-receptor-like 0.990 0.371 0.541 1e-90
224115136 843 predicted protein [Populus trichocarpa] 0.980 0.361 0.543 2e-90
356514895 821 PREDICTED: G-type lectin S-receptor-like 0.993 0.376 0.512 8e-88
>gi|224124250|ref|XP_002319283.1| predicted protein [Populus trichocarpa] gi|222857659|gb|EEE95206.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  366 bits (939), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 178/299 (59%), Positives = 225/299 (75%), Gaps = 6/299 (2%)

Query: 17  FSEFSFASDVLTSSQSLSDG--NTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVV 74
           FS F   ++ LT SQS+ DG   TL+SK GSFELGFFSPGSS NRYVGIWYK+IPV+TVV
Sbjct: 18  FSRFCNTANTLTLSQSIRDGGTRTLVSKDGSFELGFFSPGSSRNRYVGIWYKNIPVRTVV 77

Query: 75  WVANRLKPINDSSGLLTINRTGNPVLTSLSMG-IVWSASLSKEVQQTPVILQLLDSGNLI 133
           WVANR  PINDSSG L ++ TGN VL S +   +VWS++  K  Q    + +L DSGNL+
Sbjct: 78  WVANRNNPINDSSGFLMLDNTGNFVLVSNNNSTVVWSSNSKKAAQS--AMGELQDSGNLV 135

Query: 134 LRGEQDGDSENYFWQSFDYPSDTLLPGMKLGWDLKTGLERRVTSWKSSNDPSPGDLIWKI 193
           LR E+D +S  Y WQSFDYPSDTLLPGMKLGWDL+ GL+RR+++WKS +DPS GD  W  
Sbjct: 136 LRDEKDDNSGIYLWQSFDYPSDTLLPGMKLGWDLRIGLDRRLSAWKSPDDPSSGDFTWGT 195

Query: 194 ERQGNPELVMWKGSTKFYRTGPWNGVTFSAS-SIKPNPIFNSSFVSNEDELYYTYILVDK 252
           + Q NPELVMWKGS K+YR+GPWNG+ FS   +++ NP+F   FV + +E+YYTY L +K
Sbjct: 196 QLQSNPELVMWKGSKKYYRSGPWNGIGFSGGLALRINPVFYFDFVDDGEEVYYTYNLKNK 255

Query: 253 AVFSRTLVNQTLSLRQRFVWSKATQSWELYISVPRDQCDTYNLCGDYGICSISKSPVCQ 311
           ++ +R ++NQT   RQR+ W++  Q+W LY +VPRD CDTYNLCG YG C +S+SPVCQ
Sbjct: 256 SLITRIVMNQTTYFRQRYTWNEINQTWVLYATVPRDYCDTYNLCGAYGNCIMSQSPVCQ 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224113153|ref|XP_002332643.1| predicted protein [Populus trichocarpa] gi|222832838|gb|EEE71315.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224126243|ref|XP_002319790.1| predicted protein [Populus trichocarpa] gi|222858166|gb|EEE95713.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224151394|ref|XP_002337099.1| predicted protein [Populus trichocarpa] gi|222838019|gb|EEE76384.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224113157|ref|XP_002332644.1| predicted protein [Populus trichocarpa] gi|222832839|gb|EEE71316.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224113149|ref|XP_002332642.1| predicted protein [Populus trichocarpa] gi|222832837|gb|EEE71314.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122938|ref|XP_002330401.1| predicted protein [Populus trichocarpa] gi|222871786|gb|EEF08917.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356514933|ref|XP_003526156.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] Back     alignment and taxonomy information
>gi|224115136|ref|XP_002316951.1| predicted protein [Populus trichocarpa] gi|222860016|gb|EEE97563.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356514895|ref|XP_003526137.1| PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query311
TAIR|locus:2131684 783 AT4G27290 [Arabidopsis thalian 0.919 0.365 0.470 8.4e-74
TAIR|locus:2141181 850 RK3 "receptor kinase 3" [Arabi 0.938 0.343 0.427 1.5e-67
TAIR|locus:2018506 847 RK2 "receptor kinase 2" [Arabi 0.935 0.343 0.418 1e-59
TAIR|locus:2018546 843 RK1 "receptor kinase 1" [Arabi 0.913 0.336 0.421 1.5e-58
TAIR|locus:2088619 439 AT3G12000 [Arabidopsis thalian 0.919 0.651 0.421 6.8e-56
TAIR|locus:2059103 828 AT2G19130 [Arabidopsis thalian 0.935 0.351 0.383 6.3e-55
TAIR|locus:2141176 849 B120 [Arabidopsis thaliana (ta 0.919 0.336 0.372 3.3e-50
TAIR|locus:2200908 842 AT1G61610 [Arabidopsis thalian 0.893 0.330 0.373 1.4e-49
TAIR|locus:2131694 815 AT4G27300 [Arabidopsis thalian 0.913 0.348 0.397 1.5e-47
TAIR|locus:2200151 830 SD1-13 "S-domain-1 13" [Arabid 0.909 0.340 0.374 2.1e-47
TAIR|locus:2131684 AT4G27290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
 Identities = 138/293 (47%), Positives = 197/293 (67%)

Query:    23 ASDVLTSSQSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKP 82
             A+D+L ++Q+L DG+T++S+GGSFE+GFFSPG S NRY+GIWYK I ++TVVWVANR  P
Sbjct:    23 ATDILIANQTLKDGDTIVSQGGSFEVGFFSPGGSRNRYLGIWYKKISLQTVVWVANRDSP 82

Query:    83 INDSSGLLTINRTGNPVLTSLSMGIVWSASLSKEVQQTPV---ILQLLDSGNLILRGEQD 139
             + D SG L ++  G+  L +    I+WS+S S   Q+  +   I+Q+LD+GNL++R    
Sbjct:    83 LYDLSGTLKVSENGSLCLFNDRNHIIWSSSSSPSSQKASLRNPIVQILDTGNLVVRNS-- 140

Query:   140 GDSENYFWQSFDYPSDTLLPGMKLGWDLKTGLERRVTSWKSSNDPSPGDLIWKIERQGNP 199
             GD ++Y WQS DYP D  LPGMK G +  TGL R +TSW++ +DPS G+   K++  G P
Sbjct:   141 GDDQDYIWQSLDYPGDMFLPGMKYGLNFVTGLNRFLTSWRAIDDPSTGNYTNKMDPNGVP 200

Query:   200 ELVMWKGSTKFYRTGPWNGVTFSAS-SIKPNPIFNSSFVSNEDELYYTYILVDKAVFSRT 258
             +  + K S   +RTGPWNG+ F+   ++KPNPI+   +V  E+E+YYTY L + +V +R 
Sbjct:   201 QFFLKKNSVVVFRTGPWNGLRFTGMPNLKPNPIYRYEYVFTEEEVYYTYKLENPSVLTRM 260

Query:   259 LVNQTLSLRQRFVWSKATQSWELYISVPRDQCDTYNLCGDYGICSISKSPVCQ 311
              +N   +L QR+ W    QSW  Y+S   D CD Y LCG YG C+I++SP C+
Sbjct:   261 QLNPNGAL-QRYTWVDNLQSWNFYLSAMMDSCDQYTLCGSYGSCNINESPACR 312
GO:0004672 "protein kinase activity" evidence=IEA;ISS
GO:0004674 "protein serine/threonine kinase activity" evidence=IEA
GO:0004713 "protein tyrosine kinase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006468 "protein phosphorylation" evidence=IEA
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
GO:0030246 "carbohydrate binding" evidence=IEA
GO:0048544 "recognition of pollen" evidence=IEA
GO:0048765 "root hair cell differentiation" evidence=RCA
TAIR|locus:2141181 RK3 "receptor kinase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018506 RK2 "receptor kinase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018546 RK1 "receptor kinase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088619 AT3G12000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059103 AT2G19130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141176 B120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200908 AT1G61610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131694 AT4G27300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200151 SD1-13 "S-domain-1 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query311
pfam00954110 pfam00954, S_locus_glycop, S-locus glycoprotein fa 4e-31
pfam01453109 pfam01453, B_lectin, D-mannose binding lectin 2e-30
cd00028116 cd00028, B_lectin, Bulb-type mannose-specific lect 2e-30
smart00108114 smart00108, B_lectin, Bulb-type mannose-specific l 3e-25
>gnl|CDD|201524 pfam00954, S_locus_glycop, S-locus glycoprotein family Back     alignment and domain information 
 Score =  112 bits (282), Expect = 4e-31
 Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 2/101 (1%)

Query: 211 YRTGPWNGVTFSASS-IKPNPIFNSSFVSNEDELYYTYILVDKAVFSRTLVNQTLSLRQR 269
           +R+GPWNG+ FS    ++    +  +F  N +E+YYTY + + +++SR  ++   SL +R
Sbjct: 1   WRSGPWNGIRFSGIPEMQKLSYYVYNFTENNEEVYYTYRMTNNSIYSRLTLSSEGSL-ER 59

Query: 270 FVWSKATQSWELYISVPRDQCDTYNLCGDYGICSISKSPVC 310
           F W   +Q W L+ S P+DQCD Y  CG YG C ++ SP C
Sbjct: 60  FTWIPNSQDWNLFWSAPKDQCDVYGRCGPYGYCDVNTSPKC 100

In Brassicaceae, self-incompatible plants have a self/non-self recognition system. This is sporophytically controlled by multiple alleles at a single locus (S). S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles. Length = 110
>gnl|CDD|216511 pfam01453, B_lectin, D-mannose binding lectin Back     alignment and domain information
>gnl|CDD|237995 cd00028, B_lectin, Bulb-type mannose-specific lectin Back     alignment and domain information
>gnl|CDD|214519 smart00108, B_lectin, Bulb-type mannose-specific lectin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 311
PF01453114 B_lectin: D-mannose binding lectin; InterPro: IPR0 99.96
cd00028116 B_lectin Bulb-type mannose-specific lectin. The do 99.94
smart00108114 B_lectin Bulb-type mannose-specific lectin. 99.93
PF00954110 S_locus_glycop: S-locus glycoprotein family; Inter 99.92
smart00108114 B_lectin Bulb-type mannose-specific lectin. 98.67
cd00028116 B_lectin Bulb-type mannose-specific lectin. The do 98.61
PF01453114 B_lectin: D-mannose binding lectin; InterPro: IPR0 98.42
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 80.03
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity Back     alignment and domain information 
Probab=99.96  E-value=3.4e-30  Score=208.28  Aligned_cols=111  Identities=45%  Similarity=0.715  Sum_probs=78.4

Q ss_pred             CCcEEEEcCCCCCCCC--CCceEEEecCCCeEEecCCCceeEee-ccCcCcCccceeeeeccCCCEEEeeccCCCCceee
Q 036722           70 VKTVVWVANRLKPIND--SSGLLTINRTGNPVLTSLSMGIVWSA-SLSKEVQQTPVILQLLDSGNLILRGEQDGDSENYF  146 (311)
Q Consensus        70 ~~~~vW~Anr~~pv~~--~~~~l~l~~~G~lvl~d~~~~~vWst-~~~~~~~~~~~~~~L~d~GNlVl~~~~~~~~~~~l  146 (311)
                      ++|+||+|||+.|+..  ...+|.|+.||+|+|+|..++++|++ ++.+.......| +|+|+|||||++.    .+.+|
T Consensus         1 ~~tvvW~an~~~p~~~~s~~~~L~l~~dGnLvl~~~~~~~iWss~~t~~~~~~~~~~-~L~~~GNlvl~d~----~~~~l   75 (114)
T PF01453_consen    1 PRTVVWVANRNSPLTSSSGNYTLILQSDGNLVLYDSNGSVIWSSNNTSGRGNSGCYL-VLQDDGNLVLYDS----SGNVL   75 (114)
T ss_dssp             ---------TTEEEEECETTEEEEEETTSEEEEEETTTEEEEE--S-TTSS-SSEEE-EEETTSEEEEEET----TSEEE
T ss_pred             CcccccccccccccccccccccceECCCCeEEEEcCCCCEEEEecccCCccccCeEE-EEeCCCCEEEEee----cceEE
Confidence            3689999999999953  24789999999999999999999999 555322135667 9999999999994    67899


Q ss_pred             eccccCCccccCCCCeEeeeccCCCeeEEEeeCCCCCCC
Q 036722          147 WQSFDYPSDTLLPGMKLGWDLKTGLERRVTSWKSSNDPS  185 (311)
Q Consensus       147 WqSFd~PtDtlLpgq~L~~~~~tg~~~~L~S~~s~~dps  185 (311)
                      |||||||+||+||+|+|+.+..+|.+..++||++.+|||
T Consensus        76 W~Sf~~ptdt~L~~q~l~~~~~~~~~~~~~sw~s~~dps  114 (114)
T PF01453_consen   76 WQSFDYPTDTLLPGQKLGDGNVTGKNDSLTSWSSNTDPS  114 (114)
T ss_dssp             EESTTSSS-EEEEEET--TSEEEEESTSSEEEESS----
T ss_pred             EeecCCCccEEEeccCcccCCCccccceEEeECCCCCCC
Confidence            999999999999999999876666555699999999996

Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
>cd00028 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>smart00108 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation Back     alignment and domain information
>smart00108 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>cd00028 B_lectin Bulb-type mannose-specific lectin Back     alignment and domain information
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query311
1kj1_A109 Lectin I, lecgna 1; BULB lectin, mannose, plant pr 3e-07
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 9e-07
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 2e-06
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 8e-06
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 4e-05
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 5e-05
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 2e-04
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 7e-04
>1kj1_A Lectin I, lecgna 1; BULB lectin, mannose, plant protein; HET: MAN; 2.20A {Allium sativum} SCOP: b.78.1.1 PDB: 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Length = 109 Back     alignment and structure
 Score = 47.1 bits (112), Expect = 3e-07
 Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 25  DVLTSSQSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPIN 84
           ++LT+ + L  G +L      +        +       + Y      T VW +N      
Sbjct: 2   NLLTNGEGLYAGQSLDV--EPYHFIMQEDCNL------VLYDH---STSVWASNTGILGK 50

Query: 85  DSSGLLTINRTGNPVLTSLSMGIVWSASLSKEVQQTPVILQLLDSGNLILRGEQDGDSEN 144
                  +   GN V+       +W++   +       +L L + GN+++ G       +
Sbjct: 51  KGC-KAVLQSDGNFVVYDAEGRSLWASHSVR--GNGNYVLVLQEDGNVVIYG-------S 100

Query: 145 YFWQSFDY 152
             W +  Y
Sbjct: 101 DIWSTGTY 108
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Length = 115 Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Length = 110 Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Length = 112 Back     alignment and structure
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Length = 276 Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Length = 109 Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Length = 110 Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} Length = 113 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query311
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 100.0
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 100.0
4h3o_A105 Lectin; cadmium, plant protein; 2.17A {Allium sati 99.88
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 99.86
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 99.85
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 99.83
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 99.82
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 99.79
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 99.74
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 99.73
1xd5_A112 Gastrodianin-1, antifungal protein GAFP-1; monocot 99.72
3a0c_A110 Mannose/sialic acid-binding lectin; beta-prism II, 99.7
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 99.69
1b2p_A119 Protein (lectin); mannose-binding lectin, monocot, 99.65
2dpf_A115 Curculin; sweet taste, taste modifying, plant prot 99.64
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 99.58
3mez_B113 Mannose-specific lectin 3 chain 2; heterotetramer, 99.45
3mez_A111 Mannose-specific lectin 3 chain 1; heterotetramer, 99.37
3m7h_A276 Putidacin L1; monocot mannose-binding lectin, bact 99.35
3dzw_A109 Agglutinin; lectin, mannobiose, mannose-alpha1, 3- 99.3
3r0e_B110 Lectin; carbohydrate binding, carbohydrate, sugar 99.3
3r0e_A109 Lectin; carbohydrate binding, carbohydrate, sugar 99.24
4h3o_A105 Lectin; cadmium, plant protein; 2.17A {Allium sati 99.13
1dlp_A236 Lectin scafet precursor; two-domain lectin, beta p 98.98
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Back     alignment and structure
Probab=100.00  E-value=1.6e-45  Score=339.41  Aligned_cols=233  Identities=19%  Similarity=0.211  Sum_probs=179.6

Q ss_pred             ccccccccCCCCccCCCCeEEecCCeEEEeEeCCCCCCCeEEEEEEeecCCCcEEEEcCCCCCCCCC----CceEEEecC
Q 036722           20 FSFASDVLTSSQSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDS----SGLLTINRT   95 (311)
Q Consensus        20 ~~~~~~~l~~g~~l~~~~~l~S~~g~F~lgF~~~~~~~~~~l~iw~~~~~~~~~vW~Anr~~pv~~~----~~~l~l~~~   95 (311)
                      ++++.|+|.+|++|++|++|+|++|.|+||||.++   ++||   |+  +.+ +||+|||++|+.+.    +++|+|+.+
T Consensus        10 ~~~~~~~l~~g~~l~~~~~l~S~~g~F~lgf~~~~---~~~l---y~--~~~-vvW~Anr~~p~~~~~~~~~~~l~l~~~   80 (276)
T 3m7h_A           10 NGVGTSVLPAYQTLSAGQYLLSPNQRFKLLLQGDG---NLVI---QD--NGA-TVWVANEQQPFSSTIPLRNKKAPLAFY   80 (276)
T ss_dssp             CCTTSSEECTTEEBCTTCEEECTTSSEEEEECTTS---CEEE---EE--TTE-EEEECSTTSTTEEEEECCCTTCCSEEE
T ss_pred             ccccCCEecCCCEecCCCEEEcCCCcEEEEEECCC---CeEE---EC--CCC-eEEECCCCCCcCCcccccceEEEEeCC
Confidence            45667999999999999999999999999999543   4676   76  666 99999999999764    679999999


Q ss_pred             CCeEE--ecCCCceeEeeccCcCc----CccceeeeeccCCCEEEeeccCCCCceeeeccccCCccccCCCCeEeeeccC
Q 036722           96 GNPVL--TSLSMGIVWSASLSKEV----QQTPVILQLLDSGNLILRGEQDGDSENYFWQSFDYPSDTLLPGMKLGWDLKT  169 (311)
Q Consensus        96 G~lvl--~d~~~~~vWst~~~~~~----~~~~~~~~L~d~GNlVl~~~~~~~~~~~lWqSFd~PtDtlLpgq~L~~~~~t  169 (311)
                      |+|||  .|+++.+||++++....    ..++.| +|+|+|||||++      +.+||||  ||||||||||+|+.++++
T Consensus        81 G~Lvl~~~~~~~~~vWst~~~~~~~~~~~~~~~a-~L~d~GNlVl~~------~~~lWqS--~ptdtlLpg~~~~~~l~~  151 (276)
T 3m7h_A           81 VQYGAFLDDYSRRRVWLTDNSTFTSNDQWNRTHL-VLQDDGNIVLVD------SLALWNG--TPAIPLVPGAIDSLLLAP  151 (276)
T ss_dssp             ESSSEEEEEGGGTEEEEECCCCCCCTTHHHHEEE-EECTTSCEEEEE------EEEEEES--CTTSCCCCSCTTCEEECS
T ss_pred             CcEEEEEeCCCCCEEEEeCCCcccccccCCceEE-EEeCCCCEEecC------CceeeCc--cccccccccccccccccc
Confidence            99999  78888999999976211    123566 999999999997      4699999  999999999999888888


Q ss_pred             CCeeEEEeeCCCCCCCCceEEEEEecCCCceeEEecC-CeeEEEeCCCCCceeecc-cccCCCceEEEEEEcCC-eeEEE
Q 036722          170 GLERRVTSWKSSNDPSPGDLIWKIERQGNPELVMWKG-STKFYRTGPWNGVTFSAS-SIKPNPIFNSSFVSNED-ELYYT  246 (311)
Q Consensus       170 g~~~~L~S~~s~~dps~G~y~l~~~~~~~~~l~l~~~-~~~YW~sg~w~g~~f~g~-~~~~~~~~~~~~~~~~~-e~~~~  246 (311)
                      |  +.|   ++..||++|.|+++|++++.  +++++. ..+||++|+|++..  .. .|+.+.  ++.+..+++ .+..+
T Consensus       152 g--~~L---~S~~dps~G~fsl~l~~dGn--lvLy~~~~~~yW~Sgt~~~~~--~~l~l~~dG--nLvl~d~~~~~vWsS  220 (276)
T 3m7h_A          152 G--SEL---VQGVVYGAGASKLVFQGDGN--LVAYGPNGAATWNAGTQGKGA--VRAVFQGDG--NLVVYGAGNAVLWHS  220 (276)
T ss_dssp             S--EEE---CTTCEEEETTEEEEECTTSC--EEEECTTSSEEEECCCTTTTC--CEEEECTTS--CEEEECTTSCEEEEC
T ss_pred             C--ccc---ccCCCCCCceEEEeecCCce--EEEEeCCCeEEEECCCCCCcc--EEEEEcCCC--eEEEEeCCCcEEEEe
Confidence            8  557   56789999999999999885  455654 58999999987643  11 333222  233344333 23222


Q ss_pred             EEecCCceeEEEEEecCCCeEEEEEEeCCCCceEEEEeecC
Q 036722          247 YILVDKAVFSRTLVNQTLSLRQRFVWSKATQSWELYISVPR  287 (311)
Q Consensus       247 ~~~~~~s~~~rl~Ld~dG~~l~~y~w~~~~~~W~~~w~~p~  287 (311)
                      +  ......+|++|+.|| +|++|.|   ...|..++..|.
T Consensus       221 ~--t~~~~~~rl~Ld~dG-nLvly~~---~~~Wqsf~~~P~  255 (276)
T 3m7h_A          221 H--TGGHASAVLRLQANG-SIAILDE---KPVWARFGFQPT  255 (276)
T ss_dssp             S--CTTCTTCEEEECTTS-CEEEEEE---EEEEESSSCCTT
T ss_pred             c--CCCCCCEEEEEcCCc-cEEEEcC---CCeEEccCccCC
Confidence            2  222234799999999 9999998   245766666665
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Back     alignment and structure
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding lectin, monomer, homogeneous beta- sheet; 2.00A {Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A Back     alignment and structure
>3a0c_A Mannose/sialic acid-binding lectin; beta-prism II, sugar binding protein; 2.00A {Polygonatum cyrtonema} PDB: 3a0d_A* 3a0e_A* Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>1b2p_A Protein (lectin); mannose-binding lectin, monocot, aglutinin, bluebell bulbs, carbohydrate interactions, sugar binding protein; 1.70A {Hyacinthoides hispanica} SCOP: b.78.1.1 Back     alignment and structure
>2dpf_A Curculin; sweet taste, taste modifying, plant protein; 1.50A {Curculigo latifolia} PDB: 2d04_B* 2d04_A* Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3mez_A Mannose-specific lectin 3 chain 1; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 Back     alignment and structure
>3m7h_A Putidacin L1; monocot mannose-binding lectin, bacteriocin, LLPA, pseudomon bacterial toxin, siras, antimicrobial protein; 2.20A {Pseudomonas SP} PDB: 3m7j_A* Back     alignment and structure
>3dzw_A Agglutinin; lectin, mannobiose, mannose-alpha1, 3-mannose, D sugar binding protein; HET: MAN; 1.70A {Narcissus pseudonarcissus} SCOP: b.78.1.1 PDB: 1npl_A* 1jpc_A* 1msa_A* 1niv_A* Back     alignment and structure
>3r0e_B Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>3r0e_A Lectin; carbohydrate binding, carbohydrate, sugar binding protein; 2.40A {Remusatia vivipara} Back     alignment and structure
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D* Back     alignment and structure
>1dlp_A Lectin scafet precursor; two-domain lectin, beta prism II fold, native, sugar binding protein; 3.30A {Hyacinthoides hispanica} SCOP: b.78.1.1 b.78.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 311
d1kj1a_109 b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium 7e-14
d1xd5a_112 b.78.1.1 (A:) Gastrodianin (antifungal protein) {G 2e-09
d1dlpa2120 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet 3e-09
d1jpca_108 b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galan 5e-09
d1dlpa1115 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet p 5e-06
d1b2pa_119 b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scill 3e-05
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Length = 109 Back     information, alignment and structure

class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Garlic (Allium sativum) [TaxId: 4682]

 Score = 64.6 bits (157), Expect = 7e-14
 Identities = 21/128 (16%), Positives = 43/128 (33%), Gaps = 21/128 (16%)

Query: 25  DVLTSSQSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPIN 84
           ++LT+ + L  G +L      +        +       + Y      T VW +N      
Sbjct: 2   NLLTNGEGLYAGQSLDV--EPYHFIMQEDCNL------VLYDH---STSVWASNTGILGK 50

Query: 85  DSSGLLTINRTGNPVLTSLSMGIVWSASLSKEVQQTPVILQLLDSGNLILRGEQDGDSEN 144
                  +   GN V+       +W++   +       +L L + GN+++ G       +
Sbjct: 51  KGCKA-VLQSDGNFVVYDAEGRSLWASHSVRG--NGNYVLVLQEDGNVVIYG-------S 100

Query: 145 YFWQSFDY 152
             W +  Y
Sbjct: 101 DIWSTGTY 108
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Length = 112 Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 120 Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Length = 108 Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 115 Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query311
d1xd5a_112 Gastrodianin (antifungal protein) {Gastrodia elata 99.87
d1kj1a_109 Lectin (agglutinin) {Garlic (Allium sativum) [TaxI 99.86
d1jpca_108 Lectin (agglutinin) {Snowdrop (Galanthus nivalis) 99.86
d1dlpa2120 Fetuin-binding protein Scafet precursor {Bluebell 99.7
d1b2pa_119 Lectin (agglutinin) {Bluebell (Scilla campanulata) 99.66
d1dlpa1115 Fetuin-binding protein Scafet precursor {Bluebell 99.62
d1dlpa1115 Fetuin-binding protein Scafet precursor {Bluebell 99.54
d1dlpa2120 Fetuin-binding protein Scafet precursor {Bluebell 99.3
d1b2pa_119 Lectin (agglutinin) {Bluebell (Scilla campanulata) 99.2
d1kj1a_109 Lectin (agglutinin) {Garlic (Allium sativum) [TaxI 99.14
d1jpca_108 Lectin (agglutinin) {Snowdrop (Galanthus nivalis) 99.09
d1xd5a_112 Gastrodianin (antifungal protein) {Gastrodia elata 98.92
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Gastrodianin (antifungal protein)
species: Gastrodia elata [TaxId: 91201]

Probab=99.87  E-value=4.4e-22  Score=157.23  Aligned_cols=112  Identities=20%  Similarity=0.365  Sum_probs=91.5

Q ss_pred             ccccCCCCccCCCCeEEecCCeEEEeEeCCCCCCCeEEEEEEeecCCCcEEEEcCCCCCCCCCCceEEEecCCCeEEecC
Q 036722           24 SDVLTSSQSLSDGNTLISKGGSFELGFFSPGSSENRYVGIWYKSIPVKTVVWVANRLKPINDSSGLLTINRTGNPVLTSL  103 (311)
Q Consensus        24 ~~~l~~g~~l~~~~~l~S~~g~F~lgF~~~~~~~~~~l~iw~~~~~~~~~vW~Anr~~pv~~~~~~l~l~~~G~lvl~d~  103 (311)
                      +|+|.+||.|..|++|++  |.|+|.|+.+++     |.| |.   ..++||.|++..|..  .++|.|+.||+|+|+|.
T Consensus         1 tDtL~~gq~L~~g~~l~~--g~~~l~~q~DGN-----Lvl-y~---~~~~vW~s~~~~~~~--~~~l~l~~dGnLvl~~~   67 (112)
T d1xd5a_           1 SDRLNSGHQLDTGGSLAE--GGYLFIIQNDCN-----LVL-YD---NNRAVWASGTNGKAS--GCVLKMQNDGNLVIYSG   67 (112)
T ss_dssp             CCEEETTEEECTTCEEEE--TTEEEEECTTSC-----EEE-EE---TTEEEEECCCTTSCS--SEEEEECTTSCEEEEET
T ss_pred             CCEecCCCEecCCCEEEE--CCEEEEEcCCCC-----EEE-Ec---CCcEEEEccCccCCC--CcEEEEeccccEEEEec
Confidence            489999999999999985  999999998875     444 43   478999999998743  46899999999999996


Q ss_pred             CCceeEeeccCcCcCccceeeeeccCCCEEEeeccCCCCceeeeccccCCcc
Q 036722          104 SMGIVWSASLSKEVQQTPVILQLLDSGNLILRGEQDGDSENYFWQSFDYPSD  155 (311)
Q Consensus       104 ~~~~vWst~~~~~~~~~~~~~~L~d~GNlVl~~~~~~~~~~~lWqSFd~PtD  155 (311)
                       +.++|++++.+ ......+ +|+|+|||||++.    +++++|||+.||.+
T Consensus        68 -~~~~w~s~t~~-~~~~~~l-~L~ddGNlvly~~----~~~~~W~S~t~~~n  112 (112)
T d1xd5a_          68 -SRAIWASNTNR-QNGNYYL-ILQRDRNVVIYDN----SNNAIWATHTNVGN  112 (112)
T ss_dssp             -TEEEEECCCCC-SCCCCEE-EECTTSCEEEECT----TSCEEEECCCCCCC
T ss_pred             -CCeEEEEeecc-CCCceEE-EEcCCCCEEEECC----CCcEEecCCCccCC
Confidence             55778777652 2233567 9999999999984    56799999999975
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa1 b.78.1.1 (A:1-115) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1b2pa_ b.78.1.1 (A:) Lectin (agglutinin) {Bluebell (Scilla campanulata) [TaxId: 81759]} Back     information, alignment and structure
>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]} Back     information, alignment and structure
>d1jpca_ b.78.1.1 (A:) Lectin (agglutinin) {Snowdrop (Galanthus nivalis) [TaxId: 4670]} Back     information, alignment and structure
>d1xd5a_ b.78.1.1 (A:) Gastrodianin (antifungal protein) {Gastrodia elata [TaxId: 91201]} Back     information, alignment and structure