Citrus Sinensis ID: 036725
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 392 | 2.2.26 [Sep-21-2011] | |||||||
| B9DFI7 | 616 | Probable methyltransferas | yes | no | 0.984 | 0.626 | 0.735 | 1e-178 | |
| Q94EJ6 | 621 | Probable methyltransferas | no | no | 0.984 | 0.621 | 0.669 | 1e-157 | |
| Q9SZX8 | 633 | Probable methyltransferas | no | no | 0.959 | 0.593 | 0.508 | 1e-121 | |
| Q9C884 | 639 | Probable methyltransferas | no | no | 0.926 | 0.568 | 0.495 | 1e-115 | |
| O80844 | 631 | Probable methyltransferas | no | no | 0.923 | 0.573 | 0.502 | 1e-110 | |
| Q9ZPH9 | 633 | Probable methyltransferas | no | no | 0.946 | 0.586 | 0.488 | 1e-110 | |
| Q9ZW75 | 611 | Probable methyltransferas | no | no | 0.772 | 0.495 | 0.495 | 6e-89 | |
| Q94II3 | 600 | Probable methyltransferas | no | no | 0.798 | 0.521 | 0.459 | 4e-86 | |
| Q9C6S7 | 603 | Probable methyltransferas | no | no | 0.948 | 0.616 | 0.404 | 1e-84 | |
| Q93W95 | 600 | Probable methyltransferas | no | no | 0.770 | 0.503 | 0.438 | 3e-76 |
| >sp|B9DFI7|PMT2_ARATH Probable methyltransferase PMT2 OS=Arabidopsis thaliana GN=At1g26850 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 624 bits (1608), Expect = e-178, Method: Compositional matrix adjust.
Identities = 287/390 (73%), Positives = 331/390 (84%), Gaps = 4/390 (1%)
Query: 1 MATKGNSGENRTRGSMSLFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKK-TDCSILS 59
MA K +S + +TR S+ +FIV LCCFFYILGAWQRSGFGKGDSIALE+T DC+I+
Sbjct: 1 MALKSSSADGKTRSSVQIFIVFSLCCFFYILGAWQRSGFGKGDSIALEMTNSGADCNIVP 60
Query: 60 NLNYETHHGGDAGTVDDSES-NFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHC 118
+LN+ETHH G++ V SE+ + F+PCD RY DYTPCQDQ RAM FPR +M YRERHC
Sbjct: 61 SLNFETHHAGESSLVGASEAAKVKAFEPCDGRYTDYTPCQDQRRAMTFPRDSMIYRERHC 120
Query: 119 PPPDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFP 178
P +EKLHCLIPAPKGY TPF WPKSRDYVPYANAPYK+LTVEKA+QNWIQYEG+VFRFP
Sbjct: 121 APENEKLHCLIPAPKGYVTPFSWPKSRDYVPYANAPYKALTVEKAIQNWIQYEGDVFRFP 180
Query: 179 GGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDS 238
GGGTQFP GAD YI++LASVIPM++G VRTALDTGCGVASWGAYL+ +NV MSFAPRDS
Sbjct: 181 GGGTQFPQGADKYIDQLASVIPMENGTVRTALDTGCGVASWGAYLWSRNVRAMSFAPRDS 240
Query: 239 HEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLR 298
HEAQVQFALERGVPAVIGVLGTIKLPYP+RAFDMAHCSRCLIPW ANDGMY+ME+DRVLR
Sbjct: 241 HEAQVQFALERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWGANDGMYLMEVDRVLR 300
Query: 299 PGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGETAIWQKRI 358
PGGYW+LSGP INW+ NY+AWQRP ++L+EEQRKIEE AKLLCWEKK+E GE AIWQKR+
Sbjct: 301 PGGYWILSGPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWEKKYEHGEIAIWQKRV 360
Query: 359 NYDYCQEQDTQP--TMCESTDAEDVWYSAL 386
N + C+ + P C++ D +DVWY +
Sbjct: 361 NDEACRSRQDDPRANFCKTDDTDDVWYKKM 390
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Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q94EJ6|PMTE_ARATH Probable methyltransferase PMT14 OS=Arabidopsis thaliana GN=At4g18030 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 555 bits (1431), Expect = e-157, Method: Compositional matrix adjust.
Identities = 261/390 (66%), Positives = 316/390 (81%), Gaps = 4/390 (1%)
Query: 1 MATKGNS-GENRTRGSMSLFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKKTDCS-IL 58
M +K N G NR+R ++SL +VVGLCCFFY+LGAWQ+SGFGKGDSIA+EITK+ C+ I+
Sbjct: 1 MGSKHNPPGNNRSRSTLSLLVVVGLCCFFYLLGAWQKSGFGKGDSIAMEITKQAQCTDIV 60
Query: 59 SNLNYETHHGGDAGTVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHC 118
++L++E HH ++ FKPCD + DYTPCQ+Q RAM FPR+NM YRERHC
Sbjct: 61 TDLDFEPHHN-TVKIPHKADPKPVSFKPCDVKLKDYTPCQEQDRAMKFPRENMIYRERHC 119
Query: 119 PPPDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFP 178
PP +EKL CL+PAPKGY TPF WPKSRDYV YANAP+KSLTVEKA QNW+Q++GNVF+FP
Sbjct: 120 PPDNEKLRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQNWVQFQGNVFKFP 179
Query: 179 GGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDS 238
GGGT FP GADAYIEELASVIP+ G VRTALDTGCGVASWGAY+ K+NV+TMSFAPRD+
Sbjct: 180 GGGTMFPQGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMSFAPRDN 239
Query: 239 HEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLR 298
HEAQVQFALERGVPA+I VLG+I LPYP+RAFDMA CSRCLIPW+AN+G Y+ME+DRVLR
Sbjct: 240 HEAQVQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWTANEGTYLMEVDRVLR 299
Query: 299 PGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGETAIWQKRI 358
PGGYWVLSGP INW+T ++ W R EL EQ++IE IA+ LCWEKK+EKG+ AI++K+I
Sbjct: 300 PGGYWVLSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCWEKKYEKGDIAIFRKKI 359
Query: 359 NYDYCQEQDTQPTMCESTDAEDVWYSALFT 388
N C ++ T C+ D +DVWY + T
Sbjct: 360 NDRSC-DRSTPVDTCKRKDTDDVWYKEIET 388
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SZX8|PMTH_ARATH Probable methyltransferase PMT17 OS=Arabidopsis thaliana GN=At4g10440 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 435 bits (1118), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/409 (50%), Positives = 284/409 (69%), Gaps = 33/409 (8%)
Query: 3 TKGNSGENRT----RGSMSLFI-VVGLCCFFYILGAWQRSGFGKGDSIALEITKKTDCSI 57
K NSG + R ++L + V GLC FY+LGAWQ +++ I+K C
Sbjct: 2 AKENSGHHHQTEARRKKLTLILGVSGLCILFYVLGAWQ------ANTVPSSISK-LGCET 54
Query: 58 LSN---------------LNYETHHGGDAGTVDDSESNFQEFKPCDDRYIDYTPCQDQMR 102
SN L++++H+ + + ++ + F+PC+ +YTPC+D+ R
Sbjct: 55 QSNPSSSSSSSSSSESAELDFKSHNQIE---LKETNQTIKYFEPCELSLSEYTPCEDRQR 111
Query: 103 AMLFPRKNMNYRERHCPPPDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEK 162
F R M YRERHCP DE L+CLIP P Y PF+WP+SRDY Y N P+K L+VEK
Sbjct: 112 GRRFDRNMMKYRERHCPVKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSVEK 171
Query: 163 AVQNWIQYEGNVFRFPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAY 222
AVQNWIQ EG+ FRFPGGGT FP GADAYI+++A +IP+ G +RTA+DTGCGVAS+GAY
Sbjct: 172 AVQNWIQVEGDRFRFPGGGTMFPRGADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAY 231
Query: 223 LFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPW 282
L K++++ +SFAPRD+HEAQVQFALERGVPA+IG++G+ +LPYP+RAFD+AHCSRCLIPW
Sbjct: 232 LLKRDIMAVSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPW 291
Query: 283 SANDGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCW 342
NDG+Y+ME+DRVLRPGGYW+LSGP INW+ ++ W+R ++L++EQ IE++AK LCW
Sbjct: 292 FKNDGLYLMEVDRVLRPGGYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCW 351
Query: 343 EKKHEKGETAIWQKRINYDYC---QEQDTQPTMCESTDAEDVWYSALFT 388
+K EKG+ +IWQK +N+ C ++ + P +C S +A+ WY L T
Sbjct: 352 KKVTEKGDLSIWQKPLNHIECKKLKQNNKSPPICSSDNADSAWYKDLET 400
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C884|PMTI_ARATH Probable methyltransferase PMT18 OS=Arabidopsis thaliana GN=At1g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 199/402 (49%), Positives = 263/402 (65%), Gaps = 39/402 (9%)
Query: 18 LFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKKTDCSILS------------------ 59
+ V GLC Y+LG+WQ + S E + C S
Sbjct: 21 ILCVSGLCILSYVLGSWQTNTVPTSSS---EAYSRMGCDETSTTTRAQTTQTQTNPSSDD 77
Query: 60 -----------NLNYETHHGGDAGTVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPR 108
L++E+HH + + + + F+PCD +YTPC+D+ R F R
Sbjct: 78 TSSSLSSSEPVELDFESHHKLELKITNQT---VKYFEPCDMSLSEYTPCEDRERGRRFDR 134
Query: 109 KNMNYRERHCPPPDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWI 168
M YRERHCP DE L+CLIP P Y PF+WP+SRDY Y N P+K L++EKA+QNWI
Sbjct: 135 NMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSIEKAIQNWI 194
Query: 169 QYEGNVFRFPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNV 228
Q EG FRFPGGGT FP GADAYI+++A +IP+ G +RTA+DTGCGVAS+GAYL K+++
Sbjct: 195 QVEGERFRFPGGGTMFPRGADAYIDDIARLIPLTDGAIRTAIDTGCGVASFGAYLLKRDI 254
Query: 229 ITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGM 288
+ MSFAPRD+HEAQVQFALERGVPA+IG++G+ +LPYP+RAFD+AHCSRCLIPW NDG+
Sbjct: 255 VAMSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFQNDGL 314
Query: 289 YMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEK 348
Y+ E+DRVLRPGGYW+LSGP INW+ ++ W+R ++L++EQ IE+ A+ LCW+K EK
Sbjct: 315 YLTEVDRVLRPGGYWILSGPPINWKKYWKGWERSQEDLKQEQDSIEDAARSLCWKKVTEK 374
Query: 349 GETAIWQKRINYDYCQEQD---TQPTMCESTDAED-VWYSAL 386
G+ +IWQK IN+ C + P +C +D D WY L
Sbjct: 375 GDLSIWQKPINHVECNKLKRVHKTPPLCSKSDLPDFAWYKDL 416
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O80844|PMTG_ARATH Probable methyltransferase PMT16 OS=Arabidopsis thaliana GN=At2g45750 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 398 bits (1023), Expect = e-110, Method: Compositional matrix adjust.
Identities = 190/378 (50%), Positives = 255/378 (67%), Gaps = 16/378 (4%)
Query: 20 IVVGLCCFFYILGAWQ------RSGFGKGDSIALEITKKTDCSILSNLNYETHHG-GDAG 72
+V LC Y+LG WQ R+ F D E + + + +L+++ HH D
Sbjct: 21 LVALLCIASYLLGIWQNTAVNPRAAFDDSDGTPCEGFTRPNST--KDLDFDAHHNIQDPP 78
Query: 73 TVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCPPPDEKLHCLIPAP 132
V ++ +F C ++TPC+D R++ F R+ + YR+RHCP +E L C IPAP
Sbjct: 79 PVTETAVSFPS---CAAALSEHTPCEDAKRSLKFSRERLEYRQRHCPEREEILKCRIPAP 135
Query: 133 KGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGGGTQFPHGADAYI 192
GY TPFRWP SRD +AN P+ LTVEK QNW++YE + F FPGGGT FP GADAYI
Sbjct: 136 YGYKTPFRWPASRDVAWFANVPHTELTVEKKNQNWVRYENDRFWFPGGGTMFPRGADAYI 195
Query: 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVP 252
+++ +I + G +RTA+DTGCGVAS+GAYL +N+ TMSFAPRD+HEAQVQFALERGVP
Sbjct: 196 DDIGRLIDLSDGSIRTAIDTGCGVASFGAYLLSRNITTMSFAPRDTHEAQVQFALERGVP 255
Query: 253 AVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINW 312
A+IG++ TI+LPYPSRAFD+AHCSRCLIPW NDG Y+ME+DRVLRPGGYW+LSGP INW
Sbjct: 256 AMIGIMATIRLPYPSRAFDLAHCSRCLIPWGQNDGAYLMEVDRVLRPGGYWILSGPPINW 315
Query: 313 RTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGETAIWQKRINYDYCQ---EQDTQ 369
+ ++ W+R + +L EQ +IE++A+ LCW+K ++ + AIWQK N+ C+ E
Sbjct: 316 QKRWKGWERTMDDLNAEQTQIEQVARSLCWKKVVQRDDLAIWQKPFNHIDCKKTREVLKN 375
Query: 370 PTMCE-STDAEDVWYSAL 386
P C D + WY+ +
Sbjct: 376 PEFCRHDQDPDMAWYTKM 393
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9ZPH9|PMTF_ARATH Probable methyltransferase PMT15 OS=Arabidopsis thaliana GN=At4g00750 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust.
Identities = 185/379 (48%), Positives = 252/379 (66%), Gaps = 8/379 (2%)
Query: 18 LFIVVGLCCFFYILGAWQRSGFG-KGDSIALEITKKTDCSILSN----LNYETHHGGDAG 72
+ ++ LC FY +G WQ SG G SI+ C+ LN+ + H
Sbjct: 25 VILIAILCVTFYFVGVWQHSGRGISRSSISNHELTSVPCTFPHQTTPILNFASRHTAPDL 84
Query: 73 TVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCPPPDEKLHCLIPAP 132
+++ + C + +YTPC+ R++ FPR+ + YRERHCP E + C IPAP
Sbjct: 85 PPTITDARVVQIPSCGVEFSEYTPCEFVNRSLNFPRERLIYRERHCPEKHEIVRCRIPAP 144
Query: 133 KGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGGGTQFPHGADAYI 192
GY+ PFRWP+SRD +AN P+ LTVEK QNW++YE + F FPGGGT FP GADAYI
Sbjct: 145 YGYSLPFRWPESRDVAWFANVPHTELTVEKKNQNWVRYEKDRFLFPGGGTMFPRGADAYI 204
Query: 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVP 252
+E+ +I + G +RTA+DTGCGVAS+GAYL +N++TMSFAPRD+HEAQVQFALERGVP
Sbjct: 205 DEIGRLINLKDGSIRTAIDTGCGVASFGAYLMSRNIVTMSFAPRDTHEAQVQFALERGVP 264
Query: 253 AVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINW 312
A+IGVL +I+LP+P+RAFD+AHCSRCLIPW +G Y++E+DRVLRPGGYW+LSGP INW
Sbjct: 265 AIIGVLASIRLPFPARAFDIAHCSRCLIPWGQYNGTYLIEVDRVLRPGGYWILSGPPINW 324
Query: 313 RTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGETAIWQKRINYDYCQEQDT---Q 369
+ +++ W+R +L EQ +IE +A+ LCW K ++ + A+WQK N+ +C+ +
Sbjct: 325 QRHWKGWERTRDDLNSEQSQIERVARSLCWRKLVQREDLAVWQKPTNHVHCKRNRIALGR 384
Query: 370 PTMCESTDAEDVWYSALFT 388
P C T WY+ L T
Sbjct: 385 PPFCHRTLPNQGWYTKLET 403
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9ZW75|PMTJ_ARATH Probable methyltransferase PMT19 OS=Arabidopsis thaliana GN=At2g43200 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (840), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 152/307 (49%), Positives = 202/307 (65%), Gaps = 4/307 (1%)
Query: 84 FKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCPP-PDEKLHCLIPAPKGYATPFRWP 142
F C + +Y PC D A + + RERHCP EK CL+P P GY TPF WP
Sbjct: 91 FPLCPKNFTNYLPCHDPSTARQYSIERHYRRERHCPDIAQEKFRCLVPKPTGYKTPFPWP 150
Query: 143 KSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGGGTQFPHGADAYIEELASVIPMD 202
+SR Y + N P+K L K QNW++ EG+ F FPGGGT FP G Y++ + SV+P+
Sbjct: 151 ESRKYAWFRNVPFKRLAELKKTQNWVRLEGDRFVFPGGGTSFPGGVKDYVDVILSVLPLA 210
Query: 203 SGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK 262
SG +RT LD GCGVAS+GA+L ++TMS APRD HEAQVQFALERG+PA++GVL T K
Sbjct: 211 SGSIRTVLDIGCGVASFGAFLLNYKILTMSIAPRDIHEAQVQFALERGLPAMLGVLSTYK 270
Query: 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRP 322
LPYPSR+FDM HCSRCL+ W++ DG+Y+ME+DRVLRP GYWVLSGP + R ++ +R
Sbjct: 271 LPYPSRSFDMVHCSRCLVNWTSYDGLYLMEVDRVLRPEGYWVLSGPPVASRVKFKNQKRD 330
Query: 323 IKELEEEQRKIEEIAKLLCWEKKHEKGETAIWQKRINYDYCQEQDTQ---PTMCESTDAE 379
KEL+ + K+ ++ + LCWEK E IW+K N+ C+++ P +C S+D +
Sbjct: 331 SKELQNQMEKLNDVFRRLCWEKIAESYPVVIWRKPSNHLQCRKRLKALKFPGLCSSSDPD 390
Query: 380 DVWYSAL 386
WY +
Sbjct: 391 AAWYKEM 397
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q94II3|PMTL_ARATH Probable methyltransferase PMT21 OS=Arabidopsis thaliana GN=ERD3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 318 bits (816), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 147/320 (45%), Positives = 208/320 (65%), Gaps = 7/320 (2%)
Query: 74 VDDS-ESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCPPPDEKLHCLIPAP 132
VDDS + F C Y DYTPC D + + + + ERHCPP ++ CL+P P
Sbjct: 59 VDDSLQVKSVSFSECSSDYQDYTPCTDPRKWKKYGTHRLTFMERHCPPVFDRKQCLVPPP 118
Query: 133 KGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGGGTQFPHGADAYI 192
GY P RWPKS+D Y N PY + +K+ QNW++ EG F FPGGGT FPHG AY+
Sbjct: 119 DGYKPPIRWPKSKDECWYRNVPYDWINKQKSNQNWLRKEGEKFIFPGGGTMFPHGVSAYV 178
Query: 193 EELASVIP-MDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGV 251
+ + +IP M G +RTA+DTGCGVASWG L + ++T+S APRD+HEAQVQFALERG+
Sbjct: 179 DLMQDLIPEMKDGTIRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFALERGI 238
Query: 252 PAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLIN 311
PA++G++ T +LP+PS +FDMAHCSRCLIPW+ G+Y++E+ R+LRPGG+WVLSGP +N
Sbjct: 239 PAILGIISTQRLPFPSNSFDMAHCSRCLIPWTEFGGVYLLEVHRILRPGGFWVLSGPPVN 298
Query: 312 WRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGETAIWQK---RINYD-YCQEQD 367
+ ++ W I+E K++E+ +C++ +K + A+WQK + Y+ + D
Sbjct: 299 YENRWKGWDTTIEEQRSNYEKLQELLSSMCFKMYAKKDDIAVWQKSPDNLCYNKLSNDPD 358
Query: 368 TQPTMC-ESTDAEDVWYSAL 386
P C +S + + WY+ L
Sbjct: 359 AYPPKCDDSLEPDSAWYTPL 378
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9C6S7|PMTK_ARATH Probable methyltransferase PMT20 OS=Arabidopsis thaliana GN=At1g31850 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 313 bits (802), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 158/391 (40%), Positives = 233/391 (59%), Gaps = 19/391 (4%)
Query: 2 ATKGNSGENRTRGSMSLFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKKTDCSILSNL 61
+++ G +R LFI C F + LG S K +A ++T+ T ++ S
Sbjct: 7 SSQPEKGTSRILSLTVLFI--AFCGFSFYLGGIFCSERDK--IVAKDVTRTTTKAVASP- 61
Query: 62 NYETHHGGDAGTVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCPPP 121
T + F C + DYTPC D R + +++ ERHCPP
Sbjct: 62 --------KEPTATPIQIKSVSFPECGSEFQDYTPCTDPKRWKKYGVHRLSFLERHCPPV 113
Query: 122 DEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGGG 181
EK CLIP P GY P RWPKSR+ Y N PY + +K+ Q+W++ EG+ F FPGGG
Sbjct: 114 YEKNECLIPPPDGYKPPIRWPKSREQCWYRNVPYDWINKQKSNQHWLKKEGDKFHFPGGG 173
Query: 182 TQFPHGADAYIEELASVIP-MDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHE 240
T FP G Y++ + +IP M G VRTA+DTGCGVASWG L + ++++S APRD+HE
Sbjct: 174 TMFPRGVSHYVDLMQDLIPEMKDGTVRTAIDTGCGVASWGGDLLDRGILSLSLAPRDNHE 233
Query: 241 AQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPG 300
AQVQFALERG+PA++G++ T +LP+PS AFDMAHCSRCLIPW+ G+Y++EI R++RPG
Sbjct: 234 AQVQFALERGIPAILGIISTQRLPFPSNAFDMAHCSRCLIPWTEFGGIYLLEIHRIVRPG 293
Query: 301 GYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGETAIWQKRIN- 359
G+WVLSGP +N+ ++ W +++ + + K++ + +C++K +K + A+WQK +
Sbjct: 294 GFWVLSGPPVNYNRRWRGWNTTMEDQKSDYNKLQSLLTSMCFKKYAQKDDIAVWQKLSDK 353
Query: 360 --YD-YCQEQDTQPTMC-ESTDAEDVWYSAL 386
YD + + P C +S + + WY+ L
Sbjct: 354 SCYDKIAKNMEAYPPKCDDSIEPDSAWYTPL 384
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q93W95|PMTD_ARATH Probable methyltransferase PMT13 OS=Arabidopsis thaliana GN=At4g00740 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (730), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 139/317 (43%), Positives = 193/317 (60%), Gaps = 15/317 (4%)
Query: 73 TVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCPPPDEKLHCLIPAP 132
T+ ++ + Q + C + + PC+D R R+ YRERHCP P+E CLIP P
Sbjct: 70 TLVEAGQHLQPIEYCPAEAVAHMPCEDPRRNSQLSREMNFYRERHCPLPEETPLCLIPPP 129
Query: 133 KGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGGGTQFPHGADAYI 192
GY P WP+S + +AN PY + K Q W++ EG F FPGGGT FP GA YI
Sbjct: 130 SGYKIPVPWPESLHKIWHANMPYNKIADRKGHQGWMKREGEYFTFPGGGTMFPGGAGQYI 189
Query: 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVP 252
E+LA IP++ G +RTALD GCGVAS+G L + ++ +SFAPRDSH++Q+QFALERGVP
Sbjct: 190 EKLAQYIPLNGGTLRTALDMGCGVASFGGTLLSQGILALSFAPRDSHKSQIQFALERGVP 249
Query: 253 AVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINW 312
A + +LGT +LP+P+ +FD+ HCSRCLIP++A + Y +E+DR+LRPGGY V+SGP + W
Sbjct: 250 AFVAMLGTRRLPFPAYSFDLMHCSRCLIPFTAYNATYFIEVDRLLRPGGYLVISGPPVQW 309
Query: 313 RTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGETAIWQKRINYDYC--QEQDTQP 370
+ W ++ +A+ LC+E G T IW+K + D C + +
Sbjct: 310 PKQDKEWA-----------DLQAVARALCYELIAVDGNTVIWKKPVG-DSCLPSQNEFGL 357
Query: 371 TMC-ESTDAEDVWYSAL 386
+C ES D WY L
Sbjct: 358 ELCDESVPPSDAWYFKL 374
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 392 | ||||||
| 255541011 | 613 | ATP binding protein, putative [Ricinus c | 0.979 | 0.626 | 0.839 | 0.0 | |
| 224119084 | 610 | predicted protein [Populus trichocarpa] | 0.977 | 0.627 | 0.813 | 0.0 | |
| 225456747 | 610 | PREDICTED: probable methyltransferase PM | 0.969 | 0.622 | 0.810 | 0.0 | |
| 147765301 | 605 | hypothetical protein VITISV_038569 [Viti | 0.966 | 0.626 | 0.800 | 0.0 | |
| 356508562 | 606 | PREDICTED: probable methyltransferase PM | 0.982 | 0.635 | 0.785 | 0.0 | |
| 225425706 | 618 | PREDICTED: probable methyltransferase PM | 0.984 | 0.624 | 0.784 | 0.0 | |
| 356499801 | 607 | PREDICTED: probable methyltransferase PM | 0.979 | 0.632 | 0.762 | 0.0 | |
| 357516137 | 610 | hypothetical protein MTR_8g055840 [Medic | 0.979 | 0.629 | 0.757 | 0.0 | |
| 356498262 | 607 | PREDICTED: probable methyltransferase PM | 0.979 | 0.632 | 0.762 | 0.0 | |
| 357158403 | 614 | PREDICTED: probable methyltransferase PM | 0.982 | 0.627 | 0.752 | 1e-180 |
| >gi|255541011|ref|XP_002511570.1| ATP binding protein, putative [Ricinus communis] gi|223550685|gb|EEF52172.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/386 (83%), Positives = 349/386 (90%), Gaps = 2/386 (0%)
Query: 1 MATKGNSGENRTRGSMSLFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKKTDCSILSN 60
MATKGNSG+++TR S S+FIVVGLCCFFY+LGAWQRSGFGKGDSIALEITK+T CSIL+N
Sbjct: 1 MATKGNSGDHKTRSSFSIFIVVGLCCFFYVLGAWQRSGFGKGDSIALEITKQTHCSILNN 60
Query: 61 LNYETHHGGDAGTVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCPP 120
LNY+T GDAG VD S + +EFKPCDD+ DYTPCQDQMRAM FPR NMNYRERHCPP
Sbjct: 61 LNYQT--SGDAGIVDGSGAEVKEFKPCDDKLADYTPCQDQMRAMTFPRDNMNYRERHCPP 118
Query: 121 PDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGG 180
+EKLHCLIPAPKGYA PF WPKSRDYVPYANAPYKSLTVEKA QNWIQYEGNVFRFPGG
Sbjct: 119 DEEKLHCLIPAPKGYANPFPWPKSRDYVPYANAPYKSLTVEKAAQNWIQYEGNVFRFPGG 178
Query: 181 GTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHE 240
GTQFP GAD YI +LA+VIPMD+G+VRTALDTGCGVASWGAYL KKNV+ MSFAPRDSHE
Sbjct: 179 GTQFPQGADTYINQLAAVIPMDNGLVRTALDTGCGVASWGAYLTKKNVLAMSFAPRDSHE 238
Query: 241 AQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPG 300
AQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPW +NDGMYMME+DRVLRPG
Sbjct: 239 AQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWGSNDGMYMMEVDRVLRPG 298
Query: 301 GYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGETAIWQKRINY 360
GYWVLSGP INWR NYQAWQRP +ELEEEQRKIEEIAKLLCWEKKHE GE AIWQKRIN
Sbjct: 299 GYWVLSGPPINWRNNYQAWQRPKEELEEEQRKIEEIAKLLCWEKKHEMGEIAIWQKRINS 358
Query: 361 DYCQEQDTQPTMCESTDAEDVWYSAL 386
D C+EQD QP MC+ST+ +DVWY +
Sbjct: 359 DVCREQDRQPKMCQSTNPDDVWYKKM 384
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119084|ref|XP_002317981.1| predicted protein [Populus trichocarpa] gi|222858654|gb|EEE96201.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/387 (81%), Positives = 351/387 (90%), Gaps = 4/387 (1%)
Query: 1 MATKGNSGENRTRGSM-SLFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKKTDCSILS 59
MATKGNSG+ ++ S+ S+F++ GLCCFFYILGAWQRSGFGKGD+IALEI+K+TDCS+ +
Sbjct: 1 MATKGNSGDRKSNNSLFSIFVIAGLCCFFYILGAWQRSGFGKGDNIALEISKQTDCSVFN 60
Query: 60 NLNYETHHGGDAGTVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCP 119
NLNY+ GDAG +DD + +EFKPC+D+YIDYTPCQDQMRAM FPR NM YRERHCP
Sbjct: 61 NLNYQ--KSGDAGMIDDG-AQVKEFKPCEDKYIDYTPCQDQMRAMTFPRDNMIYRERHCP 117
Query: 120 PPDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPG 179
P +EKL CLIPAPKGYA PF WPKSRDYVP+ NAPYKSLTVEKAVQNWIQYEGNVFRFPG
Sbjct: 118 PDNEKLPCLIPAPKGYANPFPWPKSRDYVPFVNAPYKSLTVEKAVQNWIQYEGNVFRFPG 177
Query: 180 GGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSH 239
GGTQFPHGADAYI ELASVIPMD+G+VRTALDTGCGVASWGAYLFKKNVI MSFAPRDSH
Sbjct: 178 GGTQFPHGADAYINELASVIPMDNGIVRTALDTGCGVASWGAYLFKKNVIAMSFAPRDSH 237
Query: 240 EAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRP 299
E+Q+QFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPW ANDGMYMMEIDRVLRP
Sbjct: 238 ESQIQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWGANDGMYMMEIDRVLRP 297
Query: 300 GGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGETAIWQKRIN 359
GGYWVLSGP INW+ NYQAWQRP +EL+EEQRKIEE+AKLLCWEKKHE GE A+WQKRIN
Sbjct: 298 GGYWVLSGPPINWKNNYQAWQRPKEELDEEQRKIEEVAKLLCWEKKHEIGEIALWQKRIN 357
Query: 360 YDYCQEQDTQPTMCESTDAEDVWYSAL 386
D+C+EQD +PTMC+ST+ +DVWY +
Sbjct: 358 NDFCREQDPKPTMCKSTNPDDVWYKKM 384
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456747|ref|XP_002275852.1| PREDICTED: probable methyltransferase PMT2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/386 (81%), Positives = 348/386 (90%), Gaps = 6/386 (1%)
Query: 1 MATKGNSGENRTRGSMSLFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKKTDCSILSN 60
MA KGN+ E++TR S+S+F+V+GLCCFFYILGAWQRSGFGKGDSIA+E+TK+TDCSILSN
Sbjct: 1 MAKKGNAAESKTRSSISIFVVLGLCCFFYILGAWQRSGFGKGDSIAIEVTKQTDCSILSN 60
Query: 61 LNYETHHGGDAGTVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCPP 120
LN+ETHH +AGT+ D +FKPCD +YIDYTPCQDQ RAM FPR++MNYRERHCPP
Sbjct: 61 LNFETHHKDEAGTIGD------QFKPCDAQYIDYTPCQDQDRAMTFPREDMNYRERHCPP 114
Query: 121 PDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGG 180
EKLHCLIPAPKGYATPF WPKSRDYVP+ANAPYK+LTVEKAVQNWIQYEGNVFRFPGG
Sbjct: 115 EGEKLHCLIPAPKGYATPFPWPKSRDYVPFANAPYKNLTVEKAVQNWIQYEGNVFRFPGG 174
Query: 181 GTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHE 240
GTQFP GADAYI+ELASVIP ++GMVRTALDTGCGVASWGAYLFKKNVI MSFAPRDSH
Sbjct: 175 GTQFPRGADAYIDELASVIPFENGMVRTALDTGCGVASWGAYLFKKNVIAMSFAPRDSHV 234
Query: 241 AQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPG 300
AQVQFALERGVPAVIGVLGTIKLPYPS AFDMAHCSRCLIPW ANDGMYMME+DRVLRPG
Sbjct: 235 AQVQFALERGVPAVIGVLGTIKLPYPSGAFDMAHCSRCLIPWGANDGMYMMEVDRVLRPG 294
Query: 301 GYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGETAIWQKRINY 360
GYWVLSGP I+W NY+AWQRP ++L+EEQ KIEEIAKLLCWEKK+EKGE AIW+KRIN+
Sbjct: 295 GYWVLSGPPISWNINYRAWQRPKEDLQEEQSKIEEIAKLLCWEKKYEKGEIAIWRKRINH 354
Query: 361 DYCQEQDTQPTMCESTDAEDVWYSAL 386
D C EQD+ T CE+T+A DVWY +
Sbjct: 355 DSCSEQDSHVTFCEATNANDVWYKQM 380
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147765301|emb|CAN60192.1| hypothetical protein VITISV_038569 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/386 (80%), Positives = 344/386 (89%), Gaps = 7/386 (1%)
Query: 1 MATKGNSGENRTRGSMSLFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKKTDCSILSN 60
MA KGN+ E++TR S+S+F+V+GLCCFFYILGAWQRSGFGKGDSIA+E+TK+TDCSILSN
Sbjct: 1 MAKKGNAAESKTRSSISIFVVLGLCCFFYILGAWQRSGFGKGDSIAIEVTKQTDCSILSN 60
Query: 61 LNYETHHGGDAGTVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCPP 120
LN+ETHH +AGT+ D +FKPCD +YIDYTPCQDQ RAM FPR++MNYRERHCPP
Sbjct: 61 LNFETHHKDEAGTIGD------QFKPCDAQYIDYTPCQDQDRAMTFPREDMNYRERHCPP 114
Query: 121 PDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGG 180
EKLHCLIPAPKGYATPF WPKSRDYVP+ANAPYK+LTVEKAVQNWIQYEGNVFRFPGG
Sbjct: 115 EGEKLHCLIPAPKGYATPFPWPKSRDYVPFANAPYKNLTVEKAVQNWIQYEGNVFRFPGG 174
Query: 181 GTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHE 240
GTQFP GADAYI+ELASVIP ++GMVRTALDTGCGV AYLFKKNVI MSFAPRDSH
Sbjct: 175 GTQFPRGADAYIDELASVIPFENGMVRTALDTGCGVIGV-AYLFKKNVIAMSFAPRDSHV 233
Query: 241 AQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPG 300
AQVQFALERGVPAVIGVLGTIKLPYPS AFDMAHCSRCLIPW ANDGMYMME+DRVLRPG
Sbjct: 234 AQVQFALERGVPAVIGVLGTIKLPYPSGAFDMAHCSRCLIPWGANDGMYMMEVDRVLRPG 293
Query: 301 GYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGETAIWQKRINY 360
GYWVLSGP I+W NY+AWQRP ++L+EEQ KIEEIAKLLCWEKK+EKGE AIW+KRIN+
Sbjct: 294 GYWVLSGPPISWNINYRAWQRPKEDLQEEQSKIEEIAKLLCWEKKYEKGEIAIWRKRINH 353
Query: 361 DYCQEQDTQPTMCESTDAEDVWYSAL 386
D C EQD+ T CE+T+A DVWY +
Sbjct: 354 DSCSEQDSHVTFCEATNANDVWYKQM 379
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356508562|ref|XP_003523024.1| PREDICTED: probable methyltransferase PMT2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/387 (78%), Positives = 345/387 (89%), Gaps = 2/387 (0%)
Query: 1 MATKGNSGENRT-RGSMSLFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKKTDCSILS 59
M TKGN G+NR R S+S+FI+VGLC FFYILG WQRSGFGKGDSIA+EITK TDCS+LS
Sbjct: 1 MVTKGNPGDNRNNRSSLSIFIIVGLCGFFYILGLWQRSGFGKGDSIAVEITKHTDCSVLS 60
Query: 60 NLNYETHHGGDAGTVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCP 119
+LNYETHH D+GT + S++ +EFKPCDDRYIDYTPC DQ RAM FPR+NM YRERHCP
Sbjct: 61 DLNYETHHDDDSGTPNSSDTQVREFKPCDDRYIDYTPCHDQARAMTFPRENMAYRERHCP 120
Query: 120 PPDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPG 179
P DEKL+CLIPAP+GY+TPF WPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPG
Sbjct: 121 PDDEKLYCLIPAPRGYSTPFSWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPG 180
Query: 180 GGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSH 239
GGTQFP GADAYI+ELASVIP+D+GMVRTALDTGCGVAS+GAYLFKKNV+ MS APRDSH
Sbjct: 181 GGTQFPKGADAYIDELASVIPLDNGMVRTALDTGCGVASFGAYLFKKNVVAMSIAPRDSH 240
Query: 240 EAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRP 299
EAQVQFALERGVPA+IGVLGTI LP+PS AFDMAHCSRCLI W ANDG YM E+DRVLRP
Sbjct: 241 EAQVQFALERGVPAIIGVLGTIMLPFPSGAFDMAHCSRCLIQWGANDGKYMKEVDRVLRP 300
Query: 300 GGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGETAIWQKRIN 359
GGYW+LSGP INW+ ++QAWQRP ELEEEQR+IE+ AKLLCWEKK+EKGE AIW+K+++
Sbjct: 301 GGYWILSGPPINWKNSFQAWQRPEDELEEEQRQIEDTAKLLCWEKKYEKGEIAIWRKKLH 360
Query: 360 YDYCQEQDTQPTMCESTDAEDVWYSAL 386
D C EQDTQP +CE+ +++DVWY +
Sbjct: 361 ND-CSEQDTQPQICETKNSDDVWYKKM 386
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425706|ref|XP_002273644.1| PREDICTED: probable methyltransferase PMT2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/389 (78%), Positives = 341/389 (87%), Gaps = 3/389 (0%)
Query: 1 MATKGNSGENRTRGSMSLFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKK-TDCSILS 59
MATK S ++RTR S+S+FIVVGLCCFFYILGAWQRSGFGKGDSIA+E+TK DCSI+S
Sbjct: 1 MATKIISADSRTRSSISIFIVVGLCCFFYILGAWQRSGFGKGDSIAVEMTKSGADCSIIS 60
Query: 60 NLNYETHHGGDAGTVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCP 119
NLN+ETHHGG+ T DDSES + FKPC +YIDYTPCQ Q RAM FPR+NM YRERHCP
Sbjct: 61 NLNFETHHGGEPVTTDDSESKPKVFKPCRSKYIDYTPCQHQKRAMTFPRENMVYRERHCP 120
Query: 120 PPDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPG 179
+EKLHCLIPAP+GY TPF WPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPG
Sbjct: 121 AENEKLHCLIPAPEGYVTPFPWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPG 180
Query: 180 GGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSH 239
GGTQFP GADAYI +LASVIP+D+G VRTALDTGCGVASWGAYL KKNVI MSFAPRD+H
Sbjct: 181 GGTQFPQGADAYINQLASVIPIDNGTVRTALDTGCGVASWGAYLLKKNVIAMSFAPRDNH 240
Query: 240 EAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRP 299
EAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPW ANDG+YMME+DRVLRP
Sbjct: 241 EAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWGANDGIYMMEVDRVLRP 300
Query: 300 GGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGETAIWQKRIN 359
GGYWVLSGP INWR NY+AW RP +EL+EEQRKIE+IA+LLCWEKK+E+GE AIWQKR+N
Sbjct: 301 GGYWVLSGPPINWRNNYKAWLRPKEELQEEQRKIEDIARLLCWEKKYEQGEIAIWQKRVN 360
Query: 360 YDYC--QEQDTQPTMCESTDAEDVWYSAL 386
C ++ D + T C++ + +D WY +
Sbjct: 361 AGACSGRQDDARTTFCKAEETDDTWYKNM 389
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499801|ref|XP_003518725.1| PREDICTED: probable methyltransferase PMT2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 642 bits (1655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 295/387 (76%), Positives = 334/387 (86%), Gaps = 3/387 (0%)
Query: 3 TKGNSGENRTRGSMSLFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKK-TDCSILSNL 61
K +S RTR + +FIVVG+CCFFYILGAWQRSGFGKGDSIALEITKK DC+++ NL
Sbjct: 2 AKPSSANGRTRSHVQIFIVVGMCCFFYILGAWQRSGFGKGDSIALEITKKGADCNVVPNL 61
Query: 62 NYETHHGGDAGTVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCPPP 121
++++HHGG+ +D+ ES + F+PCD RYIDYTPCQDQ RAM FPR+NMNYRERHCPP
Sbjct: 62 SFDSHHGGEVSKIDEFESKSKVFEPCDARYIDYTPCQDQRRAMTFPRENMNYRERHCPPE 121
Query: 122 DEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGGG 181
+EKLHC+IPAPKGY TPF WPKSRDYVPYANAPYKSLTVEKA+QNWIQYEGNVFRFPGGG
Sbjct: 122 EEKLHCMIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGG 181
Query: 182 TQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEA 241
TQFP GAD YI++LASVIP+ G VRTALDTGCGVASWGAYL+ +NVI MSFAPRDSHEA
Sbjct: 182 TQFPQGADRYIDQLASVIPIKDGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEA 241
Query: 242 QVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGG 301
QVQFALERGVPAVIGVLGTIKLPYPS AFDMAHCSRCLIPW ANDGMYMME+DRVLRPGG
Sbjct: 242 QVQFALERGVPAVIGVLGTIKLPYPSAAFDMAHCSRCLIPWGANDGMYMMEVDRVLRPGG 301
Query: 302 YWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGETAIWQKRINYD 361
YWVLSGP INW+ NY+AWQRP ++LEEEQRKIEE AKLLCWEKK E E AIWQK ++ +
Sbjct: 302 YWVLSGPPINWKINYKAWQRPKEDLEEEQRKIEETAKLLCWEKKSENSEIAIWQKTLDTE 361
Query: 362 YC--QEQDTQPTMCESTDAEDVWYSAL 386
C +++++ CESTDA DVWY +
Sbjct: 362 SCRSRQEESSVKFCESTDANDVWYKKM 388
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357516137|ref|XP_003628357.1| hypothetical protein MTR_8g055840 [Medicago truncatula] gi|355522379|gb|AET02833.1| hypothetical protein MTR_8g055840 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 293/387 (75%), Positives = 333/387 (86%), Gaps = 3/387 (0%)
Query: 3 TKGNSGENRTRGSMSLFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKKT-DCSILSNL 61
K ++ +NRTR S+ +FIVVGLCCFFYILGAWQRSGFGKGDSIALEITK +C ++ NL
Sbjct: 2 AKPSAADNRTRSSVQIFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKNNAECDVVPNL 61
Query: 62 NYETHHGGDAGTVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCPPP 121
++++HH G+ +D+S SN + FKPC+ RY DYTPCQDQ RAM FPR+NMNYRERHCPP
Sbjct: 62 SFDSHHAGEVSQIDESNSNTKVFKPCEARYTDYTPCQDQRRAMTFPRENMNYRERHCPPE 121
Query: 122 DEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGGG 181
+EKLHC+IPAPKGY TPF WPKSRDYVPYANAPYKSLTVEKA+QNWIQYEGNVFRFPGGG
Sbjct: 122 EEKLHCMIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGG 181
Query: 182 TQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEA 241
TQFP GAD YI++LASVIP++ G VRTALDTGCGVASWGAYL+ +NV+ MSFAPRDSHEA
Sbjct: 182 TQFPQGADKYIDQLASVIPINDGTVRTALDTGCGVASWGAYLWSRNVVAMSFAPRDSHEA 241
Query: 242 QVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGG 301
QVQFALERGVPAVIGV GTIKLPYPSRAFDMAHCSRCLIPW ANDGMYMME+DRVLRPGG
Sbjct: 242 QVQFALERGVPAVIGVFGTIKLPYPSRAFDMAHCSRCLIPWGANDGMYMMEVDRVLRPGG 301
Query: 302 YWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGETAIWQKRINYD 361
YWVLSGP INW+ NY+ WQRP +ELEEEQRKIEE+AK LCWEKK EK E AIWQK + +
Sbjct: 302 YWVLSGPPINWKVNYKPWQRPKEELEEEQRKIEEVAKKLCWEKKSEKAEIAIWQKMTDTE 361
Query: 362 YC--QEQDTQPTMCESTDAEDVWYSAL 386
C ++ D+ CES+D +DVWY L
Sbjct: 362 SCRSRQDDSSVEFCESSDPDDVWYKKL 388
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498262|ref|XP_003517972.1| PREDICTED: probable methyltransferase PMT2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 295/387 (76%), Positives = 333/387 (86%), Gaps = 3/387 (0%)
Query: 3 TKGNSGENRTRGSMSLFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKK-TDCSILSNL 61
K +S + RTR + +FIVVGLCCFFYILGAWQRSGFGKGDSIALEITKK DC+++ NL
Sbjct: 2 AKPSSADGRTRSHVQIFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKKGADCNVVPNL 61
Query: 62 NYETHHGGDAGTVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCPPP 121
++++HHGG+ + + ES + F+PCD RYIDYTPCQDQ RAM FPR+NMNYRERHCPP
Sbjct: 62 SFDSHHGGEVSKIGEFESKSKVFEPCDSRYIDYTPCQDQRRAMTFPRENMNYRERHCPPE 121
Query: 122 DEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGGG 181
+EKLHC+IPAPKGY TPF WPKSRDYVPYANAPYKSLTVEKA+QNWIQYEGNVFRFPGGG
Sbjct: 122 EEKLHCMIPAPKGYVTPFPWPKSRDYVPYANAPYKSLTVEKAIQNWIQYEGNVFRFPGGG 181
Query: 182 TQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEA 241
TQFP GAD YI++LASVIP+ G VRTALDTGCGVASWGAYL+ +NVI MSFAPRDSHEA
Sbjct: 182 TQFPQGADRYIDQLASVIPIKDGTVRTALDTGCGVASWGAYLWSRNVIAMSFAPRDSHEA 241
Query: 242 QVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGG 301
QVQFALERGVPAVIGVLGTIKLPYPS AFDMAHCSRCLIPW ANDGMYMME+DRVLRPGG
Sbjct: 242 QVQFALERGVPAVIGVLGTIKLPYPSAAFDMAHCSRCLIPWGANDGMYMMEVDRVLRPGG 301
Query: 302 YWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGETAIWQKRINYD 361
YWVLSGP INW+ NY+AWQR ++LEEEQRKIEE AKLLCWEKK E E AIWQK ++ +
Sbjct: 302 YWVLSGPPINWKVNYKAWQRSKEDLEEEQRKIEETAKLLCWEKKSENSEIAIWQKTVDTE 361
Query: 362 YC--QEQDTQPTMCESTDAEDVWYSAL 386
C +++D+ CESTDA DVWY +
Sbjct: 362 SCRSRQEDSSVKFCESTDANDVWYKKM 388
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357158403|ref|XP_003578117.1| PREDICTED: probable methyltransferase PMT2-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 292/388 (75%), Positives = 335/388 (86%), Gaps = 3/388 (0%)
Query: 1 MATKGNSGENRTRGSMSLFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKKTDCSILSN 60
MA KG SGENRTR ++S+ IV+G+CCFFYILGAWQ+SGFGKGDSIALEITK+TDC++L N
Sbjct: 1 MAMKGVSGENRTRTTVSICIVIGMCCFFYILGAWQKSGFGKGDSIALEITKRTDCTMLPN 60
Query: 61 LNYETHHGGDAGTVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCPP 120
L+++THH + G+ D S ++FKPC DR+ DYTPCQDQ RAM FPR+NMNYRERHCPP
Sbjct: 61 LSFDTHHSKE-GSSSDLVSPVKKFKPCPDRFTDYTPCQDQNRAMKFPRENMNYRERHCPP 119
Query: 121 PDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGG 180
EKLHCL+P PKGY PF WPKSRD+VP+AN PYKSLTVEKA+QNW+QYEGNVFRFPGG
Sbjct: 120 QKEKLHCLVPPPKGYVAPFPWPKSRDFVPFANCPYKSLTVEKAIQNWVQYEGNVFRFPGG 179
Query: 181 GTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHE 240
GTQFP GAD YI++LASVIP+ +G VRTALDTGCGVASWGAYL K+NV+ MSFAPRDSHE
Sbjct: 180 GTQFPQGADKYIDQLASVIPIANGTVRTALDTGCGVASWGAYLLKRNVLAMSFAPRDSHE 239
Query: 241 AQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPG 300
AQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPW NDG+YMME+DRVLRPG
Sbjct: 240 AQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWGINDGLYMMEVDRVLRPG 299
Query: 301 GYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGETAIWQKRINY 360
GYWVLSGP INW+ NY+ WQR ++LE EQ KIEEIA+LLCWEK EKGETAIW+KRIN
Sbjct: 300 GYWVLSGPPINWKVNYKGWQRTKEDLEAEQNKIEEIAELLCWEKVSEKGETAIWRKRINT 359
Query: 361 DYCQEQDTQPT--MCESTDAEDVWYSAL 386
+ C + +PT MCEST+A+D WY +
Sbjct: 360 ESCPSRQEEPTVQMCESTNADDAWYKKM 387
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 392 | ||||||
| TAIR|locus:2202805 | 616 | AT1G26850 [Arabidopsis thalian | 0.984 | 0.626 | 0.707 | 1.6e-159 | |
| TAIR|locus:2141035 | 621 | AT4G18030 [Arabidopsis thalian | 0.984 | 0.621 | 0.648 | 3.3e-143 | |
| TAIR|locus:2127711 | 633 | AT4G10440 [Arabidopsis thalian | 0.974 | 0.603 | 0.501 | 2.1e-109 | |
| TAIR|locus:2196651 | 639 | AT1G33170 [Arabidopsis thalian | 0.823 | 0.505 | 0.545 | 3.9e-108 | |
| TAIR|locus:2050679 | 631 | AT2G45750 [Arabidopsis thalian | 0.923 | 0.573 | 0.486 | 1.2e-99 | |
| TAIR|locus:2117728 | 633 | AT4G00750 [Arabidopsis thalian | 0.946 | 0.586 | 0.472 | 5e-99 | |
| TAIR|locus:2134756 | 600 | ERD3 "early-responsive to dehy | 0.798 | 0.521 | 0.446 | 2.5e-81 | |
| TAIR|locus:2041031 | 611 | AT2G43200 [Arabidopsis thalian | 0.790 | 0.507 | 0.476 | 6.6e-81 | |
| TAIR|locus:2034522 | 603 | AT1G31850 [Arabidopsis thalian | 0.936 | 0.608 | 0.410 | 2.9e-80 | |
| TAIR|locus:2018329 | 623 | AT1G04430 [Arabidopsis thalian | 0.908 | 0.571 | 0.405 | 2.5e-72 |
| TAIR|locus:2202805 AT1G26850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1554 (552.1 bits), Expect = 1.6e-159, P = 1.6e-159
Identities = 276/390 (70%), Positives = 317/390 (81%)
Query: 1 MATKGNSGENRTRGSMSLFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKK-TDCSILS 59
MA K +S + +TR S+ +FIV LCCFFYILGAWQRSGFGKGDSIALE+T DC+I+
Sbjct: 1 MALKSSSADGKTRSSVQIFIVFSLCCFFYILGAWQRSGFGKGDSIALEMTNSGADCNIVP 60
Query: 60 NLNYETHHGGDAGTVDDSES-NFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHC 118
+LN+ETHH G++ V SE+ + F+PCD RY DYTPCQDQ RAM FPR +M YRERHC
Sbjct: 61 SLNFETHHAGESSLVGASEAAKVKAFEPCDGRYTDYTPCQDQRRAMTFPRDSMIYRERHC 120
Query: 119 PPPDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFP 178
P +EKLHCLIPAPKGY TPF WPKSRDYVPYANAPYK+LTVEKA+QNWIQYEG+VFRFP
Sbjct: 121 APENEKLHCLIPAPKGYVTPFSWPKSRDYVPYANAPYKALTVEKAIQNWIQYEGDVFRFP 180
Query: 179 GGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDS 238
GGGTQFP GAD YI++LASVIPM++G VRTALDTGCGVASWGAYL+ +NV MSFAPRDS
Sbjct: 181 GGGTQFPQGADKYIDQLASVIPMENGTVRTALDTGCGVASWGAYLWSRNVRAMSFAPRDS 240
Query: 239 HEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLR 298
HEAQVQFALERGVPAVIGVLGTIKLPYP+RAFDMAHCSRCLIPW ANDGMY+ME+DRVLR
Sbjct: 241 HEAQVQFALERGVPAVIGVLGTIKLPYPTRAFDMAHCSRCLIPWGANDGMYLMEVDRVLR 300
Query: 299 PGGYWVLSGPLINWRTNYQAWQRPXXXXXXXXXXXXXXXXLLCWEKKHEKGETAIWQKRI 358
PGGYW+LSGP INW+ NY+AWQRP LLCWEKK+E GE AIWQKR+
Sbjct: 301 PGGYWILSGPPINWKVNYKAWQRPKEDLQEEQRKIEEAAKLLCWEKKYEHGEIAIWQKRV 360
Query: 359 NYDYCQEQDTQP--TMCESTDAEDVWYSAL 386
N + C+ + P C++ D +DVWY +
Sbjct: 361 NDEACRSRQDDPRANFCKTDDTDDVWYKKM 390
|
|
| TAIR|locus:2141035 AT4G18030 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1400 (497.9 bits), Expect = 3.3e-143, P = 3.3e-143
Identities = 253/390 (64%), Positives = 305/390 (78%)
Query: 1 MATKGNS-GENRTRGSMSLFIVVGLCCFFYILGAWQRSGFGKGDSIALEITKKTDCS-IL 58
M +K N G NR+R ++SL +VVGLCCFFY+LGAWQ+SGFGKGDSIA+EITK+ C+ I+
Sbjct: 1 MGSKHNPPGNNRSRSTLSLLVVVGLCCFFYLLGAWQKSGFGKGDSIAMEITKQAQCTDIV 60
Query: 59 SNLNYETHHGGDAGTVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHC 118
++L++E HH ++ FKPCD + DYTPCQ+Q RAM FPR+NM YRERHC
Sbjct: 61 TDLDFEPHHN-TVKIPHKADPKPVSFKPCDVKLKDYTPCQEQDRAMKFPRENMIYRERHC 119
Query: 119 PPPDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFP 178
PP +EKL CL+PAPKGY TPF WPKSRDYV YANAP+KSLTVEKA QNW+Q++GNVF+FP
Sbjct: 120 PPDNEKLRCLVPAPKGYMTPFPWPKSRDYVHYANAPFKSLTVEKAGQNWVQFQGNVFKFP 179
Query: 179 GGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDS 238
GGGT FP GADAYIEELASVIP+ G VRTALDTGCGVASWGAY+ K+NV+TMSFAPRD+
Sbjct: 180 GGGTMFPQGADAYIEELASVIPIKDGSVRTALDTGCGVASWGAYMLKRNVLTMSFAPRDN 239
Query: 239 HEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLR 298
HEAQVQFALERGVPA+I VLG+I LPYP+RAFDMA CSRCLIPW+AN+G Y+ME+DRVLR
Sbjct: 240 HEAQVQFALERGVPAIIAVLGSILLPYPARAFDMAQCSRCLIPWTANEGTYLMEVDRVLR 299
Query: 299 PGGYWVLSGPLINWRTNYQAWQRPXXXXXXXXXXXXXXXXLLCWEKKHEKGETAIWQKRI 358
PGGYWVLSGP INW+T ++ W R LCWEKK+EKG+ AI++K+I
Sbjct: 300 PGGYWVLSGPPINWKTWHKTWNRTKAELNAEQKRIEGIAESLCWEKKYEKGDIAIFRKKI 359
Query: 359 NYDYCQEQDTQPTMCESTDAEDVWYSALFT 388
N C ++ T C+ D +DVWY + T
Sbjct: 360 NDRSC-DRSTPVDTCKRKDTDDVWYKEIET 388
|
|
| TAIR|locus:2127711 AT4G10440 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1081 (385.6 bits), Expect = 2.1e-109, P = 2.1e-109
Identities = 201/401 (50%), Positives = 270/401 (67%)
Query: 4 KGNSGENRT----RGSMSLFI-VVGLCCFFYILGAWQR----SGFGK-G---DSIALEIT 50
K NSG + R ++L + V GLC FY+LGAWQ S K G S +
Sbjct: 3 KENSGHHHQTEARRKKLTLILGVSGLCILFYVLGAWQANTVPSSISKLGCETQSNPSSSS 62
Query: 51 KKTDCSILSNLNYETHHGGDAGTVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKN 110
+ S + L++++H+ + + ++ + F+PC+ +YTPC+D+ R F R
Sbjct: 63 SSSSSSESAELDFKSHNQIE---LKETNQTIKYFEPCELSLSEYTPCEDRQRGRRFDRNM 119
Query: 111 MNYRERHCPPPDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQY 170
M YRERHCP DE L+CLIP P Y PF+WP+SRDY Y N P+K L+VEKAVQNWIQ
Sbjct: 120 MKYRERHCPVKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSVEKAVQNWIQV 179
Query: 171 EGNVFRFPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVIT 230
EG+ FRFPGGGT FP GADAYI+++A +IP+ G +RTA+DTGCGVAS+GAYL K++++
Sbjct: 180 EGDRFRFPGGGTMFPRGADAYIDDIARLIPLTDGGIRTAIDTGCGVASFGAYLLKRDIMA 239
Query: 231 MSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYM 290
+SFAPRD+HEAQVQFALERGVPA+IG++G+ +LPYP+RAFD+AHCSRCLIPW NDG+Y+
Sbjct: 240 VSFAPRDTHEAQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFKNDGLYL 299
Query: 291 MEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPXXXXXXXXXXXXXXXXLLCWEKKHEKGE 350
ME+DRVLRPGGYW+LSGP INW+ ++ W+R LCW+K EKG+
Sbjct: 300 MEVDRVLRPGGYWILSGPPINWKQYWRGWERTEEDLKKEQDSIEDVAKSLCWKKVTEKGD 359
Query: 351 TAIWQKRINYDYCQ---EQDTQPTMCESTDAEDVWYSALFT 388
+IWQK +N+ C+ + + P +C S +A+ WY L T
Sbjct: 360 LSIWQKPLNHIECKKLKQNNKSPPICSSDNADSAWYKDLET 400
|
|
| TAIR|locus:2196651 AT1G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1029 (367.3 bits), Expect = 3.9e-108, Sum P(2) = 3.9e-108
Identities = 180/330 (54%), Positives = 233/330 (70%)
Query: 61 LNYETHHGGDAGTVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCPP 120
L++E+HH + + + + F+PCD +YTPC+D+ R F R M YRERHCP
Sbjct: 90 LDFESHHKLELKITNQT---VKYFEPCDMSLSEYTPCEDRERGRRFDRNMMKYRERHCPS 146
Query: 121 PDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGG 180
DE L+CLIP P Y PF+WP+SRDY Y N P+K L++EKA+QNWIQ EG FRFPGG
Sbjct: 147 KDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKELSIEKAIQNWIQVEGERFRFPGG 206
Query: 181 GTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHE 240
GT FP GADAYI+++A +IP+ G +RTA+DTGCGVAS+GAYL K++++ MSFAPRD+HE
Sbjct: 207 GTMFPRGADAYIDDIARLIPLTDGAIRTAIDTGCGVASFGAYLLKRDIVAMSFAPRDTHE 266
Query: 241 AQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPG 300
AQVQFALERGVPA+IG++G+ +LPYP+RAFD+AHCSRCLIPW NDG+Y+ E+DRVLRPG
Sbjct: 267 AQVQFALERGVPAIIGIMGSRRLPYPARAFDLAHCSRCLIPWFQNDGLYLTEVDRVLRPG 326
Query: 301 GYWVLSGPLINWRTNYQAWQRPXXXXXXXXXXXXXXXXLLCWEKKHEKGETAIWQKRINY 360
GYW+LSGP INW+ ++ W+R LCW+K EKG+ +IWQK IN+
Sbjct: 327 GYWILSGPPINWKKYWKGWERSQEDLKQEQDSIEDAARSLCWKKVTEKGDLSIWQKPINH 386
Query: 361 DYCQEQDT---QPTMCESTDAED-VWYSAL 386
C + P +C +D D WY L
Sbjct: 387 VECNKLKRVHKTPPLCSKSDLPDFAWYKDL 416
|
|
| TAIR|locus:2050679 AT2G45750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
Identities = 184/378 (48%), Positives = 243/378 (64%)
Query: 20 IVVGLCCFFYILGAWQ------RSGFGKGDSIALEITKKTDCSILSNLNYETHHG-GDAG 72
+V LC Y+LG WQ R+ F D E + + + +L+++ HH D
Sbjct: 21 LVALLCIASYLLGIWQNTAVNPRAAFDDSDGTPCEGFTRPNST--KDLDFDAHHNIQDPP 78
Query: 73 TVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCPPPDEKLHCLIPAP 132
V ++ +F C ++TPC+D R++ F R+ + YR+RHCP +E L C IPAP
Sbjct: 79 PVTETAVSFPS---CAAALSEHTPCEDAKRSLKFSRERLEYRQRHCPEREEILKCRIPAP 135
Query: 133 KGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGGGTQFPHGADAYI 192
GY TPFRWP SRD +AN P+ LTVEK QNW++YE + F FPGGGT FP GADAYI
Sbjct: 136 YGYKTPFRWPASRDVAWFANVPHTELTVEKKNQNWVRYENDRFWFPGGGTMFPRGADAYI 195
Query: 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVP 252
+++ +I + G +RTA+DTGCGVAS+GAYL +N+ TMSFAPRD+HEAQVQFALERGVP
Sbjct: 196 DDIGRLIDLSDGSIRTAIDTGCGVASFGAYLLSRNITTMSFAPRDTHEAQVQFALERGVP 255
Query: 253 AVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINW 312
A+IG++ TI+LPYPSRAFD+AHCSRCLIPW NDG Y+ME+DRVLRPGGYW+LSGP INW
Sbjct: 256 AMIGIMATIRLPYPSRAFDLAHCSRCLIPWGQNDGAYLMEVDRVLRPGGYWILSGPPINW 315
Query: 313 RTNYQAWQRPXXXXXXXXXXXXXXXXLLCWEKKHEKGETAIWQKRINYDYCQ---EQDTQ 369
+ ++ W+R LCW+K ++ + AIWQK N+ C+ E
Sbjct: 316 QKRWKGWERTMDDLNAEQTQIEQVARSLCWKKVVQRDDLAIWQKPFNHIDCKKTREVLKN 375
Query: 370 PTMCE-STDAEDVWYSAL 386
P C D + WY+ +
Sbjct: 376 PEFCRHDQDPDMAWYTKM 393
|
|
| TAIR|locus:2117728 AT4G00750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
Identities = 179/379 (47%), Positives = 242/379 (63%)
Query: 18 LFIVVGLCCFFYILGAWQRSGFG-KGDSIALEITKKTDCSILSN----LNYETHHGGDAG 72
+ ++ LC FY +G WQ SG G SI+ C+ LN+ + H
Sbjct: 25 VILIAILCVTFYFVGVWQHSGRGISRSSISNHELTSVPCTFPHQTTPILNFASRHTAPDL 84
Query: 73 TVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCPPPDEKLHCLIPAP 132
+++ + C + +YTPC+ R++ FPR+ + YRERHCP E + C IPAP
Sbjct: 85 PPTITDARVVQIPSCGVEFSEYTPCEFVNRSLNFPRERLIYRERHCPEKHEIVRCRIPAP 144
Query: 133 KGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGGGTQFPHGADAYI 192
GY+ PFRWP+SRD +AN P+ LTVEK QNW++YE + F FPGGGT FP GADAYI
Sbjct: 145 YGYSLPFRWPESRDVAWFANVPHTELTVEKKNQNWVRYEKDRFLFPGGGTMFPRGADAYI 204
Query: 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVP 252
+E+ +I + G +RTA+DTGCGVAS+GAYL +N++TMSFAPRD+HEAQVQFALERGVP
Sbjct: 205 DEIGRLINLKDGSIRTAIDTGCGVASFGAYLMSRNIVTMSFAPRDTHEAQVQFALERGVP 264
Query: 253 AVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINW 312
A+IGVL +I+LP+P+RAFD+AHCSRCLIPW +G Y++E+DRVLRPGGYW+LSGP INW
Sbjct: 265 AIIGVLASIRLPFPARAFDIAHCSRCLIPWGQYNGTYLIEVDRVLRPGGYWILSGPPINW 324
Query: 313 RTNYQAWQRPXXXXXXXXXXXXXXXXLLCWEKKHEKGETAIWQKRINYDYCQEQDT---Q 369
+ +++ W+R LCW K ++ + A+WQK N+ +C+ +
Sbjct: 325 QRHWKGWERTRDDLNSEQSQIERVARSLCWRKLVQREDLAVWQKPTNHVHCKRNRIALGR 384
Query: 370 PTMCESTDAEDVWYSALFT 388
P C T WY+ L T
Sbjct: 385 PPFCHRTLPNQGWYTKLET 403
|
|
| TAIR|locus:2134756 ERD3 "early-responsive to dehydration 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 816 (292.3 bits), Expect = 2.5e-81, P = 2.5e-81
Identities = 143/320 (44%), Positives = 200/320 (62%)
Query: 74 VDDS-ESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCPPPDEKLHCLIPAP 132
VDDS + F C Y DYTPC D + + + + ERHCPP ++ CL+P P
Sbjct: 59 VDDSLQVKSVSFSECSSDYQDYTPCTDPRKWKKYGTHRLTFMERHCPPVFDRKQCLVPPP 118
Query: 133 KGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGGGTQFPHGADAYI 192
GY P RWPKS+D Y N PY + +K+ QNW++ EG F FPGGGT FPHG AY+
Sbjct: 119 DGYKPPIRWPKSKDECWYRNVPYDWINKQKSNQNWLRKEGEKFIFPGGGTMFPHGVSAYV 178
Query: 193 EELASVIP-MDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGV 251
+ + +IP M G +RTA+DTGCGVASWG L + ++T+S APRD+HEAQVQFALERG+
Sbjct: 179 DLMQDLIPEMKDGTIRTAIDTGCGVASWGGDLLDRGILTVSLAPRDNHEAQVQFALERGI 238
Query: 252 PAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLIN 311
PA++G++ T +LP+PS +FDMAHCSRCLIPW+ G+Y++E+ R+LRPGG+WVLSGP +N
Sbjct: 239 PAILGIISTQRLPFPSNSFDMAHCSRCLIPWTEFGGVYLLEVHRILRPGGFWVLSGPPVN 298
Query: 312 WRTNYQAWQRPXXXXXXXXXXXXXXXXLLCWEKKHEKGETAIWQK---RINYD-YCQEQD 367
+ ++ W +C++ +K + A+WQK + Y+ + D
Sbjct: 299 YENRWKGWDTTIEEQRSNYEKLQELLSSMCFKMYAKKDDIAVWQKSPDNLCYNKLSNDPD 358
Query: 368 TQPTMCE-STDAEDVWYSAL 386
P C+ S + + WY+ L
Sbjct: 359 AYPPKCDDSLEPDSAWYTPL 378
|
|
| TAIR|locus:2041031 AT2G43200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
Identities = 150/315 (47%), Positives = 196/315 (62%)
Query: 77 SESNFQEFKP-CDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCPP-PDEKLHCLIPAPKG 134
S S+ + P C + +Y PC D A + + RERHCP EK CL+P P G
Sbjct: 83 SSSSLSSYFPLCPKNFTNYLPCHDPSTARQYSIERHYRRERHCPDIAQEKFRCLVPKPTG 142
Query: 135 YATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGGGTQFPHGADAYIEE 194
Y TPF WP+SR Y + N P+K L K QNW++ EG+ F FPGGGT FP G Y++
Sbjct: 143 YKTPFPWPESRKYAWFRNVPFKRLAELKKTQNWVRLEGDRFVFPGGGTSFPGGVKDYVDV 202
Query: 195 LASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAV 254
+ SV+P+ SG +RT LD GCGVAS+GA+L ++TMS APRD HEAQVQFALERG+PA+
Sbjct: 203 ILSVLPLASGSIRTVLDIGCGVASFGAFLLNYKILTMSIAPRDIHEAQVQFALERGLPAM 262
Query: 255 IGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINWRT 314
+GVL T KLPYPSR+FDM HCSRCL+ W++ DG+Y+ME+DRVLRP GYWVLSGP + R
Sbjct: 263 LGVLSTYKLPYPSRSFDMVHCSRCLVNWTSYDGLYLMEVDRVLRPEGYWVLSGPPVASRV 322
Query: 315 NYQAWQRPXXXXXXXXXXXXXXXXLLCWEKKHEKGETAIWQKRINYDYCQEQDTQ---PT 371
++ +R LCWEK E IW+K N+ C+++ P
Sbjct: 323 KFKNQKRDSKELQNQMEKLNDVFRRLCWEKIAESYPVVIWRKPSNHLQCRKRLKALKFPG 382
Query: 372 MCESTDAEDVWYSAL 386
+C S+D + WY +
Sbjct: 383 LCSSSDPDAAWYKEM 397
|
|
| TAIR|locus:2034522 AT1G31850 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
Identities = 158/385 (41%), Positives = 226/385 (58%)
Query: 9 ENRTRGSMSLFIV-VGLCCFFYILGAWQRSGFGKGDSIALEITKKTDCSILSNLNYETHH 67
E T +SL ++ + C F + LG S K +A ++T+ T ++ S T
Sbjct: 11 EKGTSRILSLTVLFIAFCGFSFYLGGIFCSERDK--IVAKDVTRTTTKAVASPKE-PT-- 65
Query: 68 GGDAGTVDDSESNFQEFKPCDDRYIDYTPCQDQMRAMLFPRKNMNYRERHCPPPDEKLHC 127
A + +F E C + DYTPC D R + +++ ERHCPP EK C
Sbjct: 66 ---ATPIQIKSVSFPE---CGSEFQDYTPCTDPKRWKKYGVHRLSFLERHCPPVYEKNEC 119
Query: 128 LIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGGGTQFPHG 187
LIP P GY P RWPKSR+ Y N PY + +K+ Q+W++ EG+ F FPGGGT FP G
Sbjct: 120 LIPPPDGYKPPIRWPKSREQCWYRNVPYDWINKQKSNQHWLKKEGDKFHFPGGGTMFPRG 179
Query: 188 ADAYIEELASVIP-MDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFA 246
Y++ + +IP M G VRTA+DTGCGVASWG L + ++++S APRD+HEAQVQFA
Sbjct: 180 VSHYVDLMQDLIPEMKDGTVRTAIDTGCGVASWGGDLLDRGILSLSLAPRDNHEAQVQFA 239
Query: 247 LERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306
LERG+PA++G++ T +LP+PS AFDMAHCSRCLIPW+ G+Y++EI R++RPGG+WVLS
Sbjct: 240 LERGIPAILGIISTQRLPFPSNAFDMAHCSRCLIPWTEFGGIYLLEIHRIVRPGGFWVLS 299
Query: 307 GPLINWRTNYQAWQRPXXXXXXXXXXXXXXXXLLCWEKKHEKGETAIWQKRIN---YD-Y 362
GP +N+ ++ W +C++K +K + A+WQK + YD
Sbjct: 300 GPPVNYNRRWRGWNTTMEDQKSDYNKLQSLLTSMCFKKYAQKDDIAVWQKLSDKSCYDKI 359
Query: 363 CQEQDTQPTMCE-STDAEDVWYSAL 386
+ + P C+ S + + WY+ L
Sbjct: 360 AKNMEAYPPKCDDSIEPDSAWYTPL 384
|
|
| TAIR|locus:2018329 AT1G04430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
Identities = 158/390 (40%), Positives = 217/390 (55%)
Query: 11 RTRGSMSLFIVVGLCCF-FYILGAWQRSGFGKGDSIALEI---TKKTDCSILS--NLNYE 64
R+ G + ++ +C ++ + G + ALE +K S LS + N +
Sbjct: 5 RSDGGLKKRLIASVCVVALFVCFLFMYYGSSSQGASALEYGRSLRKLGSSYLSGDDDNGD 64
Query: 65 THHGGDAGTVDDSESNFQEFKPCDDRYIDYTPCQD-----QMRAMLFPRKNMNYRERHCP 119
T +DS + F CDDR+ + PC D QMR L M + ERHCP
Sbjct: 65 TKQDDSVANAEDSLVVAKSFPVCDDRHSEIIPCLDRNFIYQMRLKL-DLSLMEHYERHCP 123
Query: 120 PPDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPG 179
PP+ + +CLIP P GY P +WPKSRD V AN P+ L EK+ QNW+ +G FPG
Sbjct: 124 PPERRFNCLIPPPSGYKVPIKWPKSRDEVWKANIPHTHLAKEKSDQNWMVEKGEKISFPG 183
Query: 180 GGTQFPHGADAYIEELASVIPM------DSGMVRTALDTGCGVASWGAYLFKKNVITMSF 233
GGT F +GAD YI +A+++ D G +RT LD GCGVAS+GAYL +++TMS
Sbjct: 184 GGTHFHYGADKYIASIANMLNFSNDVLNDEGRLRTVLDVGCGVASFGAYLLASDIMTMSL 243
Query: 234 APRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEI 293
AP D H+ Q+QFALERG+PA +GVLGT +LPYPSR+F+ AHCSRC I W DG+ ++E+
Sbjct: 244 APNDVHQNQIQFALERGIPAYLGVLGTKRLPYPSRSFEFAHCSRCRIDWLQRDGLLLLEL 303
Query: 294 DRVLRPGGYWVLSGP--LINWRTNYQAWQRPXXXXXXXXXXXXXXXXLLCWEKKHEKGET 351
DRVLRPGGY+ S P N + W+ +CW ++ +T
Sbjct: 304 DRVLRPGGYFAYSSPEAYAQDEENLKIWKEMSALVER-----------MCWRIAVKRNQT 352
Query: 352 AIWQKRINYD-YCQ-EQDTQPTMCESTDAE 379
+WQK ++ D Y + E TQP +C S DA+
Sbjct: 353 VVWQKPLSNDCYLEREPGTQPPLCRS-DAD 381
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B9DFI7 | PMT2_ARATH | 2, ., 1, ., 1, ., - | 0.7358 | 0.9846 | 0.6266 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 392 | |||
| pfam03141 | 506 | pfam03141, Methyltransf_29, Putative S-adenosyl-L- | 1e-178 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 9e-06 |
| >gnl|CDD|217386 pfam03141, Methyltransf_29, Putative S-adenosyl-L-methionine-dependent methyltransferase | Back alignment and domain information |
|---|
Score = 505 bits (1302), Expect = e-178
Identities = 177/302 (58%), Positives = 220/302 (72%), Gaps = 17/302 (5%)
Query: 93 DYTPCQDQMRAM--LFPRKNMNYRERHCPPPDEKLHCLIPAPKGYATPFRWPKSRDYVPY 150
DY PC D RA+ L R+ M +RERHCPP +EKL CL+P P GY TP WPKSRD V Y
Sbjct: 1 DYIPCLDNDRAIKFLLSRERMEHRERHCPPSEEKLRCLVPPPDGYKTPIPWPKSRDKVWY 60
Query: 151 ANAPYKSLTVEKAVQNWIQYEGNVFRFPGGGTQFPHGADAYIEELASVIPMD--SGMVRT 208
AN P+ L EK QNW++ EG+ FRFPGGGTQFPHGADAYI+ LA +IP G VRT
Sbjct: 61 ANVPHTKLAEEKGGQNWVKVEGDKFRFPGGGTQFPHGADAYIDFLAQMIPDIAWGGRVRT 120
Query: 209 ALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSR 268
ALD GCGVAS+GAYL ++V+TMSFAP+D HEAQVQFALERGVPA++GVLGT +LPYPSR
Sbjct: 121 ALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPSR 180
Query: 269 AFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEE 328
+FDMAHCSRCLIPW ANDG+ ++E+DRVLRPGGY+VLSGP + R ++L+E
Sbjct: 181 SFDMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVYARDE--------EDLQE 232
Query: 329 EQRKIEEIAKLLCWEKKHEKGETAIWQKRINYDYC---QEQDTQPTMCEST-DAEDVWYS 384
E + +E +AK LCW+ +KG+ AIWQK +N C +E +P +C+ + D + WY
Sbjct: 233 EWKAMEALAKSLCWKLVAKKGDIAIWQKPVNNS-CYNKREPGKKPPLCKDSDDPDAAWYV 291
Query: 385 AL 386
+
Sbjct: 292 PM 293
|
This family is a putative S-adenosyl-L-methionine (SAM)-dependent methyltransferase. Length = 506 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 9e-06
Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 210 LDTGCGVASWGAYL---FKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265
LD GCG L V + D + A +R V+G LP+
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGV-----DLSPEMLALARKRAPRKF--VVGDAEDLPF 53
Query: 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGY 302
P +FD+ S ++ + + EI RVL+PGG
Sbjct: 54 PDESFDVVVSS-LVLHHLPDPERALREIARVLKPGGK 89
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 392 | |||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 100.0 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.71 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.68 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.63 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.58 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.57 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.54 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.49 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.49 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.49 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.48 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.45 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.44 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.43 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.42 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.41 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.41 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.4 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.4 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.38 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.38 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.37 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.37 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.36 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.35 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.35 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.35 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.34 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.34 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.34 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.33 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.33 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.32 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.32 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.31 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.3 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.3 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.28 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.26 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.25 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 99.25 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.24 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.24 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.19 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.19 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.19 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.17 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.17 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.16 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.16 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.16 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.16 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.15 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.15 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.15 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.15 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.14 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.14 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.13 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.13 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.13 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.13 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.12 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.12 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.12 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.12 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.11 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.1 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.1 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.09 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.09 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.08 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.06 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.05 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.04 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.03 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.03 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.01 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.0 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.0 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.99 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.99 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.99 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.99 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.98 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.98 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.97 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.97 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.97 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.97 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.95 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.93 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 98.93 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.91 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.9 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.9 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.89 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.89 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.86 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.86 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 98.86 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.84 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.83 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.83 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.83 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.81 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.81 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.79 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.79 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.78 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.78 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.78 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.78 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.77 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.77 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.74 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.72 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.72 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.71 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.71 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.71 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.71 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.65 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.65 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.64 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.64 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.64 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.63 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.61 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.6 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.6 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.58 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.57 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.55 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.55 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.54 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.52 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.52 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.5 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.5 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.44 | |
| PLN02366 | 308 | spermidine synthase | 98.44 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.42 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.42 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.38 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.37 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.33 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.32 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.31 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.3 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.29 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.29 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.28 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.26 | |
| PLN02476 | 278 | O-methyltransferase | 98.24 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.24 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.22 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.22 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.2 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.19 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.17 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.16 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.16 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.16 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.14 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.05 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.05 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.05 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.02 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.0 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.0 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.99 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.98 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 97.94 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 97.93 | |
| PLN02823 | 336 | spermine synthase | 97.92 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.9 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 97.87 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.86 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.86 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 97.85 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.84 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.82 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.8 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.8 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.78 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.78 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.77 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.76 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.72 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.71 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.71 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.7 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.7 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.65 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.64 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.61 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.57 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.54 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.52 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.49 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.47 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 97.46 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 97.41 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.36 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.36 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.36 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.35 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.29 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 97.29 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.27 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.24 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.22 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 97.17 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 97.15 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.11 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.1 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.08 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 97.01 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.01 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.94 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.88 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.87 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.85 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.83 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.82 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 96.78 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 96.58 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 96.57 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 96.54 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 96.52 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.48 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.43 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.36 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.29 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 96.25 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.19 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.14 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 96.08 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 95.93 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 95.88 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 95.77 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 95.69 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 95.63 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 95.52 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 95.5 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.27 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 95.09 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 94.83 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 94.21 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 94.09 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 94.04 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 93.97 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 93.84 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 93.64 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 93.6 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 93.52 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 93.14 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 93.06 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 92.92 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 92.86 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 92.76 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 92.76 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 92.27 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 92.23 | |
| PRK13699 | 227 | putative methylase; Provisional | 92.18 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 91.18 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 90.98 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 90.3 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 89.17 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 88.55 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 87.93 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 87.66 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 87.48 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 86.44 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 86.42 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 86.35 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 86.21 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 86.17 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 85.24 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 85.11 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 84.89 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 84.34 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 84.24 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 82.64 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 82.17 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 81.33 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 80.65 |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-78 Score=597.63 Aligned_cols=290 Identities=62% Similarity=1.169 Sum_probs=279.3
Q ss_pred CcccCcChHHhccC--CcccccccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCcccccCCCCCchhhhhhhccceec
Q 036725 93 DYTPCQDQMRAMLF--PRKNMNYRERHCPPPDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQY 170 (392)
Q Consensus 93 ~y~pc~d~~~~~~~--~~~~~~~~~r~C~~~~~~~~c~~~~p~gY~~Pl~wp~s~~~~wy~~~p~~~l~~~k~~q~w~~~ 170 (392)
|||||+|+.+++++ +++++++||||||+.+++.+|++|+|+||+.|++||+|+|++||+|+||+.++.+|+.|+|+++
T Consensus 1 dy~PC~D~~~~~~~~~~~~~~~~rERhCP~~~~~~~CLVp~P~gYk~P~~WP~SRd~iW~~Nvph~~L~~~K~~qnWv~~ 80 (506)
T PF03141_consen 1 DYIPCLDNSRAIKFLLSRERMEHRERHCPPPEERLRCLVPPPKGYKTPIPWPKSRDYIWYANVPHTKLAEEKADQNWVRV 80 (506)
T ss_pred CCcCCCCHHHHHhhccCcccccEeeccCcCCCCCCccccCCCccCCCCCCCCcccceeeecccCchHHhhhcccccceee
Confidence 79999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEecCCCCCCCccHHHHHHHHHhhCCC--CCCCcceEEEECCcCchHHHHHhhCCcEEEeCCccChHHHHHHHHHH
Q 036725 171 EGNVFRFPGGGTQFPHGADAYIEELASVIPM--DSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALE 248 (392)
Q Consensus 171 ~~~~~~fp~~g~~f~~~~~~~i~~l~~~l~~--~~~~~~~VLDiGCG~G~~~~~L~~~~v~~vd~s~~d~~~a~~~~a~~ 248 (392)
+|+.++|||+|++|++|+.+|+++|.++++. ..+.+|++||||||+|+|+++|++++|++|++++.+.+++|+|+|.+
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 9999999999999999999999999999987 67889999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEeccccCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCchhhhhhhcccChHhHHH
Q 036725 249 RGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEE 328 (392)
Q Consensus 249 rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~~~~~~~~w~~~~e~l~~ 328 (392)
||+|+++.+.++.+||||+++||+|||++|+++|.++.+.+|.|++|+|||||||++++|+.+ ++..++...
T Consensus 161 RGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~--------~r~~~~~~~ 232 (506)
T PF03141_consen 161 RGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY--------QRTDEDLEE 232 (506)
T ss_pred cCcchhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc--------ccchHHHHH
Confidence 999999999999999999999999999999999998889999999999999999999999995 567778888
Q ss_pred HHHHHHHHHHHcCceecceeccEEEEEecCCccchhcc---CCCCCCCCC-CCCCchhhhccccccC
Q 036725 329 EQRKIEEIAKLLCWEKKHEKGETAIWQKRINYDYCQEQ---DTQPTMCES-TDAEDVWYSALFTFFH 391 (392)
Q Consensus 329 ~~~~i~~l~~~l~W~~~~~~~~~~iw~KP~~~~~c~~~---~~~~~~c~~-~~~~~~w~~~~~~c~~ 391 (392)
++..|++++++|||++++++++++|||||.+| +||.+ .+.|++|++ +|||++||++|++|++
T Consensus 233 ~~~~~~~l~~~lCW~~va~~~~~aIwqKp~~~-~Cy~~r~~~~~pplC~~~~dpd~aWY~~l~~Cit 298 (506)
T PF03141_consen 233 EWNAMEDLAKSLCWKKVAEKGDTAIWQKPTNN-SCYQKRKPGKSPPLCDSSDDPDAAWYVPLEACIT 298 (506)
T ss_pred HHHHHHHHHHHHHHHHheeeCCEEEEeccCCc-hhhhhccCCCCCCCCCCCCCCcchhhcchhhhcC
Confidence 99999999999999999999999999999998 69974 478999995 9999999999999997
|
; GO: 0008168 methyltransferase activity |
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.9e-17 Score=155.03 Aligned_cols=161 Identities=21% Similarity=0.347 Sum_probs=113.1
Q ss_pred cCCCCCCCCccccCCCCCCCCCCCCCCCCCCcccccCCCCCchhhhhhhccceeccCCeEEecCCCCCCCccHHHHHHHH
Q 036725 116 RHCPPPDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGGGTQFPHGADAYIEEL 195 (392)
Q Consensus 116 r~C~~~~~~~~c~~~~p~gY~~Pl~wp~s~~~~wy~~~p~~~l~~~k~~q~w~~~~~~~~~fp~~g~~f~~~~~~~i~~l 195 (392)
-.|++ .|+|+.+++||++.++-...+ +..|.+...+..+++.|.. .| .|....+...+.+
T Consensus 19 ~~C~~----~h~fd~a~~Gy~~ll~~~~~~-----~~~~~d~~~~~~ar~~fl~----------~g-~y~~l~~~i~~~l 78 (272)
T PRK11088 19 WICPQ----NHQFDCAKEGYVNLLPVQHKR-----SKDPGDNKEMMQARRAFLD----------AG-HYQPLRDAVANLL 78 (272)
T ss_pred EEcCC----CCCCccccCceEEeccccccC-----CCCCCcCHHHHHHHHHHHH----------CC-ChHHHHHHHHHHH
Confidence 37887 899999999999998654444 2445677788887777664 22 2333334444445
Q ss_pred HhhCCCCCCCcceEEEECCcCchHHHHHhhC-------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCC
Q 036725 196 ASVIPMDSGMVRTALDTGCGVASWGAYLFKK-------NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSR 268 (392)
Q Consensus 196 ~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~ 268 (392)
.+.++. ...+|||+|||+|.++..|++. .++++|+ ++.+++.|.++.....+.+.+...+|++++
T Consensus 79 ~~~l~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~-----s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~ 150 (272)
T PRK11088 79 AERLDE---KATALLDIGCGEGYYTHALADALPEITTMQLFGLDI-----SKVAIKYAAKRYPQVTFCVASSHRLPFADQ 150 (272)
T ss_pred HHhcCC---CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECC-----CHHHHHHHHHhCCCCeEEEeecccCCCcCC
Confidence 444442 2237999999999999988764 3577755 455677777665444445555558999999
Q ss_pred ccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCch
Q 036725 269 AFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINW 312 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~~ 312 (392)
+||+|++... + ..+.|+.|+|||||+|+++.|....
T Consensus 151 sfD~I~~~~~--~------~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 151 SLDAIIRIYA--P------CKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred ceeEEEEecC--C------CCHHHHHhhccCCCEEEEEeCCCcc
Confidence 9999998643 1 2368999999999999999877643
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-16 Score=147.46 Aligned_cols=115 Identities=26% Similarity=0.404 Sum_probs=88.8
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l 263 (392)
..+.+.+.+.+...+|. +|||||||||.++..+++. .|+++|+++.|+..+..+ +.+.+...+.++.++. .|
T Consensus 37 ~~Wr~~~i~~~~~~~g~--~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k-~~~~~~~~i~fv~~dAe~L 113 (238)
T COG2226 37 RLWRRALISLLGIKPGD--KVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREK-LKKKGVQNVEFVVGDAENL 113 (238)
T ss_pred HHHHHHHHHhhCCCCCC--EEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHH-hhccCccceEEEEechhhC
Confidence 34566666666654444 9999999999999999987 788998877655544332 2223333366666666 99
Q ss_pred CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
||+|++||+|.+++.+.++. |.+.+|+|++|||||||.+++..
T Consensus 114 Pf~D~sFD~vt~~fglrnv~-d~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 114 PFPDNSFDAVTISFGLRNVT-DIDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred CCCCCccCEEEeeehhhcCC-CHHHHHHHHHHhhcCCeEEEEEE
Confidence 99999999999999997666 99999999999999999988853
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.2e-16 Score=143.87 Aligned_cols=111 Identities=26% Similarity=0.477 Sum_probs=74.9
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCC
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYP 266 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~ 266 (392)
+.+.+.+...++. +|||+|||+|.++..++++ .|+++|+++.|+..+..+.. +.+..++.++.++. .+|++
T Consensus 37 ~~~~~~~~~~~g~--~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~-~~~~~~i~~v~~da~~lp~~ 113 (233)
T PF01209_consen 37 RKLIKLLGLRPGD--RVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLK-REGLQNIEFVQGDAEDLPFP 113 (233)
T ss_dssp SHHHHHHT--S----EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHH-HTT--SEEEEE-BTTB--S-
T ss_pred HHHHhccCCCCCC--EEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHH-hhCCCCeeEEEcCHHHhcCC
Confidence 3444444434444 8999999999999998875 68899887766655544333 33444666666665 99999
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+++||+|+|++.+..+. |....|+|+.|+|||||.+++..
T Consensus 114 d~sfD~v~~~fglrn~~-d~~~~l~E~~RVLkPGG~l~ile 153 (233)
T PF01209_consen 114 DNSFDAVTCSFGLRNFP-DRERALREMYRVLKPGGRLVILE 153 (233)
T ss_dssp TT-EEEEEEES-GGG-S-SHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceeEEEHHhhHHhhC-CHHHHHHHHHHHcCCCeEEEEee
Confidence 99999999999987766 89999999999999999998853
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.1e-15 Score=118.09 Aligned_cols=90 Identities=32% Similarity=0.508 Sum_probs=69.4
Q ss_pred EEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-cCCCCCCccceEEeccccccccc
Q 036725 210 LDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 210 LDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
||+|||+|.++..|+++ +++++|+ ++.+++.++++... ...+...+. .+|+++++||+|++..+++++ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~-----~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~-~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDI-----SEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL-E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES------HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS-S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeC-----CHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec-c
Confidence 89999999999999987 5777755 55567777765432 233444444 999999999999999998777 5
Q ss_pred ChHHHHHHHHHhccCCeEEEE
Q 036725 285 NDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 285 d~~~~L~ei~RvLkPGG~lvl 305 (392)
+...+++|+.|+|||||++++
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 889999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-14 Score=136.33 Aligned_cols=110 Identities=22% Similarity=0.242 Sum_probs=82.5
Q ss_pred HHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHH--HHcCCCcEEEEeccc-cCCCC
Q 036725 195 LASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFA--LERGVPAVIGVLGTI-KLPYP 266 (392)
Q Consensus 195 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a--~~rg~~~~~~~~~~~-~lp~~ 266 (392)
+.+.+...++ .+|||+|||+|.++..++++ .|+++|+++.++..+..+.. .....+.+.++.++. .+|++
T Consensus 65 ~~~~~~~~~~--~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~ 142 (261)
T PLN02233 65 AVSWSGAKMG--DRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFD 142 (261)
T ss_pred HHHHhCCCCC--CEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCC
Confidence 3344443344 38999999999999888764 68999887766655443321 112234555566655 89999
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+++||+|+++.+++++. ++..+++|+.|+|||||++++..
T Consensus 143 ~~sfD~V~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 143 DCYFDAITMGYGLRNVV-DRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred CCCEeEEEEecccccCC-CHHHHHHHHHHHcCcCcEEEEEE
Confidence 99999999999987665 89999999999999999999875
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.4e-14 Score=139.20 Aligned_cols=117 Identities=22% Similarity=0.369 Sum_probs=88.9
Q ss_pred HHHHHHHHhhCCCC---CCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc
Q 036725 189 DAYIEELASVIPMD---SGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI 261 (392)
Q Consensus 189 ~~~i~~l~~~l~~~---~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~ 261 (392)
...++.+++.+... .....+|||||||+|.++..|+++ .|+++|+++.++..+.. .+.+.++ +.+.++.++.
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~-~~~~~g~~~~v~~~~~D~ 177 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANA-LAAAQGLSDKVSFQVADA 177 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEEcCc
Confidence 34566666666541 122348999999999999999875 78999887765554433 3344454 3455555555
Q ss_pred -cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 262 -KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 262 -~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+|+++++||+|++..+++|+. +...+++++.|+|||||.|+++.
T Consensus 178 ~~~~~~~~~FD~V~s~~~~~h~~-d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 178 LNQPFEDGQFDLVWSMESGEHMP-DKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred ccCCCCCCCccEEEECCchhccC-CHHHHHHHHHHHcCCCcEEEEEE
Confidence 8899999999999999998886 88999999999999999999975
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4e-14 Score=130.62 Aligned_cols=105 Identities=22% Similarity=0.309 Sum_probs=84.2
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEeccccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
.+|||||||.|.++..|++. .|+++|+++..+..++. .|.+.++...+......++-...++||+|+|..+++|.+
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~-ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~- 138 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKL-HALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP- 138 (243)
T ss_pred CeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHH-hhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC-
Confidence 38999999999999999998 88999888776666554 455566543333333336655558999999999999998
Q ss_pred ChHHHHHHHHHhccCCeEEEEEcCCCchh
Q 036725 285 NDGMYMMEIDRVLRPGGYWVLSGPLINWR 313 (392)
Q Consensus 285 d~~~~L~ei~RvLkPGG~lvl~~p~~~~~ 313 (392)
+++.+++++.+.+||||.++++++..++.
T Consensus 139 dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 139 DPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred CHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 99999999999999999999999877653
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-13 Score=132.60 Aligned_cols=103 Identities=20% Similarity=0.188 Sum_probs=80.7
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCCCCCCccceEEeccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~ 282 (392)
.+|||||||+|.++..|++. .|+++|+++.++..+... +...+. ..+.+..++. .+++++++||+|++..+++|+
T Consensus 133 ~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~-~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeHv 211 (322)
T PLN02396 133 LKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLH-ADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHV 211 (322)
T ss_pred CEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHhc
Confidence 48999999999999999876 688998877655544432 222221 2445555554 788888999999999999888
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 283 SANDGMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
. ++..+++++.|+|||||.++++.....
T Consensus 212 ~-d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 212 A-NPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred C-CHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 7 899999999999999999999876553
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=131.70 Aligned_cols=112 Identities=20% Similarity=0.285 Sum_probs=84.6
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcC--CCcEEEEeccc-cC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERG--VPAVIGVLGTI-KL 263 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg--~~~~~~~~~~~-~l 263 (392)
...+.+++.+...++. +|||||||+|..+..|++. .|+++|+++. +++.|+++. .+.+.++..+. ..
T Consensus 39 ~~~~~~l~~l~l~~~~--~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~-----~~~~a~~~~~~~~~i~~~~~D~~~~ 111 (263)
T PTZ00098 39 EATTKILSDIELNENS--KVLDIGSGLGGGCKYINEKYGAHVHGVDICEK-----MVNIAKLRNSDKNKIEFEANDILKK 111 (263)
T ss_pred HHHHHHHHhCCCCCCC--EEEEEcCCCChhhHHHHhhcCCEEEEEECCHH-----HHHHHHHHcCcCCceEEEECCcccC
Confidence 3466677777655554 8999999999999888764 6888877654 444444432 23455555555 78
Q ss_pred CCCCCccceEEeccccccccc-ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 264 PYPSRAFDMAHCSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
|+++++||+|++..+++|+.. +...+++++.++|||||+|+++.+
T Consensus 112 ~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 112 DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 899999999999888877753 668999999999999999999864
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-13 Score=128.17 Aligned_cols=113 Identities=22% Similarity=0.402 Sum_probs=84.9
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPS 267 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d 267 (392)
...+.+++.++... ..+|||+|||+|.++..|++. .++++|+++ .+++.++++.....+...+...+|+++
T Consensus 29 ~~a~~l~~~l~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~-----~~l~~a~~~~~~~~~~~~d~~~~~~~~ 101 (251)
T PRK10258 29 QSADALLAMLPQRK--FTHVLDAGCGPGWMSRYWRERGSQVTALDLSP-----PMLAQARQKDAADHYLAGDIESLPLAT 101 (251)
T ss_pred HHHHHHHHhcCccC--CCeEEEeeCCCCHHHHHHHHcCCeEEEEECCH-----HHHHHHHhhCCCCCEEEcCcccCcCCC
Confidence 34456666666433 348999999999999988876 788887765 456666665432223333344789999
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++||+|+++.++ +|..++..++.++.|+|||||+++++.+..
T Consensus 102 ~~fD~V~s~~~l-~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 102 ATFDLAWSNLAV-QWCGNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred CcEEEEEECchh-hhcCCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 999999998776 677789999999999999999999987554
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-13 Score=119.78 Aligned_cols=93 Identities=30% Similarity=0.604 Sum_probs=72.8
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEeccccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
.+|||||||+|.++..|++. .++++|+++.++.. . ............+.++++||+|+|..+++|..
T Consensus 24 ~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~- 92 (161)
T PF13489_consen 24 KRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK--------R--NVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP- 92 (161)
T ss_dssp SEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH--------T--TSEEEEEECHTHHCHSSSEEEEEEESSGGGSS-
T ss_pred CEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh--------h--hhhhhhhhhhhhhccccchhhHhhHHHHhhcc-
Confidence 38999999999999999887 78888886643333 1 12222222224456789999999999997777
Q ss_pred ChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 285 NDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 285 d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++..+|+++.++|||||+++++.+..
T Consensus 93 d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 93 DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 89999999999999999999998765
|
... |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.8e-13 Score=109.00 Aligned_cols=101 Identities=26% Similarity=0.315 Sum_probs=77.5
Q ss_pred ceEEEECCcCchHHHHHhh--C--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecc-ccc
Q 036725 207 RTALDTGCGVASWGAYLFK--K--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSR-CLI 280 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~--~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~-~l~ 280 (392)
.+|||||||+|.++..+++ . +++++|+++.++..++.+.......+.+.++.++. ...-..+.||+|++.. +++
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 82 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTLH 82 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSGG
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCccc
Confidence 3899999999999999998 3 89999998877776665554444446777777776 3333356699999988 444
Q ss_pred ccc--cChHHHHHHHHHhccCCeEEEEEc
Q 036725 281 PWS--ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 281 ~~~--~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++. ++...+++++.+.|+|||+++++.
T Consensus 83 ~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 83 FLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 333 245789999999999999999975
|
... |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=121.48 Aligned_cols=116 Identities=24% Similarity=0.382 Sum_probs=86.3
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~ 262 (392)
..+.+.+++.+....+. +|||+|||+|.++..+++. .++++|+++.++..+... ....+.+.+.++.++. .
T Consensus 31 ~~~~~~~l~~l~~~~~~--~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~v~~~~~d~~~ 107 (231)
T TIGR02752 31 KKWRKDTMKRMNVQAGT--SALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQK-VKDAGLHNVELVHGNAME 107 (231)
T ss_pred HHHHHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHhcCCCceEEEEechhc
Confidence 34456666666655544 8999999999999988764 689998877655444432 2334455555555555 7
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+++++++||+|++..++++.. +...+++++.|+|||||++++..+
T Consensus 108 ~~~~~~~fD~V~~~~~l~~~~-~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 108 LPFDDNSFDYVTIGFGLRNVP-DYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCCCCCccEEEEecccccCC-CHHHHHHHHHHHcCcCeEEEEEEC
Confidence 788889999999988775544 888999999999999999998653
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=121.10 Aligned_cols=112 Identities=21% Similarity=0.257 Sum_probs=87.6
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----------CcEEEeCCccChHHHHHHHHHHcCC---CcEEEE
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----------NVITMSFAPRDSHEAQVQFALERGV---PAVIGV 257 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----------~v~~vd~s~~d~~~a~~~~a~~rg~---~~~~~~ 257 (392)
+-+.+...+....+ .++||++||||..+..+.+. +|+++|+++.++..+.. .++++++ +....+
T Consensus 88 WKd~~v~~L~p~~~--m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkq-Ra~~~~l~~~~~~~w~ 164 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKG--MKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQ-RAKKRPLKASSRVEWV 164 (296)
T ss_pred HHHHhhhccCCCCC--CeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHH-HHhhcCCCcCCceEEE
Confidence 34555555654444 48999999999999888764 68999999988777554 4444554 224555
Q ss_pred ecc-ccCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 258 LGT-IKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 258 ~~~-~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.++ .+|||++++||+.++.+.+..+. ++++.|+|++|||||||+|.+-
T Consensus 165 ~~dAE~LpFdd~s~D~yTiafGIRN~t-h~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 165 EGDAEDLPFDDDSFDAYTIAFGIRNVT-HIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred eCCcccCCCCCCcceeEEEecceecCC-CHHHHHHHHHHhcCCCcEEEEE
Confidence 544 49999999999999999888887 9999999999999999999874
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-12 Score=119.01 Aligned_cols=97 Identities=19% Similarity=0.334 Sum_probs=73.3
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
+|||+|||+|.++..|+++ .|+++|+++.++..+.. .+...++..+.....+. .+++ +++||+|+++.++++..+
T Consensus 33 ~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~-~~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~ 110 (197)
T PRK11207 33 KTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLER-IKAAENLDNLHTAVVDLNNLTF-DGEYDFILSTVVLMFLEA 110 (197)
T ss_pred cEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHHHcCCCcceEEecChhhCCc-CCCcCEEEEecchhhCCH
Confidence 8999999999999999987 78999998876665443 34445555444444444 5566 467999999988755442
Q ss_pred -ChHHHHHHHHHhccCCeEEEEE
Q 036725 285 -NDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 285 -d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
+...++.++.|+|||||++++.
T Consensus 111 ~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 111 KTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEE
Confidence 3478999999999999997653
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-12 Score=124.88 Aligned_cols=102 Identities=20% Similarity=0.124 Sum_probs=78.6
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cC-CCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KL-PYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~l-p~~d~sFDlV~~~~~l~~ 281 (392)
.+|||+|||+|.++..|+++ .|+++|+++.++..++. .+.+.++ +.+.++.++. .+ ++++++||+|++..++++
T Consensus 46 ~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~-~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl~~ 124 (255)
T PRK11036 46 LRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQ-AAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEW 124 (255)
T ss_pred CEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHHHh
Confidence 48999999999999999987 78999888766655443 3334444 3455555554 44 466789999999988865
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 282 WSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 282 ~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+. ++..++.++.|+|||||++++...+.
T Consensus 125 ~~-~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 125 VA-DPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred hC-CHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 54 88999999999999999999865443
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-12 Score=123.40 Aligned_cols=106 Identities=22% Similarity=0.333 Sum_probs=79.6
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYP 266 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~ 266 (392)
...+++.+....+ .+|||||||+|.++..|+++ .++++|+++ .+++.|+++++ .++.++. .++ +
T Consensus 18 ~~~ll~~l~~~~~--~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~-----~~~~~a~~~~~---~~~~~d~~~~~-~ 86 (255)
T PRK14103 18 FYDLLARVGAERA--RRVVDLGCGPGNLTRYLARRWPGAVIEALDSSP-----EMVAAARERGV---DARTGDVRDWK-P 86 (255)
T ss_pred HHHHHHhCCCCCC--CEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCH-----HHHHHHHhcCC---cEEEcChhhCC-C
Confidence 4556666664444 38999999999999999875 688887765 45666666553 2334444 554 5
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+++||+|+++.++++. +++..+++++.++|||||++++..+.
T Consensus 87 ~~~fD~v~~~~~l~~~-~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 87 KPDTDVVVSNAALQWV-PEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred CCCceEEEEehhhhhC-CCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 7899999999888554 58899999999999999999997643
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.4e-12 Score=126.49 Aligned_cols=111 Identities=21% Similarity=0.167 Sum_probs=80.3
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcC-CCcEEEEeccc-cCCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERG-VPAVIGVLGTI-KLPYP 266 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg-~~~~~~~~~~~-~lp~~ 266 (392)
.+.+...++...+ ++|||||||+|.++..+++. .|+|+|.++.++....... ...+ ...+.++..+. .+|+
T Consensus 111 ~~~l~~~l~~l~g--~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~-~~~~~~~~i~~~~~d~e~lp~- 186 (322)
T PRK15068 111 WDRVLPHLSPLKG--RTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVR-KLLGNDQRAHLLPLGIEQLPA- 186 (322)
T ss_pred HHHHHHhhCCCCC--CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHH-HhcCCCCCeEEEeCCHHHCCC-
Confidence 3455555553334 48999999999999999876 4899988775543321111 1111 23444555554 7888
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+++||+|+|..+++|.. ++..+|++++++|||||.++++.
T Consensus 187 ~~~FD~V~s~~vl~H~~-dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 187 LKAFDTVFSMGVLYHRR-SPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred cCCcCEEEECChhhccC-CHHHHHHHHHHhcCCCcEEEEEE
Confidence 88999999998987765 88999999999999999999864
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-12 Score=116.74 Aligned_cols=97 Identities=18% Similarity=0.283 Sum_probs=71.3
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEeccccccccc-
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSA- 284 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~- 284 (392)
+|||+|||+|.++..|+++ .|+++|+++.++..+.. .+.+.+++......+....++ +++||+|+++.+++++..
T Consensus 33 ~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~-~~~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~~ 110 (195)
T TIGR00477 33 KTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLD-MKARENLPLRTDAYDINAAAL-NEDYDFIFSTVVFMFLQAG 110 (195)
T ss_pred cEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHhCCCceeEeccchhccc-cCCCCEEEEecccccCCHH
Confidence 8999999999999999987 79999998766655443 444556553322333224455 467999999988866643
Q ss_pred ChHHHHHHHHHhccCCeEEEEE
Q 036725 285 NDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 285 d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
+...+++++.|+|||||++++.
T Consensus 111 ~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 111 RVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred HHHHHHHHHHHHhCCCcEEEEE
Confidence 3478999999999999996654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.3e-12 Score=112.66 Aligned_cols=100 Identities=27% Similarity=0.409 Sum_probs=79.1
Q ss_pred ceEEEECCcCchHHHHHhh-C----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC--CCCCccceEEeccc
Q 036725 207 RTALDTGCGVASWGAYLFK-K----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP--YPSRAFDMAHCSRC 278 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~-~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp--~~d~sFDlV~~~~~ 278 (392)
.+|||+|||+|.++..|++ . +++++|+++.++..+.. .+++.+.+++.+..++. +++ ++ +.||+|++..+
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~-~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~~ 82 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKK-RAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNGV 82 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH-HHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEEST
T ss_pred CEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhc-ccccccccccceEEeehhccccccC-CCeeEEEEcCc
Confidence 4899999999999999993 2 79999888766655443 44556777777777776 666 55 89999999988
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 279 LIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 279 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+++.. +...+++++.++|++||.+++..+.
T Consensus 83 l~~~~-~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 83 LHHFP-DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GGGTS-HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhcc-CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 85554 8889999999999999999998654
|
... |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.7e-12 Score=116.83 Aligned_cols=98 Identities=26% Similarity=0.354 Sum_probs=76.4
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~ 281 (392)
.+|||+|||+|.++..+++. .++++|+++ .+++.++++..+.+.++.++. .+++++++||+|++..++++
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~-----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~ 110 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISA-----GMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQW 110 (240)
T ss_pred CeEEEECCCccHHHHHHHHhCCCCcEEEEeChH-----HHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhh
Confidence 48999999999999999876 468886654 455555554433444455554 78888999999999988854
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 282 WSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 282 ~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
..++..++.++.++|+|||.+++..+..
T Consensus 111 -~~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 111 -CDDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred -ccCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 4588999999999999999999987655
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-12 Score=115.07 Aligned_cols=107 Identities=28% Similarity=0.377 Sum_probs=81.7
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC-CCCCCcc
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL-PYPSRAF 270 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l-p~~d~sF 270 (392)
+.|+++++ +++ +|||+|||.|.+..+|.+. ++.+..+ +++.+.+..+.++|++.+....+. .| .|++++|
T Consensus 5 ~~I~~~I~--pgs--rVLDLGCGdG~LL~~L~~~k~v~g~Gv---Eid~~~v~~cv~rGv~Viq~Dld~-gL~~f~d~sF 76 (193)
T PF07021_consen 5 QIIAEWIE--PGS--RVLDLGCGDGELLAYLKDEKQVDGYGV---EIDPDNVAACVARGVSVIQGDLDE-GLADFPDQSF 76 (193)
T ss_pred HHHHHHcC--CCC--EEEecCCCchHHHHHHHHhcCCeEEEE---ecCHHHHHHHHHcCCCEEECCHHH-hHhhCCCCCc
Confidence 44566665 444 8999999999999999985 5554444 556667888889998765333333 44 4899999
Q ss_pred ceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 271 DMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 271 DlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
|.|+++.++.+.. +++.+|.|+.|+ |...+++-|+..
T Consensus 77 D~VIlsqtLQ~~~-~P~~vL~EmlRV---gr~~IVsFPNFg 113 (193)
T PF07021_consen 77 DYVILSQTLQAVR-RPDEVLEEMLRV---GRRAIVSFPNFG 113 (193)
T ss_pred cEEehHhHHHhHh-HHHHHHHHHHHh---cCeEEEEecChH
Confidence 9999999997776 899999999777 668888888773
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.5e-12 Score=122.61 Aligned_cols=110 Identities=17% Similarity=0.089 Sum_probs=77.3
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHc-C-CCcEEEEeccc-cCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALER-G-VPAVIGVLGTI-KLPY 265 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~r-g-~~~~~~~~~~~-~lp~ 265 (392)
.+.+...+....+ ++|||||||+|.++..++.. .|+|+|.++.++... +.+++. + ...+.+...+. .+|.
T Consensus 110 ~~~~l~~l~~~~g--~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~--~~~~~~~~~~~~v~~~~~~ie~lp~ 185 (314)
T TIGR00452 110 WDRVLPHLSPLKG--RTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQF--EAVRKLLDNDKRAILEPLGIEQLHE 185 (314)
T ss_pred HHHHHHhcCCCCC--CEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHH--HHHHHHhccCCCeEEEECCHHHCCC
Confidence 3455555554444 48999999999999888776 478888776554332 122221 1 12333333333 6775
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. .+||+|+|..+++|+. ++..+|++++|+|||||.|++..
T Consensus 186 ~-~~FD~V~s~gvL~H~~-dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 186 L-YAFDTVFSMGVLYHRK-SPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred C-CCcCEEEEcchhhccC-CHHHHHHHHHHhcCCCCEEEEEE
Confidence 3 5899999999998876 88999999999999999999864
|
Known examples to date are restricted to the proteobacteria. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.9e-12 Score=118.29 Aligned_cols=86 Identities=22% Similarity=0.247 Sum_probs=67.6
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
.+|||||||+|.++..|+++ .++++|+++. |++.|+++. . ..+.+...+|+++++||+|+++.+++++.
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~-----Ml~~a~~~~-~--~~~~d~~~lp~~d~sfD~v~~~~~l~~~~ 124 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVFKYYVVALDYAEN-----MLKMNLVAD-D--KVVGSFEALPFRDKSFDVVMSSFALHASD 124 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHH-----HHHHHHhcc-c--eEEechhhCCCCCCCEEEEEecChhhccC
Confidence 38999999999999999876 6788866554 555555543 1 22334448999999999999999886655
Q ss_pred cChHHHHHHHHHhccCCe
Q 036725 284 ANDGMYMMEIDRVLRPGG 301 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG 301 (392)
+++.+++|+.|+|||.+
T Consensus 125 -d~~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 125 -NIEKVIAEFTRVSRKQV 141 (226)
T ss_pred -CHHHHHHHHHHHhcCce
Confidence 89999999999999954
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.4e-12 Score=117.41 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=72.4
Q ss_pred ceEEEECCcCchHHHHHhhC------CcEEEeCCccChHHHHHHHHHHcC-CCcEEEEeccc-cCCCCCCccceEEeccc
Q 036725 207 RTALDTGCGVASWGAYLFKK------NVITMSFAPRDSHEAQVQFALERG-VPAVIGVLGTI-KLPYPSRAFDMAHCSRC 278 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~------~v~~vd~s~~d~~~a~~~~a~~rg-~~~~~~~~~~~-~lp~~d~sFDlV~~~~~ 278 (392)
.+|||+|||+|.++..++++ .++++|+++.++..+..+. .+.+ ...+.++.++. .++++ .+|+|++..+
T Consensus 55 ~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~~ 131 (239)
T TIGR00740 55 SNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHI-AAYHSEIPVEILCNDIRHVEIK--NASMVILNFT 131 (239)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHH-HhcCCCCCeEEEECChhhCCCC--CCCEEeeecc
Confidence 38999999999999888763 5899988776655544332 2222 22345555555 66664 4899999988
Q ss_pred cccccc-ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 279 LIPWSA-NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 279 l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++++.+ +...+++++.|+|||||.|+++.+
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 866642 347899999999999999999864
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=115.13 Aligned_cols=113 Identities=29% Similarity=0.411 Sum_probs=85.3
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHc---CCCcEEEEecc
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALER---GVPAVIGVLGT 260 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~r---g~~~~~~~~~~ 260 (392)
..+.+.+.+.+....+. +|||+|||+|.++..+++. .++++|+++..+ +.++++ ..+.+.+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~-----~~a~~~~~~~~~~~~~~~~d 77 (241)
T PRK08317 5 RRYRARTFELLAVQPGD--RVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAML-----ALAKERAAGLGPNVEFVRGD 77 (241)
T ss_pred HHHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHH-----HHHHHHhhCCCCceEEEecc
Confidence 45566677777655544 8999999999999988764 588888766433 333332 23445555555
Q ss_pred c-cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 261 I-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 261 ~-~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
. .+++++++||+|++..+++++. ++..+++++.++|||||++++..+.
T Consensus 78 ~~~~~~~~~~~D~v~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 78 ADGLPFPDGSFDAVRSDRVLQHLE-DPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred cccCCCCCCCceEEEEechhhccC-CHHHHHHHHHHHhcCCcEEEEEecC
Confidence 4 6788889999999999887766 8899999999999999999997653
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-12 Score=122.14 Aligned_cols=120 Identities=26% Similarity=0.436 Sum_probs=81.7
Q ss_pred ecCCCCCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHH----Hc
Q 036725 177 FPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFAL----ER 249 (392)
Q Consensus 177 fp~~g~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~----~r 249 (392)
|+.+...+.......++.+.+.+...+|. +|||||||.|.++.+++++ +|+++++ ++.|.+.++ ++
T Consensus 36 ~~~~~~~Le~AQ~~k~~~~~~~~~l~~G~--~vLDiGcGwG~~~~~~a~~~g~~v~gitl-----S~~Q~~~a~~~~~~~ 108 (273)
T PF02353_consen 36 FDEGDDTLEEAQERKLDLLCEKLGLKPGD--RVLDIGCGWGGLAIYAAERYGCHVTGITL-----SEEQAEYARERIREA 108 (273)
T ss_dssp -SSTT--HHHHHHHHHHHHHTTTT--TT---EEEEES-TTSHHHHHHHHHH--EEEEEES------HHHHHHHHHHHHCS
T ss_pred cCCchhhHHHHHHHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHcCcEEEEEEC-----CHHHHHHHHHHHHhc
Confidence 44444334444556788888998887776 9999999999999999998 5666655 445555554 45
Q ss_pred CCC-cEEEEeccc-cCCCCCCccceEEeccccccccc-ChHHHHHHHHHhccCCeEEEEE
Q 036725 250 GVP-AVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 250 g~~-~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
|++ .+.+...+. +++ .+||.|++..+++|... +...+++++.++|||||.+++.
T Consensus 109 gl~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 109 GLEDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp TSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred CCCCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 654 345555554 443 38999999999999863 4589999999999999999874
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-12 Score=119.47 Aligned_cols=109 Identities=22% Similarity=0.375 Sum_probs=80.2
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
....++..+....+ .+|||||||+|.++..++++ .++++|+++. +++.++++. +.+.+..++. .++
T Consensus 19 ~~~~ll~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~-----~i~~a~~~~-~~~~~~~~d~~~~~- 89 (258)
T PRK01683 19 PARDLLARVPLENP--RYVVDLGCGPGNSTELLVERWPAARITGIDSSPA-----MLAEARSRL-PDCQFVEADIASWQ- 89 (258)
T ss_pred HHHHHHhhCCCcCC--CEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHH-----HHHHHHHhC-CCCeEEECchhccC-
Confidence 34455556654444 38999999999999999874 6888877654 555565553 3344455554 443
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
++++||+|+++.+++ |..+...+++++.++|||||.+++..+.
T Consensus 90 ~~~~fD~v~~~~~l~-~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 90 PPQALDLIFANASLQ-WLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred CCCCccEEEEccChh-hCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 467999999998884 5558899999999999999999997654
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.2e-12 Score=128.64 Aligned_cols=112 Identities=21% Similarity=0.355 Sum_probs=81.6
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPS 267 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d 267 (392)
.+.+++.+....+ .+|||||||+|.++..|++. .++++|+++.++..+..+ +.... ..+.+...+. .+++++
T Consensus 255 te~l~~~~~~~~~--~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~-~~~~~-~~v~~~~~d~~~~~~~~ 330 (475)
T PLN02336 255 TKEFVDKLDLKPG--QKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALER-AIGRK-CSVEFEVADCTKKTYPD 330 (475)
T ss_pred HHHHHHhcCCCCC--CEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHH-hhcCC-CceEEEEcCcccCCCCC
Confidence 3445555554333 48999999999999888875 688998876544433221 11111 2344555554 778888
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++||+|+|..+++|+. ++..+++++.|+|||||.+++..+
T Consensus 331 ~~fD~I~s~~~l~h~~-d~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 331 NSFDVIYSRDTILHIQ-DKPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred CCEEEEEECCcccccC-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 9999999999987776 889999999999999999999754
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.3e-13 Score=108.02 Aligned_cols=93 Identities=23% Similarity=0.301 Sum_probs=56.6
Q ss_pred EEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC--CCCCCccceEEecccccccc
Q 036725 210 LDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL--PYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 210 LDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l--p~~d~sFDlV~~~~~l~~~~ 283 (392)
||||||+|.++..++++ +++++|+++.++..+..+................... ....++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999888776 7899999998875544444433322222222222222 2223699999999999777
Q ss_pred cChHHHHHHHHHhccCCeEE
Q 036725 284 ANDGMYMMEIDRVLRPGGYW 303 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~l 303 (392)
++...+++.+.++|||||.|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 58899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.3e-11 Score=109.40 Aligned_cols=114 Identities=21% Similarity=0.188 Sum_probs=83.7
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~ 281 (392)
.+|||+|||+|..+..++.+ .|+++|.++.++..+. +.+++.+++.+.+..++. .++. +++||+|++..
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~-~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~---- 120 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLR-EVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA---- 120 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc----
Confidence 48999999999999888753 7999988876665544 344556666566666665 6665 77999999864
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEcCCCchhhhhhhcccChHhHHHHHHHHHHHHHHcCceec
Q 036725 282 WSANDGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKK 345 (392)
Q Consensus 282 ~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~~~~~~~~w~~~~e~l~~~~~~i~~l~~~l~W~~~ 345 (392)
+ .+...+++++.++|||||++++..+.. ....++++++.+.|...
T Consensus 121 ~-~~~~~~l~~~~~~LkpGG~lv~~~~~~------------------~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 121 V-ASLSDLVELCLPLLKPGGRFLALKGRD------------------PEEEIAELPKALGGKVE 165 (187)
T ss_pred c-cCHHHHHHHHHHhcCCCeEEEEEeCCC------------------hHHHHHHHHHhcCceEe
Confidence 2 266789999999999999999975432 11336677777788643
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.2e-12 Score=119.58 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=73.5
Q ss_pred ceEEEECCcCchHHHHHhh------CCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccc
Q 036725 207 RTALDTGCGVASWGAYLFK------KNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~------~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l 279 (392)
.+|||||||+|..+..+++ ..++++|+++.++..+..+.........+.++.++. .+|++ .+|+|+++.++
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~~l 135 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNFTL 135 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhhHH
Confidence 3899999999999888775 179999888877666655443322223455555555 66664 48999999888
Q ss_pred cccccC-hHHHHHHHHHhccCCeEEEEEc
Q 036725 280 IPWSAN-DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 280 ~~~~~d-~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++..++ ...+++++.|+|||||.|+++.
T Consensus 136 ~~l~~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 136 QFLEPSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 666532 2689999999999999999975
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.8e-12 Score=118.43 Aligned_cols=127 Identities=19% Similarity=0.288 Sum_probs=93.9
Q ss_pred EecCCCCCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC
Q 036725 176 RFPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP 252 (392)
Q Consensus 176 ~fp~~g~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~ 252 (392)
.|++....+.......++.+.+.+.+.+|. +|||||||.|.++.+++++ +|+|+++|+.....++ +.++++|++
T Consensus 45 yf~~~~~tL~eAQ~~k~~~~~~kl~L~~G~--~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~-~r~~~~gl~ 121 (283)
T COG2230 45 YFEDPDMTLEEAQRAKLDLILEKLGLKPGM--TLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAE-KRIAARGLE 121 (283)
T ss_pred EeCCCCCChHHHHHHHHHHHHHhcCCCCCC--EEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHH-HHHHHcCCC
Confidence 666666555555566788899999988887 9999999999999999998 6777766654333322 234456766
Q ss_pred -cEEEEeccccCCCCCCccceEEecccccccccC-hHHHHHHHHHhccCCeEEEEEc
Q 036725 253 -AVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSAN-DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 253 -~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d-~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+.+...+.+. ..+.||-|++..+++|+... ...+++.++++|+|||.+++-+
T Consensus 122 ~~v~v~l~d~rd--~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~ 176 (283)
T COG2230 122 DNVEVRLQDYRD--FEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHS 176 (283)
T ss_pred cccEEEeccccc--cccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEE
Confidence 44444444422 23449999999999998743 4899999999999999999843
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-11 Score=120.84 Aligned_cols=113 Identities=20% Similarity=0.281 Sum_probs=81.0
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC-CCcEEEEeccc-c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG-VPAVIGVLGTI-K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg-~~~~~~~~~~~-~ 262 (392)
+...+.+++.+..... ..+|||||||+|.++..+++. .++++|+++.++.. |+++. ...+.++.++. .
T Consensus 98 e~~r~~~l~~~~l~~~-~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~-----A~~k~~~~~i~~i~gD~e~ 171 (340)
T PLN02490 98 EDMRDDALEPADLSDR-NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAK-----AKQKEPLKECKIIEGDAED 171 (340)
T ss_pred HHHHHHHHhhcccCCC-CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHH-----HHHhhhccCCeEEeccHHh
Confidence 4444555554443222 238999999999998888763 68888876654443 33321 22334455555 7
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+++++++||+|++..+++++. +...+|+++.|+|||||.+++..+
T Consensus 172 lp~~~~sFDvVIs~~~L~~~~-d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 172 LPFPTDYADRYVSAGSIEYWP-DPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred CCCCCCceeEEEEcChhhhCC-CHHHHHHHHHHhcCCCcEEEEEEe
Confidence 899999999999998887766 888999999999999999988754
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-11 Score=109.99 Aligned_cols=102 Identities=21% Similarity=0.290 Sum_probs=77.7
Q ss_pred eEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC-CCCCccceEEeccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP-YPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp-~~d~sFDlV~~~~~l~~~ 282 (392)
.||+||||+|..-.+.... .|+++|-++.+-..+...++.++......++.+.. .+| .+++|+|.|+|..++-..
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSv 158 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSV 158 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEecc
Confidence 5899999999887777643 78888777765555544444444444443555554 787 789999999999998655
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 283 SANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
. ++.+.|+|+.|+|||||.+++..+..
T Consensus 159 e-~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 159 E-DPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred C-CHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 4 99999999999999999999965433
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-11 Score=117.24 Aligned_cols=99 Identities=26% Similarity=0.303 Sum_probs=75.5
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLI 280 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~ 280 (392)
.+|||+|||+|..+..+++. .++++|+++.++..+.. .....+.+.+.+..++. .+|+++++||+|+++.+++
T Consensus 79 ~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~-~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v~~ 157 (272)
T PRK11873 79 ETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARA-NARKAGYTNVEFRLGEIEALPVADNSVDVIISNCVIN 157 (272)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH-HHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCccc
Confidence 39999999999877665543 48899887765554433 33345556666666665 7888889999999987775
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 281 PWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 281 ~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++ .+...+++++.|+|||||+|+++.
T Consensus 158 ~~-~d~~~~l~~~~r~LkpGG~l~i~~ 183 (272)
T PRK11873 158 LS-PDKERVFKEAFRVLKPGGRFAISD 183 (272)
T ss_pred CC-CCHHHHHHHHHHHcCCCcEEEEEE
Confidence 44 488899999999999999999975
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=9e-12 Score=112.18 Aligned_cols=100 Identities=23% Similarity=0.356 Sum_probs=72.7
Q ss_pred CCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc--CCCcEEEEeccccCCCCCCccceEEeccc
Q 036725 203 SGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER--GVPAVIGVLGTIKLPYPSRAFDMAHCSRC 278 (392)
Q Consensus 203 ~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r--g~~~~~~~~~~~~lp~~d~sFDlV~~~~~ 278 (392)
.+..+++||+|||.|.++..|+.+ .++++|+++ ..++.|++| +.+.+.+...+..-..|+++||+|+++.+
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~-----~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISP-----RALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEV 115 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-H-----HHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-
T ss_pred ccccceeEecCCCccHHHHHHHHhhCceEEEeCCH-----HHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehH
Confidence 444568999999999999999998 899997755 466666654 45777777777755678999999999998
Q ss_pred cccccc--ChHHHHHHHHHhccCCeEEEEEc
Q 036725 279 LIPWSA--NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 279 l~~~~~--d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+..+.+ +...++..+...|+|||.+++.+
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 866652 23678999999999999999965
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.26 E-value=4e-11 Score=108.75 Aligned_cols=109 Identities=19% Similarity=0.351 Sum_probs=78.7
Q ss_pred HHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccce
Q 036725 195 LASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDM 272 (392)
Q Consensus 195 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDl 272 (392)
+.+.++..++. ++||+|||.|..+.+|+++ .|+++|.++..+.. ..+.|.+.+++....+.+.....++ +.||+
T Consensus 22 v~~a~~~~~~g--~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~-l~~~a~~~~l~i~~~~~Dl~~~~~~-~~yD~ 97 (192)
T PF03848_consen 22 VLEAVPLLKPG--KALDLGCGEGRNALYLASQGFDVTAVDISPVALEK-LQRLAEEEGLDIRTRVADLNDFDFP-EEYDF 97 (192)
T ss_dssp HHHHCTTS-SS--EEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHH-HHHHHHHTT-TEEEEE-BGCCBS-T-TTEEE
T ss_pred HHHHHhhcCCC--cEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHH-HHHHHhhcCceeEEEEecchhcccc-CCcCE
Confidence 34444443333 8999999999999999999 79999998866655 4557778888855555554455554 67999
Q ss_pred EEecccccccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 273 AHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 273 V~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
|++..++.+...+. ..++..+...++|||++++..
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 99987776665444 689999999999999998853
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.2e-11 Score=116.68 Aligned_cols=97 Identities=20% Similarity=0.288 Sum_probs=72.4
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
+|||+|||+|.++.+|+++ .|+++|+++.++..+. +.+.+.++. +.....+. ..++ +++||+|++..++++...
T Consensus 123 ~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~-~~~~~~~l~-v~~~~~D~~~~~~-~~~fD~I~~~~vl~~l~~ 199 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQ-EIAEKENLN-IRTGLYDINSASI-QEEYDFILSTVVLMFLNR 199 (287)
T ss_pred CEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHH-HHHHHcCCc-eEEEEechhcccc-cCCccEEEEcchhhhCCH
Confidence 7999999999999999887 7899988876655433 345556663 33333333 4444 788999999988866542
Q ss_pred -ChHHHHHHHHHhccCCeEEEEEc
Q 036725 285 -NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 285 -d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+...+++++.|+|+|||++++..
T Consensus 200 ~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 200 ERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 34789999999999999977643
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=99.25 E-value=4e-11 Score=120.94 Aligned_cols=125 Identities=26% Similarity=0.492 Sum_probs=97.5
Q ss_pred CCCCCcceEEEECCcCchHHHHHhhCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc--cCCCCCCccceEEeccc
Q 036725 201 MDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--KLPYPSRAFDMAHCSRC 278 (392)
Q Consensus 201 ~~~~~~~~VLDiGCG~G~~~~~L~~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~--~lp~~d~sFDlV~~~~~ 278 (392)
...+..|+|+|+.+|.|.|+++|.+..|.+|-+.+. ...+......+||+ +.+..+. .++.-+++||+||+...
T Consensus 361 i~~~~iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGL---IG~yhDWCE~fsTYPRTYDLlHA~~l 436 (506)
T PF03141_consen 361 IKWGRIRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGL---IGVYHDWCEAFSTYPRTYDLLHADGL 436 (506)
T ss_pred ccccceeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhccc---chhccchhhccCCCCcchhheehhhh
Confidence 457788999999999999999999999999988775 45556667788886 4444454 56656899999999987
Q ss_pred cccccc--ChHHHHHHHHHhccCCeEEEEEcCCCchhhhhhhcccChHhHHHHHHHHHHHHHHcCceecce
Q 036725 279 LIPWSA--NDGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHE 347 (392)
Q Consensus 279 l~~~~~--d~~~~L~ei~RvLkPGG~lvl~~p~~~~~~~~~~w~~~~e~l~~~~~~i~~l~~~l~W~~~~~ 347 (392)
+..+.. +...+|.||+|+|||||++|+-.. .+...+++.+++.|.|+....
T Consensus 437 fs~~~~rC~~~~illEmDRILRP~G~~iiRD~------------------~~vl~~v~~i~~~lrW~~~~~ 489 (506)
T PF03141_consen 437 FSLYKDRCEMEDILLEMDRILRPGGWVIIRDT------------------VDVLEKVKKIAKSLRWEVRIH 489 (506)
T ss_pred hhhhcccccHHHHHHHhHhhcCCCceEEEecc------------------HHHHHHHHHHHHhCcceEEEE
Confidence 766542 337899999999999999999531 123456888999999986543
|
; GO: 0008168 methyltransferase activity |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.6e-12 Score=102.56 Aligned_cols=92 Identities=30% Similarity=0.498 Sum_probs=63.8
Q ss_pred EEEECCcCchHHHHHhhC-------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEeccc-cc
Q 036725 209 ALDTGCGVASWGAYLFKK-------NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRC-LI 280 (392)
Q Consensus 209 VLDiGCG~G~~~~~L~~~-------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~-l~ 280 (392)
|||+|||+|..+..+.+. .++++|+++.++..+..+. .+.+.+..+.+.+...+++.+++||+|+|... ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~-~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRF-SEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHS-HHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhc-hhcCCceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 799999999999888753 6788877665544433322 22345555555555588888999999999655 66
Q ss_pred ccccCh-HHHHHHHHHhccCCe
Q 036725 281 PWSAND-GMYMMEIDRVLRPGG 301 (392)
Q Consensus 281 ~~~~d~-~~~L~ei~RvLkPGG 301 (392)
|+.++. ..+++++.++|||||
T Consensus 80 ~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCC
Confidence 655333 789999999999998
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.9e-11 Score=112.35 Aligned_cols=98 Identities=20% Similarity=0.270 Sum_probs=72.8
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCCCCCCccceEEecccccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~ 281 (392)
+|||||||+|.++..+++. .++++|+++..+..+.. ...+.++ ..+.+...+. ..|++ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~-~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRE-RIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHh
Confidence 7999999999999988864 57888886654443333 2233343 2344444444 55664 58999999988877
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 282 WSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 282 ~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+. +...+++++.++|||||++++..+
T Consensus 80 ~~-~~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 80 IK-DKMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred CC-CHHHHHHHHHHHcCCCCEEEEEEc
Confidence 75 788999999999999999999764
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.5e-10 Score=95.22 Aligned_cols=111 Identities=22% Similarity=0.118 Sum_probs=76.8
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc--C
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK--L 263 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~--l 263 (392)
.....+.+.+....+. +|||+|||+|.++..++++ .++++|+++..+..+.. .+...+.+.+.++.++.. +
T Consensus 6 ~~~~~~~~~~~~~~~~--~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~ 82 (124)
T TIGR02469 6 EVRALTLSKLRLRPGD--VLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIER-NARRFGVSNIVIVEGDAPEAL 82 (124)
T ss_pred HHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHH-HHHHhCCCceEEEeccccccC
Confidence 3445555666543443 8999999999999999875 68899887755554433 333445555555555542 3
Q ss_pred CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+...++||.|++..... ....+++++.++|||||+|++..
T Consensus 83 ~~~~~~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 83 EDSLPEPDRVFIGGSGG----LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhhcCCCCEEEECCcch----hHHHHHHHHHHHcCCCCEEEEEe
Confidence 33346899999875432 34689999999999999999964
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-10 Score=101.35 Aligned_cols=117 Identities=24% Similarity=0.275 Sum_probs=78.0
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP 264 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp 264 (392)
+.-...|++.+..... .+|||+|||+|.++..++++ .++++|+++..+..+ .+.+...++..+.++..+...+
T Consensus 17 d~~t~lL~~~l~~~~~--~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a-~~n~~~n~~~~v~~~~~d~~~~ 93 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKG--GRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELA-KRNAERNGLENVEVVQSDLFEA 93 (170)
T ss_dssp HHHHHHHHHHHHHHTT--CEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHH-HHHHHHTTCTTEEEEESSTTTT
T ss_pred CHHHHHHHHHHhhccC--CeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHH-HHHHHhcCcccccccccccccc
Confidence 3333444444442222 38999999999999999987 489998887544443 3344455666566666666445
Q ss_pred CCCCccceEEeccccccccc----ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 265 YPSRAFDMAHCSRCLIPWSA----NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~~----d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.++++||+|+++.-++.-.. -...++.+..+.|||||.+++...
T Consensus 94 ~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 94 LPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp CCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 55899999999864422221 126789999999999999988653
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.3e-10 Score=110.84 Aligned_cols=96 Identities=20% Similarity=0.221 Sum_probs=68.1
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCc-EEEEeccccCCCCCCccceEEeccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPA-VIGVLGTIKLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~~~~~lp~~d~sFDlV~~~~~l~~~ 282 (392)
.+|||+|||+|.++..+++. .++++|+++.++..+.. .+...++.. +.....+ ..+..+++||+|+++...
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~-n~~~n~~~~~~~~~~~~-~~~~~~~~fDlVvan~~~--- 235 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARK-NAELNQVSDRLQVKLIY-LEQPIEGKADVIVANILA--- 235 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHcCCCcceEEEecc-cccccCCCceEEEEecCH---
Confidence 48999999999999888765 68999998866655444 333444432 2223222 233446799999997432
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 283 SANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.....++.++.++|||||++++++.
T Consensus 236 -~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 -EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred -HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 1335789999999999999999863
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-10 Score=106.90 Aligned_cols=102 Identities=20% Similarity=0.242 Sum_probs=74.9
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc--cCC--CCCCccceEEeccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--KLP--YPSRAFDMAHCSRC 278 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~--~lp--~~d~sFDlV~~~~~ 278 (392)
.+|||+|||+|.++..+++. .++++|+++.++..+.. .+...+.+++.++.++. .++ +++++||+|++...
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~-~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~ 120 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALK-KIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFP 120 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHH-HHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECC
Confidence 38999999999999988764 68999988866655443 33334555555566554 455 77889999998754
Q ss_pred cccccc--------ChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 279 LIPWSA--------NDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 279 l~~~~~--------d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
. +|.. ....+++++.++|||||+|+++.+..
T Consensus 121 ~-p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 121 D-PWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred C-CCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 3 4432 13678999999999999999986544
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.5e-11 Score=122.61 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=73.2
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC--CCCCccceEEeccccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP--YPSRAFDMAHCSRCLI 280 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp--~~d~sFDlV~~~~~l~ 280 (392)
+|||+|||+|.++..++++ .++++|+++.++..+..+. ...+. ...++.++. .+| +++++||+|+++.+++
T Consensus 421 rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl-~~~g~-~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH 498 (677)
T PRK06922 421 TIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKK-QNEGR-SWNVIKGDAINLSSSFEKESVDTIVYSSILH 498 (677)
T ss_pred EEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHh-hhcCC-CeEEEEcchHhCccccCCCCEEEEEEchHHH
Confidence 8999999999998888764 7899988776555544322 22233 233344444 677 8899999999998886
Q ss_pred ccc------------cChHHHHHHHHHhccCCeEEEEEcC
Q 036725 281 PWS------------ANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 281 ~~~------------~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++. .+...+|+++.|+|||||.+++...
T Consensus 499 ~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 499 ELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred hhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 552 2347899999999999999999753
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-10 Score=105.65 Aligned_cols=114 Identities=23% Similarity=0.298 Sum_probs=79.4
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP 264 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp 264 (392)
....+...+...++ .+|||+|||+|.++..+++. +++++|+++..+..+..+.........+.+...+. .++
T Consensus 39 ~~~~~~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 116 (239)
T PRK00216 39 WRRKTIKWLGVRPG--DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP 116 (239)
T ss_pred HHHHHHHHhCCCCC--CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC
Confidence 44455555544333 38999999999999888753 68888887654444333222211123344454554 667
Q ss_pred CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 265 YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++.++||+|+++.+++++. +...+|.++.++|+|||++++..
T Consensus 117 ~~~~~~D~I~~~~~l~~~~-~~~~~l~~~~~~L~~gG~li~~~ 158 (239)
T PRK00216 117 FPDNSFDAVTIAFGLRNVP-DIDKALREMYRVLKPGGRLVILE 158 (239)
T ss_pred CCCCCccEEEEecccccCC-CHHHHHHHHHHhccCCcEEEEEE
Confidence 7778999999998886665 88899999999999999998864
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.4e-11 Score=107.30 Aligned_cols=109 Identities=18% Similarity=0.287 Sum_probs=83.6
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCC
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSR 268 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~ 268 (392)
..++..++.... ++|.|+|||+|..+..|+++ .++|+|- +.+|+..|+++.+ +..+..++.+-=-|+.
T Consensus 20 ~dLla~Vp~~~~--~~v~DLGCGpGnsTelL~~RwP~A~i~GiDs-----S~~Mla~Aa~rlp-~~~f~~aDl~~w~p~~ 91 (257)
T COG4106 20 RDLLARVPLERP--RRVVDLGCGPGNSTELLARRWPDAVITGIDS-----SPAMLAKAAQRLP-DATFEEADLRTWKPEQ 91 (257)
T ss_pred HHHHhhCCcccc--ceeeecCCCCCHHHHHHHHhCCCCeEeeccC-----CHHHHHHHHHhCC-CCceecccHhhcCCCC
Confidence 345556664443 48999999999999999998 6677754 5567777777764 4445555553334678
Q ss_pred ccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 269 AFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.+|+++++.++ +|.+|...+|..+...|.|||.+.+-.|..
T Consensus 92 ~~dllfaNAvl-qWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 92 PTDLLFANAVL-QWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred ccchhhhhhhh-hhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 89999999877 898899999999999999999999987654
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-10 Score=107.26 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=70.2
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCC---------------cEEEEeccc-cCCCC-CC
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVP---------------AVIGVLGTI-KLPYP-SR 268 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~---------------~~~~~~~~~-~lp~~-d~ 268 (392)
+|||+|||.|..+.+|+++ .|+++|+++..+..+ +.+.++. .+.+..++. .++.. .+
T Consensus 37 rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~ 112 (213)
T TIGR03840 37 RVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQF----FAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG 112 (213)
T ss_pred eEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHH----HHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence 8999999999999999998 899998887655432 2333321 233344443 55432 45
Q ss_pred ccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 269 AFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.||.|+...+++|+.++. ..++..+.++|||||++++.+
T Consensus 113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 799999887888886555 679999999999999866653
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-10 Score=109.26 Aligned_cols=97 Identities=29% Similarity=0.426 Sum_probs=69.9
Q ss_pred CcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCC-CccceEEeccccc
Q 036725 205 MVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPS-RAFDMAHCSRCLI 280 (392)
Q Consensus 205 ~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d-~sFDlV~~~~~l~ 280 (392)
.+++|||+|||+|.++...++. .++++|+++..+..++. .++.++++..........+..+. +.||+|+++- |
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~e-Na~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI-L- 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARE-NARLNGVELLVQAKGFLLLEVPENGPFDVIVANI-L- 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHH-HHHHcCCchhhhcccccchhhcccCcccEEEehh-h-
Confidence 3459999999999999888876 69999998876555443 55566665422222222333344 5999999984 2
Q ss_pred ccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 281 PWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 281 ~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. ++ ..+..++.+.|||||++++++
T Consensus 239 --A-~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 239 --A-EVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred --H-HHHHHHHHHHHHHcCCCceEEEEe
Confidence 1 33 578899999999999999997
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-10 Score=105.46 Aligned_cols=93 Identities=17% Similarity=0.186 Sum_probs=68.4
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEeccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~ 282 (392)
.+|||||||+|.++..|++. .++++|+++ .+++.|+++. +.+.+..++..-|+++++||+|++..+++|+
T Consensus 45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~-----~~l~~A~~~~-~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl 118 (204)
T TIGR03587 45 ASILELGANIGMNLAALKRLLPFKHIYGVEINE-----YAVEKAKAYL-PNINIIQGSLFDPFKDNFFDLVLTKGVLIHI 118 (204)
T ss_pred CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH-----HHHHHHHhhC-CCCcEEEeeccCCCCCCCEEEEEECChhhhC
Confidence 37999999999999988764 578886655 4666666543 2233344444238889999999999999887
Q ss_pred ccC-hHHHHHHHHHhccCCeEEEEEc
Q 036725 283 SAN-DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 283 ~~d-~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.++ ...+++++.|++ ++++++..
T Consensus 119 ~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 119 NPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 633 378999999998 46777754
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.5e-10 Score=104.11 Aligned_cols=108 Identities=19% Similarity=0.125 Sum_probs=74.4
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-c
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-K 262 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~ 262 (392)
.....+.+.+...++. +|||+|||+|..+..+++. .|+++|+++.....+.. ...+.+.. .+.+..++. .
T Consensus 59 ~~~~~~~~~l~~~~~~--~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~-~l~~~~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 59 HMVAMMCELIEPRPGM--KILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQ-NIERLGYWGVVEVYHGDGKR 135 (205)
T ss_pred HHHHHHHHhcCCCCCC--EEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCcEEEEECCccc
Confidence 3456666666644444 8999999999999888753 68999887755544332 33344543 355555555 3
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
......+||+|++..++.+.. .++.++|+|||++++..
T Consensus 136 ~~~~~~~fD~Ii~~~~~~~~~-------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 136 GLEKHAPFDAIIVTAAASTIP-------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CCccCCCccEEEEccCcchhh-------HHHHHhcCcCcEEEEEE
Confidence 333457899999987664433 68889999999999864
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.7e-11 Score=112.71 Aligned_cols=102 Identities=18% Similarity=0.318 Sum_probs=68.5
Q ss_pred cceEEEECCcCch----HHHHHhhC---------CcEEEeCCccChHHHHHHHH---HHcCCC-----------------
Q 036725 206 VRTALDTGCGVAS----WGAYLFKK---------NVITMSFAPRDSHEAQVQFA---LERGVP----------------- 252 (392)
Q Consensus 206 ~~~VLDiGCG~G~----~~~~L~~~---------~v~~vd~s~~d~~~a~~~~a---~~rg~~----------------- 252 (392)
..+|||+|||+|. ++..|++. .|+|+|+++.++..+....- .-++++
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 3589999999994 45555432 57888776654444332110 001111
Q ss_pred ------cEEEEeccc-cCCCCCCccceEEeccccccccc-ChHHHHHHHHHhccCCeEEEEEc
Q 036725 253 ------AVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 253 ------~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+.+...+. ..++++++||+|+|..+++++.+ +...+++++.++|+|||+|++..
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 234444444 66667899999999999988763 23689999999999999999953
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.8e-11 Score=121.01 Aligned_cols=112 Identities=20% Similarity=0.283 Sum_probs=81.1
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc---cCCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI---KLPYP 266 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~---~lp~~ 266 (392)
...+.+.++...+. +|||||||+|.++..|++. .++++|+++.++..+.. .....+++.++..+. .+|++
T Consensus 26 ~~~il~~l~~~~~~--~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~~~~i~~~~~d~~~~~~~~~ 100 (475)
T PLN02336 26 RPEILSLLPPYEGK--SVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGHYKNVKFMCADVTSPDLNIS 100 (475)
T ss_pred hhHHHhhcCccCCC--EEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---HhccCCceEEEEecccccccCCC
Confidence 34555666543333 8999999999999999986 78999887765543211 112234444454443 57888
Q ss_pred CCccceEEecccccccccC-hHHHHHHHHHhccCCeEEEEEcC
Q 036725 267 SRAFDMAHCSRCLIPWSAN-DGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d-~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+++||+|++..+++++.++ ...+++++.|+|||||++++...
T Consensus 101 ~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~ 143 (475)
T PLN02336 101 DGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRES 143 (475)
T ss_pred CCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 9999999999988777633 37899999999999999999653
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.1e-10 Score=101.78 Aligned_cols=95 Identities=18% Similarity=0.227 Sum_probs=70.8
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~ 281 (392)
.+|||+|||+|.++..++.. .|+++|.++.++..+. +.+++.+++++.++.++. .++ .+++||+|++.. +
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~-~~~~~~~~~~i~~i~~d~~~~~-~~~~fD~I~s~~-~-- 118 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLR-EVKAELGLNNVEIVNGRAEDFQ-HEEQFDVITSRA-L-- 118 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHH-HHHHHhCCCCeEEEecchhhcc-ccCCccEEEehh-h--
Confidence 38999999999988887643 6999998876554433 344455666666677666 543 367999999864 2
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 282 WSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 282 ~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
. +...+++.+.++|||||.+++...
T Consensus 119 -~-~~~~~~~~~~~~LkpgG~lvi~~~ 143 (181)
T TIGR00138 119 -A-SLNVLLELTLNLLKVGGYFLAYKG 143 (181)
T ss_pred -h-CHHHHHHHHHHhcCCCCEEEEEcC
Confidence 2 556788999999999999999753
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.8e-09 Score=97.83 Aligned_cols=112 Identities=15% Similarity=0.049 Sum_probs=78.1
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL 263 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l 263 (392)
.+.....+.+.+....+. +|||+|||+|.++..++++ +++++|+++..+..++. .+...++..+.+..++...
T Consensus 16 ~~~~r~~~~~~l~~~~~~--~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~-n~~~~~~~~i~~~~~d~~~ 92 (187)
T PRK08287 16 KEEVRALALSKLELHRAK--HLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKE-NRQRFGCGNIDIIPGEAPI 92 (187)
T ss_pred hHHHHHHHHHhcCCCCCC--EEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCeEEEecCchh
Confidence 344445555666544443 8999999999999988764 78999988765554433 3334455555556555544
Q ss_pred CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++ .++||+|++..... ....++.++.++|+|||++++..
T Consensus 93 ~~-~~~~D~v~~~~~~~----~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 93 EL-PGKADAIFIGGSGG----NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred hc-CcCCCEEEECCCcc----CHHHHHHHHHHhcCCCeEEEEEE
Confidence 44 35799999875432 44678999999999999999864
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.1e-10 Score=104.70 Aligned_cols=101 Identities=19% Similarity=0.274 Sum_probs=75.7
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC---CCCCccceEEecccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP---YPSRAFDMAHCSRCL 279 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp---~~d~sFDlV~~~~~l 279 (392)
++||||||+|.++..++++ +++++|++..++..+.. .+.+.++.++.++.++. .++ +++++||.|+++...
T Consensus 19 ~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~-~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~pd 97 (194)
T TIGR00091 19 LHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANN-KANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFPD 97 (194)
T ss_pred eEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHH-HHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECCC
Confidence 8999999999999999876 78999988765555443 34455666777777776 433 556799999987543
Q ss_pred cccccCh--------HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 280 IPWSAND--------GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 280 ~~~~~d~--------~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+|.... ..++.++.|+|||||.|++.+...
T Consensus 98 -pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 98 -PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred -cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 554321 478999999999999999976433
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.9e-10 Score=114.34 Aligned_cols=108 Identities=25% Similarity=0.422 Sum_probs=77.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcC--CCcEEEEeccc-c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERG--VPAVIGVLGTI-K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg--~~~~~~~~~~~-~ 262 (392)
...++.+.+.+...++. +|||||||+|.++..++++ .|+++|+++ .+++.|+++. .. +.+...+. .
T Consensus 153 ~~k~~~l~~~l~l~~g~--rVLDIGcG~G~~a~~la~~~g~~V~giDlS~-----~~l~~A~~~~~~l~-v~~~~~D~~~ 224 (383)
T PRK11705 153 EAKLDLICRKLQLKPGM--RVLDIGCGWGGLARYAAEHYGVSVVGVTISA-----EQQKLAQERCAGLP-VEIRLQDYRD 224 (383)
T ss_pred HHHHHHHHHHhCCCCCC--EEEEeCCCccHHHHHHHHHCCCEEEEEeCCH-----HHHHHHHHHhccCe-EEEEECchhh
Confidence 34566677777655554 8999999999999999875 577886655 4555555542 22 33333333 3
Q ss_pred CCCCCCccceEEeccccccccc-ChHHHHHHHHHhccCCeEEEEEc
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+ +++||.|++..+++|... +...+++++.|+|||||++++..
T Consensus 225 l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 225 L---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred c---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3 578999999988877642 34789999999999999999964
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.5e-10 Score=102.96 Aligned_cols=110 Identities=22% Similarity=0.334 Sum_probs=78.6
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcC--CCcEEEEeccc-
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERG--VPAVIGVLGTI- 261 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg--~~~~~~~~~~~- 261 (392)
.+...+.+.+....+ .+|||+|||+|.++..+++. .++++|+++. +++.+.++. ...+.+..++.
T Consensus 26 ~~~~~~~~~~~~~~~--~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~-----~~~~~~~~~~~~~~i~~~~~d~~ 98 (223)
T TIGR01934 26 LWRRRAVKLIGVFKG--QKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSE-----MLEVAKKKSELPLNIEFIQADAE 98 (223)
T ss_pred HHHHHHHHHhccCCC--CeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHH-----HHHHHHHHhccCCCceEEecchh
Confidence 344555555553333 48999999999999988765 5778877553 333443332 22334444544
Q ss_pred cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 262 KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 262 ~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+++++++||+|+++.++++.. +...+++++.++|+|||++++..
T Consensus 99 ~~~~~~~~~D~i~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~~~~ 143 (223)
T TIGR01934 99 ALPFEDNSFDAVTIAFGLRNVT-DIQKALREMYRVLKPGGRLVILE 143 (223)
T ss_pred cCCCCCCcEEEEEEeeeeCCcc-cHHHHHHHHHHHcCCCcEEEEEE
Confidence 7778788999999988876655 88999999999999999999865
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.2e-10 Score=111.22 Aligned_cols=117 Identities=14% Similarity=0.142 Sum_probs=79.3
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC---CcEEEEecc
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV---PAVIGVLGT 260 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~---~~~~~~~~~ 260 (392)
.+.-.+.+++.++...+ .+|||+|||+|.++..++++ .|+++|.++.++..++.... ..+. ..+.+..++
T Consensus 213 LD~GtrllL~~lp~~~~--~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~-~n~~~~~~~v~~~~~D 289 (378)
T PRK15001 213 LDIGARFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVE-TNMPEALDRCEFMINN 289 (378)
T ss_pred cChHHHHHHHhCCcccC--CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH-HcCcccCceEEEEEcc
Confidence 34445667777764433 38999999999999999875 78999888765555444332 2232 234445554
Q ss_pred ccCCCCCCccceEEeccccccc---cc-ChHHHHHHHHHhccCCeEEEEEc
Q 036725 261 IKLPYPSRAFDMAHCSRCLIPW---SA-NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 261 ~~lp~~d~sFDlV~~~~~l~~~---~~-d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..-.+++.+||+|+|+..++.- .. ...+++.++.++|+|||.|+++.
T Consensus 290 ~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 290 ALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4223445689999998665322 11 12578999999999999999985
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-10 Score=108.87 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=69.8
Q ss_pred cceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcC-C-CcEEEEe--ccccCCCCCCccceEEecccc
Q 036725 206 VRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERG-V-PAVIGVL--GTIKLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg-~-~~~~~~~--~~~~lp~~d~sFDlV~~~~~l 279 (392)
+++|||+|||+|.++..|++. .|+|+|++..++..+... +.... . .++.+.. ......--.+.||+|+|+.++
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h-~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevl 168 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEH-KKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVL 168 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHh-hhcCchhccccceeeehhhcchhhcccccceeeeHHHH
Confidence 357999999999999999987 778886655444433332 11110 0 0111111 111111113459999999999
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 280 IPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 280 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+|.. ++..++.-+.+.|||||.+++++-..
T Consensus 169 eHV~-dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 169 EHVK-DPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHh-CHHHHHHHHHHHhCCCCceEeeehhh
Confidence 9998 99999999999999999999986433
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.9e-10 Score=111.71 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=79.4
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC--CCCCCccceEEeccccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL--PYPSRAFDMAHCSRCLI 280 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l--p~~d~sFDlV~~~~~l~ 280 (392)
.+||||||+|.++..++.+ .++|+|++..++..+.. .+.+.++.++.++.++. .+ .++++++|.|++.+. .
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~-ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP-d 202 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLK-QIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP-V 202 (390)
T ss_pred eEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHH-HHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC-C
Confidence 8999999999999999976 79999998866666544 45567788887787776 32 578999999998754 3
Q ss_pred ccccCh------HHHHHHHHHhccCCeEEEEEcCC
Q 036725 281 PWSAND------GMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 281 ~~~~d~------~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+|.... ..++.++.|+|+|||.+.+.+..
T Consensus 203 PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 203 PWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 665433 47999999999999999996533
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.7e-10 Score=107.31 Aligned_cols=108 Identities=26% Similarity=0.368 Sum_probs=79.6
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHc-CCCc-EEEE-eccccCCCC
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALER-GVPA-VIGV-LGTIKLPYP 266 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~r-g~~~-~~~~-~~~~~lp~~ 266 (392)
+++...++...+ ++|||||||.|+++-.|+.+ .|+|+|-++ ....|-+++++. +... +... .+...+|.
T Consensus 105 ~rl~p~l~~L~g--k~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~--lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~- 179 (315)
T PF08003_consen 105 DRLLPHLPDLKG--KRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP--LFYLQFEAIKHFLGQDPPVFELPLGVEDLPN- 179 (315)
T ss_pred HHHHhhhCCcCC--CEEEEecCCCcHHHHHHhhcCCCEEEEECCCh--HHHHHHHHHHHHhCCCccEEEcCcchhhccc-
Confidence 445555543334 49999999999999999987 577776543 344454444432 2333 2223 35558887
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.++||+|+|..+|.|.. ++-..|.++...|+|||.+++.
T Consensus 180 ~~~FDtVF~MGVLYHrr-~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 180 LGAFDTVFSMGVLYHRR-SPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred cCCcCEEEEeeehhccC-CHHHHHHHHHHhhCCCCEEEEE
Confidence 78999999999998877 9999999999999999999984
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.3e-09 Score=103.43 Aligned_cols=91 Identities=26% Similarity=0.337 Sum_probs=62.8
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
.+|||+|||+|.++..+++. .++++|+++..+..+.. .+...++... ..++..+.+||+|+++...
T Consensus 121 ~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~-n~~~~~~~~~------~~~~~~~~~fD~Vvani~~---- 189 (250)
T PRK00517 121 KTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARE-NAELNGVELN------VYLPQGDLKADVIVANILA---- 189 (250)
T ss_pred CEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHcCCCce------EEEccCCCCcCEEEEcCcH----
Confidence 48999999999998887765 48899887765554443 3333444211 1222223379999987432
Q ss_pred cChHHHHHHHHHhccCCeEEEEEcC
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.....++.++.++|||||++++++.
T Consensus 190 ~~~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 190 NPLLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 1235788999999999999999853
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-10 Score=106.00 Aligned_cols=101 Identities=19% Similarity=0.293 Sum_probs=69.8
Q ss_pred HHHHHhhCCC-CCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC-
Q 036725 192 IEELASVIPM-DSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL- 263 (392)
Q Consensus 192 i~~l~~~l~~-~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l- 263 (392)
+.++.+.+.. .++ .+|||||||+|.++..++++ .|+++|+++. ...+.+.++.++. ..
T Consensus 39 l~~~~~~~~~~~~~--~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~------------~~~~~v~~i~~D~~~~~ 104 (209)
T PRK11188 39 LDEIQQSDKLFKPG--MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM------------DPIVGVDFLQGDFRDEL 104 (209)
T ss_pred hHHHHHHhccCCCC--CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc------------cCCCCcEEEecCCCChH
Confidence 3444444442 333 38999999999999988775 5899998761 1123345555555 32
Q ss_pred -------CCCCCccceEEecccccccccCh-----------HHHHHHHHHhccCCeEEEEEc
Q 036725 264 -------PYPSRAFDMAHCSRCLIPWSAND-----------GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 -------p~~d~sFDlV~~~~~l~~~~~d~-----------~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++.+++||+|+|+.+. ++..++ ..+|.++.++|||||.|++..
T Consensus 105 ~~~~i~~~~~~~~~D~V~S~~~~-~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 105 VLKALLERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred HHHHHHHHhCCCCCCEEecCCCC-ccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 3668899999997654 332221 468999999999999999964
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.4e-10 Score=108.07 Aligned_cols=123 Identities=22% Similarity=0.244 Sum_probs=81.3
Q ss_pred cCCCCCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcE
Q 036725 178 PGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAV 254 (392)
Q Consensus 178 p~~g~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~ 254 (392)
-..|.-|..|.+......++.+.......++|||+|||+|.++...++. .|+++|+++..+.. ..+.++.+++...
T Consensus 134 idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~-a~~N~~~N~~~~~ 212 (295)
T PF06325_consen 134 IDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEA-ARENAELNGVEDR 212 (295)
T ss_dssp ESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHH-HHHHHHHTT-TTC
T ss_pred ECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHH-HHHHHHHcCCCee
Confidence 3466678887777665555554422222349999999999888777765 79999998865554 4446666776654
Q ss_pred EEEeccccCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 255 IGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 255 ~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..+... .......||+|+++-.. .-...++..+.++|+|||+|++++
T Consensus 213 ~~v~~~--~~~~~~~~dlvvANI~~----~vL~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 213 IEVSLS--EDLVEGKFDLVVANILA----DVLLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp EEESCT--SCTCCS-EEEEEEES-H----HHHHHHHHHCHHHEEEEEEEEEEE
T ss_pred EEEEEe--cccccccCCEEEECCCH----HHHHHHHHHHHHhhCCCCEEEEcc
Confidence 434322 22335899999987432 123567888999999999999996
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.3e-10 Score=101.89 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=76.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~ 262 (392)
......+.+.+...++. +|||||||+|+++..+++. .|+++|+++.....+. +...+.+..++.++.++. .
T Consensus 62 p~~~~~~~~~l~~~~g~--~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~-~~l~~~g~~~v~~~~gd~~~ 138 (212)
T PRK13942 62 IHMVAIMCELLDLKEGM--KVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAK-KTLKKLGYDNVEVIVGDGTL 138 (212)
T ss_pred HHHHHHHHHHcCCCCcC--EEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCCeEEEECCccc
Confidence 34556666666655554 8999999999999888764 6899988775444433 233445666677777776 4
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+.+.+.||+|++.....+. ...+.+.|||||.+++..
T Consensus 139 ~~~~~~~fD~I~~~~~~~~~-------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 139 GYEENAPYDRIYVTAAGPDI-------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcCCCcCEEEECCCcccc-------hHHHHHhhCCCcEEEEEE
Confidence 44456889999987654332 356778999999999953
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=101.09 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=76.3
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--C---cEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--N---VITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL 263 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~---v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l 263 (392)
.....+.+.+....+. +|||||||+|.++..|++. . |+++|+++..+..+. +.+.+.++.++.++.++. ..
T Consensus 64 ~~~~~~~~~l~~~~~~--~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~-~~~~~~g~~~v~~~~~d~~~~ 140 (215)
T TIGR00080 64 HMVAMMTELLELKPGM--KVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE-RRLRKLGLDNVIVIVGDGTQG 140 (215)
T ss_pred HHHHHHHHHhCCCCcC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHCCCCCeEEEECCcccC
Confidence 3455666666655554 8999999999999998875 3 899988875544433 344555666677777665 33
Q ss_pred CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+.||+|++.....+ +...+.+.|+|||++++..
T Consensus 141 ~~~~~~fD~Ii~~~~~~~-------~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 141 WEPLAPYDRIYVTAAGPK-------IPEALIDQLKEGGILVMPV 177 (215)
T ss_pred CcccCCCCEEEEcCCccc-------ccHHHHHhcCcCcEEEEEE
Confidence 333568999998754432 3467889999999999864
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-09 Score=104.59 Aligned_cols=119 Identities=23% Similarity=0.243 Sum_probs=84.8
Q ss_pred ccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc
Q 036725 186 HGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI 261 (392)
Q Consensus 186 ~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~ 261 (392)
...+.-.+.|++.++...+. +|||+|||.|.++..|++. .++-+|++...+..++. .+..+++.+..+..++.
T Consensus 141 ~~lD~GS~lLl~~l~~~~~~--~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~-Nl~~N~~~~~~v~~s~~ 217 (300)
T COG2813 141 DKLDKGSRLLLETLPPDLGG--KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARK-NLAANGVENTEVWASNL 217 (300)
T ss_pred CCcChHHHHHHHhCCccCCC--cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHH-hHHHcCCCccEEEEecc
Confidence 34555667788888865554 8999999999999999987 67777776654444333 33334555534556666
Q ss_pred cCCCCCCccceEEecccccccccCh----HHHHHHHHHhccCCeEEEEEcC
Q 036725 262 KLPYPSRAFDMAHCSRCLIPWSAND----GMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 262 ~lp~~d~sFDlV~~~~~l~~~~~d~----~~~L~ei~RvLkPGG~lvl~~p 308 (392)
..+.++ +||+|+|+--+|.-..-. .+++.+..+.|++||.|+++..
T Consensus 218 ~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 218 YEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 666656 999999997654322111 3899999999999999999875
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.5e-10 Score=102.71 Aligned_cols=114 Identities=20% Similarity=0.260 Sum_probs=77.8
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLP 264 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp 264 (392)
+...+.+.+.++.......+|||+|||+|.++..+++. .++++|+++.++..++.+.. ..+. ..+.+...+. .++
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~~~ 117 (219)
T TIGR02021 39 AAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQ-GRDVAGNVEFEVNDLLSLC 117 (219)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-hcCCCCceEEEECChhhCC
Confidence 44555566666521122348999999999999999876 78899887765555443332 2232 2445555554 443
Q ss_pred CCCCccceEEeccccccccc-ChHHHHHHHHHhccCCeEEEEE
Q 036725 265 YPSRAFDMAHCSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
++||+|++..+++++.. +...++.++.+++++++++.+.
T Consensus 118 ---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 118 ---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred ---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 78999999888877753 3478999999999987776654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.7e-09 Score=98.27 Aligned_cols=117 Identities=21% Similarity=0.293 Sum_probs=81.0
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK 262 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~ 262 (392)
..+.+++.+.+.+.. . ..+|||+|||+|.++..+++. .++++|+++..+..+.. .+...+++++.+..++..
T Consensus 72 ~~~~l~~~~l~~~~~-~--~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~~~~~~~~~~~d~~ 147 (251)
T TIGR03534 72 DTEELVEAALERLKK-G--PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARK-NAARLGLDNVTFLQSDWF 147 (251)
T ss_pred ChHHHHHHHHHhccc-C--CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEECchh
Confidence 345667777766652 2 238999999999999999875 78899888765554433 334456665666666664
Q ss_pred CCCCCCccceEEecccccc------cccC-------------------hHHHHHHHHHhccCCeEEEEEc
Q 036725 263 LPYPSRAFDMAHCSRCLIP------WSAN-------------------DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~------~~~d-------------------~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
-++++++||+|+++.-... +..+ ...++.++.++|+|||.+++..
T Consensus 148 ~~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 148 EPLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred ccCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4667889999998643221 1000 1367899999999999999964
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=105.33 Aligned_cols=101 Identities=9% Similarity=0.178 Sum_probs=73.9
Q ss_pred cceEEEECCcCchHHHHHhh--C----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCCCCCCccceEEecc
Q 036725 206 VRTALDTGCGVASWGAYLFK--K----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLPYPSRAFDMAHCSR 277 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~--~----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp~~d~sFDlV~~~~ 277 (392)
.++|+|||||.|.+++.++. . .++++|.++..+..+........++ +.+.+..++. .++-..+.||+|++.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~- 202 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA- 202 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-
Confidence 35899999998855544332 2 5899999886666555433333555 3466776665 443235789999999
Q ss_pred cccccc-cChHHHHHHHHHhccCCeEEEEEc
Q 036725 278 CLIPWS-ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 278 ~l~~~~-~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++++|. ++...+|..+.+.|+|||++++-.
T Consensus 203 ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 888884 577999999999999999999965
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-09 Score=107.38 Aligned_cols=115 Identities=16% Similarity=0.147 Sum_probs=78.3
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP 264 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp 264 (392)
+.-.+.+++.++..... +|||+|||+|.++..++++ .++++|+++.++..+... +...++...+. ..+.. .
T Consensus 182 D~gt~lLl~~l~~~~~g--~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~n-l~~n~l~~~~~-~~D~~-~ 256 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKG--KVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRAT-LAANGLEGEVF-ASNVF-S 256 (342)
T ss_pred CHHHHHHHHhccccCCC--eEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH-HHHcCCCCEEE-Ecccc-c
Confidence 34445556655533222 7999999999999999875 688999887666655443 33445544332 33321 2
Q ss_pred CCCCccceEEecccccccc----cChHHHHHHHHHhccCCeEEEEEcC
Q 036725 265 YPSRAFDMAHCSRCLIPWS----ANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~----~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
..+++||+|+|+..++... .....++.++.+.|||||.|+++.+
T Consensus 257 ~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 257 DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 2367899999997664322 1236899999999999999999864
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.8e-10 Score=102.17 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=68.4
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCC---------------cEEEEeccc-cCCCC-CC
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVP---------------AVIGVLGTI-KLPYP-SR 268 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~---------------~~~~~~~~~-~lp~~-d~ 268 (392)
+|||+|||.|..+.+|+++ .|+++|+++..+..+ +.++++. .+.+..++. .++.. ..
T Consensus 40 rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~----~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~ 115 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQF----FAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA 115 (218)
T ss_pred eEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHH----HHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence 8999999999999999998 899998877644432 2344332 233333443 55332 35
Q ss_pred ccceEEecccccccccCh-HHHHHHHHHhccCCeEEEE
Q 036725 269 AFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl 305 (392)
.||+|+-..+++++.++. ..++..+.++|+|||++++
T Consensus 116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 899999888887776555 6899999999999997554
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-09 Score=105.63 Aligned_cols=110 Identities=22% Similarity=0.303 Sum_probs=77.3
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLPY 265 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp~ 265 (392)
.+.+.+.+....+ .+|||||||+|.++..++++ +++++|. +..+.. ..+.+.+.++ +.+.++.++. ..++
T Consensus 138 ~~~l~~~~~~~~~--~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~-a~~~~~~~gl~~rv~~~~~d~~~~~~ 213 (306)
T TIGR02716 138 IQLLLEEAKLDGV--KKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDL-VNENAAEKGVADRMRGIAVDIYKESY 213 (306)
T ss_pred HHHHHHHcCCCCC--CEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHH-HHHHHHhCCccceEEEEecCccCCCC
Confidence 4445555554333 48999999999999999887 5777776 322322 2234444554 3455666665 4566
Q ss_pred CCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 266 PSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++ +|+|++++++++|.++. ..+|+++.++|||||++++..
T Consensus 214 ~~--~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d 254 (306)
T TIGR02716 214 PE--ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 254 (306)
T ss_pred CC--CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 54 69999998998887443 689999999999999999975
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-09 Score=100.08 Aligned_cols=112 Identities=21% Similarity=0.317 Sum_probs=72.8
Q ss_pred HHHHHHHhhCCC-CCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccccCCC
Q 036725 190 AYIEELASVIPM-DSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKLPY 265 (392)
Q Consensus 190 ~~i~~l~~~l~~-~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~~lp~ 265 (392)
...+.+.+.++. ......+|||||||+|.++..|++. .++++|+++.++..+..... ..+. ..+.+...+ ++.
T Consensus 47 ~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~-~~~~~~~i~~~~~d--~~~ 123 (230)
T PRK07580 47 RMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAP-EAGLAGNITFEVGD--LES 123 (230)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH-hcCCccCcEEEEcC--chh
Confidence 344444544432 0112248999999999999999876 68889887766555544332 2232 234444444 455
Q ss_pred CCCccceEEecccccccccC-hHHHHHHHHHhccCCeEEE
Q 036725 266 PSRAFDMAHCSRCLIPWSAN-DGMYMMEIDRVLRPGGYWV 304 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d-~~~~L~ei~RvLkPGG~lv 304 (392)
.+++||+|++..+++|+... ...+++++.+++++++++.
T Consensus 124 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 124 LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 57899999999988787633 3678889988876554443
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-09 Score=99.23 Aligned_cols=93 Identities=22% Similarity=0.209 Sum_probs=64.4
Q ss_pred ceEEEECCcCchHHHHHhhC--------CcEEEeCCccChHHHHHHHHHHcCC-CcEEE-EeccccCCCCCCccceEEec
Q 036725 207 RTALDTGCGVASWGAYLFKK--------NVITMSFAPRDSHEAQVQFALERGV-PAVIG-VLGTIKLPYPSRAFDMAHCS 276 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~-~~~~~~lp~~d~sFDlV~~~ 276 (392)
.+|||+|||+|.++..|++. .++++|+++. +++.|+++.. +.+.+ +.....+++++++||+|+++
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~-----~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~ 136 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPR-----AVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN 136 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHH-----HHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence 48999999999998887641 6888876654 5555544321 11222 22223566678899999999
Q ss_pred ccccccccC-hHHHHHHHHHhccCCeEEEEE
Q 036725 277 RCLIPWSAN-DGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 277 ~~l~~~~~d-~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.+++|+.++ ...+|+++.|++| |.+++.
T Consensus 137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~ 165 (232)
T PRK06202 137 HFLHHLDDAEVVRLLADSAALAR--RLVLHN 165 (232)
T ss_pred CeeecCChHHHHHHHHHHHHhcC--eeEEEe
Confidence 999887633 2579999999998 444444
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.6e-09 Score=98.91 Aligned_cols=114 Identities=18% Similarity=0.255 Sum_probs=77.4
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC-CCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP-YPS 267 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp-~~d 267 (392)
++.+...+....+ .+|||||||+|.++..+.+. .++++|+++..+..+.... ...+... .+...+. .++ ..+
T Consensus 37 ~~~l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~-~~~~~~~-~~~~~~~~~~~~~~~ 112 (233)
T PRK05134 37 LNYIREHAGGLFG--KRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHA-LESGLKI-DYRQTTAEELAAEHP 112 (233)
T ss_pred HHHHHHhccCCCC--CeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHH-HHcCCce-EEEecCHHHhhhhcC
Confidence 4444444432233 48999999999999988876 6888877665444333222 2223322 2333333 333 346
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++||+|++..++.+.. ++..+|+++.++|+|||.++++.+..
T Consensus 113 ~~fD~Ii~~~~l~~~~-~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 113 GQFDVVTCMEMLEHVP-DPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred CCccEEEEhhHhhccC-CHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 7999999998887665 88899999999999999999986543
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.1e-09 Score=103.10 Aligned_cols=117 Identities=17% Similarity=0.125 Sum_probs=72.3
Q ss_pred HHHHHHHHhhCCCC-CCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc----CCCcEEEEeccc
Q 036725 189 DAYIEELASVIPMD-SGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER----GVPAVIGVLGTI 261 (392)
Q Consensus 189 ~~~i~~l~~~l~~~-~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r----g~~~~~~~~~~~ 261 (392)
+..++.+.+.+... .....+|||+|||+|.++..|+++ .|+++|+++.++..+..+..... +.....+...+.
T Consensus 127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 34455555555422 112248999999999999999987 68999888776665554332210 112233333333
Q ss_pred cCCCCCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEcC
Q 036725 262 KLPYPSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 262 ~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+..+++||+|+|..+++|+.++. ..++..+.+ +.+||.++...|
T Consensus 207 --~~l~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p 251 (315)
T PLN02585 207 --ESLSGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAP 251 (315)
T ss_pred --hhcCCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCC
Confidence 22268899999999998887443 345666665 456666554434
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-09 Score=95.55 Aligned_cols=98 Identities=19% Similarity=0.225 Sum_probs=69.3
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
+|||+|||+|.++..++++ .++++|+++.++..+..+. ...+. .+.+..++. ..+ .++||+|+++..+++...
T Consensus 22 ~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~-~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 22 DVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENA-KLNNV-GLDVVMTDLFKGV--RGKFDVILFNPPYLPLED 97 (179)
T ss_pred eEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHH-HHcCC-ceEEEEccccccc--CCcccEEEECCCCCCCcc
Confidence 7999999999999999987 5889988876555444333 23343 334444444 332 458999999876654431
Q ss_pred C--------------------hHHHHHHHHHhccCCeEEEEEcCC
Q 036725 285 N--------------------DGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 285 d--------------------~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
. ...++.++.|+|||||.+++..+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 98 DLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred hhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 1 246899999999999999997643
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.3e-10 Score=102.13 Aligned_cols=92 Identities=21% Similarity=0.263 Sum_probs=67.8
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEE-----eccccCCCC--CCccceEEecc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGV-----LGTIKLPYP--SRAFDMAHCSR 277 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~-----~~~~~lp~~--d~sFDlV~~~~ 277 (392)
+.++|+|||+|..+..+++. +|+++|+ +++|++.|++.- ++.... .++...++. ++|.|+|+|..
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~k~VIatD~-----s~~mL~~a~k~~-~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHYKEVIATDV-----SEAMLKVAKKHP-PVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhhhhheeecC-----CHHHHHHhhcCC-CcccccCCccccccccccccCCCcceeeehhhh
Confidence 48999999999777777776 8999955 566888777653 222211 112223333 89999999999
Q ss_pred cccccccChHHHHHHHHHhccCCe-EEEEE
Q 036725 278 CLIPWSANDGMYMMEIDRVLRPGG-YWVLS 306 (392)
Q Consensus 278 ~l~~~~~d~~~~L~ei~RvLkPGG-~lvl~ 306 (392)
|+ ||. |.+.+++++.|+||+.| ++.+-
T Consensus 109 a~-HWF-dle~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 109 AV-HWF-DLERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred hH-Hhh-chHHHHHHHHHHcCCCCCEEEEE
Confidence 88 898 99999999999999877 55553
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-09 Score=98.67 Aligned_cols=104 Identities=21% Similarity=0.282 Sum_probs=70.7
Q ss_pred hhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC-----CCC
Q 036725 197 SVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP-----YPS 267 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp-----~~d 267 (392)
+.++..++. +|||+|||+|.++..|++. .|+++|+++.++.... +.++++ +++..+.++...| + .
T Consensus 66 ~~l~i~~g~--~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~-~~a~~~--~nv~~i~~D~~~~~~~~~l-~ 139 (226)
T PRK04266 66 KNFPIKKGS--KVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL-EVAEER--KNIIPILADARKPERYAHV-V 139 (226)
T ss_pred hhCCCCCCC--EEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH-HHhhhc--CCcEEEECCCCCcchhhhc-c
Confidence 346655554 8999999999999999886 5999998876665433 344443 3444455554322 2 3
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
++||+|++... .......++.++.|+|||||.++++.+.
T Consensus 140 ~~~D~i~~d~~---~p~~~~~~L~~~~r~LKpGG~lvI~v~~ 178 (226)
T PRK04266 140 EKVDVIYQDVA---QPNQAEIAIDNAEFFLKDGGYLLLAIKA 178 (226)
T ss_pred ccCCEEEECCC---ChhHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 56999986422 1112245689999999999999997543
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.5e-09 Score=96.43 Aligned_cols=100 Identities=21% Similarity=0.184 Sum_probs=67.9
Q ss_pred eEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEeccccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
+|||+|||+|.++..+++. +++++|+++..+..+.. .+...+.. ..++.++....+++++||+|+++.-..+-..
T Consensus 39 ~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~-n~~~~~~~-~~~~~~d~~~~~~~~~fD~Vi~npPy~~~~~ 116 (223)
T PRK14967 39 RVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARL-NALLAGVD-VDVRRGDWARAVEFRPFDVVVSNPPYVPAPP 116 (223)
T ss_pred eEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHHhCCe-eEEEECchhhhccCCCeeEEEECCCCCCCCc
Confidence 8999999999999988875 68899887755544332 33334443 3444455433456789999999743221110
Q ss_pred --------------------ChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 285 --------------------NDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 285 --------------------d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
....++.++.++|||||.+++....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 117 DAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred ccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 0245788999999999999986543
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-09 Score=96.83 Aligned_cols=103 Identities=27% Similarity=0.333 Sum_probs=69.5
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC-CCCC
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL-PYPS 267 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l-p~~d 267 (392)
+.+.+.++ .+. +|||+|||+|.++..+++. .++++|+++ .+++.+.++++..+ ..+.. .+ ++++
T Consensus 5 ~~i~~~i~--~~~--~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~-----~~i~~a~~~~~~~~--~~d~~~~l~~~~~ 73 (194)
T TIGR02081 5 ESILNLIP--PGS--RVLDLGCGDGELLALLRDEKQVRGYGIEIDQ-----DGVLACVARGVNVI--QGDLDEGLEAFPD 73 (194)
T ss_pred HHHHHhcC--CCC--EEEEeCCCCCHHHHHHHhccCCcEEEEeCCH-----HHHHHHHHcCCeEE--EEEhhhcccccCC
Confidence 34444444 333 8999999999999988764 457776654 45556666554322 22222 24 4778
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++||+|+++.+++|.. ++..+|+++.|++++ .+++.|..
T Consensus 74 ~sfD~Vi~~~~l~~~~-d~~~~l~e~~r~~~~---~ii~~p~~ 112 (194)
T TIGR02081 74 KSFDYVILSQTLQATR-NPEEILDEMLRVGRH---AIVSFPNF 112 (194)
T ss_pred CCcCEEEEhhHhHcCc-CHHHHHHHHHHhCCe---EEEEcCCh
Confidence 9999999999987665 889999999887654 45554443
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.2e-10 Score=103.55 Aligned_cols=99 Identities=24% Similarity=0.328 Sum_probs=78.5
Q ss_pred CCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC-CCCCccceEEecccc
Q 036725 204 GMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP-YPSRAFDMAHCSRCL 279 (392)
Q Consensus 204 ~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp-~~d~sFDlV~~~~~l 279 (392)
+..+++||+|||||-++..|..+ .++++ |+|++|++.|.++++-....+.... -++ ..++.||+|++..++
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a~~ltGv-----DiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl 198 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMADRLTGV-----DISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVL 198 (287)
T ss_pred CccceeeecccCcCcccHhHHHHHhhccCC-----chhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHH
Confidence 44679999999999999999886 67777 6678899999999864444444433 233 457889999999988
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 280 IPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 280 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
. +.-+.+.++.-+...|+|||.|.+++-
T Consensus 199 ~-YlG~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 199 P-YLGALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred H-hhcchhhHHHHHHHhcCCCceEEEEec
Confidence 5 444889999999999999999999863
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-09 Score=99.74 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=100.3
Q ss_pred CCCCCCCccHHHHHHHHHhh-CCC-CCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcE
Q 036725 179 GGGTQFPHGADAYIEELASV-IPM-DSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAV 254 (392)
Q Consensus 179 ~~g~~f~~~~~~~i~~l~~~-l~~-~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~ 254 (392)
|.|.||--..+++.+.+... ... ......++||||+|.|..+..|+.. +|.+.++| ..|+..-+++|...+
T Consensus 66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S-----~~Mr~rL~~kg~~vl 140 (265)
T PF05219_consen 66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEAS-----PPMRWRLSKKGFTVL 140 (265)
T ss_pred cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCC-----HHHHHHHHhCCCeEE
Confidence 46777755555554444321 111 1113458999999999999999886 78888655 457777778886432
Q ss_pred EEEeccccCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc--CCCchhhhhh-hcccChHhHHHHHH
Q 036725 255 IGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG--PLINWRTNYQ-AWQRPIKELEEEQR 331 (392)
Q Consensus 255 ~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~--p~~~~~~~~~-~w~~~~e~l~~~~~ 331 (392)
+..++.-.+.+||+|.|.++|. -..+|..+|++|++.|+|+|.+++.. |-..+.+... .+.++.+.+.-...
T Consensus 141 ----~~~~w~~~~~~fDvIscLNvLD-Rc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~ 215 (265)
T PF05219_consen 141 ----DIDDWQQTDFKFDVISCLNVLD-RCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGA 215 (265)
T ss_pred ----ehhhhhccCCceEEEeehhhhh-ccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCC
Confidence 2222332356899999998884 44488999999999999999999853 5555555443 46666666655444
Q ss_pred HHHHHHHHc
Q 036725 332 KIEEIAKLL 340 (392)
Q Consensus 332 ~i~~l~~~l 340 (392)
.+|+....+
T Consensus 216 ~~E~~v~~l 224 (265)
T PF05219_consen 216 TFEEQVSSL 224 (265)
T ss_pred cHHHHHHHH
Confidence 555554444
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.4e-09 Score=99.92 Aligned_cols=100 Identities=16% Similarity=0.285 Sum_probs=69.6
Q ss_pred CCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC----CCCCcc
Q 036725 200 PMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP----YPSRAF 270 (392)
Q Consensus 200 ~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp----~~d~sF 270 (392)
...++. +|||+|||+|.++..+++. .|+++|+++.+ .+.+++.+.++ +++..+..+...| ....+|
T Consensus 129 ~IkpG~--~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~-~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~v 203 (293)
T PTZ00146 129 PIKPGS--KVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRS-GRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMV 203 (293)
T ss_pred ccCCCC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHH-HHHHHHHhhhc--CCCEEEECCccChhhhhcccCCC
Confidence 334444 8999999999999999986 59999987542 23455566554 3444455554322 234689
Q ss_pred ceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 271 DMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 271 DlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
|+|++... .+++...++.++.++|||||+|++..
T Consensus 204 DvV~~Dva---~pdq~~il~~na~r~LKpGG~~vI~i 237 (293)
T PTZ00146 204 DVIFADVA---QPDQARIVALNAQYFLKNGGHFIISI 237 (293)
T ss_pred CEEEEeCC---CcchHHHHHHHHHHhccCCCEEEEEE
Confidence 99998753 22234567789999999999999963
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.7e-09 Score=102.48 Aligned_cols=116 Identities=18% Similarity=0.151 Sum_probs=79.3
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSR 268 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~ 268 (392)
...++++....++. +|||+|||+|.++..++.. .++++|+++.++..+.. .++..+++.+.+...+. ++|++++
T Consensus 171 a~~~~~l~~~~~g~--~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~-nl~~~g~~~i~~~~~D~~~l~~~~~ 247 (329)
T TIGR01177 171 ARAMVNLARVTEGD--RVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARI-NLEHYGIEDFFVKRGDATKLPLSSE 247 (329)
T ss_pred HHHHHHHhCCCCcC--EEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHH-HHHHhCCCCCeEEecchhcCCcccC
Confidence 34444444433443 8999999999998776554 78999988776665443 34445655544444454 8888889
Q ss_pred ccceEEeccccc-----c--cc-cChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 269 AFDMAHCSRCLI-----P--WS-ANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 269 sFDlV~~~~~l~-----~--~~-~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+||+|+++.-.. . .. .....++.++.|+|||||++++..|..
T Consensus 248 ~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 248 SVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 999999963211 0 01 113689999999999999999987654
|
This family is found exclusively in the Archaea. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.1e-09 Score=96.55 Aligned_cols=102 Identities=19% Similarity=0.286 Sum_probs=73.6
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCC-CCccceEEeccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYP-SRAFDMAHCSRCLIPW 282 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~-d~sFDlV~~~~~l~~~ 282 (392)
.+|||+|||+|.++..+++. .++++|+++..+..+..+.. ..+...+.+...+. .++.. .++||+|++..++++.
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~~ 125 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAK-KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHV 125 (224)
T ss_pred CeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH-HcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHhC
Confidence 48999999999999988765 68888877655444333222 23332344444443 45443 4789999999888666
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 283 SANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
. ++..++.++.++|+|||.++++.+..
T Consensus 126 ~-~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 126 P-DPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred C-CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 5 88999999999999999999876543
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-08 Score=94.44 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=73.0
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCC-CC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPY-PS 267 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~-~d 267 (392)
....+.+.+...++. +|||+|||+|.++..|++. .++++|.++..+..+.. ...+.++.++.+..++....+ +.
T Consensus 66 ~~~~l~~~l~~~~~~--~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~~~~ 142 (212)
T PRK00312 66 MVARMTELLELKPGD--RVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKR-RLKQLGLHNVSVRHGDGWKGWPAY 142 (212)
T ss_pred HHHHHHHhcCCCCCC--EEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHH-HHHHCCCCceEEEECCcccCCCcC
Confidence 445556666544443 8999999999999877765 68899887654443332 333345555666666653233 34
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++||+|++.....+ +..++.+.|+|||.+++...
T Consensus 143 ~~fD~I~~~~~~~~-------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 143 APFDRILVTAAAPE-------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCEEEEccCchh-------hhHHHHHhcCCCcEEEEEEc
Confidence 78999998765432 24678899999999999754
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-08 Score=91.12 Aligned_cols=102 Identities=20% Similarity=0.258 Sum_probs=69.9
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCc--EEEEeccccCCCCCCccceEEeccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPA--VIGVLGTIKLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~--~~~~~~~~~lp~~d~sFDlV~~~~~l~~~ 282 (392)
.+|||+|||+|.++..++++ +++++|+++..+..++. .....+... ..++..+...++++++||+|+++..+.+.
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~~~ 103 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKC-NAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYLPT 103 (188)
T ss_pred CEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHH-HHHHcCCCCcceEEEeccccccccccCceEEEECCCcCCC
Confidence 38999999999999999876 88999887765544433 333334332 34444554335566689999987544321
Q ss_pred c--------------------cChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 283 S--------------------ANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 283 ~--------------------~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
. .....+++++.++|||||.+++..+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 104 EEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred CchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 1 01246899999999999999887643
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.3e-08 Score=90.44 Aligned_cols=105 Identities=18% Similarity=0.180 Sum_probs=72.5
Q ss_pred HhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcC-CCcEEEEeccc-c-CCCCC
Q 036725 196 ASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERG-VPAVIGVLGTI-K-LPYPS 267 (392)
Q Consensus 196 ~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg-~~~~~~~~~~~-~-lp~~d 267 (392)
+..+....+. +|||+|||+|.++..++.. +++++|+++.++..++. .++..+ ...+.++.++. . ++..+
T Consensus 33 l~~l~~~~~~--~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~-n~~~~g~~~~v~~~~~d~~~~l~~~~ 109 (198)
T PRK00377 33 LSKLRLRKGD--MILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRR-NAEKFGVLNNIVLIKGEAPEILFTIN 109 (198)
T ss_pred HHHcCCCCcC--EEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCCeEEEEechhhhHhhcC
Confidence 4455544444 8999999999999877542 68999988765554333 344445 34555555554 3 33334
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+.||.|++... ..+...++.++.++|||||++++..
T Consensus 110 ~~~D~V~~~~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 110 EKFDRIFIGGG----SEKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CCCCEEEECCC----cccHHHHHHHHHHHcCCCcEEEEEe
Confidence 68999998532 2256789999999999999999864
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.6e-09 Score=91.59 Aligned_cols=120 Identities=20% Similarity=0.251 Sum_probs=78.6
Q ss_pred HHHHHHHhhCCC--CCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCc-EEEEeccc-
Q 036725 190 AYIEELASVIPM--DSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPA-VIGVLGTI- 261 (392)
Q Consensus 190 ~~i~~l~~~l~~--~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~~~~- 261 (392)
..++.+...+.. ......+|||+|||.|.+...|++. ..+|+|+++..+.-| ...|...+.++ +.+.+.+.
T Consensus 50 riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA-~niAe~~~~~n~I~f~q~DI~ 128 (227)
T KOG1271|consen 50 RIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELA-QNIAERDGFSNEIRFQQLDIT 128 (227)
T ss_pred HHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHH-HHHHHhcCCCcceeEEEeecc
Confidence 345555554431 1111228999999999999999987 477887776544332 23555567665 56666665
Q ss_pred cCCCCCCccceEEecccc-----cccc--cChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 262 KLPYPSRAFDMAHCSRCL-----IPWS--ANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 262 ~lp~~d~sFDlV~~~~~l-----~~~~--~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.-.+..+.||+|+--..+ ++-. ..+..++.-+.++|+|||+|+|++.+.
T Consensus 129 ~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 129 DPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred CCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 445778899999854333 1111 112468899999999999999987544
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=5e-08 Score=93.36 Aligned_cols=116 Identities=21% Similarity=0.233 Sum_probs=75.6
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP 264 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp 264 (392)
+.+++.+...+....+ .+|||+|||+|.++..++.. .++++|+++..+..+..... ......+.++.++...+
T Consensus 94 e~l~~~~~~~~~~~~~--~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~ 170 (275)
T PRK09328 94 EELVEWALEALLLKEP--LRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP 170 (275)
T ss_pred HHHHHHHHHhccccCC--CEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc
Confidence 5566666644443333 38999999999999988865 68899887765544433322 12334555666665444
Q ss_pred CCCCccceEEecccccccc-------------------------cChHHHHHHHHHhccCCeEEEEEc
Q 036725 265 YPSRAFDMAHCSRCLIPWS-------------------------ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~-------------------------~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+++++||+|+++.-..... .....++.++.++|+|||++++..
T Consensus 171 ~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 171 LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 5568999999863221100 012467888899999999999964
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.8e-09 Score=88.39 Aligned_cols=101 Identities=25% Similarity=0.422 Sum_probs=67.7
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cC--CCCCCccceEEecccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KL--PYPSRAFDMAHCSRCL 279 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~l--p~~d~sFDlV~~~~~l 279 (392)
.+|||+|||+|.++..+++. .++++|+++.....+.. .....+. ..+.+..++. .. ++++++||+|+++.-.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARR-NLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHH-HCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHH-HHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 38999999999999888865 78899887643333222 2223333 3455555555 44 3778999999998654
Q ss_pred ccccc-------ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 280 IPWSA-------NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 280 ~~~~~-------d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
..... ....+++++.++|||||.+++..|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 32211 125789999999999999999764
|
... |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-08 Score=90.57 Aligned_cols=112 Identities=17% Similarity=0.088 Sum_probs=74.7
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c-
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K- 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~- 262 (392)
......+.+.+....+. +|||+|||+|.++..+++. .++++|+++..+..++. .+.+.+...+.++.++. .
T Consensus 26 ~~v~~~l~~~l~~~~~~--~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~-n~~~~~~~~v~~~~~d~~~~ 102 (196)
T PRK07402 26 REVRLLLISQLRLEPDS--VLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRR-NCDRFGVKNVEVIEGSAPEC 102 (196)
T ss_pred HHHHHHHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCCeEEEECchHHH
Confidence 33444556666544443 8999999999999888643 79999998866555443 34445555556665554 2
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++.....+|.|+... ..+...++.++.++|+|||++++..+
T Consensus 103 ~~~~~~~~d~v~~~~-----~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 103 LAQLAPAPDRVCIEG-----GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HhhCCCCCCEEEEEC-----CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 222223467765431 22457899999999999999999764
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.1e-09 Score=93.88 Aligned_cols=97 Identities=21% Similarity=0.334 Sum_probs=59.5
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccc
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFD 271 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFD 271 (392)
+.+++.+...+. ...|-|+|||.+.++..+.+. .|...|+.+.. +. +...+...+|++++++|
T Consensus 61 d~iI~~l~~~~~-~~viaD~GCGdA~la~~~~~~~~V~SfDLva~n--------------~~-Vtacdia~vPL~~~svD 124 (219)
T PF05148_consen 61 DVIIEWLKKRPK-SLVIADFGCGDAKLAKAVPNKHKVHSFDLVAPN--------------PR-VTACDIANVPLEDESVD 124 (219)
T ss_dssp HHHHHHHCTS-T-TS-EEEES-TT-HHHHH--S---EEEEESS-SS--------------TT-EEES-TTS-S--TT-EE
T ss_pred HHHHHHHHhcCC-CEEEEECCCchHHHHHhcccCceEEEeeccCCC--------------CC-EEEecCccCcCCCCcee
Confidence 444444443332 248999999999999887654 68888875431 22 33555569999999999
Q ss_pred eEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 272 MAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 272 lV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++++...| ...+...++.|..|+|||||.|++..
T Consensus 125 v~VfcLSL--MGTn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 125 VAVFCLSL--MGTNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp EEEEES-----SS-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEhhh--hCCCcHHHHHHHHheeccCcEEEEEE
Confidence 99987666 34477899999999999999999975
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.7e-08 Score=90.89 Aligned_cols=108 Identities=17% Similarity=0.201 Sum_probs=80.2
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPS 267 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d 267 (392)
.....+.+.+...++. +|||||||+|+.++.|++. +|++++..+. +.+...+.-...|..++..+.++-..-++.
T Consensus 59 ~~vA~m~~~L~~~~g~--~VLEIGtGsGY~aAvla~l~~~V~siEr~~~-L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 59 HMVARMLQLLELKPGD--RVLEIGTGSGYQAAVLARLVGRVVSIERIEE-LAEQARRNLETLGYENVTVRHGDGSKGWPE 135 (209)
T ss_pred HHHHHHHHHhCCCCCC--eEEEECCCchHHHHHHHHHhCeEEEEEEcHH-HHHHHHHHHHHcCCCceEEEECCcccCCCC
Confidence 3566777777777776 8999999999999999987 7888876542 222222333456777788888888666665
Q ss_pred -CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 268 -RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 268 -~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..||.|+........+ ..+.+.||+||.+++-.
T Consensus 136 ~aPyD~I~Vtaaa~~vP-------~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 136 EAPYDRIIVTAAAPEVP-------EALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCcCEEEEeeccCCCC-------HHHHHhcccCCEEEEEE
Confidence 7899999886664444 55667799999999964
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.1e-08 Score=94.29 Aligned_cols=101 Identities=15% Similarity=0.162 Sum_probs=70.1
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccccCCCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~~lp~~d~sFDlV~~~~~l~~ 281 (392)
.+|||+|||+|.++..++++ .++++|+++..+..+.. .+...++. .+.++.++...++++++||+|+++--...
T Consensus 123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~-n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~~ 201 (284)
T TIGR03533 123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEI-NIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYVD 201 (284)
T ss_pred CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCCC
Confidence 38999999999999999875 68999888765555443 34445553 45566666533455678999998721110
Q ss_pred ----------cccC--------------hHHHHHHHHHhccCCeEEEEEcC
Q 036725 282 ----------WSAN--------------DGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 282 ----------~~~d--------------~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+..+ ...++.++.++|+|||++++...
T Consensus 202 ~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 202 AEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred ccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 0001 14678999999999999999754
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.6e-08 Score=92.69 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=78.1
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEecccc
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIK 262 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~~ 262 (392)
.+.+++.+.+.+....+ ..+|||+|||+|.++..++.. .++++|+++..+..+.. .+...++. .+.++.++..
T Consensus 98 te~lv~~~l~~~~~~~~-~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~-n~~~~~~~~~v~~~~~d~~ 175 (284)
T TIGR00536 98 TEELVEKALASLISQNP-ILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEE-NAEKNQLEHRVEFIQSNLF 175 (284)
T ss_pred cHHHHHHHHHHhhhcCC-CCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchh
Confidence 35566666554421121 138999999999999998864 68999887765554443 34444554 3666666664
Q ss_pred CCCCCCccceEEecccccc------------ccc------------ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 263 LPYPSRAFDMAHCSRCLIP------------WSA------------NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~------------~~~------------d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.++++++||+|+++.-.+. +.+ ....++.++.+.|+|||++++...
T Consensus 176 ~~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g 245 (284)
T TIGR00536 176 EPLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG 245 (284)
T ss_pred ccCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence 4555668999999721110 100 124688999999999999999764
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.7e-08 Score=96.95 Aligned_cols=101 Identities=14% Similarity=0.234 Sum_probs=65.5
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHc-CCCcEEEEeccc-c-CCCCCCc----cceEE
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALER-GVPAVIGVLGTI-K-LPYPSRA----FDMAH 274 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~r-g~~~~~~~~~~~-~-lp~~d~s----FDlV~ 274 (392)
.+|||+|||+|..+..|+++ .++++|+++.++..++.+..... +++ +..+.++. + ++++... ..+++
T Consensus 65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~-v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLE-VHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCce-EEEEEEcccchhhhhcccccCCeEEEE
Confidence 38999999999999888765 68888888776666555443322 222 33344554 2 3443332 23444
Q ss_pred eccccccccc-ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 275 CSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 275 ~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+...+.++.+ +...+|+++.++|+|||.|++...
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 4444444432 236899999999999999999653
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.8e-08 Score=92.42 Aligned_cols=105 Identities=17% Similarity=0.237 Sum_probs=72.9
Q ss_pred cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC--CCCCCccceEEeccc
Q 036725 206 VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL--PYPSRAFDMAHCSRC 278 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l--p~~d~sFDlV~~~~~ 278 (392)
..+|||+|||+|..+..++++ .+++|++.+.+...++...+...--..+.+..++. .+ ...-.+||+|+|+--
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 348999999999999999987 68889887665555444444322234455566665 22 233457999999843
Q ss_pred ccccc-----------------cChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 279 LIPWS-----------------ANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 279 l~~~~-----------------~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
...-. -+.+.+++-..++|||||++.++.++.
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e 173 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE 173 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH
Confidence 32111 123588999999999999999987655
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-08 Score=93.22 Aligned_cols=109 Identities=19% Similarity=0.257 Sum_probs=74.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l 263 (392)
-.....+++.+...++. +|||||||+|++++.|+.. .|+++|..+. +.+...+.....+..++.++.++...
T Consensus 58 P~~~a~~l~~L~l~pg~--~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~-l~~~A~~~l~~~~~~nv~~~~gdg~~ 134 (209)
T PF01135_consen 58 PSMVARMLEALDLKPGD--RVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPE-LAERARRNLARLGIDNVEVVVGDGSE 134 (209)
T ss_dssp HHHHHHHHHHTTC-TT---EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHH-HHHHHHHHHHHHTTHSEEEEES-GGG
T ss_pred HHHHHHHHHHHhcCCCC--EEEEecCCCcHHHHHHHHhcCccceEEEECccHH-HHHHHHHHHHHhccCceeEEEcchhh
Confidence 44667778888877776 9999999999999998875 3778888763 33333334444577777778877654
Q ss_pred CCC-CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 PYP-SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 p~~-d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.++ ...||.|++.......+ ..+.+.||+||++++-.
T Consensus 135 g~~~~apfD~I~v~~a~~~ip-------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 135 GWPEEAPFDRIIVTAAVPEIP-------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp TTGGG-SEEEEEESSBBSS---------HHHHHTEEEEEEEEEEE
T ss_pred ccccCCCcCEEEEeeccchHH-------HHHHHhcCCCcEEEEEE
Confidence 443 46899999987664333 56777899999999954
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-08 Score=78.90 Aligned_cols=98 Identities=26% Similarity=0.338 Sum_probs=68.3
Q ss_pred eEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC-CCCCccceEEeccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP-YPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp-~~d~sFDlV~~~~~l~~~ 282 (392)
++||+|||.|.++..+++. .++++|.++.....+.. ...........+...+. ... ...++||+|++..++.++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 4899999999999988873 78888876543332221 11122333444455554 333 246789999999887553
Q ss_pred ccChHHHHHHHHHhccCCeEEEEE
Q 036725 283 SANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
......+++.+.+.|+|||++++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 446689999999999999999985
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.1e-09 Score=94.95 Aligned_cols=120 Identities=20% Similarity=0.320 Sum_probs=81.2
Q ss_pred ccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC------CcEEEeCCccChHHHHHHHHHHcC-------CC
Q 036725 186 HGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK------NVITMSFAPRDSHEAQVQFALERG-------VP 252 (392)
Q Consensus 186 ~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~------~v~~vd~s~~d~~~a~~~~a~~rg-------~~ 252 (392)
....-+...+-++++.......+||+||||.|...-.+++- .+.+.|+++. +++..+++. -.
T Consensus 52 kdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~-----Ai~~vk~~~~~~e~~~~a 126 (264)
T KOG2361|consen 52 KDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR-----AIELVKKSSGYDESRVEA 126 (264)
T ss_pred chhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChH-----HHHHHHhccccchhhhcc
Confidence 33344555566666544433337999999999888888764 5778877765 344444321 11
Q ss_pred cEEEEeccc-cCCCCCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 253 AVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 253 ~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.+.-...+. .-|.+.+++|+|++.++|....++. ..++.++.++|||||.+++-+...
T Consensus 127 fv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 127 FVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred cceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 122222222 4567789999999999997776555 689999999999999999976444
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.2e-08 Score=92.11 Aligned_cols=96 Identities=19% Similarity=0.287 Sum_probs=69.9
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccce
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDM 272 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDl 272 (392)
+.+++.+...++. ..|-|+|||.+.++.. ....|..+|+.+. ...+...+..++|.+|+|.|+
T Consensus 169 d~ii~~ik~r~~~-~vIaD~GCGEakiA~~-~~~kV~SfDL~a~---------------~~~V~~cDm~~vPl~d~svDv 231 (325)
T KOG3045|consen 169 DVIIRKIKRRPKN-IVIADFGCGEAKIASS-ERHKVHSFDLVAV---------------NERVIACDMRNVPLEDESVDV 231 (325)
T ss_pred HHHHHHHHhCcCc-eEEEecccchhhhhhc-cccceeeeeeecC---------------CCceeeccccCCcCccCcccE
Confidence 4455555544443 3799999999987761 1127888887543 222345555689999999999
Q ss_pred EEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 273 AHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 273 V~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+++...| +..+...++.|++|+||+||.|++..
T Consensus 232 aV~CLSL--Mgtn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 232 AVFCLSL--MGTNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred EEeeHhh--hcccHHHHHHHHHHHhccCceEEEEe
Confidence 9975444 45588899999999999999999974
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.1e-09 Score=97.16 Aligned_cols=95 Identities=20% Similarity=0.276 Sum_probs=77.1
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHc---CCCcEEEEeccccCCCCCCccceEEeccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALER---GVPAVIGVLGTIKLPYPSRAFDMAHCSRCLI 280 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~r---g~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~ 280 (392)
..++|||||.|.....|..+ +++-+|.+. .|++.++.. ++....++.+...|+|.+++||+|+++..+
T Consensus 74 p~a~diGcs~G~v~rhl~~e~vekli~~DtS~-----~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlsl- 147 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSY-----DMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSL- 147 (325)
T ss_pred cceeecccchhhhhHHHHhcchhheeeeecch-----HHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhh-
Confidence 37999999999999999987 566776554 455555543 444455566666999999999999999877
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 281 PWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 281 ~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
||..+....+.++...|||+|.|+.+.
T Consensus 148 HW~NdLPg~m~~ck~~lKPDg~Fiasm 174 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALKPDGLFIASM 174 (325)
T ss_pred hhhccCchHHHHHHHhcCCCccchhHH
Confidence 899888999999999999999999853
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-07 Score=94.36 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=74.8
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI- 261 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~- 261 (392)
..+.+++.+.+.+. .+ .+|||+|||+|.++..++.. .++++|+++.++..++. .+...+. .+.++.++.
T Consensus 237 eTE~LVe~aL~~l~--~~--~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~Are-Na~~~g~-rV~fi~gDl~ 310 (423)
T PRK14966 237 ETEHLVEAVLARLP--EN--GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARK-NAADLGA-RVEFAHGSWF 310 (423)
T ss_pred cHHHHHHHhhhccC--CC--CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCC-cEEEEEcchh
Confidence 34566676666554 22 28999999999999888753 68999988766655444 3334454 345555554
Q ss_pred cCCCC-CCccceEEecccccccc--------------------cC----hHHHHHHHHHhccCCeEEEEEc
Q 036725 262 KLPYP-SRAFDMAHCSRCLIPWS--------------------AN----DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 262 ~lp~~-d~sFDlV~~~~~l~~~~--------------------~d----~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
...++ .++||+|+|+.-.++-. ++ ...++.++.+.|+|||.+++..
T Consensus 311 e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 311 DTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred ccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 32232 46899999975322110 00 1267777889999999999865
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.5e-08 Score=91.22 Aligned_cols=100 Identities=18% Similarity=0.129 Sum_probs=72.7
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHH------------HHHcCCCcEEEEeccc-cCCCC---CC
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQF------------ALERGVPAVIGVLGTI-KLPYP---SR 268 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~------------a~~rg~~~~~~~~~~~-~lp~~---d~ 268 (392)
.+||+.|||.|.-+.+|+++ .|+|+|+|+..+.....+. ...++.. +.+..++. .++.. .+
T Consensus 45 ~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~-i~~~~gD~f~l~~~~~~~~ 123 (226)
T PRK13256 45 SVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDD-IEIYVADIFNLPKIANNLP 123 (226)
T ss_pred CeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCc-eEEEEccCcCCCccccccC
Confidence 38999999999999999998 8999988876554432211 0012323 33444444 66532 26
Q ss_pred ccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 269 AFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.||+|+-..++++++++. .++.+.+.++|+|||.+++..
T Consensus 124 ~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 124 VFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred CcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 899999888888887665 689999999999999998864
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=92.84 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=69.3
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccccCCCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~ 281 (392)
.+|||+|||+|.++..++.. .++++|+++..+..++. .+...++ ..+.++.++...++++++||+|+++.-.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~-n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~ 213 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEI-NIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD 213 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence 38999999999999998865 68999888765555443 3444454 345666666533445678999998731110
Q ss_pred ------------ccc------------ChHHHHHHHHHhccCCeEEEEEc
Q 036725 282 ------------WSA------------NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 282 ------------~~~------------d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+.+ ....++.++.++|+|||++++..
T Consensus 214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 000 01467899999999999999965
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.9e-08 Score=90.46 Aligned_cols=116 Identities=19% Similarity=0.221 Sum_probs=80.5
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc-ccCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT-IKLPY 265 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~-~~lp~ 265 (392)
.+..++.++++.+..+...-|||||||+|..+..|.+. ..+++|+|+.|++.++ ++.+..-....+. .-+||
T Consensus 34 ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~-----~~e~egdlil~DMG~Glpf 108 (270)
T KOG1541|consen 34 AEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAV-----ERELEGDLILCDMGEGLPF 108 (270)
T ss_pred HHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHH-----HhhhhcCeeeeecCCCCCC
Confidence 34556666666655544558999999999999999887 6788887776555544 3333322223333 38999
Q ss_pred CCCccceEEecccccccc-------cCh----HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 266 PSRAFDMAHCSRCLIPWS-------AND----GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~-------~d~----~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+.++||.|++..++ .|. .++ ..++..++.+|++|+..++--.+.
T Consensus 109 rpGtFDg~ISISAv-QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 109 RPGTFDGVISISAV-QWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred CCCccceEEEeeee-eeecccCccccChHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 99999999987555 453 122 256778999999999999965333
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.2e-08 Score=95.62 Aligned_cols=107 Identities=17% Similarity=0.171 Sum_probs=73.8
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL 263 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l 263 (392)
.....+.+.+...++. +|||||||+|.++..+++. .|+++|+++..+..++ +.+.+.+..++.++.++. ..
T Consensus 67 ~l~a~ll~~L~i~~g~--~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar-~~l~~~g~~nV~~i~gD~~~~ 143 (322)
T PRK13943 67 SLMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK-RNVRRLGIENVIFVCGDGYYG 143 (322)
T ss_pred HHHHHHHHhcCCCCCC--EEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEeCChhhc
Confidence 3455566666544444 8999999999999999874 3889988775544433 334445666666666665 44
Q ss_pred CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 264 PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
+...++||+|++...+.+ ....+.+.|+|||.+++.
T Consensus 144 ~~~~~~fD~Ii~~~g~~~-------ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 144 VPEFAPYDVIFVTVGVDE-------VPETWFTQLKEGGRVIVP 179 (322)
T ss_pred ccccCCccEEEECCchHH-------hHHHHHHhcCCCCEEEEE
Confidence 444578999998754422 234577899999998884
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.5e-08 Score=87.65 Aligned_cols=88 Identities=19% Similarity=0.317 Sum_probs=60.3
Q ss_pred eEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC--------CCCCccceE
Q 036725 208 TALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP--------YPSRAFDMA 273 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp--------~~d~sFDlV 273 (392)
+|||+|||+|.++..++++ .++++|+++.. ..+.+.+...+. ..+ +++++||+|
T Consensus 35 ~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V 102 (188)
T TIGR00438 35 TVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------------PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVV 102 (188)
T ss_pred EEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------------cCCCceEEEeeCCChhHHHHHHHHhCCCCccEE
Confidence 8999999999998888764 48999998742 112233333332 221 457789999
Q ss_pred Eeccccc---ccccC-------hHHHHHHHHHhccCCeEEEEEc
Q 036725 274 HCSRCLI---PWSAN-------DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 274 ~~~~~l~---~~~~d-------~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++..+.+ .|..+ ...++.++.++|+|||++++..
T Consensus 103 ~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 103 MSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred EcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9864321 11111 2578999999999999999964
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.8e-08 Score=97.85 Aligned_cols=120 Identities=22% Similarity=0.317 Sum_probs=74.8
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHc------C----CCcEEEE
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALER------G----VPAVIGV 257 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~r------g----~~~~~~~ 257 (392)
+|......+.... ...+|||+|||-|.-....... .++|+|++...+.++..+...-+ . ..+..+.
T Consensus 49 LI~~~~~~~~~~~-~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~ 127 (331)
T PF03291_consen 49 LIQKYAKKVKQNR-PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIA 127 (331)
T ss_dssp HHHHHCHCCCCTT-TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEE
T ss_pred HHHHHHHhhhccC-CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheec
Confidence 4444444333222 3458999999988766666555 78999998877777766652211 1 1233333
Q ss_pred eccc------cCCCCCCccceEEecccccccccCh---HHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 258 LGTI------KLPYPSRAFDMAHCSRCLIPWSAND---GMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 258 ~~~~------~lp~~d~sFDlV~~~~~l~~~~~d~---~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
.+.. .++.....||+|-|.+++|...... ..+|..+.+.|||||+|+.+.|..+
T Consensus 128 ~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 128 ADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp STTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 3332 1222235999999999997665444 4699999999999999999987663
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.2e-08 Score=93.31 Aligned_cols=104 Identities=19% Similarity=0.289 Sum_probs=75.7
Q ss_pred eEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcC------CCcEEEEeccc------cCCCCCCccce
Q 036725 208 TALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERG------VPAVIGVLGTI------KLPYPSRAFDM 272 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg------~~~~~~~~~~~------~lp~~d~sFDl 272 (392)
.+||+|||-|.-+....+. .++++|++...+..++.+.-.-.+ .+++++..+.. .+++++.+||+
T Consensus 120 ~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDi 199 (389)
T KOG1975|consen 120 DVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDI 199 (389)
T ss_pred ccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcce
Confidence 7999999999777666655 789999987777666655433221 13455544432 45667777999
Q ss_pred EEecccccccccCh---HHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 273 AHCSRCLIPWSAND---GMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 273 V~~~~~l~~~~~d~---~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
|-|.+++|.-.... ..+|.++.+.|||||+|+-+.|..+
T Consensus 200 vScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 200 VSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred eeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 99999985433222 5799999999999999999998774
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.6e-07 Score=97.77 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=67.5
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccccCCCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~ 281 (392)
.+|||+|||+|.++..++.. .++++|+++..+..+.. .+...++ ..+.++.++...++++++||+|+++.-.+.
T Consensus 140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~-N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKS-NAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHH-HHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 48999999999999888753 79999988765555443 3344454 345555555433445678999999632211
Q ss_pred cc---------------------cC----hHHHHHHHHHhccCCeEEEEEc
Q 036725 282 WS---------------------AN----DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 282 ~~---------------------~d----~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.. .+ ...++.++.++|+|||.+++..
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi 269 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI 269 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 00 00 1246788999999999999964
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.8e-07 Score=80.59 Aligned_cols=110 Identities=20% Similarity=0.108 Sum_probs=81.1
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc--c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~--~ 262 (392)
++.....+..+...+++ .++|||||+|+.+..++.. +++++|-++..+. ...+.+.+.+++++..+.++. .
T Consensus 20 ~EIRal~ls~L~~~~g~--~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~-~~~~N~~~fg~~n~~vv~g~Ap~~ 96 (187)
T COG2242 20 EEIRALTLSKLRPRPGD--RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALE-LIERNAARFGVDNLEVVEGDAPEA 96 (187)
T ss_pred HHHHHHHHHhhCCCCCC--EEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHH-HHHHHHHHhCCCcEEEEeccchHh
Confidence 34444555666666665 8999999999999998832 8899987654332 233455566789999898887 3
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
|+-.+ +||.|+.... ...+.+|+.+...|||||.+++..
T Consensus 97 L~~~~-~~daiFIGGg-----~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 97 LPDLP-SPDAIFIGGG-----GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred hcCCC-CCCEEEECCC-----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 43222 7999998754 266789999999999999999964
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=3e-07 Score=88.94 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=68.7
Q ss_pred CcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHc----CCCcEEEEeccc--cCCCCCCccceEE
Q 036725 205 MVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALER----GVPAVIGVLGTI--KLPYPSRAFDMAH 274 (392)
Q Consensus 205 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~r----g~~~~~~~~~~~--~lp~~d~sFDlV~ 274 (392)
..++||+||||.|..+..++++ +|+++|+++..+..+...+.... .-+.+.++.++. -+...+++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 3458999999999999998876 58888887754444333222111 124455555554 2333567899999
Q ss_pred ecccccccccC----hHHHHHHHHHhccCCeEEEEEc
Q 036725 275 CSRCLIPWSAN----DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 275 ~~~~l~~~~~d----~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+... .++... ...+++++.+.|+|||++++..
T Consensus 156 ~D~~-dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 156 VDST-DPVGPAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred ECCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 8643 233222 1577899999999999999854
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.3e-08 Score=87.22 Aligned_cols=162 Identities=20% Similarity=0.294 Sum_probs=94.8
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--C--cEEEeCCccChHHHHHHHHHHcCCCcE----EEEecc
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--N--VITMSFAPRDSHEAQVQFALERGVPAV----IGVLGT 260 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~--v~~vd~s~~d~~~a~~~~a~~rg~~~~----~~~~~~ 260 (392)
+.+.+.|.+.++.. +. +|||||+|+|..+.+++++ + ....|.++.-. ......+.+.+.+++ ......
T Consensus 12 ~pIl~vL~~~l~~~-~~--~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~-~sI~a~~~~~~~~Nv~~P~~lDv~~ 87 (204)
T PF06080_consen 12 DPILEVLKQYLPDS-GT--RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLR-PSIRAWIAEAGLPNVRPPLALDVSA 87 (204)
T ss_pred hHHHHHHHHHhCcc-Cc--eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHH-hhHHHHHHhcCCcccCCCeEeecCC
Confidence 44666666666532 21 5999999999999999987 2 22333322110 112223344444332 221111
Q ss_pred ccCCC------CCCccceEEeccccccccc--ChHHHHHHHHHhccCCeEEEEEcCCCchh-------hhhhhcccC---
Q 036725 261 IKLPY------PSRAFDMAHCSRCLIPWSA--NDGMYMMEIDRVLRPGGYWVLSGPLINWR-------TNYQAWQRP--- 322 (392)
Q Consensus 261 ~~lp~------~d~sFDlV~~~~~l~~~~~--d~~~~L~ei~RvLkPGG~lvl~~p~~~~~-------~~~~~w~~~--- 322 (392)
...|. ..++||+|+|..++ |+.+ ..+.+++.+.++|++||.|++.+|...-. ..++.|.+.
T Consensus 88 ~~w~~~~~~~~~~~~~D~i~~~N~l-HI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp 166 (204)
T PF06080_consen 88 PPWPWELPAPLSPESFDAIFCINML-HISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDP 166 (204)
T ss_pred CCCccccccccCCCCcceeeehhHH-HhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCC
Confidence 12333 35699999999887 4432 23789999999999999999988765321 122333222
Q ss_pred hHhHHHHHHHHHHHHHHcCceecce-----eccEEEEEe
Q 036725 323 IKELEEEQRKIEEIAKLLCWEKKHE-----KGETAIWQK 356 (392)
Q Consensus 323 ~e~l~~~~~~i~~l~~~l~W~~~~~-----~~~~~iw~K 356 (392)
.-.+++. +.++.++....++.... .+.+.||+|
T Consensus 167 ~~GiRD~-e~v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 167 EWGIRDI-EDVEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CcCccCH-HHHHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 2344444 35777777776654433 234777776
|
The function of this family is unknown. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.1e-08 Score=87.64 Aligned_cols=77 Identities=21% Similarity=0.245 Sum_probs=55.0
Q ss_pred EEeCCccChHHHHHHHHHHc--CCCcEEEEeccc-cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 230 TMSFAPRDSHEAQVQFALER--GVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 230 ~vd~s~~d~~~a~~~~a~~r--g~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
|+|+++.++..+..+...+. +..++.++.++. .+|+++++||+|++..+++++. +...+|+|+.|+|||||.|++.
T Consensus 2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~-d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV-DRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC-CHHHHHHHHHHHcCcCeEEEEE
Confidence 56666555544432221111 123455555555 8999999999999998886665 8999999999999999999886
Q ss_pred c
Q 036725 307 G 307 (392)
Q Consensus 307 ~ 307 (392)
.
T Consensus 81 d 81 (160)
T PLN02232 81 D 81 (160)
T ss_pred E
Confidence 4
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.8e-07 Score=84.04 Aligned_cols=108 Identities=19% Similarity=0.287 Sum_probs=78.9
Q ss_pred HHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCc-EEEEeccccCCCCC
Q 036725 194 ELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPA-VIGVLGTIKLPYPS 267 (392)
Q Consensus 194 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~~~~~lp~~d 267 (392)
.|...+...++. +|||.|.|+|.++++|+.. +++++++-+. ..+-+.+..++.++.+ +....++..-....
T Consensus 85 ~I~~~~gi~pg~--rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d-~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 85 YIVARLGISPGS--RVLEAGTGSGALTAYLARAVGPEGHVTTYEIRED-FAKTARENLSEFGLGDRVTLKLGDVREGIDE 161 (256)
T ss_pred HHHHHcCCCCCC--EEEEcccCchHHHHHHHHhhCCCceEEEEEecHH-HHHHHHHHHHHhccccceEEEeccccccccc
Confidence 445556666666 9999999999999999963 7888877653 3333333334445544 66677776444445
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+.||.|+.. .+ ++..++..+.++|+|||.+++..|..
T Consensus 162 ~~vDav~LD-----mp-~PW~~le~~~~~Lkpgg~~~~y~P~v 198 (256)
T COG2519 162 EDVDAVFLD-----LP-DPWNVLEHVSDALKPGGVVVVYSPTV 198 (256)
T ss_pred cccCEEEEc-----CC-ChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence 589999864 33 78889999999999999999988876
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-07 Score=87.94 Aligned_cols=103 Identities=21% Similarity=0.299 Sum_probs=75.2
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCC
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSR 268 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~ 268 (392)
..+....... ..++|||||+|.|.++..++++ +++.+|+- ..++.+.+ .+.+.++.++..-++|.
T Consensus 90 ~~~~~~~d~~--~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp------~v~~~~~~--~~rv~~~~gd~f~~~P~- 158 (241)
T PF00891_consen 90 DILLEAFDFS--GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLP------EVIEQAKE--ADRVEFVPGDFFDPLPV- 158 (241)
T ss_dssp HHHHHHSTTT--TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-H------HHHCCHHH--TTTEEEEES-TTTCCSS-
T ss_pred hhhhcccccc--CccEEEeccCcchHHHHHHHHHCCCCcceeeccH------hhhhcccc--ccccccccccHHhhhcc-
Confidence 3444455433 3358999999999999999987 56666651 23334444 56778888887667766
Q ss_pred ccceEEecccccccccCh-HHHHHHHHHhccCC--eEEEEEc
Q 036725 269 AFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPG--GYWVLSG 307 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPG--G~lvl~~ 307 (392)
+|+|+..+++|.|.++. ..+|+.+++.|+|| |.+++..
T Consensus 159 -~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e 199 (241)
T PF00891_consen 159 -ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIE 199 (241)
T ss_dssp -ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred -ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 99999999999998555 68999999999999 9999965
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.6e-07 Score=88.15 Aligned_cols=114 Identities=23% Similarity=0.290 Sum_probs=76.3
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP 264 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp 264 (392)
+.+++.+...+..... +|||+|||+|..+..++.+ .|+++|+++..+.-+ .+.|...++..+..+.++.--+
T Consensus 97 e~Lve~~l~~~~~~~~---~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A-~~Na~~~~l~~~~~~~~dlf~~ 172 (280)
T COG2890 97 ELLVEAALALLLQLDK---RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALA-RENAERNGLVRVLVVQSDLFEP 172 (280)
T ss_pred HHHHHHHHHhhhhcCC---cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHH-HHHHHHcCCccEEEEeeecccc
Confidence 5566665533332222 6999999999999999886 789999988544443 3455666654445555544334
Q ss_pred CCCCccceEEecccccccc-----c-----Ch--------------HHHHHHHHHhccCCeEEEEEc
Q 036725 265 YPSRAFDMAHCSRCLIPWS-----A-----ND--------------GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~-----~-----d~--------------~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.. ++||+|+++--.++-. + ++ ..++.++.+.|+|||.+++..
T Consensus 173 ~~-~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~ 238 (280)
T COG2890 173 LR-GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI 238 (280)
T ss_pred cC-CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE
Confidence 43 3899999984332221 0 11 278899999999999999965
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.3e-07 Score=84.36 Aligned_cols=117 Identities=20% Similarity=0.234 Sum_probs=72.8
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI- 261 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~- 261 (392)
..+.+++.+...+....+ ..+|||+|||+|.++..+++. .++++|+++..+..++. .+...+. .+..++.
T Consensus 69 ~Te~Lv~~~l~~~~~~~~-~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~-N~~~~~~---~~~~~D~~ 143 (251)
T TIGR03704 69 RTEFLVDEAAALARPRSG-TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARR-NLADAGG---TVHEGDLY 143 (251)
T ss_pred cHHHHHHHHHHhhcccCC-CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCC---EEEEeech
Confidence 345667766665542222 237999999999999988764 68999887765554443 2333332 2333443
Q ss_pred c-CCC-CCCccceEEecccccccc---------------------cC----hHHHHHHHHHhccCCeEEEEEcC
Q 036725 262 K-LPY-PSRAFDMAHCSRCLIPWS---------------------AN----DGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 262 ~-lp~-~d~sFDlV~~~~~l~~~~---------------------~d----~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
. ++- ..++||+|+++--..+.. .+ ...++..+.++|+|||.+++...
T Consensus 144 ~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 144 DALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred hhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 2 221 135799999874222110 01 13677888899999999999753
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-07 Score=84.26 Aligned_cols=105 Identities=13% Similarity=0.168 Sum_probs=66.5
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCc
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRA 269 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~s 269 (392)
+.+++.+....+. +|||+|||+|.++..++++ .++++|+++..+...+.... ..+++.++.++. .+++++.+
T Consensus 3 ~~i~~~~~~~~~~--~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~---~~~~v~ii~~D~~~~~~~~~~ 77 (169)
T smart00650 3 DKIVRAANLRPGD--TVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFA---AADNLTVIHGDALKFDLPKLQ 77 (169)
T ss_pred HHHHHhcCCCCcC--EEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhc---cCCCEEEEECchhcCCccccC
Confidence 4555555544443 8999999999999999987 78999887644333322211 123455566665 77887778
Q ss_pred cceEEecccccccccChHHHHHHHHHh--ccCCeEEEEE
Q 036725 270 FDMAHCSRCLIPWSANDGMYMMEIDRV--LRPGGYWVLS 306 (392)
Q Consensus 270 FDlV~~~~~l~~~~~d~~~~L~ei~Rv--LkPGG~lvl~ 306 (392)
||.|+++.-+ +. ....+..+.+- +.++|++++.
T Consensus 78 ~d~vi~n~Py-~~---~~~~i~~~l~~~~~~~~~~l~~q 112 (169)
T smart00650 78 PYKVVGNLPY-NI---STPILFKLLEEPPAFRDAVLMVQ 112 (169)
T ss_pred CCEEEECCCc-cc---HHHHHHHHHhcCCCcceEEEEEE
Confidence 9999987433 22 12333333322 4578888884
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-07 Score=96.45 Aligned_cols=102 Identities=17% Similarity=0.284 Sum_probs=71.5
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEec----
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCS---- 276 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~---- 276 (392)
.+|||+|||+|..+..+++. .++++|+++.++..+. +.+.+.|+.++.++.++. .++ ++++||+|++.
T Consensus 252 ~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~-~~~~~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~D~Pcs 329 (445)
T PRK14904 252 STVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIR-SHASALGITIIETIEGDARSFS-PEEQPDAILLDAPCT 329 (445)
T ss_pred CEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-HHHHHhCCCeEEEEeCcccccc-cCCCCCEEEEcCCCC
Confidence 38999999999988777653 6999999887665543 345556776666666665 443 56789999952
Q ss_pred c--cc-----cccccC----------hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 277 R--CL-----IPWSAN----------DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 277 ~--~l-----~~~~~d----------~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
. .+ ..|... ...+|.++.++|||||++++++...
T Consensus 330 g~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 330 GTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 1 11 011111 1368999999999999999987655
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.8e-07 Score=93.37 Aligned_cols=113 Identities=14% Similarity=0.141 Sum_probs=76.1
Q ss_pred HHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC----
Q 036725 195 LASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP---- 264 (392)
Q Consensus 195 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp---- 264 (392)
+...+...++. +|||+|||+|..+..+++. .|+++|+++..+...+ +.+...|+.++.++..+. .++
T Consensus 244 ~~~~l~~~~g~--~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~-~n~~r~g~~~v~~~~~D~~~~~~~~~ 320 (434)
T PRK14901 244 VAPLLDPQPGE--VILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQ-ENAQRLGLKSIKILAADSRNLLELKP 320 (434)
T ss_pred HHHHhCCCCcC--EEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHH-HHHHHcCCCeEEEEeCChhhcccccc
Confidence 33444444444 8999999999999888764 5899988776554433 344556776666666555 444
Q ss_pred CCCCccceEEecc------cccccc-----cC----------hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 265 YPSRAFDMAHCSR------CLIPWS-----AN----------DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 265 ~~d~sFDlV~~~~------~l~~~~-----~d----------~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+..++||.|++.. ++.+-+ .. ...+|.++.++|||||++++++...
T Consensus 321 ~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 321 QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4467899999631 111111 00 2478999999999999999987554
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.7e-07 Score=86.56 Aligned_cols=102 Identities=12% Similarity=0.105 Sum_probs=65.6
Q ss_pred cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc--cCCCCCCccceEEecccc
Q 036725 206 VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~--~lp~~d~sFDlV~~~~~l 279 (392)
.++|||||||.|.++..+++. .++++|+++..+..+...+......+.+.++.++. -+.-..++||+|++...-
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~ 146 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFD 146 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCC
Confidence 358999999999999988765 68899886654333322221111124455565654 223224689999975211
Q ss_pred -ccccc--ChHHHHHHHHHhccCCeEEEEEc
Q 036725 280 -IPWSA--NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 280 -~~~~~--d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..... ....+++++.++|+|||.+++..
T Consensus 147 ~~~~~~~l~t~efl~~~~~~L~pgGvlvin~ 177 (262)
T PRK04457 147 GEGIIDALCTQPFFDDCRNALSSDGIFVVNL 177 (262)
T ss_pred CCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence 11111 12689999999999999999953
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.9e-07 Score=83.32 Aligned_cols=98 Identities=26% Similarity=0.421 Sum_probs=71.2
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc--C--CCCCCccceEEecccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK--L--PYPSRAFDMAHCSRCL 279 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~--l--p~~d~sFDlV~~~~~l 279 (392)
.+||||||.|.+...++.+ +++|+|+...-+..+ .+.+.+.+++++.++.++.. + -++++++|.|+..+-
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a-~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP- 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKA-LRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP- 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHH-HHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHH-HHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC-
Confidence 7999999999999999876 899999977555544 34555668888888887652 2 256799999998643
Q ss_pred cccccCh--------HHHHHHHHHhccCCeEEEEEc
Q 036725 280 IPWSAND--------GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 280 ~~~~~d~--------~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+|+... ..+|.++.++|+|||.+.+.+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 3565322 489999999999999999975
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.9e-07 Score=91.81 Aligned_cols=111 Identities=16% Similarity=0.261 Sum_probs=72.9
Q ss_pred HhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC--CCCC
Q 036725 196 ASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP--YPSR 268 (392)
Q Consensus 196 ~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp--~~d~ 268 (392)
+..+...++. +|||+|||+|..+..++++ .|+++|+++..+..++ +.+...|+.. .++.++. .++ ++.+
T Consensus 237 ~~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~-~n~~~~g~~~-~~~~~D~~~~~~~~~~~ 312 (427)
T PRK10901 237 ATLLAPQNGE--RVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVR-ENLQRLGLKA-TVIVGDARDPAQWWDGQ 312 (427)
T ss_pred HHHcCCCCCC--EEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHH-HHHHHcCCCe-EEEEcCcccchhhcccC
Confidence 3344444443 8999999999999888875 6889988876555543 3444456554 3444444 433 3467
Q ss_pred ccceEEeccc-c----------cccccC----------hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 269 AFDMAHCSRC-L----------IPWSAN----------DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 269 sFDlV~~~~~-l----------~~~~~d----------~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+||.|++..- . ..|... ...+|.++.++|||||++++++...
T Consensus 313 ~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 313 PFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred CCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 8999995321 0 012111 1368999999999999999987544
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.1e-07 Score=92.27 Aligned_cols=114 Identities=12% Similarity=0.075 Sum_probs=74.0
Q ss_pred HHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEE-EEeccc-cCCC--
Q 036725 194 ELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVI-GVLGTI-KLPY-- 265 (392)
Q Consensus 194 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~-~~~~~~-~lp~-- 265 (392)
.+...+...++. +|||+|||+|..+..+++. .++++|+++..+.... +.++..|+.... ...++. ..++
T Consensus 229 ~~~~~L~~~~g~--~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~-~n~~r~g~~~~v~~~~~d~~~~~~~~ 305 (426)
T TIGR00563 229 WVATWLAPQNEE--TILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVY-ENLKRLGLTIKAETKDGDGRGPSQWA 305 (426)
T ss_pred HHHHHhCCCCCC--eEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeccccccccccc
Confidence 344445544443 8999999999999888764 6899988876555543 344455665322 123333 3333
Q ss_pred CCCccceEEec------ccccccc-----cC----------hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 266 PSRAFDMAHCS------RCLIPWS-----AN----------DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 266 ~d~sFDlV~~~------~~l~~~~-----~d----------~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++++||.|++. .++.+.+ .. ...+|.++.++|||||++++++...
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 56789999953 1221111 01 2479999999999999999987655
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.4e-07 Score=92.12 Aligned_cols=110 Identities=14% Similarity=0.204 Sum_probs=74.5
Q ss_pred hCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC-CCCCcc
Q 036725 198 VIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP-YPSRAF 270 (392)
Q Consensus 198 ~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp-~~d~sF 270 (392)
.+...++. +|||+|||+|..+..+++. .|+++|+++..+.... +.+...|+.++.+...+. .++ +.+++|
T Consensus 232 ~l~~~~g~--~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~-~n~~r~g~~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 232 LMELEPGL--RVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVE-KHAKRLKLSSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred HhCCCCCC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCeEEEEECchhhhhhhhhccC
Confidence 34433443 8999999999988877763 6999998876665543 344556776655555555 554 446789
Q ss_pred ceEEecc-c--cccccc------------------ChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 271 DMAHCSR-C--LIPWSA------------------NDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 271 DlV~~~~-~--l~~~~~------------------d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
|.|++.. | +-.+.. ....+|.++.+.|||||++++++...
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9999631 1 101110 11467999999999999999987655
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.9e-06 Score=82.66 Aligned_cols=101 Identities=14% Similarity=0.110 Sum_probs=65.0
Q ss_pred cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC---CCcEEEEeccc--cCCCCCCccceEEec
Q 036725 206 VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG---VPAVIGVLGTI--KLPYPSRAFDMAHCS 276 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg---~~~~~~~~~~~--~lp~~d~sFDlV~~~ 276 (392)
.++||+||||+|.++..+++. .++++|+++..+..+...+....+ .+.+.+..++. -+....++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 449999999999999888765 588888876544443332222111 13333333332 122235789999986
Q ss_pred ccccccccC----hHHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLIPWSAN----DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~~~~~d----~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
... +.... ...+++.+.++|+|||.+++..
T Consensus 153 ~~~-~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 153 STD-PVGPAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred CCC-CCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 432 22211 2578899999999999999974
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.1e-07 Score=87.88 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=69.9
Q ss_pred eEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecc----
Q 036725 208 TALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSR---- 277 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~---- 277 (392)
+|||+|||+|..+..+++. .|+++|+++..+.... +.++..++.++.....+. .++...++||.|++..
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~Pcsg 152 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLI-ANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDAPCSG 152 (264)
T ss_pred EEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHH-HHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcCCCCC
Confidence 8999999999999888763 6889988776554433 344455666655555554 4554556799999631
Q ss_pred --ccc-------cccc--------ChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 278 --CLI-------PWSA--------NDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 278 --~l~-------~~~~--------d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++. .+.+ ....+|.++.+.|||||++++++...
T Consensus 153 ~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 153 EGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 110 0110 11358999999999999999987655
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.9e-07 Score=91.73 Aligned_cols=115 Identities=17% Similarity=0.193 Sum_probs=80.6
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c--
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K-- 262 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~-- 262 (392)
++.+++.+.+.+....+. +|||+|||+|.++..|++. .++++|+++.++..+.. .+...++.++.++.++. .
T Consensus 282 ~e~l~~~vl~~l~~~~~~--~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~~~~~d~~~~l 358 (443)
T PRK13168 282 NQKMVARALEWLDPQPGD--RVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARE-NARRNGLDNVTFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHHHHhcCCCCC--EEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEEeChHHhh
Confidence 456777777777644443 8999999999999999876 78999888876665443 44455666666666665 1
Q ss_pred --CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 263 --LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 263 --lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+++.+++||+|++.. +.. .....+..+.+ ++|+++++++-.+.
T Consensus 359 ~~~~~~~~~fD~Vi~dP---Pr~-g~~~~~~~l~~-~~~~~ivyvSCnp~ 403 (443)
T PRK13168 359 TDQPWALGGFDKVLLDP---PRA-GAAEVMQALAK-LGPKRIVYVSCNPA 403 (443)
T ss_pred hhhhhhcCCCCEEEECc---CCc-ChHHHHHHHHh-cCCCeEEEEEeChH
Confidence 335567899999864 222 23455555555 69999999987655
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-06 Score=79.42 Aligned_cols=119 Identities=9% Similarity=0.024 Sum_probs=74.6
Q ss_pred CccHHHHHHHHHhhCCC-CCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc
Q 036725 185 PHGADAYIEELASVIPM-DSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT 260 (392)
Q Consensus 185 ~~~~~~~i~~l~~~l~~-~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~ 260 (392)
....+...+.+.+.+.. ..+ .+|||+|||+|.++..++.+ .|+++|.++..+..+ .+.++..+...+.++.++
T Consensus 34 Rp~~d~v~e~l~~~l~~~~~~--~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a-~~Nl~~~~~~~v~~~~~D 110 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPVIVD--ARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQL-IKNLATLKAGNARVVNTN 110 (199)
T ss_pred CcCCHHHHHHHHHHHhhhcCC--CEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHH-HHHHHHhCCCcEEEEEch
Confidence 44556666667666642 233 38999999999999865443 788998876443332 334444555555666665
Q ss_pred c--cCCCCCCccceEEecccccccccCh-HHHHHHHHH--hccCCeEEEEEcCC
Q 036725 261 I--KLPYPSRAFDMAHCSRCLIPWSAND-GMYMMEIDR--VLRPGGYWVLSGPL 309 (392)
Q Consensus 261 ~--~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~R--vLkPGG~lvl~~p~ 309 (392)
. .++...++||+|++.-- +.... ..++..+.. +|+|+|+++++.+.
T Consensus 111 ~~~~l~~~~~~fDlV~~DPP---y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 111 ALSFLAQPGTPHNVVFVDPP---FRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HHHHHhhcCCCceEEEECCC---CCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 4 23333457999998753 22222 345555544 37999999997543
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.9e-07 Score=92.24 Aligned_cols=112 Identities=15% Similarity=0.177 Sum_probs=74.0
Q ss_pred HHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC--CC
Q 036725 195 LASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP--YP 266 (392)
Q Consensus 195 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp--~~ 266 (392)
+...+...++ .+|||+|||+|..+..+++. .++++|+++..+..+. +.+.+.|+..+.++.++. .++ ++
T Consensus 242 v~~~l~~~~g--~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~-~n~~~~g~~~v~~~~~D~~~~~~~~~ 318 (444)
T PRK14902 242 VAPALDPKGG--DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIE-ENAKRLGLTNIETKALDARKVHEKFA 318 (444)
T ss_pred HHHHhCCCCC--CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCCcccccchhc
Confidence 3344443344 38999999999999888764 6899988775554433 345556766666666665 332 33
Q ss_pred CCccceEEeccc------cc-----ccccC----------hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 267 SRAFDMAHCSRC------LI-----PWSAN----------DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 267 d~sFDlV~~~~~------l~-----~~~~d----------~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++||+|++..- +. .|... ...+|.++.++|||||.+++++...
T Consensus 319 -~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 319 -EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred -ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 78999997521 00 01111 1357999999999999999886544
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-06 Score=81.82 Aligned_cols=99 Identities=18% Similarity=0.282 Sum_probs=76.5
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc----cCCCCCCccceEEecccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI----KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~----~lp~~d~sFDlV~~~~~l 279 (392)
.+||||||.|.+...++++ +++||++...-+.. ..+.+.+.+++++.+...+. +.-+++++.|-|+..+.
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~-~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP- 128 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAK-ALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFP- 128 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHH-HHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECC-
Confidence 7999999999999999987 89999987754444 45567788886666666665 22245669999998754
Q ss_pred cccccCh--------HHHHHHHHHhccCCeEEEEEcC
Q 036725 280 IPWSAND--------GMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 280 ~~~~~d~--------~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.+|+... ..+|+++.++|+|||.|.+.+.
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 3676432 3799999999999999999763
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.44 E-value=6e-07 Score=84.41 Aligned_cols=107 Identities=13% Similarity=0.183 Sum_probs=70.2
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-c
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-K 262 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~ 262 (392)
.++..+++..+ + ++|||+|||+|+.+..|+.. .++++|+++.....+. +..++.++. .+.+..++. .
T Consensus 58 ~~L~~l~~~~~---~--~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~-~n~~~~gl~~~i~~~~gda~~ 131 (234)
T PLN02781 58 LFLSMLVKIMN---A--KNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGL-EFIKKAGVDHKINFIQSDALS 131 (234)
T ss_pred HHHHHHHHHhC---C--CEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEEccHHH
Confidence 34444444433 2 38999999999877766653 7999999875444333 344455553 455555554 2
Q ss_pred -CC-----CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 263 -LP-----YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 263 -lp-----~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
++ .++++||+|+... ..+....++.++.++|||||++++.
T Consensus 132 ~L~~l~~~~~~~~fD~VfiDa----~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 132 ALDQLLNNDPKPEFDFAFVDA----DKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHHHHHhCCCCCCCCEEEECC----CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 22 1246899998752 2224467899999999999998885
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.3e-06 Score=81.70 Aligned_cols=101 Identities=18% Similarity=0.185 Sum_probs=65.3
Q ss_pred cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHc-C--CCcEEEEecccc--C-CCCCCccceEEe
Q 036725 206 VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALER-G--VPAVIGVLGTIK--L-PYPSRAFDMAHC 275 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~r-g--~~~~~~~~~~~~--l-p~~d~sFDlV~~ 275 (392)
.++||+||||.|..+..+++. +++.+|+++..+..+...+.... + -+.+.++.++.. + ..++++||+|++
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~ 171 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV 171 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence 458999999999999999886 56777776643333322222111 1 245566666541 2 123678999998
Q ss_pred cccccccccC----hHHHHHHHHHhccCCeEEEEEc
Q 036725 276 SRCLIPWSAN----DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 276 ~~~l~~~~~d----~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
... .++... ...+++.+.+.|+|||+++.-.
T Consensus 172 D~~-dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 172 DSS-DPVGPAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred cCC-CCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 632 232211 1468999999999999998743
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.6e-07 Score=83.18 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=79.1
Q ss_pred CcceEEEECCcCchHHHHHhhCCcEEEeCCccChHHHHHHHHHHcC-----CCcEEEEeccccCCCCCCccceEEecccc
Q 036725 205 MVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERG-----VPAVIGVLGTIKLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 205 ~~~~VLDiGCG~G~~~~~L~~~~v~~vd~s~~d~~~a~~~~a~~rg-----~~~~~~~~~~~~lp~~d~sFDlV~~~~~l 279 (392)
...++||.|+|.|..+..|+-..+..||+. +..+..++.|++.- .-..++..+.+....+.++||+|.+..|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlV--Ep~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~l 132 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLV--EPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCL 132 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEE--ES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-G
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEe--ccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhh
Confidence 345899999999999998877645555542 44555666666421 12344555555554346799999999999
Q ss_pred cccccCh-HHHHHHHHHhccCCeEEEEEcCCCc-----hhhhhhhcccChHhHHHHHHHHHHHHHHcCceeccee
Q 036725 280 IPWSAND-GMYMMEIDRVLRPGGYWVLSGPLIN-----WRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEK 348 (392)
Q Consensus 280 ~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p~~~-----~~~~~~~w~~~~e~l~~~~~~i~~l~~~l~W~~~~~~ 348 (392)
.|..++. -.+|+.+...|+|+|++++-.+... +.+.-..+.|+.+ .+.++.++..++.+.+.
T Consensus 133 ghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~-------~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 133 GHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDE-------HFRELFKQAGLRLVKEE 200 (218)
T ss_dssp GGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHH-------HHHHHHHHCT-EEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHH-------HHHHHHHHcCCEEEEec
Confidence 9988444 6899999999999999999432221 1112222444433 35556555566655543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.4e-06 Score=79.95 Aligned_cols=106 Identities=16% Similarity=0.139 Sum_probs=63.6
Q ss_pred ccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-
Q 036725 186 HGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI- 261 (392)
Q Consensus 186 ~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~- 261 (392)
......+..+++.+... -..+++||+|||+|.|+..++++ .++++|+++.++.... ........+...+.
T Consensus 57 sr~~~kL~~~l~~~~~~-~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l-----~~~~~v~~~~~~ni~ 130 (228)
T TIGR00478 57 SRGGEKLKEALEEFNID-VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKL-----RQDERVKVLERTNIR 130 (228)
T ss_pred hhhHHHHHHHHHhcCCC-CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHH-----hcCCCeeEeecCCcc
Confidence 33344555666665532 12348999999999999999887 6899988765444322 22111111111121
Q ss_pred -----cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 262 -----KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 262 -----~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.++..-..+|+++++..+ +|..+.+.|+| |.+++..
T Consensus 131 ~~~~~~~~~d~~~~DvsfiS~~~---------~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 131 YVTPADIFPDFATFDVSFISLIS---------ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred cCCHhHcCCCceeeeEEEeehHh---------HHHHHHHHhCc-CeEEEEc
Confidence 122122367777665432 48899999999 8777654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.8e-06 Score=83.41 Aligned_cols=116 Identities=14% Similarity=0.039 Sum_probs=76.1
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
+.+++.+.+.+....+ .+|||+|||+|.++..++++ .|+++|+++.++..+. +.++..+++++.++.++. .+..
T Consensus 159 ~~l~~~v~~~l~~~~~--~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~-~n~~~~~l~~v~~~~~D~~~~~~ 235 (315)
T PRK03522 159 AQLYATARDWVRELPP--RSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK-QSAAELGLTNVQFQALDSTQFAT 235 (315)
T ss_pred HHHHHHHHHHHHhcCC--CEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH-HHHHHcCCCceEEEEcCHHHHHH
Confidence 4455555555542233 38999999999999999987 7999998876655543 355566776667777765 3322
Q ss_pred -CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 266 -PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 266 -~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
..++||+|++..- .. .....+.++..-++|+++++++..+..
T Consensus 236 ~~~~~~D~Vv~dPP---r~-G~~~~~~~~l~~~~~~~ivyvsc~p~t 278 (315)
T PRK03522 236 AQGEVPDLVLVNPP---RR-GIGKELCDYLSQMAPRFILYSSCNAQT 278 (315)
T ss_pred hcCCCCeEEEECCC---CC-CccHHHHHHHHHcCCCeEEEEECCccc
Confidence 3457999998732 11 222333344455789999998876663
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.1e-06 Score=85.02 Aligned_cols=97 Identities=16% Similarity=0.080 Sum_probs=66.4
Q ss_pred CcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHH--------c---CCCcEEEEeccc-c-CCCCC
Q 036725 205 MVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALE--------R---GVPAVIGVLGTI-K-LPYPS 267 (392)
Q Consensus 205 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~--------r---g~~~~~~~~~~~-~-lp~~d 267 (392)
..++||+||||+|..+..+++. +|+++|+++. +++.|++ + ..+.+.++.++. . +.-..
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpe-----VIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~ 224 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGS-----MINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPS 224 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHH-----HHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcC
Confidence 3459999999999998888875 6788877654 4555553 1 124555555554 2 44446
Q ss_pred CccceEEeccccccccc-----ChHHHHHHHHHhccCCeEEEEEc
Q 036725 268 RAFDMAHCSRCLIPWSA-----NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~-----d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++||+|++... .+... ....+++.+.+.|+|||+++...
T Consensus 225 ~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 225 SLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred CCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 78999998732 12110 11468899999999999998864
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.5e-06 Score=81.41 Aligned_cols=92 Identities=11% Similarity=0.218 Sum_probs=63.5
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~ 282 (392)
+|||+|||+|.++..++.+ +++++|+++. +++.++++. +...++.++. .+. .+++||+|+++..+.+.
T Consensus 67 rVLDLGcGsGilsl~la~r~~~~~V~gVDisp~-----al~~Ar~n~-~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 67 KVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPE-----FARIGKRLL-PEAEWITSDVFEFE-SNEKFDVVISNPPFGKI 139 (279)
T ss_pred eEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHhC-cCCEEEECchhhhc-ccCCCcEEEEcCCcccc
Confidence 8999999999998888663 6888877654 555555543 3334445554 443 35789999998766543
Q ss_pred ccC-------------------hHHHHHHHHHhccCCeEEEEE
Q 036725 283 SAN-------------------DGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 283 ~~d-------------------~~~~L~ei~RvLkPGG~lvl~ 306 (392)
... ...++..+.++|+|+|.+.+.
T Consensus 140 ~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 140 NTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred CchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 211 135678888999999987764
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.32 E-value=6e-06 Score=78.05 Aligned_cols=110 Identities=20% Similarity=0.256 Sum_probs=74.3
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLP 264 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp 264 (392)
+..|+..+...+|. +|||.|.|+|+++..|+.. +|.+.|+...-...+.. ..+..|+ .++.+...+. ...
T Consensus 29 ~~~I~~~l~i~pG~--~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~-n~~~~gl~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 29 ISYILMRLDIRPGS--RVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARK-NFERHGLDDNVTVHHRDVCEEG 105 (247)
T ss_dssp HHHHHHHTT--TT---EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH-HHHHTTCCTTEEEEES-GGCG-
T ss_pred HHHHHHHcCCCCCC--EEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHH-HHHHcCCCCCceeEecceeccc
Confidence 45566777777776 9999999999999999874 78888876533333333 3334565 4677777666 444
Q ss_pred CC---CCccceEEecccccccccChHHHHHHHHHhc-cCCeEEEEEcCCC
Q 036725 265 YP---SRAFDMAHCSRCLIPWSANDGMYMMEIDRVL-RPGGYWVLSGPLI 310 (392)
Q Consensus 265 ~~---d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvL-kPGG~lvl~~p~~ 310 (392)
|+ ++.||.|+.. .+ ++..++..+.++| ||||+++.-.|..
T Consensus 106 ~~~~~~~~~DavfLD-----lp-~Pw~~i~~~~~~L~~~gG~i~~fsP~i 149 (247)
T PF08704_consen 106 FDEELESDFDAVFLD-----LP-DPWEAIPHAKRALKKPGGRICCFSPCI 149 (247)
T ss_dssp -STT-TTSEEEEEEE-----SS-SGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred ccccccCcccEEEEe-----CC-CHHHHHHHHHHHHhcCCceEEEECCCH
Confidence 53 3679999864 22 5666899999999 9999999988766
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.31 E-value=1e-06 Score=80.61 Aligned_cols=114 Identities=23% Similarity=0.426 Sum_probs=63.0
Q ss_pred HHHHHHHH-hhCCC-CCCCcceEEEECCcCc----hHHHHHhhC---------CcEEEeCCccChHHHHHHHHHH-----
Q 036725 189 DAYIEELA-SVIPM-DSGMVRTALDTGCGVA----SWGAYLFKK---------NVITMSFAPRDSHEAQVQFALE----- 248 (392)
Q Consensus 189 ~~~i~~l~-~~l~~-~~~~~~~VLDiGCG~G----~~~~~L~~~---------~v~~vd~s~~d~~~a~~~~a~~----- 248 (392)
+.+.+.++ .++.. ..+..-+|+.+||++| +++..|.+. .|+|+|+++ ..++.|++
T Consensus 13 ~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~-----~~L~~Ar~G~Y~~ 87 (196)
T PF01739_consen 13 EALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISP-----SALEKARAGIYPE 87 (196)
T ss_dssp HHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-H-----HHHHHHHHTEEEG
T ss_pred HHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCH-----HHHHHHHhCCCCH
Confidence 44455555 33322 1234458999999999 555555551 567776654 44555542
Q ss_pred ---cCCC------------------------cEEEEeccc-cCCCCCCccceEEecccccccccCh-HHHHHHHHHhccC
Q 036725 249 ---RGVP------------------------AVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRP 299 (392)
Q Consensus 249 ---rg~~------------------------~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkP 299 (392)
++++ .+.+...+. ..+.+.+.||+|+|.++++.+.+.. ..++..+.+.|+|
T Consensus 88 ~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p 167 (196)
T PF01739_consen 88 RSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP 167 (196)
T ss_dssp GGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE
T ss_pred HHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC
Confidence 1111 244444444 4234467899999999999887544 6899999999999
Q ss_pred CeEEEEEc
Q 036725 300 GGYWVLSG 307 (392)
Q Consensus 300 GG~lvl~~ 307 (392)
||+|++..
T Consensus 168 gG~L~lG~ 175 (196)
T PF01739_consen 168 GGYLFLGH 175 (196)
T ss_dssp EEEEEE-T
T ss_pred CCEEEEec
Confidence 99999953
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.6e-05 Score=73.73 Aligned_cols=108 Identities=21% Similarity=0.259 Sum_probs=74.4
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCc-EEEEe-ccc
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPA-VIGVL-GTI 261 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~-~~~ 261 (392)
..++..+++.. . .++||+||.+.|+.+.+|+.. +++++|+++.....+.. .-++.|+.. +.... ++.
T Consensus 48 g~~L~~L~~~~---~--~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~-n~~~ag~~~~i~~~~~gda 121 (219)
T COG4122 48 GALLRLLARLS---G--PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARE-NLAEAGVDDRIELLLGGDA 121 (219)
T ss_pred HHHHHHHHHhc---C--CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHH-HHHHcCCcceEEEEecCcH
Confidence 33555555443 2 248999999999999999876 58999887754444433 334556544 44444 233
Q ss_pred --cCC-CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 262 --KLP-YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 262 --~lp-~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.+. ...++||+|+.. +...+...++..+.++|||||++++.
T Consensus 122 l~~l~~~~~~~fDliFID----adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 122 LDVLSRLLDGSFDLVFID----ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred HHHHHhccCCCccEEEEe----CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 222 457899999875 34445578999999999999999995
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.3e-06 Score=85.42 Aligned_cols=96 Identities=21% Similarity=0.188 Sum_probs=65.6
Q ss_pred cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHc-----------CCCcEEEEeccc-c-CCCCCC
Q 036725 206 VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALER-----------GVPAVIGVLGTI-K-LPYPSR 268 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~r-----------g~~~~~~~~~~~-~-lp~~d~ 268 (392)
.++|||||||+|..+..++++ +++++|+++. +++.+++. .-+.+..+.++. + +...++
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~-----vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~ 372 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPA-----MTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAE 372 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHH-----HHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCC
Confidence 458999999999999988875 5778877654 44455441 114455555554 2 333357
Q ss_pred ccceEEecccccccccC-----hHHHHHHHHHhccCCeEEEEEc
Q 036725 269 AFDMAHCSRCLIPWSAN-----DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d-----~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+||+|++.... +..+. ...+++++.+.|||||.+++..
T Consensus 373 ~fDvIi~D~~~-~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 373 KFDVIIVDLPD-PSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CCCEEEEeCCC-CCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 89999997432 32211 1368899999999999999865
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.1e-06 Score=76.97 Aligned_cols=97 Identities=25% Similarity=0.379 Sum_probs=63.8
Q ss_pred CcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC---------CC-------------------
Q 036725 205 MVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG---------VP------------------- 252 (392)
Q Consensus 205 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg---------~~------------------- 252 (392)
....+|||||-.|.++..+++. .+.|+|+++.- ++.|++.- +.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~L-----I~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVL-----IQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHH-----HHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 3457999999999999999875 79999886653 44443210 01
Q ss_pred -----------cEEE-----Eeccc-cCCCCCCccceEEecccc----cccccCh-HHHHHHHHHhccCCeEEEEE
Q 036725 253 -----------AVIG-----VLGTI-KLPYPSRAFDMAHCSRCL----IPWSAND-GMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 253 -----------~~~~-----~~~~~-~lp~~d~sFDlV~~~~~l----~~~~~d~-~~~L~ei~RvLkPGG~lvl~ 306 (392)
++.+ ++... -+.+....||+|.|..+- ..|.++. ..++..+.++|.|||+|++.
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 1111 11111 223345689999986332 2344222 58999999999999999996
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.8e-06 Score=78.12 Aligned_cols=94 Identities=22% Similarity=0.364 Sum_probs=65.0
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHH-HHcCC-------C--------cEEEEeccc-cCCCCC
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFA-LERGV-------P--------AVIGVLGTI-KLPYPS 267 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a-~~rg~-------~--------~~~~~~~~~-~lp~~d 267 (392)
.+||..|||.|.-...|+++ .|+|+|+++. .++.+ .+++. . .+.+..++. .++-..
T Consensus 39 ~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~-----Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~ 113 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPT-----AIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED 113 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHTTEEEEEEES-HH-----HHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred CeEEEeCCCChHHHHHHHHCCCeEEEEecCHH-----HHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence 38999999999999999998 7888877654 34443 33322 1 233445554 554333
Q ss_pred -CccceEEecccccccccCh-HHHHHHHHHhccCCeEEEE
Q 036725 268 -RAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 268 -~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl 305 (392)
++||+|+=..++.-++++. ..+.+.+.++|+|||.+++
T Consensus 114 ~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL 153 (218)
T PF05724_consen 114 VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL 153 (218)
T ss_dssp HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 5799999776666565555 7899999999999999544
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.5e-06 Score=83.78 Aligned_cols=115 Identities=19% Similarity=0.252 Sum_probs=77.2
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c--
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K-- 262 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~-- 262 (392)
.+.+++.+.+.+....+. +|||+|||+|.++..|++. .|+++|+++.++..+. +.+...++.++.++.++. .
T Consensus 277 ~~~l~~~~~~~l~~~~~~--~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~-~n~~~~~~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 277 NEKLVDRALEALELQGEE--LVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQ-QNAELNGIANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHHHhccCCCC--EEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHH-HHHHHhCCCceEEEeCCHHHHH
Confidence 444566666666543433 8999999999999999876 7999998876555444 344455677777777775 2
Q ss_pred --CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 263 --LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 263 --lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+++.+++||+|+...- ...-...++..+.+ |+|++.++++..+
T Consensus 354 ~~~~~~~~~~D~vi~dPP---r~G~~~~~l~~l~~-l~~~~ivyvsc~p 398 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPP---RKGCAAEVLRTIIE-LKPERIVYVSCNP 398 (431)
T ss_pred HHHHhcCCCCCEEEECcC---CCCCCHHHHHHHHh-cCCCEEEEEcCCH
Confidence 2344568999987532 11113456666554 8999988887543
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.24 E-value=2e-05 Score=75.69 Aligned_cols=95 Identities=14% Similarity=0.107 Sum_probs=68.1
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc--cCC-C----CCCccceE
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI--KLP-Y----PSRAFDMA 273 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~--~lp-~----~d~sFDlV 273 (392)
++|||||+|+|+.+.+++.. .++++|.++..... ..++.++.|+. .+.+..++. -|+ + .+++||+|
T Consensus 120 k~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~-Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 120 ERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEV-AKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 48999999999999999874 58899887744333 33344556664 566666664 232 1 14689999
Q ss_pred EecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 274 HCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 274 ~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
+... .......++..+.++|+|||.+++.
T Consensus 199 FIDa----~K~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 199 FVDA----DKRMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred EECC----CHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 8752 3334578899999999999999985
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.7e-05 Score=88.41 Aligned_cols=100 Identities=17% Similarity=0.110 Sum_probs=68.5
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC----------------CCcEEEEeccccCCCC
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG----------------VPAVIGVLGTIKLPYP 266 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg----------------~~~~~~~~~~~~lp~~ 266 (392)
.+|||+|||+|.++..++++ .++++|+++..+..+..+... .+ ...+.++.++..-++.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~-n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL-NALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH-cCcccccccccccccccccccEEEEECchhhhcc
Confidence 48999999999999998875 699999988766655544332 21 1245667777633343
Q ss_pred C--CccceEEecccccccc---------------------------------cCh----HHHHHHHHHhccCCeEEEEEc
Q 036725 267 S--RAFDMAHCSRCLIPWS---------------------------------AND----GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 267 d--~sFDlV~~~~~l~~~~---------------------------------~d~----~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+ ..||+|+++--.+... ++. ..++.+..++|+|||.+++..
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 3 3699999983221100 011 367888999999999999975
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.5e-05 Score=71.03 Aligned_cols=106 Identities=18% Similarity=0.238 Sum_probs=72.7
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc--c
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI--K 262 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~--~ 262 (392)
++..+++... .++||+||+++|+.+.+|++. +++++|.++.... ...++.++.|. ..+.+..++. -
T Consensus 36 lL~~l~~~~~-----~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~-~A~~~~~~ag~~~~I~~~~gda~~~ 109 (205)
T PF01596_consen 36 LLQMLVRLTR-----PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAE-IARENFRKAGLDDRIEVIEGDALEV 109 (205)
T ss_dssp HHHHHHHHHT------SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHH-HHHHHHHHTTGGGGEEEEES-HHHH
T ss_pred HHHHHHHhcC-----CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHH-HHHHHHHhcCCCCcEEEEEeccHhh
Confidence 4455544432 238999999999999999974 7999998774333 33345555565 3566666654 2
Q ss_pred CC-----CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 263 LP-----YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 263 lp-----~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
++ .+.+.||+|+... ...+...++..+.+.|+|||.+++.
T Consensus 110 l~~l~~~~~~~~fD~VFiDa----~K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 110 LPELANDGEEGQFDFVFIDA----DKRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHTTTTTSEEEEEEES----TGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhccCCCceeEEEEcc----cccchhhHHHHHhhhccCCeEEEEc
Confidence 22 1235899999763 3335578899999999999999996
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.6e-06 Score=78.44 Aligned_cols=150 Identities=19% Similarity=0.196 Sum_probs=95.2
Q ss_pred EecCCCCCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCc
Q 036725 176 RFPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPA 253 (392)
Q Consensus 176 ~fp~~g~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~ 253 (392)
-|.|.|.||.-..+++...+.---+.-+....++||+|+|.|-.+..++.. .|.+. +.+..|+...++.+...
T Consensus 83 G~lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyAT-----ElS~tMr~rL~kk~ynV 157 (288)
T KOG3987|consen 83 GFLGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYAT-----ELSWTMRDRLKKKNYNV 157 (288)
T ss_pred cccccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHH-----HhhHHHHHHHhhcCCce
Confidence 355677777655555544443221222334568999999999999988876 55555 55666777777666433
Q ss_pred EEEEeccccCCCCCCccceEEecccccccccChHHHHHHHHHhccC-CeEEEEE--cCCCchhh--hhhhcccChHhHHH
Q 036725 254 VIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRP-GGYWVLS--GPLINWRT--NYQAWQRPIKELEE 328 (392)
Q Consensus 254 ~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkP-GG~lvl~--~p~~~~~~--~~~~w~~~~e~l~~ 328 (392)
.. ..+.--.+-+||+|.|...+ .-..++..+|+++..+|+| .|..+++ -|...+.+ ....|.++.+.++.
T Consensus 158 l~----~~ew~~t~~k~dli~clNlL-DRc~~p~kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~ 232 (288)
T KOG3987|consen 158 LT----EIEWLQTDVKLDLILCLNLL-DRCFDPFKLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLEN 232 (288)
T ss_pred ee----ehhhhhcCceeehHHHHHHH-HhhcChHHHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCcCCchHHHHh
Confidence 22 22222224579999998766 3344788999999999999 8887774 35444443 22347777776665
Q ss_pred HHHHHHH
Q 036725 329 EQRKIEE 335 (392)
Q Consensus 329 ~~~~i~~ 335 (392)
..+..++
T Consensus 233 ~Gr~~ee 239 (288)
T KOG3987|consen 233 NGRSFEE 239 (288)
T ss_pred cCccHHH
Confidence 4444444
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.4e-05 Score=74.70 Aligned_cols=90 Identities=10% Similarity=0.202 Sum_probs=58.2
Q ss_pred eEEEECCcCchHHHHHhhC-------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccc
Q 036725 208 TALDTGCGVASWGAYLFKK-------NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l 279 (392)
+|||+|||+|.++..++++ .|+++|+++. +.+.|++.. +...+...+. ..++ +++||+|+++--+
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~-----Al~~Ar~n~-~~~~~~~~D~~~~~~-~~~FDlIIsNPPY 124 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHT-----YYKLGKRIV-PEATWINADALTTEF-DTLFDMAISNPPF 124 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHH-----HHHHHHhhc-cCCEEEEcchhcccc-cCCccEEEECCCC
Confidence 8999999999999887652 6888877554 555555443 2333444444 4444 5789999998543
Q ss_pred cccc-cC----------hHHHHHHHHHhccCCeEEEE
Q 036725 280 IPWS-AN----------DGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 280 ~~~~-~d----------~~~~L~ei~RvLkPGG~lvl 305 (392)
.... .+ ...++..+.|++++|+. |+
T Consensus 125 ~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 125 GKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred CCccccccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 2111 01 13578888887777775 55
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.8e-06 Score=80.57 Aligned_cols=97 Identities=19% Similarity=0.298 Sum_probs=66.8
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEE-EEeccc-cCCCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVI-GVLGTI-KLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~-~~~~~~-~lp~~d~sFDlV~~~~~l~~ 281 (392)
++|||||||+|.++..-++. +|.++|.+. +..-..+.++.++...++ .+.+.. ++-+|..++|+|++-.+-.-
T Consensus 62 K~VlDVGcGtGILS~F~akAGA~~V~aVe~S~--ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~ 139 (346)
T KOG1499|consen 62 KTVLDVGCGTGILSMFAAKAGARKVYAVEASS--IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYF 139 (346)
T ss_pred CEEEEcCCCccHHHHHHHHhCcceEEEEechH--HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHH
Confidence 48999999999888877776 899998864 445556667777776543 333333 44444789999998644311
Q ss_pred --cccChHHHHHHHHHhccCCeEEEE
Q 036725 282 --WSANDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 282 --~~~d~~~~L~ei~RvLkPGG~lvl 305 (392)
+..-.+.+|..=.+.|+|||.++=
T Consensus 140 Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 140 LLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHhhhhhhhhhhhhhccCCCceEcc
Confidence 111225677777899999998865
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.5e-06 Score=90.37 Aligned_cols=102 Identities=14% Similarity=0.070 Sum_probs=69.8
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC--cEEEEeccc-c-CCCCCCccceEEecccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI-K-LPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~--~~~~~~~~~-~-lp~~d~sFDlV~~~~~l 279 (392)
++|||+|||+|.++..++.. .|+++|+++..+..+.. .+...++. .+.++.++. + +.-..++||+|++..-.
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~-N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAER-NFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 48999999999999999976 58999988866665544 33444543 455566654 2 21115689999986321
Q ss_pred cc----------cccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 280 IP----------WSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 280 ~~----------~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
.. ...+...++..+.++|+|||.++++...
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 11 0112346788899999999999997643
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.2e-06 Score=84.73 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=76.8
Q ss_pred cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc---cCCCCCCccceEEeccc
Q 036725 206 VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI---KLPYPSRAFDMAHCSRC 278 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~---~lp~~d~sFDlV~~~~~ 278 (392)
...+||||||.|.++..++.. +++|+|+...-+..+. +.+.+.++.++.+..++. ..-++++++|.|+..+-
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~-~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL-KLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH-HHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 348999999999999999987 8999998765444433 345667788877666654 22378899999998754
Q ss_pred ccccccCh--------HHHHHHHHHhccCCeEEEEEc
Q 036725 279 LIPWSAND--------GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 279 l~~~~~d~--------~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+|+... ..+|.++.++|||||.+.+.+
T Consensus 427 -DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 -DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred -CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 4775432 489999999999999999975
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.2e-05 Score=79.46 Aligned_cols=101 Identities=15% Similarity=0.077 Sum_probs=66.4
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC--cEEEEeccc-cC-C-C--CCCccceEEec
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI-KL-P-Y--PSRAFDMAHCS 276 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~--~~~~~~~~~-~l-p-~--~d~sFDlV~~~ 276 (392)
++|||+|||+|.++...+.. .|+++|+++..+..+. +.+...++. .+.++.++. .. . + ..++||+|++.
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~-~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIAR-QNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 48999999999998775543 6899999876655543 344445553 455666655 22 1 1 35689999987
Q ss_pred ccccccc--------cChHHHHHHHHHhccCCeEEEEEcC
Q 036725 277 RCLIPWS--------ANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 277 ~~l~~~~--------~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.-...-. .....++....++|+|||+++..+.
T Consensus 301 PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 4321111 0123455667899999999998653
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=2e-06 Score=83.02 Aligned_cols=100 Identities=12% Similarity=0.128 Sum_probs=63.9
Q ss_pred ceEEEECCcCc----hHHHHHhhC--------CcEEEeCCccChHHHHHHHHH---HcCC--------------------
Q 036725 207 RTALDTGCGVA----SWGAYLFKK--------NVITMSFAPRDSHEAQVQFAL---ERGV-------------------- 251 (392)
Q Consensus 207 ~~VLDiGCG~G----~~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a~---~rg~-------------------- 251 (392)
-+|+..||++| +++..|.+. .|+|+|++...+..|..-.-. -+++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 48999999999 455555442 477887765444333221000 0011
Q ss_pred -------CcEEEEeccc-cCCCC-CCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEE
Q 036725 252 -------PAVIGVLGTI-KLPYP-SRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 252 -------~~~~~~~~~~-~lp~~-d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~ 306 (392)
..+.+...+. ..+++ .+.||+|+|.++++++.++. ..++..+.+.|+|||+|++.
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred EEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1122333333 33443 57899999999998886443 78999999999999998884
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.1e-05 Score=79.01 Aligned_cols=113 Identities=13% Similarity=-0.009 Sum_probs=72.8
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c-CCCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K-LPYP 266 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~-lp~~ 266 (392)
+.+.+.+.+....+ .+|||+|||+|.++..++.+ .++++|+++..+..+. +.++..++.++.+..++. . ++-.
T Consensus 221 l~~~~~~~l~~~~~--~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~-~N~~~~~~~~~~~~~~d~~~~~~~~ 297 (374)
T TIGR02085 221 LYATARQWVREIPV--TQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQ-QSAQMLGLDNLSFAALDSAKFATAQ 297 (374)
T ss_pred HHHHHHHHHHhcCC--CEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHH-HHHHHcCCCcEEEEECCHHHHHHhc
Confidence 33444444432223 38999999999999999876 7899998876554433 455556666666666665 3 2212
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.++||+|+..- +...-...++..+. .++|++.++++..+.
T Consensus 298 ~~~~D~vi~DP---Pr~G~~~~~l~~l~-~~~p~~ivyvsc~p~ 337 (374)
T TIGR02085 298 MSAPELVLVNP---PRRGIGKELCDYLS-QMAPKFILYSSCNAQ 337 (374)
T ss_pred CCCCCEEEECC---CCCCCcHHHHHHHH-hcCCCeEEEEEeCHH
Confidence 24699999874 22212245555554 479999999987555
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.8e-05 Score=69.69 Aligned_cols=121 Identities=18% Similarity=0.042 Sum_probs=66.3
Q ss_pred CccHHHHHHHHHhhC----CCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC---CCc
Q 036725 185 PHGADAYIEELASVI----PMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG---VPA 253 (392)
Q Consensus 185 ~~~~~~~i~~l~~~l----~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg---~~~ 253 (392)
-+.+..+.+.+.+.. .......++|||+|||+|..+..++.. .|+..|..+ .-+.....++..+ ...
T Consensus 21 W~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--~l~~l~~Ni~~N~~~~~~~ 98 (173)
T PF10294_consen 21 WPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--VLELLRRNIELNGSLLDGR 98 (173)
T ss_dssp --HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S---HHHHHHHHHHTT-------
T ss_pred echHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch--hhHHHHHHHHhcccccccc
Confidence 345555566666542 111223359999999999777776665 788888865 3333444444333 122
Q ss_pred EEEEeccc-c-C---CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 254 VIGVLGTI-K-L---PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 254 ~~~~~~~~-~-l---p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+....-+. . . ....++||+|+++.++. .......++.-+.++|+|+|.+++..+
T Consensus 99 v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y-~~~~~~~L~~tl~~ll~~~~~vl~~~~ 157 (173)
T PF10294_consen 99 VSVRPLDWGDELDSDLLEPHSFDVILASDVLY-DEELFEPLVRTLKRLLKPNGKVLLAYK 157 (173)
T ss_dssp -EEEE--TTS-HHHHHHS-SSBSEEEEES--S--GGGHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred ccCcEEEecCcccccccccccCCEEEEecccc-hHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 22222222 1 1 12346899999999884 344558899999999999999777653
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.2e-05 Score=76.68 Aligned_cols=84 Identities=18% Similarity=0.225 Sum_probs=56.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
...++.+.+.+....+. +|||||||+|.++..|+++ .++++|+++.++....... . ..+++.++.++. .+++
T Consensus 15 ~~~~~~iv~~~~~~~~~--~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~-~--~~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGD--PVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDE-I--AAGNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHHHHhcCCCCcC--eEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHh-c--cCCCEEEEEeccccCCc
Confidence 45677777777654443 8999999999999999987 7888988665443322211 1 134555566555 6666
Q ss_pred CCCccceEEecccc
Q 036725 266 PSRAFDMAHCSRCL 279 (392)
Q Consensus 266 ~d~sFDlV~~~~~l 279 (392)
+ .||.|+++...
T Consensus 90 ~--~~d~Vv~NlPy 101 (258)
T PRK14896 90 P--EFNKVVSNLPY 101 (258)
T ss_pred h--hceEEEEcCCc
Confidence 4 48999988543
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.5e-05 Score=72.88 Aligned_cols=156 Identities=22% Similarity=0.309 Sum_probs=96.3
Q ss_pred HHHHHHHHhhCCC--CCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc---------------
Q 036725 189 DAYIEELASVIPM--DSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER--------------- 249 (392)
Q Consensus 189 ~~~i~~l~~~l~~--~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r--------------- 249 (392)
..+++.|.+.++. ......+||--|||.|.++-.++.+ .+.+.++|..|+-.. ++....
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s--~fiLn~~~~~~~~~I~Pf~~~ 115 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLAS--NFILNHCSQPNQFTIYPFVHS 115 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHH--HHHHcccCCCCcEEEecceec
Confidence 4466777777763 2223348999999999999999998 566777765543221 121110
Q ss_pred --------------------------CCCcEEEEeccc-cCCCCC---CccceEEecccccccccChHHHHHHHHHhccC
Q 036725 250 --------------------------GVPAVIGVLGTI-KLPYPS---RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRP 299 (392)
Q Consensus 250 --------------------------g~~~~~~~~~~~-~lp~~d---~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkP 299 (392)
....+...+++. .+.-++ ++||+|++.+ ++....+.-.++..|.++|||
T Consensus 116 ~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~F-FIDTA~Ni~~Yi~tI~~lLkp 194 (270)
T PF07942_consen 116 FSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCF-FIDTAENIIEYIETIEHLLKP 194 (270)
T ss_pred ccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEE-EeechHHHHHHHHHHHHHhcc
Confidence 001233344444 222223 6999999874 345565678999999999999
Q ss_pred CeEEEEEcCCCchhhhhhhcccChHhHHHHHHHHHHHHHHcCceecceec
Q 036725 300 GGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKG 349 (392)
Q Consensus 300 GG~lvl~~p~~~~~~~~~~w~~~~e~l~~~~~~i~~l~~~l~W~~~~~~~ 349 (392)
||+||=.+|-........ ......++-..+++..+.+.+.|+.+.++.
T Consensus 195 gG~WIN~GPLlyh~~~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 195 GGYWINFGPLLYHFEPMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CCEEEecCCccccCCCCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 998888777663211110 001111233345688888899998876654
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.8e-05 Score=75.62 Aligned_cols=41 Identities=24% Similarity=0.463 Sum_probs=35.7
Q ss_pred CCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEE
Q 036725 266 PSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~ 306 (392)
..+.||+|+|..+++.+.... .+++..++..|+|||+|++-
T Consensus 199 ~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 199 FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 456799999999999887444 68999999999999999994
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.6e-05 Score=63.04 Aligned_cols=99 Identities=28% Similarity=0.385 Sum_probs=62.4
Q ss_pred EEEECCcCchH--HHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEecccc--CCCCC-CccceEEeccccc
Q 036725 209 ALDTGCGVASW--GAYLFKK--NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIK--LPYPS-RAFDMAHCSRCLI 280 (392)
Q Consensus 209 VLDiGCG~G~~--~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~~--lp~~d-~sFDlV~~~~~l~ 280 (392)
+||+|||+|.. ...+... .++++|+++.++......... .... ......+... +++.+ ..||++ +.....
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 99999999984 4444332 466776665444331111111 2211 1233333333 78877 589999 665665
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 281 PWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 281 ~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++.. ....+.++.++|+|+|.+++.....
T Consensus 130 ~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 130 HLLP-PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred hcCC-HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 5553 7889999999999999999976443
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.8e-05 Score=70.43 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhCCCCC-CCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEe----
Q 036725 188 ADAYIEELASVIPMDS-GMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVL---- 258 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~-~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~---- 258 (392)
.+.+++.+.+.+.... .....+||+|||+|..+..|+.. .++++|.+...+.-+. +.|...++...+.+.
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~-eN~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK-ENAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH-HHHHHHhhcCceEEEeccc
Confidence 3667777666654321 11127999999999988888765 7888877654433322 233333333322222
Q ss_pred -ccc--cCCCCCCccceEEeccccccccc-------------------------ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 259 -GTI--KLPYPSRAFDMAHCSRCLIPWSA-------------------------NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 259 -~~~--~lp~~d~sFDlV~~~~~l~~~~~-------------------------d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.+. ..+..++.+|+++|+--.+.-.+ ..-.++.-+-|.|+|||.+++...
T Consensus 209 e~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~ 286 (328)
T KOG2904|consen 209 ESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELV 286 (328)
T ss_pred ccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEec
Confidence 222 33455799999999843321110 001566778899999999999753
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.7e-06 Score=80.72 Aligned_cols=98 Identities=21% Similarity=0.276 Sum_probs=73.0
Q ss_pred eEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
.++|+|||.|....+++.. ++++++.++.....+........--....++..+. ..||++++||.+-+..+..|..
T Consensus 113 ~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~ 192 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAP 192 (364)
T ss_pred cccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCC
Confidence 6899999999888777654 78888777655555444333222111222244454 8899999999999998887666
Q ss_pred cChHHHHHHHHHhccCCeEEEEE
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
+...++.|++|+++|||+++..
T Consensus 193 -~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 193 -DLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred -cHHHHHHHHhcccCCCceEEeH
Confidence 8999999999999999999984
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.1e-05 Score=73.05 Aligned_cols=93 Identities=20% Similarity=0.270 Sum_probs=57.5
Q ss_pred cHHHHHHHHHhhCCCC------CCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCC-cEE
Q 036725 187 GADAYIEELASVIPMD------SGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVP-AVI 255 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~------~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~ 255 (392)
+.-.|+..+.+++... .+...++||||||+|.+...|+.+ .++++|+++..+..++...+...++. .+.
T Consensus 90 ~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~ 169 (321)
T PRK11727 90 GRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIR 169 (321)
T ss_pred cHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEE
Confidence 3456777776665321 223458999999999887777654 78999998866666555443331343 233
Q ss_pred EE-eccc-cCC----CCCCccceEEecccc
Q 036725 256 GV-LGTI-KLP----YPSRAFDMAHCSRCL 279 (392)
Q Consensus 256 ~~-~~~~-~lp----~~d~sFDlV~~~~~l 279 (392)
+. ..+. .+. .+++.||+|+|+--+
T Consensus 170 ~~~~~~~~~i~~~i~~~~~~fDlivcNPPf 199 (321)
T PRK11727 170 LRLQKDSKAIFKGIIHKNERFDATLCNPPF 199 (321)
T ss_pred EEEccchhhhhhcccccCCceEEEEeCCCC
Confidence 32 2222 211 246789999999644
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.94 E-value=4e-05 Score=75.11 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=73.6
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHH----cCCCcEEE-Ee-cccc
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALE----RGVPAVIG-VL-GTIK 262 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~----rg~~~~~~-~~-~~~~ 262 (392)
+...+.++.....|. .|||-=||||++.....-. +++|.|+ ...|++-|+. .+++.... .. +...
T Consensus 185 lAR~mVNLa~v~~G~--~vlDPFcGTGgiLiEagl~G~~viG~Di-----d~~mv~gak~Nl~~y~i~~~~~~~~~Da~~ 257 (347)
T COG1041 185 LARAMVNLARVKRGE--LVLDPFCGTGGILIEAGLMGARVIGSDI-----DERMVRGAKINLEYYGIEDYPVLKVLDATN 257 (347)
T ss_pred HHHHHHHHhccccCC--EeecCcCCccHHHHhhhhcCceEeecch-----HHHHHhhhhhhhhhhCcCceeEEEeccccc
Confidence 344445555555565 8999999999998766554 6666655 4455554443 23444422 33 3448
Q ss_pred CCCCCCccceEEecccc-----cccc--cC-hHHHHHHHHHhccCCeEEEEEcC
Q 036725 263 LPYPSRAFDMAHCSRCL-----IPWS--AN-DGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l-----~~~~--~d-~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+|+++++||.|++..-. ..-. ++ ...+|..+.++|++||++++..|
T Consensus 258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 99999999999986311 0111 11 25899999999999999999887
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.6e-05 Score=75.02 Aligned_cols=81 Identities=11% Similarity=0.083 Sum_probs=55.4
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcC-CCcEEEEeccc-cCCC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERG-VPAVIGVLGTI-KLPY 265 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg-~~~~~~~~~~~-~lp~ 265 (392)
..++.+++.+....+. +|||||||+|.++..|+++ .++++|+++.++.. ++++. .+.+.++.++. .+++
T Consensus 29 ~i~~~i~~~l~~~~~~--~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~-----~~~~~~~~~v~~i~~D~~~~~~ 101 (272)
T PRK00274 29 NILDKIVDAAGPQPGD--NVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPI-----LAETFAEDNLTIIEGDALKVDL 101 (272)
T ss_pred HHHHHHHHhcCCCCcC--eEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHH-----HHHhhccCceEEEEChhhcCCH
Confidence 4567777777654444 8999999999999999987 78999887654443 33321 14455566665 6666
Q ss_pred CCCccceEEecc
Q 036725 266 PSRAFDMAHCSR 277 (392)
Q Consensus 266 ~d~sFDlV~~~~ 277 (392)
++-.+|.|+++.
T Consensus 102 ~~~~~~~vv~Nl 113 (272)
T PRK00274 102 SELQPLKVVANL 113 (272)
T ss_pred HHcCcceEEEeC
Confidence 543358888873
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.92 E-value=8.4e-05 Score=73.49 Aligned_cols=97 Identities=16% Similarity=0.202 Sum_probs=64.7
Q ss_pred CcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC--------CCcEEEEeccc--cCCCCCCcc
Q 036725 205 MVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG--------VPAVIGVLGTI--KLPYPSRAF 270 (392)
Q Consensus 205 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg--------~~~~~~~~~~~--~lp~~d~sF 270 (392)
..++||.||+|.|..+..+++. +++++|+++. .++.+++.. -+.+.++.++. -+....++|
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~-----vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~y 177 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQE-----VVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKF 177 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHH-----HHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCc
Confidence 3458999999999999988875 5788877664 444444321 24455555554 334446789
Q ss_pred ceEEeccccccccc------ChHHHHH-HHHHhccCCeEEEEEc
Q 036725 271 DMAHCSRCLIPWSA------NDGMYMM-EIDRVLRPGGYWVLSG 307 (392)
Q Consensus 271 DlV~~~~~l~~~~~------d~~~~L~-ei~RvLkPGG~lvl~~ 307 (392)
|+|++.. ..++.. ....+++ .+.+.|+|||++++..
T Consensus 178 DvIi~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 178 DVIIGDL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred cEEEecC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999863 222211 1245777 8999999999998854
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.2e-05 Score=73.23 Aligned_cols=107 Identities=13% Similarity=0.107 Sum_probs=70.9
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc--
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-- 261 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-- 261 (392)
.++..+++... .++||+||+++|+.+.+|+.. +++++|..+..... ..+...+.|+ ..+.++.++.
T Consensus 69 ~lL~~l~~~~~-----ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~-Ar~~~~~ag~~~~I~~~~G~a~e 142 (247)
T PLN02589 69 QFLNMLLKLIN-----AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYEL-GLPVIQKAGVAHKIDFREGPALP 142 (247)
T ss_pred HHHHHHHHHhC-----CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHH-HHHHHHHCCCCCceEEEeccHHH
Confidence 34555554433 238999999999999888764 68999886633332 2333344554 4566666654
Q ss_pred cCCC------CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 262 KLPY------PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 262 ~lp~------~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.|+- ..++||+|+... .......++..+.+.|+|||++++.
T Consensus 143 ~L~~l~~~~~~~~~fD~iFiDa----dK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 143 VLDQMIEDGKYHGTFDFIFVDA----DKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred HHHHHHhccccCCcccEEEecC----CHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 2321 136899999763 3334467888889999999998884
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.6e-05 Score=75.54 Aligned_cols=93 Identities=25% Similarity=0.313 Sum_probs=66.8
Q ss_pred eEEEECCcCchHHHHHhhCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccccCh-
Q 036725 208 TALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSAND- 286 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~- 286 (392)
.+||+|||.|-++..=..-.+++.|+ ....+..++..+.. ...+.+...+|+++.+||.+++..+++|+....
T Consensus 48 v~~d~gCGngky~~~~p~~~~ig~D~-----c~~l~~~ak~~~~~-~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~R 121 (293)
T KOG1331|consen 48 VGLDVGCGNGKYLGVNPLCLIIGCDL-----CTGLLGGAKRSGGD-NVCRADALKLPFREESFDAALSIAVIHHLSTRER 121 (293)
T ss_pred eeeecccCCcccCcCCCcceeeecch-----hhhhccccccCCCc-eeehhhhhcCCCCCCccccchhhhhhhhhhhHHH
Confidence 79999999996543221113556644 44444455555533 344555569999999999999999998887433
Q ss_pred -HHHHHHHHHhccCCeEEEEE
Q 036725 287 -GMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 287 -~~~L~ei~RvLkPGG~lvl~ 306 (392)
..+++|+.|+|||||...+.
T Consensus 122 R~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 122 RERALEELLRVLRPGGNALVY 142 (293)
T ss_pred HHHHHHHHHHHhcCCCceEEE
Confidence 68999999999999997774
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00017 Score=66.25 Aligned_cols=145 Identities=17% Similarity=0.151 Sum_probs=87.0
Q ss_pred HHHHHHHHHhhCCCCCC--CcceEEEECCcCchHHHHHhhC-CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC
Q 036725 188 ADAYIEELASVIPMDSG--MVRTALDTGCGVASWGAYLFKK-NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP 264 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~--~~~~VLDiGCG~G~~~~~L~~~-~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp 264 (392)
..-.++.+.+....... ...++|||||=+......-... .|+.+|+.+... . +..++-...|
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~~fdvt~IDLns~~~--------------~-I~qqDFm~rp 96 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSGWFDVTRIDLNSQHP--------------G-ILQQDFMERP 96 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCcccccCceeeEEeecCCCCC--------------C-ceeeccccCC
Confidence 34455555555432221 1248999998755433222222 688888865321 1 2233333444
Q ss_pred C---CCCccceEEecccccccccCh---HHHHHHHHHhccCCeE-----EEEEcCCCchhhhhhhcccChHhHHHHHHHH
Q 036725 265 Y---PSRAFDMAHCSRCLIPWSAND---GMYMMEIDRVLRPGGY-----WVLSGPLINWRTNYQAWQRPIKELEEEQRKI 333 (392)
Q Consensus 265 ~---~d~sFDlV~~~~~l~~~~~d~---~~~L~ei~RvLkPGG~-----lvl~~p~~~~~~~~~~w~~~~e~l~~~~~~i 333 (392)
. ++++||+|.++.+|...+ ++ +.+++.+.+.|+|+|. |+++.|........ + -....+
T Consensus 97 lp~~~~e~FdvIs~SLVLNfVP-~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSR--y--------~~~~~l 165 (219)
T PF11968_consen 97 LPKNESEKFDVISLSLVLNFVP-DPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSR--Y--------MTEERL 165 (219)
T ss_pred CCCCcccceeEEEEEEEEeeCC-CHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhccc--c--------cCHHHH
Confidence 4 378999999999885443 55 6899999999999999 88887766321110 0 012346
Q ss_pred HHHHHHcCceecceec----cEEEEEecC
Q 036725 334 EEIAKLLCWEKKHEKG----ETAIWQKRI 358 (392)
Q Consensus 334 ~~l~~~l~W~~~~~~~----~~~iw~KP~ 358 (392)
.++...+.+..+..+. ..-+|+|..
T Consensus 166 ~~im~~LGf~~~~~~~~~Kl~y~l~r~~~ 194 (219)
T PF11968_consen 166 REIMESLGFTRVKYKKSKKLAYWLFRKSG 194 (219)
T ss_pred HHHHHhCCcEEEEEEecCeEEEEEEeecC
Confidence 6777788887665543 244566643
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.5e-05 Score=73.52 Aligned_cols=85 Identities=18% Similarity=0.254 Sum_probs=58.6
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
...++.+++.+....+. +|||||||+|.++..|+++ .++++|+++..+..+..+++.....+.+.++.++. ..++
T Consensus 22 ~~i~~~Iv~~~~~~~~~--~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~ 99 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTD--TVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF 99 (294)
T ss_pred HHHHHHHHHhcCCCCcC--EEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc
Confidence 34677777777655554 8999999999999999886 79999887765554443332221135566677766 5554
Q ss_pred CCCccceEEecc
Q 036725 266 PSRAFDMAHCSR 277 (392)
Q Consensus 266 ~d~sFDlV~~~~ 277 (392)
..||.|+++.
T Consensus 100 --~~~d~VvaNl 109 (294)
T PTZ00338 100 --PYFDVCVANV 109 (294)
T ss_pred --cccCEEEecC
Confidence 3689999874
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00015 Score=69.37 Aligned_cols=170 Identities=21% Similarity=0.281 Sum_probs=99.6
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCchhhhh-hhccceeccCCeEEecCCCCCCCccHHHHHHHHHhhCCCCCCCcceEEE
Q 036725 133 KGYATPFRWPKSRDYVPYANAPYKSLTVEK-AVQNWIQYEGNVFRFPGGGTQFPHGADAYIEELASVIPMDSGMVRTALD 211 (392)
Q Consensus 133 ~gY~~Pl~wp~s~~~~wy~~~p~~~l~~~k-~~q~w~~~~~~~~~fp~~g~~f~~~~~~~i~~l~~~l~~~~~~~~~VLD 211 (392)
-|+..-|---.+.|++ |.|.|.......+ -++.|+.--|=+ +-.+-....+..+..-+..+.. .+..-+|||
T Consensus 69 lG~~tGFDSGstLDYV-YrN~p~G~~~~GrliDr~yLnaiGWr-----GIR~Rk~~l~~~i~~ai~~L~~-~g~pvrIlD 141 (311)
T PF12147_consen 69 LGLETGFDSGSTLDYV-YRNQPQGKGPLGRLIDRNYLNAIGWR-----GIRQRKVHLEELIRQAIARLRE-QGRPVRILD 141 (311)
T ss_pred echhcCCCCcchHhHH-hcCCCCCcchHHHHHHHhhhcccchH-----HHHHHHHHHHHHHHHHHHHHHh-cCCceEEEE
Confidence 3566666666667765 6677765544332 234444311000 0000001112223332333332 233458999
Q ss_pred ECCcCchHHHHHhhC------CcEEEeCCccChHHHHHHHHHHcCCCcE-EEEeccc--cCCCC--CCccceEEeccccc
Q 036725 212 TGCGVASWGAYLFKK------NVITMSFAPRDSHEAQVQFALERGVPAV-IGVLGTI--KLPYP--SRAFDMAHCSRCLI 280 (392)
Q Consensus 212 iGCG~G~~~~~L~~~------~v~~vd~s~~d~~~a~~~~a~~rg~~~~-~~~~~~~--~lp~~--d~sFDlV~~~~~l~ 280 (392)
|.||.|.+....+.. .|.-.|+++..+... .+.++++|+..+ .+..++. ...+. +-..++++.+...+
T Consensus 142 IAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g-~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~E 220 (311)
T PF12147_consen 142 IAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKG-RALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYE 220 (311)
T ss_pred eccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHH-HHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEEecchh
Confidence 999999877665543 577788887655543 447788888665 6666664 11122 34568999887665
Q ss_pred ccccCh--HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 281 PWSAND--GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 281 ~~~~d~--~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
-+.++. ...|..+.+.|.|||+++.+..|.
T Consensus 221 lF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPw 252 (311)
T PF12147_consen 221 LFPDNDLVRRSLAGLARALEPGGYLIYTGQPW 252 (311)
T ss_pred hCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCC
Confidence 555333 467999999999999999987443
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00015 Score=68.88 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=53.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcC--CCcEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERG--VPAVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg--~~~~~~~~~~~-~l 263 (392)
...++.+++.+....+. +|||||||+|.++..|+++ .++++|+++..+ +.+.++. .+.+..+.++. .+
T Consensus 15 ~~i~~~i~~~~~~~~~~--~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~-----~~l~~~~~~~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGD--VVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLA-----EILRKLLSLYERLEVIEGDALKV 87 (253)
T ss_pred HHHHHHHHHhcCCCCcC--EEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHH-----HHHHHHhCcCCcEEEEECchhcC
Confidence 44667777777654443 8999999999999999987 788888866433 3333221 24555566665 66
Q ss_pred CCCCCccc---eEEecc
Q 036725 264 PYPSRAFD---MAHCSR 277 (392)
Q Consensus 264 p~~d~sFD---lV~~~~ 277 (392)
+++ +|| +|+++.
T Consensus 88 ~~~--~~d~~~~vvsNl 102 (253)
T TIGR00755 88 DLP--DFPKQLKVVSNL 102 (253)
T ss_pred Chh--HcCCcceEEEcC
Confidence 664 466 777764
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.82 E-value=5.4e-05 Score=67.95 Aligned_cols=108 Identities=23% Similarity=0.376 Sum_probs=62.2
Q ss_pred cHHHHHHHHHhhCC-CCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc
Q 036725 187 GADAYIEELASVIP-MDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT 260 (392)
Q Consensus 187 ~~~~~i~~l~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~ 260 (392)
++...+.++.+... ...+...++||+||++|.|+..+.++ .|+++|+.+.+.. +......++
T Consensus 4 Ra~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~------------~~~~~i~~d 71 (181)
T PF01728_consen 4 RAAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL------------QNVSFIQGD 71 (181)
T ss_dssp THHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-------------TTEEBTTGG
T ss_pred HHHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc------------cceeeeecc
Confidence 34455666777766 33445569999999999999999987 5889998764111 111111111
Q ss_pred ------c-c----CCCCCCccceEEeccccccccc----Ch-------HHHHHHHHHhccCCeEEEEEc
Q 036725 261 ------I-K----LPYPSRAFDMAHCSRCLIPWSA----ND-------GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 261 ------~-~----lp~~d~sFDlV~~~~~l~~~~~----d~-------~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. . ++-..+.||+|+|..+. .... +. ...+.-+.+.|+|||.+++-.
T Consensus 72 ~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~-~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~ 139 (181)
T PF01728_consen 72 ITNPENIKDIRKLLPESGEKFDLVLSDMAP-NVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKV 139 (181)
T ss_dssp GEEEEHSHHGGGSHGTTTCSESEEEE--------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred cchhhHHHhhhhhccccccCcceecccccc-CCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEe
Confidence 1 1 11112689999997532 1111 11 134455567799999988854
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00018 Score=65.19 Aligned_cols=93 Identities=19% Similarity=0.195 Sum_probs=65.3
Q ss_pred eEEEECCcCchHHHHHh----hCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 208 TALDTGCGVASWGAYLF----KKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~----~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
+++|||+|.|.=+..|+ +.+++-+|-...-.. -..+.+.+.+++++....+....+....+||+|++..+.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~---- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVA-FLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA---- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHH-HHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHH-HHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc----
Confidence 79999999995444433 347888887654322 233455677888888777776445567899999987543
Q ss_pred cChHHHHHHHHHhccCCeEEEEE
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
....++.-+...|++||.+++.
T Consensus 126 -~l~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 126 -PLDKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp -SHHHHHHHHGGGEEEEEEEEEE
T ss_pred -CHHHHHHHHHHhcCCCCEEEEE
Confidence 5567888899999999999885
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.80 E-value=5.3e-05 Score=74.06 Aligned_cols=96 Identities=23% Similarity=0.282 Sum_probs=68.5
Q ss_pred cceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 206 VRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
....+|+|.|.|..+..+... ++.++++....+.+ .|...+ +.+..+.++.-...|.+ |+|++-++++||.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~----~a~~~~-~gV~~v~gdmfq~~P~~--daI~mkWiLhdwt 250 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLA----AAPYLA-PGVEHVAGDMFQDTPKG--DAIWMKWILHDWT 250 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHh----hhhhhc-CCcceecccccccCCCc--CeEEEEeecccCC
Confidence 458999999999999998886 67788774433322 222222 33444455541113333 5999999999999
Q ss_pred cCh-HHHHHHHHHhccCCeEEEEEcC
Q 036725 284 AND-GMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 284 ~d~-~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++. .++|+.++..|+|||.+++...
T Consensus 251 DedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 251 DEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 544 7999999999999999999754
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.6e-05 Score=71.07 Aligned_cols=96 Identities=21% Similarity=0.267 Sum_probs=64.3
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHH----cCC--CcEEEEeccc-c--CCCCCCccceEE
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALE----RGV--PAVIGVLGTI-K--LPYPSRAFDMAH 274 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~----rg~--~~~~~~~~~~-~--lp~~d~sFDlV~ 274 (392)
.+|||...|-|++++.-+++ .|++++.++. -++.|.- +++ .++.++.++. + -.|+|.+||+|+
T Consensus 136 ~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~-----VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 136 ERVLDTCTGLGYTAIEALERGAIHVITVEKDPN-----VLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred CEeeeeccCccHHHHHHHHcCCcEEEEEeeCCC-----eEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 39999999999999999888 5667766553 2333332 222 2345666665 2 358899999998
Q ss_pred eccccccccc--ChHHHHHHHHHhccCCeEEEEEc
Q 036725 275 CSRCLIPWSA--NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 275 ~~~~l~~~~~--d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
-.--...... .-+.+.+|++|+|||||.++-.+
T Consensus 211 HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 211 HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 4321111111 22689999999999999987744
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00015 Score=66.59 Aligned_cols=120 Identities=16% Similarity=0.172 Sum_probs=74.6
Q ss_pred eEEecCCCCCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhh--C--CcEEEeCCccChHHHHHHHHHHc
Q 036725 174 VFRFPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFK--K--NVITMSFAPRDSHEAQVQFALER 249 (392)
Q Consensus 174 ~~~fp~~g~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~--~--~v~~vd~s~~d~~~a~~~~a~~r 249 (392)
.+.+.-...+|.++...-..++.+.+. ++. +|||+-||.|.|+..+++ + .|+++|++|. .-+.+.+.++.+
T Consensus 74 ~f~~D~~kvyfs~rl~~Er~Ri~~~v~--~~e--~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~-a~~~L~~Ni~lN 148 (200)
T PF02475_consen 74 RFKVDLSKVYFSPRLSTERRRIANLVK--PGE--VVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPD-AVEYLKENIRLN 148 (200)
T ss_dssp EEEEETTTS---GGGHHHHHHHHTC----TT---EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HH-HHHHHHHHHHHT
T ss_pred EEEEccceEEEccccHHHHHHHHhcCC--cce--EEEEccCCccHHHHHHhhhcCccEEEEecCCHH-HHHHHHHHHHHc
Confidence 344444566676666656667776644 444 899999999999999998 3 6999999884 344455566666
Q ss_pred CCCc-EEEEeccc-cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEE
Q 036725 250 GVPA-VIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWV 304 (392)
Q Consensus 250 g~~~-~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lv 304 (392)
++.. +....++. .+.- .+.||-|++.. +..-..+|..+.+++|+||.+-
T Consensus 149 kv~~~i~~~~~D~~~~~~-~~~~drvim~l-----p~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 149 KVENRIEVINGDAREFLP-EGKFDRVIMNL-----PESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp T-TTTEEEEES-GGG----TT-EEEEEE-------TSSGGGGHHHHHHHEEEEEEEE
T ss_pred CCCCeEEEEcCCHHHhcC-ccccCEEEECC-----hHHHHHHHHHHHHHhcCCcEEE
Confidence 6544 44566666 3433 88999998753 2233468899999999999874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00022 Score=64.30 Aligned_cols=112 Identities=19% Similarity=0.258 Sum_probs=68.7
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----C---------cEEEeCCccChHHHHHHHHHHcCCC-cEE
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----N---------VITMSFAPRDSHEAQVQFALERGVP-AVI 255 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~---------v~~vd~s~~d~~~a~~~~a~~rg~~-~~~ 255 (392)
.+...++.+.....+. .+||--||+|++....+.. . +.+.|+++..+..+.. .+...++. .+.
T Consensus 15 ~lA~~ll~la~~~~~~--~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~-N~~~ag~~~~i~ 91 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGD--VVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARE-NLKAAGVEDYID 91 (179)
T ss_dssp HHHHHHHHHTT--TTS---EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHH-HHHHTT-CGGEE
T ss_pred HHHHHHHHHhCCCCCC--EEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHH-HHHhcccCCceE
Confidence 3445555555544444 8999999999988654432 3 5699998876665444 44555553 344
Q ss_pred EEeccc-cCCCCCCccceEEecccccccccC------h----HHHHHHHHHhccCCeEEEEEc
Q 036725 256 GVLGTI-KLPYPSRAFDMAHCSRCLIPWSAN------D----GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 256 ~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~d------~----~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+...+. ++++.++++|.|+++. +|... . ..+++++.|+|++..++++..
T Consensus 92 ~~~~D~~~l~~~~~~~d~IvtnP---PyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~~ 151 (179)
T PF01170_consen 92 FIQWDARELPLPDGSVDAIVTNP---PYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTTS 151 (179)
T ss_dssp EEE--GGGGGGTTSBSCEEEEE-----STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEES
T ss_pred EEecchhhcccccCCCCEEEECc---chhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
Confidence 455444 8888889999999984 33211 1 367899999999955555543
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00052 Score=62.43 Aligned_cols=115 Identities=9% Similarity=-0.046 Sum_probs=67.5
Q ss_pred HHHHHHHHHhhCCC-CCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-
Q 036725 188 ADAYIEELASVIPM-DSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI- 261 (392)
Q Consensus 188 ~~~~i~~l~~~l~~-~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~- 261 (392)
.+...+.+...+.. ..+ .++||++||+|.++..++.+ .++++|.++..+... .+.+...+.. .+.+...+.
T Consensus 33 ~~~vrea~f~~l~~~~~g--~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~-~~N~~~~~~~~~~~~~~~D~~ 109 (189)
T TIGR00095 33 TRVVRELFFNILRPEIQG--AHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTL-KENLALLKSGEQAEVVRNSAL 109 (189)
T ss_pred hHHHHHHHHHHHHHhcCC--CEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHH-HHHHHHhCCcccEEEEehhHH
Confidence 34445555555532 223 38999999999999999987 688898876443332 2334444543 344444444
Q ss_pred c-CC-C-CC-CccceEEeccccccccc-ChHHHHHHHH--HhccCCeEEEEEcC
Q 036725 262 K-LP-Y-PS-RAFDMAHCSRCLIPWSA-NDGMYMMEID--RVLRPGGYWVLSGP 308 (392)
Q Consensus 262 ~-lp-~-~d-~sFDlV~~~~~l~~~~~-d~~~~L~ei~--RvLkPGG~lvl~~p 308 (392)
+ +. + .. ..||+|+..-- +.. ....++..+. .+|+++|.+++..+
T Consensus 110 ~~l~~~~~~~~~~dvv~~DPP---y~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 110 RALKFLAKKPTFDNVIYLDPP---FFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred HHHHHhhccCCCceEEEECcC---CCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 2 22 1 12 24788876532 221 2244444443 47899999998653
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00014 Score=73.25 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=66.2
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~ 282 (392)
+|||++||+|.++..++.. .|+++|+++..+.. ..+.++.+++....+..++. .+....+.||+|+.. ++
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~-a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD----P~ 134 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETGVEKVTLNDINPDAVEL-IKKNLELNGLENEKVFNKDANALLHEERKFDVVDID----PF 134 (382)
T ss_pred EEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHH-HHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC----CC
Confidence 7999999999999998754 58999887754433 23344455666555555554 321114679999875 33
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEc
Q 036725 283 SANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. .+..++....+.+++||++.++.
T Consensus 135 G-s~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 G-SPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred C-CcHHHHHHHHHHhcCCCEEEEEe
Confidence 2 45678888788899999999974
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.71 E-value=8.2e-05 Score=70.63 Aligned_cols=117 Identities=21% Similarity=0.292 Sum_probs=65.4
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHH--------------H-HHHcCC-
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQ--------------F-ALERGV- 251 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~--------------~-a~~rg~- 251 (392)
.++.+.+.+....-.+.++||||||.-.+-..-+.. +|+..|+++....+-+.. . +...|.
T Consensus 42 ~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~ 121 (256)
T PF01234_consen 42 FLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKR 121 (256)
T ss_dssp HHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCc
Confidence 344444444433333568999999996553322222 788888876543322111 1 111110
Q ss_pred -----------CcEE-EEe-ccc-cCCCCC-----CccceEEecccccccccCh---HHHHHHHHHhccCCeEEEEEc
Q 036725 252 -----------PAVI-GVL-GTI-KLPYPS-----RAFDMAHCSRCLIPWSAND---GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 252 -----------~~~~-~~~-~~~-~lp~~d-----~sFDlV~~~~~l~~~~~d~---~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..+. ++. +.. .-|+.. ..||+|++.+|++...++. ...++.+.++|||||.|++.+
T Consensus 122 ~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 122 EKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp SGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred chhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 0121 122 222 333433 3599999999997766666 478999999999999999964
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0005 Score=70.98 Aligned_cols=105 Identities=18% Similarity=0.152 Sum_probs=70.2
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC-CCCCccceEE----e
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP-YPSRAFDMAH----C 275 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp-~~d~sFDlV~----~ 275 (392)
.+|||+++|.|.=+..+++. .+++.|+++.-+. ...+.....|+.++.....+. .+. ...+.||.|+ |
T Consensus 115 ~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~-~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvDaPC 193 (470)
T PRK11933 115 QRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVK-VLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLDAPC 193 (470)
T ss_pred CEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHH-HHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEcCCC
Confidence 38999999999888887764 5888888764333 334455566877765554443 332 2246799999 5
Q ss_pred cccc---------cccccC--------hHHHHHHHHHhccCCeEEEEEcCCCch
Q 036725 276 SRCL---------IPWSAN--------DGMYMMEIDRVLRPGGYWVLSGPLINW 312 (392)
Q Consensus 276 ~~~l---------~~~~~d--------~~~~L~ei~RvLkPGG~lvl~~p~~~~ 312 (392)
+..- ..|..+ ...+|..+.+.|||||+++.++...+.
T Consensus 194 SG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~ 247 (470)
T PRK11933 194 SGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNR 247 (470)
T ss_pred CCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCH
Confidence 4211 112111 137899999999999999999877644
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00012 Score=66.61 Aligned_cols=91 Identities=20% Similarity=0.259 Sum_probs=58.9
Q ss_pred CCCcceEEEECCcCchHHHHHhhC----C--cEEEeCCccChHHHHHHHHHHcC--------------CCcEEEEecccc
Q 036725 203 SGMVRTALDTGCGVASWGAYLFKK----N--VITMSFAPRDSHEAQVQFALERG--------------VPAVIGVLGTIK 262 (392)
Q Consensus 203 ~~~~~~VLDiGCG~G~~~~~L~~~----~--v~~vd~s~~d~~~a~~~~a~~rg--------------~~~~~~~~~~~~ 262 (392)
+|. +.||+|.|+|+++..++.. . ..|++. .+..++.+++.- .....++.++-+
T Consensus 82 pG~--s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh-----~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr 154 (237)
T KOG1661|consen 82 PGA--SFLDVGSGSGYLTACFARMVGATGGNVHGIEH-----IPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGR 154 (237)
T ss_pred cCc--ceeecCCCccHHHHHHHHHhcCCCccccchhh-----hHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcc
Confidence 554 8999999999999887743 2 255544 444554444321 123445666664
Q ss_pred CCC-CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 263 LPY-PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 263 lp~-~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.-+ +...||.||+..... ...+++...|++||.+++-.
T Consensus 155 ~g~~e~a~YDaIhvGAaa~-------~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 155 KGYAEQAPYDAIHVGAAAS-------ELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred ccCCccCCcceEEEccCcc-------ccHHHHHHhhccCCeEEEee
Confidence 433 467899999974332 33477778899999998843
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00056 Score=66.01 Aligned_cols=111 Identities=17% Similarity=0.179 Sum_probs=71.9
Q ss_pred HHHHHHhhCC-CCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC--------CCcEEEE
Q 036725 191 YIEELASVIP-MDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG--------VPAVIGV 257 (392)
Q Consensus 191 ~i~~l~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg--------~~~~~~~ 257 (392)
....++.+++ ...+..++||=||.|.|..+..+++. +++.+|+++ +.++.+++.- -|.+..+
T Consensus 61 ~yhEml~h~~~~ah~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~-----~Vi~~ar~~l~~~~~~~~dpRv~i~ 135 (282)
T COG0421 61 IYHEMLAHVPLLAHPNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDP-----AVIELARKYLPEPSGGADDPRVEII 135 (282)
T ss_pred HHHHHHHhchhhhCCCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCH-----HHHHHHHHhccCcccccCCCceEEE
Confidence 3334444443 33445579999999999999999987 678887654 4555665431 1334444
Q ss_pred eccc--cCCCCCCccceEEeccccccccc----ChHHHHHHHHHhccCCeEEEEEc
Q 036725 258 LGTI--KLPYPSRAFDMAHCSRCLIPWSA----NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 258 ~~~~--~lp~~d~sFDlV~~~~~l~~~~~----d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.++. -+.-...+||+|++.. ..+..+ ....+++.+.|.|+++|+++.-.
T Consensus 136 i~Dg~~~v~~~~~~fDvIi~D~-tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 136 IDDGVEFLRDCEEKFDVIIVDS-TDPVGPAEALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred eccHHHHHHhCCCcCCEEEEcC-CCCCCcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence 4443 2222234899999763 222111 11689999999999999999963
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00031 Score=63.16 Aligned_cols=68 Identities=21% Similarity=0.180 Sum_probs=44.9
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l 279 (392)
++|+|+|||||.++...+-. .|+++|+++.. .+...+.+.+ +...+.++..+. +. ...||.|+++--+
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a-~ei~r~N~~~-l~g~v~f~~~dv~~~---~~~~dtvimNPPF 118 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASRVLAVDIDPEA-LEIARANAEE-LLGDVEFVVADVSDF---RGKFDTVIMNPPF 118 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHH-HHHHHHHHHh-hCCceEEEEcchhhc---CCccceEEECCCC
Confidence 48999999999877655443 89999998743 3334445555 334455555554 33 5678899887433
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00024 Score=72.95 Aligned_cols=96 Identities=17% Similarity=0.264 Sum_probs=58.6
Q ss_pred ceEEEECCcCchHHHHHhhC--------CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCCCCCCccceEEec
Q 036725 207 RTALDTGCGVASWGAYLFKK--------NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLPYPSRAFDMAHCS 276 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp~~d~sFDlV~~~ 276 (392)
..|||||||+|.+....++. +|++++-++...... .+..+..+. ..+.++.++. .+..| ..+|+|++=
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l-~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTL-QKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHH-HHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHH-HHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 47999999999887554432 789998876433222 223244444 5667777776 45443 489999985
Q ss_pred cccccccc--ChHHHHHHHHHhccCCeEEEE
Q 036725 277 RCLIPWSA--NDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 277 ~~l~~~~~--d~~~~L~ei~RvLkPGG~lvl 305 (392)
..- .+.. -....|....|.|||||.++=
T Consensus 266 lLG-sfg~nEl~pE~Lda~~rfLkp~Gi~IP 295 (448)
T PF05185_consen 266 LLG-SFGDNELSPECLDAADRFLKPDGIMIP 295 (448)
T ss_dssp --B-TTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred ccC-CccccccCHHHHHHHHhhcCCCCEEeC
Confidence 322 2221 224678999999999998764
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00027 Score=62.24 Aligned_cols=111 Identities=20% Similarity=0.218 Sum_probs=75.4
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~ 262 (392)
....+.+++.+....+ .-||++|.|+|.++.+++++ .+++++.++ .......+.- +.+.++.++. .
T Consensus 34 s~lA~~M~s~I~pesg--lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~-----dF~~~L~~~~-p~~~ii~gda~~ 105 (194)
T COG3963 34 SILARKMASVIDPESG--LPVLELGPGTGVITKAILSRGVRPESLTAIEYSP-----DFVCHLNQLY-PGVNIINGDAFD 105 (194)
T ss_pred HHHHHHHHhccCcccC--CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCH-----HHHHHHHHhC-CCccccccchhh
Confidence 4456667777664444 37999999999999999998 556665544 3443333332 3333444443 3
Q ss_pred CC-----CCCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 263 LP-----YPSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 263 lp-----~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+. +.+..||.|+|..-+..++... -++|+++...|++||.++.-.
T Consensus 106 l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqft 156 (194)
T COG3963 106 LRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFT 156 (194)
T ss_pred HHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEE
Confidence 32 5678899999976554554333 589999999999999998854
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00096 Score=59.59 Aligned_cols=100 Identities=18% Similarity=0.269 Sum_probs=66.3
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~ 281 (392)
..+||||||+|..+..|++. -..++|++|. ..++..+.|+.++..... +..+..-.+..++.|+++-+.-..+
T Consensus 45 ~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~-A~~~Tl~TA~~n~~~~~~-V~tdl~~~l~~~~VDvLvfNPPYVp 122 (209)
T KOG3191|consen 45 EICLEIGCGSGVVSTFLASVIGPQALYLATDINPE-ALEATLETARCNRVHIDV-VRTDLLSGLRNESVDVLVFNPPYVP 122 (209)
T ss_pred eeEEEecCCcchHHHHHHHhcCCCceEEEecCCHH-HHHHHHHHHHhcCCccce-eehhHHhhhccCCccEEEECCCcCc
Confidence 37999999999999999887 3567888774 334455566666544322 3333322233489999987743322
Q ss_pred ccc----------------C----hHHHHHHHHHhccCCeEEEEEcC
Q 036725 282 WSA----------------N----DGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 282 ~~~----------------d----~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
-.+ + .++++..+..+|.|.|.|++..-
T Consensus 123 t~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 123 TSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred CCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 111 1 13678888899999999999753
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00038 Score=70.77 Aligned_cols=98 Identities=22% Similarity=0.358 Sum_probs=75.5
Q ss_pred eEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
++|-+|||.-.+...+.+. .|+.+|+++..++..++..+ +..+-......+. .+.|++++||+|+--..+.+..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~--~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA--KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc--cCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 7999999999888888775 89999998887776665555 3334455555555 8999999999999877665544
Q ss_pred cCh---------HHHHHHHHHhccCCeEEEEEc
Q 036725 284 AND---------GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 284 ~d~---------~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+. ...+.|+.|+|++||.++...
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 332 356899999999999987754
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00069 Score=58.00 Aligned_cols=100 Identities=13% Similarity=0.158 Sum_probs=62.9
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCch-HHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVAS-WGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYP 266 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~-~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~ 266 (392)
..+.+.+.++...+ .++||||||+|. ++..|.+. .|+++|+++ ..++.+++.++.. +.++. .-.+.
T Consensus 4 i~~~l~~~~~~~~~--~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~-----~aV~~a~~~~~~~---v~dDlf~p~~~ 73 (134)
T PRK04148 4 IAEFIAENYEKGKN--KKIVELGIGFYFKVAKKLKESGFDVIVIDINE-----KAVEKAKKLGLNA---FVDDLFNPNLE 73 (134)
T ss_pred HHHHHHHhcccccC--CEEEEEEecCCHHHHHHHHHCCCEEEEEECCH-----HHHHHHHHhCCeE---EECcCCCCCHH
Confidence 34455666654333 489999999996 88888876 788887655 3567777777533 44444 22221
Q ss_pred -CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 267 -SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 267 -d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
-..+|+|.+.+. +.+....+.++.+-+ |.-+++.
T Consensus 74 ~y~~a~liysirp----p~el~~~~~~la~~~--~~~~~i~ 108 (134)
T PRK04148 74 IYKNAKLIYSIRP----PRDLQPFILELAKKI--NVPLIIK 108 (134)
T ss_pred HHhcCCEEEEeCC----CHHHHHHHHHHHHHc--CCCEEEE
Confidence 366999998752 235556666666655 3445553
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00058 Score=65.76 Aligned_cols=111 Identities=19% Similarity=0.128 Sum_probs=63.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHH---cCCC--cEEEEe
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALE---RGVP--AVIGVL 258 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~---rg~~--~~~~~~ 258 (392)
...+.++...++... .++|||+|+|+|...-...+. .++++|.++. +.+.++. .... ......
T Consensus 19 ~~vl~El~~r~p~f~--P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~-----~~~l~~~l~~~~~~~~~~~~~~ 91 (274)
T PF09243_consen 19 YRVLSELRKRLPDFR--PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPE-----MLELAKRLLRAGPNNRNAEWRR 91 (274)
T ss_pred HHHHHHHHHhCcCCC--CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHH-----HHHHHHHHHhcccccccchhhh
Confidence 445566666665333 348999999999755544432 6677766554 4444332 1111 110011
Q ss_pred ccc--cCCCCCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 259 GTI--KLPYPSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 259 ~~~--~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
... ..++. ..|+|+++++|....... ..+++.+.+.+.+ +++++.|..
T Consensus 92 ~~~~~~~~~~--~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt 142 (274)
T PF09243_consen 92 VLYRDFLPFP--PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGT 142 (274)
T ss_pred hhhcccccCC--CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCC
Confidence 111 23332 239999999997776422 4666777666655 888887766
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.001 Score=63.46 Aligned_cols=103 Identities=13% Similarity=0.092 Sum_probs=67.3
Q ss_pred HHHHHhhCCC-CCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc--------CCCcEEEEecc
Q 036725 192 IEELASVIPM-DSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER--------GVPAVIGVLGT 260 (392)
Q Consensus 192 i~~l~~~l~~-~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r--------g~~~~~~~~~~ 260 (392)
..+++.+.+. ..+..++||=||.|.|..++.+++. +|+.+|+++. .++.+++. .-|.+..+...
T Consensus 58 YHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~-----Vv~~~k~~lP~~~~~~~DpRv~l~~~~ 132 (262)
T PRK00536 58 ESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEK-----ILDSFISFFPHFHEVKNNKNFTHAKQL 132 (262)
T ss_pred HHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHH-----HHHHHHHHCHHHHHhhcCCCEEEeehh
Confidence 3444444332 2345579999999999999999998 6888877653 44444441 12333333211
Q ss_pred ccCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 261 IKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 261 ~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+ -..++||+|+.... ....+.+.+.|.|+|||.++.-.
T Consensus 133 ~~--~~~~~fDVIIvDs~------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 133 LD--LDIKKYDLIICLQE------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred hh--ccCCcCCEEEEcCC------CChHHHHHHHHhcCCCcEEEECC
Confidence 11 12478999997632 33567799999999999999954
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00068 Score=67.89 Aligned_cols=113 Identities=12% Similarity=0.052 Sum_probs=71.0
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c-C
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K-L 263 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~-l 263 (392)
++.+++.+.+.+... + .++||++||+|.++..|++. .|+++|.++.++..+. +.+...++.++.+..++. . +
T Consensus 192 ~e~l~~~v~~~~~~~-~--~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~-~N~~~~~~~~v~~~~~d~~~~l 267 (362)
T PRK05031 192 NEKMLEWALDATKGS-K--GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ-YNIAANGIDNVQIIRMSAEEFT 267 (362)
T ss_pred HHHHHHHHHHHhhcC-C--CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH-HHHHHhCCCcEEEEECCHHHHH
Confidence 455666666655422 1 26999999999999999876 7999999886655433 455556776666666654 2 2
Q ss_pred C-CC--------------CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 264 P-YP--------------SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 264 p-~~--------------d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+ +. ...||+|+..-- ...-...++..+. +|+++++++..+.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP---R~G~~~~~l~~l~---~~~~ivyvSC~p~ 323 (362)
T PRK05031 268 QAMNGVREFNRLKGIDLKSYNFSTIFVDPP---RAGLDDETLKLVQ---AYERILYISCNPE 323 (362)
T ss_pred HHHhhcccccccccccccCCCCCEEEECCC---CCCCcHHHHHHHH---ccCCEEEEEeCHH
Confidence 1 10 225899987532 1111234444443 4788888886543
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00079 Score=67.19 Aligned_cols=114 Identities=12% Similarity=-0.008 Sum_probs=71.5
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c-
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K- 262 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~- 262 (392)
..+.+++.+.+.+.... . +|||++||+|.++..|++. .|+++|+++.++..+. +.+...++.++.++.++. +
T Consensus 182 ~~~~l~~~v~~~~~~~~-~--~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~-~n~~~~~~~~v~~~~~d~~~~ 257 (353)
T TIGR02143 182 VNIKMLEWACEVTQGSK-G--DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ-YNIAANNIDNVQIIRMSAEEF 257 (353)
T ss_pred HHHHHHHHHHHHhhcCC-C--cEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEEcCHHHH
Confidence 34556666666664222 2 6999999999999999886 7999999886655544 455556776666666654 2
Q ss_pred CC-------C---C-----CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 263 LP-------Y---P-----SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 263 lp-------~---~-----d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++ + . ...||+|+..--. ..-...++..+ ++|+++++++..+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR---~G~~~~~l~~l---~~~~~ivYvsC~p~ 314 (353)
T TIGR02143 258 TQAMNGVREFRRLKGIDLKSYNCSTIFVDPPR---AGLDPDTCKLV---QAYERILYISCNPE 314 (353)
T ss_pred HHHHhhccccccccccccccCCCCEEEECCCC---CCCcHHHHHHH---HcCCcEEEEEcCHH
Confidence 21 1 0 1237999865321 10113444444 45889999986554
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00061 Score=64.70 Aligned_cols=82 Identities=17% Similarity=0.259 Sum_probs=59.7
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc--CCCcEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER--GVPAVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r--g~~~~~~~~~~~-~l 263 (392)
...++.+.+.....+++ +|||||+|.|.++..|+++ .|+++++++. +++..+++ ...+...+.++. ..
T Consensus 16 ~~v~~kIv~~a~~~~~d--~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~-----l~~~L~~~~~~~~n~~vi~~DaLk~ 88 (259)
T COG0030 16 KNVIDKIVEAANISPGD--NVLEIGPGLGALTEPLLERAARVTAIEIDRR-----LAEVLKERFAPYDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHHHHhcCCCCCC--eEEEECCCCCHHHHHHHhhcCeEEEEEeCHH-----HHHHHHHhcccccceEEEeCchhcC
Confidence 44688888888766644 8999999999999999998 7899988653 33333333 235666677776 77
Q ss_pred CCCCC-ccceEEecc
Q 036725 264 PYPSR-AFDMAHCSR 277 (392)
Q Consensus 264 p~~d~-sFDlV~~~~ 277 (392)
++++. .++.|+++.
T Consensus 89 d~~~l~~~~~vVaNl 103 (259)
T COG0030 89 DFPSLAQPYKVVANL 103 (259)
T ss_pred cchhhcCCCEEEEcC
Confidence 77654 688998873
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00046 Score=62.50 Aligned_cols=130 Identities=15% Similarity=0.218 Sum_probs=75.7
Q ss_pred CCeEEecCCCCCCCccHHHHHHHHHhhCCCC--CCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHH
Q 036725 172 GNVFRFPGGGTQFPHGADAYIEELASVIPMD--SGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFA 246 (392)
Q Consensus 172 ~~~~~fp~~g~~f~~~~~~~i~~l~~~l~~~--~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a 246 (392)
|..+..|.+.. ..+..+...+.+.+.+... .+. ++||+-||+|.++...+.+ .++.+|.+..... ...+.+
T Consensus 10 gr~l~~p~~~~-~RPT~drvrealFniL~~~~~~g~--~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~-~i~~N~ 85 (183)
T PF03602_consen 10 GRKLKTPKGDN-TRPTTDRVREALFNILQPRNLEGA--RVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIK-IIKKNL 85 (183)
T ss_dssp T-EEE-TT--T-S-SSSHHHHHHHHHHHHCH-HTT---EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHH-HHHHHH
T ss_pred CCEecCCCCCC-cCCCcHHHHHHHHHHhcccccCCC--eEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHH-HHHHHH
Confidence 44555555432 2344466667777776643 343 8999999999999988887 6888888664332 233344
Q ss_pred HHcCCCc-EEEEecc-c-cCC---CCCCccceEEecccccccccCh--HHHHHHHH--HhccCCeEEEEEcC
Q 036725 247 LERGVPA-VIGVLGT-I-KLP---YPSRAFDMAHCSRCLIPWSAND--GMYMMEID--RVLRPGGYWVLSGP 308 (392)
Q Consensus 247 ~~rg~~~-~~~~~~~-~-~lp---~~d~sFDlV~~~~~l~~~~~d~--~~~L~ei~--RvLkPGG~lvl~~p 308 (392)
..-+... ...+..+ . .++ .....||+|+..- ++.... ..++..+. .+|+++|++++...
T Consensus 86 ~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP---PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 86 EKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP---PYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp HHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-----STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred HHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC---CcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 4445433 3334333 2 222 2478999999874 444332 56777776 78999999999753
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00089 Score=61.96 Aligned_cols=106 Identities=19% Similarity=0.249 Sum_probs=72.9
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc--c
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI--K 262 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~--~ 262 (392)
+++-+++.+. + ++.||||.=+|+-+..++.. .|+++|+.+...... .++.+..|+. .+.++.+.. .
T Consensus 64 fl~~li~~~~---a--k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~-~~~~k~agv~~KI~~i~g~a~es 137 (237)
T KOG1663|consen 64 FLQMLIRLLN---A--KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG-LELVKLAGVDHKITFIEGPALES 137 (237)
T ss_pred HHHHHHHHhC---C--ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh-HHHHHhccccceeeeeecchhhh
Confidence 4444444443 3 38999999999777766654 899999977544443 4555666653 344444432 1
Q ss_pred C-----CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 263 L-----PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 263 l-----p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
| ..+.++||+|+.. +|..+...++.++.++||+||++++.
T Consensus 138 Ld~l~~~~~~~tfDfaFvD----adK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 138 LDELLADGESGTFDFAFVD----ADKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred HHHHHhcCCCCceeEEEEc----cchHHHHHHHHHHHhhcccccEEEEe
Confidence 2 1357899999864 67656678999999999999999995
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00084 Score=63.63 Aligned_cols=102 Identities=20% Similarity=0.190 Sum_probs=64.5
Q ss_pred CcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC---CCcEEEEeccc--cCCCCCC-ccceEE
Q 036725 205 MVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG---VPAVIGVLGTI--KLPYPSR-AFDMAH 274 (392)
Q Consensus 205 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg---~~~~~~~~~~~--~lp~~d~-sFDlV~ 274 (392)
..++||=||.|.|..+..+.+. .++.+|+++..+..+..-+..... -+.+..+.++. -+--..+ +||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 3459999999999999999886 588887766433332222222111 24555566654 2222234 899999
Q ss_pred ecccccccccC----hHHHHHHHHHhccCCeEEEEEc
Q 036725 275 CSRCLIPWSAN----DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 275 ~~~~l~~~~~d----~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....- +.... ...+++.+.+.|+|||++++..
T Consensus 156 ~D~~d-p~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 156 VDLTD-PDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EESSS-TTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EeCCC-CCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 75332 22211 2589999999999999999965
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0018 Score=59.38 Aligned_cols=110 Identities=19% Similarity=0.204 Sum_probs=71.0
Q ss_pred CccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEec
Q 036725 185 PHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLG 259 (392)
Q Consensus 185 ~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~ 259 (392)
..++...+.+|.+......+ ...|+|+|+-.|+|+..++++ .|+++|+.|.++.. .+.++.+
T Consensus 26 RSRAa~KL~el~~k~~i~~~-~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~------------~V~~iq~ 92 (205)
T COG0293 26 RSRAAYKLLELNEKFKLFKP-GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP------------GVIFLQG 92 (205)
T ss_pred cchHHHHHHHHHHhcCeecC-CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC------------CceEEee
Confidence 34555566667666654333 238999999999999998886 48999998765432 3444444
Q ss_pred cccCC---------CCCCccceEEecccc---cccccCh-------HHHHHHHHHhccCCeEEEEEc
Q 036725 260 TIKLP---------YPSRAFDMAHCSRCL---IPWSAND-------GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 260 ~~~lp---------~~d~sFDlV~~~~~l---~~~~~d~-------~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+...+ +....+|+|+|...- -++..|. ..++.-..++|+|||.|++-.
T Consensus 93 d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~ 159 (205)
T COG0293 93 DITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV 159 (205)
T ss_pred eccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence 44221 334557999976332 1121121 245666777999999999953
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0016 Score=65.38 Aligned_cols=93 Identities=11% Similarity=0.119 Sum_probs=66.6
Q ss_pred eEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c-CCCCCCccceEEeccccc
Q 036725 208 TALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K-LPYPSRAFDMAHCSRCLI 280 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~-lp~~d~sFDlV~~~~~l~ 280 (392)
+|||+.||+|..+..++.+ .|+++|+++..+. ...+.++..++..+.....+. . +....+.||+|...
T Consensus 47 ~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~-~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD---- 121 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIEGVREVFANDINPKAVE-SIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDID---- 121 (374)
T ss_pred EEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHH-HHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeC----
Confidence 7999999999999999875 4899988875433 333444555555444555554 2 22224679999865
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEE
Q 036725 281 PWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 281 ~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
++. .+..++..+.+.+++||++.++
T Consensus 122 PfG-s~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 122 PFG-TPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CCC-CcHHHHHHHHHhcccCCEEEEE
Confidence 433 5568999999999999999997
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00061 Score=66.52 Aligned_cols=119 Identities=15% Similarity=0.229 Sum_probs=69.2
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhh-----------CCcEEEeCCccChHHHHHHHHHHcCC--Cc-E
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFK-----------KNVITMSFAPRDSHEAQVQFALERGV--PA-V 254 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~-----------~~v~~vd~s~~d~~~a~~~~a~~rg~--~~-~ 254 (392)
....+.+.+++....+ .+|||-.||+|.|...+.+ ..+.|+|+++....-+...... ++. .. .
T Consensus 32 ~~i~~l~~~~~~~~~~--~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l-~~~~~~~~~ 108 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKG--DSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL-HGIDNSNIN 108 (311)
T ss_dssp HHHHHHHHHHHTT-TT--EEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH-TTHHCBGCE
T ss_pred HHHHHHHHhhhhcccc--ceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh-hcccccccc
Confidence 4566777777754444 3899999999999877765 2688888866544444443332 232 21 2
Q ss_pred EEEeccccCCC-C-CCccceEEeccccccc--c------------------cChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 255 IGVLGTIKLPY-P-SRAFDMAHCSRCLIPW--S------------------ANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 255 ~~~~~~~~lp~-~-d~sFDlV~~~~~l~~~--~------------------~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
....+....+. . ...||+|+++.-+... . .....++..+.+.|++||++.+..|..
T Consensus 109 i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~ 186 (311)
T PF02384_consen 109 IIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNG 186 (311)
T ss_dssp EEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHH
T ss_pred ccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecch
Confidence 33333333332 2 5789999987322111 0 001257888999999999998887643
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00096 Score=63.16 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=56.4
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCC---cEEEEeccc-cC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVP---AVIGVLGTI-KL 263 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~---~~~~~~~~~-~l 263 (392)
..++.|.+..+...++ .||++|.|||.++..|+++ +|+++++++.++.+-..+. +|.| ......++. ..
T Consensus 45 ~v~~~I~~ka~~k~tD--~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv---~gtp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTD--VVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRV---QGTPKSGKLQVLHGDFLKT 119 (315)
T ss_pred HHHHHHHhccCCCCCC--EEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHh---cCCCccceeeEEecccccC
Confidence 4677888777776766 8999999999999999997 8999999887665543322 3444 233444444 33
Q ss_pred CCCCCccceEEec
Q 036725 264 PYPSRAFDMAHCS 276 (392)
Q Consensus 264 p~~d~sFDlV~~~ 276 (392)
++ -.||.++++
T Consensus 120 d~--P~fd~cVsN 130 (315)
T KOG0820|consen 120 DL--PRFDGCVSN 130 (315)
T ss_pred CC--cccceeecc
Confidence 32 248999885
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.013 Score=54.77 Aligned_cols=145 Identities=21% Similarity=0.235 Sum_probs=89.4
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc-cc-CC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT-IK-LP 264 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~-~~-lp 264 (392)
..+...++.+..... .+.+||||+.||.|+..++++ .|+++|+.-. |...-.+.. +.+...... .+ +.
T Consensus 65 ~KL~~ale~F~l~~k-~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~-----Ql~~kLR~d-~rV~~~E~tN~r~l~ 137 (245)
T COG1189 65 LKLEKALEEFELDVK-GKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYG-----QLHWKLRND-PRVIVLERTNVRYLT 137 (245)
T ss_pred HHHHHHHHhcCcCCC-CCEEEEecCCCccHHHHHHHcCCcEEEEEEccCC-----ccCHhHhcC-CcEEEEecCChhhCC
Confidence 345555566654333 358999999999999999998 7899987543 332222333 333333322 22 21
Q ss_pred ---CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCchhhh----hhhcccChHhHHHHHHHHHHHH
Q 036725 265 ---YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINWRTN----YQAWQRPIKELEEEQRKIEEIA 337 (392)
Q Consensus 265 ---~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~~~~~----~~~w~~~~e~l~~~~~~i~~l~ 337 (392)
+ .+..|+|+|.-.++ ....+|..+..+|+|+|-+++-.-|.-.... ..+..+..+........+++.+
T Consensus 138 ~~~~-~~~~d~~v~DvSFI----SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~ 212 (245)
T COG1189 138 PEDF-TEKPDLIVIDVSFI----SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFA 212 (245)
T ss_pred HHHc-ccCCCeEEEEeehh----hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHH
Confidence 2 23678999876553 5568999999999999999886644421111 1222333444444556677777
Q ss_pred HHcCceecc
Q 036725 338 KLLCWEKKH 346 (392)
Q Consensus 338 ~~l~W~~~~ 346 (392)
....|....
T Consensus 213 ~~~g~~~~g 221 (245)
T COG1189 213 KELGFQVKG 221 (245)
T ss_pred hhcCcEEee
Confidence 777886443
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0024 Score=65.30 Aligned_cols=117 Identities=20% Similarity=0.238 Sum_probs=81.7
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL 263 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l 263 (392)
.++.+++...+.+....+. ++||+=||.|.|+..|+++ .|+|+++++..+..+ .+.|+.+++.++.++.++. +.
T Consensus 277 ~~ekl~~~a~~~~~~~~~~--~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A-~~NA~~n~i~N~~f~~~~ae~~ 353 (432)
T COG2265 277 VAEKLYETALEWLELAGGE--RVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAA-QENAAANGIDNVEFIAGDAEEF 353 (432)
T ss_pred HHHHHHHHHHHHHhhcCCC--EEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHH-HHHHHHcCCCcEEEEeCCHHHH
Confidence 4455667777777754444 8999999999999999977 899999998666554 4577778888788887776 33
Q ss_pred CC---CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 264 PY---PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 264 p~---~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.- ....+|.|+..--. .--...+++.+.+ ++|-.++++|-++.
T Consensus 354 ~~~~~~~~~~d~VvvDPPR---~G~~~~~lk~l~~-~~p~~IvYVSCNP~ 399 (432)
T COG2265 354 TPAWWEGYKPDVVVVDPPR---AGADREVLKQLAK-LKPKRIVYVSCNPA 399 (432)
T ss_pred hhhccccCCCCEEEECCCC---CCCCHHHHHHHHh-cCCCcEEEEeCCHH
Confidence 22 24588999864211 1011355555554 57888999987666
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0073 Score=54.58 Aligned_cols=130 Identities=17% Similarity=0.187 Sum_probs=79.1
Q ss_pred CCeEEecCCCCCCCccHHHHHHHHHhhCCC--CCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHH
Q 036725 172 GNVFRFPGGGTQFPHGADAYIEELASVIPM--DSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFA 246 (392)
Q Consensus 172 ~~~~~fp~~g~~f~~~~~~~i~~l~~~l~~--~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a 246 (392)
|..+.+|.+.. ..+..+...+.+.+++.. ..+. ++||+=+|+|.++..-+.+ .++.+|.+...... ..+..
T Consensus 11 gr~L~~p~~~~-~RPT~drVREalFNil~~~~i~g~--~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~-l~~N~ 86 (187)
T COG0742 11 GRKLKTPDGPG-TRPTTDRVREALFNILAPDEIEGA--RVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKI-LKENL 86 (187)
T ss_pred CCcccCCCCCC-cCCCchHHHHHHHHhccccccCCC--EEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHH-HHHHH
Confidence 34455555422 345567788888888875 3444 8999999999999999988 67888775532222 22233
Q ss_pred HHcC--CCcEEEEeccc-cCCCCCC--ccceEEecccccccccCh---HHHHH--HHHHhccCCeEEEEEcC
Q 036725 247 LERG--VPAVIGVLGTI-KLPYPSR--AFDMAHCSRCLIPWSAND---GMYMM--EIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 247 ~~rg--~~~~~~~~~~~-~lp~~d~--sFDlV~~~~~l~~~~~d~---~~~L~--ei~RvLkPGG~lvl~~p 308 (392)
+..+ .....+..+.. -|+-... .||+|+..-- +..+. ...+. +-..+|+|+|.+++...
T Consensus 87 ~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPP---y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~ 155 (187)
T COG0742 87 KALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPP---YAKGLLDKELALLLLEENGWLKPGALIVVEHD 155 (187)
T ss_pred HHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCC---CccchhhHHHHHHHHHhcCCcCCCcEEEEEeC
Confidence 3333 23344444443 3333333 4999998643 32222 22222 24577999999999754
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0095 Score=55.17 Aligned_cols=92 Identities=17% Similarity=0.171 Sum_probs=62.5
Q ss_pred ceEEEECCcCchHHHHHh----hCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCc-cceEEeccccc
Q 036725 207 RTALDTGCGVASWGAYLF----KKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRA-FDMAHCSRCLI 280 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~----~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~s-FDlV~~~~~l~ 280 (392)
.+++|||+|.|.=+..|+ +.+++-+|-..+-+.- ..+.+.+.+++++.++.+.. .+.- +.. ||+|++..+.
T Consensus 69 ~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~F-L~~~~~eL~L~nv~i~~~RaE~~~~-~~~~~D~vtsRAva- 145 (215)
T COG0357 69 KRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAF-LREVKKELGLENVEIVHGRAEEFGQ-EKKQYDVVTSRAVA- 145 (215)
T ss_pred CEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHH-HHHHHHHhCCCCeEEehhhHhhccc-ccccCcEEEeehcc-
Confidence 499999999996665554 2377777765543222 22344567888887777765 3332 223 9999987543
Q ss_pred ccccChHHHHHHHHHhccCCeEEEE
Q 036725 281 PWSANDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 281 ~~~~d~~~~L~ei~RvLkPGG~lvl 305 (392)
....++.-+...||+||.+++
T Consensus 146 ----~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 146 ----SLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ----chHHHHHHHHHhcccCCcchh
Confidence 556677778899999999875
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0041 Score=61.20 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=58.7
Q ss_pred cceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccc
Q 036725 206 VRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~ 282 (392)
..++|||||++|.|+..|.++ .|++||..+.+.+ -+..+.+.....+. +..-+.+.+|+|+|..+
T Consensus 212 g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~--------L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv---- 279 (357)
T PRK11760 212 GMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQS--------LMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV---- 279 (357)
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHh--------hhCCCCEEEEeccCcccCCCCCCCCEEEEecc----
Confidence 348999999999999999998 6888886543211 12224444444443 33222678999999743
Q ss_pred ccChHHHHHHHHHhccCC--eEEEEE
Q 036725 283 SANDGMYMMEIDRVLRPG--GYWVLS 306 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPG--G~lvl~ 306 (392)
..+..++.-+.+.|..| ..+|+.
T Consensus 280 -e~P~rva~lm~~Wl~~g~cr~aIfn 304 (357)
T PRK11760 280 -EKPARVAELMAQWLVNGWCREAIFN 304 (357)
T ss_pred -cCHHHHHHHHHHHHhcCcccEEEEE
Confidence 36677777788888665 456664
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00014 Score=63.09 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=46.3
Q ss_pred ccCCCCCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEcCCCchh
Q 036725 261 IKLPYPSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSGPLINWR 313 (392)
Q Consensus 261 ~~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p~~~~~ 313 (392)
...+|.++|.|+|.+.++++|+.-+. ..++++++|+|||||++-+++|...+.
T Consensus 39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~ 92 (185)
T COG4627 39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFL 92 (185)
T ss_pred hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchh
Confidence 37789999999999999999987544 589999999999999999999888553
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.004 Score=60.55 Aligned_cols=95 Identities=15% Similarity=0.185 Sum_probs=55.5
Q ss_pred cceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHH----cCC-CcEEEEeccc-cCCCCCCccceEEec
Q 036725 206 VRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALE----RGV-PAVIGVLGTI-KLPYPSRAFDMAHCS 276 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~----rg~-~~~~~~~~~~-~lp~~d~sFDlV~~~ 276 (392)
.+.|||+|||+|.++...+.. +|.+++.+. |.+.|++ +.+ ..+..+-+-. ++.+| ++.|+|++-
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~------MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISE 250 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE------MAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISE 250 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCcceEEEEehhH------HHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEec
Confidence 458999999999877666554 788886643 3444433 222 2233333333 44443 568999975
Q ss_pred ccccc-cccChHHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLIP-WSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~~-~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+-.- +.+..-...-..+|.|+|.|..+=+.
T Consensus 251 PMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~ 282 (517)
T KOG1500|consen 251 PMGYMLVNERMLESYLHARKWLKPNGKMFPTV 282 (517)
T ss_pred cchhhhhhHHHHHHHHHHHhhcCCCCcccCcc
Confidence 33211 11111222334569999999987654
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0044 Score=57.37 Aligned_cols=101 Identities=22% Similarity=0.345 Sum_probs=69.5
Q ss_pred CCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCC----CCc
Q 036725 199 IPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYP----SRA 269 (392)
Q Consensus 199 l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~----d~s 269 (392)
++..++. +||-+|..+|+....+.+- .|.+|++++. .-...+..|++| ++++-+..+.+.|.. -+.
T Consensus 69 ~~ik~gs--kVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r-~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 69 IPIKPGS--KVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPR-SMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEM 143 (229)
T ss_dssp -S--TT---EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHH-HHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--
T ss_pred cCCCCCC--EEEEecccCCCccchhhhccCCCCcEEEEEecch-hHHHHHHHhccC--CceeeeeccCCChHHhhccccc
Confidence 3444554 8999999999888877763 6889999985 444567788887 466666777655521 347
Q ss_pred cceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 270 FDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 270 FDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+|+|++. +. -++..+.++.++..-||+||.++++.
T Consensus 144 VDvI~~D-Va--Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 144 VDVIFQD-VA--QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEEE--S--STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEec-CC--ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 9999986 22 22233678888999999999999975
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.014 Score=55.46 Aligned_cols=110 Identities=17% Similarity=0.177 Sum_probs=69.6
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLP 264 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp 264 (392)
+..|..++...+|. +||+-|.|+|+++.++++. ++...|+...-...+.. .-++.++ .++.+...+. ...
T Consensus 94 ia~I~~~L~i~PGs--vV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~e-eFr~hgi~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 94 IAMILSMLEIRPGS--VVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALE-EFREHGIGDNVTVTHRDVCGSG 170 (314)
T ss_pred HHHHHHHhcCCCCC--EEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHH-HHHHhCCCcceEEEEeecccCC
Confidence 45666777777777 8999999999999999886 67778764322222222 2233444 4454444444 433
Q ss_pred --CCCCccceEEecccccccccChHHHHHHHHHhccCCe-EEEEEcCCC
Q 036725 265 --YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGG-YWVLSGPLI 310 (392)
Q Consensus 265 --~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG-~lvl~~p~~ 310 (392)
..+..+|.|+... . .+..++--++.+||.+| +|+--+|.+
T Consensus 171 F~~ks~~aDaVFLDl-P-----aPw~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 171 FLIKSLKADAVFLDL-P-----APWEAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred ccccccccceEEEcC-C-----ChhhhhhhhHHHhhhcCceEEeccHHH
Confidence 3478899998652 2 44446677777898877 555544433
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0076 Score=59.54 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=85.5
Q ss_pred EecCCCCCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC
Q 036725 176 RFPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP 252 (392)
Q Consensus 176 ~fp~~g~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~ 252 (392)
++.-...+|.++...-..++++... .|. +|||+=+|.|.|+..++.. .|+++|++|..+. .+.+.++.+++.
T Consensus 163 ~vD~~Kv~Fsprl~~ER~Rva~~v~--~GE--~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~-~L~eNi~LN~v~ 237 (341)
T COG2520 163 KVDVAKVYFSPRLSTERARVAELVK--EGE--TVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVE-YLKENIRLNKVE 237 (341)
T ss_pred EEchHHeEECCCchHHHHHHHhhhc--CCC--EEEEccCCcccchhhhhhcCCceEEEEecCHHHHH-HHHHHHHhcCcc
Confidence 3333445565555555666777665 354 8999999999999999886 4899999885443 344555555655
Q ss_pred c-EEEEeccc-cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 253 A-VIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 253 ~-~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. +..+.++. ..+...+.||-|++.. +.....++....+.+++||.+.+-.
T Consensus 238 ~~v~~i~gD~rev~~~~~~aDrIim~~-----p~~a~~fl~~A~~~~k~~g~iHyy~ 289 (341)
T COG2520 238 GRVEPILGDAREVAPELGVADRIIMGL-----PKSAHEFLPLALELLKDGGIIHYYE 289 (341)
T ss_pred ceeeEEeccHHHhhhccccCCEEEeCC-----CCcchhhHHHHHHHhhcCcEEEEEe
Confidence 4 55667776 4444448899999863 2244678888999999999998853
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.015 Score=58.04 Aligned_cols=112 Identities=21% Similarity=0.240 Sum_probs=71.9
Q ss_pred hhCCCCCCCcceEEEECCcCchHHHHHhhC--C----cEEEeCCccChHHHHHHHHHHcCCCcEEEEe-ccccCC---CC
Q 036725 197 SVIPMDSGMVRTALDTGCGVASWGAYLFKK--N----VITMSFAPRDSHEAQVQFALERGVPAVIGVL-GTIKLP---YP 266 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~----v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~-~~~~lp---~~ 266 (392)
..+...++. +|||+.++.|.=+..|++. + |+++|+++. -.....+..+..|+.++.... ++..++ ..
T Consensus 150 ~~L~p~pge--~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~-Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 150 LVLDPKPGE--RVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPK-RLKRLRENLKRLGVRNVIVVNKDARRLAELLPG 226 (355)
T ss_pred HHcCCCCcC--EEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHH-HHHHHHHHHHHcCCCceEEEecccccccccccc
Confidence 344444554 9999999999888777775 2 589988763 333355566667887644444 333333 22
Q ss_pred CCccceEEec------cccc-----ccccC----------hHHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 267 SRAFDMAHCS------RCLI-----PWSAN----------DGMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 267 d~sFDlV~~~------~~l~-----~~~~d----------~~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
.+.||.|+.. .++. -|... ...+|....++|||||.++.++....
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 3369999943 1110 11111 13789999999999999999986663
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0032 Score=63.43 Aligned_cols=103 Identities=17% Similarity=0.058 Sum_probs=69.3
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC--cEEEEeccc--cCCC---CCCccceEEec
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI--KLPY---PSRAFDMAHCS 276 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~--~~~~~~~~~--~lp~---~d~sFDlV~~~ 276 (392)
++|||+=|=||.|+.+.+.. .+++||+|...+.-+.. .+.-+|++ .+.++.++. -+.. ...+||+|+..
T Consensus 219 krvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~-N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilD 297 (393)
T COG1092 219 KRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARE-NAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIILD 297 (393)
T ss_pred CeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHH-HHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEEC
Confidence 48999999999999988875 78999888765555444 33334442 234455543 2222 24589999975
Q ss_pred ccc--------cccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 277 RCL--------IPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 277 ~~l--------~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
--- .....+...++..+.++|+|||.+++++...
T Consensus 298 PPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 298 PPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 211 0111233578999999999999999987554
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0055 Score=56.26 Aligned_cols=109 Identities=18% Similarity=0.264 Sum_probs=73.0
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhCC---cEEEeCCccChHHHHHHHHHHcC---CCcEEEEeccc-
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKN---VITMSFAPRDSHEAQVQFALERG---VPAVIGVLGTI- 261 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~---v~~vd~s~~d~~~a~~~~a~~rg---~~~~~~~~~~~- 261 (392)
..+++.+++.+.. +|. +||.||-|-|.....+.++. -+.++..+ ...+.-++.| ..+++...+..
T Consensus 88 tpiMha~A~ai~t-kgg--rvLnVGFGMgIidT~iQe~~p~~H~IiE~hp-----~V~krmr~~gw~ek~nViil~g~We 159 (271)
T KOG1709|consen 88 TPIMHALAEAIST-KGG--RVLNVGFGMGIIDTFIQEAPPDEHWIIEAHP-----DVLKRMRDWGWREKENVIILEGRWE 159 (271)
T ss_pred hHHHHHHHHHHhh-CCc--eEEEeccchHHHHHHHhhcCCcceEEEecCH-----HHHHHHHhcccccccceEEEecchH
Confidence 4466777776653 333 89999999999998888872 23444333 3333333333 35666666654
Q ss_pred -cC-CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 262 -KL-PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 262 -~l-p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
-+ .++|+.||-|.-. ...+.-+|...+.+.+.|+|||+|+|-+.
T Consensus 160 Dvl~~L~d~~FDGI~yD-Ty~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 160 DVLNTLPDKHFDGIYYD-TYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred hhhccccccCcceeEee-chhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 22 3679999999865 33233347778889999999999999774
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.012 Score=57.94 Aligned_cols=112 Identities=16% Similarity=0.232 Sum_probs=66.1
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--------CcEEEeCCccChHHHHHHHHHHcCCCcEE--EEecc
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--------NVITMSFAPRDSHEAQVQFALERGVPAVI--GVLGT 260 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~--~~~~~ 260 (392)
....|++.++ .+. .++|+|||.|.=+..|++. .++++|+|...+..+..+... ...|.+. .+.++
T Consensus 66 ~~~~Ia~~i~--~~~--~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~-~~~p~l~v~~l~gd 140 (319)
T TIGR03439 66 HSSDIAASIP--SGS--MLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL-GNFSHVRCAGLLGT 140 (319)
T ss_pred HHHHHHHhcC--CCC--EEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh-ccCCCeEEEEEEec
Confidence 3455666554 232 7999999999876665543 477787766555444443331 2234332 24454
Q ss_pred c--c---CCC--CCCccceEEecc-cccccccCh-HHHHHHHHH-hccCCeEEEEEc
Q 036725 261 I--K---LPY--PSRAFDMAHCSR-CLIPWSAND-GMYMMEIDR-VLRPGGYWVLSG 307 (392)
Q Consensus 261 ~--~---lp~--~d~sFDlV~~~~-~l~~~~~d~-~~~L~ei~R-vLkPGG~lvl~~ 307 (392)
. . ++- ......+|+... ++-.+.++. ..+|+++.+ .|+|||.|++..
T Consensus 141 y~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 141 YDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred HHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 3 1 221 123456666543 333343222 589999999 999999999964
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0071 Score=63.54 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=17.1
Q ss_pred ceEEEECCcCchHHHHHhhC
Q 036725 207 RTALDTGCGVASWGAYLFKK 226 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~ 226 (392)
.+|||.|||+|.+...++++
T Consensus 33 ~~ilDP~cGsG~fl~~~~~~ 52 (524)
T TIGR02987 33 TKIIDPCCGDGRLIAALLKK 52 (524)
T ss_pred eEEEeCCCCccHHHHHHHHH
Confidence 48999999999999877653
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0061 Score=55.12 Aligned_cols=107 Identities=14% Similarity=0.133 Sum_probs=59.5
Q ss_pred hCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccCh-------HHHHHHHHHHcCCCcEEEEeccc-cCC--
Q 036725 198 VIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDS-------HEAQVQFALERGVPAVIGVLGTI-KLP-- 264 (392)
Q Consensus 198 ~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~-------~~a~~~~a~~rg~~~~~~~~~~~-~lp-- 264 (392)
....+.+. +|+|+=.|.|+|+..+... .=.+..+.+.+. ...+...+++....++..+.... .++
T Consensus 43 FaGlkpg~--tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~p 120 (238)
T COG4798 43 FAGLKPGA--TVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAP 120 (238)
T ss_pred EeccCCCC--EEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCC
Confidence 34445555 8999999999999999875 112223333332 11222222333323322222222 233
Q ss_pred -----CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 265 -----YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 265 -----~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.+..++|+++....+ | ....+++..++++.|||||.+++..+
T Consensus 121 q~~d~~~~~~~yhdmh~k~i-~-~~~A~~vna~vf~~LKPGGv~~V~dH 167 (238)
T COG4798 121 QKLDLVPTAQNYHDMHNKNI-H-PATAAKVNAAVFKALKPGGVYLVEDH 167 (238)
T ss_pred Ccccccccchhhhhhhcccc-C-cchHHHHHHHHHHhcCCCcEEEEEec
Confidence 123344444433322 3 22457899999999999999999753
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.014 Score=53.77 Aligned_cols=118 Identities=12% Similarity=0.176 Sum_probs=61.0
Q ss_pred CCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHH---HHH----HcCC-
Q 036725 184 FPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQ---FAL----ERGV- 251 (392)
Q Consensus 184 f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~---~a~----~rg~- 251 (392)
|.+-....+..+++.+...+++ ..+|||||.|......+-. ..+|+++.+. .+..+.. ..+ ..|.
T Consensus 23 YGEi~~~~~~~il~~~~l~~~d--vF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~-~~~~a~~~~~~~~~~~~~~g~~ 99 (205)
T PF08123_consen 23 YGEISPEFVSKILDELNLTPDD--VFYDLGSGVGNVVFQAALQTGCKKSVGIEILPE-LHDLAEELLEELKKRMKHYGKR 99 (205)
T ss_dssp GGGCHHHHHHHHHHHTT--TT---EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHH-HHHHHHHHHHHHHHHHHHCTB-
T ss_pred eeecCHHHHHHHHHHhCCCCCC--EEEECCCCCCHHHHHHHHHcCCcEEEEEEechH-HHHHHHHHHHHHHHHHHHhhcc
Confidence 3444455667777777765554 8999999999765544432 4889998753 3322221 111 1232
Q ss_pred -CcEEEEeccc-cCCCCC---CccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 252 -PAVIGVLGTI-KLPYPS---RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 252 -~~~~~~~~~~-~lp~~d---~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
..+.+..++. ..++.. ...|+|+++... +.++....|.++..-||+|-++|-.
T Consensus 100 ~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 100 PGKVELIHGDFLDPDFVKDIWSDADVVFVNNTC--FDPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp --EEEEECS-TTTHHHHHHHGHC-SEEEE--TT--T-HHHHHHHHHHHTTS-TT-EEEES
T ss_pred cccceeeccCccccHhHhhhhcCCCEEEEeccc--cCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 2333334433 111110 236999998654 4445566778888889998887653
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0064 Score=60.71 Aligned_cols=70 Identities=23% Similarity=0.312 Sum_probs=47.8
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT 260 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~ 260 (392)
..+.+++.+.+.+...++ .|||+=||.|.++..|++. .|+|++..+..+.. +.+.|+.+++.++.+...+
T Consensus 181 ~~~~l~~~~~~~l~~~~~---~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~-A~~Na~~N~i~n~~f~~~~ 252 (352)
T PF05958_consen 181 QNEKLYEQALEWLDLSKG---DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVED-ARENAKLNGIDNVEFIRGD 252 (352)
T ss_dssp HHHHHHHHHHHHCTT-TT---EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHH-HHHHHHHTT--SEEEEE--
T ss_pred HHHHHHHHHHHHhhcCCC---cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHH-HHHHHHHcCCCcceEEEee
Confidence 455677888888875433 6999999999999999987 89999887754444 3446667788877776543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.036 Score=50.55 Aligned_cols=101 Identities=20% Similarity=0.314 Sum_probs=72.9
Q ss_pred CCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCC----CCcc
Q 036725 199 IPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYP----SRAF 270 (392)
Q Consensus 199 l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~----d~sF 270 (392)
++...++ +||=+|..+|+....+.+- .+.++++++....+ .+..|.+| ++++-++.+.+.|.. -+..
T Consensus 72 ~pi~~g~--~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~re-Ll~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~V 146 (231)
T COG1889 72 FPIKEGS--KVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRE-LLDVAEKR--PNIIPILEDARKPEKYRHLVEKV 146 (231)
T ss_pred CCcCCCC--EEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHH-HHHHHHhC--CCceeeecccCCcHHhhhhcccc
Confidence 3444554 8999999999888877764 58999999976655 66677776 456667777776632 3568
Q ss_pred ceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 271 DMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 271 DlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
|+|+.. +. -+...+.+..++..-||+||+++++.
T Consensus 147 Dviy~D-VA--Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 147 DVIYQD-VA--QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cEEEEe-cC--CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 999875 22 22123567788999999999888864
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.015 Score=56.21 Aligned_cols=79 Identities=22% Similarity=0.368 Sum_probs=53.1
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCchhhhhhhcccChHhHHHHHHHHHHHHHHcCceecce
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHE 347 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~~~~~~~~w~~~~e~l~~~~~~i~~l~~~l~W~~~~~ 347 (392)
++||+|+..+ ++.-..+.-.++..|..+|||||+|+=.+|-....+...+.. ..-.++-..+.+..+++.+.|+...+
T Consensus 258 ~~~d~VvTcf-FIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~-~~~siEls~edl~~v~~~~GF~~~ke 335 (369)
T KOG2798|consen 258 GSYDVVVTCF-FIDTAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVE-NEMSIELSLEDLKRVASHRGFEVEKE 335 (369)
T ss_pred CccceEEEEE-EeechHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCc-ccccccccHHHHHHHHHhcCcEEEEe
Confidence 4699999764 334444667899999999999999999988774433322211 11122223355777888999988777
Q ss_pred e
Q 036725 348 K 348 (392)
Q Consensus 348 ~ 348 (392)
+
T Consensus 336 ~ 336 (369)
T KOG2798|consen 336 R 336 (369)
T ss_pred e
Confidence 6
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0051 Score=53.11 Aligned_cols=84 Identities=19% Similarity=0.186 Sum_probs=51.9
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHh--h-CCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLF--K-KNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSR 268 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~--~-~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~ 268 (392)
+..+-+-.....| +.++|+|||.|.+..... + ..+.|+|+.+..+ +-..+.+.+..+..-..+.+-..+-+..+
T Consensus 37 ~~~Ih~TygdiEg--kkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeAL-EIf~rNaeEfEvqidlLqcdildle~~~g 113 (185)
T KOG3420|consen 37 LYTIHNTYGDIEG--KKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEAL-EIFTRNAEEFEVQIDLLQCDILDLELKGG 113 (185)
T ss_pred HHHHHhhhccccC--cchhhhcCchhhhHHHhhcCCCceEEeeecCHHHH-HHHhhchHHhhhhhheeeeeccchhccCC
Confidence 3333344443344 489999999997763333 2 3799999987433 33445566655555444444445556678
Q ss_pred ccceEEeccc
Q 036725 269 AFDMAHCSRC 278 (392)
Q Consensus 269 sFDlV~~~~~ 278 (392)
.||.++.+.-
T Consensus 114 ~fDtaviNpp 123 (185)
T KOG3420|consen 114 IFDTAVINPP 123 (185)
T ss_pred eEeeEEecCC
Confidence 9999998753
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.015 Score=56.27 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=63.1
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC--CcEEEEeccc-c-CC--CCCCccceEEecc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV--PAVIGVLGTI-K-LP--YPSRAFDMAHCSR 277 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~--~~~~~~~~~~-~-lp--~~d~sFDlV~~~~ 277 (392)
++|||+=|=||.|+.+.+.. .++.||.|...+..+..+.+ -+++ ..+.++..+. . +. -..++||+|++.-
T Consensus 125 krvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~-lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 125 KRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAA-LNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp CEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHH-HTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred CceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH-HcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 39999999999999987765 68899887765555444333 3343 3455555554 2 21 1246899999752
Q ss_pred ccc-----ccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 278 CLI-----PWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 278 ~l~-----~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
-.. ....+...++..+.++|+|||++++.+...
T Consensus 204 PsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 204 PSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 111 111233578889999999999999876443
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.033 Score=60.63 Aligned_cols=119 Identities=14% Similarity=0.055 Sum_probs=68.6
Q ss_pred HHHHHHHHhhCCC-CCCCcceEEEECCcCchHHHHHhh------------------------------------------
Q 036725 189 DAYIEELASVIPM-DSGMVRTALDTGCGVASWGAYLFK------------------------------------------ 225 (392)
Q Consensus 189 ~~~i~~l~~~l~~-~~~~~~~VLDiGCG~G~~~~~L~~------------------------------------------ 225 (392)
+.+...++.+... ..+ ..++|.+||+|++....+.
T Consensus 175 etlAaa~l~~a~w~~~~--~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~ 252 (702)
T PRK11783 175 ENLAAAILLRSGWPQEG--TPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL 252 (702)
T ss_pred HHHHHHHHHHcCCCCCC--CeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 4455555555443 223 3899999999998865532
Q ss_pred ----CCcEEEeCCccChHHHHHHHHHHcCCCc-EEEEeccc-cCCCC--CCccceEEecccccc-cc--cChHHHHHHHH
Q 036725 226 ----KNVITMSFAPRDSHEAQVQFALERGVPA-VIGVLGTI-KLPYP--SRAFDMAHCSRCLIP-WS--ANDGMYMMEID 294 (392)
Q Consensus 226 ----~~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~~~~-~lp~~--d~sFDlV~~~~~l~~-~~--~d~~~~L~ei~ 294 (392)
..++|+|+++..+..+.. .+...|+.. +.+..++. +++.+ .++||+|+++.-... +. .+...+..++-
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~-N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg 331 (702)
T PRK11783 253 AELPSKFYGSDIDPRVIQAARK-NARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLG 331 (702)
T ss_pred cccCceEEEEECCHHHHHHHHH-HHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHH
Confidence 037888887765554433 444556643 45555555 55543 468999999842211 11 11233444444
Q ss_pred Hhc---cCCeEEEEEcCCC
Q 036725 295 RVL---RPGGYWVLSGPLI 310 (392)
Q Consensus 295 RvL---kPGG~lvl~~p~~ 310 (392)
+.| .+|+.+++.++..
T Consensus 332 ~~lk~~~~g~~~~llt~~~ 350 (702)
T PRK11783 332 RRLKQQFGGWNAALFSSSP 350 (702)
T ss_pred HHHHHhCCCCeEEEEeCCH
Confidence 444 4898887765433
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0067 Score=58.97 Aligned_cols=82 Identities=12% Similarity=0.160 Sum_probs=52.2
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP 264 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp 264 (392)
+++.+++.+...++. .+||.+||.|.++..+++. .|+++|.++.++..+...... ...+.++.++. .+.
T Consensus 7 ll~Evl~~L~~~pg~--~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 7 LLDEVVDALAIKPDG--IYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLK 81 (296)
T ss_pred cHHHHHHhhCCCCCC--EEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHH
Confidence 345566666544444 8999999999999999876 588888876544443322211 24566666665 321
Q ss_pred --CCC--CccceEEecc
Q 036725 265 --YPS--RAFDMAHCSR 277 (392)
Q Consensus 265 --~~d--~sFDlV~~~~ 277 (392)
.++ .+||.|+...
T Consensus 82 ~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 82 EVLAEGLGKVDGILLDL 98 (296)
T ss_pred HHHHcCCCccCEEEECC
Confidence 112 2799998763
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.01 Score=58.13 Aligned_cols=117 Identities=17% Similarity=0.181 Sum_probs=60.5
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc---cc
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT---IK 262 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~---~~ 262 (392)
.++.+....+... .++|||+|.|.|.-..++-.- .++.++.++ .+.+-.-..+..-.....-...++ .+
T Consensus 101 sL~~L~~~~~dfa--pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp-~lrkV~~tl~~nv~t~~td~r~s~vt~dR 177 (484)
T COG5459 101 SLDELQKRVPDFA--PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP-ALRKVGDTLAENVSTEKTDWRASDVTEDR 177 (484)
T ss_pred HHHHHHHhCCCcC--cchhhccCCCCchhhhhhcccCCCchhhhhhccCH-HHHHHHHHHHhhcccccCCCCCCccchhc
Confidence 4455555554333 347999999998755544432 333343333 111111112221111111111111 14
Q ss_pred CCCC-CCccceEEecccccccccCh--HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 263 LPYP-SRAFDMAHCSRCLIPWSAND--GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 263 lp~~-d~sFDlV~~~~~l~~~~~d~--~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++++ ...|++|+...-+.+..... ...++.+..+++|||.|++..++.
T Consensus 178 l~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 178 LSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred cCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 4444 45677777655444432111 347888999999999999987655
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.047 Score=47.03 Aligned_cols=97 Identities=15% Similarity=0.086 Sum_probs=54.6
Q ss_pred cceEEEECCcCchHHHHHhh-----C---CcEEEeCCccChHHHHHHHHHHcC--C-CcEEEEeccccCCCCCCccceEE
Q 036725 206 VRTALDTGCGVASWGAYLFK-----K---NVITMSFAPRDSHEAQVQFALERG--V-PAVIGVLGTIKLPYPSRAFDMAH 274 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~-----~---~v~~vd~s~~d~~~a~~~~a~~rg--~-~~~~~~~~~~~lp~~d~sFDlV~ 274 (392)
..+|+|+|||-|+++..|+. . .|+++|..+.... ...+.+++.+ . ....+.......-......++++
T Consensus 26 ~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 104 (141)
T PF13679_consen 26 CITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVE-SAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDILV 104 (141)
T ss_pred CCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHH-HHHHHHHHhcchhhccchhhccchhhhcccCCCeEEE
Confidence 45899999999999999988 4 7899988765433 3333444433 1 12222222221111245566776
Q ss_pred ecccccccccCh-HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 275 CSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 275 ~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.. |--.+. ..+|+-+.+ ++-.+++..|--
T Consensus 105 gL----HaCG~Ls~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 105 GL----HACGDLSDRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred Ee----ecccchHHHHHHHHHH---cCCCEEEEcCCc
Confidence 43 444344 445555544 666666555443
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.012 Score=56.09 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=64.6
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc--CCCcEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER--GVPAVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r--g~~~~~~~~~~~-~l 263 (392)
...++.+++.+....+. .|||||.|.|.++..|++. ++++++.++. ..+...++ ..+++..+.++. .+
T Consensus 16 ~~~~~~Iv~~~~~~~~~--~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~-----~~~~L~~~~~~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGD--TVLEIGPGPGALTRELLKRGKRVIAVEIDPD-----LAKHLKERFASNPNVEVINGDFLKW 88 (262)
T ss_dssp HHHHHHHHHHHTCGTTS--EEEEESSTTSCCHHHHHHHSSEEEEEESSHH-----HHHHHHHHCTTCSSEEEEES-TTTS
T ss_pred HHHHHHHHHhcCCCCCC--EEEEeCCCCccchhhHhcccCcceeecCcHh-----HHHHHHHHhhhcccceeeecchhcc
Confidence 56788888888755444 8999999999999999886 7999988552 34444443 235666666665 65
Q ss_pred CCCC---CccceEEecccccccccChHHHHHHHHHhccC
Q 036725 264 PYPS---RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRP 299 (392)
Q Consensus 264 p~~d---~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkP 299 (392)
..++ +.-..|+++. ++. -...++..+...-+.
T Consensus 89 ~~~~~~~~~~~~vv~Nl---Py~-is~~il~~ll~~~~~ 123 (262)
T PF00398_consen 89 DLYDLLKNQPLLVVGNL---PYN-ISSPILRKLLELYRF 123 (262)
T ss_dssp CGGGHCSSSEEEEEEEE---TGT-GHHHHHHHHHHHGGG
T ss_pred ccHHhhcCCceEEEEEe---ccc-chHHHHHHHhhcccc
Confidence 5443 3455666652 442 334566666664344
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0032 Score=55.25 Aligned_cols=101 Identities=17% Similarity=0.249 Sum_probs=60.2
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcC----CCcEE---EEeccccCCCCCCccceEE
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERG----VPAVI---GVLGTIKLPYPSRAFDMAH 274 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg----~~~~~---~~~~~~~lp~~d~sFDlV~ 274 (392)
+.||++|.|.-.++..|... .|...| +.+.+...++....+. +.... ......+......+||+|+
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltd--gne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTD--GNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEec--CCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 58999999966655555443 344443 3333333333332222 11110 0000112223356899999
Q ss_pred ecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 275 CSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 275 ~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
|+.|+ .+.+....+++-|.+.|||.|..++..|-.
T Consensus 109 aADCl-FfdE~h~sLvdtIk~lL~p~g~Al~fsPRR 143 (201)
T KOG3201|consen 109 AADCL-FFDEHHESLVDTIKSLLRPSGRALLFSPRR 143 (201)
T ss_pred eccch-hHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence 99998 355455789999999999999999887654
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.036 Score=54.79 Aligned_cols=130 Identities=22% Similarity=0.227 Sum_probs=78.5
Q ss_pred EecCCCCCCCccHHH-HHHHHHhhCCCC-CCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHH--
Q 036725 176 RFPGGGTQFPHGADA-YIEELASVIPMD-SGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFAL-- 247 (392)
Q Consensus 176 ~fp~~g~~f~~~~~~-~i~~l~~~l~~~-~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~-- 247 (392)
-+-+||-||...-+. |.+.+. ..+.. -...++||=+|.|.|-.+..|.+. +|+-+|++|.+++-+....+.
T Consensus 259 LYldG~LQfsTrDe~RYhEsLV-~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~ 337 (508)
T COG4262 259 LYLDGGLQFSTRDEYRYHESLV-YPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRA 337 (508)
T ss_pred EEEcCceeeeechhhhhhheee-ecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhh
Confidence 455577777655444 333332 22221 123468999999999999999986 788999988766544322221
Q ss_pred -HcC---CCcEEEEeccc-c-CCCCCCccceEEecccccccccCh-----HHHHHHHHHhccCCeEEEEEc
Q 036725 248 -ERG---VPAVIGVLGTI-K-LPYPSRAFDMAHCSRCLIPWSAND-----GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 248 -~rg---~~~~~~~~~~~-~-lp~~d~sFDlV~~~~~l~~~~~d~-----~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+.+ -|.+..+.++. . +--..+.||.|+... ..+-.+.. ..+..-+.|.|+++|.+++-.
T Consensus 338 ~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 338 LNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred hccCCccCCeeEEEeccHHHHHHhhcccccEEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 112 24555555554 2 222356899999752 11111111 256677888999999999954
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.038 Score=55.63 Aligned_cols=76 Identities=22% Similarity=0.351 Sum_probs=44.8
Q ss_pred ceEEEECCcCchHHHHHhhC-------------------CcEEEeCCccChHHHHHHHHHH-------------cCCCc-
Q 036725 207 RTALDTGCGVASWGAYLFKK-------------------NVITMSFAPRDSHEAQVQFALE-------------RGVPA- 253 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-------------------~v~~vd~s~~d~~~a~~~~a~~-------------rg~~~- 253 (392)
-+|+|+|||+|..+..+... .+.--|+-..|.+.-......- .+...
T Consensus 65 ~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~ 144 (386)
T PLN02668 65 FTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSY 144 (386)
T ss_pred eeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCce
Confidence 47999999999766544221 2344466666666544433210 11111
Q ss_pred -EEEEeccc-cCCCCCCccceEEecccccccc
Q 036725 254 -VIGVLGTI-KLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 254 -~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
+..+-++. .--||+++.+++|++.++ ||.
T Consensus 145 f~~gvpGSFY~RLfP~~Slh~~~Ss~sl-HWL 175 (386)
T PLN02668 145 FAAGVPGSFYRRLFPARSIDVFHSAFSL-HWL 175 (386)
T ss_pred EEEecCccccccccCCCceEEEEeeccc-eec
Confidence 12222343 444899999999999888 664
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.016 Score=59.47 Aligned_cols=71 Identities=21% Similarity=0.353 Sum_probs=55.4
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT 260 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~ 260 (392)
.++.+...+.+.+....+ ..+||+-||+|.++..++++ .|+|+++++.++..| ...|..+|+.+..++.+.
T Consensus 367 ~aevLys~i~e~~~l~~~--k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA-~~nA~~NgisNa~Fi~gq 439 (534)
T KOG2187|consen 367 AAEVLYSTIGEWAGLPAD--KTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDA-EKNAQINGISNATFIVGQ 439 (534)
T ss_pred HHHHHHHHHHHHhCCCCC--cEEEEEeecCCceehhhhccccceeeeecChhhcchh-hhcchhcCccceeeeecc
Confidence 455556666677765555 48999999999999999998 899999998666654 447788898888887773
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.036 Score=53.67 Aligned_cols=102 Identities=23% Similarity=0.300 Sum_probs=66.6
Q ss_pred eEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC-C-CCCCccceEEe----
Q 036725 208 TALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL-P-YPSRAFDMAHC---- 275 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l-p-~~d~sFDlV~~---- 275 (392)
.|||+.+|.|.=+..+++. .+++.|++..-+. ...+.+.+.|..++.....+. .. + .....||.|+.
T Consensus 88 ~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~-~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPC 166 (283)
T PF01189_consen 88 RVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLK-RLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVDAPC 166 (283)
T ss_dssp EEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHH-HHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEECSC
T ss_pred cccccccCCCCceeeeeecccchhHHHHhccCHHHHH-HHHHHHHhcCCceEEEEeeccccccccccccccchhhcCCCc
Confidence 8999999999877777664 6889988764332 234455566877776664443 22 2 22446999994
Q ss_pred ccc--ccc-----c--cc-C-------hHHHHHHHHHhc----cCCeEEEEEcCCC
Q 036725 276 SRC--LIP-----W--SA-N-------DGMYMMEIDRVL----RPGGYWVLSGPLI 310 (392)
Q Consensus 276 ~~~--l~~-----~--~~-d-------~~~~L~ei~RvL----kPGG~lvl~~p~~ 310 (392)
+.. +.. | .+ + ...+|..+.+.| ||||+++.++...
T Consensus 167 Sg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 167 SGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp CCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred cchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 211 110 0 00 0 127899999999 9999999997555
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.015 Score=51.50 Aligned_cols=68 Identities=26% Similarity=0.315 Sum_probs=42.7
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cC-C-CCCCc-cceEEec
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KL-P-YPSRA-FDMAHCS 276 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~l-p-~~d~s-FDlV~~~ 276 (392)
+|||+.||.|..+..+++. .|+++|+++.-+.- ....|.-.|+ .++.++.++. .+ + +..+. ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~-a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLEC-AKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHH-HHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHH-HHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 7999999999999999998 79999987643333 2334555664 4678888876 22 1 22222 8999976
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.083 Score=48.00 Aligned_cols=95 Identities=20% Similarity=0.177 Sum_probs=57.0
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
++|||+|.|+|.-+..-+.. .++..|+.+ ....+..-.++.+|+... +...+ +-..+..||+|+.+.++..-.
T Consensus 81 krVLd~gagsgLvaIAaa~aGA~~v~a~d~~P-~~~~ai~lNa~angv~i~-~~~~d--~~g~~~~~Dl~LagDlfy~~~ 156 (218)
T COG3897 81 KRVLDLGAGSGLVAIAAARAGAAEVVAADIDP-WLEQAIRLNAAANGVSIL-FTHAD--LIGSPPAFDLLLAGDLFYNHT 156 (218)
T ss_pred ceeeecccccChHHHHHHHhhhHHHHhcCCCh-HHHHHhhcchhhccceeE-Eeecc--ccCCCcceeEEEeeceecCch
Confidence 59999999999766655554 778888865 233333334444553222 22222 222678899999987652211
Q ss_pred cChHHHHHHHHHhccCCeEEEEEc
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
...+++. +.+.|+..|.-++++
T Consensus 157 -~a~~l~~-~~~~l~~~g~~vlvg 178 (218)
T COG3897 157 -EADRLIP-WKDRLAEAGAAVLVG 178 (218)
T ss_pred -HHHHHHH-HHHHHHhCCCEEEEe
Confidence 2345566 666666666666654
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.0079 Score=48.83 Aligned_cols=93 Identities=18% Similarity=0.158 Sum_probs=38.4
Q ss_pred EEECCcCchHHHHHhhC-------CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc--cCC-CCCCccceEEeccc
Q 036725 210 LDTGCGVASWGAYLFKK-------NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI--KLP-YPSRAFDMAHCSRC 278 (392)
Q Consensus 210 LDiGCG~G~~~~~L~~~-------~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~--~lp-~~d~sFDlV~~~~~ 278 (392)
||||+..|..+..+++. .++++|..+. .+...+..++.++ ..+.++.++. .++ +++++||+|+...
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~--~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg- 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG--DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG- 77 (106)
T ss_dssp --------------------------EEEESS--------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred CccccccccccccccccccccccCCEEEEECCCc--ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-
Confidence 68999999888777763 4788888653 1122223333333 3455555554 121 3357899999763
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 279 LIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 279 l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
- |..+.....+..+.+.|+|||++++.
T Consensus 78 ~-H~~~~~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 78 D-HSYEAVLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred C-CCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 2 33334567888999999999999884
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.18 Score=50.03 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=41.3
Q ss_pred CCCcceEEEECCcCchHHHHHhhC--------------------CcEEEeCCccChHHHHHHHHHHc----CCCcE--EE
Q 036725 203 SGMVRTALDTGCGVASWGAYLFKK--------------------NVITMSFAPRDSHEAQVQFALER----GVPAV--IG 256 (392)
Q Consensus 203 ~~~~~~VLDiGCG~G~~~~~L~~~--------------------~v~~vd~s~~d~~~a~~~~a~~r----g~~~~--~~ 256 (392)
.+..-+|+|+||..|..+..+... .|.--|+-..|.+.-........ ..+.+ ..
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 334458999999999777655432 24455777777765444333221 01222 23
Q ss_pred Eeccc-cCCCCCCccceEEecccccccc
Q 036725 257 VLGTI-KLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 257 ~~~~~-~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
+-++. .--||++|.|+++++.++ ||.
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~al-HWL 120 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYAL-HWL 120 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-T-TB-
T ss_pred cCchhhhccCCCCceEEEEEechh-hhc
Confidence 44554 445889999999999887 553
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.28 Score=49.16 Aligned_cols=112 Identities=14% Similarity=0.149 Sum_probs=72.5
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhCC-------------------------------------------
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKN------------------------------------------- 227 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~------------------------------------------- 227 (392)
+...|+.+..-.++ ..++|-=||+|++....+...
T Consensus 179 LAaAil~lagw~~~--~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 179 LAAAILLLAGWKPD--EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHcCCCCC--CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 44444444443333 479999999999887655431
Q ss_pred cEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-cCCCCCCccceEEecccccccccC------h----HHHHHHHHH
Q 036725 228 VITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSAN------D----GMYMMEIDR 295 (392)
Q Consensus 228 v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~d------~----~~~L~ei~R 295 (392)
++|+|+++..+..|. ..|++.|+. .+.+...+. .++-+-+.+|+|+|+. +|... . ..+.+.+.+
T Consensus 257 ~~G~Did~r~i~~Ak-~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NP---PYGeRlg~~~~v~~LY~~fg~~lk~ 332 (381)
T COG0116 257 IYGSDIDPRHIEGAK-ANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNP---PYGERLGSEALVAKLYREFGRTLKR 332 (381)
T ss_pred EEEecCCHHHHHHHH-HHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCC---CcchhcCChhhHHHHHHHHHHHHHH
Confidence 669999887666544 366777764 455555555 5553337899999984 33211 1 245566777
Q ss_pred hccCCeEEEEEcC
Q 036725 296 VLRPGGYWVLSGP 308 (392)
Q Consensus 296 vLkPGG~lvl~~p 308 (392)
.++-.+.++++++
T Consensus 333 ~~~~ws~~v~tt~ 345 (381)
T COG0116 333 LLAGWSRYVFTTS 345 (381)
T ss_pred HhcCCceEEEEcc
Confidence 7887888998864
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.5 Score=45.20 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=50.3
Q ss_pred CcceEEEECCcCc--hHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCc--EEEEeccccCC---CC------
Q 036725 205 MVRTALDTGCGVA--SWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPA--VIGVLGTIKLP---YP------ 266 (392)
Q Consensus 205 ~~~~VLDiGCG~G--~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~--~~~~~~~~~lp---~~------ 266 (392)
.++..||||||-- .....++++ +|.-+|..|.-+.-+ .+.-.+.+. ..++.++.+-| +.
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~---ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHA---RALLADNPRGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCC---HHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHH---HhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHh
Confidence 4678999999943 344455443 788899876433222 122222233 55566554322 00
Q ss_pred ----CCccceEEeccccccccc--ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 267 ----SRAFDMAHCSRCLIPWSA--NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 267 ----d~sFDlV~~~~~l~~~~~--d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++.+ .|+...++++..+ ++..++..+...|.||.+|+++.-
T Consensus 145 ~lD~~rPV-avll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~ 191 (267)
T PF04672_consen 145 LLDFDRPV-AVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHA 191 (267)
T ss_dssp C--TTS---EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred cCCCCCCe-eeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEec
Confidence 2223 3334446655543 457999999999999999999853
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.41 Score=44.11 Aligned_cols=94 Identities=15% Similarity=0.057 Sum_probs=56.8
Q ss_pred EEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccccCCCCCCc-cceEEeccccccc
Q 036725 209 ALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKLPYPSRA-FDMAHCSRCLIPW 282 (392)
Q Consensus 209 VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~~lp~~d~s-FDlV~~~~~l~~~ 282 (392)
|.||||--|++..+|.++ .++++|+++.-+..+.... ...++ ..+....++---+++.+. .|.|+...+--.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i-~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENI-AKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHH-HHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH-HHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH-
Confidence 689999999999999998 6889999876555544433 34453 456666666422344443 788887643211
Q ss_pred ccChHHHHHHHHHhccCCeEEEEE
Q 036725 283 SANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
-...+|.+....++..-.|++.
T Consensus 79 --lI~~ILe~~~~~~~~~~~lILq 100 (205)
T PF04816_consen 79 --LIIEILEAGPEKLSSAKRLILQ 100 (205)
T ss_dssp --HHHHHHHHTGGGGTT--EEEEE
T ss_pred --HHHHHHHhhHHHhccCCeEEEe
Confidence 2256777777777776777775
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.3 Score=47.03 Aligned_cols=100 Identities=12% Similarity=0.201 Sum_probs=52.1
Q ss_pred cceEEEECCcCchHHHHHhhC------CcEEEeCCccChHHHHHHHHH-HcCC-CcEEEEeccc-cCCCCCCccceEEec
Q 036725 206 VRTALDTGCGVASWGAYLFKK------NVITMSFAPRDSHEAQVQFAL-ERGV-PAVIGVLGTI-KLPYPSRAFDMAHCS 276 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~------~v~~vd~s~~d~~~a~~~~a~-~rg~-~~~~~~~~~~-~lp~~d~sFDlV~~~ 276 (392)
.++|+=||+|.=-++..+... .|+++|+++.....+.. ... ..++ ..+.+..++. ..+..-..||+|+..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~-lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARR-LVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHH-HHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH-HHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 458999999987666655543 37788886643333221 222 1222 3455666555 455444689999976
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 277 RCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 277 ~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.....-.++...+|..+.+.++||..+++-
T Consensus 200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 432222235589999999999999999985
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.12 Score=44.03 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=31.1
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcE
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAV 254 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~ 254 (392)
++||+|||.|.++..+++. +++++|.++......+ +.....+.+++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~-~~~~~n~~~~v 50 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE-ENVKLNNLPNV 50 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH-HHHHHcCCCcE
Confidence 4899999999999988875 4888888765444333 23333444433
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.47 Score=44.54 Aligned_cols=98 Identities=17% Similarity=0.235 Sum_probs=66.7
Q ss_pred CCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCC----CCccce
Q 036725 202 DSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYP----SRAFDM 272 (392)
Q Consensus 202 ~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~----d~sFDl 272 (392)
.++. +||=+|+++|+......+- -|++++++.. .....+.+|++|- +++-+..+.+-|.. -.-.|+
T Consensus 155 kpGs--KVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~r-sGRdL~nmAkkRt--NiiPIiEDArhP~KYRmlVgmVDv 229 (317)
T KOG1596|consen 155 KPGS--KVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHR-SGRDLINMAKKRT--NIIPIIEDARHPAKYRMLVGMVDV 229 (317)
T ss_pred cCCc--eEEEeeccCCceeehhhcccCCCceEEEEEeccc-chHHHHHHhhccC--CceeeeccCCCchheeeeeeeEEE
Confidence 3454 8999999999888777764 5789999874 4445666777773 44445555555532 236788
Q ss_pred EEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 273 AHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 273 V~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
|++.- . -++....+..+...-||+||-|+++.
T Consensus 230 IFaDv-a--qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 230 IFADV-A--QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred EeccC-C--CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 88752 2 22122456677888999999999986
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.42 Score=48.22 Aligned_cols=106 Identities=15% Similarity=0.114 Sum_probs=66.3
Q ss_pred CCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC---CCCCccceE
Q 036725 203 SGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP---YPSRAFDMA 273 (392)
Q Consensus 203 ~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp---~~d~sFDlV 273 (392)
+....+|||+.+..|.=+.+++.. -|++.|.+.. --....+.+...|+.+.+....+. .+| |+. +||-|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~-r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNEN-RLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchH-HHHHHHHHHHHhCCCceEEEccCcccccccccCc-cccee
Confidence 444459999999999655555443 4556655432 223334455667877766655554 444 444 89999
Q ss_pred E----ecc--ccc-----cccc----------ChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 274 H----CSR--CLI-----PWSA----------NDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 274 ~----~~~--~l~-----~~~~----------d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
. |+. +.. -+.. -..++|......+++||+|+.++..+
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 8 443 110 1110 11378888999999999999997666
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.11 Score=47.06 Aligned_cols=91 Identities=18% Similarity=0.164 Sum_probs=60.7
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc----CCCcEEEEeccc-cCCCCCCccceEEeccccc
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER----GVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLI 280 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r----g~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~ 280 (392)
++.|+|.|+|.++...+.. +|++++.+|. ....|.++ |..++..+.++. ...| ...|+|+|-..=-
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk-----~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDT 107 (252)
T COG4076 35 TFADLGAGSGILSVVAAHAAERVIAIEKDPK-----RARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDT 107 (252)
T ss_pred ceeeccCCcchHHHHHHhhhceEEEEecCcH-----HHHHhhhcCCCCCCcceEEEecccccccc--cccceeHHHHhhH
Confidence 7999999999887766654 8999988664 23344443 556677777776 5566 4579999852111
Q ss_pred ccc-cChHHHHHHHHHhccCCeEEEE
Q 036725 281 PWS-ANDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 281 ~~~-~d~~~~L~ei~RvLkPGG~lvl 305 (392)
-.. +....++..+..-||-+|.++=
T Consensus 108 aLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 108 ALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HhhcccccHHHHHHHHHhhcCCcccc
Confidence 111 1224677777778888888765
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.071 Score=43.94 Aligned_cols=38 Identities=26% Similarity=0.603 Sum_probs=27.5
Q ss_pred ccceEEecccccccc---c-Ch--HHHHHHHHHhccCCeEEEEEc
Q 036725 269 AFDMAHCSRCLIPWS---A-ND--GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 269 sFDlV~~~~~l~~~~---~-d~--~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.||+|.|..+. -|. - |. ..+++.+.+.|+|||+|++.-
T Consensus 1 ~yDvilclSVt-kWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 1 QYDVILCLSVT-KWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp -EEEEEEES-H-HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CccEEEEEEee-EEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 48999997554 232 0 22 479999999999999999973
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.1 Score=44.55 Aligned_cols=138 Identities=17% Similarity=0.168 Sum_probs=74.3
Q ss_pred CCCCcceEEEECCcCchHHHHHhhC--------CcEEEeCCccChHHHHHHHHHHc-CCCcEEEEeccc-cC--------
Q 036725 202 DSGMVRTALDTGCGVASWGAYLFKK--------NVITMSFAPRDSHEAQVQFALER-GVPAVIGVLGTI-KL-------- 263 (392)
Q Consensus 202 ~~~~~~~VLDiGCG~G~~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a~~r-g~~~~~~~~~~~-~l-------- 263 (392)
.++. +|||+.+..|+=++.|.+. .+++=|+++.- ..++....++ ..++......+. ..
T Consensus 154 ~p~~--~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R--~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~ 229 (375)
T KOG2198|consen 154 KPGD--KVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKR--LNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDG 229 (375)
T ss_pred CCCC--eeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHH--HHHHHHHHhccCCcceeeecccceeccccccccC
Confidence 3454 8999999999988888774 24444553321 1222222232 222222222221 11
Q ss_pred -CCCCCccceEEec-cc----cc--------c-cccC--------hHHHHHHHHHhccCCeEEEEEcCCCchhhhhhhcc
Q 036725 264 -PYPSRAFDMAHCS-RC----LI--------P-WSAN--------DGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQ 320 (392)
Q Consensus 264 -p~~d~sFDlV~~~-~~----l~--------~-~~~d--------~~~~L~ei~RvLkPGG~lvl~~p~~~~~~~~~~w~ 320 (392)
+.....||-|.|. -| .+ . |... .-.+|..-.|.||+||.++.++...+-
T Consensus 230 ~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp-------- 301 (375)
T KOG2198|consen 230 NDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP-------- 301 (375)
T ss_pred chhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc--------
Confidence 2334579999864 11 10 0 1111 126889999999999999999765532
Q ss_pred cChHhHHHHHHHHHHHHHHcCceecceeccEEE
Q 036725 321 RPIKELEEEQRKIEEIAKLLCWEKKHEKGETAI 353 (392)
Q Consensus 321 ~~~e~l~~~~~~i~~l~~~l~W~~~~~~~~~~i 353 (392)
.+...-....++.....+.|......-.-.+
T Consensus 302 --ieNEaVV~~~L~~~~~~~~lv~~~~~lp~l~ 332 (375)
T KOG2198|consen 302 --IENEAVVQEALQKVGGAVELVDVSGDLPGLK 332 (375)
T ss_pred --hhhHHHHHHHHHHhcCcccceeeccccccce
Confidence 2222223345666656666655555433333
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.26 Score=45.16 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.6
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeC
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSF 233 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~ 233 (392)
.+.|||||-|.+...|+.. -++|+++
T Consensus 63 efaDIGCGyGGLlv~Lsp~fPdtLiLGmEI 92 (249)
T KOG3115|consen 63 EFADIGCGYGGLLMKLAPKFPDTLILGMEI 92 (249)
T ss_pred eEEeeccCccchhhhccccCccceeeeehh
Confidence 6899999999999999987 5777766
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=92.92 E-value=3 Score=39.28 Aligned_cols=91 Identities=19% Similarity=0.222 Sum_probs=49.6
Q ss_pred cceEEEECCcCc-hHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCC---CCccceEEecccc
Q 036725 206 VRTALDTGCGVA-SWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYP---SRAFDMAHCSRCL 279 (392)
Q Consensus 206 ~~~VLDiGCG~G-~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~---d~sFDlV~~~~~l 279 (392)
+++||=+|=..- +++..|... +|+++|++..-+ .-..+.|++.|++ +.....+.+.|+| .++||++++.-
T Consensus 45 gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll-~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~~~~fD~f~TDP-- 120 (243)
T PF01861_consen 45 GKRILFLGDDDLTSLALALTGLPKRITVVDIDERLL-DFINRVAEEEGLP-IEAVHYDLRDPLPEELRGKFDVFFTDP-- 120 (243)
T ss_dssp T-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHH-HHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE----
T ss_pred CCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHH-HHHHHHHHHcCCc-eEEEEecccccCCHHHhcCCCEEEeCC--
Confidence 348999996655 445555433 899999876533 3345577788888 5556666666666 48999999874
Q ss_pred cccccC-hHHHHHHHHHhccCCe
Q 036725 280 IPWSAN-DGMYMMEIDRVLRPGG 301 (392)
Q Consensus 280 ~~~~~d-~~~~L~ei~RvLkPGG 301 (392)
++..+ ...++......||.-|
T Consensus 121 -PyT~~G~~LFlsRgi~~Lk~~g 142 (243)
T PF01861_consen 121 -PYTPEGLKLFLSRGIEALKGEG 142 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT
T ss_pred -CCCHHHHHHHHHHHHHHhCCCC
Confidence 34322 2578888888998766
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.23 Score=49.12 Aligned_cols=89 Identities=21% Similarity=0.172 Sum_probs=58.8
Q ss_pred eEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 208 TALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
+|+=+|+| .|..+..+++. +|+++|. ++...+.|++.|...++.-.+.....--.+.||+|+..-.
T Consensus 169 ~V~I~G~GGlGh~avQ~Aka~ga~Via~~~-----~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~----- 238 (339)
T COG1064 169 WVAVVGAGGLGHMAVQYAKAMGAEVIAITR-----SEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG----- 238 (339)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEeC-----ChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-----
Confidence 67777766 56788888874 7888855 4457778888886544332211111111224999987532
Q ss_pred cChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
...+....+.||+||.+++.+.+
T Consensus 239 ---~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 239 ---PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred ---hhhHHHHHHHHhcCCEEEEECCC
Confidence 34578888999999999998754
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.68 Score=39.99 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=45.6
Q ss_pred cEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCC--CCCCccceEEeccccccccc-----Ch---HHHHHHHHH
Q 036725 228 VITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLP--YPSRAFDMAHCSRCLIPWSA-----ND---GMYMMEIDR 295 (392)
Q Consensus 228 v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp--~~d~sFDlV~~~~~l~~~~~-----d~---~~~L~ei~R 295 (392)
|.+.|+-...+.....+.. +.+. ..+.++.+.. .+. .+++.+|+|+-+....+-.+ .+ -..++.+.+
T Consensus 2 VyaFDIQ~~Ai~~T~~rL~-~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~ 80 (140)
T PF06962_consen 2 VYAFDIQEEAIENTRERLE-EAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE 80 (140)
T ss_dssp EEEEES-HHHHHHHHHHHH-HTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHHHHHHHH-hcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence 6778775544433333222 3333 4566677665 433 33458999998866544331 11 378999999
Q ss_pred hccCCeEEEEEcCC
Q 036725 296 VLRPGGYWVLSGPL 309 (392)
Q Consensus 296 vLkPGG~lvl~~p~ 309 (392)
+|+|||++.++..+
T Consensus 81 lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 81 LLKPGGIITIVVYP 94 (140)
T ss_dssp HEEEEEEEEEEE--
T ss_pred hhccCCEEEEEEeC
Confidence 99999999998643
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.38 Score=46.85 Aligned_cols=93 Identities=16% Similarity=0.215 Sum_probs=46.3
Q ss_pred cHHHHHHHHHhhCCCCCCC---cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEe
Q 036725 187 GADAYIEELASVIPMDSGM---VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVL 258 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~---~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~ 258 (392)
+.-.|+..|.+++...... ..++||||+|....=..|..+ +++|.|+++..+..|+....+..++. .+..+.
T Consensus 81 ~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~ 160 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRK 160 (299)
T ss_dssp HHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE
T ss_pred hhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEE
Confidence 4455777777766543221 347999999987443333322 89999998766666555444442443 333322
Q ss_pred c-cc-c----CCCCCCccceEEecccc
Q 036725 259 G-TI-K----LPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 259 ~-~~-~----lp~~d~sFDlV~~~~~l 279 (392)
. +. . +--+++.||+.+|+--+
T Consensus 161 ~~~~~~i~~~i~~~~e~~dftmCNPPF 187 (299)
T PF05971_consen 161 QKNPDNIFDGIIQPNERFDFTMCNPPF 187 (299)
T ss_dssp --ST-SSTTTSTT--S-EEEEEE----
T ss_pred cCCccccchhhhcccceeeEEecCCcc
Confidence 2 11 1 12234689999998644
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.24 Score=46.14 Aligned_cols=89 Identities=21% Similarity=0.360 Sum_probs=58.1
Q ss_pred cceEEEECCcCchHHHHHhhC-------------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC---------
Q 036725 206 VRTALDTGCGVASWGAYLFKK-------------NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL--------- 263 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~-------------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l--------- 263 (392)
.++++|+....|+|+..|.++ .|++||+-+.. .++.+..+.++..-
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma------------PI~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA------------PIEGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC------------ccCceEEeecccCCHhHHHHHHH
Confidence 458999999999999888764 28888875521 12334445554411
Q ss_pred CCCCCccceEEecccc-----cccccCh-----HHHHHHHHHhccCCeEEEEE
Q 036725 264 PYPSRAFDMAHCSRCL-----IPWSAND-----GMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l-----~~~~~d~-----~~~L~ei~RvLkPGG~lvl~ 306 (392)
-|..+..|+|+|...- |.+.+.. -..|.-..+||||||.|+.-
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK 162 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK 162 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence 2555689999997432 2222111 24566678999999999873
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.23 E-value=0.36 Score=43.70 Aligned_cols=88 Identities=18% Similarity=0.252 Sum_probs=50.7
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC---------CCCCCccce
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL---------PYPSRAFDM 272 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l---------p~~d~sFDl 272 (392)
.+|||+||..|+|+.-..++ .|.++|+-.... -.|.. ++...+... -.|+...|+
T Consensus 71 ~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p---------~~Ga~--~i~~~dvtdp~~~~ki~e~lp~r~Vdv 139 (232)
T KOG4589|consen 71 DTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP---------PEGAT--IIQGNDVTDPETYRKIFEALPNRPVDV 139 (232)
T ss_pred CEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC---------CCCcc--cccccccCCHHHHHHHHHhCCCCcccE
Confidence 38999999999999887776 578888743211 11211 111111111 246788999
Q ss_pred EEecccccccc----cChH-------HHHHHHHHhccCCeEEEEE
Q 036725 273 AHCSRCLIPWS----ANDG-------MYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 273 V~~~~~l~~~~----~d~~-------~~L~ei~RvLkPGG~lvl~ 306 (392)
|++...- .-. .|.. .+|.-....++|+|.|+.-
T Consensus 140 VlSDMap-naTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK 183 (232)
T KOG4589|consen 140 VLSDMAP-NATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK 183 (232)
T ss_pred EEeccCC-CCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE
Confidence 9986321 110 0111 2333344567899999984
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.55 Score=43.92 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=29.6
Q ss_pred CCCCCccceEEeccccc----c-----cc-----cChHHHHHHHHHhccCCeEEEEE
Q 036725 264 PYPSRAFDMAHCSRCLI----P-----WS-----ANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~----~-----~~-----~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.++++++|+|++.--.. . +. +-...++.|+.|+|||||.+++.
T Consensus 15 ~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 15 RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 46789999999872110 0 00 01247889999999999999874
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=91.18 E-value=0.17 Score=44.66 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=34.4
Q ss_pred CCccceEEecccccccc-------cCh---HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 267 SRAFDMAHCSRCLIPWS-------AND---GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~-------~d~---~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.++||.+.|..+++|.. -|+ ...+.++.++|||||.|+++.|--
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 57899999887776542 122 478899999999999999988655
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.98 E-value=1.1 Score=41.44 Aligned_cols=109 Identities=15% Similarity=0.049 Sum_probs=69.3
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPY 265 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~ 265 (392)
..+..+++++. .+. .+.||||-.|++..+|.+. .+++.|+++.-+..+..++.+..-.+.+....++-..++
T Consensus 5 ~RL~~va~~V~--~~~--~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l 80 (226)
T COG2384 5 KRLTTVANLVK--QGA--RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL 80 (226)
T ss_pred HHHHHHHHHHH--cCC--ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc
Confidence 45566666665 333 4999999999999999987 678888888666655444444444455555555554445
Q ss_pred C-CCccceEEecccccccccChHHHHHHHHHhccCCeEEEE
Q 036725 266 P-SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 266 ~-d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl 305 (392)
. +..+|.|+...+--. -...+|.+-.+-|+-==+|++
T Consensus 81 ~~~d~~d~ivIAGMGG~---lI~~ILee~~~~l~~~~rlIL 118 (226)
T COG2384 81 ELEDEIDVIVIAGMGGT---LIREILEEGKEKLKGVERLIL 118 (226)
T ss_pred CccCCcCEEEEeCCcHH---HHHHHHHHhhhhhcCcceEEE
Confidence 4 447999987643210 224566776666653335555
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.30 E-value=0.67 Score=44.73 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=30.5
Q ss_pred CCCCCccceEEeccccc----------ccc-----cChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 PYPSRAFDMAHCSRCLI----------PWS-----ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~----------~~~-----~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+++++||+|+++--.. .+. .-...++.++.|+|||||.+++..
T Consensus 22 ~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 22 KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 35688999999863210 010 011468899999999999999864
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=89.17 E-value=0.61 Score=38.35 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=22.8
Q ss_pred ceEEEECCcCchHHHHHhhCCcEEEeC
Q 036725 207 RTALDTGCGVASWGAYLFKKNVITMSF 233 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~~v~~vd~ 233 (392)
....|||||.|-+.-.|.+.++.|..+
T Consensus 60 ~~FVDlGCGNGLLV~IL~~EGy~G~Gi 86 (112)
T PF07757_consen 60 QGFVDLGCGNGLLVYILNSEGYPGWGI 86 (112)
T ss_pred CceEEccCCchHHHHHHHhCCCCcccc
Confidence 379999999999999998887776655
|
; GO: 0008168 methyltransferase activity |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=88.55 E-value=4.4 Score=35.96 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=56.1
Q ss_pred ECCcCchHHHHHhhC-----CcEEEeCCccCh-------HHHHHHHHHHcCCCcEEEEeccc---cCCCCCCccceEEec
Q 036725 212 TGCGVASWGAYLFKK-----NVITMSFAPRDS-------HEAQVQFALERGVPAVIGVLGTI---KLPYPSRAFDMAHCS 276 (392)
Q Consensus 212 iGCG~G~~~~~L~~~-----~v~~vd~s~~d~-------~~a~~~~a~~rg~~~~~~~~~~~---~lp~~d~sFDlV~~~ 276 (392)
||=|.=+|+..|++. ++++..+...+. ....++..++.|......+-... ......+.||.|+-+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 566666888888876 566766643221 11122222445654444333332 223357899999976
Q ss_pred ccccccc-----c------C-hHHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLIPWS-----A------N-DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~~~~-----~------d-~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+--.... . . ...++..+.++|+++|.+.++.
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl 125 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTL 125 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 4221100 0 0 1368899999999999999975
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.93 E-value=1 Score=42.18 Aligned_cols=107 Identities=16% Similarity=0.215 Sum_probs=58.3
Q ss_pred CeEEecCCCC-CCCccHHHHHHHHHhhCCCCC----CCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHH
Q 036725 173 NVFRFPGGGT-QFPHGADAYIEELASVIPMDS----GMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQV 243 (392)
Q Consensus 173 ~~~~fp~~g~-~f~~~~~~~i~~l~~~l~~~~----~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~ 243 (392)
.+|-+|.+-- .--++...|+..+++++.... +...++||||.|.--.=..+--+ +++|.|+++..++.++.
T Consensus 41 ~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ 120 (292)
T COG3129 41 RYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKA 120 (292)
T ss_pred eEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHH
Confidence 3455665431 112355568888877775433 34457999998865433322222 67777777666666555
Q ss_pred HHHHHcCCCc-EEE-EeccccCCC-----CCCccceEEecccc
Q 036725 244 QFALERGVPA-VIG-VLGTIKLPY-----PSRAFDMAHCSRCL 279 (392)
Q Consensus 244 ~~a~~rg~~~-~~~-~~~~~~lp~-----~d~sFDlV~~~~~l 279 (392)
......++.. +.. ...+.+--| ..+.||++.|+--+
T Consensus 121 ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPF 163 (292)
T COG3129 121 IISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPF 163 (292)
T ss_pred HHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCc
Confidence 4444333322 111 222221112 25789999998654
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.66 E-value=5.6 Score=37.77 Aligned_cols=101 Identities=16% Similarity=0.246 Sum_probs=61.4
Q ss_pred ceEEEECCcCchHHHHHhhC--------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCC---CC-CccceEE
Q 036725 207 RTALDTGCGVASWGAYLFKK--------NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPY---PS-RAFDMAH 274 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~---~d-~sFDlV~ 274 (392)
-+.+|+|.|+-.=++.|.+. .++.+|++..-+.........+..--.+..+.++..+++ +. ++==+++
T Consensus 80 ~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~f 159 (321)
T COG4301 80 CTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFVF 159 (321)
T ss_pred ceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEEE
Confidence 38999999999877777653 577787776444444444444432223444555543321 11 1112223
Q ss_pred ecccccccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 275 CSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 275 ~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+-.+.+++ ..+|.++...|+||-+|++-+
T Consensus 160 lGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 160 LGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred ecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 333444555444 689999999999999999954
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=87.48 E-value=1.3 Score=40.81 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=47.8
Q ss_pred eEEEECCcCchHHHHHhh--------CCcEEEeCCccChHHHHHHHHHHc--CCCcEEEEeccccCC-----C----CCC
Q 036725 208 TALDTGCGVASWGAYLFK--------KNVITMSFAPRDSHEAQVQFALER--GVPAVIGVLGTIKLP-----Y----PSR 268 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~--------~~v~~vd~s~~d~~~a~~~~a~~r--g~~~~~~~~~~~~lp-----~----~d~ 268 (392)
+|+++|.-.|.-+..+++ .+|+++|+........ +.+. -.+.+.++.++...+ . ...
T Consensus 35 ~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~----a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 35 LIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK----AIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp EEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-----GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred eEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH----HHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 899999988866654432 3899999943322221 1121 114556666654221 1 112
Q ss_pred ccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 269 AFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.-.+|+-. ..|..++..+.|+-...++++|+|+++.+
T Consensus 111 ~~vlVilD--s~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 111 HPVLVILD--SSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SSEEEEES--S----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred CceEEEEC--CCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 33455543 23555577788888999999999999964
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=86.44 E-value=3 Score=41.80 Aligned_cols=95 Identities=19% Similarity=0.168 Sum_probs=55.9
Q ss_pred eEEEECCcC-chHHHHHhhC-C---cEEEeCCccChHHHHHHHHHHc-CCCcEEEEecc-c--cC-CC-CCCccceEEec
Q 036725 208 TALDTGCGV-ASWGAYLFKK-N---VITMSFAPRDSHEAQVQFALER-GVPAVIGVLGT-I--KL-PY-PSRAFDMAHCS 276 (392)
Q Consensus 208 ~VLDiGCG~-G~~~~~L~~~-~---v~~vd~s~~d~~~a~~~~a~~r-g~~~~~~~~~~-~--~l-p~-~d~sFDlV~~~ 276 (392)
+||.+|+|. |..+..+++. + +++++. ++...+.+++. +...+...... . .+ .+ ..+.+|+|+..
T Consensus 187 ~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~-----~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 187 TVAVWGCGPVGLFAARSAKLLGAERVIAIDR-----VPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-----CHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 899999987 7787777776 2 555544 34466677766 33111111110 1 01 11 23469999864
Q ss_pred cccc--------------ccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLI--------------PWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~--------------~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
-.-. +-..+....+.++.+.|+++|.+++.+
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 2100 001134567899999999999999875
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=86.42 E-value=6.2 Score=41.24 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=68.0
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--------CcEEEeCCccChHHHHHHHHHHcCCC-c-EEEEe
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--------NVITMSFAPRDSHEAQVQFALERGVP-A-VIGVL 258 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a~~rg~~-~-~~~~~ 258 (392)
.+.++.+++++...... +|+|-.||+|++.....+. .+.|.++......-+...... +|++ . .....
T Consensus 172 ~~v~~liv~~l~~~~~~--~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~l-hgi~~~~~i~~~ 248 (489)
T COG0286 172 REVSELIVELLDPEPRN--SIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLIL-HGIEGDANIRHG 248 (489)
T ss_pred HHHHHHHHHHcCCCCCC--eecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHH-hCCCcccccccc
Confidence 45677778877753443 8999999999876544432 255666544333332222222 3433 2 22222
Q ss_pred ccccCCC-----CCCccceEEecccc--ccccc---------------------C-hHHHHHHHHHhccCCeEEEEEcCC
Q 036725 259 GTIKLPY-----PSRAFDMAHCSRCL--IPWSA---------------------N-DGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 259 ~~~~lp~-----~d~sFDlV~~~~~l--~~~~~---------------------d-~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
++..-|. ..+.||.|+++.-+ ..|.. . ...++..+.+.|+|||...++.|.
T Consensus 249 dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~ 328 (489)
T COG0286 249 DTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD 328 (489)
T ss_pred ccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence 2223332 33679999987322 11111 1 147899999999999977766544
Q ss_pred C
Q 036725 310 I 310 (392)
Q Consensus 310 ~ 310 (392)
.
T Consensus 329 g 329 (489)
T COG0286 329 G 329 (489)
T ss_pred C
Confidence 4
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.35 E-value=4.7 Score=38.27 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=51.5
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc-------CC---CcEEEEecc
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER-------GV---PAVIGVLGT 260 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r-------g~---~~~~~~~~~ 260 (392)
+.|++.+....+..-+|||+=+|.|..+..++.+ .|+.++-++.. .+.++...++ +. ..+..+.++
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~v--aalL~dgL~ra~~~~~~~~~~~~ri~l~~~d 153 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVV--AALLDDGLARGYADAEIGGWLQERLQLIHAS 153 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHH--HHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence 3455556555554348999999999999999988 67888776542 2222222222 11 234444444
Q ss_pred c--cCCCCCCccceEEecccc
Q 036725 261 I--KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 261 ~--~lp~~d~sFDlV~~~~~l 279 (392)
. -|.-...+||+|+..-.+
T Consensus 154 a~~~L~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 154 SLTALTDITPRPQVVYLDPMF 174 (250)
T ss_pred HHHHHhhCCCCCcEEEECCCC
Confidence 3 232223479999987655
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=86.21 E-value=4.3 Score=39.13 Aligned_cols=88 Identities=24% Similarity=0.308 Sum_probs=53.0
Q ss_pred eEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c--C-CCCCCccceEEecccc
Q 036725 208 TALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K--L-PYPSRAFDMAHCSRCL 279 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~--l-p~~d~sFDlV~~~~~l 279 (392)
+||..|+| .|..+..+++. ++++++. ++...+.+++.+...+....... . + ....+.+|+|+....
T Consensus 168 ~vli~g~g~vG~~~~~la~~~G~~V~~~~~-----s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g- 241 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAMGAAVIAVDI-----KEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG- 241 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCEEEEEcC-----CHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCC-
Confidence 77888876 47777777775 4444433 33455566666653332211111 0 0 123567999885321
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 280 IPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 280 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+.++.+.|+++|.++..+
T Consensus 242 ------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 242 ------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEEC
Confidence 1346889999999999999864
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.17 E-value=0.25 Score=47.45 Aligned_cols=38 Identities=11% Similarity=0.285 Sum_probs=25.7
Q ss_pred ccceEEecccccccccChHHH-HHHHHHhccCCeEEEEEc
Q 036725 269 AFDMAHCSRCLIPWSANDGMY-MMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~~~~-L~ei~RvLkPGG~lvl~~ 307 (392)
.||+|.++..+.... ....+ +......++++|.+++.+
T Consensus 196 ~ydlIlsSetiy~~~-~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 196 HYDLILSSETIYSID-SLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred chhhhhhhhhhhCcc-hhhhhHhhhhhhcCCccchhhhhh
Confidence 688888876653322 22333 667778889999998864
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=85.24 E-value=3.8 Score=38.86 Aligned_cols=142 Identities=20% Similarity=0.202 Sum_probs=67.3
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL 263 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l 263 (392)
.++..+.+...++ ...+|+|||||.=-++...... .+++.|++...+.. ...+....+.+....+.+...-
T Consensus 92 Ld~fY~~if~~~~----~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~-l~~~l~~l~~~~~~~v~Dl~~~ 166 (251)
T PF07091_consen 92 LDEFYDEIFGRIP----PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEF-LNAFLAVLGVPHDARVRDLLSD 166 (251)
T ss_dssp HHHHHHHHCCCS-------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHH-HHHHHHHTT-CEEEEEE-TTTS
T ss_pred HHHHHHHHHhcCC----CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHH-HHHHHHhhCCCcceeEeeeecc
Confidence 4555555554443 2349999999999988877665 67888875532221 1122234454444444443322
Q ss_pred CCCCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEcCCCchhhhhhhcccChHhHHHHHHHHHHHHHHcCc
Q 036725 264 PYPSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCW 342 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p~~~~~~~~~~w~~~~e~l~~~~~~i~~l~~~l~W 342 (392)
.+....|+.+..-++ |..+.. .....++...++ .=.++++-|........++ -...+...++..+..-.|
T Consensus 167 -~~~~~~DlaLllK~l-p~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~gR~~g------m~~~y~~~fe~~~~~~~~ 237 (251)
T PF07091_consen 167 -PPKEPADLALLLKTL-PCLERQRRGAGLELLDALR-SPHVVVSFPTRSLGGRNKG------MEQTYSAWFEALAAERGW 237 (251)
T ss_dssp -HTTSEESEEEEET-H-HHHHHHSTTHHHHHHHHSC-ESEEEEEEES-------TT------HHHCHHHHHHHHCCTTCE
T ss_pred -CCCCCcchhhHHHHH-HHHHHHhcchHHHHHHHhC-CCeEEEeccccccccCccc------cccCHHHHHHHhcccCCc
Confidence 346778999876544 332111 112222223332 3355556554433222111 122244567777655555
Q ss_pred e
Q 036725 343 E 343 (392)
Q Consensus 343 ~ 343 (392)
.
T Consensus 238 ~ 238 (251)
T PF07091_consen 238 I 238 (251)
T ss_dssp E
T ss_pred e
Confidence 4
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.11 E-value=5.6 Score=38.99 Aligned_cols=89 Identities=15% Similarity=0.183 Sum_probs=52.3
Q ss_pred ceEEEECCc-CchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEec-cc-cCCCCCCccceEEecccc
Q 036725 207 RTALDTGCG-VASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLG-TI-KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 207 ~~VLDiGCG-~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~-~~-~lp~~d~sFDlV~~~~~l 279 (392)
.+||=+|+| .|.++..+++. .|++++. ++...+.+++.|...++.... +. ++....+.||+|+-.-.
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~-----~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G- 244 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV-----SPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG- 244 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC-----CHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCC-
Confidence 378878875 35566666654 3556654 344667787777543321111 11 11111235899885421
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 280 IPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 280 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+....+.||+||.+++.+
T Consensus 245 ------~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 245 ------HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred ------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1235778889999999999876
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.89 E-value=3.8 Score=38.87 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=28.2
Q ss_pred cceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 270 FDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 270 FDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
||+|+++.+..+-. ..+.++.-+...|-.+|.+++..
T Consensus 163 ~DlilasDvvy~~~-~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 163 FDLILASDVVYEEE-SFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred ccEEEEeeeeecCC-cchhHHHHHHHHHhcCCeEEEEE
Confidence 99999998874433 55778888888888888666654
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.34 E-value=3 Score=43.50 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=70.0
Q ss_pred HHHHHHHhhCCCCCC-CcceEEEECCcCchHHHHHhhC--------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc
Q 036725 190 AYIEELASVIPMDSG-MVRTALDTGCGVASWGAYLFKK--------NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT 260 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~-~~~~VLDiGCG~G~~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~ 260 (392)
+....|.++.+.... ....|+=+|.|-|-+....++. ++++++-.|..+..-+...-..-. ..+.++..+
T Consensus 351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~-~~Vtii~~D 429 (649)
T KOG0822|consen 351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWD-NRVTIISSD 429 (649)
T ss_pred HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhc-CeeEEEecc
Confidence 344555555553322 2346788999999777555432 667777777644332221111112 344555555
Q ss_pred c-cCCCCCCccceEEecccccccccCh--HHHHHHHHHhccCCeEEEEE
Q 036725 261 I-KLPYPSRAFDMAHCSRCLIPWSAND--GMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 261 ~-~lp~~d~sFDlV~~~~~l~~~~~d~--~~~L~ei~RvLkPGG~lvl~ 306 (392)
. .++-|....|++++-. |-.+.++. ...|.-+-+.|||+|+.|=.
T Consensus 430 MR~w~ap~eq~DI~VSEL-LGSFGDNELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 430 MRKWNAPREQADIIVSEL-LGSFGDNELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred ccccCCchhhccchHHHh-hccccCccCCHHHHHHHHhhcCCCceEccc
Confidence 5 6665568899998752 33444333 58999999999999987764
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=84.24 E-value=2.1 Score=43.27 Aligned_cols=95 Identities=15% Similarity=0.156 Sum_probs=57.8
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCc--EEEEeccc-c-CCCCCCccceEEecc
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPA--VIGVLGTI-K-LPYPSRAFDMAHCSR 277 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~--~~~~~~~~-~-lp~~d~sFDlV~~~~ 277 (392)
.++||.=+|+|.=+...+.. .|+.-|+++.. -+...+.+.-+++.. +.....+. . +....+.||+|=..
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a-~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD- 128 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEA-VELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD- 128 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHH-HHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHH-HHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC-
Confidence 38999999999666555543 56666776532 222333444556655 44444444 2 22357889999643
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 278 CLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 278 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++. .+..+|..+.+.+|.||++.++.
T Consensus 129 ---PfG-Sp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 129 ---PFG-SPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ----SS---HHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CCC-CccHhHHHHHHHhhcCCEEEEec
Confidence 555 67789999999999999999974
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=82.64 E-value=3.1 Score=42.74 Aligned_cols=99 Identities=19% Similarity=0.227 Sum_probs=57.2
Q ss_pred ceEEEECCcCc--hHHHHHhhC----CcEEEeCCccChHHHHHHHHH-------HcCCCcEEE-EeccccCCCCC-Cccc
Q 036725 207 RTALDTGCGVA--SWGAYLFKK----NVITMSFAPRDSHEAQVQFAL-------ERGVPAVIG-VLGTIKLPYPS-RAFD 271 (392)
Q Consensus 207 ~~VLDiGCG~G--~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~-------~rg~~~~~~-~~~~~~lp~~d-~sFD 271 (392)
..++|+|.|.| .+++.+..+ .+..||-+ .++..+.. +.|-+.+.- +.-...+|... +.||
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs-----~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yD 276 (491)
T KOG2539|consen 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRS-----RAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYD 276 (491)
T ss_pred HHHHHHHhhcccchhhhhhhcccccceeEeeccc-----hHHHHHHHHhhcChhhcCchhccccchhcccCCCCccccee
Confidence 37888887765 555555554 45666544 33333332 122111111 22334677654 4599
Q ss_pred eEEecccccccccCh--HHHHHH-HHHhccCCeEEEEEcCCC
Q 036725 272 MAHCSRCLIPWSAND--GMYMME-IDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 272 lV~~~~~l~~~~~d~--~~~L~e-i~RvLkPGG~lvl~~p~~ 310 (392)
+|+|++.+++..... ....++ ..+..++||++++..+..
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 999999998765322 234444 445678899999875544
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=82.17 E-value=13 Score=37.42 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=57.5
Q ss_pred eEEEECCcCc----hHHHHHhhC-------CcEEEeC----Ccc---ChHHHHHHHHHHcCCCcEEEEe--ccc-c----
Q 036725 208 TALDTGCGVA----SWGAYLFKK-------NVITMSF----APR---DSHEAQVQFALERGVPAVIGVL--GTI-K---- 262 (392)
Q Consensus 208 ~VLDiGCG~G----~~~~~L~~~-------~v~~vd~----s~~---d~~~a~~~~a~~rg~~~~~~~~--~~~-~---- 262 (392)
.|+|+|.|.| ++...|+.+ +||+++. ... +......++|+..|++-.+... ... .
T Consensus 113 HIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~ 192 (374)
T PF03514_consen 113 HIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPS 192 (374)
T ss_pred EEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHH
Confidence 7999999999 444555554 6888877 222 2333444677777887554432 111 2
Q ss_pred -CCCCCCccceEEecccccccccC------hHHHHHHHHHhccCCeEEEEE
Q 036725 263 -LPYPSRAFDMAHCSRCLIPWSAN------DGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 263 -lp~~d~sFDlV~~~~~l~~~~~d------~~~~L~ei~RvLkPGG~lvl~ 306 (392)
+...++..=+|.|...+++...+ +...+-...|-|+|.-..+..
T Consensus 193 ~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E 243 (374)
T PF03514_consen 193 MLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE 243 (374)
T ss_pred HhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence 22333444444465666665422 334455677789999666664
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=81.33 E-value=6.3 Score=41.41 Aligned_cols=96 Identities=16% Similarity=0.104 Sum_probs=57.0
Q ss_pred cceEEEECCcCc-hHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc---------C---------
Q 036725 206 VRTALDTGCGVA-SWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK---------L--------- 263 (392)
Q Consensus 206 ~~~VLDiGCG~G-~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~---------l--------- 263 (392)
..+|+=+|+|.- ..+...++. .|+++|. +....+.+++.|............ +
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~-----~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~ 239 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDT-----RPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM 239 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeC-----CHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence 348999999964 444445444 5666655 445666777776532211110000 0
Q ss_pred -CCCC--CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 -PYPS--RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 -p~~d--~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+.+ +.+|+|+..- ..+-.+.+..+.+++.+.+||||.++..+
T Consensus 240 ~~~~~~~~gaDVVIeta-g~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 240 ALFAEQAKEVDIIITTA-LIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHhccCCCCEEEECC-CCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 0111 4699999763 32322234445699999999999998865
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=80.65 E-value=11 Score=37.02 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=52.8
Q ss_pred eEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC--CCCCCccceEEecccccc
Q 036725 208 TALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL--PYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 208 ~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l--p~~d~sFDlV~~~~~l~~ 281 (392)
+||=+|+| .|.++..+++. ++++++-+ +.+....+.+++.|...+ ......+ ....+.||+|+-.-.
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~--~~~~~~~~~~~~~Ga~~v--~~~~~~~~~~~~~~~~d~vid~~g--- 247 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLRGFEVYVLNRR--DPPDPKADIVEELGATYV--NSSKTPVAEVKLVGEFDLIIEATG--- 247 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEecC--CCCHHHHHHHHHcCCEEe--cCCccchhhhhhcCCCCEEEECcC---
Confidence 78888876 36666667665 45555432 223456667777775321 1111110 001246898885421
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEc
Q 036725 282 WSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 282 ~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+.+..++|++||.+++.+
T Consensus 248 ----~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 248 ----VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred ----CHHHHHHHHHHccCCcEEEEEe
Confidence 1236788999999999998865
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 3e-07
Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 10/166 (6%)
Query: 184 FPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHE 240
F E + + + +G +D G G + L K+ ++ + F+ +E
Sbjct: 25 FAPIYPIIAENIINRFGITAGTC---IDIGSGPGALSIALAKQSDFSIRALDFSK-HMNE 80
Query: 241 AQVQFALERGVPAVIG-VLGTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLR 298
++ + + I V G + +P D+ SR + + + EI R+L+
Sbjct: 81 IALKNIADANLNDRIQIVQGDVHNIPIEDNYADLI-VSRGSVFFWEDVATAFREIYRILK 139
Query: 299 PGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEK 344
GG + G N I++ + + + E+
Sbjct: 140 SGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVER 185
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 4e-07
Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 31/166 (18%)
Query: 175 FRFPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NV--I 229
+ G D +E+ +++ + SG LD GCG+ L V I
Sbjct: 33 WEDAGADVSVDDATDRLTDEMIALLDVRSGD--RVLDVGCGIGKPAVRLATARDVRVTGI 90
Query: 230 TMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--------KLPYPSRAFDMAHC--SRCL 279
++S QV A R A G+ + LP+ +FD S
Sbjct: 91 SIS-------RPQVNQANARATAA--GLANRVTFSYADAMDLPFEDASFDAVWALESLHH 141
Query: 280 IPWSANDGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKE 325
+P + G + E+ RVLRPGG ++ + ++ +
Sbjct: 142 MP---DRGRALREMARVLRPGGTVAIAD--FVLLAPVEGAKKEAVD 182
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 5e-07
Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 17/132 (12%)
Query: 183 QFPHGADAYIE--ELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPR---- 236
+ G D E L +++P G +D GCG + + + A
Sbjct: 21 RSIEGLDGAAEWPALRAMLPEVGG--LRIVDLGCGFGWFCRWAHEH------GASYVLGL 72
Query: 237 DSHEAQVQFALERGVPAVIG-VLGTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEID 294
D E + A G I + KL P +FD+A S + + + +
Sbjct: 73 DLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA-YSSLALHYVEDVARLFRTVH 131
Query: 295 RVLRPGGYWVLS 306
+ L PGG++V S
Sbjct: 132 QALSPGGHFVFS 143
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 6e-07
Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 11/136 (8%)
Query: 210 LDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIG-VLGTI-KLPY 265
LD GCG L + + + + +Q ERG + + G + LP+
Sbjct: 58 LDVGCGDGYGTYKLSRTGYKAVGVDISE-----VMIQKGKERGEGPDLSFIKGDLSSLPF 112
Query: 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPI-K 324
+ F+ + W+ + EI RVL+ GY ++ + ++ R K
Sbjct: 113 ENEQFEAIMA-INSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGK 171
Query: 325 ELEEEQRKIEEIAKLL 340
++ E +L+
Sbjct: 172 DVVCNTMMPWEFEQLV 187
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 7e-07
Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 9/125 (7%)
Query: 186 HGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEA 241
A+ + L G L+ GCG+ + L K + ++ +P +A
Sbjct: 20 EQAETLEKLLHHDTVYPPGA--KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKA 77
Query: 242 QVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPG 300
+ + + G+ V + I LP+ +FD ++ + + + +VL+PG
Sbjct: 78 R-ENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFV-CFVLEHLQSPEEALKSLKKVLKPG 135
Query: 301 GYWVL 305
G +
Sbjct: 136 GTITV 140
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 9e-07
Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 18/173 (10%)
Query: 177 FPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYL---FKKNVITMSF 233
F Q P +A + ++ + + D GCG +L K + +
Sbjct: 20 FKLLKRQGPGSPEATRKAVSFINELTDDA--KIADIGCGTGGQTLFLADYVKGQITGI-- 75
Query: 234 APRDSHEAQVQFALER----GVPA-VIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSANDG 287
D ++ E V G+ G++ LP+ + D+ + ++
Sbjct: 76 ---DLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAI--YNIGFE 130
Query: 288 MYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLL 340
M E + L+ GG+ +S + + E I +
Sbjct: 131 RGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPEISVIPTCIDKM 183
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 1e-06
Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 11/131 (8%)
Query: 210 LDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265
LD G G +F + + + +A+ F+ E I G I KLP+
Sbjct: 28 LDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAE-NFSRENNFKLNI-SKGDIRKLPF 85
Query: 266 PSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIK 324
+ + + ND + EI RVL+PGG ++ T + + + K
Sbjct: 86 KDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACIN----FLTTKDERYNKGEK 141
Query: 325 ELEEEQRKIEE 335
E E ++E
Sbjct: 142 IGEGEFLQLER 152
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 2e-06
Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 16/145 (11%)
Query: 185 PHGADAYIE--ELASVIPMDSGMVRTALDTGCGVASWGAYLFK---KNVITMSFAPRDSH 239
G A E EL ++P + +T LD GCG Y + K V+ + D
Sbjct: 24 KEGLKAAGEWHELKKMLPDFNQ--KTVLDLGCGFGWHCIYAAEHGAKKVLGI-----DLS 76
Query: 240 EAQVQFALERGVPAVIG-VLGTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVL 297
E + A + V+ I + A+++ S + + A+ ++ L
Sbjct: 77 ERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV-LSSLALHYIASFDDICKKVYINL 135
Query: 298 RPGGYWVLSGPL-INWRTNYQAWQR 321
+ G ++ S + Q W
Sbjct: 136 KSSGSFIFSVEHPVFTADGRQDWYT 160
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 3e-06
Identities = 30/173 (17%), Positives = 62/173 (35%), Gaps = 18/173 (10%)
Query: 177 FPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYL---FKKNVITMSF 233
F Q P + ++ L+ + + D GCG L V + F
Sbjct: 20 FSNMERQGPGSPEVTLKALSFIDNLTEKS--LIADIGCGTGGQTMVLAGHVTGQVTGLDF 77
Query: 234 APRDSHEAQVQFALERGVPAVI-GVLGTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMM 291
+ A + G+ + G++G++ LP+ + D+ + ++ +
Sbjct: 78 LSGFIDIFN-RNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAI--YNIGFERGLN 134
Query: 292 EIDRVLRPGGYWVLSGPLINWRTN------YQAWQRPIKELEEEQRKIEEIAK 338
E + L+ GGY +S +W T+ W E++ ++ +I K
Sbjct: 135 EWRKYLKKGGYLAVSE--CSWFTDERPAEINDFWMDAYPEIDTIPNQVAKIHK 185
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-06
Identities = 26/165 (15%), Positives = 49/165 (29%), Gaps = 28/165 (16%)
Query: 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPR-------DSHEAQVQF 245
EE I +D GCG G Y D + ++
Sbjct: 7 EEYLPNIFEGKKG--VIVDYGCGN---GFY-------CKYLLEFATKLYCIDINVIALKE 54
Query: 246 ALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVL 305
E+ +VI + P + D + + + E+ R+L+ G +
Sbjct: 55 VKEK-FDSVITLSD--PKEIPDNSVDFILFANSF-HDMDDKQHVISEVKRILKDDGRVI- 109
Query: 306 SGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGE 350
+I+WR P+ +E+ + + EK+
Sbjct: 110 ---IIDWRKENTGIGPPLSIRMDEKDYMGWFSN-FVVEKRFNPTP 150
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 5e-06
Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 23/170 (13%)
Query: 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQF 245
A I + V+P+ L G + +++ V + +APR E
Sbjct: 61 AAIIKGLKVMPIKRDS--KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL--- 115
Query: 246 ALERGVPAVIGVLGTIKLPYPSRAF-DMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWV 304
+I +LG P + + + + L+ GGY +
Sbjct: 116 DACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGM 175
Query: 305 LSGPLINWRTNYQAWQRP--------IKELEEEQRKIEEIAKLLCWEKKH 346
++ + + + LE KI + + +EK H
Sbjct: 176 IA-----IKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEPFEKDH 220
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 5e-06
Identities = 24/161 (14%), Positives = 45/161 (27%), Gaps = 26/161 (16%)
Query: 188 ADAYIEELASVI---PMDSGMVR--------TALDTGCGVASWGAYLFKKNVITMSFAPR 236
L +VI D ++ LD G G W +L
Sbjct: 13 TFDAEALLGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGHQIEGL--- 69
Query: 237 DSHEAQVQFALER--GVPAVIGVLGTIKLPYPSRAFDMAHCSRCLI--PWSANDGMYMME 292
+ V+ A + V G + L + + LI ++
Sbjct: 70 EPATRLVELARQTHPSVTFHHGTITD--LSDSPKRWAGLLAWYSLIHMGPGELPDA-LVA 126
Query: 293 IDRVLRPGGYWVLS-----GPLINWRTNYQAWQRPIKELEE 328
+ + GG ++S + A++ P+ EL +
Sbjct: 127 LRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQ 167
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 6e-06
Identities = 31/175 (17%), Positives = 61/175 (34%), Gaps = 26/175 (14%)
Query: 179 GGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWG------AYLFKKNV--IT 230
G G +A +++ S I ++ LD G G G + + I
Sbjct: 32 GENYISSGGLEA-TKKILSDIELNENS--KVLDIGSG---LGGGCMYINEKYGAHTHGID 85
Query: 231 MSFAPRDSHEAQVQFALER--GVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSAND- 286
+ V A ER G +I I +P FD+ + ++ S +
Sbjct: 86 IC-------SNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENK 138
Query: 287 GMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAW-QRPIKELEEEQRKIEEIAKLL 340
+ + L+P G +++ + N+ + +K+ + +EE A +L
Sbjct: 139 NKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADIL 193
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 8e-06
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 210 LDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYP 266
LD GCG G YL K+ +V+ D + +A + P V+G +
Sbjct: 51 LDAGCGQGRIGGYLSKQGHDVLGT-----DLDPILIDYAKQD-FPEARWVVGDLSVDQIS 104
Query: 267 SRAFDMAHCSRCLIPWSANDGMYMM--EIDRVLRPGGYWVLS 306
FD+ + ++ + A DG I R L G V+
Sbjct: 105 ETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIG 146
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 31/173 (17%), Positives = 52/173 (30%), Gaps = 33/173 (19%)
Query: 186 HGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSH------ 239
H + + + LD G G ++F+P
Sbjct: 4 HHHHHSLGLMIKTAECRAEH--RVLDIGAGAG----------HTALAFSPYVQECIGVDA 51
Query: 240 -----EAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEI 293
E FA E+GV V GT LP+P +FD+ C R ++ + E+
Sbjct: 52 TKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITC-RYAAHHFSDVRKAVREV 110
Query: 294 DRVLRPGG------YWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLL 340
RVL+ G ++ P+ R + + E +
Sbjct: 111 ARVLKQDGRFLLVDHYAPEDPV--LDEFVNHLNRLRDPSHVRESSLSEWQAMF 161
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 1e-05
Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 14/166 (8%)
Query: 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQ 244
A + + +P+ G L G + +++ + + FAPR +
Sbjct: 64 AALLKGLIELPVKEGD--RILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL-- 119
Query: 245 FALERGVPAVIGVLGTIKLPYPSR-AFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYW 303
+ R + +LG + P R + + + + LR GGY
Sbjct: 120 -TVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYM 178
Query: 304 VLS--GPLINWRTNYQA-WQRPIKELEEEQRKIEEIAKLLCWEKKH 346
+++ I+ T ++R IK L + +I+++ L +++ H
Sbjct: 179 LMAIKARSIDVTTEPSEVYKREIKTLMDGGLEIKDVVHLDPFDRDH 224
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 1e-05
Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 9/134 (6%)
Query: 176 RFPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSF 233
RF + + ++ +A+ IP L G +L V +
Sbjct: 5 RFSQSEYVYGTEPNDFLVSVANQIP-----QGKILCLAEGEGRNACFLASLGYEVTAVDQ 59
Query: 234 APRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEI 293
+ +A+ Q A E+GV + A++ C +P + ++
Sbjct: 60 SSVGLAKAK-QLAQEKGVKITTVQSNLADFDIVADAWEGIVSIFCHLPS-SLRQQLYPKV 117
Query: 294 DRVLRPGGYWVLSG 307
+ L+PGG ++L G
Sbjct: 118 YQGLKPGGVFILEG 131
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 1e-05
Identities = 34/184 (18%), Positives = 62/184 (33%), Gaps = 25/184 (13%)
Query: 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFA 246
+ IE L ++ LD CGV + L V+ + D E ++ A
Sbjct: 22 RSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGV-----DISEDMIRKA 76
Query: 247 LERGV---PAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGG 301
E V ++G KL + + FD ++ + + E+ RVL+P G
Sbjct: 77 REYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSG 136
Query: 302 ---------YWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGETA 352
+L + + W + +EE+ + E E+ +
Sbjct: 137 KFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKS----EQDSFRVRFN 192
Query: 353 IWQK 356
+W K
Sbjct: 193 VWGK 196
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 1e-05
Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 16/150 (10%)
Query: 161 EKAVQNWIQYEGNVFRFPGGGTQFPHGADAYIEELASVIPMDSGMV-RTALDTGCGVASW 219
KA++ W V GG H D IE + I G ALD G G+
Sbjct: 51 GKALEYWRTVPATVSGVLGG---MDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRI 107
Query: 220 GAYLFKK---NVITMSFAPRDSHEAQVQFALER--GVPAVIGVLGTI-KLPYPSRAFDMA 273
L K + + + ++ A G+P +L ++ P +D+
Sbjct: 108 TKNLLTKLYATTDLL-----EPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLI 162
Query: 274 HCSRCLIPWSANDGM-YMMEIDRVLRPGGY 302
I + D + + + L P GY
Sbjct: 163 VIQWTAIYLTDADFVKFFKHCQQALTPNGY 192
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-05
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 30/136 (22%)
Query: 185 PHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPR-------D 237
P + L+ ++ L+ GCG G F P+ D
Sbjct: 32 PDPELTFDLWLSRLLTPQ----TRVLEAGCGH---GPD-------AARFGPQAARWAAYD 77
Query: 238 SHEAQVQFALERGVPAVIGVLGTI-KLPYPSRA-FDMAHCSRCLIPWSANDGMYMMEIDR 295
++ A A + +LP A F + R P S ++ +
Sbjct: 78 FSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR--GPTSV-----ILRLPE 130
Query: 296 VLRPGGYWVLSGPLIN 311
+ P +++ GP +N
Sbjct: 131 LAAPDAHFLYVGPRLN 146
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 30/161 (18%)
Query: 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSH-------EAQVQ 244
+ + +++ + G D G G G Y +++ A + Q
Sbjct: 23 VNAIINLLNLPKG--SVIADIGAGT---GGY-------SVALANQGLFVYAVEPSIVMRQ 70
Query: 245 FALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGG-- 301
A+ P V G L P ++ D + ++ E+ R++R G
Sbjct: 71 QAVVH--PQVEWFTGYAENLALPDKSVDGVISILAI-HHFSHLEKSFQEMQRIIRDGTIV 127
Query: 302 --YWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLL 340
+ + W +Y + E ++E LL
Sbjct: 128 LLTFDIRLAQRIWLYDY---FPFLWEDALRFLPLDEQINLL 165
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-05
Identities = 29/125 (23%), Positives = 47/125 (37%), Gaps = 12/125 (9%)
Query: 184 FPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQV 243
F AY+ EL +V + ++ G G + L K + S E
Sbjct: 28 FLVHRFAYLSELQAVKCLLPEG--RGVEIGVGTGRFAVPLKIKIGVEPS-------ERMA 78
Query: 244 QFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYW 303
+ A +RGV + G LP +FD A I + + + E R+L+ GGY
Sbjct: 79 EIARKRGVFVLKGTAE--NLPLKDESFDFA-LMVTTICFVDDPERALKEAYRILKKGGYL 135
Query: 304 VLSGP 308
++
Sbjct: 136 IVGIV 140
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 23/181 (12%), Positives = 57/181 (31%), Gaps = 34/181 (18%)
Query: 189 DAYIEELAS-VIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQV---- 243
D Y+ L + V + + +D GCG + + P ++
Sbjct: 7 DDYVSFLVNTVWKITKPV--HIVDYGCGYGY----------LGLVLMPLLPEGSKYTGID 54
Query: 244 ----------QFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMME 292
+ + G ++ + +D+A C + + +
Sbjct: 55 SGETLLAEARELFRLLPYD-SEFLEGDATEIELNDK-YDIAIC-HAFLLHMTTPETMLQK 111
Query: 293 IDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGETA 352
+ ++ GG + P +W +N ++ E + E ++ + KL + + +
Sbjct: 112 MIHSVKKGGKIICFEP--HWISNMASYLLD-GEKQSEFIQLGVLQKLFESDTQRNGKDGN 168
Query: 353 I 353
I
Sbjct: 169 I 169
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 25/163 (15%), Positives = 50/163 (30%), Gaps = 32/163 (19%)
Query: 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQV-------- 243
E++ + GM T LD G G + + + +V
Sbjct: 26 PEKVLKEFGLKEGM--TVLDVGTG----AGFY------LPYLSKMVGEKGKVYAIDVQEE 73
Query: 244 ------QFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRV 296
+ + G+ V + K+P P D + + ++ E+ RV
Sbjct: 74 MVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMA-FTFHELSEPLKFLEELKRV 132
Query: 297 LRPGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKL 339
+P Y +I+W+ + P +E+ E +
Sbjct: 133 AKPFAYLA----IIDWKKEERDKGPPPEEVYSEWEVGLILEDA 171
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 3e-05
Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 14/166 (8%)
Query: 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQ 244
A I I + G L G + +++ V + F+ R + +
Sbjct: 64 AAILGGVDQIHIKPGA--KVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDL-IN 120
Query: 245 FALERGVPAVIGVLGTIKLPYPSRAF-DMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYW 303
A +R +I V+ + P+ R M + + + LR GG++
Sbjct: 121 LAKKR--TNIIPVIEDARHPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHF 178
Query: 304 VLS--GPLINW-RTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKH 346
V+S I+ + + +K++++E K +E L +E+ H
Sbjct: 179 VISIKANCIDSTASAEAVFASEVKKMQQENMKPQEQLTLEPYERDH 224
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 5e-05
Identities = 34/219 (15%), Positives = 66/219 (30%), Gaps = 40/219 (18%)
Query: 126 HCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGGGTQFP 185
H A +GY R P +A + + +A + Y+
Sbjct: 25 HQFDMAKEGYVNLLPVQHKRSRDPGDSA--EMMQARRAFLDAGHYQ-------------- 68
Query: 186 HGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEA 241
DA + +L + + V LD GCG + + +
Sbjct: 69 PLRDAIVAQLRERLDDKATAV---LDIGCGEGYYTHAFADALPEITTFGLDVSK-----V 120
Query: 242 QVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPG 300
++ A +R P V + + +LP+ + D E+ RV++PG
Sbjct: 121 AIKAAAKRY-PQVTFCVASSHRLPFSDTSMDAIIRIYAPCKAE--------ELARVVKPG 171
Query: 301 GYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKL 339
G+ + + P + E+ E++
Sbjct: 172 GWVITATPGPRHL--MELKGLIYNEVHLHAPHAEQLEGF 208
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 5e-05
Identities = 26/182 (14%), Positives = 49/182 (26%), Gaps = 11/182 (6%)
Query: 161 EKAVQNWIQYEGNVFRFPGGGTQFP----HGADAYIEELASVIPMDSGMVRTALDTGCGV 216
KA W Q V GG + + +++ P +G LD G G+
Sbjct: 32 SKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCA-LDCGAGI 90
Query: 217 ASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDM 272
L V + +A+ E G + ++D+
Sbjct: 91 GRITKRLLLPLFREVDMVDITEDFLVQAKTYLG-EEGKRVRNYFCCGLQDFTPEPDSYDV 149
Query: 273 AHCSRCLIPWSANDGM-YMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEEEQR 331
+ + ++ LRP G V+ + + + R
Sbjct: 150 IWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVR 209
Query: 332 KI 333
+I
Sbjct: 210 RI 211
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 7e-05
Identities = 25/129 (19%), Positives = 40/129 (31%), Gaps = 27/129 (20%)
Query: 186 HGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSH------ 239
H + + +L + + LD G + +FAP
Sbjct: 20 HAKGSDLAKLMQIAALKGNE--EVLDVATGGG----------HVANAFAPFVKKVVAFDL 67
Query: 240 ------EAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMME 292
A+ F G V V G ++P+ F + C R N ++ E
Sbjct: 68 TEDILKVAR-AFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTC-RIAAHHFPNPASFVSE 125
Query: 293 IDRVLRPGG 301
RVL+ GG
Sbjct: 126 AYRVLKKGG 134
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 8e-05
Identities = 31/139 (22%), Positives = 49/139 (35%), Gaps = 12/139 (8%)
Query: 207 RTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265
+ L+ G G W L + + + A + R P V LP+
Sbjct: 38 ESLLEVGAGTGYWLRRLPYPQKVGVEPSE-----AMLAVGRRRA-PEATWVRAWGEALPF 91
Query: 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS--GPLINWRTNYQAWQRPI 323
P +FD+ L + + ++E RVLRPGG V+ L W Y+
Sbjct: 92 PGESFDVVLLFTTL-EFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKG 150
Query: 324 KELEEEQR--KIEEIAKLL 340
+ R E++ LL
Sbjct: 151 VLPWAQARFLAREDLKALL 169
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 1e-04
Identities = 27/178 (15%), Positives = 41/178 (23%), Gaps = 35/178 (19%)
Query: 184 FPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPR------- 236
+ + I LD GCG L A R
Sbjct: 33 IESRRQVTDQAILLAILGRQP--ERVLDLGCGEGWLLRAL----------ADRGIEAVGV 80
Query: 237 DSHEAQVQFALERGVPAVIGVL---GTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEI 293
D V A G V + +D+ + L+ + + +
Sbjct: 81 DGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALLH--QDIIELLSAM 138
Query: 294 DRVLRPGGYWVLS--GPLINWRTNYQAWQRPIKELEEEQ---------RKIEEIAKLL 340
+L PGG V+ P +YQ R R + L
Sbjct: 139 RTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNAL 196
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 1e-04
Identities = 22/132 (16%), Positives = 35/132 (26%), Gaps = 23/132 (17%)
Query: 185 PHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSH----- 239
P A +AS + G L+ G G I + R
Sbjct: 20 PEVAGQIATAMASAV-HPKGEEPVFLELGVGTG----------RIALPLIARGYRYIALD 68
Query: 240 --EAQVQFA---LERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEI 293
A ++ + V V +P P + + + E
Sbjct: 69 ADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW-HLVPDWPKVLAEA 127
Query: 294 DRVLRPGGYWVL 305
RVL+PGG +
Sbjct: 128 IRVLKPGGALLE 139
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 2e-04
Identities = 26/177 (14%), Positives = 53/177 (29%), Gaps = 23/177 (12%)
Query: 181 GTQFPHGAD-AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFA 234
TQ D +YI + P L+ G G + +Y+ + +
Sbjct: 90 NTQIISEIDASYIIMRCGLRPGM-----DILEVGVGSGNMSSYILYALNGKGTLTVVERD 144
Query: 235 PRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEID 294
+ +A + + V I + +D PW+ + +I
Sbjct: 145 EDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIA-DIPDPWNH-----VQKIA 198
Query: 295 RVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGET 351
+++PG P N+ ++ + L E +L+ +G T
Sbjct: 199 SMMKPGSVATFYLP------NFDQSEKTVLSLSASGMHHLETVELMKRRILVREGAT 249
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 25/131 (19%)
Query: 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NV--ITMSFAPRDSHEAQV 243
+ ELA + LD G G +L +K ++ + ++ Q
Sbjct: 68 EWLASELAMTGVLQRQA--KGLDLGAGYGGAARFLVRKFGVSIDCLNIA-------PVQN 118
Query: 244 QFALERGVPAVIGVLGTI--------KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDR 295
+ E A G+ I ++P ++D S+ S + E R
Sbjct: 119 KRNEEYNNQA--GLADNITVKYGSFLEIPCEDNSYDFI-WSQDAFLHSPDKLKVFQECAR 175
Query: 296 VLRPGGYWVLS 306
VL+P G ++
Sbjct: 176 VLKPRGVMAIT 186
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* 3pla_E* Length = 232 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 3e-04
Identities = 23/166 (13%), Positives = 55/166 (33%), Gaps = 14/166 (8%)
Query: 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQ 244
I + P+ G L G + +++ + F+PR E
Sbjct: 63 GAILKGLKTNPIRKGT--KVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVREL--- 117
Query: 245 FALERGVPAVIGVLGTIKLPYPSRAF-DMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYW 303
+ + P + +L + P ++ + I + + L+ G
Sbjct: 118 LLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDM 177
Query: 304 VLS--GPLINW-RTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKH 346
+L I+ + + ++ +++LE + +I L ++K H
Sbjct: 178 LLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDH 223
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 4e-04
Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 8/101 (7%)
Query: 208 TALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKLPYP 266
L+ GCG + + D A R G P + +
Sbjct: 46 KILELGCGAGYQAEAMLAAGFDVDAT---DGSPELAAEASRRLGRPVRTMLFHQLDAI-- 100
Query: 267 SRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLS 306
A+D CL+ ++ + I R L+PGG + S
Sbjct: 101 -DAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYAS 140
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 392 | |||
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.59 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.57 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.55 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.54 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.53 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.53 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.53 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.52 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.52 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.52 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.51 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.5 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.49 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.49 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.48 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.48 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.48 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.47 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.47 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.46 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.46 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.46 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.46 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.46 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.46 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.46 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.45 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.45 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.45 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.44 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.44 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.43 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.43 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.43 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.43 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.43 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.43 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.42 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.42 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.42 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.41 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.41 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.41 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.4 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.4 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.4 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.4 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.4 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.39 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.39 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.38 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.38 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.38 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.38 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.38 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.38 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.37 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.37 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.36 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.36 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.36 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.36 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.35 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.35 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.34 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.34 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.34 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.33 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.33 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.32 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.32 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.32 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.32 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.32 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.32 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.31 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.31 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.31 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.3 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.3 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.3 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.3 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.3 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.3 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.3 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.3 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.29 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.29 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.29 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.28 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.28 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.27 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.27 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.27 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.25 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.25 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.25 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.24 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.24 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.24 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.23 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.22 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.22 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.21 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.21 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.21 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.21 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.2 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.2 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.2 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.2 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.2 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.19 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.19 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.19 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.19 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.18 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.18 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.18 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.18 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.18 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.18 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.17 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.17 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.17 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.17 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.17 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.17 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.17 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.16 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.16 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.16 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.15 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.15 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.15 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.15 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.15 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.14 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.14 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.14 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.14 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.14 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.13 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.13 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.12 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.12 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.12 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.11 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.1 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.1 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.1 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.1 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.09 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.09 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.09 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.08 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.08 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.08 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.08 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.07 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.07 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.07 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.07 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.06 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.06 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.06 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.05 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.04 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.04 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.03 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.03 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.03 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.02 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.02 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.01 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.01 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.01 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.01 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.0 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.99 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.99 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.98 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 98.97 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.97 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.97 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.96 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.96 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.96 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.95 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.94 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.94 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.93 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.93 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.93 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.92 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.92 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.91 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.9 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.9 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.89 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.89 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.89 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.88 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 98.87 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.87 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.86 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.83 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.82 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 98.81 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 98.81 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.81 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.81 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.8 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.79 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.79 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.78 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 98.78 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.77 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.77 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.76 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.76 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.76 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.75 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.75 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.75 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.74 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.73 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.71 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.7 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.68 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.67 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.66 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.66 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.65 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.64 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.63 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.63 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.63 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.63 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.62 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.61 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.59 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.59 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.59 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.58 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.58 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.57 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.57 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.56 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.51 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.49 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.46 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.46 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.41 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.38 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.29 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.28 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.27 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.18 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.16 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.15 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.14 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.13 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.12 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.1 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.06 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.05 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.0 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.87 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 97.86 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.86 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.81 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.79 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.79 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.78 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.76 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.73 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 97.71 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.7 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.7 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 97.62 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.53 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.53 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.5 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.46 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.45 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.44 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.38 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.32 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.29 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.18 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.17 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 96.97 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 96.87 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.63 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 95.49 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 95.41 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 94.65 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 91.12 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 90.77 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 90.52 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 90.06 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 89.91 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 89.17 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 87.96 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 87.95 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 86.88 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 86.81 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 86.23 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 86.06 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 85.99 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 85.28 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 85.12 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 84.82 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 84.75 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 84.72 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 83.78 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 83.69 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 83.42 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 83.35 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 82.75 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 82.08 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 81.98 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 81.52 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 81.37 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 80.6 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 80.53 |
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.1e-15 Score=138.43 Aligned_cols=112 Identities=20% Similarity=0.326 Sum_probs=88.3
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSR 268 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~ 268 (392)
++.+++.+....+. +|||||||+|.++..|+++ .++++|+++.++..+.. .+.+.+.+++.++.++. .+|++++
T Consensus 26 ~~~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~v~~~~~d~~~l~~~~~ 102 (260)
T 1vl5_A 26 LAKLMQIAALKGNE--EVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARA-FIEGNGHQQVEYVQGDAEQMPFTDE 102 (260)
T ss_dssp HHHHHHHHTCCSCC--EEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHHHhCCCCCC--EEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHhcCCCceEEEEecHHhCCCCCC
Confidence 34455555544443 8999999999999999987 78999888765555433 34455666666666666 8899999
Q ss_pred ccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 269 AFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+||+|++..+++++. ++..+|.++.|+|||||+|++..
T Consensus 103 ~fD~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~~~~ 140 (260)
T 1vl5_A 103 RFHIVTCRIAAHHFP-NPASFVSEAYRVLKKGGQLLLVD 140 (260)
T ss_dssp CEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEEEEhhhhHhcC-CHHHHHHHHHHHcCCCCEEEEEE
Confidence 999999999997776 88999999999999999999964
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.57 E-value=4.1e-15 Score=140.28 Aligned_cols=107 Identities=26% Similarity=0.369 Sum_probs=84.6
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
..+++.|.+..+. + .+|||||||+|.++..|+++ +|+++|+++ .|++.|++. +++.++.++. .+|+
T Consensus 27 ~~l~~~l~~~~~~--~--~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~-----~ml~~a~~~--~~v~~~~~~~e~~~~ 95 (257)
T 4hg2_A 27 RALFRWLGEVAPA--R--GDALDCGCGSGQASLGLAEFFERVHAVDPGE-----AQIRQALRH--PRVTYAVAPAEDTGL 95 (257)
T ss_dssp HHHHHHHHHHSSC--S--SEEEEESCTTTTTHHHHHTTCSEEEEEESCH-----HHHHTCCCC--TTEEEEECCTTCCCC
T ss_pred HHHHHHHHHhcCC--C--CCEEEEcCCCCHHHHHHHHhCCEEEEEeCcH-----Hhhhhhhhc--CCceeehhhhhhhcc
Confidence 4566777776652 2 28999999999999999987 788887765 455555432 4566666665 8999
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++++||+|++..++ ||. +...++.|+.|+|||||+|++...
T Consensus 96 ~~~sfD~v~~~~~~-h~~-~~~~~~~e~~rvLkpgG~l~~~~~ 136 (257)
T 4hg2_A 96 PPASVDVAIAAQAM-HWF-DLDRFWAELRRVARPGAVFAAVTY 136 (257)
T ss_dssp CSSCEEEEEECSCC-TTC-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCcccEEEEeeeh-hHh-hHHHHHHHHHHHcCCCCEEEEEEC
Confidence 99999999999888 676 688999999999999999998754
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-14 Score=135.42 Aligned_cols=119 Identities=25% Similarity=0.405 Sum_probs=92.2
Q ss_pred ccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc
Q 036725 186 HGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI 261 (392)
Q Consensus 186 ~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~ 261 (392)
......++.+++.++...+. +|||||||+|.++..++++ .++++|+++..+..+.. .+...+++ .+.++.++.
T Consensus 44 ~~~~~~~~~l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~ 120 (273)
T 3bus_A 44 DATDRLTDEMIALLDVRSGD--RVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANA-RATAAGLANRVTFSYADA 120 (273)
T ss_dssp HHHHHHHHHHHHHSCCCTTC--EEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCT
T ss_pred HHHHHHHHHHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHH-HHHhcCCCcceEEEECcc
Confidence 34455677888888755554 8999999999999999874 78999887765544333 33344543 456666665
Q ss_pred -cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 262 -KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 262 -~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.+|+++++||+|++..+++|+. +...+|+++.|+|||||++++..+
T Consensus 121 ~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~i~~~ 167 (273)
T 3bus_A 121 MDLPFEDASFDAVWALESLHHMP-DRGRALREMARVLRPGGTVAIADF 167 (273)
T ss_dssp TSCCSCTTCEEEEEEESCTTTSS-CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ccCCCCCCCccEEEEechhhhCC-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 8899999999999999997775 889999999999999999999763
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=136.67 Aligned_cols=118 Identities=19% Similarity=0.354 Sum_probs=90.9
Q ss_pred cHHHHHHHHHhhC----CCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEe
Q 036725 187 GADAYIEELASVI----PMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVL 258 (392)
Q Consensus 187 ~~~~~i~~l~~~l----~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~ 258 (392)
.....++.+++.+ ....+. +|||||||+|.++..|+++ .++++|+++.++..+.. .+...++ +.+.++.
T Consensus 62 ~~~~~~~~l~~~l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~~~~ 138 (297)
T 2o57_A 62 ASLRTDEWLASELAMTGVLQRQA--KGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEE-YNNQAGLADNITVKY 138 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHHHTCTTTEEEEE
T ss_pred HHHHHHHHHHHHhhhccCCCCCC--EEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHhcCCCcceEEEE
Confidence 3445667777776 443443 8999999999999999875 78899887765554443 2333444 4566666
Q ss_pred ccc-cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 259 GTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 259 ~~~-~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++. .+|+++++||+|++..+++|+. +...+|+++.|+|||||++++..+
T Consensus 139 ~d~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 188 (297)
T 2o57_A 139 GSFLEIPCEDNSYDFIWSQDAFLHSP-DKLKVFQECARVLKPRGVMAITDP 188 (297)
T ss_dssp CCTTSCSSCTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCcccCCCCCCCEeEEEecchhhhcC-CHHHHHHHHHHHcCCCeEEEEEEe
Confidence 665 8899999999999999998887 789999999999999999999864
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-14 Score=132.24 Aligned_cols=115 Identities=19% Similarity=0.192 Sum_probs=90.8
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~l 263 (392)
...++.+++.+...++. +|||||||+|.++..+++. .++++|+++.++..+.. .+.+.++. ++.++.++. .+
T Consensus 22 ~~~~~~l~~~~~~~~~~--~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~~v~~~~~d~~~~ 98 (256)
T 1nkv_A 22 EEKYATLGRVLRMKPGT--RILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKR-RAEELGVSERVHFIHNDAAGY 98 (256)
T ss_dssp HHHHHHHHHHTCCCTTC--EEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEESCCTTC
T ss_pred HHHHHHHHHhcCCCCCC--EEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHH-HHHhcCCCcceEEEECChHhC
Confidence 56777788887755554 8999999999999999875 78999988766555443 34445553 566666665 77
Q ss_pred CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 264 PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++ +++||+|++..+++++. +...+|+++.|+|||||++++..+
T Consensus 99 ~~-~~~fD~V~~~~~~~~~~-~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 99 VA-NEKCDVAACVGATWIAG-GFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp CC-SSCEEEEEEESCGGGTS-SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred Cc-CCCCCEEEECCChHhcC-CHHHHHHHHHHHcCCCeEEEEecC
Confidence 77 88999999998887776 889999999999999999999764
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.5e-14 Score=130.68 Aligned_cols=113 Identities=24% Similarity=0.333 Sum_probs=88.4
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSR 268 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~ 268 (392)
...+++.+....+. +|||||||+|.++..+++. .++++|+++.++..+.. .+.+.+++++.++.++. .+|++++
T Consensus 10 ~~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~~~~~ 86 (239)
T 1xxl_A 10 LGLMIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASS-FAQEKGVENVRFQQGTAESLPFPDD 86 (239)
T ss_dssp HHHHHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHH-HHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred cchHHHHhCcCCCC--EEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHH-HHHHcCCCCeEEEecccccCCCCCC
Confidence 34444555544444 8999999999999999887 78999988765554433 34445666666666665 8899999
Q ss_pred ccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 269 AFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+||+|++..+++|+. +...+|.++.|+|||||++++..+
T Consensus 87 ~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~ 125 (239)
T 1xxl_A 87 SFDIITCRYAAHHFS-DVRKAVREVARVLKQDGRFLLVDH 125 (239)
T ss_dssp CEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cEEEEEECCchhhcc-CHHHHHHHHHHHcCCCcEEEEEEc
Confidence 999999999998876 889999999999999999999753
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-14 Score=136.67 Aligned_cols=99 Identities=18% Similarity=0.225 Sum_probs=74.3
Q ss_pred eEEEECCcCchHHHHHhhC------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccc
Q 036725 208 TALDTGCGVASWGAYLFKK------NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLI 280 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~ 280 (392)
+|||||||+|.++..|+++ +|+|+|+++.++..+..+.........+.++.++. .+|+ +.||+|++..+++
T Consensus 73 ~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~v~~~~~l~ 150 (261)
T 4gek_A 73 QVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVLNFTLQ 150 (261)
T ss_dssp EEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEEEEEEESCGG
T ss_pred EEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--cccccceeeeeee
Confidence 8999999999999999875 58899888766655544333222233566666665 7776 4599999999887
Q ss_pred ccccC-hHHHHHHHHHhccCCeEEEEEcC
Q 036725 281 PWSAN-DGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 281 ~~~~d-~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++... ...+|++++|+|||||+|+++..
T Consensus 151 ~~~~~~~~~~l~~i~~~LkpGG~lii~e~ 179 (261)
T 4gek_A 151 FLEPSERQALLDKIYQGLNPGGALVLSEK 179 (261)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ecCchhHhHHHHHHHHHcCCCcEEEEEec
Confidence 66532 25799999999999999999753
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.6e-14 Score=127.32 Aligned_cols=119 Identities=18% Similarity=0.276 Sum_probs=90.8
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI- 261 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~- 261 (392)
......+.+.+.+....+ +|||+|||+|.++..|+++ .++++|+++..+..+.. .+...++ +.+.+...+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~---~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~ 103 (219)
T 3dlc_A 28 IYPIIAENIINRFGITAG---TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALK-NIADANLNDRIQIVQGDVH 103 (219)
T ss_dssp HHHHHHHHHHHHHCCCEE---EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECBTT
T ss_pred ccHHHHHHHHHhcCCCCC---EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHH-HHHhccccCceEEEEcCHH
Confidence 345566777777664332 8999999999999999885 78999887765555443 3333343 3555566665
Q ss_pred cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 262 KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 262 ~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.+++++++||+|++..+++|+. +...+|+++.|+|||||++++..+..
T Consensus 104 ~~~~~~~~~D~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~ 151 (219)
T 3dlc_A 104 NIPIEDNYADLIVSRGSVFFWE-DVATAFREIYRILKSGGKTYIGGGFG 151 (219)
T ss_dssp BCSSCTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred HCCCCcccccEEEECchHhhcc-CHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 8899999999999999998774 88999999999999999999986443
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.5e-14 Score=126.73 Aligned_cols=157 Identities=17% Similarity=0.105 Sum_probs=102.6
Q ss_pred HHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCC
Q 036725 194 ELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPS 267 (392)
Q Consensus 194 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d 267 (392)
.+++.+....+. +|||+|||+|.++..+++. .++++|+++.++..+.. .+...+++.+.+..++. .+++++
T Consensus 28 ~~~~~~~~~~~~--~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 28 KVLKEFGLKEGM--TVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWE-KVNKLGLKNVEVLKSEENKIPLPD 104 (219)
T ss_dssp HHHHHHTCCTTC--EEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHH-HHHHHTCTTEEEEECBTTBCSSCS
T ss_pred HHHHHhCCCCCC--EEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEecccccCCCCC
Confidence 344444443443 8999999999999888764 68999988766555444 33344555566666665 788889
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCchhhhhhhcccChHhHHHHHHHHHHHHHHcCceecce
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHE 347 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~~~~~~~~w~~~~e~l~~~~~~i~~l~~~l~W~~~~~ 347 (392)
++||+|++..+++++. +...+++++.|+|||||++++.............+.. ......+.++.+...|+.+..
T Consensus 105 ~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~Gf~~~~~ 178 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELS-EPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEE-----VYSEWEVGLILEDAGIRVGRV 178 (219)
T ss_dssp SCEEEEEEESCGGGCS-SHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGG-----SCCHHHHHHHHHHTTCEEEEE
T ss_pred CCeeEEEeehhhhhcC-CHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhc-----ccCHHHHHHHHHHCCCEEEEE
Confidence 9999999999997775 8899999999999999999997633321100000000 001233556666667765433
Q ss_pred e-----ccEEEEEecCC
Q 036725 348 K-----GETAIWQKRIN 359 (392)
Q Consensus 348 ~-----~~~~iw~KP~~ 359 (392)
. ....+.+|+..
T Consensus 179 ~~~~~~~~~~~~~k~~~ 195 (219)
T 3dh0_A 179 VEVGKYCFGVYAMIVKQ 195 (219)
T ss_dssp EEETTTEEEEEEECC--
T ss_pred EeeCCceEEEEEEeccc
Confidence 2 22556667643
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.52 E-value=9.7e-14 Score=126.26 Aligned_cols=114 Identities=12% Similarity=0.175 Sum_probs=80.8
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCC-----cEEEEec
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVP-----AVIGVLG 259 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~-----~~~~~~~ 259 (392)
....+.+.+.+....+ .+|||||||+|.++..|+++ .++++|+++.++..+..+.. ..+++ .+.++.+
T Consensus 15 ~~~~~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~~~v~~~~~ 91 (219)
T 3jwg_A 15 QQRLGTVVAVLKSVNA--KKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLK-IDRLPEMQRKRISLFQS 91 (219)
T ss_dssp HHHHHHHHHHHHHTTC--CEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHT-GGGSCHHHHTTEEEEEC
T ss_pred HHHHHHHHHHHhhcCC--CEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH-hhccccccCcceEEEeC
Confidence 3344555555543333 38999999999999999875 68899887755544333221 22222 4556666
Q ss_pred cc-cCCCCCCccceEEecccccccccCh--HHHHHHHHHhccCCeEEEEE
Q 036725 260 TI-KLPYPSRAFDMAHCSRCLIPWSAND--GMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 260 ~~-~lp~~d~sFDlV~~~~~l~~~~~d~--~~~L~ei~RvLkPGG~lvl~ 306 (392)
+. .+++++++||+|++..+++++. ++ ..+++++.++|||||+++.+
T Consensus 92 d~~~~~~~~~~fD~V~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 92 SLVYRDKRFSGYDAATVIEVIEHLD-ENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp CSSSCCGGGTTCSEEEEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred cccccccccCCCCEEEEHHHHHhCC-HHHHHHHHHHHHHhhCCCEEEEEc
Confidence 65 6677788999999999998875 44 68999999999999966654
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=9.3e-14 Score=130.45 Aligned_cols=115 Identities=20% Similarity=0.281 Sum_probs=89.8
Q ss_pred HHHHHHHHhhCC-CCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-c
Q 036725 189 DAYIEELASVIP-MDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~ 262 (392)
......+++.+. ..++ .+|||||||+|.++..+++. .++++|+++.++..+.. .+...++ +.+.++.++. .
T Consensus 31 ~~~~~~~l~~l~~~~~~--~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~ 107 (267)
T 3kkz_A 31 PEVTLKALSFIDNLTEK--SLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNR-NARQSGLQNRVTGIVGSMDD 107 (267)
T ss_dssp HHHHHHHHTTCCCCCTT--CEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCTTS
T ss_pred HHHHHHHHHhcccCCCC--CEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHH-HHHHcCCCcCcEEEEcChhh
Confidence 456666777776 2233 48999999999999999987 78999988765555443 3344455 3466666665 8
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+|+++++||+|++..+++++ +...+++++.++|||||++++..+
T Consensus 108 ~~~~~~~fD~i~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 108 LPFRNEELDLIWSEGAIYNI--GFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp CCCCTTCEEEEEESSCGGGT--CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred CCCCCCCEEEEEEcCCceec--CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 88889999999999998776 789999999999999999999764
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=9.6e-14 Score=129.12 Aligned_cols=116 Identities=18% Similarity=0.267 Sum_probs=89.5
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCc-EEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPA-VIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~~~~-~l 263 (392)
......+++.+..... ..+|||||||+|.++..+++. .++++|+++..+..+.. .+...+++. +.++.++. .+
T Consensus 31 ~~~~~~~l~~l~~~~~-~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~ 108 (257)
T 3f4k_A 31 PEATRKAVSFINELTD-DAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNE-NAVKANCADRVKGITGSMDNL 108 (257)
T ss_dssp HHHHHHHHTTSCCCCT-TCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCTTSC
T ss_pred HHHHHHHHHHHhcCCC-CCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECChhhC
Confidence 5566667777743222 238999999999999999886 78999988765555433 344455543 56666665 88
Q ss_pred CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 264 PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
|+++++||+|++..+++++ +...+++++.|+|||||+++++.+
T Consensus 109 ~~~~~~fD~v~~~~~l~~~--~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 109 PFQNEELDLIWSEGAIYNI--GFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp SSCTTCEEEEEEESCSCCC--CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCCCCCEEEEEecChHhhc--CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 8989999999999988766 688999999999999999999864
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4e-14 Score=131.90 Aligned_cols=116 Identities=20% Similarity=0.298 Sum_probs=90.5
Q ss_pred ccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC--CcEEEEecc
Q 036725 186 HGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV--PAVIGVLGT 260 (392)
Q Consensus 186 ~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~--~~~~~~~~~ 260 (392)
......++.+++.+...++. +|||||||+|.++..++++ .++++|+++ .+++.++++.. +.+.++.++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~~d 110 (266)
T 3ujc_A 38 SGGLEATKKILSDIELNENS--KVLDIGSGLGGGCMYINEKYGAHTHGIDICS-----NIVNMANERVSGNNKIIFEAND 110 (266)
T ss_dssp TTHHHHHHHHTTTCCCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEEESCH-----HHHHHHHHTCCSCTTEEEEECC
T ss_pred cchHHHHHHHHHhcCCCCCC--EEEEECCCCCHHHHHHHHHcCCEEEEEeCCH-----HHHHHHHHHhhcCCCeEEEECc
Confidence 34455677777777655544 8999999999999999885 688887655 46666666542 455556666
Q ss_pred c-cCCCCCCccceEEecccccccc-cChHHHHHHHHHhccCCeEEEEEcC
Q 036725 261 I-KLPYPSRAFDMAHCSRCLIPWS-ANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 261 ~-~lp~~d~sFDlV~~~~~l~~~~-~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
. .+|+++++||+|++..+++|+. .+...+|+++.|+|||||++++..+
T Consensus 111 ~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 160 (266)
T 3ujc_A 111 ILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY 160 (266)
T ss_dssp TTTCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 5 7899999999999999998873 3678999999999999999999764
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=128.27 Aligned_cols=111 Identities=19% Similarity=0.228 Sum_probs=85.8
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcC-CCcEEEEeccc-cCCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERG-VPAVIGVLGTI-KLPYP 266 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg-~~~~~~~~~~~-~lp~~ 266 (392)
...+.+.++...+ .+|||||||+|.++..++++ .++++|+++ .+++.++++. .+.+.++.++. .+|++
T Consensus 33 ~~~l~~~~~~~~~--~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~d~~~~~~~ 105 (253)
T 3g5l_A 33 WHELKKMLPDFNQ--KTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSE-----RMLTEAKRKTTSPVVCYEQKAIEDIAIE 105 (253)
T ss_dssp HHHHHTTCCCCTT--CEEEEETCTTCHHHHHHHHTTCSEEEEEESCH-----HHHHHHHHHCCCTTEEEEECCGGGCCCC
T ss_pred HHHHHHhhhccCC--CEEEEECCCCCHHHHHHHHcCCCEEEEEECCH-----HHHHHHHHhhccCCeEEEEcchhhCCCC
Confidence 3456666664343 48999999999999999987 578887765 4555565543 24555566665 88998
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+++||+|++..+++++. +...+|+++.|+|||||+++++.+..
T Consensus 106 ~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~ 148 (253)
T 3g5l_A 106 PDAYNVVLSSLALHYIA-SFDDICKKVYINLKSSGSFIFSVEHP 148 (253)
T ss_dssp TTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CCCeEEEEEchhhhhhh-hHHHHHHHHHHHcCCCcEEEEEeCCC
Confidence 99999999999887774 88999999999999999999986443
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-13 Score=122.96 Aligned_cols=96 Identities=16% Similarity=0.206 Sum_probs=75.6
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
+|||+|||+|.++..|+++ .++++|+++ .+++.++++....+.+..++. .++++ ++||+|++..+++++.
T Consensus 48 ~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~~~- 120 (220)
T 3hnr_A 48 NVLEFGVGTGNLTNKLLLAGRTVYGIEPSR-----EMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYAFHHLT- 120 (220)
T ss_dssp EEEEECCTTSHHHHHHHHTTCEEEEECSCH-----HHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESCGGGSC-
T ss_pred eEEEeCCCCCHHHHHHHhCCCeEEEEeCCH-----HHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcchhcCC-
Confidence 8999999999999999987 677886654 456666655333444555555 77887 9999999999997776
Q ss_pred ChHH--HHHHHHHhccCCeEEEEEcCCC
Q 036725 285 NDGM--YMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 285 d~~~--~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++.. +|+++.|+|||||++++..+..
T Consensus 121 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 148 (220)
T 3hnr_A 121 DDEKNVAIAKYSQLLNKGGKIVFADTIF 148 (220)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 5655 9999999999999999987544
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=129.33 Aligned_cols=113 Identities=17% Similarity=0.127 Sum_probs=84.9
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCC-CCC
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLP-YPS 267 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp-~~d 267 (392)
..+++.+... ..+|||||||+|.++..+++. .++++|+++.++..+.. .+...++ +.+.++.++. .++ +++
T Consensus 59 ~~~l~~~~~~---~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 59 DRVLAEMGPQ---KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQ-AAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHHTCSS---CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHHhcCCC---CCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHH-HHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 3444444432 238999999999999999987 78899887765544333 2333454 4566666665 666 788
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++||+|++..+++++. ++..+|+++.|+|||||++++..+..
T Consensus 135 ~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (285)
T 4htf_A 135 TPVDLILFHAVLEWVA-DPRSVLQTLWSVLRPGGVLSLMFYNA 176 (285)
T ss_dssp SCEEEEEEESCGGGCS-CHHHHHHHHHHTEEEEEEEEEEEEBH
T ss_pred CCceEEEECchhhccc-CHHHHHHHHHHHcCCCeEEEEEEeCC
Confidence 9999999999997775 88999999999999999999987543
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.48 E-value=8.4e-14 Score=128.70 Aligned_cols=114 Identities=17% Similarity=0.201 Sum_probs=85.0
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC-
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL- 263 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l- 263 (392)
.+...+.+...++.... ..+|||||||+|.++..++++ .++++|+++ .+++.++++ +.++..+. .+
T Consensus 25 ~~~~~~~~~~~l~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~----~~~~~~d~~~~~ 94 (240)
T 3dli_A 25 RELVKARLRRYIPYFKG-CRRVLDIGCGRGEFLELCKEEGIESIGVDINE-----DMIKFCEGK----FNVVKSDAIEYL 94 (240)
T ss_dssp HHHHHHHHGGGGGGTTT-CSCEEEETCTTTHHHHHHHHHTCCEEEECSCH-----HHHHHHHTT----SEEECSCHHHHH
T ss_pred HHHHHHHHHHHHhhhcC-CCeEEEEeCCCCHHHHHHHhCCCcEEEEECCH-----HHHHHHHhh----cceeeccHHHHh
Confidence 34555666666553332 248999999999999999886 788886654 566666666 23344444 43
Q ss_pred -CCCCCccceEEeccccccccc-ChHHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 264 -PYPSRAFDMAHCSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 264 -p~~d~sFDlV~~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
|+++++||+|++..+++|+.. +...+++++.|+|||||++++..+...
T Consensus 95 ~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 144 (240)
T 3dli_A 95 KSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPT 144 (240)
T ss_dssp HTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred hhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 888999999999999988763 238999999999999999999886653
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=126.96 Aligned_cols=97 Identities=15% Similarity=0.162 Sum_probs=79.1
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
+|||||||+|.++..++++ .++++|+++. +++.|+++....+.++.++. .+ +++++||+|++..+++|+.
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~-----~~~~a~~~~~~~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~~~- 117 (250)
T 2p7i_A 45 NLLELGSFKGDFTSRLQEHFNDITCVEASEE-----AISHAQGRLKDGITYIHSRFEDA-QLPRRYDNIVLTHVLEHID- 117 (250)
T ss_dssp CEEEESCTTSHHHHHHTTTCSCEEEEESCHH-----HHHHHHHHSCSCEEEEESCGGGC-CCSSCEEEEEEESCGGGCS-
T ss_pred cEEEECCCCCHHHHHHHHhCCcEEEEeCCHH-----HHHHHHHhhhCCeEEEEccHHHc-CcCCcccEEEEhhHHHhhc-
Confidence 7999999999999999987 7889977654 55566655432555666665 55 5789999999999998876
Q ss_pred ChHHHHHHHH-HhccCCeEEEEEcCCCc
Q 036725 285 NDGMYMMEID-RVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 285 d~~~~L~ei~-RvLkPGG~lvl~~p~~~ 311 (392)
++..+|+++. |+|||||+++++.|...
T Consensus 118 ~~~~~l~~~~~~~LkpgG~l~i~~~~~~ 145 (250)
T 2p7i_A 118 DPVALLKRINDDWLAEGGRLFLVCPNAN 145 (250)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred CHHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence 8899999999 99999999999987653
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-13 Score=127.21 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=76.4
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc---CCCcEEEEeccc-cCCCCCCccceEEeccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER---GVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLI 280 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r---g~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~ 280 (392)
.+|||||||+|.++..++++ .++++|+++. +++.++++ +.+.+.+..++. .+|+++++||+|++..+++
T Consensus 41 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 41 PVFLELGVGTGRIALPLIARGYRYIALDADAA-----MLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH 115 (263)
T ss_dssp CEEEEETCTTSTTHHHHHTTTCEEEEEESCHH-----HHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred CEEEEeCCcCCHHHHHHHHCCCEEEEEECCHH-----HHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence 48999999999999999887 6888877665 44444443 345566666665 8888899999999999886
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEE
Q 036725 281 PWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 281 ~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
++. +...++.++.|+|||||++++.
T Consensus 116 ~~~-~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 116 LVP-DWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GCT-THHHHHHHHHHHEEEEEEEEEE
T ss_pred hcC-CHHHHHHHHHHHCCCCcEEEEE
Confidence 665 8899999999999999999987
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=128.67 Aligned_cols=115 Identities=20% Similarity=0.323 Sum_probs=87.3
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
+.+.+.......++ .+|||||||+|.++..++++ .++++|+++..+..+.. .+...+++++.+...+. .+++
T Consensus 25 l~~~l~~~~~~~~~--~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~d~~~~~~ 101 (276)
T 3mgg_A 25 LEKLLHHDTVYPPG--AKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARE-NTEKNGIKNVKFLQANIFSLPF 101 (276)
T ss_dssp HHHHHHTTCCCCTT--CEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCGGGCCS
T ss_pred HHHHHhhcccCCCC--CeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEcccccCCC
Confidence 33444444333333 48999999999999999875 68899887765544333 33445666666666665 8899
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
++++||+|++..+++++. ++..++.++.|+|||||++++..+.
T Consensus 102 ~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (276)
T 3mgg_A 102 EDSSFDHIFVCFVLEHLQ-SPEEALKSLKKVLKPGGTITVIEGD 144 (276)
T ss_dssp CTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCCeeEEEEechhhhcC-CHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 999999999999987776 8889999999999999999997643
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-13 Score=128.88 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=85.9
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-c
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-K 262 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~ 262 (392)
....++.+++.+...++. +|||||||+|.++..++++ .++++|+++..+..+.. .+.+.+. +.+.+...+. .
T Consensus 49 ~~~~~~~~~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~ 125 (287)
T 1kpg_A 49 QIAKIDLALGKLGLQPGM--TLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQ-LVANSENLRSKRVLLAGWEQ 125 (287)
T ss_dssp HHHHHHHHHTTTTCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHTCCCCSCEEEEESCGGG
T ss_pred HHHHHHHHHHHcCCCCcC--EEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHhcCCCCCeEEEECChhh
Confidence 344667777777655544 8999999999999999854 78899887654444332 2223343 3555566665 5
Q ss_pred CCCCCCccceEEecccccccc-cChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 263 LPYPSRAFDMAHCSRCLIPWS-ANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~-~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+| ++||+|++..+++|+. ++...+++++.|+|||||++++..+..
T Consensus 126 ~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 126 FD---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp CC---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred CC---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 54 8899999999998885 367899999999999999999976443
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-13 Score=127.08 Aligned_cols=160 Identities=20% Similarity=0.334 Sum_probs=106.5
Q ss_pred cCCCCCCCCccccCCCCCCCCCCCCCCCCCCcccccCCCCCchhhhhhhccceeccCCeEEecCCCCCCCccHHHHHHHH
Q 036725 116 RHCPPPDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGGGTQFPHGADAYIEEL 195 (392)
Q Consensus 116 r~C~~~~~~~~c~~~~p~gY~~Pl~wp~s~~~~wy~~~p~~~l~~~k~~q~w~~~~~~~~~fp~~g~~f~~~~~~~i~~l 195 (392)
-+|+. .|++..+..||...++..... ...+.+...+..+.+.|.. ...|....+.+.+.+
T Consensus 19 ~~C~~----~~~~~~~~~Gy~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 78 (269)
T 1p91_A 19 YICPQ----RHQFDMAKEGYVNLLPVQHKR-----SRDPGDSAEMMQARRAFLD-----------AGHYQPLRDAIVAQL 78 (269)
T ss_dssp EECTT----CCEEEBCTTSCEECSCSSSSC-----SCCCSSSHHHHHHHHHHHT-----------TTTTHHHHHHHHHHH
T ss_pred EECCC----CCcCCcCCCEEEEeecccccC-----CCCCCCCHHHHHHHHHHHh-----------CCCcHHHHHHHHHHH
Confidence 37876 568888899998877654433 1223444555555455543 122333334444555
Q ss_pred HhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccc
Q 036725 196 ASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFD 271 (392)
Q Consensus 196 ~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFD 271 (392)
...++ ..+ .+|||||||+|.++..+++. .++++|+++ .+++.|++++....+...+...+|+++++||
T Consensus 79 ~~~~~-~~~--~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD 150 (269)
T 1p91_A 79 RERLD-DKA--TAVLDIGCGEGYYTHAFADALPEITTFGLDVSK-----VAIKAAAKRYPQVTFCVASSHRLPFSDTSMD 150 (269)
T ss_dssp HHHSC-TTC--CEEEEETCTTSTTHHHHHHTCTTSEEEEEESCH-----HHHHHHHHHCTTSEEEECCTTSCSBCTTCEE
T ss_pred HHhcC-CCC--CEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCH-----HHHHHHHHhCCCcEEEEcchhhCCCCCCcee
Confidence 55443 122 38999999999999999875 578887654 4666777666444444444447888899999
Q ss_pred eEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 272 MAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 272 lV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
+|++..+. ..+.++.|+|||||++++..|...
T Consensus 151 ~v~~~~~~--------~~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 151 AIIRIYAP--------CKAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp EEEEESCC--------CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEEEeCCh--------hhHHHHHHhcCCCcEEEEEEcCHH
Confidence 99986542 248999999999999999887653
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.46 E-value=7.6e-14 Score=126.41 Aligned_cols=113 Identities=12% Similarity=0.126 Sum_probs=75.9
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHH-----------cCCCcEEEEe
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALE-----------RGVPAVIGVL 258 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~-----------rg~~~~~~~~ 258 (392)
+..+.+.+....+. +|||+|||+|..+..|+++ .|+++|+++.++..+..+.... ...+.+.++.
T Consensus 11 l~~~~~~l~~~~~~--~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 88 (203)
T 1pjz_A 11 LQQYWSSLNVVPGA--RVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWC 88 (203)
T ss_dssp HHHHHHHHCCCTTC--EEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEE
T ss_pred HHHHHHhcccCCCC--EEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEE
Confidence 33333444333333 8999999999999999986 6889988776555443221100 0112334444
Q ss_pred ccc-cCCCCC-CccceEEecccccccccC-hHHHHHHHHHhccCCeEEEEE
Q 036725 259 GTI-KLPYPS-RAFDMAHCSRCLIPWSAN-DGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 259 ~~~-~lp~~d-~sFDlV~~~~~l~~~~~d-~~~~L~ei~RvLkPGG~lvl~ 306 (392)
++. .+++++ ++||+|++..+++++..+ ...+++++.|+|||||++++.
T Consensus 89 ~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 89 GDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp ECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred CccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 444 888765 899999998888776532 357999999999999984443
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.9e-14 Score=130.16 Aligned_cols=113 Identities=16% Similarity=0.209 Sum_probs=85.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC--CcEEEEeccc-c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV--PAVIGVLGTI-K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~--~~~~~~~~~~-~ 262 (392)
...+..+++.+....+ .+|||||||+|.++..|+++ .++++|+++. +++.++++.. +.+.+...+. .
T Consensus 79 ~~~~~~~l~~l~~~~~--~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~d~~~ 151 (254)
T 1xtp_A 79 IEGSRNFIASLPGHGT--SRALDCGAGIGRITKNLLTKLYATTDLLEPVKH-----MLEEAKRELAGMPVGKFILASMET 151 (254)
T ss_dssp HHHHHHHHHTSTTCCC--SEEEEETCTTTHHHHHTHHHHCSEEEEEESCHH-----HHHHHHHHTTTSSEEEEEESCGGG
T ss_pred HHHHHHHHHhhcccCC--CEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHH-----HHHHHHHHhccCCceEEEEccHHH
Confidence 3445666666654333 48999999999999998876 5889987664 4445554432 4555566665 7
Q ss_pred CCCCCCccceEEeccccccccc-ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+++++++||+|++..+++|+.+ +...+|+++.|+|||||++++..+
T Consensus 152 ~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 152 ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp CCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 8888999999999999988752 468999999999999999999874
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-13 Score=129.85 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=88.4
Q ss_pred HHHHHHHhhCC-CCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-cC
Q 036725 190 AYIEELASVIP-MDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KL 263 (392)
Q Consensus 190 ~~i~~l~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~l 263 (392)
...+.+++.+. ..++ .+|||||||+|.++..|+++ .++++|+++.++..+.. .+...++. .+.+..++. .+
T Consensus 103 ~~~~~l~~~l~~~~~~--~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~ 179 (312)
T 3vc1_A 103 AQAEFLMDHLGQAGPD--DTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNR-RARELRIDDHVRSRVCNMLDT 179 (312)
T ss_dssp HHHHHHHTTSCCCCTT--CEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCTTSC
T ss_pred HHHHHHHHHhccCCCC--CEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-HHHHcCCCCceEEEECChhcC
Confidence 34456777776 4344 38999999999999999875 78999887765554433 33445554 566666665 88
Q ss_pred CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 264 PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
|+++++||+|++..+++++ +...+|.++.|+|||||++++..+.
T Consensus 180 ~~~~~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~~~~~~ 223 (312)
T 3vc1_A 180 PFDKGAVTASWNNESTMYV--DLHDLFSEHSRFLKVGGRYVTITGC 223 (312)
T ss_dssp CCCTTCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCCCCCEeEEEECCchhhC--CHHHHHHHHHHHcCCCcEEEEEEcc
Confidence 8999999999999988776 4899999999999999999997643
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-12 Score=115.49 Aligned_cols=137 Identities=15% Similarity=0.089 Sum_probs=95.0
Q ss_pred cCCeEEecC-CCCCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHH
Q 036725 171 EGNVFRFPG-GGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFAL 247 (392)
Q Consensus 171 ~~~~~~fp~-~g~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~ 247 (392)
.+..+.|.. .+...+...+...+.+++.+....+ .+|||+|||+|.++..+++. .++++|+++..+..+.. .+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~-~~~ 95 (194)
T 1dus_A 19 RGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKD--DDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKE-NIK 95 (194)
T ss_dssp TTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCCTT--CEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHH-HHH
T ss_pred CCCceEEEeCCCcCCccccchHHHHHHHHcccCCC--CeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHH-HHH
Confidence 344455532 3332222233566777777765444 38999999999999999876 78999888765554433 333
Q ss_pred HcCCCc--EEEEeccccCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 248 ERGVPA--VIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 248 ~rg~~~--~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
..+++. +.+...+...++++++||+|+++..+++...+...+++++.++|+|||++++..+..
T Consensus 96 ~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 96 LNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp HTTCTTSCEEEEECSTTTTCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred HcCCCccceEEEECchhcccccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 446664 666666664456678999999987764433456789999999999999999987544
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-13 Score=122.69 Aligned_cols=97 Identities=20% Similarity=0.161 Sum_probs=78.9
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccccccc-
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWS- 283 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~- 283 (392)
+|||+|||+|.++..|+++ .++++|+++ .+++.++++.. .+.++.++. .+++++++||+|++..+++|+.
T Consensus 44 ~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~ 117 (203)
T 3h2b_A 44 VILDVGSGTGRWTGHLASLGHQIEGLEPAT-----RLVELARQTHP-SVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGP 117 (203)
T ss_dssp CEEEETCTTCHHHHHHHHTTCCEEEECCCH-----HHHHHHHHHCT-TSEEECCCGGGGGGSCCCEEEEEEESSSTTCCT
T ss_pred eEEEecCCCCHHHHHHHhcCCeEEEEeCCH-----HHHHHHHHhCC-CCeEEeCcccccccCCCCeEEEEehhhHhcCCH
Confidence 8999999999999999987 788887654 46666666643 344455554 8888899999999999998876
Q ss_pred cChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++...+|+++.++|||||+++++.+..
T Consensus 118 ~~~~~~l~~~~~~L~pgG~l~i~~~~~ 144 (203)
T 3h2b_A 118 GELPDALVALRMAVEDGGGLLMSFFSG 144 (203)
T ss_dssp TTHHHHHHHHHHTEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 366899999999999999999987544
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-13 Score=123.20 Aligned_cols=114 Identities=15% Similarity=0.189 Sum_probs=81.5
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCC-----cEEEEecc
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVP-----AVIGVLGT 260 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~-----~~~~~~~~ 260 (392)
...+.+.+.+....+ .+|||||||+|.++..|+++ .++++|+++.++..+..+ +...+++ .+.+..++
T Consensus 16 ~~~~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~v~~~~~d 92 (217)
T 3jwh_A 16 QRMNGVVAALKQSNA--RRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQER-LDRLRLPRNQWERLQLIQGA 92 (217)
T ss_dssp HHHHHHHHHHHHTTC--CEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHH-HTTCCCCHHHHTTEEEEECC
T ss_pred HHHHHHHHHHHhcCC--CEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHH-HHHhcCCcccCcceEEEeCC
Confidence 344555555543333 38999999999999999875 688998877554443332 2223333 45666666
Q ss_pred c-cCCCCCCccceEEecccccccccCh--HHHHHHHHHhccCCeEEEEEc
Q 036725 261 I-KLPYPSRAFDMAHCSRCLIPWSAND--GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 261 ~-~lp~~d~sFDlV~~~~~l~~~~~d~--~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. .+++++++||+|++..+++++. ++ ..+++++.|+|||||+++++.
T Consensus 93 ~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 93 LTYQDKRFHGYDAATVIEVIEHLD-LSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp TTSCCGGGCSCSEEEEESCGGGCC-HHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred cccccccCCCcCEEeeHHHHHcCC-HHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 5 5666678999999999998775 44 789999999999999776654
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.3e-13 Score=122.81 Aligned_cols=111 Identities=22% Similarity=0.270 Sum_probs=86.3
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcC-CCcEEEEeccc-cCCC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERG-VPAVIGVLGTI-KLPY 265 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg-~~~~~~~~~~~-~lp~ 265 (392)
..++.+.+.++ ++. +|||||||+|.++..++++ .++++|+++ .+++.++++. .+.+.++..+. .+++
T Consensus 42 ~~~~~l~~~~~--~~~--~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~d~~~~~~ 112 (242)
T 3l8d_A 42 TIIPFFEQYVK--KEA--EVLDVGCGDGYGTYKLSRTGYKAVGVDISE-----VMIQKGKERGEGPDLSFIKGDLSSLPF 112 (242)
T ss_dssp THHHHHHHHSC--TTC--EEEEETCTTSHHHHHHHHTTCEEEEEESCH-----HHHHHHHTTTCBTTEEEEECBTTBCSS
T ss_pred HHHHHHHHHcC--CCC--eEEEEcCCCCHHHHHHHHcCCeEEEEECCH-----HHHHHHHhhcccCCceEEEcchhcCCC
Confidence 35566666665 333 8999999999999999987 678887655 4566666552 24455555555 8889
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++++||+|++..+++|+. ++..++.++.++|||||+++++.+..
T Consensus 113 ~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~i~~~~~ 156 (242)
T 3l8d_A 113 ENEQFEAIMAINSLEWTE-EPLRALNEIKRVLKSDGYACIAILGP 156 (242)
T ss_dssp CTTCEEEEEEESCTTSSS-CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CCCCccEEEEcChHhhcc-CHHHHHHHHHHHhCCCeEEEEEEcCC
Confidence 899999999999998775 88999999999999999999987443
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=131.03 Aligned_cols=119 Identities=17% Similarity=0.214 Sum_probs=85.3
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcC---CCcEEEEeccc-c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERG---VPAVIGVLGTI-K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg---~~~~~~~~~~~-~ 262 (392)
+.+.+.+.+.+....+ .+|||||||+|.++..|+++ .++++|+++.++..+..+....+. ...+.+..++. .
T Consensus 43 ~~~~~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~ 120 (293)
T 3thr_A 43 AEYKAWLLGLLRQHGC--HRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT 120 (293)
T ss_dssp HHHHHHHHHHHHHTTC--CEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred HHHHHHHHHHhcccCC--CEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh
Confidence 4455555555543333 38999999999999999987 688998877655554433221111 12233444443 6
Q ss_pred CC---CCCCccceEEec-ccccccccC-------hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 263 LP---YPSRAFDMAHCS-RCLIPWSAN-------DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 263 lp---~~d~sFDlV~~~-~~l~~~~~d-------~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++ +++++||+|+|. .+++|+. + ...+|+++.|+|||||+|+++.+..
T Consensus 121 ~~~~~~~~~~fD~V~~~g~~l~~~~-~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 178 (293)
T 3thr_A 121 LDKDVPAGDGFDAVICLGNSFAHLP-DSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY 178 (293)
T ss_dssp HHHHSCCTTCEEEEEECTTCGGGSC-CSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred CccccccCCCeEEEEEcChHHhhcC-ccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence 66 788999999998 7887776 5 6899999999999999999987654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-13 Score=122.55 Aligned_cols=112 Identities=17% Similarity=0.263 Sum_probs=82.8
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcC--CCcEEEEeccc-cCCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERG--VPAVIGVLGTI-KLPY 265 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg--~~~~~~~~~~~-~lp~ 265 (392)
+...+...+.... ..+|||+|||+|.++..|+++ .++++|+++. +++.++++. .+.+.+...+. .++
T Consensus 39 ~~~~l~~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~d~~~~~- 110 (216)
T 3ofk_A 39 HTQLLRLSLSSGA--VSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPR-----AIGRACQRTKRWSHISWAATDILQFS- 110 (216)
T ss_dssp HHHHHHHHTTTSS--EEEEEEECCTTSHHHHHHGGGEEEEEEEESCHH-----HHHHHHHHTTTCSSEEEEECCTTTCC-
T ss_pred HHHHHHHHcccCC--CCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHH-----HHHHHHHhcccCCCeEEEEcchhhCC-
Confidence 3344444555333 348999999999999999987 7888877654 444554432 23455666665 666
Q ss_pred CCCccceEEecccccccccCh---HHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 266 PSRAFDMAHCSRCLIPWSAND---GMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~---~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
++++||+|++..+++|+. ++ ..++.++.++|||||+++++.+...
T Consensus 111 ~~~~fD~v~~~~~l~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 158 (216)
T 3ofk_A 111 TAELFDLIVVAEVLYYLE-DMTQMRTAIDNMVKMLAPGGHLVFGSARDA 158 (216)
T ss_dssp CSCCEEEEEEESCGGGSS-SHHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred CCCCccEEEEccHHHhCC-CHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Confidence 689999999999997776 54 5789999999999999999876653
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.9e-13 Score=118.08 Aligned_cols=109 Identities=17% Similarity=0.262 Sum_probs=82.1
Q ss_pred HHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccc
Q 036725 195 LASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFD 271 (392)
Q Consensus 195 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFD 271 (392)
+.+.+....+. +|||+|||+|.++..++++ .++++|+++.++..+.. .+...+.+.+.+...+. .+++ +++||
T Consensus 24 l~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~d~~~~~~-~~~~D 99 (199)
T 2xvm_A 24 VLEAVKVVKPG--KTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVER-IKSIENLDNLHTRVVDLNNLTF-DRQYD 99 (199)
T ss_dssp HHHHTTTSCSC--EEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHHTCTTEEEEECCGGGCCC-CCCEE
T ss_pred HHHHhhccCCC--eEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHhCCCCCcEEEEcchhhCCC-CCCce
Confidence 34445443443 8999999999999999987 78999888765555443 33344555566666665 7777 88999
Q ss_pred eEEeccccccccc-ChHHHHHHHHHhccCCeEEEEEc
Q 036725 272 MAHCSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 272 lV~~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+|++..+++++.. +...++.++.++|||||++++..
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 136 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 9999998877653 45899999999999999988764
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=6.2e-13 Score=127.25 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=86.5
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-c
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-K 262 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~ 262 (392)
....++.+++.+...++. +|||||||+|.++..++++ .|+++|+++.++..+.. .+...+++ .+.+...+. .
T Consensus 57 ~~~~~~~~~~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~ 133 (302)
T 3hem_A 57 QYAKRKLALDKLNLEPGM--TLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKA-MFDEVDSPRRKEVRIQGWEE 133 (302)
T ss_dssp HHHHHHHHHHTTCCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHH-HHHHSCCSSCEEEEECCGGG
T ss_pred HHHHHHHHHHHcCCCCcC--EEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEECCHHH
Confidence 344667777777655554 8999999999999999876 68899887765554443 33344554 566666665 4
Q ss_pred CCCCCCccceEEeccccccccc--------ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSA--------NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~--------d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+ +++||+|++..+++|+.+ +...+++++.|+|||||++++...
T Consensus 134 ~---~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 184 (302)
T 3hem_A 134 F---DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI 184 (302)
T ss_dssp C---CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred c---CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence 4 789999999999988752 127899999999999999999764
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-14 Score=142.44 Aligned_cols=115 Identities=11% Similarity=0.113 Sum_probs=89.8
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEE--EEeccc-c
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVI--GVLGTI-K 262 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~--~~~~~~-~ 262 (392)
...+.+.+++.+....+. +|||||||+|.++..|+++ .++++|+ ++.+++.|++++++... +..++. .
T Consensus 92 ~~~~~~~l~~~~~~~~~~--~VLDiGcG~G~~~~~l~~~g~~v~gvD~-----s~~~~~~a~~~~~~~~~~~~~~~~~~~ 164 (416)
T 4e2x_A 92 FAMLARDFLATELTGPDP--FIVEIGCNDGIMLRTIQEAGVRHLGFEP-----SSGVAAKAREKGIRVRTDFFEKATADD 164 (416)
T ss_dssp HHHHHHHHHHTTTCSSSC--EEEEETCTTTTTHHHHHHTTCEEEEECC-----CHHHHHHHHTTTCCEECSCCSHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCC--EEEEecCCCCHHHHHHHHcCCcEEEECC-----CHHHHHHHHHcCCCcceeeechhhHhh
Confidence 455667777777654443 8999999999999999987 5677755 45677788887765442 112222 5
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+|+++++||+|++..+++|+. ++..+|+++.|+|||||++++..|..
T Consensus 165 l~~~~~~fD~I~~~~vl~h~~-d~~~~l~~~~r~LkpgG~l~i~~~~~ 211 (416)
T 4e2x_A 165 VRRTEGPANVIYAANTLCHIP-YVQSVLEGVDALLAPDGVFVFEDPYL 211 (416)
T ss_dssp HHHHHCCEEEEEEESCGGGCT-THHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred cccCCCCEEEEEECChHHhcC-CHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 677789999999999998887 89999999999999999999987764
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-13 Score=127.04 Aligned_cols=110 Identities=18% Similarity=0.199 Sum_probs=85.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
..+.+.+.+.++..++ .+|||||||+|.++..+++. .++++|+++ .+++.++++. ++.++.++. .+|+
T Consensus 20 ~~~~~~l~~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~~--~~~~~~~d~~~~~~ 90 (261)
T 3ege_A 20 IRIVNAIINLLNLPKG--SVIADIGAGTGGYSVALANQGLFVYAVEPSI-----VMRQQAVVHP--QVEWFTGYAENLAL 90 (261)
T ss_dssp HHHHHHHHHHHCCCTT--CEEEEETCTTSHHHHHHHTTTCEEEEECSCH-----HHHHSSCCCT--TEEEECCCTTSCCS
T ss_pred HHHHHHHHHHhCCCCC--CEEEEEcCcccHHHHHHHhCCCEEEEEeCCH-----HHHHHHHhcc--CCEEEECchhhCCC
Confidence 3466777777764444 38999999999999999976 688887655 4555554443 555666665 8899
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
++++||+|++..+++|+. +...+++++.|+|| ||++++..+.
T Consensus 91 ~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 91 PDKSVDGVISILAIHHFS-HLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp CTTCBSEEEEESCGGGCS-SHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred CCCCEeEEEEcchHhhcc-CHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 999999999999998875 89999999999999 9988776544
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=7.7e-13 Score=126.42 Aligned_cols=113 Identities=12% Similarity=0.131 Sum_probs=84.0
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhh---C--CcEEEeCCccChHHHHHHHHHH-cCCCcEEEEeccc-
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFK---K--NVITMSFAPRDSHEAQVQFALE-RGVPAVIGVLGTI- 261 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~---~--~v~~vd~s~~d~~~a~~~~a~~-rg~~~~~~~~~~~- 261 (392)
..+.+.+.+.... . ..+|||||||+|.++..|++ . .++++|+++.++..+....... ...+.+.++.++.
T Consensus 23 ~~~~~~l~~~~~~-~--~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~ 99 (299)
T 3g5t_A 23 SDFYKMIDEYHDG-E--RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSD 99 (299)
T ss_dssp HHHHHHHHHHCCS-C--CSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTT
T ss_pred HHHHHHHHHHhcC-C--CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHH
Confidence 4456666666542 2 34899999999999999994 3 7899988776555544333222 1235566666665
Q ss_pred cCCCCC------CccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 262 KLPYPS------RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 262 ~lp~~d------~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.+++++ ++||+|++..+++++ +...++.++.|+|||||+|++.
T Consensus 100 ~~~~~~~~~~~~~~fD~V~~~~~l~~~--~~~~~l~~~~~~LkpgG~l~i~ 148 (299)
T 3g5t_A 100 DFKFLGADSVDKQKIDMITAVECAHWF--DFEKFQRSAYANLRKDGTIAIW 148 (299)
T ss_dssp CCGGGCTTTTTSSCEEEEEEESCGGGS--CHHHHHHHHHHHEEEEEEEEEE
T ss_pred hCCccccccccCCCeeEEeHhhHHHHh--CHHHHHHHHHHhcCCCcEEEEE
Confidence 778777 899999999988666 8999999999999999999983
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-13 Score=127.21 Aligned_cols=102 Identities=16% Similarity=0.210 Sum_probs=75.8
Q ss_pred cceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccccc
Q 036725 206 VRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~ 281 (392)
..+|||||||+|.++..|+++ .++++|+++.++..+..... ..+...+.++..+. .+++++++||+|++..++++
T Consensus 80 ~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 158 (241)
T 2ex4_A 80 TSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLG-EEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH 158 (241)
T ss_dssp CSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTG-GGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred CCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhh-hcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence 348999999999999998876 68889887654443332211 11122344555555 78888889999999999877
Q ss_pred cccCh--HHHHHHHHHhccCCeEEEEEcCC
Q 036725 282 WSAND--GMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 282 ~~~d~--~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+. ++ ..+|+++.|+|||||++++..+.
T Consensus 159 ~~-~~~~~~~l~~~~~~LkpgG~l~i~~~~ 187 (241)
T 2ex4_A 159 LT-DQHLAEFLRRCKGSLRPNGIIVIKDNM 187 (241)
T ss_dssp SC-HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CC-HHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 76 43 48999999999999999997643
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-13 Score=119.67 Aligned_cols=95 Identities=16% Similarity=0.271 Sum_probs=77.4
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEeccccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
.+|||+|||+|.++..+++. .++++|+++ .+++.++++ .+.+.+..++ +++++++||+|++..+++++.
T Consensus 19 ~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~-~~~v~~~~~d--~~~~~~~~D~v~~~~~l~~~~- 89 (170)
T 3i9f_A 19 GVIVDYGCGNGFYCKYLLEFATKLYCIDINV-----IALKEVKEK-FDSVITLSDP--KEIPDNSVDFILFANSFHDMD- 89 (170)
T ss_dssp EEEEEETCTTCTTHHHHHTTEEEEEEECSCH-----HHHHHHHHH-CTTSEEESSG--GGSCTTCEEEEEEESCSTTCS-
T ss_pred CeEEEECCCCCHHHHHHHhhcCeEEEEeCCH-----HHHHHHHHh-CCCcEEEeCC--CCCCCCceEEEEEccchhccc-
Confidence 38999999999999999987 677886654 456666665 3455556555 788899999999999997775
Q ss_pred ChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 285 NDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 285 d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+...+++++.|+|||||++++.....
T Consensus 90 ~~~~~l~~~~~~L~pgG~l~~~~~~~ 115 (170)
T 3i9f_A 90 DKQHVISEVKRILKDDGRVIIIDWRK 115 (170)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred CHHHHHHHHHHhcCCCCEEEEEEcCc
Confidence 88999999999999999999986433
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.42 E-value=5.7e-13 Score=124.77 Aligned_cols=109 Identities=24% Similarity=0.371 Sum_probs=83.1
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCc
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRA 269 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~s 269 (392)
.+.+.+.++ .+ .+|||||||+|.++..++++ .++++|+++ .+++.++++...+ +...+...+|+++++
T Consensus 45 ~~~l~~~~~--~~--~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~l~~a~~~~~~~-~~~~d~~~~~~~~~~ 114 (260)
T 2avn_A 45 GSFLEEYLK--NP--CRVLDLGGGTGKWSLFLQERGFEVVLVDPSK-----EMLEVAREKGVKN-VVEAKAEDLPFPSGA 114 (260)
T ss_dssp HHHHHHHCC--SC--CEEEEETCTTCHHHHHHHTTTCEEEEEESCH-----HHHHHHHHHTCSC-EEECCTTSCCSCTTC
T ss_pred HHHHHHhcC--CC--CeEEEeCCCcCHHHHHHHHcCCeEEEEeCCH-----HHHHHHHhhcCCC-EEECcHHHCCCCCCC
Confidence 344444444 33 38999999999999999887 678887765 4555666554333 334444478888999
Q ss_pred cceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 270 FDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 270 FDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
||+|++..++.|+..+...+|+++.|+|||||++++..+..
T Consensus 115 fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 115 FEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp EEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred EEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 99999988788886678999999999999999999987654
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.1e-13 Score=118.95 Aligned_cols=96 Identities=25% Similarity=0.328 Sum_probs=77.1
Q ss_pred ceEEEECCcCchHHHHHhhC-CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK-NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
.+|||+|||+|.++..+ .. .++++|+++ .+++.++++. +.+.++..+. .+|+++++||+|++..+++|+.
T Consensus 38 ~~vLdiG~G~G~~~~~l-~~~~v~~vD~s~-----~~~~~a~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~- 109 (211)
T 2gs9_A 38 ESLLEVGAGTGYWLRRL-PYPQKVGVEPSE-----AMLAVGRRRA-PEATWVRAWGEALPFPGESFDVVLLFTTLEFVE- 109 (211)
T ss_dssp SEEEEETCTTCHHHHHC-CCSEEEEECCCH-----HHHHHHHHHC-TTSEEECCCTTSCCSCSSCEEEEEEESCTTTCS-
T ss_pred CeEEEECCCCCHhHHhC-CCCeEEEEeCCH-----HHHHHHHHhC-CCcEEEEcccccCCCCCCcEEEEEEcChhhhcC-
Confidence 48999999999999988 44 788887755 4555666554 3334455554 7889899999999999987776
Q ss_pred ChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 285 NDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 285 d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++..+++++.|+|||||+++++.+..
T Consensus 110 ~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 110 DVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 88999999999999999999987655
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.7e-13 Score=122.95 Aligned_cols=109 Identities=15% Similarity=0.186 Sum_probs=83.1
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
....+++.+....+ .+|||||||+|.++..++++ .++++|+++. +++.++++. +.+.+..++. .++
T Consensus 21 ~~~~l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~-----~~~~a~~~~-~~~~~~~~d~~~~~- 91 (259)
T 2p35_A 21 PARDLLAQVPLERV--LNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDD-----MLEKAADRL-PNTNFGKADLATWK- 91 (259)
T ss_dssp HHHHHHTTCCCSCC--SSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHH-----HHHHHHHHS-TTSEEEECCTTTCC-
T ss_pred HHHHHHHhcCCCCC--CEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHH-----HHHHHHHhC-CCcEEEECChhhcC-
Confidence 44556666654444 38999999999999988865 7899987654 555555553 3344445554 777
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
++++||+|++..+++++. +...+|.++.|+|||||++++..+.
T Consensus 92 ~~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 92 PAQKADLLYANAVFQWVP-DHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp CSSCEEEEEEESCGGGST-THHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred ccCCcCEEEEeCchhhCC-CHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 789999999999886664 8899999999999999999998754
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.7e-13 Score=127.67 Aligned_cols=102 Identities=11% Similarity=0.000 Sum_probs=71.6
Q ss_pred cceEEEECCcCchHHHH----HhhC--Cc----EEEeCCccChHHHHHHHHHHcCCCcEEEE--eccc-cC------CCC
Q 036725 206 VRTALDTGCGVASWGAY----LFKK--NV----ITMSFAPRDSHEAQVQFALERGVPAVIGV--LGTI-KL------PYP 266 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~----L~~~--~v----~~vd~s~~d~~~a~~~~a~~rg~~~~~~~--~~~~-~l------p~~ 266 (392)
..+|||||||+|.++.. ++.+ .+ +++|.++.++..+..+.+...+++++.+. ..+. .+ +++
T Consensus 53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 132 (292)
T 2aot_A 53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKE 132 (292)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTTC
T ss_pred CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccccC
Confidence 35899999999976543 3321 33 88877776665544433322355554332 2232 33 367
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+++||+|++..+++|+. |+..+|+++.|+|||||+|++..+
T Consensus 133 ~~~fD~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~~ 173 (292)
T 2aot_A 133 LQKWDFIHMIQMLYYVK-DIPATLKFFHSLLGTNAKMLIIVV 173 (292)
T ss_dssp CCCEEEEEEESCGGGCS-CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCceeEEEEeeeeeecC-CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 89999999999997765 899999999999999999999753
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-12 Score=120.91 Aligned_cols=102 Identities=15% Similarity=0.135 Sum_probs=74.6
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
+|||||||+|.++..|++. .++++|+++.++..+............+.+..++. .++ ++++||+|++..+++++.+
T Consensus 69 ~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~ 147 (235)
T 3lcc_A 69 RALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIEP 147 (235)
T ss_dssp EEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTTSCG
T ss_pred CEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhcCCH
Confidence 8999999999999999887 67888776654433322221111123466666666 555 5679999999988877653
Q ss_pred -ChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 285 -NDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 285 -d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+...+++++.++|||||++++...+.
T Consensus 148 ~~~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 148 EMRPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp GGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence 45789999999999999999976544
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=7.4e-13 Score=119.58 Aligned_cols=95 Identities=17% Similarity=0.225 Sum_probs=78.8
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
+|||||||+|.++..++++ .++++|+++ .+++.+++.+.+.+.++.++. .+ +++++||+|++..+++|+.
T Consensus 49 ~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~-----~~~~~a~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~- 121 (218)
T 3ou2_A 49 DVLELASGTGYWTRHLSGLADRVTALDGSA-----EMIAEAGRHGLDNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVP- 121 (218)
T ss_dssp EEEEESCTTSHHHHHHHHHSSEEEEEESCH-----HHHHHHGGGCCTTEEEEECCTTSC-CCSSCEEEEEEESCGGGSC-
T ss_pred eEEEECCCCCHHHHHHHhcCCeEEEEeCCH-----HHHHHHHhcCCCCeEEEecccccC-CCCCceeEEEEechhhcCC-
Confidence 8999999999999999886 678887654 466666667767777777776 55 7899999999999998776
Q ss_pred Ch--HHHHHHHHHhccCCeEEEEEcCC
Q 036725 285 ND--GMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 285 d~--~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
++ ..+|+++.++|||||++++..+.
T Consensus 122 ~~~~~~~l~~~~~~L~pgG~l~~~~~~ 148 (218)
T 3ou2_A 122 DDRFEAFWESVRSAVAPGGVVEFVDVT 148 (218)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 44 78999999999999999998643
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.3e-12 Score=124.14 Aligned_cols=115 Identities=16% Similarity=0.188 Sum_probs=84.9
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL 263 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l 263 (392)
.+++.+.+.+.... ...+|||||||+|.++..+++. .++++|+++.++..+.. .+...+. ++.+..++. .+
T Consensus 8 ~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~-~v~~~~~d~~~~ 84 (284)
T 3gu3_A 8 DYVSFLVNTVWKIT-KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARE-LFRLLPY-DSEFLEGDATEI 84 (284)
T ss_dssp HHHHHHHHTTSCCC-SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHH-HHHSSSS-EEEEEESCTTTC
T ss_pred HHHHHHHHHHhccC-CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHhcCC-ceEEEEcchhhc
Confidence 45566665553222 2248999999999999999875 68899887754444332 2222332 555666665 77
Q ss_pred CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 264 PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
++ +++||+|++..+++++. +...+++++.|+|||||++++..+.
T Consensus 85 ~~-~~~fD~v~~~~~l~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 85 EL-NDKYDIAICHAFLLHMT-TPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CC-SSCEEEEEEESCGGGCS-SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred Cc-CCCeeEEEECChhhcCC-CHHHHHHHHHHHcCCCCEEEEEecc
Confidence 77 56999999999887765 8899999999999999999998876
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.40 E-value=7.9e-13 Score=120.30 Aligned_cols=115 Identities=20% Similarity=0.304 Sum_probs=82.7
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
+.+.+.+.+.++. + .+|||+|||+|.++..++++ .++++|+++..+..+... +...+ +.+.++.++. .+++
T Consensus 26 ~~~~~~l~~~~~~--~--~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~-~~~~~~~~d~~~~~~ 99 (227)
T 1ve3_A 26 ETLEPLLMKYMKK--R--GKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREY-AKSRE-SNVEFIVGDARKLSF 99 (227)
T ss_dssp HHHHHHHHHSCCS--C--CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTT-CCCEEEECCTTSCCS
T ss_pred HHHHHHHHHhcCC--C--CeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHH-HHhcC-CCceEEECchhcCCC
Confidence 4455555555542 2 38999999999999999887 789998877655544332 23334 3344455554 7788
Q ss_pred CCCccceEEeccccccc-ccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 266 PSRAFDMAHCSRCLIPW-SANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~-~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
++++||+|++..+++.+ ..+...++.++.++|||||++++..+.
T Consensus 100 ~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 100 EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 88999999999874322 235678999999999999999998754
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=126.07 Aligned_cols=116 Identities=14% Similarity=0.183 Sum_probs=85.8
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~l 263 (392)
...++.+++.+...++. +|||||||+|.++..+++. .++++|+++.++..+.. .+.+.++ +.+.+...+. .+
T Consensus 76 ~~~~~~~~~~~~~~~~~--~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~ 152 (318)
T 2fk8_A 76 YAKVDLNLDKLDLKPGM--TLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQ-VLASIDTNRSRQVLLQGWEDF 152 (318)
T ss_dssp HHHHHHHHTTSCCCTTC--EEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHTSCCSSCEEEEESCGGGC
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHH-HHHhcCCCCceEEEECChHHC
Confidence 44667777777655544 8999999999999999875 68889887654444332 2233344 3355555555 55
Q ss_pred CCCCCccceEEecccccccc-cChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 264 PYPSRAFDMAHCSRCLIPWS-ANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~-~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
| ++||+|++..+++|+. ++...+++++.|+|||||++++..+..
T Consensus 153 ~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 153 A---EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS 197 (318)
T ss_dssp C---CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred C---CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 4 7899999999998875 367899999999999999999976543
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-12 Score=118.90 Aligned_cols=108 Identities=22% Similarity=0.362 Sum_probs=83.4
Q ss_pred HHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCCCCCC
Q 036725 194 ELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLPYPSR 268 (392)
Q Consensus 194 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp~~d~ 268 (392)
.+.+.++...+ .+|||||||+|.++..++++ .++++|+++ .+++.++++.. ..+.+...+. .++++++
T Consensus 34 ~l~~~~~~~~~--~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~-----~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~ 106 (243)
T 3bkw_A 34 ALRAMLPEVGG--LRIVDLGCGFGWFCRWAHEHGASYVLGLDLSE-----KMLARARAAGPDTGITYERADLDKLHLPQD 106 (243)
T ss_dssp HHHHHSCCCTT--CEEEEETCTTCHHHHHHHHTTCSEEEEEESCH-----HHHHHHHHTSCSSSEEEEECCGGGCCCCTT
T ss_pred HHHHhccccCC--CEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCH-----HHHHHHHHhcccCCceEEEcChhhccCCCC
Confidence 45555654344 38999999999999999886 578887654 46666666542 2355555555 7888899
Q ss_pred ccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 269 AFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+||+|++..+++++. +...+|+++.++|||||+++++.+.
T Consensus 107 ~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 107 SFDLAYSSLALHYVE-DVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp CEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CceEEEEeccccccc-hHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 999999999887775 8899999999999999999998754
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.6e-13 Score=121.41 Aligned_cols=114 Identities=16% Similarity=0.242 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC--CCcEEEEeccc
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG--VPAVIGVLGTI 261 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg--~~~~~~~~~~~ 261 (392)
.....+.+.+.+.... ...+|||||||+|.++..+++. .++++|+++. +++.++++. .+.+.++.++.
T Consensus 28 ~~~~~~~~~~~~~~~~-~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~d~ 101 (234)
T 3dtn_A 28 FDDFYGVSVSIASVDT-ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEK-----MLEIAKNRFRGNLKVKYIEADY 101 (234)
T ss_dssp HHHHHHHHHHTCCCSC-SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHH-----HHHHHHHHTCSCTTEEEEESCT
T ss_pred HHHHHHHHHHHhhcCC-CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHH-----HHHHHHHhhccCCCEEEEeCch
Confidence 3455567777776322 2348999999999999999876 6788877654 444555442 12555566665
Q ss_pred -cCCCCCCccceEEecccccccccChH--HHHHHHHHhccCCeEEEEEcCC
Q 036725 262 -KLPYPSRAFDMAHCSRCLIPWSANDG--MYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 262 -~lp~~d~sFDlV~~~~~l~~~~~d~~--~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
.++++ ++||+|++..+++++. +.. .+|+++.|+|||||++++..+.
T Consensus 102 ~~~~~~-~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~LkpgG~l~~~~~~ 150 (234)
T 3dtn_A 102 SKYDFE-EKYDMVVSALSIHHLE-DEDKKELYKRSYSILKESGIFINADLV 150 (234)
T ss_dssp TTCCCC-SCEEEEEEESCGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hccCCC-CCceEEEEeCccccCC-HHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 77776 8999999999998775 443 6999999999999999997643
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=122.92 Aligned_cols=99 Identities=16% Similarity=0.146 Sum_probs=72.2
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHH---------H-------cCCCcEEEEeccc-cCCCCC-
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFAL---------E-------RGVPAVIGVLGTI-KLPYPS- 267 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~---------~-------rg~~~~~~~~~~~-~lp~~d- 267 (392)
+|||+|||+|..+..|+++ .|+|+|+++.++..+..+... . .....+.++.++. .+++++
T Consensus 71 ~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~~~~ 150 (252)
T 2gb4_A 71 RVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANI 150 (252)
T ss_dssp EEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGGGCC
T ss_pred eEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCcccC
Confidence 8999999999999999987 688887776654443221110 0 0113455566665 777764
Q ss_pred CccceEEecccccccccC-hHHHHHHHHHhccCCeEEEEE
Q 036725 268 RAFDMAHCSRCLIPWSAN-DGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d-~~~~L~ei~RvLkPGG~lvl~ 306 (392)
++||+|++..+++++..+ ...+++++.|+|||||+|++.
T Consensus 151 ~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~ 190 (252)
T 2gb4_A 151 GKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA 190 (252)
T ss_dssp CCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 899999998888776533 368999999999999999754
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.38 E-value=9.7e-13 Score=120.89 Aligned_cols=119 Identities=18% Similarity=0.240 Sum_probs=83.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
+...+.+.+.+........+|||+|||+|.++..+++. .++++|+++.++..+.... ...+. .+.+...+. .+++
T Consensus 21 ~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~-~~~~~-~~~~~~~d~~~~~~ 98 (246)
T 1y8c_A 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKF-RSQGL-KPRLACQDISNLNI 98 (246)
T ss_dssp HHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHH-HHTTC-CCEEECCCGGGCCC
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHH-hhcCC-CeEEEecccccCCc
Confidence 34444455544332112348999999999999999887 6888988776555544332 23343 334444554 7777
Q ss_pred CCCccceEEecc-cccccc--cChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 266 PSRAFDMAHCSR-CLIPWS--ANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 266 ~d~sFDlV~~~~-~l~~~~--~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+ ++||+|++.. +++|+. ++...+|+++.++|||||+++++.+..
T Consensus 99 ~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (246)
T 1y8c_A 99 N-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp S-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred c-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence 6 8999999998 887773 356899999999999999999976543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-12 Score=116.04 Aligned_cols=120 Identities=15% Similarity=0.112 Sum_probs=84.7
Q ss_pred HHHHHHHHHhhCCC---CCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc
Q 036725 188 ADAYIEELASVIPM---DSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI 261 (392)
Q Consensus 188 ~~~~i~~l~~~l~~---~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~ 261 (392)
.+...+.+.+.+.. ..+ .+|||+|||+|.++..++++ .|+++|+++.++..+.. .+...+++.+.++.++.
T Consensus 26 ~~~~~~~l~~~l~~~~~~~~--~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~v~~~~~d~ 102 (189)
T 3p9n_A 26 TDRVRESLFNIVTARRDLTG--LAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIAR-NIEALGLSGATLRRGAV 102 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCTT--CEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHH-HHHHHTCSCEEEEESCH
T ss_pred cHHHHHHHHHHHHhccCCCC--CEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHH-HHHHcCCCceEEEEccH
Confidence 34444444444421 233 38999999999999977765 58999998866655444 34444556666777765
Q ss_pred -cCC--CCCCccceEEecccccccccChHHHHHHHHH--hccCCeEEEEEcCCC
Q 036725 262 -KLP--YPSRAFDMAHCSRCLIPWSANDGMYMMEIDR--VLRPGGYWVLSGPLI 310 (392)
Q Consensus 262 -~lp--~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~R--vLkPGG~lvl~~p~~ 310 (392)
.++ +++++||+|+++..+++..++...++.++.+ +|+|||++++..+..
T Consensus 103 ~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~ 156 (189)
T 3p9n_A 103 AAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATT 156 (189)
T ss_dssp HHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred HHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence 432 4578999999987664433466899999999 999999999976443
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=118.62 Aligned_cols=109 Identities=23% Similarity=0.318 Sum_probs=79.9
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc-CCCcEEEEeccccCCCC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKLPYP 266 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r-g~~~~~~~~~~~~lp~~ 266 (392)
..+..++..++ ++ .+|||||||+|.++..++++ .++++|+++. +++.++++ ++.. ...+...++ +
T Consensus 32 ~~~~~~~~~~~--~~--~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~--~~~d~~~~~-~ 99 (211)
T 3e23_A 32 ATLTKFLGELP--AG--AKILELGCGAGYQAEAMLAAGFDVDATDGSPE-----LAAEASRRLGRPV--RTMLFHQLD-A 99 (211)
T ss_dssp HHHHHHHTTSC--TT--CEEEESSCTTSHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHHTSCC--EECCGGGCC-C
T ss_pred HHHHHHHHhcC--CC--CcEEEECCCCCHHHHHHHHcCCeEEEECCCHH-----HHHHHHHhcCCce--EEeeeccCC-C
Confidence 34555555544 23 38999999999999999987 6888877664 44445444 3322 233333677 7
Q ss_pred CCccceEEeccccccccc-ChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 267 SRAFDMAHCSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+++||+|++..+++++.. +...+|+++.|+|||||+++++.+..
T Consensus 100 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 144 (211)
T 3e23_A 100 IDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSG 144 (211)
T ss_dssp CSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 899999999999987752 44789999999999999999986544
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=124.02 Aligned_cols=106 Identities=17% Similarity=0.204 Sum_probs=79.2
Q ss_pred HHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccc
Q 036725 195 LASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFD 271 (392)
Q Consensus 195 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFD 271 (392)
+.+.+....+ .+|||||||+|.++..+++. .++++|+++. +++.++++. +.+.+..++. .+|+ +++||
T Consensus 49 l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~-----~~~~a~~~~-~~~~~~~~d~~~~~~-~~~fD 119 (279)
T 3ccf_A 49 LLQLLNPQPG--EFILDLGCGTGQLTEKIAQSGAEVLGTDNAAT-----MIEKARQNY-PHLHFDVADARNFRV-DKPLD 119 (279)
T ss_dssp HHHHHCCCTT--CEEEEETCTTSHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHC-TTSCEEECCTTTCCC-SSCEE
T ss_pred HHHHhCCCCC--CEEEEecCCCCHHHHHHHhCCCeEEEEECCHH-----HHHHHHhhC-CCCEEEECChhhCCc-CCCcC
Confidence 3444443333 38999999999999999876 6888877654 555555554 3333344444 7787 68999
Q ss_pred eEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 272 MAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 272 lV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+|++..+++++. ++..+|.++.|+|||||++++..+..
T Consensus 120 ~v~~~~~l~~~~-d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 120 AVFSNAMLHWVK-EPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp EEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred EEEEcchhhhCc-CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 999999886655 88999999999999999999987554
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=7.1e-13 Score=122.96 Aligned_cols=112 Identities=18% Similarity=0.184 Sum_probs=76.8
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc---c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI---K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~---~ 262 (392)
..+++.+++.+.. .| .+|||||||+|..+..+++. .++++|+++.++..+.. .+...+ ..+.++.++. .
T Consensus 47 ~~~m~~~a~~~~~-~G--~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~-~~~~~~-~~~~~~~~~a~~~~ 121 (236)
T 3orh_A 47 TPYMHALAAAASS-KG--GRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQT-HKVIPLKGLWEDVA 121 (236)
T ss_dssp HHHHHHHHHHHTT-TC--EEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHH-HGGGCS-SEEEEEESCHHHHG
T ss_pred HHHHHHHHHhhcc-CC--CeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHH-HHhhCC-CceEEEeehHHhhc
Confidence 3466666666553 23 38999999999999999886 68888887654333222 222333 3444455543 4
Q ss_pred CCCCCCccceEEec-----ccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 263 LPYPSRAFDMAHCS-----RCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 263 lp~~d~sFDlV~~~-----~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.++++++||.|+.. ..+.|.. +...++.|+.|+|||||+|++.
T Consensus 122 ~~~~~~~FD~i~~D~~~~~~~~~~~~-~~~~~~~e~~rvLkPGG~l~f~ 169 (236)
T 3orh_A 122 PTLPDGHFDGILYDTYPLSEETWHTH-QFNFIKNHAFRLLKPGGVLTYC 169 (236)
T ss_dssp GGSCTTCEEEEEECCCCCBGGGTTTH-HHHHHHHTHHHHEEEEEEEEEC
T ss_pred ccccccCCceEEEeeeecccchhhhc-chhhhhhhhhheeCCCCEEEEE
Confidence 46889999999753 2333443 6689999999999999999885
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-12 Score=115.68 Aligned_cols=100 Identities=15% Similarity=0.087 Sum_probs=72.8
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC-CCCCccceEEeccccccc-
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP-YPSRAFDMAHCSRCLIPW- 282 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp-~~d~sFDlV~~~~~l~~~- 282 (392)
+|||+|||+|.++..|+++ .|+++|+++.++..+.. .+.+.+++++.++.++. .++ +.+++||+|+++....+.
T Consensus 25 ~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~-~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~~~~~ 103 (185)
T 3mti_A 25 IVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQ-RLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGYLPSA 103 (185)
T ss_dssp EEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHH-HHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-----
T ss_pred EEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCCCCCc
Confidence 8999999999999999986 79999998876665544 33444556666666655 432 557899999987332221
Q ss_pred -------ccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 283 -------SANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 283 -------~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
..+...++.++.|+|||||++++...
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 136 (185)
T 3mti_A 104 DKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY 136 (185)
T ss_dssp ------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred chhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence 12335789999999999999999753
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-12 Score=125.20 Aligned_cols=103 Identities=10% Similarity=0.015 Sum_probs=72.9
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC------cEEEEeccc---------cCCCCCC
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP------AVIGVLGTI---------KLPYPSR 268 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~------~~~~~~~~~---------~lp~~d~ 268 (392)
.+|||||||+|..+..++.. .|+|+|+++.++..+..+.. +.+.. .+.+...+. ..+++++
T Consensus 50 ~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~-~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~~ 128 (302)
T 2vdw_A 50 RKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYN-KLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFG 128 (302)
T ss_dssp CEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHH-HHCC----CCCEEEEEECCTTSSSHHHHHHTTCCSS
T ss_pred CeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHH-hccccccccccccchhhhhcccchhhhhhhccccCC
Confidence 48999999999766655543 68999998887777665433 33322 122323222 1246788
Q ss_pred ccceEEecccccccc--cChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 269 AFDMAHCSRCLIPWS--ANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 269 sFDlV~~~~~l~~~~--~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+||+|+|..++++.. ++...+|+++.|+|||||+|+++++..
T Consensus 129 ~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~ 172 (302)
T 2vdw_A 129 KFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG 172 (302)
T ss_dssp CEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 999999998875432 245799999999999999999988754
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-12 Score=118.77 Aligned_cols=98 Identities=24% Similarity=0.331 Sum_probs=76.6
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc----CC-----CcEEEEeccc-cCCCCCCccceEEe
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER----GV-----PAVIGVLGTI-KLPYPSRAFDMAHC 275 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r----g~-----~~~~~~~~~~-~lp~~d~sFDlV~~ 275 (392)
+|||+|||+|.++..++++ .++++|+++. +++.++++ ++ ..+.+...+. .+++++++||+|++
T Consensus 33 ~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 33 EILDIGCGSGKISLELASKGYSVTGIDINSE-----AIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred eEEEECCCCCHHHHHHHhCCCeEEEEECCHH-----HHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 8999999999999999987 7888877654 44444442 32 1344555554 78888999999999
Q ss_pred cccccccccChH---HHHHHHHHhccCCeEEEEEcCCCc
Q 036725 276 SRCLIPWSANDG---MYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 276 ~~~l~~~~~d~~---~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
..+++++. ++. .+++++.|+|||||++++..+...
T Consensus 108 ~~~l~~~~-~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (235)
T 3sm3_A 108 QAFLTSVP-DPKERSRIIKEVFRVLKPGAYLYLVEFGQN 145 (235)
T ss_dssp ESCGGGCC-CHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred cchhhcCC-CHHHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 99987776 665 899999999999999999875443
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-12 Score=116.75 Aligned_cols=115 Identities=23% Similarity=0.279 Sum_probs=82.3
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcC--CCcEEEEeccc
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERG--VPAVIGVLGTI 261 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg--~~~~~~~~~~~ 261 (392)
....+.+.+.+.+. .+ .+|||+|||+|.++..+++. .++++|+++.. ++.++++. .+.+.+...+.
T Consensus 28 ~~~~~~~~l~~~~~--~~--~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~-----~~~a~~~~~~~~~i~~~~~d~ 98 (215)
T 2pxx_A 28 DFSSFRALLEPELR--PE--DRILVLGCGNSALSYELFLGGFPNVTSVDYSSVV-----VAAMQACYAHVPQLRWETMDV 98 (215)
T ss_dssp CHHHHHHHHGGGCC--TT--CCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHH-----HHHHHHHTTTCTTCEEEECCT
T ss_pred CHHHHHHHHHHhcC--CC--CeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHH-----HHHHHHhcccCCCcEEEEcch
Confidence 34555566655552 33 38999999999999999886 68999887654 44444332 23444445554
Q ss_pred -cCCCCCCccceEEecccccccc--------------cChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 262 -KLPYPSRAFDMAHCSRCLIPWS--------------ANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 262 -~lp~~d~sFDlV~~~~~l~~~~--------------~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.+++++++||+|++..++.+.. .+...++.++.|+|||||++++..+..
T Consensus 99 ~~~~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 99 RKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp TSCCSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hcCCCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 7788889999999987664332 244789999999999999999987654
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-12 Score=121.74 Aligned_cols=108 Identities=17% Similarity=0.210 Sum_probs=79.4
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
+.+.+.+...++ .+ .+|||||||+|.++..|+++ .++++|+++ .+++.|+++.... .++.++. .+++
T Consensus 38 ~~~~~~l~~~~~--~~--~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~-----~~~~~a~~~~~~~-~~~~~d~~~~~~ 107 (263)
T 3pfg_A 38 ADLAALVRRHSP--KA--ASLLDVACGTGMHLRHLADSFGTVEGLELSA-----DMLAIARRRNPDA-VLHHGDMRDFSL 107 (263)
T ss_dssp HHHHHHHHHHCT--TC--CEEEEETCTTSHHHHHHTTTSSEEEEEESCH-----HHHHHHHHHCTTS-EEEECCTTTCCC
T ss_pred HHHHHHHHhhCC--CC--CcEEEeCCcCCHHHHHHHHcCCeEEEEECCH-----HHHHHHHhhCCCC-EEEECChHHCCc
Confidence 334444444443 22 38999999999999999987 688887755 4566666654333 4444444 7777
Q ss_pred CCCccceEEecc-cccccc--cChHHHHHHHHHhccCCeEEEEEc
Q 036725 266 PSRAFDMAHCSR-CLIPWS--ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 266 ~d~sFDlV~~~~-~l~~~~--~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+++||+|++.. +++++. ++...+|+++.++|||||+|++..
T Consensus 108 -~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~ 151 (263)
T 3pfg_A 108 -GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151 (263)
T ss_dssp -SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred -cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 78999999997 887764 245689999999999999999963
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.36 E-value=6.6e-12 Score=120.43 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=74.2
Q ss_pred ceEEEECCcCchHHHHHh--hC---CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-cCCCCCCccceEEecccc
Q 036725 207 RTALDTGCGVASWGAYLF--KK---NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~--~~---~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~lp~~d~sFDlV~~~~~l 279 (392)
.+|||||||+|.++..|+ .. .++++|+++.++..+.. .+...++. .+.++.++. .++++ ++||+|++..++
T Consensus 120 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~~ 197 (305)
T 3ocj_A 120 CVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATR-LAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGLN 197 (305)
T ss_dssp CEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHH-HHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSSG
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHH-HHHhcCCCCceEEEECchhcCCcc-CCeEEEEECChh
Confidence 389999999999999985 22 78999887754444332 22233433 256666665 88887 999999999888
Q ss_pred cccccChH---HHHHHHHHhccCCeEEEEEc
Q 036725 280 IPWSANDG---MYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 280 ~~~~~d~~---~~L~ei~RvLkPGG~lvl~~ 307 (392)
+|+. ++. .+++++.|+|||||+++++.
T Consensus 198 ~~~~-~~~~~~~~l~~~~~~LkpgG~l~i~~ 227 (305)
T 3ocj_A 198 IYEP-DDARVTELYRRFWQALKPGGALVTSF 227 (305)
T ss_dssp GGCC-CHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred hhcC-CHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence 7776 554 48999999999999999976
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-12 Score=115.92 Aligned_cols=99 Identities=18% Similarity=0.226 Sum_probs=73.9
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccccccc-
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWS- 283 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~- 283 (392)
+|||||||+|.++..+++. .++++|+++.++..+... +...+. .+.+...+. .+++++++||+|++... ++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~--~~~~ 107 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQL-AQEKGV-KITTVQSNLADFDIVADAWEGIVSIFC--HLPS 107 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHH-HHHHTC-CEEEECCBTTTBSCCTTTCSEEEEECC--CCCH
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHH-HHhcCC-ceEEEEcChhhcCCCcCCccEEEEEhh--cCCH
Confidence 8999999999999999987 688888776554443332 223344 444455554 77888899999999643 443
Q ss_pred cChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.+...++.++.++|||||++++..+..
T Consensus 108 ~~~~~~l~~~~~~L~pgG~l~~~~~~~ 134 (202)
T 2kw5_A 108 SLRQQLYPKVYQGLKPGGVFILEGFAP 134 (202)
T ss_dssp HHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 355899999999999999999987554
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-12 Score=116.98 Aligned_cols=101 Identities=19% Similarity=0.217 Sum_probs=74.6
Q ss_pred ceEEEECCcCchHH-HHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 207 RTALDTGCGVASWG-AYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 207 ~~VLDiGCG~G~~~-~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
.+|||+|||+|.++ ..++.. .++++|+++.++..+... +...+....+...+...+++++++||+|++..+++|+.
T Consensus 25 ~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 103 (209)
T 2p8j_A 25 KTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENF-SRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMR 103 (209)
T ss_dssp SEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHH-HHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGGSC
T ss_pred CEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-HHhcCCceEEEECchhhCCCCCCceeEEEEcChHHhCC
Confidence 38999999999874 444444 789999887666554433 23334333333444447888899999999998887774
Q ss_pred -cChHHHHHHHHHhccCCeEEEEEcC
Q 036725 284 -ANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 284 -~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++...++.++.|+|||||++++..+
T Consensus 104 ~~~~~~~l~~~~~~LkpgG~l~~~~~ 129 (209)
T 2p8j_A 104 KNDVKEAIDEIKRVLKPGGLACINFL 129 (209)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 3568999999999999999999764
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.8e-12 Score=132.98 Aligned_cols=123 Identities=17% Similarity=0.249 Sum_probs=91.9
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHH-----cCCCcEEE
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALE-----RGVPAVIG 256 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~-----rg~~~~~~ 256 (392)
.....++.+.+.+....+ .+|||||||+|.++..|+++ .|+++|+++.++..+..+.... .+.+.+.+
T Consensus 705 L~eqRle~LLelL~~~~g--~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVef 782 (950)
T 3htx_A 705 LSKQRVEYALKHIRESSA--STLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATL 782 (950)
T ss_dssp HHHHHHHHHHHHHHHSCC--SEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEE
T ss_pred HHHHHHHHHHHHhcccCC--CEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEE
Confidence 344556666666653333 38999999999999999876 4889988876665554433321 25566777
Q ss_pred Eeccc-cCCCCCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEcCCCch
Q 036725 257 VLGTI-KLPYPSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSGPLINW 312 (392)
Q Consensus 257 ~~~~~-~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p~~~~ 312 (392)
..++. .+++++++||+|++..+++|+.+.. ..++.++.|+|||| ++++++|...+
T Consensus 783 iqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ey 839 (950)
T 3htx_A 783 YDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEF 839 (950)
T ss_dssp EESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGG
T ss_pred EECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchh
Confidence 77776 8899999999999999998877322 36999999999999 88888877654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-12 Score=128.30 Aligned_cols=101 Identities=27% Similarity=0.258 Sum_probs=77.9
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHc----C---CCcEEEEeccc-cC------CCCC
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALER----G---VPAVIGVLGTI-KL------PYPS 267 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~r----g---~~~~~~~~~~~-~l------p~~d 267 (392)
.+|||||||+|.++..|++. .|+++|+++.++..+..+..... | .+++.++.++. .+ |+++
T Consensus 85 ~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~~ 164 (383)
T 4fsd_A 85 ATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPD 164 (383)
T ss_dssp CEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCCT
T ss_pred CEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCCC
Confidence 48999999999999888764 68999887765544433222210 3 24566666665 55 8999
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++||+|+++.+++++. +...+|+++.|+|||||+|+++.+
T Consensus 165 ~~fD~V~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~~ 204 (383)
T 4fsd_A 165 SSVDIVISNCVCNLST-NKLALFKEIHRVLRDGGELYFSDV 204 (383)
T ss_dssp TCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCEEEEEEccchhcCC-CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 9999999999887665 889999999999999999999753
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-12 Score=120.99 Aligned_cols=113 Identities=19% Similarity=0.217 Sum_probs=77.5
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC-
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL- 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l- 263 (392)
..+++.+...+.. .+ .+|||||||+|.++..|++. .++++|+++.++..+.. .+...+ ..+.++.++. .+
T Consensus 47 ~~~~~~l~~~~~~-~~--~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~-~~~~~~-~~v~~~~~d~~~~~ 121 (236)
T 1zx0_A 47 TPYMHALAAAASS-KG--GRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQT-HKVIPLKGLWEDVA 121 (236)
T ss_dssp HHHHHHHHHHHTT-TC--EEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHH-HGGGCS-SEEEEEESCHHHHG
T ss_pred HHHHHHHHhhcCC-CC--CeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHH-HHHhcC-CCeEEEecCHHHhh
Confidence 4455666655432 22 38999999999999999875 67888877654443332 222223 4556666665 66
Q ss_pred -CCCCCccceEEe-cccccccc----cChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 -PYPSRAFDMAHC-SRCLIPWS----ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 -p~~d~sFDlV~~-~~~l~~~~----~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
|+++++||+|++ ...+ +.. .+...++.++.|+|||||+|++..
T Consensus 122 ~~~~~~~fD~V~~d~~~~-~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 122 PTLPDGHFDGILYDTYPL-SEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp GGSCTTCEEEEEECCCCC-BGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccCCCceEEEEECCccc-chhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 899999999999 5443 211 123478999999999999999864
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.5e-12 Score=122.81 Aligned_cols=118 Identities=16% Similarity=0.163 Sum_probs=83.2
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC---CcEEEEeccc-c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV---PAVIGVLGTI-K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~---~~~~~~~~~~-~ 262 (392)
......+++.+....+ +|||||||+|.++..|+++ .|+++|+++.++..+..+ +...+. ..+.++.++. .
T Consensus 69 ~~~~~~~~~~~~~~~~---~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~v~~~~~d~~~ 144 (299)
T 3g2m_A 69 TSEAREFATRTGPVSG---PVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKR-LAEAPADVRDRCTLVQGDMSA 144 (299)
T ss_dssp HHHHHHHHHHHCCCCS---CEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHH-HHTSCHHHHTTEEEEECBTTB
T ss_pred cHHHHHHHHhhCCCCC---cEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHH-HhhcccccccceEEEeCchhc
Confidence 3445556666653333 7999999999999999987 789998877655443332 222221 3455555555 7
Q ss_pred CCCCCCccceEEeccccccccc--ChHHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSA--NDGMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~--d~~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
+++ +++||+|++.....++.+ +...+|+++.|+|||||+|++..+...
T Consensus 145 ~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 145 FAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp CCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred CCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 787 789999997655445553 247899999999999999999876653
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.4e-11 Score=108.25 Aligned_cols=113 Identities=14% Similarity=-0.027 Sum_probs=83.4
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l 263 (392)
+.....+++.+...++. +|||+|||+|.++..+++. .++++|+++..+..+.. .+...+++.+.++.++. ..
T Consensus 26 ~~i~~~~l~~l~~~~~~--~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~ 102 (204)
T 3e05_A 26 QEVRAVTLSKLRLQDDL--VMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRD-NLKKFVARNVTLVEAFAPEG 102 (204)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHH-HHHHHTCTTEEEEECCTTTT
T ss_pred HHHHHHHHHHcCCCCCC--EEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHhCCCcEEEEeCChhhh
Confidence 34445566666655554 8999999999999999875 58999988765555443 33444666677777766 33
Q ss_pred CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 264 PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
....++||+|++...+. +...++.++.++|||||++++..+
T Consensus 103 ~~~~~~~D~i~~~~~~~----~~~~~l~~~~~~LkpgG~l~~~~~ 143 (204)
T 3e05_A 103 LDDLPDPDRVFIGGSGG----MLEEIIDAVDRRLKSEGVIVLNAV 143 (204)
T ss_dssp CTTSCCCSEEEESCCTT----CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred hhcCCCCCEEEECCCCc----CHHHHHHHHHHhcCCCeEEEEEec
Confidence 33347899999986552 678999999999999999999754
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.33 E-value=7.2e-12 Score=114.10 Aligned_cols=105 Identities=20% Similarity=0.282 Sum_probs=80.1
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCcc
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAF 270 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sF 270 (392)
.++.+....+ + .+|||||||+|.++..++++ +++|+++ .+++.++++++ .+...+...+++++++|
T Consensus 38 ~~~~l~~~~~---~--~~vLDiG~G~G~~~~~l~~~--~~vD~s~-----~~~~~a~~~~~--~~~~~d~~~~~~~~~~f 103 (219)
T 1vlm_A 38 ELQAVKCLLP---E--GRGVEIGVGTGRFAVPLKIK--IGVEPSE-----RMAEIARKRGV--FVLKGTAENLPLKDESF 103 (219)
T ss_dssp HHHHHHHHCC---S--SCEEEETCTTSTTHHHHTCC--EEEESCH-----HHHHHHHHTTC--EEEECBTTBCCSCTTCE
T ss_pred HHHHHHHhCC---C--CcEEEeCCCCCHHHHHHHHH--hccCCCH-----HHHHHHHhcCC--EEEEcccccCCCCCCCe
Confidence 3444555544 2 38999999999999999887 8887755 45566666632 33333334788888999
Q ss_pred ceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 271 DMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 271 DlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
|+|++..+++++. ++..+|+++.++|||||+++++.+..
T Consensus 104 D~v~~~~~l~~~~-~~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 104 DFALMVTTICFVD-DPERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp EEEEEESCGGGSS-CHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred eEEEEcchHhhcc-CHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 9999999987765 88999999999999999999987554
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.2e-12 Score=114.25 Aligned_cols=95 Identities=18% Similarity=0.135 Sum_probs=70.5
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
.+|||+|||+|.++..+++. .++++|+++.++..+.. .+...+...+.+..++. +++.+++||+|+++..++
T Consensus 62 ~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~~d~-~~~~~~~fD~i~~~~~~~--- 136 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEE-NAALNGIYDIALQKTSL-LADVDGKFDLIVANILAE--- 136 (205)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCCCCEEEESST-TTTCCSCEEEEEEESCHH---
T ss_pred CEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEeccc-cccCCCCceEEEECCcHH---
Confidence 38999999999999999876 68999888765554433 33344555445555554 223468999999986553
Q ss_pred cChHHHHHHHHHhccCCeEEEEEc
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+++++.++|||||+++++.
T Consensus 137 -~~~~~l~~~~~~L~~gG~l~~~~ 159 (205)
T 3grz_A 137 -ILLDLIPQLDSHLNEDGQVIFSG 159 (205)
T ss_dssp -HHHHHGGGSGGGEEEEEEEEEEE
T ss_pred -HHHHHHHHHHHhcCCCCEEEEEe
Confidence 34688999999999999999974
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.32 E-value=9.5e-13 Score=123.85 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=71.3
Q ss_pred cceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHc-CC---------------------------CcE
Q 036725 206 VRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALER-GV---------------------------PAV 254 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~r-g~---------------------------~~~ 254 (392)
..+|||||||+|.++..++.. .|+++|+++.++..+......+. +. ..+
T Consensus 56 g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i 135 (263)
T 2a14_A 56 GDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAV 135 (263)
T ss_dssp EEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHE
T ss_pred CceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhh
Confidence 458999999999887776654 59999998877765543221110 00 012
Q ss_pred E-EEeccc-c-CCCC---CCccceEEecccccccc---cChHHHHHHHHHhccCCeEEEEEc
Q 036725 255 I-GVLGTI-K-LPYP---SRAFDMAHCSRCLIPWS---ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 255 ~-~~~~~~-~-lp~~---d~sFDlV~~~~~l~~~~---~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. ++..+. . .|++ .++||+|+++.++++.. ++...+++++.|+|||||+|++++
T Consensus 136 ~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~ 197 (263)
T 2a14_A 136 KRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTV 197 (263)
T ss_dssp EEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred heEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 1 344443 3 4543 67999999999997653 244689999999999999999986
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.1e-12 Score=121.21 Aligned_cols=102 Identities=22% Similarity=0.221 Sum_probs=76.6
Q ss_pred eEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCCC-CCCccceEEecccccc
Q 036725 208 TALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLPY-PSRAFDMAHCSRCLIP 281 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp~-~d~sFDlV~~~~~l~~ 281 (392)
+|||||||+|.++..+++. .++++|+++.++..+... ....+. ..+.+...+. .+|+ ++++||+|++..++++
T Consensus 67 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l~~ 145 (298)
T 1ri5_A 67 SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR-ARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHY 145 (298)
T ss_dssp EEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHH-HHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGGG
T ss_pred eEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHhcCCCccEEEEECCccccccCCCCCcCEEEECchhhh
Confidence 8999999999999888764 689998877655544332 222333 3455555555 7787 6889999999988855
Q ss_pred c---ccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 282 W---SANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 282 ~---~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
. ..+...+|.++.|+|||||++++..|..
T Consensus 146 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 146 AFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred hcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 2 2355789999999999999999987664
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-11 Score=116.00 Aligned_cols=146 Identities=11% Similarity=0.038 Sum_probs=90.1
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC-
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP- 264 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp- 264 (392)
..+..+++.+.... ..++|||||||+|.++..|+++ .|+++|+++.++..+ .+...........+. .++
T Consensus 71 ~Kl~~~l~~~~~~~-~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a-----~r~~~rv~~~~~~ni~~l~~ 144 (291)
T 3hp7_A 71 LKLEKALAVFNLSV-EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWK-----LRQDDRVRSMEQYNFRYAEP 144 (291)
T ss_dssp HHHHHHHHHTTCCC-TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHH-----HHTCTTEEEECSCCGGGCCG
T ss_pred HHHHHHHHhcCCCc-cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHH-----HHhCcccceecccCceecch
Confidence 34555556655432 2348999999999999999876 699999998877643 222212222222222 222
Q ss_pred --CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCchhh-hh---hhcccChHhHHHHHHHHHHHHH
Q 036725 265 --YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINWRT-NY---QAWQRPIKELEEEQRKIEEIAK 338 (392)
Q Consensus 265 --~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~~~~-~~---~~w~~~~e~l~~~~~~i~~l~~ 338 (392)
++..+||+|++..+++ +...+|.++.|+|||||.|++...|..... .. .+..+....-+.....+.+.+.
T Consensus 145 ~~l~~~~fD~v~~d~sf~----sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~~~~~~~~~v~~~~~ 220 (291)
T 3hp7_A 145 VDFTEGLPSFASIDVSFI----SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAV 220 (291)
T ss_dssp GGCTTCCCSEEEECCSSS----CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHHHHHHHHHHHHHHHH
T ss_pred hhCCCCCCCEEEEEeeHh----hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHHHHHHHHHHHHHHHH
Confidence 3455699999987664 346799999999999999999753321110 00 1222333333444455666667
Q ss_pred HcCceec
Q 036725 339 LLCWEKK 345 (392)
Q Consensus 339 ~l~W~~~ 345 (392)
...|...
T Consensus 221 ~~Gf~v~ 227 (291)
T 3hp7_A 221 DYGFSVK 227 (291)
T ss_dssp HTTEEEE
T ss_pred HCCCEEE
Confidence 7777643
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.8e-12 Score=114.99 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=75.7
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHH---HHHcCCCcEEEEeccc-cCCCCCCccceEEeccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQF---ALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRC 278 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~---a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~ 278 (392)
.+|||||||+|.++..|+++ .|+++|+++.++.....+. +...+.+++.++.++. .+|+++++ |.|+....
T Consensus 29 ~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~~~~ 107 (218)
T 3mq2_A 29 DVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHVLMP 107 (218)
T ss_dssp EEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEEESC
T ss_pred CEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEEEcc
Confidence 38999999999999999876 6999999988776533221 1234566777777766 88988877 88774321
Q ss_pred c---c-ccccChHHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 279 L---I-PWSANDGMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 279 l---~-~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
. + ++.+++..+++++.|+|||||.++++.....
T Consensus 108 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 144 (218)
T 3mq2_A 108 WGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHA 144 (218)
T ss_dssp CHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGG
T ss_pred chhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecccc
Confidence 1 1 1223568899999999999999999754443
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-12 Score=122.67 Aligned_cols=104 Identities=19% Similarity=0.223 Sum_probs=76.5
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHc------CCCcEEEEeccc-cCC----CC--CCcc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALER------GVPAVIGVLGTI-KLP----YP--SRAF 270 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~r------g~~~~~~~~~~~-~lp----~~--d~sF 270 (392)
.+|||+|||+|.++..+++. .++++|+++.++..+..+..... +...+.++..+. .++ ++ +++|
T Consensus 36 ~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~f 115 (313)
T 3bgv_A 36 ITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCF 115 (313)
T ss_dssp CEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTCCE
T ss_pred CEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCCCE
Confidence 38999999999999998865 68999988776655554433321 233455556555 554 53 4599
Q ss_pred ceEEecccccccccC---hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 271 DMAHCSRCLIPWSAN---DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 271 DlV~~~~~l~~~~~d---~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
|+|++..++++...+ ...+|.++.|+|||||+|+++.+..
T Consensus 116 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 158 (313)
T 3bgv_A 116 DICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 (313)
T ss_dssp EEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred EEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence 999999887543123 4689999999999999999987654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.31 E-value=3e-12 Score=116.17 Aligned_cols=106 Identities=23% Similarity=0.296 Sum_probs=81.0
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c--CCCCC
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K--LPYPS 267 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~--lp~~d 267 (392)
+.+.+.++ ..+ .+|||+|||+|.++..+++. .++++|+++ .+++.++++.. .+...+. . +++++
T Consensus 23 ~~l~~~~~-~~~--~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~-----~~~~~~~~~~~---~~~~~d~~~~~~~~~~ 91 (230)
T 3cc8_A 23 PNLLKHIK-KEW--KEVLDIGCSSGALGAAIKENGTRVSGIEAFP-----EAAEQAKEKLD---HVVLGDIETMDMPYEE 91 (230)
T ss_dssp HHHHTTCC-TTC--SEEEEETCTTSHHHHHHHTTTCEEEEEESSH-----HHHHHHHTTSS---EEEESCTTTCCCCSCT
T ss_pred HHHHHHhc-cCC--CcEEEeCCCCCHHHHHHHhcCCeEEEEeCCH-----HHHHHHHHhCC---cEEEcchhhcCCCCCC
Confidence 44555655 223 48999999999999999886 677776654 45666665543 2233333 3 77888
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++||+|++..+++|+. ++..++.++.++|||||+++++.|..
T Consensus 92 ~~fD~v~~~~~l~~~~-~~~~~l~~~~~~L~~gG~l~~~~~~~ 133 (230)
T 3cc8_A 92 EQFDCVIFGDVLEHLF-DPWAVIEKVKPYIKQNGVILASIPNV 133 (230)
T ss_dssp TCEEEEEEESCGGGSS-CHHHHHHHTGGGEEEEEEEEEEEECT
T ss_pred CccCEEEECChhhhcC-CHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 9999999999997776 88999999999999999999988665
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.9e-12 Score=116.68 Aligned_cols=114 Identities=16% Similarity=0.142 Sum_probs=83.8
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCcc------ChHHHHHHHHHHcCC-CcEEEE
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPR------DSHEAQVQFALERGV-PAVIGV 257 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~------d~~~a~~~~a~~rg~-~~~~~~ 257 (392)
.....+++.+...++. +|||||||+|.++..++++ .++++|+++. ++..++. .....++ +.+.+.
T Consensus 30 ~~~~~l~~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~-~~~~~~~~~~v~~~ 106 (275)
T 3bkx_A 30 AHRLAIAEAWQVKPGE--KILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWN-HLLAGPLGDRLTVH 106 (275)
T ss_dssp HHHHHHHHHHTCCTTC--EEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHH-HHHTSTTGGGEEEE
T ss_pred HHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHH-HHHhcCCCCceEEE
Confidence 3455666666554444 8999999999999988864 6899999885 5554443 3344444 456666
Q ss_pred ecc----ccCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 258 LGT----IKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 258 ~~~----~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..+ ..+|+++++||+|++..+++|+. ++..+++.+.++++|||++++..
T Consensus 107 ~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~-~~~~~~~~~~~l~~~gG~l~~~~ 159 (275)
T 3bkx_A 107 FNTNLSDDLGPIADQHFDRVVLAHSLWYFA-SANALALLFKNMAAVCDHVDVAE 159 (275)
T ss_dssp CSCCTTTCCGGGTTCCCSEEEEESCGGGSS-CHHHHHHHHHHHTTTCSEEEEEE
T ss_pred ECChhhhccCCCCCCCEEEEEEccchhhCC-CHHHHHHHHHHHhCCCCEEEEEE
Confidence 655 26678889999999999997776 67777777777777899999975
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.5e-12 Score=119.49 Aligned_cols=97 Identities=14% Similarity=0.182 Sum_probs=75.6
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
+|||+|||+|.++..|+++ .|+++|+++..+..+.. .+...++ .+.+...+. .+++ +++||+|++..+++++..
T Consensus 123 ~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~-~~~~~~~-~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~ 199 (286)
T 3m70_A 123 KVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNE-TKEKENL-NISTALYDINAANI-QENYDFIVSTVVFMFLNR 199 (286)
T ss_dssp EEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTC-CEEEEECCGGGCCC-CSCEEEEEECSSGGGSCG
T ss_pred cEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHH-HHHHcCC-ceEEEEeccccccc-cCCccEEEEccchhhCCH
Confidence 8999999999999999987 78999888765555443 3444555 445555555 6666 889999999999877752
Q ss_pred -ChHHHHHHHHHhccCCeEEEEEc
Q 036725 285 -NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 285 -d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+...++.++.++|||||++++..
T Consensus 200 ~~~~~~l~~~~~~LkpgG~l~i~~ 223 (286)
T 3m70_A 200 ERVPSIIKNMKEHTNVGGYNLIVA 223 (286)
T ss_dssp GGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 33689999999999999988754
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.2e-12 Score=117.29 Aligned_cols=101 Identities=15% Similarity=0.202 Sum_probs=77.7
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c-CC--CCCCccceEEecccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K-LP--YPSRAFDMAHCSRCL 279 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~-lp--~~d~sFDlV~~~~~l 279 (392)
+|||||||+|.++..|++. .|+|+|+++.++..+.. .+.+.++.++.++.++. . ++ +++++||.|++.+..
T Consensus 37 ~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~-~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~ 115 (218)
T 3dxy_A 37 VTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLA-SAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPD 115 (218)
T ss_dssp EEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHH-HHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESCC
T ss_pred eEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHH-HHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCCC
Confidence 8999999999999999875 59999998876665443 45566777787787776 4 33 789999999987443
Q ss_pred cccccCh--------HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 280 IPWSAND--------GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 280 ~~~~~d~--------~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+|.... ..++.++.|+|||||+|++.+...
T Consensus 116 -p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~ 153 (218)
T 3dxy_A 116 -PWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE 153 (218)
T ss_dssp -CCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred -CccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCH
Confidence 454322 259999999999999999986433
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=113.69 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=83.2
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPS 267 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d 267 (392)
..+.+.+.+.++ .+ .+|||+|||+|.++..+++. .++++|+++.++..+.... ...+....+...+...++++
T Consensus 21 ~~~~~~~~~~~~--~~--~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~- 94 (243)
T 3d2l_A 21 PEWVAWVLEQVE--PG--KRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKA-METNRHVDFWVQDMRELELP- 94 (243)
T ss_dssp HHHHHHHHHHSC--TT--CEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHH-HHTTCCCEEEECCGGGCCCS-
T ss_pred HHHHHHHHHHcC--CC--CeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhh-hhcCCceEEEEcChhhcCCC-
Confidence 456677777765 23 38999999999999999886 7889988876555544332 23343333333333477775
Q ss_pred CccceEEecc-cccccc--cChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 268 RAFDMAHCSR-CLIPWS--ANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 268 ~sFDlV~~~~-~l~~~~--~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++||+|++.. +++++. .+...+++++.++|||||+++++.+..
T Consensus 95 ~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 140 (243)
T 3d2l_A 95 EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSP 140 (243)
T ss_dssp SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence 8899999976 776663 244789999999999999999976543
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-11 Score=111.33 Aligned_cols=84 Identities=23% Similarity=0.335 Sum_probs=69.0
Q ss_pred eEEEECCcCchHHHHHhhCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccccChH
Q 036725 208 TALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDG 287 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~~ 287 (392)
+|||||||+|.++..++ ..++++|+++. .+ .+...+...+|+++++||+|++..+++ + .+..
T Consensus 70 ~vLDiG~G~G~~~~~l~-~~v~~~D~s~~-------------~~--~~~~~d~~~~~~~~~~fD~v~~~~~l~-~-~~~~ 131 (215)
T 2zfu_A 70 VVADFGCGDCRLASSIR-NPVHCFDLASL-------------DP--RVTVCDMAQVPLEDESVDVAVFCLSLM-G-TNIR 131 (215)
T ss_dssp CEEEETCTTCHHHHHCC-SCEEEEESSCS-------------ST--TEEESCTTSCSCCTTCEEEEEEESCCC-S-SCHH
T ss_pred eEEEECCcCCHHHHHhh-ccEEEEeCCCC-------------Cc--eEEEeccccCCCCCCCEeEEEEehhcc-c-cCHH
Confidence 89999999999999885 68999999875 11 122333347888899999999998884 4 5889
Q ss_pred HHHHHHHHhccCCeEEEEEcCC
Q 036725 288 MYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 288 ~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
.++.++.++|||||++++..+.
T Consensus 132 ~~l~~~~~~L~~gG~l~i~~~~ 153 (215)
T 2zfu_A 132 DFLEEANRVLKPGGLLKVAEVS 153 (215)
T ss_dssp HHHHHHHHHEEEEEEEEEEECG
T ss_pred HHHHHHHHhCCCCeEEEEEEcC
Confidence 9999999999999999998643
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.5e-12 Score=109.81 Aligned_cols=111 Identities=14% Similarity=0.091 Sum_probs=77.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc--
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-- 261 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-- 261 (392)
+.....+++.+....+ .+|||+|||+|.++..+++. .++++|+++.++..+.. .+.+.+.+ .+ .+.++.
T Consensus 11 ~~~~~~~~~~~~~~~~--~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~-~~~~d~~~ 86 (178)
T 3hm2_A 11 QHVRALAISALAPKPH--ETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS-NAINLGVSDRI-AVQQGAPR 86 (178)
T ss_dssp HHHHHHHHHHHCCCTT--EEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHH-HHHTTTCTTSE-EEECCTTG
T ss_pred HHHHHHHHHHhcccCC--CeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH-HHHHhCCCCCE-EEecchHh
Confidence 4455666666654444 38999999999999998876 68888887654443332 33344555 55 455554
Q ss_pred cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 262 KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 262 ~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.++..+++||+|++...+.+ ..+++++.++|||||++++...
T Consensus 87 ~~~~~~~~~D~i~~~~~~~~-----~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 87 AFDDVPDNPDVIFIGGGLTA-----PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp GGGGCCSCCSEEEECC-TTC-----TTHHHHHHHTCCTTCEEEEEEC
T ss_pred hhhccCCCCCEEEECCcccH-----HHHHHHHHHhcCCCCEEEEEee
Confidence 33333389999999887744 5689999999999999999764
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-11 Score=118.23 Aligned_cols=112 Identities=14% Similarity=0.084 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHH-hhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYL-FKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K 262 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L-~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~ 262 (392)
....++.-..++...++. +|||||||+|.+++.+ ++. .|+++|+++.++..+... +.+.|+..+.++.++. .
T Consensus 107 ~~~l~~~E~~la~l~~g~--rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~-~~~~gl~~v~~v~gDa~~ 183 (298)
T 3fpf_A 107 YLELLKNEAALGRFRRGE--RAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKV-IEGLGVDGVNVITGDETV 183 (298)
T ss_dssp HHHHHHHHHHHTTCCTTC--EEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHH-HHHHTCCSEEEEESCGGG
T ss_pred HHHHHHHHHHHcCCCCcC--EEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHH-HHhcCCCCeEEEECchhh
Confidence 334444434455555554 9999999999776544 332 799999988766665543 3344556777777776 6
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+| +++||+|++... .++...+++++.|+|||||++++...
T Consensus 184 l~--d~~FDvV~~~a~----~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 184 ID--GLEFDVLMVAAL----AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp GG--GCCCSEEEECTT----CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CC--CCCcCEEEECCC----ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 55 789999998643 34778999999999999999999753
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-12 Score=124.47 Aligned_cols=104 Identities=23% Similarity=0.236 Sum_probs=72.7
Q ss_pred cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC-------------------------------
Q 036725 206 VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG------------------------------- 250 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg------------------------------- 250 (392)
..+|||||||+|.++..|+++ .|+++|+++.++..+.........
T Consensus 47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (292)
T 3g07_A 47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCF 126 (292)
T ss_dssp TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------------------
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence 348999999999999999875 788998876544443322111000
Q ss_pred -------------------------C-CcEEEEeccc-cC-----CCCCCccceEEecccccccc-----cChHHHHHHH
Q 036725 251 -------------------------V-PAVIGVLGTI-KL-----PYPSRAFDMAHCSRCLIPWS-----ANDGMYMMEI 293 (392)
Q Consensus 251 -------------------------~-~~~~~~~~~~-~l-----p~~d~sFDlV~~~~~l~~~~-----~d~~~~L~ei 293 (392)
. .++.+..++. .. ++.+++||+|+|..+++++. ++...+++++
T Consensus 127 p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~ 206 (292)
T 3g07_A 127 PASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRI 206 (292)
T ss_dssp ---------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHH
Confidence 0 2466666655 22 35789999999998874432 1446899999
Q ss_pred HHhccCCeEEEEEcCC
Q 036725 294 DRVLRPGGYWVLSGPL 309 (392)
Q Consensus 294 ~RvLkPGG~lvl~~p~ 309 (392)
.++|||||+|++...+
T Consensus 207 ~~~LkpGG~lil~~~~ 222 (292)
T 3g07_A 207 YRHLRPGGILVLEPQP 222 (292)
T ss_dssp HHHEEEEEEEEEECCC
T ss_pred HHHhCCCcEEEEecCC
Confidence 9999999999997543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-11 Score=113.75 Aligned_cols=115 Identities=18% Similarity=0.256 Sum_probs=78.4
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSR 268 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~ 268 (392)
++..++.......+ .+|||+|||+|.++..|+++ .++++|+++.++..+..+ +.+.+....+...+...++++ +
T Consensus 29 ~~~~~~~~~~~~~~--~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~-~~~~~~~v~~~~~d~~~~~~~-~ 104 (252)
T 1wzn_A 29 FVEEIFKEDAKREV--RRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRK-AKERNLKIEFLQGDVLEIAFK-N 104 (252)
T ss_dssp HHHHHHHHTCSSCC--CEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCCCEEEESCGGGCCCC-S
T ss_pred HHHHHHHHhcccCC--CEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH-HHhcCCceEEEECChhhcccC-C
Confidence 34444444432233 38999999999999999987 788998887666554432 333444434434333477764 6
Q ss_pred ccceEEecccccccc--cChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 269 AFDMAHCSRCLIPWS--ANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 269 sFDlV~~~~~l~~~~--~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+||+|++.....++. ++...+++++.++|||||++++..+.
T Consensus 105 ~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 105 EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (252)
T ss_dssp CEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence 899999864433332 24478999999999999999997654
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.5e-12 Score=115.52 Aligned_cols=96 Identities=19% Similarity=0.257 Sum_probs=72.2
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC---CCCC-CccceEEeccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL---PYPS-RAFDMAHCSRCLI 280 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l---p~~d-~sFDlV~~~~~l~ 280 (392)
.+|||||||+|.++..++++ .++++|+++ .+++.++++. .......+...+ ++.. ++||+|++..+++
T Consensus 54 ~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~ 127 (227)
T 3e8s_A 54 ERVLDLGCGEGWLLRALADRGIEAVGVDGDR-----TLVDAARAAG-AGEVHLASYAQLAEAKVPVGKDYDLICANFALL 127 (227)
T ss_dssp SEEEEETCTTCHHHHHHHTTTCEEEEEESCH-----HHHHHHHHTC-SSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC
T ss_pred CEEEEeCCCCCHHHHHHHHCCCEEEEEcCCH-----HHHHHHHHhc-ccccchhhHHhhcccccccCCCccEEEECchhh
Confidence 38999999999999999987 678887654 4666666663 222222222233 5444 4599999998886
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 281 PWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 281 ~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
..+...+++++.++|||||++++..+..
T Consensus 128 --~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 128 --HQDIIELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp --SSCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred --hhhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 4588999999999999999999987544
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=111.16 Aligned_cols=111 Identities=14% Similarity=0.063 Sum_probs=83.0
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
......+.+.+...++. +|||+|||+|.++..+++. .++++|+++..+..+.. .....+.+++.+..++. ..+.
T Consensus 63 ~~~~~~~~~~l~~~~~~--~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~~ 139 (210)
T 3lbf_A 63 PYMVARMTELLELTPQS--RVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARR-RLKNLDLHNVSTRHGDGWQGWQ 139 (210)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEESCGGGCCG
T ss_pred HHHHHHHHHhcCCCCCC--EEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHH-HHHHcCCCceEEEECCcccCCc
Confidence 34556666777655544 8999999999999999886 78999887755544333 33344666677777766 5555
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
++++||+|++..+++++. .++.++|||||+++++.+.
T Consensus 140 ~~~~~D~i~~~~~~~~~~-------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 140 ARAPFDAIIVTAAPPEIP-------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GGCCEEEEEESSBCSSCC-------THHHHTEEEEEEEEEEECS
T ss_pred cCCCccEEEEccchhhhh-------HHHHHhcccCcEEEEEEcC
Confidence 578999999998886665 3789999999999998765
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-11 Score=121.21 Aligned_cols=123 Identities=15% Similarity=0.062 Sum_probs=85.3
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP 264 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp 264 (392)
+.+.+++.+.+.+........+|||+|||+|.++..++++ .|+++|+++.++..+.. .+...++...+...+....+
T Consensus 215 ~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~-n~~~~~~~v~~~~~D~~~~~ 293 (381)
T 3dmg_A 215 ASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQK-GLEANALKAQALHSDVDEAL 293 (381)
T ss_dssp HHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHH-HHHHTTCCCEEEECSTTTTS
T ss_pred HHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHHcCCCeEEEEcchhhcc
Confidence 4445566665554311112338999999999999999987 78999887765555443 33445555444444444666
Q ss_pred CCCCccceEEeccccccc----ccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 265 YPSRAFDMAHCSRCLIPW----SANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~----~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.++++||+|+++..+++. ..+...++.++.++|||||+++++.+..
T Consensus 294 ~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 294 TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 667899999998777541 2244789999999999999999987544
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.5e-11 Score=106.11 Aligned_cols=98 Identities=21% Similarity=0.229 Sum_probs=73.3
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEec-ccccccc-
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCS-RCLIPWS- 283 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~-~~l~~~~- 283 (392)
+|||+|||+|.++..+++. .++++|+++ .+++.++++.....+...+...+++++++||+|++. .++++..
T Consensus 49 ~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~-----~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~ 123 (195)
T 3cgg_A 49 KILDAGCGQGRIGGYLSKQGHDVLGTDLDP-----ILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAE 123 (195)
T ss_dssp EEEEETCTTTHHHHHHHHTTCEEEEEESCH-----HHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCH
T ss_pred eEEEECCCCCHHHHHHHHCCCcEEEEcCCH-----HHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcCh
Confidence 8999999999999999887 678887655 455556555433333333334778888999999998 5665543
Q ss_pred cChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++...++.++.++|+|||++++..+..
T Consensus 124 ~~~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 124 DGREPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 234789999999999999999976543
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.28 E-value=5e-12 Score=119.30 Aligned_cols=112 Identities=16% Similarity=0.049 Sum_probs=78.5
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCc-EEEEeccccC--C-
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPA-VIGVLGTIKL--P- 264 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~~~~~l--p- 264 (392)
.++.+++.+...++. +|||||||+|.++..|+++ .|+++|+++. +++.|+++.... +.....+... +
T Consensus 33 ~~~~il~~l~l~~g~--~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~-----ml~~Ar~~~~~~~v~~~~~~~~~~~~~ 105 (261)
T 3iv6_A 33 DRENDIFLENIVPGS--TVAVIGASTRFLIEKALERGASVTVFDFSQR-----MCDDLAEALADRCVTIDLLDITAEIPK 105 (261)
T ss_dssp HHHHHHHTTTCCTTC--EEEEECTTCHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHHTSSSCCEEEECCTTSCCCG
T ss_pred HHHHHHHhcCCCCcC--EEEEEeCcchHHHHHHHhcCCEEEEEECCHH-----HHHHHHHHHHhccceeeeeeccccccc
Confidence 456666677655554 8999999999999999987 7888877654 555555543222 1112222222 1
Q ss_pred CCCCccceEEeccccccccc-ChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 265 YPSRAFDMAHCSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
..+++||+|+++.+++|+.. +...++.++.++| |||.++++.+..
T Consensus 106 ~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g 151 (261)
T 3iv6_A 106 ELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLG 151 (261)
T ss_dssp GGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred ccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence 12578999999999888753 3467999999999 999999986543
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.3e-11 Score=109.37 Aligned_cols=99 Identities=18% Similarity=0.217 Sum_probs=75.5
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC--CCCCccceEEeccccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP--YPSRAFDMAHCSRCLI 280 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp--~~d~sFDlV~~~~~l~ 280 (392)
+|||||||+|.++..+++. +++++|+++..+..+.. .+...+++++.++.++. .++ +++++||+|+++...
T Consensus 44 ~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~~- 121 (214)
T 1yzh_A 44 IHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALD-KVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD- 121 (214)
T ss_dssp EEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHH-HHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC-
T ss_pred eEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHH-HHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECCC-
Confidence 8999999999999998875 69999998766655443 34445666676777665 666 778899999988543
Q ss_pred cccc--------ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 281 PWSA--------NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 281 ~~~~--------d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+|.. ....++.++.++|||||.+++...
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 157 (214)
T 1yzh_A 122 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157 (214)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred CccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 3432 125799999999999999999753
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.7e-11 Score=110.40 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=75.4
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC--CCCCccceEEeccccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP--YPSRAFDMAHCSRCLI 280 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp--~~d~sFDlV~~~~~l~ 280 (392)
+|||||||+|.++..|++. +++++|+++.++..+.. .+.+.+++++.++.++. .++ +++++||.|++....
T Consensus 41 ~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~-~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~~- 118 (213)
T 2fca_A 41 IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQ-KVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD- 118 (213)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHH-HHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC-
T ss_pred eEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHH-HHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECCC-
Confidence 8999999999999999875 68999888765555433 34455677777777776 555 778999999876433
Q ss_pred ccccC--------hHHHHHHHHHhccCCeEEEEEcC
Q 036725 281 PWSAN--------DGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 281 ~~~~d--------~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+|... ...++.++.++|||||.|++.+.
T Consensus 119 p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td 154 (213)
T 2fca_A 119 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154 (213)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred CCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence 44321 26799999999999999999763
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.27 E-value=3.4e-12 Score=121.34 Aligned_cols=117 Identities=21% Similarity=0.196 Sum_probs=73.3
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhh---CCcEEEeCCccChHHHHHHHHH----------------HcCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFK---KNVITMSFAPRDSHEAQVQFAL----------------ERGV 251 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~---~~v~~vd~s~~d~~~a~~~~a~----------------~rg~ 251 (392)
.+..+.+.+........+|||||||+|.+...++. ..|+++|+++.++..+...... ..+.
T Consensus 57 ~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~ 136 (289)
T 2g72_A 57 KLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGK 136 (289)
T ss_dssp HHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCS
T ss_pred HHHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCc
Confidence 34445554432211234899999999996544443 2799998877655544331110 0110
Q ss_pred C-------------cEEEEeccc-c-CCC-----CCCccceEEecccccccc---cChHHHHHHHHHhccCCeEEEEEc
Q 036725 252 P-------------AVIGVLGTI-K-LPY-----PSRAFDMAHCSRCLIPWS---ANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 252 ~-------------~~~~~~~~~-~-lp~-----~d~sFDlV~~~~~l~~~~---~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. ...++..+. . +|+ ++++||+|+++.++++.. ++...+|+++.|+|||||+|++..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 137 GECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp CCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 0 022233333 3 554 456799999999986643 256899999999999999999974
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.27 E-value=4e-11 Score=108.60 Aligned_cols=109 Identities=15% Similarity=0.017 Sum_probs=78.8
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-cCCCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KLPYP 266 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~lp~~ 266 (392)
....+++.+....+. +|||+|||+|.++..++++ .|+++|+++.++..+.. .++..+++ ++.++.++. .....
T Consensus 43 ~~~~~l~~l~~~~~~--~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~-~~~~~g~~~~v~~~~~d~~~~~~~ 119 (204)
T 3njr_A 43 MRALTLAALAPRRGE--LLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQK-NIDTYGLSPRMRAVQGTAPAALAD 119 (204)
T ss_dssp HHHHHHHHHCCCTTC--EEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEESCTTGGGTT
T ss_pred HHHHHHHhcCCCCCC--EEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHH-HHHHcCCCCCEEEEeCchhhhccc
Confidence 334455555544444 8999999999999999886 78999888765554433 44455666 677777766 42223
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
..+||+|++...+ +.. ++.++.++|||||+++++..
T Consensus 120 ~~~~D~v~~~~~~-----~~~-~l~~~~~~LkpgG~lv~~~~ 155 (204)
T 3njr_A 120 LPLPEAVFIGGGG-----SQA-LYDRLWEWLAPGTRIVANAV 155 (204)
T ss_dssp SCCCSEEEECSCC-----CHH-HHHHHHHHSCTTCEEEEEEC
T ss_pred CCCCCEEEECCcc-----cHH-HHHHHHHhcCCCcEEEEEec
Confidence 4579999987533 455 99999999999999999864
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-10 Score=101.07 Aligned_cols=112 Identities=11% Similarity=0.083 Sum_probs=83.2
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYP 266 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~ 266 (392)
+...+.+.+.+....+. +|||+|||+|.++..+++. .++++|+++..+..+.. .+...+++.+.+..++...+++
T Consensus 21 ~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~d~~~~~~ 97 (183)
T 2yxd_A 21 EEIRAVSIGKLNLNKDD--VVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQ-NLAKFNIKNCQIIKGRAEDVLD 97 (183)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHH-HHHHTTCCSEEEEESCHHHHGG
T ss_pred HHHHHHHHHHcCCCCCC--EEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHH-HHHHcCCCcEEEEECCcccccc
Confidence 45566666666644443 8999999999999999875 78999888765544333 3344565666667776633667
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+++||+|++..+ .+...++.++.++ |||.+++..+..
T Consensus 98 ~~~~D~i~~~~~-----~~~~~~l~~~~~~--~gG~l~~~~~~~ 134 (183)
T 2yxd_A 98 KLEFNKAFIGGT-----KNIEKIIEILDKK--KINHIVANTIVL 134 (183)
T ss_dssp GCCCSEEEECSC-----SCHHHHHHHHHHT--TCCEEEEEESCH
T ss_pred CCCCcEEEECCc-----ccHHHHHHHHhhC--CCCEEEEEeccc
Confidence 789999999865 4778999999999 999999987533
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-11 Score=111.23 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=71.7
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecc-ccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSR-CLIPW 282 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~-~l~~~ 282 (392)
.+|||+|||+|.++..++++ .++++|+++. +++.++++. +.+.+..++. .+++ +++||+|+|.. +++|.
T Consensus 42 ~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~-----~~~~a~~~~-~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~~~ 114 (239)
T 3bxo_A 42 SSLLDVACGTGTHLEHFTKEFGDTAGLELSED-----MLTHARKRL-PDATLHQGDMRDFRL-GRKFSAVVSMFSSVGYL 114 (239)
T ss_dssp CEEEEETCTTSHHHHHHHHHHSEEEEEESCHH-----HHHHHHHHC-TTCEEEECCTTTCCC-SSCEEEEEECTTGGGGC
T ss_pred CeEEEecccCCHHHHHHHHhCCcEEEEeCCHH-----HHHHHHHhC-CCCEEEECCHHHccc-CCCCcEEEEcCchHhhc
Confidence 38999999999999999886 6888877654 555565554 3334444554 6776 78999999654 66555
Q ss_pred c--cChHHHHHHHHHhccCCeEEEEEcC
Q 036725 283 S--ANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 283 ~--~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
. ++...+|+++.++|||||+++++.+
T Consensus 115 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 142 (239)
T 3bxo_A 115 KTTEELGAAVASFAEHLEPGGVVVVEPW 142 (239)
T ss_dssp CSHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 3 3447899999999999999999753
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-11 Score=109.80 Aligned_cols=94 Identities=13% Similarity=0.080 Sum_probs=67.5
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c----CCCCCCccceEEecc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K----LPYPSRAFDMAHCSR 277 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~----lp~~d~sFDlV~~~~ 277 (392)
.+|||+|||+|.++..+++. .|+++|+++.++.. +.+.++++ .++..+.++. . .+++ ++||+|+++.
T Consensus 59 ~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~-~~~~a~~~--~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~~ 134 (210)
T 1nt2_A 59 ERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEK-LLELVRER--NNIIPLLFDASKPWKYSGIV-EKVDLIYQDI 134 (210)
T ss_dssp CEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHH-HHHHHHHC--SSEEEECSCTTCGGGTTTTC-CCEEEEEECC
T ss_pred CEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHH-HHHHHhcC--CCeEEEEcCCCCchhhcccc-cceeEEEEec
Confidence 38999999999999988763 68999998765433 44455544 3445555554 3 3454 8999999872
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 278 CLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 278 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. .......++.++.|+|||||+|+++.
T Consensus 135 -~--~~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 135 -A--QKNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp -C--STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -c--ChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 2 12233456999999999999999985
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=9.7e-12 Score=123.67 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=88.8
Q ss_pred CCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHH------HHHHcCC-
Q 036725 183 QFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQ------FALERGV- 251 (392)
Q Consensus 183 ~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~------~a~~rg~- 251 (392)
.|.......+..+++.+....+. +|||||||+|.++..++.. .++|+|+++.++..+... .++..|+
T Consensus 153 vYGEt~~~~i~~il~~l~l~~gd--~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~ 230 (438)
T 3uwp_A 153 VYGETSFDLVAQMIDEIKMTDDD--LFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK 230 (438)
T ss_dssp GGGGTHHHHHHHHHHHHCCCTTC--EEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC
T ss_pred ccCCCCHHHHHHHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34555667788888888766665 8999999999999888753 499999987555444332 1233454
Q ss_pred -CcEEEEeccc-cCCCCC--CccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 252 -PAVIGVLGTI-KLPYPS--RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 252 -~~~~~~~~~~-~lp~~d--~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
..+.++.++. .+|+++ .+||+|+++..+ +.++....|.++.|+|||||.|++.
T Consensus 231 ~~rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~--F~pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 231 HAEYTLERGDFLSEEWRERIANTSVIFVNNFA--FGPEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp CCEEEEEECCTTSHHHHHHHHTCSEEEECCTT--CCHHHHHHHHHHHTTSCTTCEEEES
T ss_pred CCCeEEEECcccCCccccccCCccEEEEcccc--cCchHHHHHHHHHHcCCCCcEEEEe
Confidence 5677777776 777654 479999997654 3347788899999999999999995
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4e-11 Score=117.28 Aligned_cols=112 Identities=14% Similarity=0.188 Sum_probs=81.5
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~l 263 (392)
..+.+.+.+.+...++. +|||||||+|.++..++++ .|+++|+++ ++..+ .+.++..+. +.+.++.++. .+
T Consensus 50 ~~~~~~i~~~~~~~~~~--~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a-~~~~~~~~~~~~i~~~~~d~~~~ 125 (340)
T 2fyt_A 50 ESYRDFIYQNPHIFKDK--VVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQA-MDIIRLNKLEDTITLIKGKIEEV 125 (340)
T ss_dssp HHHHHHHHHCGGGTTTC--EEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHH-HHHHHHTTCTTTEEEEESCTTTS
T ss_pred HHHHHHHHhhhhhcCCC--EEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHH-HHHHHHcCCCCcEEEEEeeHHHh
Confidence 34556666655443443 8999999999999999876 689999985 55443 344555565 5666666665 78
Q ss_pred CCCCCccceEEecccc--cccccChHHHHHHHHHhccCCeEEE
Q 036725 264 PYPSRAFDMAHCSRCL--IPWSANDGMYMMEIDRVLRPGGYWV 304 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l--~~~~~d~~~~L~ei~RvLkPGG~lv 304 (392)
++++++||+|++..+. .....+...++.++.|+|||||+++
T Consensus 126 ~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 126 HLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred cCCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 8888999999987532 1223355789999999999999998
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-11 Score=112.05 Aligned_cols=117 Identities=11% Similarity=0.031 Sum_probs=80.2
Q ss_pred HHHHHHHHhhCCCC-CCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC--CcEEEEeccc-
Q 036725 189 DAYIEELASVIPMD-SGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV--PAVIGVLGTI- 261 (392)
Q Consensus 189 ~~~i~~l~~~l~~~-~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~--~~~~~~~~~~- 261 (392)
+.+.+.+.+.+... .+ .+|||+|||+|.++..++.+ .|+++|+++.++..+.. .+...++ +.+.++.++.
T Consensus 38 ~~~~~~l~~~l~~~~~~--~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~-~~~~~~~~~~~v~~~~~d~~ 114 (201)
T 2ift_A 38 DRVKETLFNWLMPYIHQ--SECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKK-NLQTLKCSSEQAEVINQSSL 114 (201)
T ss_dssp CHHHHHHHHHHHHHHTT--CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHH-HHHHTTCCTTTEEEECSCHH
T ss_pred HHHHHHHHHHHHHhcCC--CeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHH-HHHHhCCCccceEEEECCHH
Confidence 34444444444321 23 38999999999999986665 58999888766555443 3344565 5667777765
Q ss_pred cC-C-CCCCc-cceEEecccccccccChHHHHHHH--HHhccCCeEEEEEcCCC
Q 036725 262 KL-P-YPSRA-FDMAHCSRCLIPWSANDGMYMMEI--DRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 262 ~l-p-~~d~s-FDlV~~~~~l~~~~~d~~~~L~ei--~RvLkPGG~lvl~~p~~ 310 (392)
.+ + +++++ ||+|++...+ + ..+...++.++ .|+|||||+++++.++.
T Consensus 115 ~~~~~~~~~~~fD~I~~~~~~-~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 115 DFLKQPQNQPHFDVVFLDPPF-H-FNLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp HHTTSCCSSCCEEEEEECCCS-S-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred HHHHhhccCCCCCEEEECCCC-C-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 33 3 24678 9999998664 3 23557888888 67899999999987554
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-11 Score=118.10 Aligned_cols=101 Identities=16% Similarity=0.185 Sum_probs=76.7
Q ss_pred cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccccCCCCCCccceEEeccccc
Q 036725 206 VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKLPYPSRAFDMAHCSRCLI 280 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~~lp~~d~sFDlV~~~~~l~ 280 (392)
..+|||||||+|.++..++++ .++++|+ +..+..+.. ...+.++ +.+.++.++...++|. +||+|++..+++
T Consensus 170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~p~-~~D~v~~~~vlh 246 (332)
T 3i53_A 170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHR-RFLDTGLSGRAQVVVGSFFDPLPA-GAGGYVLSAVLH 246 (332)
T ss_dssp GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHH-HHHHTTCTTTEEEEECCTTSCCCC-SCSEEEEESCGG
T ss_pred CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHH-hhhhcCcCcCeEEecCCCCCCCCC-CCcEEEEehhhc
Confidence 359999999999999999874 5778877 544443332 2333444 5577777776556666 899999999998
Q ss_pred ccccC-hHHHHHHHHHhccCCeEEEEEcCC
Q 036725 281 PWSAN-DGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 281 ~~~~d-~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+|.++ ...+|+++.++|||||++++..+.
T Consensus 247 ~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 276 (332)
T 3i53_A 247 DWDDLSAVAILRRCAEAAGSGGVVLVIEAV 276 (332)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence 88733 378999999999999999997643
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=5.9e-11 Score=117.13 Aligned_cols=111 Identities=19% Similarity=0.247 Sum_probs=82.1
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccccCCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKLPYP 266 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~~lp~~ 266 (392)
...+++.++.... .+|||||||+|.++..++++ .++++|+ +..+..+.. ...+.++ +.+.++.++...+++
T Consensus 191 ~~~l~~~~~~~~~--~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~~~~l~~~v~~~~~d~~~~~p 266 (369)
T 3gwz_A 191 AGQVAAAYDFSGA--ATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARE-LLTGRGLADRCEILPGDFFETIP 266 (369)
T ss_dssp HHHHHHHSCCTTC--SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHH-HHHHTTCTTTEEEEECCTTTCCC
T ss_pred HHHHHHhCCCccC--cEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHH-hhhhcCcCCceEEeccCCCCCCC
Confidence 4556666654333 49999999999999999875 5778877 544444333 2333443 557777777666776
Q ss_pred CCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 267 SRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. .||+|++..++++|.++. ..+|+++.++|||||++++..
T Consensus 267 ~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e 307 (369)
T 3gwz_A 267 D-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVID 307 (369)
T ss_dssp S-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred C-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 6 899999999998887332 389999999999999999965
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.22 E-value=8.2e-12 Score=115.82 Aligned_cols=101 Identities=18% Similarity=0.259 Sum_probs=73.9
Q ss_pred CCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc----cCCCCCCc
Q 036725 199 IPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI----KLPYPSRA 269 (392)
Q Consensus 199 l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~----~lp~~d~s 269 (392)
+...+|. +|||+|||+|.++..|++. .|+++|+++.++..+. +.+.++ +++..+..+. ..++..++
T Consensus 73 l~ikpG~--~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~-~~a~~~--~ni~~V~~d~~~p~~~~~~~~~ 147 (233)
T 4df3_A 73 LPVKEGD--RILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLL-TVVRDR--RNIFPILGDARFPEKYRHLVEG 147 (233)
T ss_dssp CCCCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHH-HHSTTC--TTEEEEESCTTCGGGGTTTCCC
T ss_pred cCCCCCC--EEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-HhhHhh--cCeeEEEEeccCccccccccce
Confidence 4455665 9999999999999999975 6999999876554432 222222 4555555554 34567889
Q ss_pred cceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 270 FDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 270 FDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+|+|++.. +.+.+...++.++.|+|||||+++++.
T Consensus 148 vDvVf~d~---~~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 148 VDGLYADV---AQPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp EEEEEECC---CCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEEEec---cCChhHHHHHHHHHHhccCCCEEEEEE
Confidence 99998753 233366789999999999999999975
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.4e-11 Score=117.33 Aligned_cols=98 Identities=17% Similarity=0.212 Sum_probs=75.1
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCc-EEEEeccc-cCCCCCCccceEEeccccc-
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPA-VIGVLGTI-KLPYPSRAFDMAHCSRCLI- 280 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~~~~-~lp~~d~sFDlV~~~~~l~- 280 (392)
.+|||||||+|.++..++++ .|+++|+++ ++.. ..+.+...+... +.++.++. .+++++++||+|++..+..
T Consensus 68 ~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~-a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~ 145 (349)
T 3q7e_A 68 KVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDY-AVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC 145 (349)
T ss_dssp CEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHH-HHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred CEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHH-HHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccccc
Confidence 38999999999999999987 799999984 4444 344555566543 56666665 7888889999999965432
Q ss_pred -ccccChHHHHHHHHHhccCCeEEEEE
Q 036725 281 -PWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 281 -~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
+...+...++.++.|+|||||+++..
T Consensus 146 l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 146 LFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp BTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred ccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 23346689999999999999999753
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-10 Score=102.51 Aligned_cols=113 Identities=16% Similarity=0.144 Sum_probs=80.4
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccccCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKLPY 265 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~~lp~ 265 (392)
+.....+.+.+....+. +|||+|||+|.++..+++. .++++|+++..+..+.. .....+. +.+.+...+...++
T Consensus 19 ~~~~~~~~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~ 95 (192)
T 1l3i_A 19 MEVRCLIMCLAEPGKND--VAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEM-NLQRHGLGDNVTLMEGDAPEAL 95 (192)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHH-HHHHTTCCTTEEEEESCHHHHH
T ss_pred HHHHHHHHHhcCCCCCC--EEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHH-HHHHcCCCcceEEEecCHHHhc
Confidence 44555556655544443 8999999999999999886 78999887755544333 3334455 55666666652233
Q ss_pred CC-CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 266 PS-RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 266 ~d-~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++ ++||+|++...+. +...++.++.++|+|||.+++..+
T Consensus 96 ~~~~~~D~v~~~~~~~----~~~~~l~~~~~~l~~gG~l~~~~~ 135 (192)
T 1l3i_A 96 CKIPDIDIAVVGGSGG----ELQEILRIIKDKLKPGGRIIVTAI 135 (192)
T ss_dssp TTSCCEEEEEESCCTT----CHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccCCCCCEEEECCchH----HHHHHHHHHHHhcCCCcEEEEEec
Confidence 33 5899999986542 557899999999999999999764
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.1e-11 Score=111.99 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=74.6
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHH-----HcCCCcEEEEeccc-c-CC--CCCCccceE
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFAL-----ERGVPAVIGVLGTI-K-LP--YPSRAFDMA 273 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~-----~rg~~~~~~~~~~~-~-lp--~~d~sFDlV 273 (392)
.+|||||||+|.++..|++. .++|+|+++.++..+..+... ..+..++.++.++. . ++ +++++||.|
T Consensus 48 ~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~v 127 (235)
T 3ckk_A 48 VEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKM 127 (235)
T ss_dssp EEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEEE
T ss_pred CeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeEE
Confidence 38999999999999999876 689999988766655443322 13556777777776 3 66 789999999
Q ss_pred EecccccccccC--------hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 274 HCSRCLIPWSAN--------DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 274 ~~~~~l~~~~~d--------~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++.... +|... ...++.++.++|||||.|++.+...
T Consensus 128 ~~~~~d-p~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~ 171 (235)
T 3ckk_A 128 FFLFPD-PHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVL 171 (235)
T ss_dssp EEESCC------------CCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred EEeCCC-chhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCH
Confidence 875432 34211 1479999999999999999976543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.21 E-value=2.3e-11 Score=107.17 Aligned_cols=121 Identities=11% Similarity=-0.047 Sum_probs=83.5
Q ss_pred CccHHHHHHHHHhhCCC-CCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEec
Q 036725 185 PHGADAYIEELASVIPM-DSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLG 259 (392)
Q Consensus 185 ~~~~~~~i~~l~~~l~~-~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~ 259 (392)
....+.+.+.+.+.+.. ..+ .+|||+|||+|.++..++++ .++++|+++.++..+.. .+...++ +.+.++.+
T Consensus 25 rp~~~~~~~~~~~~l~~~~~~--~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~~ 101 (187)
T 2fhp_A 25 RPTTDKVKESIFNMIGPYFDG--GMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKE-NIAITKEPEKFEVRKM 101 (187)
T ss_dssp CCCCHHHHHHHHHHHCSCCSS--CEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHHTCGGGEEEEES
T ss_pred CcCHHHHHHHHHHHHHhhcCC--CCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHhCCCcceEEEEC
Confidence 34456677777777642 233 38999999999999988765 68999998765555443 3333444 35666666
Q ss_pred cc-c----CCCCCCccceEEecccccccccChHHHHHHH--HHhccCCeEEEEEcCCC
Q 036725 260 TI-K----LPYPSRAFDMAHCSRCLIPWSANDGMYMMEI--DRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 260 ~~-~----lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei--~RvLkPGG~lvl~~p~~ 310 (392)
+. . +++++++||+|++...++ ..+....+..+ .++|||||++++..+..
T Consensus 102 d~~~~~~~~~~~~~~fD~i~~~~~~~--~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 102 DANRALEQFYEEKLQFDLVLLDPPYA--KQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCCGG--GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred cHHHHHHHHHhcCCCCCEEEECCCCC--chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 64 3 223368899999986542 22556777777 89999999999987554
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.20 E-value=1e-10 Score=115.95 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=83.1
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-c
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-K 262 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~ 262 (392)
.+.+.+.+.+......+ .+|||||||+|.++..++++ .|+++|++ .++..+ .+.+...++. .+.++.++. .
T Consensus 48 ~~~~~~~i~~~~~~~~~--~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a-~~~~~~~~~~~~v~~~~~d~~~ 123 (376)
T 3r0q_C 48 MDAYFNAVFQNKHHFEG--KTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHA-RALVKANNLDHIVEVIEGSVED 123 (376)
T ss_dssp HHHHHHHHHTTTTTTTT--CEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHH-HHHHHHTTCTTTEEEEESCGGG
T ss_pred HHHHHHHHHhccccCCC--CEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHH-HHHHHHcCCCCeEEEEECchhh
Confidence 34456666665554444 38999999999999999986 78999998 666554 4455556654 356666665 7
Q ss_pred CCCCCCccceEEeccccccc--ccChHHHHHHHHHhccCCeEEEEE
Q 036725 263 LPYPSRAFDMAHCSRCLIPW--SANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~--~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
++++ ++||+|++..+.+.. ......++.++.|+|||||+++++
T Consensus 124 ~~~~-~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~ 168 (376)
T 3r0q_C 124 ISLP-EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPS 168 (376)
T ss_dssp CCCS-SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred cCcC-CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEe
Confidence 7776 899999996533222 134678999999999999999884
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.5e-10 Score=113.15 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=98.9
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCC---cEEEEec
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVP---AVIGVLG 259 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~---~~~~~~~ 259 (392)
..+.....+++.++...+ .+|||+|||+|.++..++++ .|+++|+++.++..+.. .+...++. .+.+..+
T Consensus 206 ~~d~~~~~ll~~l~~~~~--~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~-n~~~ngl~~~~~v~~~~~ 282 (375)
T 4dcm_A 206 GLDIGARFFMQHLPENLE--GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRL-NVETNMPEALDRCEFMIN 282 (375)
T ss_dssp SCCHHHHHHHHTCCCSCC--SEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHH-HHHHHCGGGGGGEEEEEC
T ss_pred cccHHHHHHHHhCcccCC--CeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHH-HHHHcCCCcCceEEEEec
Confidence 344445566777765444 38999999999999999876 68999998766555444 33344433 3555666
Q ss_pred cccCCCCCCccceEEeccccccc---ccCh-HHHHHHHHHhccCCeEEEEEcCCCchhhhhhhcccChHhHHHHHHHHHH
Q 036725 260 TIKLPYPSRAFDMAHCSRCLIPW---SAND-GMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEE 335 (392)
Q Consensus 260 ~~~lp~~d~sFDlV~~~~~l~~~---~~d~-~~~L~ei~RvLkPGG~lvl~~p~~~~~~~~~~w~~~~e~l~~~~~~i~~ 335 (392)
+..-++++++||+|+++..+++. .... ..++.++.++|||||.++++.+... . +...+++
T Consensus 283 D~~~~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~---------~-------~~~~l~~ 346 (375)
T 4dcm_A 283 NALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHL---------D-------YFHKLKK 346 (375)
T ss_dssp STTTTCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETTS---------C-------HHHHHHH
T ss_pred hhhccCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECCc---------C-------HHHHHHH
Confidence 66447778899999998776432 1122 4789999999999999999864331 0 0122333
Q ss_pred HHHHcCceecceeccEEEEEecC
Q 036725 336 IAKLLCWEKKHEKGETAIWQKRI 358 (392)
Q Consensus 336 l~~~l~W~~~~~~~~~~iw~KP~ 358 (392)
... ..+.+.+...+.|++-..
T Consensus 347 ~fg--~~~~~a~~~~F~V~~~~~ 367 (375)
T 4dcm_A 347 IFG--NCTTIATNNKFVVLKAVK 367 (375)
T ss_dssp HHS--CCEEEEECSSEEEEEEEC
T ss_pred hcC--CEEEEeeCCCEEEEEEcC
Confidence 322 345666677777777543
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.20 E-value=6e-10 Score=101.72 Aligned_cols=101 Identities=19% Similarity=0.019 Sum_probs=72.2
Q ss_pred ceEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc--cCCCCCCccceEEeccccc
Q 036725 207 RTALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--KLPYPSRAFDMAHCSRCLI 280 (392)
Q Consensus 207 ~~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~--~lp~~d~sFDlV~~~~~l~ 280 (392)
.+|||+||| +|.++..+++. .++++|+++.++..+.. .+...++ .+.++.++. ..++++++||+|+++..++
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~-~v~~~~~d~~~~~~~~~~~fD~I~~npp~~ 134 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARR-NIERNNS-NVRLVKSNGGIIKGVVEGTFDVIFSAPPYY 134 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHH-HHHHTTC-CCEEEECSSCSSTTTCCSCEEEEEECCCCC
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHHhCC-CcEEEeCCchhhhhcccCceeEEEECCCCc
Confidence 389999999 99999988875 78999988765555443 4444555 444455553 3456679999999985543
Q ss_pred cccc------------------ChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 281 PWSA------------------NDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 281 ~~~~------------------d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+... ....++.++.++|||||++++..+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 181 (230)
T 3evz_A 135 DKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPD 181 (230)
T ss_dssp ---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEES
T ss_pred CCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 3221 1267999999999999999997543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-10 Score=109.17 Aligned_cols=118 Identities=17% Similarity=0.185 Sum_probs=84.5
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK 262 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~ 262 (392)
..+.+++.+++.+. ..+ .+|||+|||+|.++..+++. .++++|+++..+..+.. .+...+++.+.++.++..
T Consensus 94 ~te~l~~~~l~~~~-~~~--~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~-n~~~~~~~~v~~~~~d~~ 169 (276)
T 2b3t_A 94 DTECLVEQALARLP-EQP--CRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQR-NAQHLAIKNIHILQSDWF 169 (276)
T ss_dssp THHHHHHHHHHHSC-SSC--CEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHH-HHHHHTCCSEEEECCSTT
T ss_pred hHHHHHHHHHHhcc-cCC--CEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEEcchh
Confidence 45667788888775 223 38999999999999998853 78999887765554433 334446666777777764
Q ss_pred CCCCCCccceEEeccccccc-------------c-----------cChHHHHHHHHHhccCCeEEEEEcC
Q 036725 263 LPYPSRAFDMAHCSRCLIPW-------------S-----------ANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~-------------~-----------~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.++++++||+|+++...+.. + .....++.++.++|||||++++..+
T Consensus 170 ~~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~ 239 (276)
T 2b3t_A 170 SALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 239 (276)
T ss_dssp GGGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred hhcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 44557899999998433221 1 1236789999999999999999754
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=105.26 Aligned_cols=111 Identities=18% Similarity=0.226 Sum_probs=80.7
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP 264 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp 264 (392)
.....+.+.+....+. +|||||||+|.++..+++. .++++|+++..+..+.. .....+.+.+.+..++...+
T Consensus 64 ~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~ 140 (215)
T 2yxe_A 64 HMVGMMCELLDLKPGM--KVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAER-TLRKLGYDNVIVIVGDGTLG 140 (215)
T ss_dssp HHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHH-HHHHHTCTTEEEEESCGGGC
T ss_pred HHHHHHHHhhCCCCCC--EEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCeEEEECCcccC
Confidence 4555666666544444 8999999999999888764 58999887755544433 33334556666666666444
Q ss_pred CC-CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 265 YP-SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 265 ~~-d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++ +++||+|++..+++++. .++.++|||||.+++..++.
T Consensus 141 ~~~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 141 YEPLAPYDRIYTTAAGPKIP-------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp CGGGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEESSS
T ss_pred CCCCCCeeEEEECCchHHHH-------HHHHHHcCCCcEEEEEECCC
Confidence 44 67899999998887665 58999999999999987654
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-10 Score=107.89 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=77.4
Q ss_pred HHhhCCCC-CCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-cCC--CC
Q 036725 195 LASVIPMD-SGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KLP--YP 266 (392)
Q Consensus 195 l~~~l~~~-~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~lp--~~ 266 (392)
+...+... .+ .+|||+|||+|.++..++++ .++++|+++..+..+.. .+...++. .+.++.++. .++ ++
T Consensus 40 l~~~~~~~~~~--~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~-n~~~~~~~~~v~~~~~D~~~~~~~~~ 116 (259)
T 3lpm_A 40 LAKFSYLPIRK--GKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKR-SVAYNQLEDQIEIIEYDLKKITDLIP 116 (259)
T ss_dssp HHHHCCCCSSC--CEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHH-HHHHTTCTTTEEEECSCGGGGGGTSC
T ss_pred HHHHhcCCCCC--CEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHH-HHHHCCCcccEEEEECcHHHhhhhhc
Confidence 34445443 33 38999999999999999987 68899887765544433 33344554 466666665 443 56
Q ss_pred CCccceEEeccccccc-------------------ccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 267 SRAFDMAHCSRCLIPW-------------------SANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~-------------------~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+++||+|+++..+... ..+...++.++.++|||||++++..++.
T Consensus 117 ~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 179 (259)
T 3lpm_A 117 KERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPE 179 (259)
T ss_dssp TTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred cCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHH
Confidence 8899999997443221 0123579999999999999999976543
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-10 Score=112.41 Aligned_cols=111 Identities=15% Similarity=0.211 Sum_probs=80.5
Q ss_pred HHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCC-CC
Q 036725 194 ELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLP-YP 266 (392)
Q Consensus 194 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp-~~ 266 (392)
.+++.++... ...+|||||||+|.++..++++ .++++|+ +..+..+.. ...+.++ +.+.++.++. ..+ +.
T Consensus 169 ~~l~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~ 245 (352)
T 3mcz_A 169 DVVSELGVFA-RARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARK-TIHAHDLGGRVEFFEKNLLDARNFE 245 (352)
T ss_dssp HHHHTCGGGT-TCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHH-HHHHTTCGGGEEEEECCTTCGGGGT
T ss_pred HHHHhCCCcC-CCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHH-HHHhcCCCCceEEEeCCcccCcccC
Confidence 5555555433 1349999999999999999875 6788888 555544433 3344454 3466777766 443 24
Q ss_pred CCccceEEecccccccccC-hHHHHHHHHHhccCCeEEEEEc
Q 036725 267 SRAFDMAHCSRCLIPWSAN-DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d-~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+.||+|++..++++|.++ ...+|+++.++|||||++++..
T Consensus 246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 287 (352)
T 3mcz_A 246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILT 287 (352)
T ss_dssp TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 5669999999999888732 2789999999999999999965
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-10 Score=112.85 Aligned_cols=113 Identities=13% Similarity=0.076 Sum_probs=83.8
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYP 266 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~ 266 (392)
....+.+.++... .+|||||||+|.++..++++ .++++|+ +..+..+..........+.+.++.++..-+++
T Consensus 156 ~~~~~~~~~~~~~---~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 231 (334)
T 2ip2_A 156 AFHEIPRLLDFRG---RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEVP 231 (334)
T ss_dssp HHHHHHHHSCCTT---CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCCC
T ss_pred HHHHHHHhCCCCC---CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCCC
Confidence 3455666665433 49999999999999999865 6899999 87777665543332212456667776633665
Q ss_pred CCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEcC
Q 036725 267 SRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++||+|++..++++|.++. ..+|+++.++|||||++++...
T Consensus 232 -~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 273 (334)
T 2ip2_A 232 -SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIER 273 (334)
T ss_dssp -SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEEC
T ss_pred -CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 6799999999998887322 4899999999999999999753
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-10 Score=112.87 Aligned_cols=112 Identities=17% Similarity=0.166 Sum_probs=83.5
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--C---cEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--N---VITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~---v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~ 262 (392)
....+.+.+.+...++. +|||||||+|.++..+++. . |+++|+++..+..+. +.+.+.+++++.+..++. .
T Consensus 61 ~~~~~~l~~~l~~~~~~--~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~-~~~~~~g~~~v~~~~~d~~~ 137 (317)
T 1dl5_A 61 PSLMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAK-RNVERLGIENVIFVCGDGYY 137 (317)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEESCGGG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHH-HHHHHcCCCCeEEEECChhh
Confidence 34566777777655554 8999999999999999875 4 999998876554433 334455666666677766 4
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.+.++++||+|++..++++.. .++.++|||||++++...+.
T Consensus 138 ~~~~~~~fD~Iv~~~~~~~~~-------~~~~~~LkpgG~lvi~~~~~ 178 (317)
T 1dl5_A 138 GVPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPINLK 178 (317)
T ss_dssp CCGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEBCBG
T ss_pred ccccCCCeEEEEEcCCHHHHH-------HHHHHhcCCCcEEEEEECCC
Confidence 444568899999998887665 68899999999999986543
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-11 Score=113.51 Aligned_cols=102 Identities=16% Similarity=0.226 Sum_probs=71.2
Q ss_pred cceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-----------------------------Cc
Q 036725 206 VRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-----------------------------PA 253 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-----------------------------~~ 253 (392)
..+|||||||+|.++..+++. .|+++|+++.++..+..... ..+. ..
T Consensus 57 ~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 135 (265)
T 2i62_A 57 GELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLK-KEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA 135 (265)
T ss_dssp EEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHT-TCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred CCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHh-cCCccccchhhhhhhhcccccccchHHHHHHhhhh
Confidence 358999999999999988876 67888887765544332211 1110 01
Q ss_pred E-EEEeccc-cC-CCCC---CccceEEeccccccccc---ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 254 V-IGVLGTI-KL-PYPS---RAFDMAHCSRCLIPWSA---NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 254 ~-~~~~~~~-~l-p~~d---~sFDlV~~~~~l~~~~~---d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+ .+...+. .+ ++++ ++||+|++..++++... +...++.++.|+|||||+|++...
T Consensus 136 v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 199 (265)
T 2i62_A 136 IKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDA 199 (265)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred heeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEec
Confidence 3 4444444 43 4455 89999999998873332 567899999999999999999763
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.18 E-value=5.5e-11 Score=108.76 Aligned_cols=108 Identities=13% Similarity=0.098 Sum_probs=77.5
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC--CcEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV--PAVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~--~~~~~~~~~~-~l 263 (392)
....+.+.+.+...++. +|||||||+|.++..+++. .++++|+++.. ++.++++.. ..+.+..++. ..
T Consensus 56 ~~~~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~-----~~~a~~~~~~~~~v~~~~~d~~~~ 128 (231)
T 1vbf_A 56 LNLGIFMLDELDLHKGQ--KVLEIGTGIGYYTALIAEIVDKVVSVEINEKM-----YNYASKLLSYYNNIKLILGDGTLG 128 (231)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEEESCHHH-----HHHHHHHHTTCSSEEEEESCGGGC
T ss_pred HHHHHHHHHhcCCCCCC--EEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHH-----HHHHHHHHhhcCCeEEEECCcccc
Confidence 34566677777654444 8999999999999999885 78899887643 334433311 1455566655 32
Q ss_pred CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 264 PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
..++++||+|++..+++++. .++.++|||||++++..++.
T Consensus 129 ~~~~~~fD~v~~~~~~~~~~-------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 129 YEEEKPYDRVVVWATAPTLL-------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp CGGGCCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEECSS
T ss_pred cccCCCccEEEECCcHHHHH-------HHHHHHcCCCcEEEEEEcCC
Confidence 22468899999998887665 57999999999999987654
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-11 Score=112.82 Aligned_cols=97 Identities=14% Similarity=0.204 Sum_probs=64.7
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccCh-HHH--HHHHHHHcCCCcEEEEeccc-cCCCC-CCccceEEecc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDS-HEA--QVQFALERGVPAVIGVLGTI-KLPYP-SRAFDMAHCSR 277 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~-~~a--~~~~a~~rg~~~~~~~~~~~-~lp~~-d~sFDlV~~~~ 277 (392)
.+|||||||+|.++..|+++ .|+|+|+++..+ ..+ ..+.+.+.+++++.+..++. .+|.. .+.+|.|+++
T Consensus 26 ~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~~- 104 (225)
T 3p2e_A 26 RVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISIL- 104 (225)
T ss_dssp EEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEEE-
T ss_pred CEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEEe-
Confidence 38999999999999999854 689999984333 221 11222345667777776665 66521 1444555443
Q ss_pred cccccc-------cChHHHHHHHHHhccCCeEEEEE
Q 036725 278 CLIPWS-------ANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 278 ~l~~~~-------~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.+|. .+...+|.++.|+|||||+|++.
T Consensus 105 --~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~ 138 (225)
T 3p2e_A 105 --FPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFV 138 (225)
T ss_dssp --SCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEE
T ss_pred --CCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEE
Confidence 2332 13356899999999999999993
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.6e-11 Score=110.99 Aligned_cols=98 Identities=11% Similarity=0.019 Sum_probs=71.8
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcC-CCcEEEEeccc-cCCCCC-----CccceEEecc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERG-VPAVIGVLGTI-KLPYPS-----RAFDMAHCSR 277 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg-~~~~~~~~~~~-~lp~~d-----~sFDlV~~~~ 277 (392)
.+|||||||+|.++..|++. .|+++|+++. +++.++++. ...+.++..+. .+++.. ..||+|++..
T Consensus 58 ~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~-----~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~ 132 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQFFPRVIGLDVSKS-----ALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT 132 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHHSSCEEEEESCHH-----HHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred CeEEEEcCCCCHHHHHHHHhCCCEEEEECCHH-----HHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcc
Confidence 38999999999999999887 7899988664 444554442 23455555554 433321 2499999998
Q ss_pred ccccccc-ChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 278 CLIPWSA-NDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 278 ~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
++++... +...+++++.++|||||++++....
T Consensus 133 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 133 GFHHIPVEKRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp SSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 8866643 4589999999999999998887543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.4e-11 Score=105.65 Aligned_cols=100 Identities=13% Similarity=0.111 Sum_probs=73.9
Q ss_pred eEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCC-CCCCccceEEecccc
Q 036725 208 TALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLP-YPSRAFDMAHCSRCL 279 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp-~~d~sFDlV~~~~~l 279 (392)
+|||+|||+|.++..++++ .++++|+++.++..+.. .+.+.++ +.+.++.++. .++ +.+++||+|++...+
T Consensus 25 ~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~~ 103 (197)
T 3eey_A 25 TVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTK-KLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGY 103 (197)
T ss_dssp EEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH-HHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEESB
T ss_pred EEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcCCc
Confidence 8999999999999988875 68999888765555443 3344455 5667777775 554 567899999988654
Q ss_pred cccc--------cChHHHHHHHHHhccCCeEEEEEcC
Q 036725 280 IPWS--------ANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 280 ~~~~--------~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.+.. .+...++.++.++|||||++++...
T Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 140 (197)
T 3eey_A 104 LPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY 140 (197)
T ss_dssp CTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence 2211 1235799999999999999999753
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.9e-11 Score=110.36 Aligned_cols=95 Identities=9% Similarity=0.011 Sum_probs=73.3
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCC---CCccceEEeccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYP---SRAFDMAHCSRC 278 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~---d~sFDlV~~~~~ 278 (392)
.+|||||||+|.++..|+.. .|+++|+++.++..+.. .+...+++++.++.++. .++++ +++||+|++..+
T Consensus 72 ~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~ 150 (240)
T 1xdz_A 72 NTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEK-LSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV 150 (240)
T ss_dssp CEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHH-HHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC
T ss_pred CEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCEEEEeccHHHhcccccccCCccEEEEecc
Confidence 38999999999999888842 78999988765555433 34445666677777765 66654 689999998652
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 279 LIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 279 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+...++.++.++|||||++++..
T Consensus 151 -----~~~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 151 -----ARLSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp -----SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred -----CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 367899999999999999999863
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.17 E-value=5.5e-11 Score=107.40 Aligned_cols=118 Identities=9% Similarity=-0.017 Sum_probs=82.4
Q ss_pred HHHHHHHHHhhCCCC-CCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c
Q 036725 188 ADAYIEELASVIPMD-SGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K 262 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~-~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~ 262 (392)
.+...+.+.+.+... .+ .+|||+|||+|.++..++.+ .|+++|+++.++..+.. .+...+++.+.++.++. .
T Consensus 38 ~~~~~~~l~~~l~~~~~~--~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~-~~~~~~~~~v~~~~~D~~~ 114 (202)
T 2fpo_A 38 TDRVRETLFNWLAPVIVD--AQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIK-NLATLKAGNARVVNSNAMS 114 (202)
T ss_dssp CHHHHHHHHHHHHHHHTT--CEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHH-HHHHTTCCSEEEECSCHHH
T ss_pred HHHHHHHHHHHHHhhcCC--CeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHH-HHHHcCCCcEEEEECCHHH
Confidence 345555555554321 23 38999999999999986665 68999888766655443 34445556677777765 3
Q ss_pred -CCCCCCccceEEecccccccccChHHHHHHHHH--hccCCeEEEEEcCCC
Q 036725 263 -LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDR--VLRPGGYWVLSGPLI 310 (392)
Q Consensus 263 -lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~R--vLkPGG~lvl~~p~~ 310 (392)
++..+++||+|++...+ +. .+...++.++.+ +|||||+++++....
T Consensus 115 ~~~~~~~~fD~V~~~~p~-~~-~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 115 FLAQKGTPHNIVFVDPPF-RR-GLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp HHSSCCCCEEEEEECCSS-ST-TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred HHhhcCCCCCEEEECCCC-CC-CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 56667899999997653 32 355778888866 599999999986443
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-10 Score=113.08 Aligned_cols=111 Identities=22% Similarity=0.318 Sum_probs=83.5
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-cCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KLP 264 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~lp 264 (392)
..+.+++.++...+ .+|||||||+|.++..++++ +++++|+ +..+..+.. ...+.+++ .+.++.++. ..|
T Consensus 178 ~~~~l~~~~~~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~ 253 (359)
T 1x19_A 178 AIQLLLEEAKLDGV--KKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNE-NAAEKGVADRMRGIAVDIYKES 253 (359)
T ss_dssp HHHHHHHHCCCTTC--CEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHH-HHHHTTCTTTEEEEECCTTTSC
T ss_pred hHHHHHHhcCCCCC--CEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHH-HHHhcCCCCCEEEEeCccccCC
Confidence 34566666664333 48999999999999999875 6799999 766665544 33344544 366677766 567
Q ss_pred CCCCccceEEecccccccccC-hHHHHHHHHHhccCCeEEEEEc
Q 036725 265 YPSRAFDMAHCSRCLIPWSAN-DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~~d-~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+++. |+|++..++++|.++ ...+|+++.++|||||++++..
T Consensus 254 ~~~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e 295 (359)
T 1x19_A 254 YPEA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILD 295 (359)
T ss_dssp CCCC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred CCCC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 7654 999999999888732 5789999999999999998865
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=8.5e-11 Score=115.60 Aligned_cols=111 Identities=23% Similarity=0.251 Sum_probs=79.1
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccccCCCCC
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKLPYPS 267 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~~lp~~d 267 (392)
+.+.+.+....+ .+|||||||+|.++..++++ .++++|+ +..+..+.. ...+.++. .+.++.++...+++.
T Consensus 172 ~~~~~~~~~~~~--~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~ 247 (374)
T 1qzz_A 172 EAPADAYDWSAV--RHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARR-RFADAGLADRVTVAEGDFFKPLPV 247 (374)
T ss_dssp HHHHHTSCCTTC--CEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHH-HHHHTTCTTTEEEEECCTTSCCSC
T ss_pred HHHHHhCCCCCC--CEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHH-HHHhcCCCCceEEEeCCCCCcCCC
Confidence 445555554333 48999999999999999875 5777877 544444333 22334543 566777776335554
Q ss_pred CccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEcC
Q 036725 268 RAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+ ||+|++..++++|.+.. ..+|+++.++|||||++++..+
T Consensus 248 ~-~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 248 T-ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp C-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred C-CCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 4 99999999998887332 4899999999999999998765
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.3e-11 Score=117.86 Aligned_cols=99 Identities=14% Similarity=0.229 Sum_probs=73.6
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cC--CCCCCccceEEeccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KL--PYPSRAFDMAHCSRC 278 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~l--p~~d~sFDlV~~~~~ 278 (392)
.+|||||||+|.++..++++ .++++|+ +..+..+.. .+.+.++ +.+.++.++. .. |++ ++||+|++..+
T Consensus 181 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~v 257 (363)
T 3dp7_A 181 KRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRK-QTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQF 257 (363)
T ss_dssp SEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHH-HHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEESC
T ss_pred CEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHH-HHHhcCcccceEEEEccccccCCCCC-CCcCEEEEech
Confidence 48999999999999999874 5788876 443333222 2222343 4567777776 43 576 78999999999
Q ss_pred ccccccCh-HHHHHHHHHhccCCeEEEEEcC
Q 036725 279 LIPWSAND-GMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 279 l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+++|.++. ..+|+++.++|||||++++..+
T Consensus 258 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 258 LDCFSEEEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp STTSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCcEEEEEee
Confidence 98887433 5889999999999999999653
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-10 Score=107.31 Aligned_cols=111 Identities=19% Similarity=0.218 Sum_probs=80.7
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYP 266 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~ 266 (392)
.....+.+.+...++. +|||||||+|.++..+++. .++++|+++..+..+.. .....+++++.+..++...+++
T Consensus 78 ~~~~~~~~~l~~~~~~--~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~~ 154 (235)
T 1jg1_A 78 HMVAIMLEIANLKPGM--NILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKR-NLERAGVKNVHVILGDGSKGFP 154 (235)
T ss_dssp HHHHHHHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHH-HHHHTTCCSEEEEESCGGGCCG
T ss_pred HHHHHHHHhcCCCCCC--EEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHH-HHHHcCCCCcEEEECCcccCCC
Confidence 3455566665544443 8999999999999998874 79999987754444333 3334566666667777656666
Q ss_pred CCc-cceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 267 SRA-FDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 267 d~s-FDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++. ||+|++..++.++. .++.++|||||.++++.+..
T Consensus 155 ~~~~fD~Ii~~~~~~~~~-------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 155 PKAPYDVIIVTAGAPKIP-------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp GGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEECSS
T ss_pred CCCCccEEEECCcHHHHH-------HHHHHhcCCCcEEEEEEecC
Confidence 554 99999998776554 58899999999999987654
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.17 E-value=9.2e-11 Score=113.41 Aligned_cols=115 Identities=14% Similarity=0.170 Sum_probs=81.2
Q ss_pred HHHHHHhhCCC--CCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-c
Q 036725 191 YIEELASVIPM--DSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-K 262 (392)
Q Consensus 191 ~i~~l~~~l~~--~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~ 262 (392)
....+++.++. ..+ .+|||||||+|.++..++++ .++++|++ ..+..+... ..+.++. .+.++.++. .
T Consensus 151 ~~~~~~~~~~~~~~~~--~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~-~~~~~~~~~v~~~~~d~~~ 226 (335)
T 2r3s_A 151 PAQLIAQLVNENKIEP--LKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKEN-ARIQGVASRYHTIAGSAFE 226 (335)
T ss_dssp HHHHHHHHHTC--CCC--SEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHH-HHHHTCGGGEEEEESCTTT
T ss_pred hHHHHHHhcccccCCC--CEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHH-HHhcCCCcceEEEeccccc
Confidence 34455555543 333 48999999999999999875 58888776 444443332 2233443 466677766 5
Q ss_pred CCCCCCccceEEeccccccccc-ChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.+++++ ||+|++..+++++.+ +...+|+++.++|||||++++..+..
T Consensus 227 ~~~~~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 227 VDYGND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp SCCCSC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CCCCCC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence 677655 999999999988863 23789999999999999999876443
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=7.9e-11 Score=110.32 Aligned_cols=109 Identities=21% Similarity=0.237 Sum_probs=77.7
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPS 267 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d 267 (392)
..++.+...+. .+ .+|||+|||+|.++..+++. .++++|+++..+..+.. .+...++. +.+..++...++++
T Consensus 109 ~~~~~l~~~~~--~~--~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~-n~~~~~~~-v~~~~~d~~~~~~~ 182 (254)
T 2nxc_A 109 LALKALARHLR--PG--DKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEA-NAKRNGVR-PRFLEGSLEAALPF 182 (254)
T ss_dssp HHHHHHHHHCC--TT--CEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHH-HHHHTTCC-CEEEESCHHHHGGG
T ss_pred HHHHHHHHhcC--CC--CEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHH-HHHHcCCc-EEEEECChhhcCcC
Confidence 34444444432 33 38999999999999998877 68999999877666544 44455655 44555554223557
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++||+|+++...+ ....++.++.++|||||++++++.
T Consensus 183 ~~fD~Vv~n~~~~----~~~~~l~~~~~~LkpgG~lils~~ 219 (254)
T 2nxc_A 183 GPFDLLVANLYAE----LHAALAPRYREALVPGGRALLTGI 219 (254)
T ss_dssp CCEEEEEEECCHH----HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCEEEECCcHH----HHHHHHHHHHHHcCCCCEEEEEee
Confidence 7899999874331 346899999999999999999753
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=108.12 Aligned_cols=96 Identities=17% Similarity=0.062 Sum_probs=72.9
Q ss_pred cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCC---CCccceEEecc
Q 036725 206 VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYP---SRAFDMAHCSR 277 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~---d~sFDlV~~~~ 277 (392)
..+|||||||+|..+..|+.. .|+++|+++..+..+.. .+.+.++.++.++.++. .++.. +++||+|++..
T Consensus 81 ~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a 159 (249)
T 3g89_A 81 PLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVER-AIEVLGLKGARALWGRAEVLAREAGHREAYARAVARA 159 (249)
T ss_dssp SCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHH-HHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEES
T ss_pred CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHhCCCceEEEECcHHHhhcccccCCCceEEEECC
Confidence 348999999999998888754 69999988765555433 44455776677777765 55542 58999999864
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 278 CLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 278 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+ .+...++.++.++|||||+|++..
T Consensus 160 ~-----~~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 160 V-----APLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp S-----CCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred c-----CCHHHHHHHHHHHcCCCeEEEEEe
Confidence 3 256789999999999999998854
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.2e-10 Score=104.07 Aligned_cols=114 Identities=14% Similarity=0.172 Sum_probs=81.3
Q ss_pred ccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCC--cEEEEe
Q 036725 186 HGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVP--AVIGVL 258 (392)
Q Consensus 186 ~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~--~~~~~~ 258 (392)
.....++..+....+..++. +|||||||+|..+..|++. .++++|+++..+..+.. ...+.++. .+.++.
T Consensus 39 ~~~~~~l~~l~~~~~~~~~~--~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~g~~~~~i~~~~ 115 (221)
T 3dr5_A 39 EMTGQLLTTLAATTNGNGST--GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKA-LFREAGYSPSRVRFLL 115 (221)
T ss_dssp HHHHHHHHHHHHHSCCTTCC--EEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHH-HHHHTTCCGGGEEEEC
T ss_pred HHHHHHHHHHHHhhCCCCCC--CEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCcCcEEEEE
Confidence 34455677777666533232 8999999999999998863 68999888765555443 34445554 577777
Q ss_pred ccc-c-CC-CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 259 GTI-K-LP-YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 259 ~~~-~-lp-~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
++. . ++ +++++||+|++... ..+...++.++.++|||||++++.
T Consensus 116 gda~~~l~~~~~~~fD~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d 162 (221)
T 3dr5_A 116 SRPLDVMSRLANDSYQLVFGQVS----PMDLKALVDAAWPLLRRGGALVLA 162 (221)
T ss_dssp SCHHHHGGGSCTTCEEEEEECCC----TTTHHHHHHHHHHHEEEEEEEEET
T ss_pred cCHHHHHHHhcCCCcCeEEEcCc----HHHHHHHHHHHHHHcCCCcEEEEe
Confidence 765 2 33 44789999998642 235567999999999999999995
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.16 E-value=4e-11 Score=109.88 Aligned_cols=85 Identities=15% Similarity=0.244 Sum_probs=66.9
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc--cCCCC-CCccceEEeccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--KLPYP-SRAFDMAHCSRCLIPW 282 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~--~lp~~-d~sFDlV~~~~~l~~~ 282 (392)
+|||||||+|.++..|++. .++++|+++ .+++.++++. +.+.++.++. .+|++ +++||+|+++
T Consensus 51 ~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~-----~~~~~a~~~~-~~~~~~~~d~~~~~~~~~~~~fD~v~~~------ 118 (226)
T 3m33_A 51 RVLEAGCGHGPDAARFGPQAARWAAYDFSP-----ELLKLARANA-PHADVYEWNGKGELPAGLGAPFGLIVSR------ 118 (226)
T ss_dssp EEEEESCTTSHHHHHHGGGSSEEEEEESCH-----HHHHHHHHHC-TTSEEEECCSCSSCCTTCCCCEEEEEEE------
T ss_pred eEEEeCCCCCHHHHHHHHcCCEEEEEECCH-----HHHHHHHHhC-CCceEEEcchhhccCCcCCCCEEEEEeC------
Confidence 8999999999999999987 688887765 4556666654 3344444444 68888 8999999986
Q ss_pred ccChHHHHHHHHHhccCCeEEEE
Q 036725 283 SANDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPGG~lvl 305 (392)
.+...++.++.++|||||+++.
T Consensus 119 -~~~~~~l~~~~~~LkpgG~l~~ 140 (226)
T 3m33_A 119 -RGPTSVILRLPELAAPDAHFLY 140 (226)
T ss_dssp -SCCSGGGGGHHHHEEEEEEEEE
T ss_pred -CCHHHHHHHHHHHcCCCcEEEE
Confidence 2556788999999999999994
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-11 Score=106.56 Aligned_cols=118 Identities=9% Similarity=-0.014 Sum_probs=78.0
Q ss_pred HHHHHHHHHhhCC-CCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-
Q 036725 188 ADAYIEELASVIP-MDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI- 261 (392)
Q Consensus 188 ~~~~i~~l~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~- 261 (392)
.+...+.+.+.+. ...+ .+|||+|||+|.++..++++ .++++|+++.++..+.. .+...++. .+.+..++.
T Consensus 15 ~~~~~~~~~~~l~~~~~~--~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~~d~~ 91 (177)
T 2esr_A 15 SDKVRGAIFNMIGPYFNG--GRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQD-NIIMTKAENRFTLLKMEAE 91 (177)
T ss_dssp ---CHHHHHHHHCSCCCS--CEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHH-HHHTTTCGGGEEEECSCHH
T ss_pred HHHHHHHHHHHHHhhcCC--CeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECcHH
Confidence 3445556666554 2233 38999999999999998876 68899887755544333 33334543 466666665
Q ss_pred c-CCCCCCccceEEecccccccccChHHHHHHHH--HhccCCeEEEEEcCCC
Q 036725 262 K-LPYPSRAFDMAHCSRCLIPWSANDGMYMMEID--RVLRPGGYWVLSGPLI 310 (392)
Q Consensus 262 ~-lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~--RvLkPGG~lvl~~p~~ 310 (392)
. ++..+++||+|++...++ . .....++..+. ++|||||++++..+..
T Consensus 92 ~~~~~~~~~fD~i~~~~~~~-~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 92 RAIDCLTGRFDLVFLDPPYA-K-ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp HHHHHBCSCEEEEEECCSSH-H-HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HhHHhhcCCCCEEEECCCCC-c-chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 3 444456799999975432 1 24456777776 9999999999987544
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=9.1e-11 Score=101.43 Aligned_cols=105 Identities=16% Similarity=0.208 Sum_probs=74.4
Q ss_pred HHHHHHhhCCC-CCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC
Q 036725 191 YIEELASVIPM-DSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL 263 (392)
Q Consensus 191 ~i~~l~~~l~~-~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l 263 (392)
.+..+.+.+.. ..+ .+|||+|||+|.++..+++. .++++|+++ +... +.+.+...+. ..
T Consensus 9 ~l~~~~~~~~~~~~~--~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~ 74 (180)
T 1ej0_A 9 KLDEIQQSDKLFKPG--MTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDE 74 (180)
T ss_dssp HHHHHHHHHCCCCTT--CEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSH
T ss_pred HHHHHHHHhCCCCCC--CeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccc
Confidence 34445555442 233 38999999999999888764 689999987 5321 3445555554 55
Q ss_pred C--------CCCCccceEEecccccccccCh-----------HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 264 P--------YPSRAFDMAHCSRCLIPWSAND-----------GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 264 p--------~~d~sFDlV~~~~~l~~~~~d~-----------~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+ +++++||+|+++..++... +. ..++.++.++|||||.++++.+..
T Consensus 75 ~~~~~~~~~~~~~~~D~i~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 75 LVMKALLERVGDSKVQVVMSDMAPNMSG-TPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCCCCS-CHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred hhhhhhhccCCCCceeEEEECCCccccC-CCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 5 6778999999987664332 33 589999999999999999976433
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.5e-10 Score=113.54 Aligned_cols=114 Identities=11% Similarity=0.151 Sum_probs=83.8
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~l 263 (392)
..+.+.+.+.+...++. +|||||||+|.++..++++ .|+++|+++ +. ....+.++..++ +.+.++.++. .+
T Consensus 36 ~~y~~~i~~~l~~~~~~--~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~-~~a~~~~~~~~l~~~v~~~~~d~~~~ 111 (348)
T 2y1w_A 36 GTYQRAILQNHTDFKDK--IVLDVGCGSGILSFFAAQAGARKIYAVEAST-MA-QHAEVLVKSNNLTDRIVVIPGKVEEV 111 (348)
T ss_dssp HHHHHHHHHTGGGTTTC--EEEEETCTTSHHHHHHHHTTCSEEEEEECST-HH-HHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHHhccccCCcC--EEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HH-HHHHHHHHHcCCCCcEEEEEcchhhC
Confidence 44666777766544443 8999999999999999876 689999985 44 333444555565 4566666665 66
Q ss_pred CCCCCccceEEeccccccccc-ChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 PYPSRAFDMAHCSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+++ ++||+|++..+++++.. +....+.++.++|||||++++..
T Consensus 112 ~~~-~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 112 SLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp CCS-SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred CCC-CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 665 67999999877766653 34678889999999999999753
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.15 E-value=3.6e-11 Score=104.22 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=77.5
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c-
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K- 262 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~- 262 (392)
..+...+.+.+.+........+|||+|||+|.++..++++ .++++|+++.++..+..+ +...+. .+.+..++. .
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~-~~~~~~~d~~~~ 100 (171)
T 1ws6_A 23 SPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKEN-VRRTGL-GARVVALPVEVF 100 (171)
T ss_dssp CCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHH-HHHHTC-CCEEECSCHHHH
T ss_pred CHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHH-HHHcCC-ceEEEeccHHHH
Confidence 3445555555554321101238999999999999999886 588998877655544433 333444 444555554 3
Q ss_pred CCC---CCCccceEEecccccccccChHHHHHHHH--HhccCCeEEEEEcCCC
Q 036725 263 LPY---PSRAFDMAHCSRCLIPWSANDGMYMMEID--RVLRPGGYWVLSGPLI 310 (392)
Q Consensus 263 lp~---~d~sFDlV~~~~~l~~~~~d~~~~L~ei~--RvLkPGG~lvl~~p~~ 310 (392)
++. ..++||+|++...++ .+...++..+. ++|||||+++++.+..
T Consensus 101 ~~~~~~~~~~~D~i~~~~~~~---~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 101 LPEAKAQGERFTVAFMAPPYA---MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp HHHHHHTTCCEEEEEECCCTT---SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred HHhhhccCCceEEEEECCCCc---hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 221 134899999986553 35556677777 9999999999987655
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=113.02 Aligned_cols=113 Identities=15% Similarity=0.180 Sum_probs=79.3
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~l 263 (392)
..+.+.+.+.+....+. +|||||||+|.++..++++ .|+++|+++ ++.. ..+.+...+. +.+.++.++. .+
T Consensus 24 ~~y~~ai~~~~~~~~~~--~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~-~~~~-a~~~~~~~~~~~~i~~~~~d~~~~ 99 (328)
T 1g6q_1 24 LSYRNAIIQNKDLFKDK--IVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEM-AKELVELNGFSDKITLLRGKLEDV 99 (328)
T ss_dssp HHHHHHHHHHHHHHTTC--EEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHH-HHHHHHHTTCTTTEEEEESCTTTS
T ss_pred HHHHHHHHhhHhhcCCC--EEEEecCccHHHHHHHHHCCCCEEEEEChHH-HHHH-HHHHHHHcCCCCCEEEEECchhhc
Confidence 34445554443322333 8999999999999999876 699999983 4443 3444555565 3466666665 77
Q ss_pred CCCCCccceEEecccccc--cccChHHHHHHHHHhccCCeEEEE
Q 036725 264 PYPSRAFDMAHCSRCLIP--WSANDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~--~~~d~~~~L~ei~RvLkPGG~lvl 305 (392)
++++++||+|++..+... .......++.++.|+|||||+++.
T Consensus 100 ~~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 100 HLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CCSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cCCCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 888889999998744322 223567899999999999999984
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=102.34 Aligned_cols=90 Identities=13% Similarity=0.072 Sum_probs=67.7
Q ss_pred eEEEECCcCchHHHHHhhC-CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccccC-
Q 036725 208 TALDTGCGVASWGAYLFKK-NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSAN- 285 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d- 285 (392)
+|||+|||+|.++..++++ .++++|+++. +++. .+.+.++.++...++++++||+|+++..+++..+.
T Consensus 26 ~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~-----~~~~-----~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 26 IVLDLGTSTGVITEQLRKRNTVVSTDLNIR-----ALES-----HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp EEEEETCTTCHHHHHHTTTSEEEEEESCHH-----HHHT-----CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred eEEEeccCccHHHHHHHhcCcEEEEECCHH-----HHhc-----ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 8999999999999999988 7888877654 3333 23344566666447777999999998776543322
Q ss_pred -------hHHHHHHHHHhccCCeEEEEEcC
Q 036725 286 -------DGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 286 -------~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
...++.++.+.| |||.+++..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~ 124 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVI 124 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-CSSEEEEEEE
T ss_pred cccCCcchHHHHHHHHhhC-CCCEEEEEEe
Confidence 257889999999 9999999763
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.1e-10 Score=104.32 Aligned_cols=140 Identities=12% Similarity=0.098 Sum_probs=78.9
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEe--------
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVL-------- 258 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~-------- 258 (392)
..++.+++.+.... ...+|||||||+|.++..|+++ .|+++|+++.++..+ +++.........
T Consensus 23 ~kL~~~L~~~~~~~-~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a-----~~~~~~~~~~~~~~~~~~~~ 96 (232)
T 3opn_A 23 LKLEKALKEFHLEI-NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWK-----IRSDERVVVMEQFNFRNAVL 96 (232)
T ss_dssp HHHHHHHHHTTCCC-TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHH-----HHTCTTEEEECSCCGGGCCG
T ss_pred HHHHHHHHHcCCCC-CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHH-----HHhCccccccccceEEEeCH
Confidence 34555666665432 2348999999999999999886 689999998876643 332211111111
Q ss_pred ccccC-CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCchhhhhhh-----cccChHhHHHHHHH
Q 036725 259 GTIKL-PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQA-----WQRPIKELEEEQRK 332 (392)
Q Consensus 259 ~~~~l-p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~~~~~~~~-----w~~~~e~l~~~~~~ 332 (392)
++... ++...+||+++++ ...+|.++.|+|||||+|++...+ .+...+.. ..+....-......
T Consensus 97 ~~~~~~~~d~~~~D~v~~~---------l~~~l~~i~rvLkpgG~lv~~~~p-~~e~~~~~~~~~G~~~d~~~~~~~~~~ 166 (232)
T 3opn_A 97 ADFEQGRPSFTSIDVSFIS---------LDLILPPLYEILEKNGEVAALIKP-QFEAGREQVGKNGIIRDPKVHQMTIEK 166 (232)
T ss_dssp GGCCSCCCSEEEECCSSSC---------GGGTHHHHHHHSCTTCEEEEEECH-HHHSCHHHHC-CCCCCCHHHHHHHHHH
T ss_pred hHcCcCCCCEEEEEEEhhh---------HHHHHHHHHHhccCCCEEEEEECc-ccccCHHHhCcCCeecCcchhHHHHHH
Confidence 11111 1223344544432 256899999999999999997522 12111111 11112222223455
Q ss_pred HHHHHHHcCceec
Q 036725 333 IEEIAKLLCWEKK 345 (392)
Q Consensus 333 i~~l~~~l~W~~~ 345 (392)
+.++.+...|+..
T Consensus 167 l~~~l~~aGf~v~ 179 (232)
T 3opn_A 167 VLKTATQLGFSVK 179 (232)
T ss_dssp HHHHHHHHTEEEE
T ss_pred HHHHHHHCCCEEE
Confidence 6666677777644
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=106.84 Aligned_cols=111 Identities=15% Similarity=0.147 Sum_probs=82.1
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCc-EEEEeccccCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPA-VIGVLGTIKLP 264 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~~~~~lp 264 (392)
.+..+...+...++. +|||+|||+|.++..+++. .++++|+++..+..+.. .+...+++. +.+..++...+
T Consensus 81 ~~~~i~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~ 157 (255)
T 3mb5_A 81 DAALIVAYAGISPGD--FIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWE-NIKWAGFDDRVTIKLKDIYEG 157 (255)
T ss_dssp HHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH-HHHHHTCTTTEEEECSCGGGC
T ss_pred HHHHHHHhhCCCCCC--EEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHH-HHHHcCCCCceEEEECchhhc
Confidence 344566666655554 8999999999999988865 68889887754444333 333446555 77777777666
Q ss_pred CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 265 YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+++++||+|++. .. ++..++.++.++|||||++++..+..
T Consensus 158 ~~~~~~D~v~~~-----~~-~~~~~l~~~~~~L~~gG~l~~~~~~~ 197 (255)
T 3mb5_A 158 IEEENVDHVILD-----LP-QPERVVEHAAKALKPGGFFVAYTPCS 197 (255)
T ss_dssp CCCCSEEEEEEC-----SS-CGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred cCCCCcCEEEEC-----CC-CHHHHHHHHHHHcCCCCEEEEEECCH
Confidence 888999999984 22 55678999999999999999987544
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-10 Score=106.16 Aligned_cols=111 Identities=18% Similarity=0.224 Sum_probs=81.0
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
+..+.+.+...++. +|||+|||+|.++..+++. .++++|+++..+..+........+.+.+.+...+. ..++
T Consensus 85 ~~~~~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~ 162 (258)
T 2pwy_A 85 ASAMVTLLDLAPGM--RVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAEL 162 (258)
T ss_dssp HHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCC
T ss_pred HHHHHHHcCCCCCC--EEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCC
Confidence 34566666654554 8999999999999988865 68999887765554443332221555666666666 6678
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++++||+|++. .. ++..++.++.++|||||++++..+..
T Consensus 163 ~~~~~D~v~~~-----~~-~~~~~l~~~~~~L~~gG~l~~~~~~~ 201 (258)
T 2pwy_A 163 EEAAYDGVALD-----LM-EPWKVLEKAALALKPDRFLVAYLPNI 201 (258)
T ss_dssp CTTCEEEEEEE-----SS-CGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred CCCCcCEEEEC-----Cc-CHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 88899999973 22 56688999999999999999987644
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-10 Score=108.93 Aligned_cols=116 Identities=12% Similarity=0.091 Sum_probs=78.6
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcC---chHHHHHhh----CCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGV---ASWGAYLFK----KNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K 262 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~---G~~~~~L~~----~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~ 262 (392)
+++.+.+.+....+ .++|||||||+ |.++..+.+ ..|+++|+++.++..+.... ...+.+.++.++. .
T Consensus 64 ~~~~~~~~l~~~~~-~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~---~~~~~v~~~~~D~~~ 139 (274)
T 2qe6_A 64 VLVRGVRFLAGEAG-ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALL---AKDPNTAVFTADVRD 139 (274)
T ss_dssp HHHHHHHHHHTTTC-CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHH---TTCTTEEEEECCTTC
T ss_pred HHHHHHHHHhhccC-CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhc---CCCCCeEEEEeeCCC
Confidence 44555544432122 34899999999 988766654 27999998876555443322 1224556666665 2
Q ss_pred C-----------CCCCCccceEEecccccccccC-hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 263 L-----------PYPSRAFDMAHCSRCLIPWSAN-DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 263 l-----------p~~d~sFDlV~~~~~l~~~~~d-~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
. .++..+||+|++..+++++.++ ...+|+++.++|||||+|+++....
T Consensus 140 ~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 140 PEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp HHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred chhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 1 1333589999999988777642 6899999999999999999986443
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-10 Score=112.54 Aligned_cols=112 Identities=21% Similarity=0.321 Sum_probs=79.9
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccccCCCCC
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKLPYPS 267 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~~lp~~d 267 (392)
+.+++.++...+ .+|||||||+|.++..++++ .++++|+ +..+..+.. .+...++. .+.++.++...+++.
T Consensus 173 ~~l~~~~~~~~~--~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~ 248 (360)
T 1tw3_A 173 DAPAAAYDWTNV--RHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARS-YLKDEGLSDRVDVVEGDFFEPLPR 248 (360)
T ss_dssp HHHHHHSCCTTC--SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHH-HHHHTTCTTTEEEEECCTTSCCSS
T ss_pred HHHHHhCCCccC--cEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHH-HHHhcCCCCceEEEeCCCCCCCCC
Confidence 445555554333 48999999999999999875 4667777 654444433 33344543 566777776335554
Q ss_pred CccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEcCC
Q 036725 268 RAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+ ||+|++..++++|.+.. ..+|+++.++|||||++++..+.
T Consensus 249 ~-~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 249 K-ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp C-EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred C-ccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 4 99999999998887333 58999999999999999997654
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=6.9e-11 Score=117.24 Aligned_cols=106 Identities=12% Similarity=0.143 Sum_probs=75.6
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCc------CchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEE
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCG------VASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGV 257 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG------~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~ 257 (392)
....+.+++.+... ..+||||||| +|..+..++++ .|+++|+++.+. ...+++.++
T Consensus 203 ~~~Ye~lL~~l~~~---~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~----------~~~~rI~fv 269 (419)
T 3sso_A 203 TPHYDRHFRDYRNQ---QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH----------VDELRIRTI 269 (419)
T ss_dssp HHHHHHHHGGGTTS---CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG----------GCBTTEEEE
T ss_pred HHHHHHHHHhhcCC---CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh----------hcCCCcEEE
Confidence 34455555544322 2489999999 66666655542 799999998752 123556666
Q ss_pred eccc-cCCCC------CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 258 LGTI-KLPYP------SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 258 ~~~~-~lp~~------d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
.++. .+||. +++||+|++.. .+ +..+...+|+++.|+|||||+|++..-.
T Consensus 270 ~GDa~dlpf~~~l~~~d~sFDlVisdg-sH-~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 270 QGDQNDAEFLDRIARRYGPFDIVIDDG-SH-INAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp ECCTTCHHHHHHHHHHHCCEEEEEECS-CC-CHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred EecccccchhhhhhcccCCccEEEECC-cc-cchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 6666 77776 78999999974 43 4447789999999999999999997543
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=6.5e-10 Score=105.50 Aligned_cols=123 Identities=10% Similarity=0.005 Sum_probs=85.9
Q ss_pred EEecCCCCCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC
Q 036725 175 FRFPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV 251 (392)
Q Consensus 175 ~~fp~~g~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~ 251 (392)
+.+.-....|..........+.+.+. ++. +|||+|||+|.++..+++. .|+++|+++.++..+.. .+...++
T Consensus 99 f~~d~~~~~f~~~~~~~~~~l~~~~~--~~~--~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~-n~~~n~~ 173 (278)
T 2frn_A 99 YKLDVAKIMFSPANVKERVRMAKVAK--PDE--LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVE-NIHLNKV 173 (278)
T ss_dssp EEEETTTSCCCGGGHHHHHHHHHHCC--TTC--EEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHH-HHHHTTC
T ss_pred EEEEccceeEcCCcHHHHHHHHHhCC--CCC--EEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHH-HHHHcCC
Confidence 33333345555554455566666653 333 8999999999999999875 39999998866655443 4445565
Q ss_pred Cc-EEEEeccc-cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 252 PA-VIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 252 ~~-~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.. +.++.++. .++. +++||+|++... .....++.++.++|||||++++...
T Consensus 174 ~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p-----~~~~~~l~~~~~~LkpgG~l~~~~~ 226 (278)
T 2frn_A 174 EDRMSAYNMDNRDFPG-ENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp TTTEEEECSCTTTCCC-CSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred CceEEEEECCHHHhcc-cCCccEEEECCc-----hhHHHHHHHHHHHCCCCeEEEEEEe
Confidence 53 66666666 5554 789999998632 2446789999999999999999753
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-10 Score=110.36 Aligned_cols=109 Identities=14% Similarity=0.153 Sum_probs=76.5
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHc-CCCcEEEEeccccCCCC
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALER-GVPAVIGVLGTIKLPYP 266 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~r-g~~~~~~~~~~~~lp~~ 266 (392)
..+.+.+...++. +|||+|||+|.++..+++. .++++|+++..+..+.. .+... +.+++.+..++...+++
T Consensus 100 ~~~~~~~~~~~~~--~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~g~~~v~~~~~d~~~~~~ 176 (275)
T 1yb2_A 100 SYIIMRCGLRPGM--DILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMD-NLSEFYDIGNVRTSRSDIADFIS 176 (275)
T ss_dssp ------CCCCTTC--EEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHH-HHHTTSCCTTEEEECSCTTTCCC
T ss_pred HHHHHHcCCCCcC--EEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHH-HHHhcCCCCcEEEEECchhccCc
Confidence 3445555544444 8999999999999988764 68888887654443332 23333 56667777777755777
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+++||+|++. .. ++..++.++.++|||||+++++.+..
T Consensus 177 ~~~fD~Vi~~-----~~-~~~~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 177 DQMYDAVIAD-----IP-DPWNHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp SCCEEEEEEC-----CS-CGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred CCCccEEEEc-----Cc-CHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 8899999983 22 66789999999999999999987644
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-10 Score=113.84 Aligned_cols=116 Identities=15% Similarity=0.167 Sum_probs=80.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP 264 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp 264 (392)
+...+.+++.+....+ .+|||+|||+|.++..++++ .++++|+++.++..+.. .+...++...+ ..++. +.
T Consensus 182 d~~~~~ll~~l~~~~~--~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~-~~~~~~~~~~~-~~~d~-~~ 256 (343)
T 2pjd_A 182 DVGSQLLLSTLTPHTK--GKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRA-TLAANGVEGEV-FASNV-FS 256 (343)
T ss_dssp CHHHHHHHHHSCTTCC--SBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHH-HHHHTTCCCEE-EECST-TT
T ss_pred cHHHHHHHHhcCcCCC--CeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHhCCCCEE-EEccc-cc
Confidence 4455666676643333 38999999999999998865 69999988765555443 33344554443 33333 22
Q ss_pred CCCCccceEEeccccccc----ccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 265 YPSRAFDMAHCSRCLIPW----SANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~----~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+.+++||+|+++..+++. ..+...++.++.|+|||||.+++..+.
T Consensus 257 ~~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 257 EVKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp TCCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred cccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 347899999999877531 223478999999999999999998653
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.8e-10 Score=107.22 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=81.4
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcC--CCcEEEEeccc-c
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERG--VPAVIGVLGTI-K 262 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg--~~~~~~~~~~~-~ 262 (392)
.+..+++.+...++. +|||+|||+|.++..+++. .++++|+++..+..+........+ .+++.+...+. .
T Consensus 87 ~~~~i~~~~~~~~~~--~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~ 164 (280)
T 1i9g_A 87 DAAQIVHEGDIFPGA--RVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD 164 (280)
T ss_dssp HHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred HHHHHHHHcCCCCCC--EEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh
Confidence 345566666655554 8999999999999988863 688998877655544433332203 45666676666 6
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.++++++||+|++.. . ++..++.++.++|||||++++..+..
T Consensus 165 ~~~~~~~~D~v~~~~-----~-~~~~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 165 SELPDGSVDRAVLDM-----L-APWEVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp CCCCTTCEEEEEEES-----S-CGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred cCCCCCceeEEEECC-----c-CHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 777788999999842 2 55678999999999999999987644
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.3e-10 Score=102.53 Aligned_cols=111 Identities=16% Similarity=0.074 Sum_probs=75.3
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcC-----CCcEEEEeccc
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERG-----VPAVIGVLGTI 261 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg-----~~~~~~~~~~~ 261 (392)
...+++.+........+|||+|||+|.++..+++. .++++|+++..+..+.... ...+ ..++.+...+.
T Consensus 64 ~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~v~~~~~d~ 142 (226)
T 1i1n_A 64 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNV-RKDDPTLLSSGRVQLVVGDG 142 (226)
T ss_dssp HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHH-HHHCTHHHHTSSEEEEESCG
T ss_pred HHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHH-HhhcccccCCCcEEEEECCc
Confidence 33444555411112238999999999999988763 6899998876555544332 2222 34555566665
Q ss_pred -cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 262 -KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 262 -~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
..+.++++||+|++...+.+. +.++.++|||||+++++.++.
T Consensus 143 ~~~~~~~~~fD~i~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 143 RMGYAEEAPYDAIHVGAAAPVV-------PQALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp GGCCGGGCCEEEEEECSBBSSC-------CHHHHHTEEEEEEEEEEESCT
T ss_pred ccCcccCCCcCEEEECCchHHH-------HHHHHHhcCCCcEEEEEEecC
Confidence 444457789999998776554 378999999999999987554
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.5e-11 Score=106.03 Aligned_cols=113 Identities=9% Similarity=0.098 Sum_probs=81.3
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK 262 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~ 262 (392)
..+.+.+.+.+.++. . .+|||+|||+|.++..++.. .++++|+++.++..+.. .+...|+...+.+.+...
T Consensus 35 ~ld~fY~~~~~~l~~--~--~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~-~~~~~g~~~~v~~~d~~~ 109 (200)
T 3fzg_A 35 TLNDFYTYVFGNIKH--V--SSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSS-IIGKLKTTIKYRFLNKES 109 (200)
T ss_dssp GHHHHHHHHHHHSCC--C--SEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHH-HHHHSCCSSEEEEECCHH
T ss_pred hHHHHHHHHHhhcCC--C--CeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHH-HHHhcCCCccEEEecccc
Confidence 445666666777742 2 38999999999999999554 78899887766655443 344556663233344332
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
. .+.++||+|+...++++. ++.+..+.++.+.|||||+||-.
T Consensus 110 ~-~~~~~~DvVLa~k~LHlL-~~~~~al~~v~~~L~pggvfISf 151 (200)
T 3fzg_A 110 D-VYKGTYDVVFLLKMLPVL-KQQDVNILDFLQLFHTQNFVISF 151 (200)
T ss_dssp H-HTTSEEEEEEEETCHHHH-HHTTCCHHHHHHTCEEEEEEEEE
T ss_pred c-CCCCCcChhhHhhHHHhh-hhhHHHHHHHHHHhCCCCEEEEe
Confidence 2 457889999999888777 57777777999999999998874
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.10 E-value=2.4e-10 Score=115.12 Aligned_cols=115 Identities=13% Similarity=0.047 Sum_probs=82.2
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHH--HHHH----HHHcC--CCcEEE
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEA--QVQF----ALERG--VPAVIG 256 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a--~~~~----a~~rg--~~~~~~ 256 (392)
...+..+++.+....+. +|||||||+|.++..+++. .|+|+|+++..+..+ |++. +...| ..++.+
T Consensus 228 p~~v~~ml~~l~l~~g~--~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~ 305 (433)
T 1u2z_A 228 PNFLSDVYQQCQLKKGD--TFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 305 (433)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred HHHHHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEE
Confidence 45566777777655554 8999999999999999874 599999987655544 3332 23346 456666
Q ss_pred Eecc-ccC--CC--CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 257 VLGT-IKL--PY--PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 257 ~~~~-~~l--p~--~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+.++ ... ++ ..++||+|+++..+ +.++...+|.++.|+|||||.+++..
T Consensus 306 i~gD~~~~~~~~~~~~~~FDvIvvn~~l--~~~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 306 SLKKSFVDNNRVAELIPQCDVILVNNFL--FDEDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp EESSCSTTCHHHHHHGGGCSEEEECCTT--CCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred EEcCccccccccccccCCCCEEEEeCcc--ccccHHHHHHHHHHhCCCCeEEEEee
Confidence 6543 322 22 25789999987655 33467788999999999999999974
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-10 Score=105.69 Aligned_cols=96 Identities=17% Similarity=0.216 Sum_probs=69.9
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c---CCCCCCccceEEecc
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K---LPYPSRAFDMAHCSR 277 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~---lp~~d~sFDlV~~~~ 277 (392)
.+|||+|||+|.++..|+++ .++++|+++.++.. +.+.++++ +++.+..++. . +++.+++||+|++..
T Consensus 79 ~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~-~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~ 155 (233)
T 2ipx_A 79 AKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRD-LINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDVIFADV 155 (233)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHH-HHHHHHHC--TTEEEECSCTTCGGGGGGGCCCEEEEEECC
T ss_pred CEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHH-HHHHhhcc--CCeEEEEcccCChhhhcccCCcEEEEEEcC
Confidence 38999999999999998864 68999887754333 44555554 4556666665 3 455678999999864
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 278 CLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 278 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
. .......++.++.++|||||+++++.+
T Consensus 156 ~---~~~~~~~~~~~~~~~LkpgG~l~i~~~ 183 (233)
T 2ipx_A 156 A---QPDQTRIVALNAHTFLRNGGHFVISIK 183 (233)
T ss_dssp C---CTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C---CccHHHHHHHHHHHHcCCCeEEEEEEc
Confidence 3 221225668899999999999999754
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.8e-10 Score=105.84 Aligned_cols=90 Identities=20% Similarity=0.254 Sum_probs=65.1
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c----CCCCCCccceEEecc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K----LPYPSRAFDMAHCSR 277 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~----lp~~d~sFDlV~~~~ 277 (392)
.+|||+|||+|.++..|++. .|+++|+++.++..+.. .+... +++.++.++. . ++++ ++||+|+..
T Consensus 76 ~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~-~~~~~--~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~- 150 (230)
T 1fbn_A 76 SKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLD-ACAER--ENIIPILGDANKPQEYANIV-EKVDVIYED- 150 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHH-HTTTC--TTEEEEECCTTCGGGGTTTS-CCEEEEEEC-
T ss_pred CEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHH-HhhcC--CCeEEEECCCCCcccccccC-ccEEEEEEe-
Confidence 38999999999999988865 58899887654433222 22222 5566666655 4 6666 789999832
Q ss_pred cccccccCh---HHHHHHHHHhccCCeEEEEE
Q 036725 278 CLIPWSAND---GMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 278 ~l~~~~~d~---~~~L~ei~RvLkPGG~lvl~ 306 (392)
.. ++ ..++.++.++|||||+++++
T Consensus 151 ----~~-~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 151 ----VA-QPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp ----CC-STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ----cC-ChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 22 33 67899999999999999996
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.09 E-value=8.6e-11 Score=109.31 Aligned_cols=117 Identities=16% Similarity=0.082 Sum_probs=75.3
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC------CcEEEeCCccChHHHHHHHHHHc--CCCc--------
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK------NVITMSFAPRDSHEAQVQFALER--GVPA-------- 253 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~------~v~~vd~s~~d~~~a~~~~a~~r--g~~~-------- 253 (392)
.+++.+++.+.... ..+|||+|||+|.++..+++. .|+++|+++.++..+........ ++..
T Consensus 38 ~l~~~~l~~~~~~~--~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~ 115 (250)
T 1o9g_A 38 EIFQRALARLPGDG--PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQ 115 (250)
T ss_dssp HHHHHHHHTSSCCS--CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCC--CCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhh
Confidence 56666666554222 348999999999999988764 68999888766555443221110 1110
Q ss_pred ------------------EE-------------EEeccccCCC------CCCccceEEecccccccc--------cChHH
Q 036725 254 ------------------VI-------------GVLGTIKLPY------PSRAFDMAHCSRCLIPWS--------ANDGM 288 (392)
Q Consensus 254 ------------------~~-------------~~~~~~~lp~------~d~sFDlV~~~~~l~~~~--------~d~~~ 288 (392)
+. +..++..-+. ..++||+|+|+..+++.. +....
T Consensus 116 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~ 195 (250)
T 1o9g_A 116 SERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAG 195 (250)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHH
T ss_pred hhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHH
Confidence 11 4445542233 345899999986554332 12358
Q ss_pred HHHHHHHhccCCeEEEEEcC
Q 036725 289 YMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 289 ~L~ei~RvLkPGG~lvl~~p 308 (392)
++.++.++|||||+++++..
T Consensus 196 ~l~~~~~~LkpgG~l~~~~~ 215 (250)
T 1o9g_A 196 LLRSLASALPAHAVIAVTDR 215 (250)
T ss_dssp HHHHHHHHSCTTCEEEEEES
T ss_pred HHHHHHHhcCCCcEEEEeCc
Confidence 99999999999999999543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.4e-11 Score=115.39 Aligned_cols=107 Identities=17% Similarity=0.132 Sum_probs=75.3
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHH-HHHHcCC-CcEEEEeccccCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQ-FALERGV-PAVIGVLGTIKLPY 265 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~-~a~~rg~-~~~~~~~~~~~lp~ 265 (392)
.+.+++.++...+ .+|||||||+|.++..++++ .++++|+ .....+ .+.+.+. +.+.++.++...++
T Consensus 173 ~~~~~~~~~~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~~~~~~~~~~~~~~~~v~~~~~d~~~~~ 245 (348)
T 3lst_A 173 HLILARAGDFPAT--GTVADVGGGRGGFLLTVLREHPGLQGVLLDR-----AEVVARHRLDAPDVAGRWKVVEGDFLREV 245 (348)
T ss_dssp HHHHHHHSCCCSS--EEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-----HHHHTTCCCCCGGGTTSEEEEECCTTTCC
T ss_pred HHHHHHhCCccCC--ceEEEECCccCHHHHHHHHHCCCCEEEEecC-----HHHhhcccccccCCCCCeEEEecCCCCCC
Confidence 3455666654333 49999999999999999875 4566655 221110 0011122 34666777764566
Q ss_pred CCCccceEEecccccccccCh--HHHHHHHHHhccCCeEEEEEcC
Q 036725 266 PSRAFDMAHCSRCLIPWSAND--GMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~--~~~L~ei~RvLkPGG~lvl~~p 308 (392)
| +||+|++..++++|. +. ..+|+++.|+|||||++++...
T Consensus 246 p--~~D~v~~~~vlh~~~-d~~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 246 P--HADVHVLKRILHNWG-DEDSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp C--CCSEEEEESCGGGSC-HHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred C--CCcEEEEehhccCCC-HHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 5 899999999998887 44 6999999999999999999753
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-10 Score=103.56 Aligned_cols=93 Identities=13% Similarity=0.063 Sum_probs=70.7
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~ 282 (392)
+|||+|||+|.++..++.. .++++|+++..+..+.. .+...+++++.+..++. .++ ++++||+|++.. +
T Consensus 68 ~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~-~--- 141 (207)
T 1jsx_A 68 RFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQ-VQHELKLENIEPVQSRVEEFP-SEPPFDGVISRA-F--- 141 (207)
T ss_dssp EEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHH-HHHHTTCSSEEEEECCTTTSC-CCSCEEEEECSC-S---
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCCeEEEecchhhCC-ccCCcCEEEEec-c---
Confidence 8999999999999988864 78999988765544333 34445665566666665 444 568999999753 2
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEc
Q 036725 283 SANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+...++.++.++|+|||++++..
T Consensus 142 -~~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 142 -ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred -CCHHHHHHHHHHhcCCCcEEEEEe
Confidence 266799999999999999999974
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-09 Score=101.04 Aligned_cols=96 Identities=19% Similarity=0.172 Sum_probs=70.8
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-c-CCCC--CCccceEEec
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-K-LPYP--SRAFDMAHCS 276 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~-lp~~--d~sFDlV~~~ 276 (392)
.+|||||||+|..+..|++. .|+++|+++..+..+.. .+.+.++. .+.+..++. . ++.. .++||+|++.
T Consensus 65 ~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d 143 (248)
T 3tfw_A 65 KRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARE-NLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFID 143 (248)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHH-HHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEEC
T ss_pred CEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEEC
Confidence 38999999999999999875 68999988765554443 33444554 566666665 2 4432 3489999986
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. ...+...++.++.++|||||++++..
T Consensus 144 ~----~~~~~~~~l~~~~~~LkpGG~lv~~~ 170 (248)
T 3tfw_A 144 A----DKPNNPHYLRWALRYSRPGTLIIGDN 170 (248)
T ss_dssp S----CGGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred C----chHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 4 23355789999999999999999864
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-11 Score=109.09 Aligned_cols=118 Identities=14% Similarity=0.008 Sum_probs=69.4
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL 263 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l 263 (392)
.+.+++.+.+.+... ....+|||+|||+|.++..+++. .++++|+++.++..+..+. ...+. .+.++.++...
T Consensus 14 ~~~~~~~~~~~l~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~-~~~~~~~d~~~ 90 (215)
T 4dzr_A 14 TEVLVEEAIRFLKRM-PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNA-ERFGA-VVDWAAADGIE 90 (215)
T ss_dssp HHHHHHHHHHHHTTC-CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHH
T ss_pred HHHHHHHHHHHhhhc-CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHH-HHhCC-ceEEEEcchHh
Confidence 455677777776541 22348999999999999999886 6899999887665544322 22233 33444444422
Q ss_pred CCCC-----CccceEEecccccccc------cC-------------------hHHHHHHHHHhccCCeE-EEEEcC
Q 036725 264 PYPS-----RAFDMAHCSRCLIPWS------AN-------------------DGMYMMEIDRVLRPGGY-WVLSGP 308 (392)
Q Consensus 264 p~~d-----~sFDlV~~~~~l~~~~------~d-------------------~~~~L~ei~RvLkPGG~-lvl~~p 308 (392)
++++ ++||+|+++..+++.. .. ...++.++.++|||||+ +++..+
T Consensus 91 ~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 166 (215)
T 4dzr_A 91 WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG 166 (215)
T ss_dssp HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 5555 8999999964432211 00 06788999999999999 666543
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-10 Score=105.93 Aligned_cols=95 Identities=13% Similarity=0.102 Sum_probs=71.9
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-c-CC-CCCCccceEEecccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-K-LP-YPSRAFDMAHCSRCL 279 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~-lp-~~d~sFDlV~~~~~l 279 (392)
+|||||||+|.++..|++. .++++|+++..+..+.. .+.+.++. .+.++.++. . ++ ..+++||+|++..
T Consensus 74 ~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~-- 150 (232)
T 3ntv_A 74 NILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQ-NLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDA-- 150 (232)
T ss_dssp EEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHH-HHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEET--
T ss_pred EEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcC--
Confidence 8999999999999999983 78999998766555443 33445553 666777766 3 33 3378999999763
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 280 IPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 280 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
...+...++.++.++|||||++++..
T Consensus 151 --~~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 151 --AKAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp --TSSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred --cHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 23356789999999999999998853
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.3e-10 Score=104.20 Aligned_cols=109 Identities=15% Similarity=0.180 Sum_probs=73.6
Q ss_pred HHHHHHhhCC---CCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc
Q 036725 191 YIEELASVIP---MDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK 262 (392)
Q Consensus 191 ~i~~l~~~l~---~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~ 262 (392)
....++..+. ..++. +|||+|||+|.++..+++. .|+++|+++.++.. +++.++++ +++..+.++..
T Consensus 61 la~~ll~~l~~~~l~~g~--~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~-l~~~a~~r--~nv~~i~~Da~ 135 (232)
T 3id6_C 61 LAGAILKGLKTNPIRKGT--KVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRE-LLLVAQRR--PNIFPLLADAR 135 (232)
T ss_dssp HHHHHHTTCSCCSCCTTC--EEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHH-HHHHHHHC--TTEEEEECCTT
T ss_pred HHHHHHhhhhhcCCCCCC--EEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHH-HHHHhhhc--CCeEEEEcccc
Confidence 3444555443 44444 9999999999999988874 69999998765433 34455555 45666666653
Q ss_pred CC----CCCCccceEEecccccccccChHH-HHHHHHHhccCCeEEEEEcC
Q 036725 263 LP----YPSRAFDMAHCSRCLIPWSANDGM-YMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 263 lp----~~d~sFDlV~~~~~l~~~~~d~~~-~L~ei~RvLkPGG~lvl~~p 308 (392)
.| ...++||+|++.... . +... ++..+.++|||||+|+++..
T Consensus 136 ~~~~~~~~~~~~D~I~~d~a~---~-~~~~il~~~~~~~LkpGG~lvisik 182 (232)
T 3id6_C 136 FPQSYKSVVENVDVLYVDIAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIK 182 (232)
T ss_dssp CGGGTTTTCCCEEEEEECCCC---T-THHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cchhhhccccceEEEEecCCC---h-hHHHHHHHHHHHhCCCCeEEEEEEc
Confidence 22 124689999987432 2 4444 45566779999999999853
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.07 E-value=4.1e-10 Score=103.02 Aligned_cols=109 Identities=14% Similarity=0.216 Sum_probs=76.8
Q ss_pred HHHHHHhhCC--CCCCCcceEEEECCcCchHHHHHhhC----------CcEEEeCCccChHHHHHHHHHHcC-----CCc
Q 036725 191 YIEELASVIP--MDSGMVRTALDTGCGVASWGAYLFKK----------NVITMSFAPRDSHEAQVQFALERG-----VPA 253 (392)
Q Consensus 191 ~i~~l~~~l~--~~~~~~~~VLDiGCG~G~~~~~L~~~----------~v~~vd~s~~d~~~a~~~~a~~rg-----~~~ 253 (392)
....+.+.+. ..++ .+|||||||+|.++..+++. .++++|+++..+..+..... +.+ .++
T Consensus 70 ~~~~~~~~l~~~~~~~--~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~ 146 (227)
T 1r18_A 70 MHAFALEYLRDHLKPG--ARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLN-TDDRSMLDSGQ 146 (227)
T ss_dssp HHHHHHHHTTTTCCTT--CEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHH-HHHHHHHHHTS
T ss_pred HHHHHHHHHHhhCCCC--CEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHH-hcCccccCCCc
Confidence 3445555553 2233 38999999999999888763 68999988765555443332 222 345
Q ss_pred EEEEeccccCCCCC-CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 254 VIGVLGTIKLPYPS-RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 254 ~~~~~~~~~lp~~d-~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+.+..++...++++ ++||+|++...+.+.. .++.++|||||++++...+
T Consensus 147 v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~~-------~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 147 LLIVEGDGRKGYPPNAPYNAIHVGAAAPDTP-------TELINQLASGGRLIVPVGP 196 (227)
T ss_dssp EEEEESCGGGCCGGGCSEEEEEECSCBSSCC-------HHHHHTEEEEEEEEEEESC
T ss_pred eEEEECCcccCCCcCCCccEEEECCchHHHH-------HHHHHHhcCCCEEEEEEec
Confidence 66666766446665 7899999988776544 8899999999999998654
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2e-10 Score=100.70 Aligned_cols=85 Identities=16% Similarity=0.102 Sum_probs=66.1
Q ss_pred ceEEEECCcCchHHHHHhhCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc-ccCCC---CCCccceEEeccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT-IKLPY---PSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~-~~lp~---~d~sFDlV~~~~~l~~~ 282 (392)
.+|||||||.. + .|+++.+++.|+++....+.+..++ ..+++ ++++||+|++..++++.
T Consensus 14 ~~vL~~~~g~v------------~-----vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~ 76 (176)
T 2ld4_A 14 QFVAVVWDKSS------------P-----VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGST 76 (176)
T ss_dssp SEEEEEECTTS------------C-----HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCC
T ss_pred CEEEEecCCce------------e-----eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhc
Confidence 48999999961 1 3778888888887643233334444 46776 89999999999988776
Q ss_pred ccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 283 SANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 283 ~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
..+...+|+++.|+|||||+|++..|
T Consensus 77 ~~~~~~~l~~~~r~LkpgG~l~~~~~ 102 (176)
T 2ld4_A 77 TLHSAEILAEIARILRPGGCLFLKEP 102 (176)
T ss_dssp CCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence 35889999999999999999999755
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.2e-10 Score=108.75 Aligned_cols=100 Identities=12% Similarity=0.134 Sum_probs=69.0
Q ss_pred ceEEEECCcCch----HHHHHhhC--------CcEEEeCCccChHHHHHHHH---HHcCC--------------------
Q 036725 207 RTALDTGCGVAS----WGAYLFKK--------NVITMSFAPRDSHEAQVQFA---LERGV-------------------- 251 (392)
Q Consensus 207 ~~VLDiGCG~G~----~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a---~~rg~-------------------- 251 (392)
.+|||+|||+|. ++..|++. .|+++|+++.++..+....- ..+++
T Consensus 107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 186 (274)
T 1af7_A 107 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLV 186 (274)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEE
T ss_pred cEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCce
Confidence 489999999997 55555542 58888877665544433210 00000
Q ss_pred -------CcEEEEeccc-cCCCC-CCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEE
Q 036725 252 -------PAVIGVLGTI-KLPYP-SRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 252 -------~~~~~~~~~~-~lp~~-d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~ 306 (392)
..+.+...+. ..|++ .++||+|+|..+++++.+.. .+++.++.++|+|||+|++.
T Consensus 187 ~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 187 RVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 1345555555 55665 67899999999998776332 78999999999999999994
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.8e-10 Score=100.10 Aligned_cols=89 Identities=18% Similarity=0.314 Sum_probs=64.0
Q ss_pred ceEEEECCcCchHHHHHhhC------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC---------------
Q 036725 207 RTALDTGCGVASWGAYLFKK------NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP--------------- 264 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp--------------- 264 (392)
.+|||+|||+|.++..++++ .++++|+++.. ..+.+.++.++. .++
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~------------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~ 91 (201)
T 2plw_A 24 KIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD------------PIPNVYFIQGEIGKDNMNNIKNINYIDNMNN 91 (201)
T ss_dssp EEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC------------CCTTCEEEECCTTTTSSCCC-----------
T ss_pred CEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC------------CCCCceEEEccccchhhhhhccccccccccc
Confidence 38999999999999998764 58999998731 123344455554 444
Q ss_pred ----------CCCCccceEEecccccccc---cCh-------HHHHHHHHHhccCCeEEEEEc
Q 036725 265 ----------YPSRAFDMAHCSRCLIPWS---AND-------GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 265 ----------~~d~sFDlV~~~~~l~~~~---~d~-------~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+++++||+|++..+++... .+. ..++.++.++|||||.|++..
T Consensus 92 ~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 154 (201)
T 2plw_A 92 NSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKM 154 (201)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 5678999999986653211 122 247899999999999999965
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.06 E-value=2.1e-10 Score=104.72 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=69.7
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc--cCCCC-----CCccceE
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI--KLPYP-----SRAFDMA 273 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~--~lp~~-----d~sFDlV 273 (392)
.+|||||||+|..+..|++. .|+++|+++.++..+.. .+...++. .+.++.++. .++.. .++||+|
T Consensus 60 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V 138 (221)
T 3u81_A 60 SLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQ-MLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 138 (221)
T ss_dssp SEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHH-HHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred CEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHH-HHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence 38999999999999999873 68999998765555443 33344543 466666664 23322 2789999
Q ss_pred EecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 274 HCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 274 ~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++.....++. +...++.++ ++|||||++++..
T Consensus 139 ~~d~~~~~~~-~~~~~~~~~-~~LkpgG~lv~~~ 170 (221)
T 3u81_A 139 FLDHWKDRYL-PDTLLLEKC-GLLRKGTVLLADN 170 (221)
T ss_dssp EECSCGGGHH-HHHHHHHHT-TCCCTTCEEEESC
T ss_pred EEcCCcccch-HHHHHHHhc-cccCCCeEEEEeC
Confidence 9886554443 444677777 9999999999964
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.06 E-value=4.9e-10 Score=102.00 Aligned_cols=110 Identities=16% Similarity=0.196 Sum_probs=75.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI- 261 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~- 261 (392)
..++..+.... .+ .+|||||||+|.++..|++. .++++|+++..+..+.. ...+.++. .+.+..++.
T Consensus 53 ~~~l~~l~~~~---~~--~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~v~~~~~d~~ 126 (225)
T 3tr6_A 53 AQLLALLVKLM---QA--KKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKE-YWEKAGLSDKIGLRLSPAK 126 (225)
T ss_dssp HHHHHHHHHHH---TC--SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEESCHH
T ss_pred HHHHHHHHHhh---CC--CEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHH-HHHHCCCCCceEEEeCCHH
Confidence 44555554433 22 38999999999999999875 68999988765555443 33444554 366666654
Q ss_pred c-CC-CC----CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 262 K-LP-YP----SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 262 ~-lp-~~----d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
. ++ +. .++||+|++.. ...+...++.++.++|||||++++...
T Consensus 127 ~~~~~~~~~~~~~~fD~v~~~~----~~~~~~~~l~~~~~~L~pgG~lv~~~~ 175 (225)
T 3tr6_A 127 DTLAELIHAGQAWQYDLIYIDA----DKANTDLYYEESLKLLREGGLIAVDNV 175 (225)
T ss_dssp HHHHHHHTTTCTTCEEEEEECS----CGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred HHHHHhhhccCCCCccEEEECC----CHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 2 22 11 17899999653 333567899999999999999999753
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.6e-10 Score=111.45 Aligned_cols=103 Identities=17% Similarity=0.293 Sum_probs=75.2
Q ss_pred HHHHHhhCC-CCCCCcceEEEECCcCchHHHHHhhC--C--cEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCC
Q 036725 192 IEELASVIP-MDSGMVRTALDTGCGVASWGAYLFKK--N--VITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYP 266 (392)
Q Consensus 192 i~~l~~~l~-~~~~~~~~VLDiGCG~G~~~~~L~~~--~--v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~ 266 (392)
...+++.++ ... ..+|||||||+|.++..++++ + ++++|+ + .+++.+++ .+.+.++.++..-+++
T Consensus 197 ~~~l~~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~-----~~~~~a~~--~~~v~~~~~d~~~~~~ 266 (372)
T 1fp1_D 197 MKRMLEIYTGFEG--ISTLVDVGGGSGRNLELIISKYPLIKGINFDL-P-----QVIENAPP--LSGIEHVGGDMFASVP 266 (372)
T ss_dssp HHHHHHHCCTTTT--CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCC--CTTEEEEECCTTTCCC
T ss_pred HHHHHHHhhccCC--CCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-H-----HHHHhhhh--cCCCEEEeCCcccCCC
Confidence 355555554 222 348999999999999999886 3 445554 3 34444433 2456777777633666
Q ss_pred CCccceEEecccccccccChH--HHHHHHHHhccCCeEEEEEc
Q 036725 267 SRAFDMAHCSRCLIPWSANDG--MYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~--~~L~ei~RvLkPGG~lvl~~ 307 (392)
+ ||+|++..++++|. +.. .+|+++.|+|||||++++..
T Consensus 267 ~--~D~v~~~~~lh~~~-d~~~~~~l~~~~~~L~pgG~l~i~e 306 (372)
T 1fp1_D 267 Q--GDAMILKAVCHNWS-DEKCIEFLSNCHKALSPNGKVIIVE 306 (372)
T ss_dssp C--EEEEEEESSGGGSC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred C--CCEEEEecccccCC-HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 5 99999999998887 555 99999999999999999974
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.3e-10 Score=106.40 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=73.5
Q ss_pred HHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHH---cCCC-cEEEEeccc-cC--
Q 036725 195 LASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALE---RGVP-AVIGVLGTI-KL-- 263 (392)
Q Consensus 195 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~---rg~~-~~~~~~~~~-~l-- 263 (392)
+...+....+ .+|||+|||+|.++..++++ .++++|+++..+..+.. .+.. .++. .+.++.++. .+
T Consensus 28 L~~~~~~~~~--~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~-n~~~~~~~~l~~~v~~~~~D~~~~~~ 104 (260)
T 2ozv_A 28 LASLVADDRA--CRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARR-SLELPDNAAFSARIEVLEADVTLRAK 104 (260)
T ss_dssp HHHTCCCCSC--EEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHH-HTTSGGGTTTGGGEEEEECCTTCCHH
T ss_pred HHHHhcccCC--CEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHH-HHHhhhhCCCcceEEEEeCCHHHHhh
Confidence 3444443333 48999999999999988875 68888876654333322 2222 3333 355666665 43
Q ss_pred -----CCCCCccceEEeccccccc-----------------ccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 264 -----PYPSRAFDMAHCSRCLIPW-----------------SANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 264 -----p~~d~sFDlV~~~~~l~~~-----------------~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
++++++||+|+++..+... ......++.++.++|||||+|++..+.
T Consensus 105 ~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 172 (260)
T 2ozv_A 105 ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRP 172 (260)
T ss_dssp HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcH
Confidence 3668899999997433211 113568899999999999999997643
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.1e-09 Score=104.07 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=77.6
Q ss_pred ccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeC-CccChHHHHHHHH----HHcCCC-----
Q 036725 186 HGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSF-APRDSHEAQVQFA----LERGVP----- 252 (392)
Q Consensus 186 ~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~-s~~d~~~a~~~~a----~~rg~~----- 252 (392)
.....+.+.+.+......+ .+|||||||+|.++..+++. .|+++|+ ++..+..+..+.. ...++.
T Consensus 62 ~~~~~l~~~l~~~~~~~~~--~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~ 139 (281)
T 3bzb_A 62 SGARALADTLCWQPELIAG--KTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRA 139 (281)
T ss_dssp CHHHHHHHHHHHCGGGTTT--CEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------C
T ss_pred cHHHHHHHHHHhcchhcCC--CeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCC
Confidence 4455666666665433333 38999999999999988875 6899999 6765554443321 222321
Q ss_pred cEEEEeccc-----cCC--CCCCccceEEecccccccccChHHHHHHHHHhcc---C--CeEEEEEc
Q 036725 253 AVIGVLGTI-----KLP--YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLR---P--GGYWVLSG 307 (392)
Q Consensus 253 ~~~~~~~~~-----~lp--~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLk---P--GG~lvl~~ 307 (392)
.+.+...+. .+. +++++||+|+++.++++. ++...++.++.++|+ | ||.+++..
T Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~-~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 140 SPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFH-QAHDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp CCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCG-GGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred CeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccCh-HHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 233332221 111 036789999998887654 377899999999999 9 99887753
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.1e-11 Score=111.25 Aligned_cols=96 Identities=18% Similarity=0.165 Sum_probs=74.0
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCCCCCCccceEEecccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
+|||+|||+|.++..+++. .|+++|+++.++..+.. .+...++ +.+.++.++. .++ ++++||+|+++..+++..
T Consensus 81 ~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~~~ 158 (241)
T 3gdh_A 81 VVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARN-NAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGGPD 158 (241)
T ss_dssp EEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSSGG
T ss_pred EEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcCCcc
Confidence 8999999999999999987 78999998765555433 4445565 4666777766 555 578999999987775543
Q ss_pred cChHHHHHHHHHhccCCeEEEEE
Q 036725 284 ANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
+....+.++.++|+|||++++.
T Consensus 159 -~~~~~~~~~~~~L~pgG~~i~~ 180 (241)
T 3gdh_A 159 -YATAETFDIRTMMSPDGFEIFR 180 (241)
T ss_dssp -GGGSSSBCTTTSCSSCHHHHHH
T ss_pred -hhhhHHHHHHhhcCCcceeHHH
Confidence 5555778999999999997774
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=6.9e-10 Score=109.53 Aligned_cols=105 Identities=17% Similarity=0.182 Sum_probs=75.5
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPS 267 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d 267 (392)
.+.+++.++.. ....+|||||||+|.++..++++ .++++|+ + .+++.+++ .+.+.++.++..-|+|+
T Consensus 191 ~~~~~~~~~~~-~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~--~~~v~~~~~d~~~~~p~ 261 (368)
T 3reo_A 191 MKKILEMYNGF-EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-P-----HVIQDAPA--FSGVEHLGGDMFDGVPK 261 (368)
T ss_dssp HHHHHTTCCTT-TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCC--CTTEEEEECCTTTCCCC
T ss_pred HHHHHHhcccc-cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-H-----HHHHhhhh--cCCCEEEecCCCCCCCC
Confidence 34455555411 22348999999999999999875 4566655 2 34433333 25677777776337775
Q ss_pred CccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 268 RAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+ |+|++..++++|.++. ..+|+++.++|||||++++..
T Consensus 262 ~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e 300 (368)
T 3reo_A 262 G--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAE 300 (368)
T ss_dssp C--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred C--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 4 9999999998887433 589999999999999999965
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.8e-10 Score=102.29 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=69.9
Q ss_pred ceEEEECCcCchHHHHHhhC---------CcEEEeCCccChHHHHHHHHHHcC-----CCcEEEEeccc-cCC----CCC
Q 036725 207 RTALDTGCGVASWGAYLFKK---------NVITMSFAPRDSHEAQVQFALERG-----VPAVIGVLGTI-KLP----YPS 267 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---------~v~~vd~s~~d~~~a~~~~a~~rg-----~~~~~~~~~~~-~lp----~~d 267 (392)
.+|||||||+|.++..+++. .++++|+++..+..+.... .+.+ .+++.+..++. ..+ .++
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 160 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENI-KRDKPELLKIDNFKIIHKNIYQVNEEEKKEL 160 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHH-HHHCGGGGSSTTEEEEECCGGGCCHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHH-HHcCccccccCCEEEEECChHhcccccCccC
Confidence 38999999999999988763 6899988876555444333 3334 45566666665 443 456
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
++||+|++...+.+. +.++.++|||||++++..++
T Consensus 161 ~~fD~I~~~~~~~~~-------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 161 GLFDAIHVGASASEL-------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp CCEEEEEECSBBSSC-------CHHHHHHEEEEEEEEEEEEE
T ss_pred CCcCEEEECCchHHH-------HHHHHHhcCCCcEEEEEEcc
Confidence 789999998776543 48899999999999998653
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.02 E-value=8e-10 Score=102.59 Aligned_cols=103 Identities=18% Similarity=0.200 Sum_probs=72.9
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHc-------CCCcEEEEeccc-c-CC--CCCCccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALER-------GVPAVIGVLGTI-K-LP--YPSRAFD 271 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~r-------g~~~~~~~~~~~-~-lp--~~d~sFD 271 (392)
.+|||||||+|.++..+++. .++++|+++.++..+..+....+ +++++.++.++. . ++ ++++++|
T Consensus 51 ~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~d 130 (246)
T 2vdv_E 51 VTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLS 130 (246)
T ss_dssp EEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCEE
T ss_pred CEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccccC
Confidence 38999999999999999875 59999998766555444333221 566676666665 3 56 7789999
Q ss_pred eEEecccccccccC--------hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 272 MAHCSRCLIPWSAN--------DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 272 lV~~~~~l~~~~~d--------~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.|+....- +|... ...++.++.++|||||+|++.+...
T Consensus 131 ~v~~~~p~-p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~ 176 (246)
T 2vdv_E 131 KMFFCFPD-PHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVK 176 (246)
T ss_dssp EEEEESCC-CC------CSSCCCHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred EEEEECCC-cccccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccH
Confidence 99864311 22111 0479999999999999999975443
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-09 Score=100.16 Aligned_cols=110 Identities=17% Similarity=0.059 Sum_probs=78.3
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccccCCC-CC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKLPY-PS 267 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~~lp~-~d 267 (392)
+..+.+.+....+. +|||+|||+|.++..++++ .++++|+++..+..+.. .....++ +.+.+...+....+ ++
T Consensus 80 ~~~~~~~~~~~~~~--~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~~~~~~~d~~~~~~~~ 156 (248)
T 2yvl_A 80 SFYIALKLNLNKEK--RVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQK-NLKKFNLGKNVKFFNVDFKDAEVPE 156 (248)
T ss_dssp HHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHH-HHHHTTCCTTEEEECSCTTTSCCCT
T ss_pred HHHHHHhcCCCCCC--EEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHH-HHHHcCCCCcEEEEEcChhhcccCC
Confidence 34555666544444 8999999999999998875 78899887654444333 2233454 55666666663344 67
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++||+|++.. .++..++.++.++|||||++++..+..
T Consensus 157 ~~~D~v~~~~------~~~~~~l~~~~~~L~~gG~l~~~~~~~ 193 (248)
T 2yvl_A 157 GIFHAAFVDV------REPWHYLEKVHKSLMEGAPVGFLLPTA 193 (248)
T ss_dssp TCBSEEEECS------SCGGGGHHHHHHHBCTTCEEEEEESSH
T ss_pred CcccEEEECC------cCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 8899999742 255678999999999999999987643
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.9e-09 Score=105.66 Aligned_cols=118 Identities=16% Similarity=0.032 Sum_probs=83.6
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhh-----CCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFK-----KNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~-----~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~ 262 (392)
+.+...++.+.....+. +|||+|||+|.++..++. ..++++|+++.++..+.. .+...++..+.+...+. .
T Consensus 189 ~~la~~l~~~~~~~~~~--~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~-n~~~~g~~~i~~~~~D~~~ 265 (354)
T 3tma_A 189 PVLAQALLRLADARPGM--RVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLARE-AALASGLSWIRFLRADARH 265 (354)
T ss_dssp HHHHHHHHHHTTCCTTC--CEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHH-HHHHTTCTTCEEEECCGGG
T ss_pred HHHHHHHHHHhCCCCCC--EEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHH-HHHHcCCCceEEEeCChhh
Confidence 34555666666544443 899999999999988876 479999998876665443 45556665555555555 7
Q ss_pred CCCCCCccceEEecccccccc-------cChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 263 LPYPSRAFDMAHCSRCLIPWS-------ANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~-------~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
++.+.++||+|+++....... .....++.++.++|||||.+++.++.
T Consensus 266 ~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 266 LPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp GGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred CccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 777778899999974331111 11257899999999999999998653
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=4.2e-10 Score=106.99 Aligned_cols=107 Identities=18% Similarity=0.166 Sum_probs=70.5
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-CcEEEeCCccChHHHHHHHHHHcCCC------cEEEE--ecc
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-NVITMSFAPRDSHEAQVQFALERGVP------AVIGV--LGT 260 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~v~~vd~s~~d~~~a~~~~a~~rg~~------~~~~~--~~~ 260 (392)
..+..+.+.....++ .+|||+|||+|.++..++++ .|+++|+++ +... +.++... ++.++ .++
T Consensus 69 ~KL~~i~~~~~~~~g--~~VLDlGcGtG~~s~~la~~~~V~gVD~s~-m~~~-----a~~~~~~~~~~~~~v~~~~~~~D 140 (276)
T 2wa2_A 69 AKLAWIDERGGVELK--GTVVDLGCGRGSWSYYAASQPNVREVKAYT-LGTS-----GHEKPRLVETFGWNLITFKSKVD 140 (276)
T ss_dssp HHHHHHHHTTSCCCC--EEEEEESCTTCHHHHHHHTSTTEEEEEEEC-CCCT-----TSCCCCCCCCTTGGGEEEECSCC
T ss_pred HHHHHHHHcCCCCCC--CEEEEeccCCCHHHHHHHHcCCEEEEECch-hhhh-----hhhchhhhhhcCCCeEEEeccCc
Confidence 334455554222233 48999999999999999986 899999987 4211 2122222 34445 455
Q ss_pred c-cCCCCCCccceEEecccccccc---cChH---HHHHHHHHhccCCe--EEEEEc
Q 036725 261 I-KLPYPSRAFDMAHCSRCLIPWS---ANDG---MYMMEIDRVLRPGG--YWVLSG 307 (392)
Q Consensus 261 ~-~lp~~d~sFDlV~~~~~l~~~~---~d~~---~~L~ei~RvLkPGG--~lvl~~ 307 (392)
. .+| +++||+|+|..+ .... .+.. .+|.++.|+||||| .|++..
T Consensus 141 ~~~l~--~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~ 193 (276)
T 2wa2_A 141 VTKME--PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKV 193 (276)
T ss_dssp GGGCC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred HhhCC--CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 4 555 789999999765 2211 0111 37899999999999 999864
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.8e-10 Score=103.30 Aligned_cols=96 Identities=17% Similarity=0.115 Sum_probs=72.8
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-c-CCCC-----CCccceE
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-K-LPYP-----SRAFDMA 273 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~-lp~~-----d~sFDlV 273 (392)
++|||||||+|..+..|++. .|+++|+++..+..+.. .+...++ +.+.++.++. . ++.. +++||+|
T Consensus 62 ~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 62 KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHP-YWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp SEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHH-HHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred CEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 38999999999999999873 69999999887766554 4444555 3566777665 3 2321 5789999
Q ss_pred EecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 274 HCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 274 ~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++... ..+...++.++.++|||||++++..
T Consensus 141 ~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 170 (242)
T 3r3h_A 141 FIDAD----KTNYLNYYELALKLVTPKGLIAIDN 170 (242)
T ss_dssp EEESC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCC----hHHhHHHHHHHHHhcCCCeEEEEEC
Confidence 98642 3356789999999999999999964
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-09 Score=97.71 Aligned_cols=96 Identities=17% Similarity=0.140 Sum_probs=69.5
Q ss_pred eEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-c-CC-CC---CCccceEEe
Q 036725 208 TALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-K-LP-YP---SRAFDMAHC 275 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~-lp-~~---d~sFDlV~~ 275 (392)
+|||||||+|.++..+++. .++++|+++..+..+.. .+.+.++. .+.++.++. . ++ ++ .++||+|++
T Consensus 61 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~ 139 (223)
T 3duw_A 61 NILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARS-NIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFI 139 (223)
T ss_dssp EEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEE
T ss_pred EEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEE
Confidence 8999999999999999876 68899888765554443 33444554 366666665 2 22 11 267999998
Q ss_pred cccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 276 SRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 276 ~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
... ......++.++.++|||||++++...
T Consensus 140 d~~----~~~~~~~l~~~~~~L~pgG~lv~~~~ 168 (223)
T 3duw_A 140 DAD----KQNNPAYFEWALKLSRPGTVIIGDNV 168 (223)
T ss_dssp CSC----GGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred cCC----cHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 643 23557899999999999999998753
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.2e-09 Score=98.42 Aligned_cols=95 Identities=14% Similarity=0.074 Sum_probs=73.7
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~ 281 (392)
.+|||+|||+|.++..++++ .|+++|+++..+..+. +.++..++.++.++.++. .++. .++||+|++....
T Consensus 121 ~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~-~n~~~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d~p~-- 196 (272)
T 3a27_A 121 EVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLC-ENIKLNKLNNVIPILADNRDVEL-KDVADRVIMGYVH-- 196 (272)
T ss_dssp CEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHH-HHHHHTTCSSEEEEESCGGGCCC-TTCEEEEEECCCS--
T ss_pred CEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCCEEEEECChHHcCc-cCCceEEEECCcc--
Confidence 38999999999999999875 6999999886655543 345556766666777776 5544 6789999987532
Q ss_pred cccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 282 WSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 282 ~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+...++.++.++|||||+++++..
T Consensus 197 ---~~~~~l~~~~~~LkpgG~l~~s~~ 220 (272)
T 3a27_A 197 ---KTHKFLDKTFEFLKDRGVIHYHET 220 (272)
T ss_dssp ---SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred ---cHHHHHHHHHHHcCCCCEEEEEEc
Confidence 556789999999999999998753
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=107.74 Aligned_cols=105 Identities=22% Similarity=0.215 Sum_probs=76.1
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPS 267 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d 267 (392)
...+++.++... ...+|||||||+|.++..++++ .++++|+ + .+++.+++ .+.+.++.++..-|+|.
T Consensus 189 ~~~~~~~~~~~~-~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~--~~~v~~~~~D~~~~~p~ 259 (364)
T 3p9c_A 189 TKKLLELYHGFE-GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-P-----HVISEAPQ--FPGVTHVGGDMFKEVPS 259 (364)
T ss_dssp HHHHHHHCCTTT-TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCC--CTTEEEEECCTTTCCCC
T ss_pred HHHHHHhccccc-CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-H-----HHHHhhhh--cCCeEEEeCCcCCCCCC
Confidence 445566655212 2348999999999999999875 4666665 2 23333332 25677777776337776
Q ss_pred CccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 268 RAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+ |+|++..++++|.++. ..+|+++.++|||||++++..
T Consensus 260 ~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e 298 (364)
T 3p9c_A 260 G--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQ 298 (364)
T ss_dssp C--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred C--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 5 9999999999887333 689999999999999999965
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.99 E-value=7.5e-10 Score=101.10 Aligned_cols=109 Identities=16% Similarity=0.237 Sum_probs=71.2
Q ss_pred HHHHHHHhhCC---CCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc
Q 036725 190 AYIEELASVIP---MDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI 261 (392)
Q Consensus 190 ~~i~~l~~~l~---~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~ 261 (392)
.....+...+. ...+ .+|||+|||+|.++..++++ .++++|+++.++..+. +.+++. +++.+..++.
T Consensus 57 ~~~~~i~~~l~~~~~~~~--~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~-~~~~~~--~~v~~~~~d~ 131 (227)
T 1g8a_A 57 KLGAAIMNGLKNFPIKPG--KSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEER--RNIVPILGDA 131 (227)
T ss_dssp HHHHHHHTTCCCCCCCTT--CEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSC--TTEEEEECCT
T ss_pred hHHHHHHhhHHhcCCCCC--CEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHH-HHHhcc--CCCEEEEccC
Confidence 34455543333 3333 38999999999999988854 6899988775443322 233222 4556666655
Q ss_pred -cC---CCCCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 262 -KL---PYPSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 262 -~l---p~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.. ....++||+|++... .. +. ..++.++.++|||||++++..
T Consensus 132 ~~~~~~~~~~~~~D~v~~~~~---~~-~~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 132 TKPEEYRALVPKVDVIFEDVA---QP-TQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp TCGGGGTTTCCCEEEEEECCC---ST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcchhhcccCCceEEEECCC---CH-hHHHHHHHHHHHhcCCCCEEEEEE
Confidence 31 112468999998643 22 33 455999999999999999973
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.7e-10 Score=105.99 Aligned_cols=111 Identities=14% Similarity=0.150 Sum_probs=71.9
Q ss_pred ccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-CcEEEeCCccChHHHHHHHHHHcCCC------cEEEE-
Q 036725 186 HGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-NVITMSFAPRDSHEAQVQFALERGVP------AVIGV- 257 (392)
Q Consensus 186 ~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~v~~vd~s~~d~~~a~~~~a~~rg~~------~~~~~- 257 (392)
......+..+.+.....++ .+|||||||+|.++..++++ .|+++|+++ +... +.+...+ ++.++
T Consensus 57 sR~a~KL~~i~~~~~~~~g--~~VLDlGcGtG~~s~~la~~~~V~gvD~s~-m~~~-----a~~~~~~~~~~~~~v~~~~ 128 (265)
T 2oxt_A 57 SRGTAKLAWMEERGYVELT--GRVVDLGCGRGGWSYYAASRPHVMDVRAYT-LGVG-----GHEVPRITESYGWNIVKFK 128 (265)
T ss_dssp STHHHHHHHHHHHTSCCCC--EEEEEESCTTSHHHHHHHTSTTEEEEEEEC-CCCS-----SCCCCCCCCBTTGGGEEEE
T ss_pred chHHHHHHHHHHcCCCCCC--CEEEEeCcCCCHHHHHHHHcCcEEEEECch-hhhh-----hhhhhhhhhccCCCeEEEe
Confidence 3334444555555222233 48999999999999999886 899999987 4211 1111112 34445
Q ss_pred -eccc-cCCCCCCccceEEecccccccc---cChH---HHHHHHHHhccCCe--EEEEEc
Q 036725 258 -LGTI-KLPYPSRAFDMAHCSRCLIPWS---ANDG---MYMMEIDRVLRPGG--YWVLSG 307 (392)
Q Consensus 258 -~~~~-~lp~~d~sFDlV~~~~~l~~~~---~d~~---~~L~ei~RvLkPGG--~lvl~~ 307 (392)
.++. .++ +++||+|+|..+ .... .+.. .+|.++.|+||||| .|++..
T Consensus 129 ~~~D~~~l~--~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 129 SRVDIHTLP--VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp CSCCTTTSC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cccCHhHCC--CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 4454 554 789999999755 2211 0111 37899999999999 999865
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.97 E-value=9e-10 Score=112.57 Aligned_cols=113 Identities=11% Similarity=0.181 Sum_probs=79.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~l 263 (392)
+.+.+.+.+.+....+ .+|||||||+|.++..+++. .|+++|+++ ++.. ..+.+...++ +.+.++.++. .+
T Consensus 144 ~~~~~~il~~l~~~~~--~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~-A~~~~~~~gl~~~v~~~~~d~~~~ 219 (480)
T 3b3j_A 144 GTYQRAILQNHTDFKD--KIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQH-AEVLVKSNNLTDRIVVIPGKVEEV 219 (480)
T ss_dssp HHHHHHHHHTGGGTTT--CEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHH-HHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHHHhhhhcCC--CEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHH-HHHHHHHcCCCCcEEEEECchhhC
Confidence 3455666666543333 38999999999999998876 689998865 4433 3334455566 5567777766 55
Q ss_pred CCCCCccceEEecccccccc-cChHHHHHHHHHhccCCeEEEEE
Q 036725 264 PYPSRAFDMAHCSRCLIPWS-ANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~-~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
+++ ++||+|++..++.++. ++....+.++.++|||||++++.
T Consensus 220 ~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 220 SLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp CCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred ccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 664 5899999986655554 23356778899999999999864
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.9e-09 Score=96.66 Aligned_cols=95 Identities=16% Similarity=0.236 Sum_probs=68.2
Q ss_pred eEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCc-EEEEeccc-c-CC--------------C
Q 036725 208 TALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPA-VIGVLGTI-K-LP--------------Y 265 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~~~~-~-lp--------------~ 265 (392)
+|||||||+|.++..+++. .++++|+++..+..+.. ...+.+... +.+..++. . ++ |
T Consensus 63 ~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f 141 (239)
T 2hnk_A 63 RIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARK-YWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDF 141 (239)
T ss_dssp EEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTT
T ss_pred EEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccc
Confidence 8999999999999988864 68999887755444333 333445543 55555554 2 22 3
Q ss_pred CC--CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 266 PS--RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 266 ~d--~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++ ++||+|++... ..+...++.++.++|||||++++..
T Consensus 142 ~~~~~~fD~I~~~~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 181 (239)
T 2hnk_A 142 AFGPSSIDLFFLDAD----KENYPNYYPLILKLLKPGGLLIADN 181 (239)
T ss_dssp CCSTTCEEEEEECSC----GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred cCCCCCcCEEEEeCC----HHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 33 78999998743 2355688999999999999999964
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.7e-09 Score=96.96 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=71.6
Q ss_pred ccHHHHHHHHHhhCCC-CCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-
Q 036725 186 HGADAYIEELASVIPM-DSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI- 261 (392)
Q Consensus 186 ~~~~~~i~~l~~~l~~-~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~- 261 (392)
.++...+.++.+.... .++ .+|||+|||+|.++..++++ .|+++|+++.. ..+.+.++.++.
T Consensus 7 ~Ra~~KL~ei~~~~~~~~~g--~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~------------~~~~v~~~~~D~~ 72 (191)
T 3dou_A 7 SRAAFKLEFLLDRYRVVRKG--DAVIEIGSSPGGWTQVLNSLARKIISIDLQEME------------EIAGVRFIRCDIF 72 (191)
T ss_dssp SHHHHHHHHHHHHHCCSCTT--CEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC------------CCTTCEEEECCTT
T ss_pred CcHHHHHHHHHHHcCCCCCC--CEEEEEeecCCHHHHHHHHcCCcEEEEeccccc------------cCCCeEEEEcccc
Confidence 3344445555554443 233 38999999999999999987 79999998742 124455566665
Q ss_pred cCCC--------C---CCccceEEeccccc---ccccC-------hHHHHHHHHHhccCCeEEEEEc
Q 036725 262 KLPY--------P---SRAFDMAHCSRCLI---PWSAN-------DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 262 ~lp~--------~---d~sFDlV~~~~~l~---~~~~d-------~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..+. . .++||+|++..... .+..+ ...++.++.++|||||.|++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~ 139 (191)
T 3dou_A 73 KETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ 139 (191)
T ss_dssp SSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 3331 1 14899999964321 01111 1468899999999999999864
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=105.55 Aligned_cols=96 Identities=18% Similarity=0.213 Sum_probs=65.7
Q ss_pred ceEEEECCcCchHHHHHhhC-CcEEEeC----CccChHHHHHHHHHHcCCCcEEEEec-cc-cCCCCCCccceEEecccc
Q 036725 207 RTALDTGCGVASWGAYLFKK-NVITMSF----APRDSHEAQVQFALERGVPAVIGVLG-TI-KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-~v~~vd~----s~~d~~~a~~~~a~~rg~~~~~~~~~-~~-~lp~~d~sFDlV~~~~~l 279 (392)
.+|||||||+|.++..++++ .|+++|+ ++.++.. . .....+.+.+.++.+ +. .+ +.++||+|+|..+.
T Consensus 84 ~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~--~-~~~~~~~~~v~~~~~~D~~~l--~~~~fD~V~sd~~~ 158 (305)
T 2p41_A 84 GKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEP--I-PMSTYGWNLVRLQSGVDVFFI--PPERCDTLLCDIGE 158 (305)
T ss_dssp EEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC--C-CCCSTTGGGEEEECSCCTTTS--CCCCCSEEEECCCC
T ss_pred CEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHH--H-HhhhcCCCCeEEEeccccccC--CcCCCCEEEECCcc
Confidence 48999999999999999987 7999998 3322210 0 011112356777776 44 44 46789999997654
Q ss_pred c--ccccChH---HHHHHHHHhccCCeEEEEEc
Q 036725 280 I--PWSANDG---MYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 280 ~--~~~~d~~---~~L~ei~RvLkPGG~lvl~~ 307 (392)
. ++..+.. .+|.++.++|||||.|++..
T Consensus 159 ~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 159 SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 2 2211222 57899999999999999865
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-09 Score=98.77 Aligned_cols=94 Identities=12% Similarity=0.117 Sum_probs=69.1
Q ss_pred eEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc--cCCCCCCccceEEecccc
Q 036725 208 TALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI--KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~--~lp~~d~sFDlV~~~~~l 279 (392)
+|||||||+|..+..|++. .++++|+++..+..+.... ...++ +.+.++.++. .++..++ ||+|++...
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~- 135 (210)
T 3c3p_A 59 LVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRML-HDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD- 135 (210)
T ss_dssp EEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHH-HHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT-
T ss_pred EEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHH-HHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC-
Confidence 8999999999999999865 6899998876555444332 33344 3455666655 3455456 999998632
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 280 IPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 280 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..+...+++++.++|||||++++..
T Consensus 136 ---~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 136 ---VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp ---TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred ---hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 2366789999999999999999864
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-09 Score=104.03 Aligned_cols=102 Identities=14% Similarity=0.192 Sum_probs=69.3
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHH---HcCCCcEEEEeccc-cCCC--CCCccceEEec
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFAL---ERGVPAVIGVLGTI-KLPY--PSRAFDMAHCS 276 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~---~rg~~~~~~~~~~~-~lp~--~d~sFDlV~~~ 276 (392)
.+|||||||+|.++..+++. .++++|+++..+..+...+.. ....+.+.++.++. .++. ++++||+|++.
T Consensus 97 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~d 176 (304)
T 3bwc_A 97 ERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIID 176 (304)
T ss_dssp CEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEEE
T ss_pred CeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEEC
Confidence 48999999999999999876 688998877554444332211 11234566666665 4432 47899999997
Q ss_pred ccccccccCh----HHHHHHHHHhccCCeEEEEEcCC
Q 036725 277 RCLIPWSAND----GMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 277 ~~l~~~~~d~----~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
... +..... ..+++++.|+|||||++++....
T Consensus 177 ~~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 212 (304)
T 3bwc_A 177 TTD-PAGPASKLFGEAFYKDVLRILKPDGICCNQGES 212 (304)
T ss_dssp CC----------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCC-ccccchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 544 332122 58899999999999999997543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.9e-09 Score=101.71 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=77.7
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccccCCCC
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKLPYP 266 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~~lp~~ 266 (392)
..+++.+...++. +|||+|||+|.++..++++ .++++|+++..+..+.. .+...++ +.+.+..++....++
T Consensus 102 ~~i~~~~~~~~~~--~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~ 178 (277)
T 1o54_A 102 SFIAMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAES-NLTKWGLIERVTIKVRDISEGFD 178 (277)
T ss_dssp HHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH-HHHHTTCGGGEEEECCCGGGCCS
T ss_pred HHHHHHhCCCCCC--EEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH-HHHHcCCCCCEEEEECCHHHccc
Confidence 4555666654554 8999999999999888764 58888887654444333 3333454 456667776633367
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+++||+|++.. +++..++.++.++|+|||.+++..+.
T Consensus 179 ~~~~D~V~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 179 EKDVDALFLDV------PDPWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp CCSEEEEEECC------SCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred CCccCEEEECC------cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 78999999842 25567899999999999999998754
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.94 E-value=5e-09 Score=101.23 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=75.2
Q ss_pred hCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccc
Q 036725 198 VIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFD 271 (392)
Q Consensus 198 ~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFD 271 (392)
.+...++. +|||+|||+|..+..|++. .|+++|+++..+..+.. .+...+++++.++.++. .++..+++||
T Consensus 113 ~l~~~~g~--~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~-~~~~~g~~~v~~~~~D~~~~~~~~~~fD 189 (315)
T 1ixk_A 113 ALDPKPGE--IVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRL-NLSRLGVLNVILFHSSSLHIGELNVEFD 189 (315)
T ss_dssp HHCCCTTC--EEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHH-HHHHHTCCSEEEESSCGGGGGGGCCCEE
T ss_pred HhCCCCCC--EEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH-HHHHhCCCeEEEEECChhhcccccccCC
Confidence 33433443 8999999999999998863 58999887765544333 34445766676677665 5554467899
Q ss_pred eEEecc------cccc-------cccC--------hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 272 MAHCSR------CLIP-------WSAN--------DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 272 lV~~~~------~l~~-------~~~d--------~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+|++.. ++.+ |..+ ...+|.++.++|||||++++++...
T Consensus 190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 999742 1111 1100 1488999999999999999986544
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.94 E-value=2.9e-09 Score=103.47 Aligned_cols=111 Identities=21% Similarity=0.196 Sum_probs=71.8
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHc----------CCCcEEE
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALER----------GVPAVIG 256 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~r----------g~~~~~~ 256 (392)
...+++.+...++. +|||+|||+|.++..+++. .++++|+++..+..+..+..... ...++.+
T Consensus 94 ~~~~l~~l~~~~g~--~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~ 171 (336)
T 2b25_A 94 INMILSMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF 171 (336)
T ss_dssp HHHHHHHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred HHHHHHhcCCCCCC--EEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEE
Confidence 34444555544444 8999999999999988864 58999888765555444333211 1245666
Q ss_pred Eeccc-cC--CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 257 VLGTI-KL--PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 257 ~~~~~-~l--p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
..++. .+ ++++++||+|++... ++..++.++.++|||||.+++..+..
T Consensus 172 ~~~d~~~~~~~~~~~~fD~V~~~~~------~~~~~l~~~~~~LkpgG~lv~~~~~~ 222 (336)
T 2b25_A 172 IHKDISGATEDIKSLTFDAVALDML------NPHVTLPVFYPHLKHGGVCAVYVVNI 222 (336)
T ss_dssp EESCTTCCC-------EEEEEECSS------STTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred EECChHHcccccCCCCeeEEEECCC------CHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 66665 44 567788999998532 33347999999999999999876543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.93 E-value=8.1e-10 Score=101.38 Aligned_cols=95 Identities=14% Similarity=0.198 Sum_probs=69.2
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-c-CCCC--CCccceEEeccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-K-LPYP--SRAFDMAHCSRC 278 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~-lp~~--d~sFDlV~~~~~ 278 (392)
+|||+|||+|.++..+++. .++++|+++..+..+.. .....+. +.+.+..++. . ++.. +++||+|++...
T Consensus 57 ~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~ 135 (233)
T 2gpy_A 57 RILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHK-HVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDAA 135 (233)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHH-HHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEGG
T ss_pred EEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECCC
Confidence 8999999999999988875 68889887654444333 2333454 3466666665 3 2432 578999998654
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 279 LIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 279 l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. .+...++.++.++|||||++++..
T Consensus 136 ~----~~~~~~l~~~~~~L~pgG~lv~~~ 160 (233)
T 2gpy_A 136 K----GQYRRFFDMYSPMVRPGGLILSDN 160 (233)
T ss_dssp G----SCHHHHHHHHGGGEEEEEEEEEET
T ss_pred H----HHHHHHHHHHHHHcCCCeEEEEEc
Confidence 3 266789999999999999999974
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.3e-09 Score=104.93 Aligned_cols=111 Identities=17% Similarity=0.175 Sum_probs=76.7
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~l 263 (392)
+.|.+.|.+......+. +|||||||+|.++...++. +|+++|.++ +. ..+.+.++.+++. .+.++.++. .+
T Consensus 69 ~aY~~Ai~~~~~~~~~k--~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~-~~a~~~~~~n~~~~~i~~i~~~~~~~ 144 (376)
T 4hc4_A 69 DAYRLGILRNWAALRGK--TVLDVGAGTGILSIFCAQAGARRVYAVEASA-IW-QQAREVVRFNGLEDRVHVLPGPVETV 144 (376)
T ss_dssp HHHHHHHHTTHHHHTTC--EEEEETCTTSHHHHHHHHTTCSEEEEEECST-TH-HHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred HHHHHHHHhCHHhcCCC--EEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HH-HHHHHHHHHcCCCceEEEEeeeeeee
Confidence 44555554332222343 8999999999998877775 699999885 44 4445566777764 466666665 66
Q ss_pred CCCCCccceEEecc---cccccccChHHHHHHHHHhccCCeEEEE
Q 036725 264 PYPSRAFDMAHCSR---CLIPWSANDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 264 p~~d~sFDlV~~~~---~l~~~~~d~~~~L~ei~RvLkPGG~lvl 305 (392)
.+| ++||+|++-. ++ ........++....|.|||||.++-
T Consensus 145 ~lp-e~~DvivsE~~~~~l-~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 145 ELP-EQVDAIVSEWMGYGL-LHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp CCS-SCEEEEECCCCBTTB-TTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred cCC-ccccEEEeecccccc-cccchhhhHHHHHHhhCCCCceECC
Confidence 665 6799999842 23 2222457889999999999999875
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.1e-09 Score=93.50 Aligned_cols=90 Identities=14% Similarity=0.167 Sum_probs=62.6
Q ss_pred ceEEEECCcCchHHHHHhhC-------------CcEEEeCCccChHHHHHHHHHHcCCCcEEEE-eccc-cCC-------
Q 036725 207 RTALDTGCGVASWGAYLFKK-------------NVITMSFAPRDSHEAQVQFALERGVPAVIGV-LGTI-KLP------- 264 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-------------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~-~~~~-~lp------- 264 (392)
.+|||+|||+|.++..|+++ .++++|+++.. ..+.+.+. .++. ..+
T Consensus 24 ~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~------------~~~~~~~~~~~d~~~~~~~~~~~~ 91 (196)
T 2nyu_A 24 LRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF------------PLEGATFLCPADVTDPRTSQRILE 91 (196)
T ss_dssp CEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC------------CCTTCEEECSCCTTSHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc------------cCCCCeEEEeccCCCHHHHHHHHH
Confidence 38999999999999998864 38899988732 12333444 4443 221
Q ss_pred -CCCCccceEEeccccc---ccccCh-------HHHHHHHHHhccCCeEEEEEcC
Q 036725 265 -YPSRAFDMAHCSRCLI---PWSAND-------GMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 265 -~~d~sFDlV~~~~~l~---~~~~d~-------~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+++++||+|++..+++ ++..+. ..++.++.++|||||.|++...
T Consensus 92 ~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 92 VLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 3457899999865432 221122 4789999999999999999753
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.92 E-value=7.5e-09 Score=100.94 Aligned_cols=100 Identities=18% Similarity=0.197 Sum_probs=70.3
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHH-cC--CCcEEEEeccc-c-C-CCCCCccceEEec
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALE-RG--VPAVIGVLGTI-K-L-PYPSRAFDMAHCS 276 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~-rg--~~~~~~~~~~~-~-l-p~~d~sFDlV~~~ 276 (392)
++|||||||+|.++..|+++ .|+++|+++..+..+...+... .+ .+.+.++.++. . + .+++++||+|++.
T Consensus 122 ~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d 201 (334)
T 1xj5_A 122 KKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVD 201 (334)
T ss_dssp CEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEEC
T ss_pred CEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEEC
Confidence 48999999999999999976 6889988776555444333221 12 24566666665 3 2 2456899999986
Q ss_pred ccccccc--cC--hHHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLIPWS--AN--DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~~~~--~d--~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
... ++. .+ ...+++++.++|||||+|++..
T Consensus 202 ~~~-p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 235 (334)
T 1xj5_A 202 SSD-PIGPAKELFEKPFFQSVARALRPGGVVCTQA 235 (334)
T ss_dssp CCC-TTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCC-ccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 432 221 11 3689999999999999999974
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-09 Score=101.25 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=67.5
Q ss_pred eEEEECCcCchHHHHHhhC--------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c---CCCCC-CccceEE
Q 036725 208 TALDTGCGVASWGAYLFKK--------NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K---LPYPS-RAFDMAH 274 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~---lp~~d-~sFDlV~ 274 (392)
+|||||||+|..+..|++. .|+++|+++.++..+. ... +++.++.++. . +++.+ .+||+|+
T Consensus 84 ~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~-----~~~-~~v~~~~gD~~~~~~l~~~~~~~fD~I~ 157 (236)
T 2bm8_A 84 TIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDM-ENITLHQGDCSDLTTFEHLREMAHPLIF 157 (236)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGC-TTEEEEECCSSCSGGGGGGSSSCSSEEE
T ss_pred EEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh-----ccC-CceEEEECcchhHHHHHhhccCCCCEEE
Confidence 8999999999999988752 6999999887654432 222 4566666665 4 35434 4799999
Q ss_pred ecccccccccChHHHHHHHHH-hccCCeEEEEEc
Q 036725 275 CSRCLIPWSANDGMYMMEIDR-VLRPGGYWVLSG 307 (392)
Q Consensus 275 ~~~~l~~~~~d~~~~L~ei~R-vLkPGG~lvl~~ 307 (392)
+... | .+...+|.++.| +|||||++++..
T Consensus 158 ~d~~--~--~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 158 IDNA--H--ANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp EESS--C--SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred ECCc--h--HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 8643 2 266789999998 999999999965
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3.7e-09 Score=103.73 Aligned_cols=108 Identities=17% Similarity=0.203 Sum_probs=76.8
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--C--cEEEeCCccChHHHHHHHHHH----cCCCcEEEEeccc-
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--N--VITMSFAPRDSHEAQVQFALE----RGVPAVIGVLGTI- 261 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~--v~~vd~s~~d~~~a~~~~a~~----rg~~~~~~~~~~~- 261 (392)
....+++.+..... ++|||||||+|.++..++++ + ++..|+ | ..++.|++ .+.+.+.++.++.
T Consensus 167 ~~~~~~~~~~~~~~--~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p-----~v~~~a~~~~~~~~~~rv~~~~gD~~ 238 (353)
T 4a6d_A 167 NGRSVLTAFDLSVF--PLMCDLGGGAGALAKECMSLYPGCKITVFDI-P-----EVVWTAKQHFSFQEEEQIDFQEGDFF 238 (353)
T ss_dssp HHHHHHHSSCGGGC--SEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-H-----HHHHHHHHHSCC--CCSEEEEESCTT
T ss_pred HHHHHHHhcCcccC--CeEEeeCCCCCHHHHHHHHhCCCceeEeccC-H-----HHHHHHHHhhhhcccCceeeecCccc
Confidence 34555565553333 48999999999999999987 3 444444 2 23344443 2346678888876
Q ss_pred cCCCCCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEcC
Q 036725 262 KLPYPSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 262 ~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p 308 (392)
..|.+ .+|+|++..++++|.++. ..+|+++++.|+|||.+++...
T Consensus 239 ~~~~~--~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~ 284 (353)
T 4a6d_A 239 KDPLP--EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIES 284 (353)
T ss_dssp TSCCC--CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred cCCCC--CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 45544 479999999999998433 5899999999999999999753
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-09 Score=105.80 Aligned_cols=91 Identities=14% Similarity=0.187 Sum_probs=70.4
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEeccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~ 282 (392)
.+|||||||+|.++..++++ +++++|+ + .+++.+++. +.+.++.++..-++++ ||+|++..++++|
T Consensus 190 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~~--~~v~~~~~d~~~~~p~--~D~v~~~~~lh~~ 259 (352)
T 1fp2_A 190 ESIVDVGGGTGTTAKIICETFPKLKCIVFDR-P-----QVVENLSGS--NNLTYVGGDMFTSIPN--ADAVLLKYILHNW 259 (352)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H-----HHHTTCCCB--TTEEEEECCTTTCCCC--CSEEEEESCGGGS
T ss_pred ceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-H-----HHHhhcccC--CCcEEEeccccCCCCC--ccEEEeehhhccC
Confidence 48999999999999999865 5777766 4 344444332 4466677766336653 9999999999888
Q ss_pred ccChH--HHHHHHHHhccC---CeEEEEEcC
Q 036725 283 SANDG--MYMMEIDRVLRP---GGYWVLSGP 308 (392)
Q Consensus 283 ~~d~~--~~L~ei~RvLkP---GG~lvl~~p 308 (392)
. +.. .+|+++.|+||| ||++++..+
T Consensus 260 ~-d~~~~~~l~~~~~~L~p~~~gG~l~i~e~ 289 (352)
T 1fp2_A 260 T-DKDCLRILKKCKEAVTNDGKRGKVTIIDM 289 (352)
T ss_dssp C-HHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred C-HHHHHHHHHHHHHhCCCCCCCcEEEEEEe
Confidence 7 555 999999999999 999999753
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.6e-09 Score=98.64 Aligned_cols=109 Identities=12% Similarity=0.103 Sum_probs=76.5
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI- 261 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~- 261 (392)
..++..++...+ + ++|||||||+|..+..|++. .++++|+++..+..+.. ...+.++ +.+.++.++.
T Consensus 68 ~~ll~~l~~~~~---~--~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~-~~~~~g~~~~i~~~~gda~ 141 (247)
T 1sui_A 68 GQFLSMLLKLIN---A--KNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLP-VIKKAGVDHKIDFREGPAL 141 (247)
T ss_dssp HHHHHHHHHHTT---C--CEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHH-HHHHTTCGGGEEEEESCHH
T ss_pred HHHHHHHHHhhC---c--CEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCCeEEEECCHH
Confidence 445555554432 2 38999999999999988764 68999998866555443 3344555 3566666664
Q ss_pred c-CCC------CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 262 K-LPY------PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 262 ~-lp~------~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. ++. ++++||+|++... ..+...++.++.++|||||++++..
T Consensus 142 ~~l~~l~~~~~~~~~fD~V~~d~~----~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 142 PVLDEMIKDEKNHGSYDFIFVDAD----KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp HHHHHHHHSGGGTTCBSEEEECSC----STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred HHHHHHHhccCCCCCEEEEEEcCc----hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 2 332 2578999998642 3356789999999999999999863
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-09 Score=100.41 Aligned_cols=117 Identities=14% Similarity=0.144 Sum_probs=70.6
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCc-EEEEeccc-c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPA-VIGVLGTI-K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~~~~-~ 262 (392)
..+++.+++.+........+|||+|||+|.++..++.+ .++++|+++.++..+.. .+...++.. +.++.++. .
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~v~~~~~d~~~ 127 (254)
T 2h00_A 49 IHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKK-NVEQNNLSDLIKVVKVPQKT 127 (254)
T ss_dssp HHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCTTC
T ss_pred HHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHH-HHHHcCCCccEEEEEcchhh
Confidence 33455555544321112348999999999999888764 79999998876665544 334455543 56666553 2
Q ss_pred C---CCC---CCccceEEeccccccccc--------------ChHHHHHHHHHhccCCeEEEEE
Q 036725 263 L---PYP---SRAFDMAHCSRCLIPWSA--------------NDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 263 l---p~~---d~sFDlV~~~~~l~~~~~--------------d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
. +++ +++||+|+++..+++... ....++.++.|+|||||.+.+.
T Consensus 128 ~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 128 LLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp SSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred hhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence 1 454 368999999855433220 1124567888999998888764
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-08 Score=93.78 Aligned_cols=95 Identities=20% Similarity=0.201 Sum_probs=69.2
Q ss_pred eEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-----cCCCCC--CccceEE
Q 036725 208 TALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-----KLPYPS--RAFDMAH 274 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-----~lp~~d--~sFDlV~ 274 (392)
+|||||||+|..+..+++. .++++|+++..+..+.. ...+.++ +.+.+..++. .++..+ ++||+|+
T Consensus 75 ~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~ 153 (232)
T 3cbg_A 75 QVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKK-YWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIF 153 (232)
T ss_dssp EEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHH-HHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEE
T ss_pred EEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEE
Confidence 8999999999999999875 68899887765544433 2333454 3455666653 233434 7899999
Q ss_pred ecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 275 CSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 275 ~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+... ..+...++.++.++|||||++++..
T Consensus 154 ~d~~----~~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 154 IDAD----KRNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp ECSC----GGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred ECCC----HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 8643 2356789999999999999999964
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-08 Score=92.90 Aligned_cols=95 Identities=20% Similarity=0.160 Sum_probs=69.3
Q ss_pred eEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-c-CC-CCC----CccceEE
Q 036725 208 TALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-K-LP-YPS----RAFDMAH 274 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~-lp-~~d----~sFDlV~ 274 (392)
+|||||||+|.++..+++. .++++|+++..+..+.. .....+. ..+.++.++. . ++ +++ ++||+|+
T Consensus 72 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~-~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~ 150 (229)
T 2avd_A 72 KALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRP-LWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAV 150 (229)
T ss_dssp EEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHH-HHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEE
T ss_pred EEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEE
Confidence 8999999999999999874 68999998865555443 3344454 4566666654 2 11 111 7899999
Q ss_pred ecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 275 CSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 275 ~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+... ..+...++.++.++|||||++++..
T Consensus 151 ~d~~----~~~~~~~l~~~~~~L~pgG~lv~~~ 179 (229)
T 2avd_A 151 VDAD----KENCSAYYERCLQLLRPGGILAVLR 179 (229)
T ss_dssp ECSC----STTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred ECCC----HHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 8643 3355789999999999999999964
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-08 Score=100.30 Aligned_cols=112 Identities=18% Similarity=0.134 Sum_probs=74.0
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KL 263 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~l 263 (392)
.+...+..+. ...+ .+|||+|||+|.++..++.. .++++|+++.++..+.. .+...++ +.+.+..++. .+
T Consensus 205 ~la~~l~~~~-~~~~--~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~-n~~~~gl~~~i~~~~~D~~~~ 280 (373)
T 3tm4_A 205 SIANAMIELA-ELDG--GSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEM-NALAAGVLDKIKFIQGDATQL 280 (373)
T ss_dssp HHHHHHHHHH-TCCS--CCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHH-HHHHTTCGGGCEEEECCGGGG
T ss_pred HHHHHHHHhh-cCCC--CEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH-HHHHcCCCCceEEEECChhhC
Confidence 3444444444 3333 38999999999999999875 68999998876665544 4445565 3455555555 88
Q ss_pred CCCCCccceEEecccccccc------cCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 264 PYPSRAFDMAHCSRCLIPWS------AND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~------~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++++++||+|+++..+.... .+. ..++.++.|+| ||.+++..
T Consensus 281 ~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~ 329 (373)
T 3tm4_A 281 SQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFIT 329 (373)
T ss_dssp GGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEE
T ss_pred CcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 88889999999975432111 111 57889999999 45544443
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=8.1e-09 Score=98.35 Aligned_cols=119 Identities=17% Similarity=0.160 Sum_probs=80.3
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCc-EEEEecccc
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPA-VIGVLGTIK 262 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~~~~~ 262 (392)
..+.+++.+.+.+....+ .+|||+|||+|.++..++.. .++++|+++..+..+.. .+...++.. +.++.++..
T Consensus 107 ~te~lv~~~l~~~~~~~~--~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~-n~~~~~l~~~v~~~~~D~~ 183 (284)
T 1nv8_A 107 ETEELVELALELIRKYGI--KTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARK-NAERHGVSDRFFVRKGEFL 183 (284)
T ss_dssp THHHHHHHHHHHHHHHTC--CEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHH-HHHHTTCTTSEEEEESSTT
T ss_pred hHHHHHHHHHHHhcccCC--CEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECcch
Confidence 345667776666542222 38999999999999998865 78999988765555443 444456653 666777663
Q ss_pred CCCCCCcc---ceEEecccccc----------cc--------cChHHHHHHHH-HhccCCeEEEEEcCC
Q 036725 263 LPYPSRAF---DMAHCSRCLIP----------WS--------ANDGMYMMEID-RVLRPGGYWVLSGPL 309 (392)
Q Consensus 263 lp~~d~sF---DlV~~~~~l~~----------~~--------~d~~~~L~ei~-RvLkPGG~lvl~~p~ 309 (392)
-+++ ++| |+|+++.-.+. +. .+...+++++. +.|+|||++++..+.
T Consensus 184 ~~~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~ 251 (284)
T 1nv8_A 184 EPFK-EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 251 (284)
T ss_dssp GGGG-GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred hhcc-cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc
Confidence 3333 579 99999732211 10 01127899999 999999999997643
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=7.5e-10 Score=115.47 Aligned_cols=98 Identities=17% Similarity=0.133 Sum_probs=73.8
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC--CCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL--PYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l--p~~d~sFDlV~~~~~l~~ 281 (392)
.+|||||||.|.++..|+++ .|+|+|+++.++..+.. .|.+.+.-.+.+...+. ++ ++++++||+|+|..+++|
T Consensus 68 ~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~eh 146 (569)
T 4azs_A 68 LNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRA-LAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFHH 146 (569)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHHH
T ss_pred CeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHH-HHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchhc
Confidence 48999999999999999998 79999998876666544 45556644555666655 55 567889999999999998
Q ss_pred cccChH--HHHHHHHHhccCCeEEEEE
Q 036725 282 WSANDG--MYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 282 ~~~d~~--~~L~ei~RvLkPGG~lvl~ 306 (392)
.. ++. ..+..+.+.|+++|..++.
T Consensus 147 v~-~~~~~~~~~~~~~tl~~~~~~~~~ 172 (569)
T 4azs_A 147 IV-HLHGIDEVKRLLSRLADVTQAVIL 172 (569)
T ss_dssp HH-HHHCHHHHHHHHHHHHHHSSEEEE
T ss_pred CC-CHHHHHHHHHHHHHhccccceeeE
Confidence 87 553 3455677778887766553
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.86 E-value=5.8e-09 Score=98.64 Aligned_cols=102 Identities=14% Similarity=0.004 Sum_probs=73.3
Q ss_pred eEEEECCcCchHHHHHhh-----CCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC----CCCccceEEecc
Q 036725 208 TALDTGCGVASWGAYLFK-----KNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY----PSRAFDMAHCSR 277 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~-----~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~----~d~sFDlV~~~~ 277 (392)
+|||+|||+|..+..+++ ..|+++|+++..+..+ .+.+...+++++.++.++. .++. .+++||+|++..
T Consensus 86 ~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~-~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~ 164 (274)
T 3ajd_A 86 FILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKAL-KSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDA 164 (274)
T ss_dssp EEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHH-HHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHH-HHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcC
Confidence 899999999999998886 2689999887655443 3344555766666666665 4443 367899999862
Q ss_pred ccc-----------------ccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 278 CLI-----------------PWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 278 ~l~-----------------~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
-.. ........+|.++.++|||||++++++...
T Consensus 165 Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 165 PCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp CCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 110 011244789999999999999999987554
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.83 E-value=9.1e-09 Score=97.54 Aligned_cols=101 Identities=12% Similarity=0.092 Sum_probs=70.8
Q ss_pred cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHH-cC--CCcEEEEeccc-c-CCCCCCccceEEec
Q 036725 206 VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALE-RG--VPAVIGVLGTI-K-LPYPSRAFDMAHCS 276 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~-rg--~~~~~~~~~~~-~-lp~~d~sFDlV~~~ 276 (392)
.++|||||||+|.++..++++ .++++|+++..+..+...+..- .+ .+.+.++.++. . ++..+++||+|++.
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d 155 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD 155 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEEC
Confidence 348999999999999999876 6889988775544443322211 12 25566666665 2 44456889999996
Q ss_pred ccccccccC----hHHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLIPWSAN----DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~~~~~d----~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
... ++... ...+++++.++|+|||++++..
T Consensus 156 ~~~-~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 156 STE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp CSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 433 33211 2579999999999999999975
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.82 E-value=6.9e-09 Score=101.10 Aligned_cols=101 Identities=8% Similarity=-0.047 Sum_probs=70.3
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCc--EEEEeccc-cCC-C---CCCccceEEecc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPA--VIGVLGTI-KLP-Y---PSRAFDMAHCSR 277 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~--~~~~~~~~-~lp-~---~d~sFDlV~~~~ 277 (392)
.+|||+|||+|.++..+++. .|+++|+++.++..+.. .+...++.. +.++.++. .+. . .+++||+|++..
T Consensus 155 ~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~-n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP 233 (332)
T 2igt_A 155 LKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKE-NQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 233 (332)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHH-HHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred CcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence 38999999999999999887 68899888765555443 333445543 66666665 322 1 156899999853
Q ss_pred cc---------cccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 278 CL---------IPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 278 ~l---------~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
-. .+...+...++.++.++|||||+|+++..
T Consensus 234 P~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 234 PKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp CSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 21 11222346899999999999999887653
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.1e-08 Score=91.19 Aligned_cols=109 Identities=15% Similarity=0.049 Sum_probs=77.7
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccccCCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKLPY 265 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~~lp~ 265 (392)
.++.+.++++ ++ .+|||||||+|.++..+++. .|+++|+++..+..+. +.+...++. .+.+..++.--++
T Consensus 5 RL~~l~~~v~--~g--~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~-~N~~~~gl~~~i~~~~~d~l~~l 79 (225)
T 3kr9_A 5 RLELVASFVS--QG--AILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAV-KNVEAHGLKEKIQVRLANGLAAF 79 (225)
T ss_dssp HHHHHHTTSC--TT--EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHH-HHHHHTTCTTTEEEEECSGGGGC
T ss_pred HHHHHHHhCC--CC--CEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHH-HHHHHcCCCceEEEEECchhhhc
Confidence 4556666665 33 38999999999999999986 5899999876555443 355566765 4777777763344
Q ss_pred CCC-ccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 266 PSR-AFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 266 ~d~-sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+.+ .||+|+...+. ..-...+|.+..+.|+++|+|++..
T Consensus 80 ~~~~~~D~IviaG~G---g~~i~~Il~~~~~~L~~~~~lVlq~ 119 (225)
T 3kr9_A 80 EETDQVSVITIAGMG---GRLIARILEEGLGKLANVERLILQP 119 (225)
T ss_dssp CGGGCCCEEEEEEEC---HHHHHHHHHHTGGGCTTCCEEEEEE
T ss_pred ccCcCCCEEEEcCCC---hHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 444 69998865432 1123678999999999999999964
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.4e-08 Score=91.19 Aligned_cols=110 Identities=15% Similarity=0.034 Sum_probs=78.6
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-cC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KL 263 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~l 263 (392)
..++.+.++++ ++ .+|||||||+|.++..+++. .|+++|+++..+..+.. .+...++. .+.+..++. ..
T Consensus 10 ~RL~~i~~~v~--~g--~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~-N~~~~gl~~~I~~~~gD~l~~ 84 (230)
T 3lec_A 10 KRLQKVANYVP--KG--ARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALK-NVSEHGLTSKIDVRLANGLSA 84 (230)
T ss_dssp HHHHHHHTTSC--TT--EEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHH-HHHHTTCTTTEEEEECSGGGG
T ss_pred HHHHHHHHhCC--CC--CEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEECchhhc
Confidence 34566677765 33 38999999999999999986 58999998865555443 44555654 477777776 44
Q ss_pred CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..+++.||+|+...+.- .-...+|.+..+.|+++|+|+++.
T Consensus 85 ~~~~~~~D~IviaGmGg---~lI~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 85 FEEADNIDTITICGMGG---RLIADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp CCGGGCCCEEEEEEECH---HHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred cccccccCEEEEeCCch---HHHHHHHHHHHHHhCcCCEEEEEC
Confidence 44444799988654321 123678899999999999999975
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.7e-08 Score=97.83 Aligned_cols=103 Identities=12% Similarity=0.040 Sum_probs=73.9
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC--cEEEEeccc-c-CCC---CCCccceEEec
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI-K-LPY---PSRAFDMAHCS 276 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~--~~~~~~~~~-~-lp~---~d~sFDlV~~~ 276 (392)
.+|||+|||+|.++..++++ .|+++|+++.++..+.. .++..++. ++.++.++. . ++. ..++||+|++.
T Consensus 214 ~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~-N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~D 292 (385)
T 2b78_A 214 KTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLA-HFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIID 292 (385)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHH-HHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEEC
Confidence 38999999999999999984 69999999977666554 55556665 666677665 2 331 24589999985
Q ss_pred cccc--------ccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 277 RCLI--------PWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 277 ~~l~--------~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.-.. ....+...++.++.++|+|||+++++..+.
T Consensus 293 PP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~ 334 (385)
T 2b78_A 293 PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 334 (385)
T ss_dssp CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 3221 111122457788899999999999987554
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=4e-08 Score=93.30 Aligned_cols=122 Identities=10% Similarity=-0.018 Sum_probs=85.1
Q ss_pred EEecCCCCCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC
Q 036725 175 FRFPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV 251 (392)
Q Consensus 175 ~~fp~~g~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~ 251 (392)
+.+.-..++|..+...-..++.+.+. ++. +|||+|||+|.++..++.+ .|+++|+++..+.. ..+.++.+++
T Consensus 99 ~~~D~~k~~f~~~~~~er~ri~~~~~--~g~--~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~-~~~N~~~N~v 173 (278)
T 3k6r_A 99 YKLDVAKIMFSPANVKERVRMAKVAK--PDE--LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKF-LVENIHLNKV 173 (278)
T ss_dssp EEEETTTSCCCGGGHHHHHHHHHHCC--TTC--EEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHH-HHHHHHHTTC
T ss_pred EEEeccceEEcCCcHHHHHHHHHhcC--CCC--EEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHH-HHHHHHHcCC
Confidence 34444556666666666667777765 444 8999999999999888765 68999998754443 4445566666
Q ss_pred C-cEEEEeccccCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 252 P-AVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 252 ~-~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
. .+....++...-.+.+.||.|++..- .....+|..+.++||+||++.+.
T Consensus 174 ~~~v~~~~~D~~~~~~~~~~D~Vi~~~p-----~~~~~~l~~a~~~lk~gG~ih~~ 224 (278)
T 3k6r_A 174 EDRMSAYNMDNRDFPGENIADRILMGYV-----VRTHEFIPKALSIAKDGAIIHYH 224 (278)
T ss_dssp TTTEEEECSCTTTCCCCSCEEEEEECCC-----SSGGGGHHHHHHHEEEEEEEEEE
T ss_pred CCcEEEEeCcHHHhccccCCCEEEECCC-----CcHHHHHHHHHHHcCCCCEEEEE
Confidence 4 46666666633234688999987631 23456788899999999998764
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-08 Score=97.48 Aligned_cols=101 Identities=14% Similarity=0.059 Sum_probs=69.2
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHH-cC--CCcEEEEeccc--cCCCCCCccceEEecc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALE-RG--VPAVIGVLGTI--KLPYPSRAFDMAHCSR 277 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~-rg--~~~~~~~~~~~--~lp~~d~sFDlV~~~~ 277 (392)
.+|||||||+|.++..++++ .++++|+++..+..+...+..- .+ .+.+.++.++. .++..+++||+|++..
T Consensus 92 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~ 171 (296)
T 1inl_A 92 KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDS 171 (296)
T ss_dssp CEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC
T ss_pred CEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEcC
Confidence 48999999999999999876 6899988776554444332210 11 25566666664 2444568899999853
Q ss_pred ccccccc-----ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 278 CLIPWSA-----NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 278 ~l~~~~~-----d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
. .++.. ....+++++.++|||||++++...
T Consensus 172 ~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 172 T-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp -----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred C-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 2 23111 126899999999999999999753
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.79 E-value=6e-09 Score=96.37 Aligned_cols=109 Identities=10% Similarity=0.128 Sum_probs=75.2
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI- 261 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~- 261 (392)
..++..+.... .+ ++|||||||+|..+..+++. .++++|+++..+..+.. ...+.++. .+.+..++.
T Consensus 59 ~~~l~~l~~~~---~~--~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~-~~~~~g~~~~i~~~~gda~ 132 (237)
T 3c3y_A 59 GQLMSFVLKLV---NA--KKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLP-FIRKAGVEHKINFIESDAM 132 (237)
T ss_dssp HHHHHHHHHHT---TC--CEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEESCHH
T ss_pred HHHHHHHHHhh---CC--CEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCcEEEEEcCHH
Confidence 34555555443 22 38999999999999988763 68999988765544333 33445653 466666654
Q ss_pred c-CC-C-----CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 262 K-LP-Y-----PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 262 ~-lp-~-----~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. ++ + ++++||+|++.. +..+...+++++.++|||||++++..
T Consensus 133 ~~l~~l~~~~~~~~~fD~I~~d~----~~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 133 LALDNLLQGQESEGSYDFGFVDA----DKPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp HHHHHHHHSTTCTTCEEEEEECS----CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHhccCCCCCcCEEEECC----chHHHHHHHHHHHHhcCCCeEEEEec
Confidence 2 22 2 257899999763 33356789999999999999999864
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.5e-09 Score=101.20 Aligned_cols=115 Identities=14% Similarity=0.093 Sum_probs=70.9
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcC--chHHHHHhh-----CCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGV--ASWGAYLFK-----KNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K 262 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~--G~~~~~L~~-----~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~ 262 (392)
++.++.+.+.... ..++|||||||+ +..+..+++ ..|+++|.++.++..+..... ..+...+.++..+. +
T Consensus 65 fl~rav~~l~~~~-g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~-~~~~~~~~~v~aD~~~ 142 (277)
T 3giw_A 65 WMNRAVAHLAKEA-GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLA-STPEGRTAYVEADMLD 142 (277)
T ss_dssp HHHHHHHHHHHTS-CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHC-CCSSSEEEEEECCTTC
T ss_pred HHHHHHHHhcccc-CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhc-cCCCCcEEEEEecccC
Confidence 4445555554222 345899999997 333444333 379999888876655433221 11123466666665 3
Q ss_pred CC----CC--CCccc-----eEEecccccccccC--hHHHHHHHHHhccCCeEEEEEc
Q 036725 263 LP----YP--SRAFD-----MAHCSRCLIPWSAN--DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 263 lp----~~--d~sFD-----lV~~~~~l~~~~~d--~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++ .+ .++|| .|+++.+||+..++ +..++.++.+.|+|||+|+++.
T Consensus 143 ~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~ 200 (277)
T 3giw_A 143 PASILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSI 200 (277)
T ss_dssp HHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred hhhhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence 21 11 35566 47777777555432 4689999999999999999985
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.78 E-value=3e-09 Score=102.83 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=67.9
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC----CCcEEEEeccc-cC--CCCCCccceEEec
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG----VPAVIGVLGTI-KL--PYPSRAFDMAHCS 276 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg----~~~~~~~~~~~-~l--p~~d~sFDlV~~~ 276 (392)
+|||||||+|.++..++++ .++++|+++. +++.|++.- .+.+.++.++. .. .+++++||+|++.
T Consensus 92 rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~-----vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D 166 (317)
T 3gjy_A 92 RITHLGGGACTMARYFADVYPQSRNTVVELDAE-----LARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRD 166 (317)
T ss_dssp EEEEESCGGGHHHHHHHHHSTTCEEEEEESCHH-----HHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEEC
T ss_pred EEEEEECCcCHHHHHHHHHCCCcEEEEEECCHH-----HHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEEC
Confidence 8999999999999999883 6788877654 555555432 24566666664 32 3557899999986
Q ss_pred ccccccc-cC--hHHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLIPWS-AN--DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~~~~-~d--~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....... .. ...+++++.|+|||||+|++..
T Consensus 167 ~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~ 200 (317)
T 3gjy_A 167 VFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC 200 (317)
T ss_dssp CSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence 4322111 11 2689999999999999999864
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.5e-08 Score=91.10 Aligned_cols=110 Identities=16% Similarity=0.013 Sum_probs=77.8
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-cC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KL 263 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~l 263 (392)
..++.+.++++ ++ .+|||||||+|.++..|++. .|+++|+++..+..+.. .+...++. .+.+..++. ..
T Consensus 10 ~RL~~i~~~v~--~g--~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~-N~~~~gl~~~I~v~~gD~l~~ 84 (244)
T 3gnl_A 10 KRLEKVASYIT--KN--ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQK-QVRSSGLTEQIDVRKGNGLAV 84 (244)
T ss_dssp HHHHHHHTTCC--SS--EEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHH-HHHHTTCTTTEEEEECSGGGG
T ss_pred HHHHHHHHhCC--CC--CEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEEecchhhc
Confidence 34566677765 33 38999999999999999986 58899998765555443 44556664 466777776 33
Q ss_pred CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..++..||+|+...+.- .-...+|.+..+.|+++|+|++..
T Consensus 85 ~~~~~~~D~IviagmGg---~lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 85 IEKKDAIDTIVIAGMGG---TLIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp CCGGGCCCEEEEEEECH---HHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred cCccccccEEEEeCCch---HHHHHHHHHHHHHhCCCCEEEEEc
Confidence 33334699988654321 123578899999999999999975
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=7.4e-09 Score=101.43 Aligned_cols=90 Identities=13% Similarity=0.167 Sum_probs=68.7
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEeccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~ 282 (392)
.+|||||||+|.++..++++ .++++|+ + .+++.+++ .+.+.++.++...+++ +||+|++..++++|
T Consensus 195 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~-----~~~~~a~~--~~~v~~~~~d~~~~~~--~~D~v~~~~vlh~~ 264 (358)
T 1zg3_A 195 ESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-P-----QVVGNLTG--NENLNFVGGDMFKSIP--SADAVLLKWVLHDW 264 (358)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-H-----HHHSSCCC--CSSEEEEECCTTTCCC--CCSEEEEESCGGGS
T ss_pred CEEEEECCCcCHHHHHHHHHCCCCeEEEecc-H-----HHHhhccc--CCCcEEEeCccCCCCC--CceEEEEcccccCC
Confidence 38999999999999999876 4566665 2 23433332 3446667776633665 49999999999888
Q ss_pred ccChH--HHHHHHHHhccC---CeEEEEEc
Q 036725 283 SANDG--MYMMEIDRVLRP---GGYWVLSG 307 (392)
Q Consensus 283 ~~d~~--~~L~ei~RvLkP---GG~lvl~~ 307 (392)
. +.. .+|+++.++||| ||++++..
T Consensus 265 ~-d~~~~~~l~~~~~~L~p~~~gG~l~i~e 293 (358)
T 1zg3_A 265 N-DEQSLKILKNSKEAISHKGKDGKVIIID 293 (358)
T ss_dssp C-HHHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred C-HHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence 7 555 999999999999 99999965
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.7e-08 Score=99.81 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=74.7
Q ss_pred hCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC--CCCCc
Q 036725 198 VIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP--YPSRA 269 (392)
Q Consensus 198 ~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp--~~d~s 269 (392)
.+...++. +|||+|||+|..+..|++. .++++|+++..+..+. +.+...|++++.++..+. .++ +++++
T Consensus 254 ~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~-~~~~~~g~~~v~~~~~D~~~~~~~~~~~~ 330 (450)
T 2yxl_A 254 VLDPKPGE--TVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLK-DFVKRMGIKIVKPLVKDARKAPEIIGEEV 330 (450)
T ss_dssp HHCCCTTC--EEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHTTCCSEEEECSCTTCCSSSSCSSC
T ss_pred hcCCCCcC--EEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHH-HHHHHcCCCcEEEEEcChhhcchhhccCC
Confidence 33433444 8999999999999998873 5899988765444332 344455776666666665 554 55688
Q ss_pred cceEEec-----ccccccccCh----------------HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 270 FDMAHCS-----RCLIPWSAND----------------GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 270 FDlV~~~-----~~l~~~~~d~----------------~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
||+|++. ....+-.++. ..+|.++.++|||||++++++...
T Consensus 331 fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 331 ADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp EEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 9999962 1111111111 468999999999999999987554
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.9e-08 Score=96.83 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=68.3
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHH-cC--CCcEEEEeccc-c-CCCCCCccceEEecc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALE-RG--VPAVIGVLGTI-K-LPYPSRAFDMAHCSR 277 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~-rg--~~~~~~~~~~~-~-lp~~d~sFDlV~~~~ 277 (392)
++|||||||+|.++..++++ .++++|+++..+..+...+... .+ .+.+.++.++. . ++..+++||+|++..
T Consensus 97 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d~ 176 (304)
T 2o07_A 97 RKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDS 176 (304)
T ss_dssp CEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEEC
T ss_pred CEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEECC
Confidence 48999999999999999876 5889988776554444332220 12 24566666665 2 455578999999864
Q ss_pred ccccccc----ChHHHHHHHHHhccCCeEEEEEc
Q 036725 278 CLIPWSA----NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 278 ~l~~~~~----d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.. ++.. ....+++++.++|||||++++..
T Consensus 177 ~~-~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 177 SD-PMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp C------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-CCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 32 3221 12468999999999999999965
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.6e-08 Score=96.27 Aligned_cols=110 Identities=19% Similarity=0.227 Sum_probs=72.1
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLP 264 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp 264 (392)
...++.+.+.+....+. +|||||||+|.++..|+++ .++++|+++.++..+... ....+. +.+.++.++. .++
T Consensus 14 ~~i~~~i~~~~~~~~~~--~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~-~~~~~~~~~v~~~~~D~~~~~ 90 (285)
T 1zq9_A 14 PLIINSIIDKAALRPTD--VVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKR-VQGTPVASKLQVLVGDVLKTD 90 (285)
T ss_dssp HHHHHHHHHHTCCCTTC--EEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHH-HTTSTTGGGEEEEESCTTTSC
T ss_pred HHHHHHHHHhcCCCCCC--EEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHH-HHhcCCCCceEEEEcceeccc
Confidence 45777888887755444 8999999999999999886 789998876544433322 222232 4566666665 666
Q ss_pred CCCCccceEEecccccccccCh-HHHH--------------HHH--HHhccCCeEEE
Q 036725 265 YPSRAFDMAHCSRCLIPWSAND-GMYM--------------MEI--DRVLRPGGYWV 304 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~~d~-~~~L--------------~ei--~RvLkPGG~lv 304 (392)
++ +||+|+++... ++.... ..+| +|+ +++|+|||.++
T Consensus 91 ~~--~fD~vv~nlpy-~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 91 LP--FFDTCVANLPY-QISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CC--CCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred ch--hhcEEEEecCc-ccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 65 79999997443 333221 1222 344 37999999763
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=8.6e-09 Score=99.58 Aligned_cols=100 Identities=15% Similarity=0.172 Sum_probs=71.6
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHH-HcC---CCcEEEEeccc-c-CCCCCCccceEEec
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFAL-ERG---VPAVIGVLGTI-K-LPYPSRAFDMAHCS 276 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~-~rg---~~~~~~~~~~~-~-lp~~d~sFDlV~~~ 276 (392)
++|||||||+|.++..++++ .++++|+++..+..+...+.. ..+ .+.+.++.++. . ++..+++||+|++.
T Consensus 79 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d 158 (314)
T 1uir_A 79 KRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIID 158 (314)
T ss_dssp CEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEE
T ss_pred CeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEEC
Confidence 48999999999999999876 589998877655544433322 122 35566666665 3 44457899999997
Q ss_pred cccccc---c--cC--hHHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLIPW---S--AN--DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~~~---~--~d--~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
... ++ . .. ...+++++.++|||||++++..
T Consensus 159 ~~~-~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 159 LTD-PVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp CCC-CBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCC-cccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 543 44 1 11 2689999999999999999964
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.1e-08 Score=96.24 Aligned_cols=107 Identities=20% Similarity=0.237 Sum_probs=68.9
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
...++.+++.+....+. +|||||||+|.++..|+++ .++++|+++.++..+..+ +...+.+++.++.++. .+++
T Consensus 28 ~~i~~~i~~~~~~~~~~--~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~-~~~~~~~~v~~~~~D~~~~~~ 104 (299)
T 2h1r_A 28 PGILDKIIYAAKIKSSD--IVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKR-CLYEGYNNLEVYEGDAIKTVF 104 (299)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHH-HHHTTCCCEEC----CCSSCC
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHH-HHHcCCCceEEEECchhhCCc
Confidence 34566777776654443 8999999999999999987 789998877655444332 2334556666666665 6665
Q ss_pred CCCccceEEecccccccccCh-HHHH---------------HHHHHhccCCe
Q 036725 266 PSRAFDMAHCSRCLIPWSAND-GMYM---------------MEIDRVLRPGG 301 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~-~~~L---------------~ei~RvLkPGG 301 (392)
.+||+|+++... ++.... ..++ ..+.|+++++|
T Consensus 105 --~~~D~Vv~n~py-~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 105 --PKFDVCTANIPY-KISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp --CCCSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred --ccCCEEEEcCCc-ccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 479999997543 333211 2333 44678888877
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.1e-08 Score=96.91 Aligned_cols=95 Identities=17% Similarity=0.147 Sum_probs=65.2
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC--------CCcEEEEeccc-c-CCCCCCccce
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG--------VPAVIGVLGTI-K-LPYPSRAFDM 272 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg--------~~~~~~~~~~~-~-lp~~d~sFDl 272 (392)
++|||||||+|.++..+++. .++++|+++. +++.|+++- .+.+.++.++. . ++..+++||+
T Consensus 110 ~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~-----~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~ 184 (314)
T 2b2c_A 110 KRVLIIGGGDGGILREVLKHESVEKVTMCEIDEM-----VIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDV 184 (314)
T ss_dssp CEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHH-----HHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEE
T ss_pred CEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHH-----HHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceE
Confidence 48999999999999999876 6888877664 444444331 24566666665 2 3445788999
Q ss_pred EEecccccccccCh----HHHHHHHHHhccCCeEEEEEc
Q 036725 273 AHCSRCLIPWSAND----GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 273 V~~~~~l~~~~~d~----~~~L~ei~RvLkPGG~lvl~~ 307 (392)
|++... .++.... ..+++++.++|||||++++..
T Consensus 185 Ii~d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 185 IITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp EEECCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEEcCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 998643 3332221 578999999999999999975
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.3e-08 Score=94.07 Aligned_cols=96 Identities=18% Similarity=0.143 Sum_probs=68.5
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC--------CCcEEEEeccc-c-CCCCCCccce
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG--------VPAVIGVLGTI-K-LPYPSRAFDM 272 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg--------~~~~~~~~~~~-~-lp~~d~sFDl 272 (392)
++|||||||+|.++..+++. +++++|+++. +++.|+++- .+.+.++.++. . ++..+++||+
T Consensus 80 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~-----~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (283)
T 2i7c_A 80 KNVLVVGGGDGGIIRELCKYKSVENIDICEIDET-----VIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDV 154 (283)
T ss_dssp CEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHH-----HHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred CeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHH-----HHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceE
Confidence 48999999999999999876 6888887664 444444331 24566666665 2 3333678999
Q ss_pred EEecccccccccC--h--HHHHHHHHHhccCCeEEEEEcC
Q 036725 273 AHCSRCLIPWSAN--D--GMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 273 V~~~~~l~~~~~d--~--~~~L~ei~RvLkPGG~lvl~~p 308 (392)
|++.... ++... . ..+++++.++|||||++++...
T Consensus 155 Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 155 IIVDSSD-PIGPAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EEEECCC-TTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEcCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 9986432 33211 1 6899999999999999999754
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.3e-08 Score=98.69 Aligned_cols=95 Identities=18% Similarity=0.145 Sum_probs=67.8
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC--------CCcEEEEeccc-c-CCCCCCccce
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG--------VPAVIGVLGTI-K-LPYPSRAFDM 272 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg--------~~~~~~~~~~~-~-lp~~d~sFDl 272 (392)
.+|||||||+|.++..+++. .++++|+++.. ++.|+++- .+.+.++.++. . ++..+++||+
T Consensus 118 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~-----l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDv 192 (321)
T 2pt6_A 118 KNVLVVGGGDGGIIRELCKYKSVENIDICEIDETV-----IEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDV 192 (321)
T ss_dssp CEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHH-----HHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEE
T ss_pred CEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHH-----HHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceE
Confidence 48999999999999999876 58888876654 44444321 24566666664 2 3334678999
Q ss_pred EEeccccccccc--Ch--HHHHHHHHHhccCCeEEEEEc
Q 036725 273 AHCSRCLIPWSA--ND--GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 273 V~~~~~l~~~~~--d~--~~~L~ei~RvLkPGG~lvl~~ 307 (392)
|++... .++.. .. ..+++++.++|||||++++..
T Consensus 193 Ii~d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 193 IIVDSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EEEECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 998642 23321 11 689999999999999999975
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.73 E-value=4.2e-08 Score=96.85 Aligned_cols=97 Identities=12% Similarity=-0.055 Sum_probs=70.4
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c-CCC-CCCccceEEecccc
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K-LPY-PSRAFDMAHCSRCL 279 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~-lp~-~d~sFDlV~~~~~l 279 (392)
.+|||+| |+|.++..++.. .|+++|+++.++..+.. .+.+.++.++.++.++. . +|. .+++||+|+++..+
T Consensus 174 ~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~-~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~ 251 (373)
T 2qm3_A 174 KDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEK-AANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPE 251 (373)
T ss_dssp CEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHH-HHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCS
T ss_pred CEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHH-HHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCC
Confidence 4899999 999999988764 68899888766554443 34445665666777776 4 553 35789999998654
Q ss_pred cccccChHHHHHHHHHhccCCe-EEEEEc
Q 036725 280 IPWSANDGMYMMEIDRVLRPGG-YWVLSG 307 (392)
Q Consensus 280 ~~~~~d~~~~L~ei~RvLkPGG-~lvl~~ 307 (392)
... ....++.++.++||||| .++++.
T Consensus 252 ~~~--~~~~~l~~~~~~LkpgG~~~~~~~ 278 (373)
T 2qm3_A 252 TLE--AIRAFVGRGIATLKGPRCAGYFGI 278 (373)
T ss_dssp SHH--HHHHHHHHHHHTBCSTTCEEEEEE
T ss_pred chH--HHHHHHHHHHHHcccCCeEEEEEE
Confidence 322 24789999999999999 445554
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-08 Score=95.15 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=67.5
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHc-----------CCCcEEEEeccc-c-CCCCCCcc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALER-----------GVPAVIGVLGTI-K-LPYPSRAF 270 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~r-----------g~~~~~~~~~~~-~-lp~~d~sF 270 (392)
++|||||||+|.++..++++ .++++|+++..+..+...+ +. ..+.+.++.++. . ++. +++|
T Consensus 77 ~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~--~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f 153 (281)
T 1mjf_A 77 KRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI--KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF 153 (281)
T ss_dssp CEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT--CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred CeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH--hhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence 48999999999999999876 6889988775544433322 11 124566666654 2 333 6789
Q ss_pred ceEEeccccccccc--C--hHHHHHHHHHhccCCeEEEEEc
Q 036725 271 DMAHCSRCLIPWSA--N--DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 271 DlV~~~~~l~~~~~--d--~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
|+|++.... ++.. . ...+++++.++|+|||++++..
T Consensus 154 D~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 154 DVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 999986432 3321 1 2678999999999999999964
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=5.7e-08 Score=90.91 Aligned_cols=141 Identities=15% Similarity=0.059 Sum_probs=87.4
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP 264 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp 264 (392)
+.+...+.+.++ . ..+|||||||.|-++..+... .++++|+++.++..... ++...|++. .+...+....
T Consensus 120 D~fY~~i~~~i~--~--p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~-~l~~~g~~~-~~~v~D~~~~ 193 (281)
T 3lcv_B 120 DEFYRELFRHLP--R--PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDE-ALTRLNVPH-RTNVADLLED 193 (281)
T ss_dssp HHHHHHHGGGSC--C--CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHH-HHHHTTCCE-EEEECCTTTS
T ss_pred HHHHHHHHhccC--C--CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHH-HHHhcCCCc-eEEEeeeccc
Confidence 444555555653 2 348999999999999988665 79999887765544333 334457664 4445555444
Q ss_pred CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCchhhhhhhcccChHhHHHHHHHHHHHHHHcCc
Q 036725 265 YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCW 342 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~~~~~~~~w~~~~e~l~~~~~~i~~l~~~l~W 342 (392)
.+.+.||+|++.-++++..+.....+.++...|+|+|+++-.. .... -.++......+...++.......|
T Consensus 194 ~p~~~~DvaL~lkti~~Le~q~kg~g~~ll~aL~~~~vvVSfp-~ksl------~Grs~gm~~~Y~~~~e~~~~~~g~ 264 (281)
T 3lcv_B 194 RLDEPADVTLLLKTLPCLETQQRGSGWEVIDIVNSPNIVVTFP-TKSL------GQRSKGMFQNYSQSFESQARERSC 264 (281)
T ss_dssp CCCSCCSEEEETTCHHHHHHHSTTHHHHHHHHSSCSEEEEEEE-CC-------------CHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcchHHHHHHHHHhhhhhhHHHHHHHHHhCCCCEEEecc-chhh------cCCCcchhhHHHHHHHHHHHhcCC
Confidence 5678899999988776654333333449999999999988642 1000 011222223344567776655556
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-07 Score=84.28 Aligned_cols=88 Identities=11% Similarity=0.120 Sum_probs=59.3
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~ 282 (392)
.+|||+|||+|.++..+++. .++++|+++. +++.++++.. .+.++.++. .+| ++||+|+++..++++
T Consensus 53 ~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~-----~~~~a~~~~~-~~~~~~~d~~~~~---~~~D~v~~~~p~~~~ 123 (200)
T 1ne2_A 53 RSVIDAGTGNGILACGSYLLGAESVTAFDIDPD-----AIETAKRNCG-GVNFMVADVSEIS---GKYDTWIMNPPFGSV 123 (200)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBSEEEEEESCHH-----HHHHHHHHCT-TSEEEECCGGGCC---CCEEEEEECCCC---
T ss_pred CEEEEEeCCccHHHHHHHHcCCCEEEEEECCHH-----HHHHHHHhcC-CCEEEECcHHHCC---CCeeEEEECCCchhc
Confidence 38999999999999999876 4889977654 4555555432 334445554 654 689999999877666
Q ss_pred ccC-hHHHHHHHHHhccCCeEEEE
Q 036725 283 SAN-DGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 283 ~~d-~~~~L~ei~RvLkPGG~lvl 305 (392)
... ...++.++.++| |+++++
T Consensus 124 ~~~~~~~~l~~~~~~~--g~~~~~ 145 (200)
T 1ne2_A 124 VKHSDRAFIDKAFETS--MWIYSI 145 (200)
T ss_dssp ----CHHHHHHHHHHE--EEEEEE
T ss_pred cCchhHHHHHHHHHhc--CcEEEE
Confidence 432 257899999998 554433
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-07 Score=94.90 Aligned_cols=114 Identities=17% Similarity=0.152 Sum_probs=80.1
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c--
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K-- 262 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~-- 262 (392)
.+.+++.+.+.+....+. +|||+|||+|.++..|++. .|+++|+++.++..+.. .+...+++++.+..++. .
T Consensus 271 ~e~l~~~~~~~l~~~~~~--~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~-n~~~~~~~~v~f~~~d~~~~l 347 (433)
T 1uwv_A 271 NQKMVARALEWLDVQPED--RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQ-NARLNGLQNVTFYHENLEEDV 347 (433)
T ss_dssp HHHHHHHHHHHHTCCTTC--EEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCTTSCC
T ss_pred HHHHHHHHHHhhcCCCCC--EEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHH-HHHHcCCCceEEEECCHHHHh
Confidence 455677777777644443 8999999999999999986 79999998866655443 44556776777777765 3
Q ss_pred --CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 263 --LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 263 --lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+++++++||+|++..-. . ....++..+. .++|+++++++..+
T Consensus 348 ~~~~~~~~~fD~Vv~dPPr---~-g~~~~~~~l~-~~~p~~ivyvsc~p 391 (433)
T 1uwv_A 348 TKQPWAKNGFDKVLLDPAR---A-GAAGVMQQII-KLEPIRIVYVSCNP 391 (433)
T ss_dssp SSSGGGTTCCSEEEECCCT---T-CCHHHHHHHH-HHCCSEEEEEESCH
T ss_pred hhhhhhcCCCCEEEECCCC---c-cHHHHHHHHH-hcCCCeEEEEECCh
Confidence 34567899999986422 2 1234555554 37899999987543
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.66 E-value=8.6e-08 Score=95.45 Aligned_cols=102 Identities=17% Similarity=0.041 Sum_probs=69.4
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c-CCCCCCccceEEeccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K-LPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~-lp~~d~sFDlV~~~~~l~~~ 282 (392)
.+|||+|||+|.++..++.. .|+++|+++.++..+.. .+...++...+. .++. . ++...+.||+|++..-....
T Consensus 216 ~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~-n~~~ng~~~~~~-~~D~~~~l~~~~~~fD~Ii~dpP~f~~ 293 (393)
T 4dmg_A 216 ERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQ-AALRLGLRVDIR-HGEALPTLRGLEGPFHHVLLDPPTLVK 293 (393)
T ss_dssp CEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHHTCCCEEE-ESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred CeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHH-HHHHhCCCCcEE-EccHHHHHHHhcCCCCEEEECCCcCCC
Confidence 38999999999999999886 58999998876665544 344456554333 4443 3 22223449999986432111
Q ss_pred --------ccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 283 --------SANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 283 --------~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
..+...++.++.++|||||++++.+...
T Consensus 294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 1123578899999999999999776443
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.66 E-value=9.4e-08 Score=96.13 Aligned_cols=110 Identities=12% Similarity=0.060 Sum_probs=74.6
Q ss_pred hhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC--CCCCcc
Q 036725 197 SVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP--YPSRAF 270 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp--~~d~sF 270 (392)
..+...++. +|||+|||+|..+..+++. .++++|+++..+..+.. .+...++...+...+...++ +++++|
T Consensus 240 ~~l~~~~g~--~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~-~~~~~g~~~~~~~~D~~~~~~~~~~~~f 316 (429)
T 1sqg_A 240 TWLAPQNGE--HILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYD-NLKRLGMKATVKQGDGRYPSQWCGEQQF 316 (429)
T ss_dssp HHHCCCTTC--EEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHH-HHHHTTCCCEEEECCTTCTHHHHTTCCE
T ss_pred HHcCCCCcC--eEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-HHHHcCCCeEEEeCchhhchhhcccCCC
Confidence 334433443 8999999999999998874 69999999876665443 44555665444333333544 556889
Q ss_pred ceEEecc------cccccccCh----------------HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 271 DMAHCSR------CLIPWSAND----------------GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 271 DlV~~~~------~l~~~~~d~----------------~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
|+|++.. ++.+ .++. ..+|.++.++|||||++++++...
T Consensus 317 D~Vl~D~Pcsg~g~~~~-~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 317 DRILLDAPCSATGVIRR-HPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp EEEEEECCCCCGGGTTT-CTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CEEEEeCCCCcccccCC-CcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 9999631 1111 1111 378999999999999999987544
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=3.2e-08 Score=100.47 Aligned_cols=101 Identities=15% Similarity=0.165 Sum_probs=69.9
Q ss_pred eEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC-CCCCccceEEecc---
Q 036725 208 TALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP-YPSRAFDMAHCSR--- 277 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp-~~d~sFDlV~~~~--- 277 (392)
+|||+|||+|..+..|+++ .|+++|+++..+..+. +.+...|+. +.++.++. .++ +.+++||+|++..
T Consensus 104 ~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~-~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D~PcS 181 (464)
T 3m6w_A 104 RVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLL-ENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLDAPCS 181 (464)
T ss_dssp EEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHH-HHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEECCCC
T ss_pred EEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCe-EEEEECCHHHhhhhccccCCEEEECCCcC
Confidence 8999999999999998854 5899988776554433 344455766 55555554 444 3467899999521
Q ss_pred ---ccc-------ccccC--------hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 278 ---CLI-------PWSAN--------DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 278 ---~l~-------~~~~d--------~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++. .|..+ ...+|.++.++|||||+|++++...
T Consensus 182 g~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 182 GEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 110 11111 1578999999999999999987554
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=6.6e-08 Score=89.56 Aligned_cols=99 Identities=18% Similarity=0.111 Sum_probs=68.2
Q ss_pred cceEEEECCcCchHHHHHhhC-CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEeccccccccc
Q 036725 206 VRTALDTGCGVASWGAYLFKK-NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~-~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
..+|||||||.|.++..+... .++++|+++.++..+.. .+...+.+..+.+.+....+. .++||+|++.-++++...
T Consensus 106 p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~-~~~~~g~~~~~~v~D~~~~~~-~~~~DvvLllk~lh~LE~ 183 (253)
T 3frh_A 106 PRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITP-FAREKDWDFTFALQDVLCAPP-AEAGDLALIFKLLPLLER 183 (253)
T ss_dssp CSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHH-HHHHTTCEEEEEECCTTTSCC-CCBCSEEEEESCHHHHHH
T ss_pred CCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHH-HHHhcCCCceEEEeecccCCC-CCCcchHHHHHHHHHhhh
Confidence 449999999999999987743 89999998765554433 334446444444444445554 458999999877765543
Q ss_pred ChHHHHHHHHHhccCCeEEEEE
Q 036725 285 NDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 285 d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.....+.++...|+++|+++-.
T Consensus 184 q~~~~~~~ll~aL~~~~vvVsf 205 (253)
T 3frh_A 184 EQAGSAMALLQSLNTPRMAVSF 205 (253)
T ss_dssp HSTTHHHHHHHHCBCSEEEEEE
T ss_pred hchhhHHHHHHHhcCCCEEEEc
Confidence 3333444888899999877664
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4.4e-08 Score=97.01 Aligned_cols=103 Identities=15% Similarity=0.061 Sum_probs=73.7
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC-CC---CCCccceEEecccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL-PY---PSRAFDMAHCSRCL 279 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l-p~---~d~sFDlV~~~~~l 279 (392)
.+|||+|||+|.++..+++. .|+++|+++..+..+.. .+...++.++.++.++. .. +. .+++||+|++..-.
T Consensus 211 ~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~-n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~ 289 (382)
T 1wxx_A 211 ERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEE-NARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPA 289 (382)
T ss_dssp EEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHH-HHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHH-HHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCCC
Confidence 48999999999999999876 78999998765555433 44555666566666665 32 21 25789999986322
Q ss_pred ccc--------ccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 280 IPW--------SANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 280 ~~~--------~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
... ......++.++.++|+|||+++++....
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 290 FAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp SCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 111 1233578999999999999999987554
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-07 Score=94.54 Aligned_cols=103 Identities=13% Similarity=0.010 Sum_probs=73.8
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-C-cEEEEeccc-cC-C-C--CCCccceEEec
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-P-AVIGVLGTI-KL-P-Y--PSRAFDMAHCS 276 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~-~~~~~~~~~-~l-p-~--~d~sFDlV~~~ 276 (392)
.+|||+|||+|.++..+++. .|+++|+++..+..+.. .+...++ . ++.++.++. .. + + ..++||+|++.
T Consensus 222 ~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~-n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~d 300 (396)
T 3c0k_A 222 KRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQ-NVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_dssp CEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHH-HHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEEC
Confidence 38999999999999999886 68999998765554433 4455566 4 666666665 32 2 1 14689999986
Q ss_pred cccc--------ccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 277 RCLI--------PWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 277 ~~l~--------~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.-.. ........++.++.++|+|||+++++..+.
T Consensus 301 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp CSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 3221 111244688999999999999999987554
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.63 E-value=6.9e-08 Score=98.56 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=71.4
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC-CCCccceEEecc--
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY-PSRAFDMAHCSR-- 277 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~-~d~sFDlV~~~~-- 277 (392)
.+|||+|||+|..+..|++. .|+++|+++..+..+. +.+...|+.++.++..+. .++. .+++||.|++..
T Consensus 119 ~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~-~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~Pc 197 (479)
T 2frx_A 119 QRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLH-ANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPC 197 (479)
T ss_dssp SEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHH-HHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECCC
T ss_pred CEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCCc
Confidence 38999999999999988874 5899988775554433 344445776666666665 4443 467899999731
Q ss_pred ----ccc-------ccccC--------hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 278 ----CLI-------PWSAN--------DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 278 ----~l~-------~~~~d--------~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++. +|..+ ...+|.++.++|||||++++++...
T Consensus 198 Sg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 198 SGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 111 12111 1368999999999999999987544
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.9e-07 Score=90.90 Aligned_cols=100 Identities=9% Similarity=0.099 Sum_probs=72.0
Q ss_pred HHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCCCCCCc
Q 036725 194 ELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLPYPSRA 269 (392)
Q Consensus 194 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp~~d~s 269 (392)
.+.+.+. .+ .+|||+|||+|.++.. ++. .|+++|+++..+..+. +.+...++ +.+.++.++. ... ++
T Consensus 188 ~i~~~~~--~~--~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~-~n~~~n~l~~~v~~~~~D~~~~~---~~ 258 (336)
T 2yx1_A 188 RIMKKVS--LN--DVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLK-KNIKLNKLEHKIIPILSDVREVD---VK 258 (336)
T ss_dssp HHHHHCC--TT--CEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCGGGCC---CC
T ss_pred HHHHhcC--CC--CEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHH-HHHHHcCCCCcEEEEECChHHhc---CC
Confidence 4455543 33 3899999999999999 765 7899999886555544 34455565 4566666665 443 78
Q ss_pred cceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 270 FDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 270 FDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
||+|++..-. ....++.++.++|+|||++++..
T Consensus 259 fD~Vi~dpP~-----~~~~~l~~~~~~L~~gG~l~~~~ 291 (336)
T 2yx1_A 259 GNRVIMNLPK-----FAHKFIDKALDIVEEGGVIHYYT 291 (336)
T ss_dssp EEEEEECCTT-----TGGGGHHHHHHHEEEEEEEEEEE
T ss_pred CcEEEECCcH-----hHHHHHHHHHHHcCCCCEEEEEE
Confidence 9999986311 22478899999999999999965
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1e-07 Score=101.72 Aligned_cols=102 Identities=16% Similarity=0.042 Sum_probs=74.8
Q ss_pred eEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC--cEEEEeccc-c-CCCCCCccceEEeccccc
Q 036725 208 TALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI-K-LPYPSRAFDMAHCSRCLI 280 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~--~~~~~~~~~-~-lp~~d~sFDlV~~~~~l~ 280 (392)
+|||+|||+|.++..++.. .|+++|+++..+..+.. .+...++. .+.++.++. . ++...++||+|++..-..
T Consensus 542 ~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~-N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~f 620 (703)
T 3v97_A 542 DFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAER-NLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTF 620 (703)
T ss_dssp EEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCSB
T ss_pred cEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCccc
Confidence 8999999999999998875 49999998876665444 34445654 566666665 3 455568999999864211
Q ss_pred ----------ccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 281 ----------PWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 281 ----------~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
....+...++.++.++|+|||+|+++....
T Consensus 621 ~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~ 660 (703)
T 3v97_A 621 SNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKR 660 (703)
T ss_dssp C-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred cCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 112234578999999999999999987654
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.61 E-value=4.8e-07 Score=80.86 Aligned_cols=93 Identities=10% Similarity=0.044 Sum_probs=64.0
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~ 282 (392)
.+|||+|||+|.++..+++. .++++|+++..+..+.. .+...++ .+.++.++. .++ ++||+|+++..++.+
T Consensus 51 ~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~-~~~~~~~-~~~~~~~d~~~~~---~~~D~v~~~~p~~~~ 125 (207)
T 1wy7_A 51 KVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIE-NLGEFKG-KFKVFIGDVSEFN---SRVDIVIMNPPFGSQ 125 (207)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HTGGGTT-SEEEEESCGGGCC---CCCSEEEECCCCSSS
T ss_pred CEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHH-HHHHcCC-CEEEEECchHHcC---CCCCEEEEcCCCccc
Confidence 38999999999999999876 48999887654443322 2223344 455556655 553 489999998766544
Q ss_pred cc-ChHHHHHHHHHhccCCeEEEEE
Q 036725 283 SA-NDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 283 ~~-d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.. ....++.++.++| ||.+++.
T Consensus 126 ~~~~~~~~l~~~~~~l--~~~~~~~ 148 (207)
T 1wy7_A 126 RKHADRPFLLKAFEIS--DVVYSIH 148 (207)
T ss_dssp STTTTHHHHHHHHHHC--SEEEEEE
T ss_pred cCCchHHHHHHHHHhc--CcEEEEE
Confidence 32 2367899999999 6655543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.3e-08 Score=97.24 Aligned_cols=102 Identities=16% Similarity=0.116 Sum_probs=71.2
Q ss_pred eEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC-CCCCccceEEeccc--
Q 036725 208 TALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP-YPSRAFDMAHCSRC-- 278 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp-~~d~sFDlV~~~~~-- 278 (392)
+|||+|||+|..+..|++. .|+++|+++..+..+ .+.+...|+.++.++..+. .++ +.+++||+|++..-
T Consensus 108 ~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~-~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~DaPCS 186 (456)
T 3m4x_A 108 KVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKIL-SENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVDAPCS 186 (456)
T ss_dssp EEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHH-HHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEECCCC
T ss_pred EEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHH-HHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEECCCCC
Confidence 8999999999999888864 589998877554443 3344556777776666665 443 23678999997421
Q ss_pred ----cc-------ccccC--------hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 279 ----LI-------PWSAN--------DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 279 ----l~-------~~~~d--------~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+. .|..+ ...+|.++.++|||||++++++...
T Consensus 187 g~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 187 GEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 10 01111 1278999999999999999987555
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.9e-07 Score=92.21 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=77.7
Q ss_pred HHHHHHHHhhCCCCC---CCcceEEEECCcCchHHHHHhh-------------------CCcEEEeCCccChHHHHHHHH
Q 036725 189 DAYIEELASVIPMDS---GMVRTALDTGCGVASWGAYLFK-------------------KNVITMSFAPRDSHEAQVQFA 246 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~---~~~~~VLDiGCG~G~~~~~L~~-------------------~~v~~vd~s~~d~~~a~~~~a 246 (392)
...++..++.+.... ...-+|+|+|||+|..+..+.. -.|..-|+...|.+.-.....
T Consensus 33 ~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~ 112 (374)
T 3b5i_A 33 LHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLP 112 (374)
T ss_dssp HHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSC
T ss_pred HHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhh
Confidence 334454445444332 2235899999999988876621 156677888888765444332
Q ss_pred HH------------c--CCCcEEEEeccc-cCCCCCCccceEEeccccccccc---------------------------
Q 036725 247 LE------------R--GVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA--------------------------- 284 (392)
Q Consensus 247 ~~------------r--g~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~--------------------------- 284 (392)
.. . +.-.+..+.++. ...||+++||+|+++.++ ||..
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aL-HWls~~p~~l~~~~~~~~nkg~i~~~~~~~~ 191 (374)
T 3b5i_A 113 PLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSL-HWLSQVPESVTDRRSAAYNRGRVFIHGAGEK 191 (374)
T ss_dssp CBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCT-TBCSSCCGGGGCTTSTTCCTTTSSSSSCCHH
T ss_pred hhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEeccee-eeeccCchhhhccccccccCCceEeCCCCHH
Confidence 21 0 011233444554 455899999999999988 6754
Q ss_pred -----------ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 285 -----------NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 285 -----------d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
|...+|+...|.|+|||.++++..
T Consensus 192 v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 192 TTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCL 226 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 223468899999999999999754
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-07 Score=93.73 Aligned_cols=109 Identities=18% Similarity=0.310 Sum_probs=75.8
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~ 262 (392)
...++.+.+.+....+ .+|||+|||+|.++..++++ .++++|+++..+..+ ..+.+..++. .
T Consensus 25 ~~l~~~~~~~~~~~~~--~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~ 92 (421)
T 2ih2_A 25 PEVVDFMVSLAEAPRG--GRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLL 92 (421)
T ss_dssp HHHHHHHHHHCCCCTT--CEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGG
T ss_pred HHHHHHHHHhhccCCC--CEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhh
Confidence 4567778887764333 38999999999999998863 799999987655332 2345555555 4
Q ss_pred CCCCCCccceEEecccccccc----------cCh------------------HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 263 LPYPSRAFDMAHCSRCLIPWS----------AND------------------GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~----------~d~------------------~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.+ ++++||+|+++.-..... ++. ..++..+.++|+|||++++..|..
T Consensus 93 ~~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~ 167 (421)
T 2ih2_A 93 WE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 167 (421)
T ss_dssp CC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred cC-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence 33 457899999963221111 111 256889999999999999988653
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-07 Score=94.09 Aligned_cols=103 Identities=16% Similarity=0.045 Sum_probs=74.0
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-cC-CC---CCCccceEEecc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KL-PY---PSRAFDMAHCSR 277 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~l-p~---~d~sFDlV~~~~ 277 (392)
.+|||+|||+|.++..+++. .|+++|+++..+..+.. .+...++. ++.++.++. .+ +. .+++||+|++..
T Consensus 219 ~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~-n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dp 297 (396)
T 2as0_A 219 DRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKE-NAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDP 297 (396)
T ss_dssp CEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEECC
Confidence 38999999999999999976 68999998866555443 44555665 566666665 32 21 257899999863
Q ss_pred ccccc--------ccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 278 CLIPW--------SANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 278 ~l~~~--------~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
-.... ..+...++.++.++|+|||+++++....
T Consensus 298 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 298 PAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp CCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 22111 1234678999999999999999987544
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=5.5e-07 Score=84.61 Aligned_cols=121 Identities=14% Similarity=0.128 Sum_probs=74.9
Q ss_pred CCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEe
Q 036725 183 QFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVL 258 (392)
Q Consensus 183 ~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~ 258 (392)
.|..++...+.++.+......+ .+|||+|||+|.|+..++++ .+.++|+.. |.....+.. ...+.+.+.+..
T Consensus 54 ~YrSRaA~KL~ei~ek~~l~~~--~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGv-Dl~~~pi~~-~~~g~~ii~~~~ 129 (277)
T 3evf_A 54 VAVSRGTAKLRWFHERGYVKLE--GRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGR-DGHEKPMNV-QSLGWNIITFKD 129 (277)
T ss_dssp BCSSTHHHHHHHHHHTTSSCCC--EEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC-TTCCCCCCC-CBTTGGGEEEEC
T ss_pred CccccHHHHHHHHHHhCCCCCC--CEEEEecCCCCHHHHHHHHhcCCCcceeEEEec-cCccccccc-CcCCCCeEEEec
Confidence 4666666667777766443343 38999999999999988765 466777762 321100000 001223344333
Q ss_pred ccccCCCCCCccceEEeccccc---ccccChH--HHHHHHHHhccCC-eEEEEEc
Q 036725 259 GTIKLPYPSRAFDMAHCSRCLI---PWSANDG--MYMMEIDRVLRPG-GYWVLSG 307 (392)
Q Consensus 259 ~~~~lp~~d~sFDlV~~~~~l~---~~~~d~~--~~L~ei~RvLkPG-G~lvl~~ 307 (392)
+.....++.+.||+|+|..+.. ++.+... .+|..+.++|+|| |.|++-.
T Consensus 130 ~~dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KV 184 (277)
T 3evf_A 130 KTDIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKV 184 (277)
T ss_dssp SCCTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred cceehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 3234567788999999986442 2332221 3578889999999 9999964
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.2e-07 Score=93.48 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=73.3
Q ss_pred HHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC
Q 036725 188 ADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP 264 (392)
Q Consensus 188 ~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp 264 (392)
.+.+++.+.+ + ..+ .+|||+|||+|.++..|++. .|+++|+++.++..+.. .+...++. +.+..++. .+.
T Consensus 278 ~e~l~~~~~~-~--~~~--~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~-n~~~ngl~-v~~~~~d~~~~~ 350 (425)
T 2jjq_A 278 AVNLVRKVSE-L--VEG--EKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARR-NVEINNVD-AEFEVASDREVS 350 (425)
T ss_dssp HHHHHHHHHH-H--CCS--SEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHHTCC-EEEEECCTTTCC
T ss_pred HHHHHHHhhc-c--CCC--CEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHH-HHHHcCCc-EEEEECChHHcC
Confidence 3444555555 2 233 38999999999999999987 79999998876655544 44455666 66666665 443
Q ss_pred CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 265 YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
++ +||+|++.... ......++..+. .|+|||+++++..+
T Consensus 351 -~~-~fD~Vv~dPPr---~g~~~~~~~~l~-~l~p~givyvsc~p 389 (425)
T 2jjq_A 351 -VK-GFDTVIVDPPR---AGLHPRLVKRLN-REKPGVIVYVSCNP 389 (425)
T ss_dssp -CT-TCSEEEECCCT---TCSCHHHHHHHH-HHCCSEEEEEESCH
T ss_pred -cc-CCCEEEEcCCc---cchHHHHHHHHH-hcCCCcEEEEECCh
Confidence 23 89999986422 112234566554 59999999998643
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.57 E-value=8.3e-08 Score=90.35 Aligned_cols=87 Identities=11% Similarity=0.084 Sum_probs=63.5
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcC--------CCcEEEEeccc-cCCCCCCccceEEe
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERG--------VPAVIGVLGTI-KLPYPSRAFDMAHC 275 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg--------~~~~~~~~~~~-~lp~~d~sFDlV~~ 275 (392)
++|||||||+|.++..+++. .++++|+++. +++.|++.- .+.+.++.++. ... ++||+|++
T Consensus 74 ~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~-----~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~ 145 (262)
T 2cmg_A 74 KEVLIVDGFDLELAHQLFKYDTHIDFVQADEK-----ILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFC 145 (262)
T ss_dssp CEEEEESSCCHHHHHHHTTSSCEEEEECSCHH-----HHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEE
T ss_pred CEEEEEeCCcCHHHHHHHhCCCEEEEEECCHH-----HHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEE
Confidence 58999999999999988875 5777766554 444444321 24455666665 333 78999998
Q ss_pred cccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 276 SRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 276 ~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.. .++..+++++.++|||||++++..
T Consensus 146 d~------~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 146 LQ------EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp SS------CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred CC------CChHHHHHHHHHhcCCCcEEEEEc
Confidence 62 245568999999999999999964
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-07 Score=91.74 Aligned_cols=103 Identities=14% Similarity=0.072 Sum_probs=70.4
Q ss_pred cceEEEECCcCchHHHHHhhC---------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEec
Q 036725 206 VRTALDTGCGVASWGAYLFKK---------NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCS 276 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~---------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~ 276 (392)
..+|||+|||+|.++..+++. .++|+|+++..+..+..... ..++.. .+..++...+.+.++||+|+++
T Consensus 131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~-~~g~~~-~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD-LQRQKM-TLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH-HHTCCC-EEEESCTTSCCCCCCEEEEEEE
T ss_pred CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHH-hCCCCc-eEEECCCCCccccCCccEEEEC
Confidence 348999999999998877643 47899887765555444332 345543 3445554334456789999998
Q ss_pred ccccccccC----------------h-HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 277 RCLIPWSAN----------------D-GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 277 ~~l~~~~~d----------------~-~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
..+..+..+ . ..++.++.+.|||||+++++.|..
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~ 259 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 259 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence 654333211 1 258999999999999999987654
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.51 E-value=7e-09 Score=96.32 Aligned_cols=110 Identities=12% Similarity=0.106 Sum_probs=72.2
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPS 267 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d 267 (392)
.++.+.+.+....+ .+|||+|||+|.++..|+++ .++++|+++.++..+..... ..+.+.++.++. .+++++
T Consensus 17 ~~~~i~~~~~~~~~--~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~~~~ 91 (245)
T 1yub_A 17 VLNQIIKQLNLKET--DTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQFPN 91 (245)
T ss_dssp THHHHHHHCCCCSS--EEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTTCCC
T ss_pred HHHHHHHhcCCCCC--CEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhcCccc
Confidence 45667777765444 38999999999999999886 78999888765543222111 234566666666 777764
Q ss_pred -CccceEEecccc-----------cccccChHHHH----HHHHHhccCCeEEEEEc
Q 036725 268 -RAFDMAHCSRCL-----------IPWSANDGMYM----MEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 268 -~sFDlV~~~~~l-----------~~~~~d~~~~L----~ei~RvLkPGG~lvl~~ 307 (392)
++| .|+++.-. .|+. ....++ +.+.|+|+|||.+.+..
T Consensus 92 ~~~f-~vv~n~Py~~~~~~~~~~~~~~~-~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 92 KQRY-KIVGNIPYHLSTQIIKKVVFESR-ASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp SSEE-EEEEECCSSSCHHHHHHHHHHCC-CEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred CCCc-EEEEeCCccccHHHHHHHHhCCC-CCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 689 66665321 1111 222334 66999999999987744
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=7.8e-07 Score=85.15 Aligned_cols=84 Identities=12% Similarity=0.088 Sum_probs=65.2
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
...++.+++.+....+. +|||||||+|.++..|+++ .|+++|+++.++..+..... +.+++.++.++. .+++
T Consensus 36 ~~i~~~Iv~~l~~~~~~--~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~---~~~~v~vi~gD~l~~~~ 110 (295)
T 3gru_A 36 KNFVNKAVESANLTKDD--VVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKE---LYNNIEIIWGDALKVDL 110 (295)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHH---HCSSEEEEESCTTTSCG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhc---cCCCeEEEECchhhCCc
Confidence 45778888888765554 8999999999999999986 79999999877666554433 235566667666 7788
Q ss_pred CCCccceEEecc
Q 036725 266 PSRAFDMAHCSR 277 (392)
Q Consensus 266 ~d~sFDlV~~~~ 277 (392)
++.+||.|+++.
T Consensus 111 ~~~~fD~Iv~Nl 122 (295)
T 3gru_A 111 NKLDFNKVVANL 122 (295)
T ss_dssp GGSCCSEEEEEC
T ss_pred ccCCccEEEEeC
Confidence 888899999874
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=3.1e-07 Score=87.67 Aligned_cols=86 Identities=10% Similarity=0.061 Sum_probs=56.9
Q ss_pred ceEEEECCcC------ch-HHHHHhh--CCcEEEeCCccChHHHHHHHHHHcCCCcEEE-Eeccc-cCCCCCCccceEEe
Q 036725 207 RTALDTGCGV------AS-WGAYLFK--KNVITMSFAPRDSHEAQVQFALERGVPAVIG-VLGTI-KLPYPSRAFDMAHC 275 (392)
Q Consensus 207 ~~VLDiGCG~------G~-~~~~L~~--~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~-~~~~~-~lp~~d~sFDlV~~ 275 (392)
.+|||+|||+ |+ .++.+.. ..|+++|+++. + +.+.+ +.++. .++++ ++||+|++
T Consensus 65 ~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~-v-------------~~v~~~i~gD~~~~~~~-~~fD~Vvs 129 (290)
T 2xyq_A 65 MRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF-V-------------SDADSTLIGDCATVHTA-NKWDLIIS 129 (290)
T ss_dssp CEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC-B-------------CSSSEEEESCGGGCCCS-SCEEEEEE
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC-C-------------CCCEEEEECccccCCcc-CcccEEEE
Confidence 3899999944 65 2222222 26999999885 1 22333 55555 66654 78999999
Q ss_pred cccccccc-----------cChHHHHHHHHHhccCCeEEEEEcC
Q 036725 276 SRCLIPWS-----------ANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 276 ~~~l~~~~-----------~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+... ++. .....+++++.|+|||||.|++...
T Consensus 130 n~~~-~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~ 172 (290)
T 2xyq_A 130 DMYD-PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 172 (290)
T ss_dssp CCCC-CC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCc-cccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 7432 110 0124789999999999999999653
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.46 E-value=6.4e-07 Score=90.45 Aligned_cols=117 Identities=16% Similarity=0.159 Sum_probs=77.3
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhh-----------------CCcEEEeCCccChHHHHHHHHHHcCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFK-----------------KNVITMSFAPRDSHEAQVQFALERGV 251 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~-----------------~~v~~vd~s~~d~~~a~~~~a~~rg~ 251 (392)
...++.+.+.+....+ .+|||.|||+|.++..+++ ..++|+|+++.....+..+.. ..++
T Consensus 157 ~~v~~~mv~~l~~~~~--~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~-l~g~ 233 (445)
T 2okc_A 157 RPLIQAMVDCINPQMG--ETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY-LHGI 233 (445)
T ss_dssp HHHHHHHHHHHCCCTT--CCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH-HTTC
T ss_pred HHHHHHHHHHhCCCCC--CEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH-HhCC
Confidence 3466677777654333 3899999999999877654 379999998765554443332 3454
Q ss_pred C--cEEEEeccc-cCCCCCCccceEEeccccccccc-C---------------hHHHHHHHHHhccCCeEEEEEcCC
Q 036725 252 P--AVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA-N---------------DGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 252 ~--~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~-d---------------~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
. ...+..++. ..+. ..+||+|+++.-+..... + ...++..+.++|||||+++++.|.
T Consensus 234 ~~~~~~i~~gD~l~~~~-~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~ 309 (445)
T 2okc_A 234 GTDRSPIVCEDSLEKEP-STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 309 (445)
T ss_dssp CSSCCSEEECCTTTSCC-SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred CcCCCCEeeCCCCCCcc-cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence 2 233344443 4444 348999999854432110 0 137899999999999999998764
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=4e-07 Score=84.53 Aligned_cols=80 Identities=10% Similarity=0.201 Sum_probs=56.0
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcC--CCcEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERG--VPAVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg--~~~~~~~~~~~-~l 263 (392)
...++.+.+.+....+. +|||||||+|.++..|+++ .++++|+++. +++.++++. .+.+.++.++. .+
T Consensus 16 ~~~~~~i~~~~~~~~~~--~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~-----~~~~a~~~~~~~~~v~~~~~D~~~~ 88 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEHD--NIFEIGSGKGHFTLELVQRCNFVTAIEIDHK-----LCKTTENKLVDHDNFQVLNKDILQF 88 (244)
T ss_dssp HHHHHHHHTTCCCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEECSCHH-----HHHHHHHHTTTCCSEEEECCCGGGC
T ss_pred HHHHHHHHHhCCCCCCC--EEEEEeCCchHHHHHHHHcCCeEEEEECCHH-----HHHHHHHhhccCCCeEEEEChHHhC
Confidence 45778888887754444 8999999999999999986 7888877654 444444432 24566677776 77
Q ss_pred CCCC-CccceEEec
Q 036725 264 PYPS-RAFDMAHCS 276 (392)
Q Consensus 264 p~~d-~sFDlV~~~ 276 (392)
++++ ..| .|+++
T Consensus 89 ~~~~~~~~-~vv~n 101 (244)
T 1qam_A 89 KFPKNQSY-KIFGN 101 (244)
T ss_dssp CCCSSCCC-EEEEE
T ss_pred CcccCCCe-EEEEe
Confidence 8774 456 45554
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.3e-06 Score=85.99 Aligned_cols=109 Identities=11% Similarity=0.017 Sum_probs=75.1
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC-C
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL-P 264 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l-p 264 (392)
+.+++.+.+.+... + .+|||+|||+|.++..|++. .|+++|+++..+..+.. .++..+++++.++.++. .+ +
T Consensus 200 ~~l~~~~~~~~~~~-~--~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~-n~~~ng~~~v~~~~~d~~~~~~ 275 (369)
T 3bt7_A 200 IQMLEWALDVTKGS-K--GDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQY-NIAANHIDNVQIIRMAAEEFTQ 275 (369)
T ss_dssp HHHHHHHHHHTTTC-C--SEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHH-HHHHTTCCSEEEECCCSHHHHH
T ss_pred HHHHHHHHHHhhcC-C--CEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHH-HHHHcCCCceEEEECCHHHHHH
Confidence 55667777776543 2 37999999999999999886 79999998876655443 45566777777777665 22 1
Q ss_pred -CCC--------------CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 265 -YPS--------------RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 265 -~~d--------------~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+.. .+||+|++..-.. .+..++.+.|+++|.+++++.
T Consensus 276 ~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~-------g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 276 AMNGVREFNRLQGIDLKSYQCETIFVDPPRS-------GLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp HHSSCCCCTTGGGSCGGGCCEEEEEECCCTT-------CCCHHHHHHHTTSSEEEEEES
T ss_pred HHhhccccccccccccccCCCCEEEECcCcc-------ccHHHHHHHHhCCCEEEEEEC
Confidence 121 3799998753211 134667778889998888753
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.29 E-value=4.4e-06 Score=82.83 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=78.8
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC------------------------------------------
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK------------------------------------------ 226 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~------------------------------------------ 226 (392)
+.+...++.+.....+ .+|||++||+|.++..++..
T Consensus 181 e~lAa~ll~~~~~~~~--~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 258 (385)
T 3ldu_A 181 ETLAAGLIYLTPWKAG--RVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKF 258 (385)
T ss_dssp HHHHHHHHHTSCCCTT--SCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCC
T ss_pred HHHHHHHHHhhCCCCC--CeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCc
Confidence 4466666666664444 38999999999998776542
Q ss_pred CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-cCCCCCCccceEEecccccccc---cChHHHHHHHHHhccC--
Q 036725 227 NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWS---ANDGMYMMEIDRVLRP-- 299 (392)
Q Consensus 227 ~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~---~d~~~~L~ei~RvLkP-- 299 (392)
.|+++|+++.++..+.. .+...++. .+.+...+. +++. ..+||+|+++.-...-. .+...++.++.++||+
T Consensus 259 ~V~GvDid~~ai~~Ar~-Na~~~gl~~~i~~~~~D~~~l~~-~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~ 336 (385)
T 3ldu_A 259 KIYGYDIDEESIDIARE-NAEIAGVDEYIEFNVGDATQFKS-EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLK 336 (385)
T ss_dssp CEEEEESCHHHHHHHHH-HHHHHTCGGGEEEEECCGGGCCC-SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSB
T ss_pred eEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECChhhcCc-CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCC
Confidence 48999998876665544 44455654 566666665 6665 45899999985432111 1234677788888887
Q ss_pred CeEEEEEcCCC
Q 036725 300 GGYWVLSGPLI 310 (392)
Q Consensus 300 GG~lvl~~p~~ 310 (392)
||.+++.++..
T Consensus 337 g~~~~iit~~~ 347 (385)
T 3ldu_A 337 NWSYYLITSYE 347 (385)
T ss_dssp SCEEEEEESCT
T ss_pred CCEEEEEECCH
Confidence 88887765433
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.3e-06 Score=83.17 Aligned_cols=118 Identities=12% Similarity=0.014 Sum_probs=76.6
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC------------------------------------------
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK------------------------------------------ 226 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~------------------------------------------ 226 (392)
+.+...++.+.....+ ..|||.+||+|.++...+..
T Consensus 187 e~lAa~ll~l~~~~~~--~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 264 (393)
T 3k0b_A 187 ETMAAALVLLTSWHPD--RPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL 264 (393)
T ss_dssp HHHHHHHHHHSCCCTT--SCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred HHHHHHHHHHhCCCCC--CeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCc
Confidence 4455666666664444 37999999999998766542
Q ss_pred CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-cCCCCCCccceEEecccccccc---cChHHHHHHHHHhccC--
Q 036725 227 NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWS---ANDGMYMMEIDRVLRP-- 299 (392)
Q Consensus 227 ~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~---~d~~~~L~ei~RvLkP-- 299 (392)
.|+++|+++.++..+.. .+...|+. .+.+...+. .++.+ .+||+|+++.-...-. .+...++.++.++||+
T Consensus 265 ~V~GvDid~~al~~Ar~-Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~ 342 (393)
T 3k0b_A 265 NIIGGDIDARLIEIAKQ-NAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMP 342 (393)
T ss_dssp CEEEEESCHHHHHHHHH-HHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCT
T ss_pred eEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCC
Confidence 38999998876665544 44555664 344555555 67664 5899999984321111 1234567777777776
Q ss_pred CeEEEEEcCCC
Q 036725 300 GGYWVLSGPLI 310 (392)
Q Consensus 300 GG~lvl~~p~~ 310 (392)
||.+++.++..
T Consensus 343 g~~~~iit~~~ 353 (393)
T 3k0b_A 343 TWSVYVLTSYE 353 (393)
T ss_dssp TCEEEEEECCT
T ss_pred CCEEEEEECCH
Confidence 88887765433
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.27 E-value=6.6e-06 Score=81.54 Aligned_cols=118 Identities=10% Similarity=0.012 Sum_probs=78.6
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC------------------------------------------
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK------------------------------------------ 226 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~------------------------------------------ 226 (392)
+.+...++.+.....+ ..+||.+||+|.++...+..
T Consensus 180 e~LAaall~l~~~~~~--~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 257 (384)
T 3ldg_A 180 ENMAAAIILLSNWFPD--KPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL 257 (384)
T ss_dssp HHHHHHHHHHTTCCTT--SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred HHHHHHHHHHhCCCCC--CeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc
Confidence 4455666666654444 38999999999998766542
Q ss_pred CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-cCCCCCCccceEEecccccc-cc--cChHHHHHHHHHhccC--
Q 036725 227 NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KLPYPSRAFDMAHCSRCLIP-WS--ANDGMYMMEIDRVLRP-- 299 (392)
Q Consensus 227 ~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~-~~--~d~~~~L~ei~RvLkP-- 299 (392)
.++++|+++.++..+.. .+...|+. .+.+...+. .++.+ .+||+|+++.-... .. .+...++.++.+.||+
T Consensus 258 ~v~GvDid~~al~~Ar~-Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~ 335 (384)
T 3ldg_A 258 DISGFDFDGRMVEIARK-NAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLK 335 (384)
T ss_dssp CEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCT
T ss_pred eEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCC
Confidence 39999998876665443 45556664 356666665 67664 48999999843211 11 2335677778888887
Q ss_pred CeEEEEEcCCC
Q 036725 300 GGYWVLSGPLI 310 (392)
Q Consensus 300 GG~lvl~~p~~ 310 (392)
||.+++.++..
T Consensus 336 g~~~~iit~~~ 346 (384)
T 3ldg_A 336 TWSQFILTNDT 346 (384)
T ss_dssp TSEEEEEESCT
T ss_pred CcEEEEEECCH
Confidence 88888876543
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=3.1e-06 Score=83.76 Aligned_cols=95 Identities=12% Similarity=0.098 Sum_probs=67.4
Q ss_pred ceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHc---------------CCCcEEEEeccc-cCC-C
Q 036725 207 RTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALER---------------GVPAVIGVLGTI-KLP-Y 265 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~r---------------g~~~~~~~~~~~-~lp-~ 265 (392)
.+|||+|||+|.++..++.+ .|+++|+++..+..+.. .++.. ++..+.+..++. .+. .
T Consensus 49 ~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~-N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 49 KIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKR-NVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp SEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHH-HHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHH-HHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 38999999999999988875 58999998765544433 33334 665456666665 321 1
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..++||+|+.. ++. ....++..+.+.|||||+++++.
T Consensus 128 ~~~~fD~I~lD----P~~-~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 128 RHRYFHFIDLD----PFG-SPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp STTCEEEEEEC----CSS-CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCCCEEEeC----CCC-CHHHHHHHHHHhcCCCCEEEEEe
Confidence 14579999954 322 44688999999999999988864
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=4.5e-06 Score=82.56 Aligned_cols=104 Identities=14% Similarity=0.235 Sum_probs=67.3
Q ss_pred cceEEEECCcCchHHHHHhhC---------------------CcEEEeCCccChHHHHHHHH-------HHcC--CCcEE
Q 036725 206 VRTALDTGCGVASWGAYLFKK---------------------NVITMSFAPRDSHEAQVQFA-------LERG--VPAVI 255 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~---------------------~v~~vd~s~~d~~~a~~~~a-------~~rg--~~~~~ 255 (392)
.-+|+|+||++|..+..+... .|..-|+...|.+.-..... .+.| .+..+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 348999999999877755432 34456777777644332221 2223 12222
Q ss_pred --EEeccc-cCCCCCCccceEEecccccccccChH---------------------------------------HHHHHH
Q 036725 256 --GVLGTI-KLPYPSRAFDMAHCSRCLIPWSANDG---------------------------------------MYMMEI 293 (392)
Q Consensus 256 --~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~d~~---------------------------------------~~L~ei 293 (392)
.+.+.. ...||+++||+|+++.++ ||..+.. .+|+-.
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCL-HWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCT-TBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEeccee-eecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333 567899999999999888 7854321 125666
Q ss_pred HHhccCCeEEEEEcCCC
Q 036725 294 DRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 294 ~RvLkPGG~lvl~~p~~ 310 (392)
.|.|+|||.++++....
T Consensus 212 a~eL~pGG~mvl~~~gr 228 (384)
T 2efj_A 212 SEELISRGRMLLTFICK 228 (384)
T ss_dssp HHHEEEEEEEEEEEECC
T ss_pred HHHhccCCeEEEEEecC
Confidence 89999999999986443
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.14 E-value=3.1e-06 Score=79.29 Aligned_cols=82 Identities=12% Similarity=0.157 Sum_probs=56.7
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
...++.+++.+....+. +|||||||+|.++..|+++ .++++|+++.++..+..+.. ..+++.++.++. .+++
T Consensus 15 ~~i~~~iv~~~~~~~~~--~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~---~~~~v~~i~~D~~~~~~ 89 (255)
T 3tqs_A 15 SFVLQKIVSAIHPQKTD--TLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYN---QQKNITIYQNDALQFDF 89 (255)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHT---TCTTEEEEESCTTTCCG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHh---hCCCcEEEEcchHhCCH
Confidence 45677777777755554 8999999999999999987 78999887754444332221 135566666666 7766
Q ss_pred CC----CccceEEec
Q 036725 266 PS----RAFDMAHCS 276 (392)
Q Consensus 266 ~d----~sFDlV~~~ 276 (392)
++ +.|| |+++
T Consensus 90 ~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 90 SSVKTDKPLR-VVGN 103 (255)
T ss_dssp GGSCCSSCEE-EEEE
T ss_pred HHhccCCCeE-EEec
Confidence 43 5688 5555
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.13 E-value=1.4e-05 Score=76.77 Aligned_cols=101 Identities=8% Similarity=-0.043 Sum_probs=66.4
Q ss_pred eEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCC---CccceEEec--
Q 036725 208 TALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPS---RAFDMAHCS-- 276 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d---~sFDlV~~~-- 276 (392)
+|||+|||+|..+..|++. .|+++|+++..+.... +.++..|+.++.++.++. .++... ++||.|++.
T Consensus 105 ~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~-~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~P 183 (309)
T 2b9e_A 105 HVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA-TLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPS 183 (309)
T ss_dssp EEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECCC
T ss_pred EEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH-HHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEEcCC
Confidence 8999999999999988863 6999999875544433 344556777776666665 554322 579999963
Q ss_pred ----cccc-----cc----c-cCh-------HHHHHHHHHhccCCeEEEEEcCCC
Q 036725 277 ----RCLI-----PW----S-AND-------GMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 277 ----~~l~-----~~----~-~d~-------~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.++. .| . .+. ..+|..+.++|+ ||++++++...
T Consensus 184 cSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 184 CSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp CCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred cCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 1110 11 1 111 246777888887 99999986544
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.12 E-value=4e-06 Score=86.76 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=75.4
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhh----------------------CCcEEEeCCccChHHHHHHHHH
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFK----------------------KNVITMSFAPRDSHEAQVQFAL 247 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~----------------------~~v~~vd~s~~d~~~a~~~~a~ 247 (392)
..++.+.+++....+ .+|||.+||+|.++..+.+ ..++|+|+++....-+.....
T Consensus 156 ~iv~~mv~~l~p~~~--~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~- 232 (541)
T 2ar0_A 156 PLIKTIIHLLKPQPR--EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL- 232 (541)
T ss_dssp HHHHHHHHHHCCCTT--CCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhccCCC--CeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH-
Confidence 456666666654333 3899999999998876653 268999987765444433322
Q ss_pred HcCCCc-----EEEEeccc-cC-CCCCCccceEEecccccccc------------cC-hHHHHHHHHHhccCCeEEEEEc
Q 036725 248 ERGVPA-----VIGVLGTI-KL-PYPSRAFDMAHCSRCLIPWS------------AN-DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 248 ~rg~~~-----~~~~~~~~-~l-p~~d~sFDlV~~~~~l~~~~------------~d-~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..++.. ..+..++. .. +.+.++||+|+++.-+.... .+ ...++..+.+.|||||++.++.
T Consensus 233 l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 233 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 245442 23344433 32 23457899999985432211 01 2378999999999999999987
Q ss_pred CCC
Q 036725 308 PLI 310 (392)
Q Consensus 308 p~~ 310 (392)
|..
T Consensus 313 p~~ 315 (541)
T 2ar0_A 313 PDN 315 (541)
T ss_dssp EHH
T ss_pred cCc
Confidence 543
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1e-05 Score=76.46 Aligned_cols=82 Identities=13% Similarity=0.149 Sum_probs=59.5
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
...++.+++.+....+ +|||||||+|.++..|+++ .|+++|+++.++..+..+.. + .++.++.++. .+++
T Consensus 33 ~~i~~~Iv~~~~~~~~---~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~---~-~~v~vi~~D~l~~~~ 105 (271)
T 3fut_A 33 EAHLRRIVEAARPFTG---PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLS---G-LPVRLVFQDALLYPW 105 (271)
T ss_dssp HHHHHHHHHHHCCCCS---CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTT---T-SSEEEEESCGGGSCG
T ss_pred HHHHHHHHHhcCCCCC---eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC---C-CCEEEEECChhhCCh
Confidence 4567777777764443 7999999999999999987 89999998876554433222 2 3566666666 7777
Q ss_pred CCC-ccceEEecc
Q 036725 266 PSR-AFDMAHCSR 277 (392)
Q Consensus 266 ~d~-sFDlV~~~~ 277 (392)
++. .+|.|+++.
T Consensus 106 ~~~~~~~~iv~Nl 118 (271)
T 3fut_A 106 EEVPQGSLLVANL 118 (271)
T ss_dssp GGSCTTEEEEEEE
T ss_pred hhccCccEEEecC
Confidence 643 689999874
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.06 E-value=2.8e-06 Score=83.32 Aligned_cols=101 Identities=20% Similarity=0.344 Sum_probs=68.4
Q ss_pred cceEEEECCcCchHHHHHhhC--------------------CcEEEeCCccChHHHHHHHHHH---cCCCcEEEEeccc-
Q 036725 206 VRTALDTGCGVASWGAYLFKK--------------------NVITMSFAPRDSHEAQVQFALE---RGVPAVIGVLGTI- 261 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~--------------------~v~~vd~s~~d~~~a~~~~a~~---rg~~~~~~~~~~~- 261 (392)
.-+|+|+||++|..+..+... .|..-|+...|.+........- .+.-.+..+.+..
T Consensus 52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy 131 (359)
T 1m6e_X 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence 347999999999766544322 4567788888877654432210 1111122344444
Q ss_pred cCCCCCCccceEEecccccccccCh---------------------------------HHHHHHHHHhccCCeEEEEEc
Q 036725 262 KLPYPSRAFDMAHCSRCLIPWSAND---------------------------------GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 262 ~lp~~d~sFDlV~~~~~l~~~~~d~---------------------------------~~~L~ei~RvLkPGG~lvl~~ 307 (392)
...||++++|+|+++.++ ||..+. ..+|+-..+.|+|||.++++.
T Consensus 132 ~rlfp~~S~d~v~Ss~aL-HWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 132 GRLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SCCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hccCCCCceEEEEehhhh-hhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 567899999999999888 675331 245888899999999999975
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=7.9e-06 Score=81.15 Aligned_cols=95 Identities=8% Similarity=0.005 Sum_probs=68.9
Q ss_pred ceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCc--EEEEeccc-c-CC-CCCCccceEEec
Q 036725 207 RTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPA--VIGVLGTI-K-LP-YPSRAFDMAHCS 276 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~--~~~~~~~~-~-lp-~~d~sFDlV~~~ 276 (392)
.+|||++||+|.++..++.+ .|+++|+++..+.. ..+.++..++.. +.++.++. . +. ...+.||+|++.
T Consensus 54 ~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~-~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD 132 (392)
T 3axs_A 54 VKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEI-MKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD 132 (392)
T ss_dssp EEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHH-HHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred CEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHH-HHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence 48999999999999998873 58999887754433 344555567754 66676665 2 22 224679999976
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
- +. ....++..+.+.|+|||+++++.
T Consensus 133 P----~g-~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 133 P----FG-TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp C----SS-CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred C----Cc-CHHHHHHHHHHHhCCCCEEEEEe
Confidence 3 22 34568999999999999998875
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.4e-05 Score=75.29 Aligned_cols=121 Identities=12% Similarity=0.054 Sum_probs=72.0
Q ss_pred CCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEe
Q 036725 183 QFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVL 258 (392)
Q Consensus 183 ~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~ 258 (392)
.|..++...+.++.+.....++. +|||+|||.|.|+.+.+++ .+.++|+.......+ +.. ...+...+.+..
T Consensus 70 ~YrSRAAfKL~ei~eK~~Lk~~~--~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~p-i~~-~~~g~~ii~~~~ 145 (282)
T 3gcz_A 70 IAVSRGSAKLRWMEERGYVKPTG--IVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKP-IMR-TTLGWNLIRFKD 145 (282)
T ss_dssp BCSSTHHHHHHHHHHTTSCCCCE--EEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCC-CCC-CBTTGGGEEEEC
T ss_pred CEecHHHHHHHHHHHhcCCCCCC--EEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccc-ccc-ccCCCceEEeeC
Confidence 34556666666777666444443 8999999999999988864 567777754211000 000 001222333333
Q ss_pred ccccCCCCCCccceEEeccccc---ccccChH--HHHHHHHHhccCC--eEEEEEc
Q 036725 259 GTIKLPYPSRAFDMAHCSRCLI---PWSANDG--MYMMEIDRVLRPG--GYWVLSG 307 (392)
Q Consensus 259 ~~~~lp~~d~sFDlV~~~~~l~---~~~~d~~--~~L~ei~RvLkPG--G~lvl~~ 307 (392)
+.....++.+.+|+|+|..+.. ++.+... .+|.-+.++|+|| |.|++-.
T Consensus 146 ~~dv~~l~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~Kv 201 (282)
T 3gcz_A 146 KTDVFNMEVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKV 201 (282)
T ss_dssp SCCGGGSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CcchhhcCCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEE
Confidence 3222345678999999986543 1111111 3566678999999 9999954
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=8.4e-05 Score=79.21 Aligned_cols=120 Identities=13% Similarity=0.050 Sum_probs=75.6
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhh-------------------------------------------
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFK------------------------------------------- 225 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~------------------------------------------- 225 (392)
+.+...++.+.....+ ..+||.+||+|.++...+.
T Consensus 176 e~LAa~ll~~~~~~~~--~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~ 253 (703)
T 3v97_A 176 ETLAAAIVMRSGWQPG--TPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLA 253 (703)
T ss_dssp HHHHHHHHHHTTCCTT--SCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCC--CeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccc
Confidence 4455666666654444 3799999999998866543
Q ss_pred ---CCcEEEeCCccChHHHHHHHHHHcCCCc-EEEEeccc-cC--CCCCCccceEEeccccc-cccc--ChHHH---HHH
Q 036725 226 ---KNVITMSFAPRDSHEAQVQFALERGVPA-VIGVLGTI-KL--PYPSRAFDMAHCSRCLI-PWSA--NDGMY---MME 292 (392)
Q Consensus 226 ---~~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~~~~-~l--p~~d~sFDlV~~~~~l~-~~~~--d~~~~---L~e 292 (392)
..++|+|+++.++..+.. .+...|+.. +.+..++. .+ |..+++||+|+++--.- .+.. +...+ +.+
T Consensus 254 ~~~~~i~G~Did~~av~~A~~-N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~ 332 (703)
T 3v97_A 254 EYSSHFYGSDSDARVIQRART-NARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGR 332 (703)
T ss_dssp HCCCCEEEEESCHHHHHHHHH-HHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHH
T ss_pred cCCccEEEEECCHHHHHHHHH-HHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHH
Confidence 268999998876665443 555667754 55666665 55 44445899999984221 1111 12333 444
Q ss_pred HHHhccCCeEEEEEcCCCc
Q 036725 293 IDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 293 i~RvLkPGG~lvl~~p~~~ 311 (392)
+.+.+.|||.+++.++...
T Consensus 333 ~lk~~~~g~~~~ilt~~~~ 351 (703)
T 3v97_A 333 IMKNQFGGWNLSLFSASPD 351 (703)
T ss_dssp HHHHHCTTCEEEEEESCHH
T ss_pred HHHhhCCCCeEEEEeCCHH
Confidence 5555568999999765553
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=97.86 E-value=2e-05 Score=73.52 Aligned_cols=81 Identities=10% Similarity=0.046 Sum_probs=54.5
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-C--cEEEeCCccChHHHHHHHHHHcC--CCcEEEEeccc-c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-N--VITMSFAPRDSHEAQVQFALERG--VPAVIGVLGTI-K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-~--v~~vd~s~~d~~~a~~~~a~~rg--~~~~~~~~~~~-~ 262 (392)
...++.+++.+....+. +|||||||+|.++. +... . ++++|+++. +++.++++. .+++.++.++. .
T Consensus 7 ~~i~~~iv~~~~~~~~~--~VLEIG~G~G~lt~-l~~~~~~~v~avEid~~-----~~~~a~~~~~~~~~v~~i~~D~~~ 78 (252)
T 1qyr_A 7 QFVIDSIVSAINPQKGQ--AMVEIGPGLAALTE-PVGERLDQLTVIELDRD-----LAARLQTHPFLGPKLTIYQQDAMT 78 (252)
T ss_dssp HHHHHHHHHHHCCCTTC--CEEEECCTTTTTHH-HHHTTCSCEEEECCCHH-----HHHHHHTCTTTGGGEEEECSCGGG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEECCCCcHHHH-hhhCCCCeEEEEECCHH-----HHHHHHHHhccCCceEEEECchhh
Confidence 34667777777654544 89999999999999 7654 5 899977654 555555542 24667777776 7
Q ss_pred CCCCCC-----ccceEEecc
Q 036725 263 LPYPSR-----AFDMAHCSR 277 (392)
Q Consensus 263 lp~~d~-----sFDlV~~~~ 277 (392)
+++++. ..|.|+++.
T Consensus 79 ~~~~~~~~~~~~~~~vvsNl 98 (252)
T 1qyr_A 79 FNFGELAEKMGQPLRVFGNL 98 (252)
T ss_dssp CCHHHHHHHHTSCEEEEEEC
T ss_pred CCHHHhhcccCCceEEEECC
Confidence 666432 346777764
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.86 E-value=6.1e-05 Score=80.39 Aligned_cols=104 Identities=9% Similarity=0.037 Sum_probs=68.0
Q ss_pred ceEEEECCcCchHHHHHhhC-------CcEEEeCCccChHHHHHHHHHH-----cCCCcEEEEeccc-cC-CCCCCccce
Q 036725 207 RTALDTGCGVASWGAYLFKK-------NVITMSFAPRDSHEAQVQFALE-----RGVPAVIGVLGTI-KL-PYPSRAFDM 272 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~-------~v~~vd~s~~d~~~a~~~~a~~-----rg~~~~~~~~~~~-~l-p~~d~sFDl 272 (392)
.+|||.|||+|.++..++++ .++|+|+++..+..+..+.... .+.....+..++. .. +.....||+
T Consensus 323 ~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kFDV 402 (878)
T 3s1s_A 323 EVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANVSV 402 (878)
T ss_dssp CEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTEEE
T ss_pred CEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCCCE
Confidence 48999999999999988764 4789999887555542233222 2333323344444 21 234678999
Q ss_pred EEecccccc-ccc--------------------------C-hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 273 AHCSRCLIP-WSA--------------------------N-DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 273 V~~~~~l~~-~~~--------------------------d-~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
|+++--... +.. + ...++..+.+.|+|||++.+..|..
T Consensus 403 VIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s 468 (878)
T 3s1s_A 403 VVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQ 468 (878)
T ss_dssp EEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETH
T ss_pred EEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChH
Confidence 999853311 000 0 1346788999999999999988654
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.81 E-value=1.2e-05 Score=75.29 Aligned_cols=73 Identities=14% Similarity=0.092 Sum_probs=48.9
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCc-------cChHHHHHHHHHHcCC-CcEEEEeccc-c-CC-CCC--Cccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAP-------RDSHEAQVQFALERGV-PAVIGVLGTI-K-LP-YPS--RAFD 271 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~-------~d~~~a~~~~a~~rg~-~~~~~~~~~~-~-lp-~~d--~sFD 271 (392)
.+|||+|||+|.++..|++. .|+++|+++ ..+..+.. .+...++ ..+.++.++. . ++ +++ ++||
T Consensus 85 ~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~-n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~fD 163 (258)
T 2r6z_A 85 PTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALL-NPETQDTAARINLHFGNAAEQMPALVKTQGKPD 163 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHH-SHHHHHHHTTEEEEESCHHHHHHHHHHHHCCCS
T ss_pred CeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHh-HHHhhCCccCeEEEECCHHHHHHhhhccCCCcc
Confidence 38999999999999999987 799999987 43333322 1222233 2266666665 3 33 444 7899
Q ss_pred eEEeccccc
Q 036725 272 MAHCSRCLI 280 (392)
Q Consensus 272 lV~~~~~l~ 280 (392)
+|++...+.
T Consensus 164 ~V~~dP~~~ 172 (258)
T 2r6z_A 164 IVYLDPMYP 172 (258)
T ss_dssp EEEECCCC-
T ss_pred EEEECCCCC
Confidence 999976553
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.79 E-value=2.8e-05 Score=73.62 Aligned_cols=72 Identities=10% Similarity=0.138 Sum_probs=51.0
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--C----cEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--N----VITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI- 261 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~----v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~- 261 (392)
...++.+++.+....+. +|||||||+|.++..|+++ . ++++|+++.++..+..+ + .+++.++.++.
T Consensus 28 ~~i~~~iv~~~~~~~~~--~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~-~----~~~v~~i~~D~~ 100 (279)
T 3uzu_A 28 HGVIDAIVAAIRPERGE--RMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQR-F----GELLELHAGDAL 100 (279)
T ss_dssp HHHHHHHHHHHCCCTTC--EEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHH-H----GGGEEEEESCGG
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHh-c----CCCcEEEECChh
Confidence 34677777777655554 8999999999999999886 5 99999877655544333 1 24556666665
Q ss_pred cCCCCC
Q 036725 262 KLPYPS 267 (392)
Q Consensus 262 ~lp~~d 267 (392)
.+++++
T Consensus 101 ~~~~~~ 106 (279)
T 3uzu_A 101 TFDFGS 106 (279)
T ss_dssp GCCGGG
T ss_pred cCChhH
Confidence 777653
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.79 E-value=8.7e-05 Score=70.67 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=68.0
Q ss_pred CcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHH-cC---CCcEEEEeccc--cCCCCCCccceEE
Q 036725 205 MVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALE-RG---VPAVIGVLGTI--KLPYPSRAFDMAH 274 (392)
Q Consensus 205 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~-rg---~~~~~~~~~~~--~lp~~d~sFDlV~ 274 (392)
..++||=||.|.|..+..+++. .++.+|+++..+..+..-+... .+ -+.+..+.++. -+--..++||+|+
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi 162 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII 162 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEE
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEE
Confidence 3459999999999999999986 5788888664333332222111 11 25566666665 3444578999999
Q ss_pred ecccccccccC----hHHHHHHHHHhccCCeEEEEEc
Q 036725 275 CSRCLIPWSAN----DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 275 ~~~~l~~~~~d----~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
... ..+.... -..+++.+.|.|+|||+++.-.
T Consensus 163 ~D~-~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 163 SDC-TDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp ESC-CCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred EeC-CCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 763 2222111 1478999999999999999854
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.78 E-value=3.3e-05 Score=79.91 Aligned_cols=118 Identities=15% Similarity=0.100 Sum_probs=74.2
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhh-------------------CCcEEEeCCccChHHHHHHHHHHc
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFK-------------------KNVITMSFAPRDSHEAQVQFALER 249 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~-------------------~~v~~vd~s~~d~~~a~~~~a~~r 249 (392)
...++.+++++....+ +|||.+||+|.+...+++ ..++|+|+++....-+..... ..
T Consensus 231 ~~Vv~lmv~ll~p~~~---~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~-l~ 306 (544)
T 3khk_A 231 KSIVTLIVEMLEPYKG---RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMV-IR 306 (544)
T ss_dssp HHHHHHHHHHHCCCSE---EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHhcCCC---eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHH-Hh
Confidence 4567777777654332 899999999998876632 257888776654444443332 24
Q ss_pred CCCcEE-EEecc-ccC-CCCCCccceEEecccccc--ccc-------------------------C-hHHHHHHHHHhcc
Q 036725 250 GVPAVI-GVLGT-IKL-PYPSRAFDMAHCSRCLIP--WSA-------------------------N-DGMYMMEIDRVLR 298 (392)
Q Consensus 250 g~~~~~-~~~~~-~~l-p~~d~sFDlV~~~~~l~~--~~~-------------------------d-~~~~L~ei~RvLk 298 (392)
|+...+ +..++ ... .+++.+||+|+++--+.. |.. + .-.++..+.+.|+
T Consensus 307 gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk 386 (544)
T 3khk_A 307 GIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLA 386 (544)
T ss_dssp TCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEE
T ss_pred CCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhc
Confidence 543322 12333 333 355789999999743321 110 0 1268899999999
Q ss_pred CCeEEEEEcCCC
Q 036725 299 PGGYWVLSGPLI 310 (392)
Q Consensus 299 PGG~lvl~~p~~ 310 (392)
|||++.+..|..
T Consensus 387 ~gGr~aiVlP~g 398 (544)
T 3khk_A 387 PTGSMALLLANG 398 (544)
T ss_dssp EEEEEEEEEETH
T ss_pred cCceEEEEecch
Confidence 999999987654
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00012 Score=75.63 Aligned_cols=127 Identities=13% Similarity=0.067 Sum_probs=78.4
Q ss_pred CCCCccHHHHHHHHHhhCCCC--CCCcceEEEECCcCchHHHHHhhC-------CcEEEeCCccChHHHHHHHHHHcCC-
Q 036725 182 TQFPHGADAYIEELASVIPMD--SGMVRTALDTGCGVASWGAYLFKK-------NVITMSFAPRDSHEAQVQFALERGV- 251 (392)
Q Consensus 182 ~~f~~~~~~~i~~l~~~l~~~--~~~~~~VLDiGCG~G~~~~~L~~~-------~v~~vd~s~~d~~~a~~~~a~~rg~- 251 (392)
.+|+.. ...++.+++++... +....+|||.+||+|.+...+.+. .++|+|+++....-+..+.. ..|+
T Consensus 197 G~fyTP-~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~-l~gi~ 274 (542)
T 3lkd_A 197 GEFYTP-QPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMI-LHGVP 274 (542)
T ss_dssp SSCCCC-HHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHH-HTTCC
T ss_pred Ceeccc-HHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHH-HcCCC
Confidence 344443 33555666555421 122348999999999988766543 68899887765544444332 3455
Q ss_pred -CcEEEEeccc-cC--C-CCCCccceEEeccccc-ccc------c--------------C-hHHHHHHHHHhcc-CCeEE
Q 036725 252 -PAVIGVLGTI-KL--P-YPSRAFDMAHCSRCLI-PWS------A--------------N-DGMYMMEIDRVLR-PGGYW 303 (392)
Q Consensus 252 -~~~~~~~~~~-~l--p-~~d~sFDlV~~~~~l~-~~~------~--------------d-~~~~L~ei~RvLk-PGG~l 303 (392)
+...+..++. .. | ++...||+|+++--+. .|. . + .-.++..+.+.|+ |||++
T Consensus 275 ~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~ 354 (542)
T 3lkd_A 275 IENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVM 354 (542)
T ss_dssp GGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEE
T ss_pred cCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeE
Confidence 3444455544 44 3 4568899999873221 110 0 0 1248899999999 99999
Q ss_pred EEEcCCC
Q 036725 304 VLSGPLI 310 (392)
Q Consensus 304 vl~~p~~ 310 (392)
.++.|..
T Consensus 355 a~VlP~g 361 (542)
T 3lkd_A 355 AIVLPHG 361 (542)
T ss_dssp EEEEETH
T ss_pred EEEecch
Confidence 9987654
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00067 Score=66.45 Aligned_cols=81 Identities=16% Similarity=0.113 Sum_probs=57.6
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWS 283 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~ 283 (392)
.++||+||++|.|+..|.++ .|++||..+.+..- ...+.+.+...+. .+..+.+.||+|+|..+.
T Consensus 213 ~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~l--------~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~---- 280 (375)
T 4auk_A 213 MWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSL--------MDTGQVTWLREDGFKFRPTRSNISWMVCDMVE---- 280 (375)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHHH--------HTTTCEEEECSCTTTCCCCSSCEEEEEECCSS----
T ss_pred CEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChhh--------ccCCCeEEEeCccccccCCCCCcCEEEEcCCC----
Confidence 38999999999999999998 78999987654321 1235566666665 555567789999997543
Q ss_pred cChHHHHHHHHHhccCC
Q 036725 284 ANDGMYMMEIDRVLRPG 300 (392)
Q Consensus 284 ~d~~~~L~ei~RvLkPG 300 (392)
++...+.-+.+.|..|
T Consensus 281 -~p~~~~~l~~~wl~~~ 296 (375)
T 4auk_A 281 -KPAKVAALMAQWLVNG 296 (375)
T ss_dssp -CHHHHHHHHHHHHHTT
T ss_pred -ChHHhHHHHHHHHhcc
Confidence 4555555566655554
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00014 Score=67.58 Aligned_cols=81 Identities=14% Similarity=0.199 Sum_probs=55.5
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP 264 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp 264 (392)
...++.+.+.+....+. +|||||||+|.++..|+++ +++++|+++ .+++.++++...++.++.++. .++
T Consensus 17 ~~i~~~iv~~~~~~~~~--~VLDiG~G~G~lt~~L~~~~~~~v~avEid~-----~~~~~~~~~~~~~v~~i~~D~~~~~ 89 (249)
T 3ftd_A 17 EGVLKKIAEELNIEEGN--TVVEVGGGTGNLTKVLLQHPLKKLYVIELDR-----EMVENLKSIGDERLEVINEDASKFP 89 (249)
T ss_dssp HHHHHHHHHHTTCCTTC--EEEEEESCHHHHHHHHTTSCCSEEEEECCCH-----HHHHHHTTSCCTTEEEECSCTTTCC
T ss_pred HHHHHHHHHhcCCCCcC--EEEEEcCchHHHHHHHHHcCCCeEEEEECCH-----HHHHHHHhccCCCeEEEEcchhhCC
Confidence 45778888888765554 8999999999999999987 578887655 455556555334566666666 777
Q ss_pred CCCCc-cceEEec
Q 036725 265 YPSRA-FDMAHCS 276 (392)
Q Consensus 265 ~~d~s-FDlV~~~ 276 (392)
+++.. ...|+++
T Consensus 90 ~~~~~~~~~vv~N 102 (249)
T 3ftd_A 90 FCSLGKELKVVGN 102 (249)
T ss_dssp GGGSCSSEEEEEE
T ss_pred hhHccCCcEEEEE
Confidence 65421 1245554
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00072 Score=64.01 Aligned_cols=132 Identities=12% Similarity=0.078 Sum_probs=82.1
Q ss_pred eEEEECCcCchHHHHHh---------hCCcEEEeCCccC-------------------------hHHHHHHHHHHcCC--
Q 036725 208 TALDTGCGVASWGAYLF---------KKNVITMSFAPRD-------------------------SHEAQVQFALERGV-- 251 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~---------~~~v~~vd~s~~d-------------------------~~~a~~~~a~~rg~-- 251 (392)
.|||+|+..|..+..|+ .++++++|..... ..+...+..++.|+
T Consensus 109 ~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl~~ 188 (282)
T 2wk1_A 109 DLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDLLD 188 (282)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTCCS
T ss_pred cEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCCCc
Confidence 89999999998776654 3478999864211 01112233344565
Q ss_pred CcEEEEeccc--cCC-CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCchhhhhhhcccChHhHHH
Q 036725 252 PAVIGVLGTI--KLP-YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEE 328 (392)
Q Consensus 252 ~~~~~~~~~~--~lp-~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~~~~~~~~w~~~~e~l~~ 328 (392)
+.+.++.++. .+| +++++||+|+...- .-+....+|..+...|+|||++++... .| |. .
T Consensus 189 ~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~y~~~~~~Le~~~p~L~pGGiIv~DD~--~~------~~-------G 250 (282)
T 2wk1_A 189 EQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---LYESTWDTLTNLYPKVSVGGYVIVDDY--MM------CP-------P 250 (282)
T ss_dssp TTEEEEESCHHHHSTTCCCCCEEEEEECCC---SHHHHHHHHHHHGGGEEEEEEEEESSC--TT------CH-------H
T ss_pred CceEEEEeCHHHHHhhCCCCCEEEEEEcCC---ccccHHHHHHHHHhhcCCCEEEEEcCC--CC------CH-------H
Confidence 5677788776 454 44678999998642 211235789999999999999999653 11 11 1
Q ss_pred HHHHHHHHHHHcCceec--ceeccEEEEEec
Q 036725 329 EQRKIEEIAKLLCWEKK--HEKGETAIWQKR 357 (392)
Q Consensus 329 ~~~~i~~l~~~l~W~~~--~~~~~~~iw~KP 357 (392)
....+.++.+...++.. .......+|+|+
T Consensus 251 ~~~Av~Ef~~~~~i~~~i~~~~~~~v~~rk~ 281 (282)
T 2wk1_A 251 CKDAVDEYRAKFDIADELITIDRDGVYWQRT 281 (282)
T ss_dssp HHHHHHHHHHHTTCCSCCEECSSSCEEEECC
T ss_pred HHHHHHHHHHhcCCceEEEEecCEEEEEEeC
Confidence 12345555555555433 333457888885
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=7.4e-05 Score=70.75 Aligned_cols=119 Identities=16% Similarity=0.117 Sum_probs=69.6
Q ss_pred CCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEe
Q 036725 183 QFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVL 258 (392)
Q Consensus 183 ~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~ 258 (392)
.|..++...+.++.+. .... ...+|||+||++|.|+..++++ .|.++|+...+...... ....+.+.+....
T Consensus 61 ~yrSRaa~KL~ei~ek-~l~~-~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~--~~~~~~~iv~~~~ 136 (300)
T 3eld_A 61 ISVSRGAAKIRWLHER-GYLR-ITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH--MQTLGWNIVKFKD 136 (300)
T ss_dssp CCSSTTHHHHHHHHHH-TSCC-CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC--CCBTTGGGEEEEC
T ss_pred CccchHHHHHHHHHHh-CCCC-CCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc--ccccCCceEEeec
Confidence 3455555555566665 4333 3459999999999999999985 46677775321100000 0000112233332
Q ss_pred ccccCCCCCCccceEEecccccccccCh-------HHHHHHHHHhccCC-eEEEEEc
Q 036725 259 GTIKLPYPSRAFDMAHCSRCLIPWSAND-------GMYMMEIDRVLRPG-GYWVLSG 307 (392)
Q Consensus 259 ~~~~lp~~d~sFDlV~~~~~l~~~~~d~-------~~~L~ei~RvLkPG-G~lvl~~ 307 (392)
+.....+..+.+|+|+|..+.. .... ..+|.-+.++|+|| |.|++-.
T Consensus 137 ~~di~~l~~~~~DlVlsD~APn--sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~Kv 191 (300)
T 3eld_A 137 KSNVFTMPTEPSDTLLCDIGES--SSNPLVERDRTMKVLENFERWKHVNTENFCVKV 191 (300)
T ss_dssp SCCTTTSCCCCCSEEEECCCCC--CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEE
T ss_pred CceeeecCCCCcCEEeecCcCC--CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEe
Confidence 2222334567899999975442 1111 13566678999999 9999964
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00018 Score=75.35 Aligned_cols=97 Identities=11% Similarity=-0.004 Sum_probs=61.4
Q ss_pred CcceEEEECCcCchHH---HHHhhC-----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCCCCCCccceEE
Q 036725 205 MVRTALDTGCGVASWG---AYLFKK-----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLPYPSRAFDMAH 274 (392)
Q Consensus 205 ~~~~VLDiGCG~G~~~---~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp~~d~sFDlV~ 274 (392)
....|||||||+|.+. ...+++ +|++++.++. .....+..++++. ..+.++.++. ++..| +++|+|+
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~--A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIV 433 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN--AVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIV 433 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH--HHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEE
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH--HHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEE
Confidence 3457999999999773 333332 5789998763 3333344445554 4566677666 55444 5799999
Q ss_pred ecccccc-cccChHHHHHHHHHhccCCeEEE
Q 036725 275 CSRCLIP-WSANDGMYMMEIDRVLRPGGYWV 304 (392)
Q Consensus 275 ~~~~l~~-~~~d~~~~L~ei~RvLkPGG~lv 304 (392)
+-.+-.- ..+....+|....|.|||||.++
T Consensus 434 SEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 434 SELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 7432111 11122467888899999999875
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00019 Score=67.18 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=58.6
Q ss_pred cceEEEECCcCchHHHHHhh----------------CCcEEEeCCcc---ChHHH------HHHHHHH---c--------
Q 036725 206 VRTALDTGCGVASWGAYLFK----------------KNVITMSFAPR---DSHEA------QVQFALE---R-------- 249 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~----------------~~v~~vd~s~~---d~~~a------~~~~a~~---r-------- 249 (392)
..+|||||+|+|..+..+++ .++++++..+. ++..+ ....+++ .
T Consensus 61 ~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~ 140 (257)
T 2qy6_A 61 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 140 (257)
T ss_dssp EEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEE
T ss_pred CCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccch
Confidence 34899999999987765432 26788888763 22211 0011211 1
Q ss_pred -------CCCcEEEEeccc--cCCCCC----CccceEEeccccccc-ccC--hHHHHHHHHHhccCCeEEEE
Q 036725 250 -------GVPAVIGVLGTI--KLPYPS----RAFDMAHCSRCLIPW-SAN--DGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 250 -------g~~~~~~~~~~~--~lp~~d----~sFDlV~~~~~l~~~-~~d--~~~~L~ei~RvLkPGG~lvl 305 (392)
+...+....++. -++.-+ ..||+|+... +.+- .++ ...+|.++.|+|||||+|+.
T Consensus 141 ~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~-fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 141 HRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG-FAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS-SCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC-CCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 112334555554 244322 2799999752 2111 112 26799999999999999986
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=3.1e-05 Score=74.14 Aligned_cols=82 Identities=11% Similarity=0.052 Sum_probs=53.5
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC--
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP-- 264 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp-- 264 (392)
++.+++.+...++. +|||+|||+|.++..++++ .++++|.++.++..+..+ +...+ ..+.++.++. .++
T Consensus 15 l~e~l~~L~~~~g~--~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~-~~~~g-~~v~~v~~d~~~l~~~ 90 (301)
T 1m6y_A 15 VREVIEFLKPEDEK--IILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEK-LKEFS-DRVSLFKVSYREADFL 90 (301)
T ss_dssp HHHHHHHHCCCTTC--EEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHH-TGGGT-TTEEEEECCGGGHHHH
T ss_pred HHHHHHhcCCCCCC--EEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH-HHhcC-CcEEEEECCHHHHHHH
Confidence 44455555544443 8999999999999999875 688998877655443332 22233 4566677665 543
Q ss_pred CC---CCccceEEecc
Q 036725 265 YP---SRAFDMAHCSR 277 (392)
Q Consensus 265 ~~---d~sFDlV~~~~ 277 (392)
++ .++||.|++..
T Consensus 91 l~~~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 91 LKTLGIEKVDGILMDL 106 (301)
T ss_dssp HHHTTCSCEEEEEEEC
T ss_pred HHhcCCCCCCEEEEcC
Confidence 11 25799998753
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.50 E-value=7.9e-05 Score=69.77 Aligned_cols=106 Identities=9% Similarity=0.038 Sum_probs=61.8
Q ss_pred HHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHH--HHHHHHHHc----C-C-CcEEEEeccc-c
Q 036725 194 ELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHE--AQVQFALER----G-V-PAVIGVLGTI-K 262 (392)
Q Consensus 194 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~--a~~~~a~~r----g-~-~~~~~~~~~~-~ 262 (392)
.+.+.+....+...+|||+|||+|..+..++.+ .|+++|.++....- ..++.+.++ + + ..+.++.++. .
T Consensus 77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~ 156 (258)
T 2oyr_A 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (258)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHH
Confidence 344455444441238999999999999999876 89999997742211 112222211 1 2 3456666665 3
Q ss_pred -CCCCCCccceEEecccccccccChHHHHHHHHHhccCCe
Q 036725 263 -LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGG 301 (392)
Q Consensus 263 -lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG 301 (392)
++....+||+|++...+.+ . .....+++..++||+.+
T Consensus 157 ~L~~~~~~fDvV~lDP~y~~-~-~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 157 ALTDITPRPQVVYLDPMFPH-K-QKSALVKKEMRVFQSLV 194 (258)
T ss_dssp HSTTCSSCCSEEEECCCCCC-C-CC-----HHHHHHHHHS
T ss_pred HHHhCcccCCEEEEcCCCCC-c-ccchHHHHHHHHHHHhh
Confidence 4432347999999866532 2 23356777778887755
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0002 Score=75.41 Aligned_cols=97 Identities=11% Similarity=0.028 Sum_probs=60.0
Q ss_pred cceEEEECCcCchHHHH---H---hh---------C--CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCCCC
Q 036725 206 VRTALDTGCGVASWGAY---L---FK---------K--NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLPYP 266 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~---L---~~---------~--~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp~~ 266 (392)
...|||||||+|.+... . +. . +|++++.++..+...+... ..+. ..+.++.++. ++..|
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~--~Ng~~d~VtVI~gd~eev~lp 487 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMN--VRTWKRRVTIIESDMRSLPGI 487 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHH--HHTTTTCSEEEESCGGGHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHH--hcCCCCeEEEEeCchhhcccc
Confidence 34799999999988521 1 22 2 7899998764333222222 2443 3355566555 44442
Q ss_pred -----CCccceEEeccccccccc--ChHHHHHHHHHhccCCeEEEE
Q 036725 267 -----SRAFDMAHCSRCLIPWSA--NDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 267 -----d~sFDlV~~~~~l~~~~~--d~~~~L~ei~RvLkPGG~lvl 305 (392)
.+.+|+|++-..- .+.. -....|..+.|.|||||+++=
T Consensus 488 ~~~~~~ekVDIIVSElmG-sfl~nEL~pe~Ld~v~r~Lkp~Gi~iP 532 (745)
T 3ua3_A 488 AKDRGFEQPDIIVSELLG-SFGDNELSPECLDGVTGFLKPTTISIP 532 (745)
T ss_dssp HHHTTCCCCSEEEECCCB-TTBGGGSHHHHHHTTGGGSCTTCEEES
T ss_pred cccCCCCcccEEEEeccc-cccchhccHHHHHHHHHhCCCCcEEEC
Confidence 4789999986432 2221 124688888999999998653
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00053 Score=63.63 Aligned_cols=116 Identities=18% Similarity=0.196 Sum_probs=69.3
Q ss_pred CCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHH-cCCCcEEEE
Q 036725 183 QFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALE-RGVPAVIGV 257 (392)
Q Consensus 183 ~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~-rg~~~~~~~ 257 (392)
.|..++...+.+|.+..-..++ .+|||+||+.|+|+.+.+++ .|.+.++.. |.+..- .... .|...+.+.
T Consensus 53 ~yRSRAayKL~EIdeK~likpg--~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~-D~~~~P--~~~~~~Gv~~i~~~ 127 (269)
T 2px2_A 53 HPVSRGTAKLRWLVERRFVQPI--GKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGG-PGHEEP--MLMQSYGWNIVTMK 127 (269)
T ss_dssp CCSSTHHHHHHHHHHTTSCCCC--EEEEEETCTTSHHHHHHTTSTTEEEEEEECCCS-TTSCCC--CCCCSTTGGGEEEE
T ss_pred CcccHHHHHHHHHHHcCCCCCC--CEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcc-ccccCC--CcccCCCceEEEee
Confidence 4677777777777777533334 39999999999999999987 234555543 311000 0000 232334445
Q ss_pred ec-cccCCCCCCccceEEecccccccccCh----H---HHHHHHHHhccCCe-EEEEE
Q 036725 258 LG-TIKLPYPSRAFDMAHCSRCLIPWSAND----G---MYMMEIDRVLRPGG-YWVLS 306 (392)
Q Consensus 258 ~~-~~~lp~~d~sFDlV~~~~~l~~~~~d~----~---~~L~ei~RvLkPGG-~lvl~ 306 (392)
.+ +... .+...+|+|+|...- . .... . .+|.=+.++|+||| .|++=
T Consensus 128 ~G~Df~~-~~~~~~DvVLSDMAP-n-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvK 182 (269)
T 2px2_A 128 SGVDVFY-KPSEISDTLLCDIGE-S-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIK 182 (269)
T ss_dssp CSCCGGG-SCCCCCSEEEECCCC-C-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred ccCCccC-CCCCCCCEEEeCCCC-C-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Confidence 45 5421 235679999997533 1 2111 1 24555668999999 88884
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00097 Score=60.00 Aligned_cols=91 Identities=11% Similarity=-0.033 Sum_probs=58.0
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC---CcEEEEeccc-c---------------CC
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV---PAVIGVLGTI-K---------------LP 264 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~---~~~~~~~~~~-~---------------lp 264 (392)
++|||+||| +.+..|++. .|+++|.++.-...+ .+..++.|+ ..+.+..++. . ++
T Consensus 32 ~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~a-r~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~ 108 (202)
T 3cvo_A 32 EVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMM-KAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYP 108 (202)
T ss_dssp SEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHH-HHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTT
T ss_pred CEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHH-HHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHH
Confidence 389999985 566666653 788998876433333 333344553 3455555553 1 22
Q ss_pred --------C-CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 265 --------Y-PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 265 --------~-~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
. ..++||+|+...- .....+..+.+.|||||++++.
T Consensus 109 ~~~~~i~~~~~~~~fDlIfIDg~------k~~~~~~~~l~~l~~GG~Iv~D 153 (202)
T 3cvo_A 109 DYPLAVWRTEGFRHPDVVLVDGR------FRVGCALATAFSITRPVTLLFD 153 (202)
T ss_dssp HHHHGGGGCTTCCCCSEEEECSS------SHHHHHHHHHHHCSSCEEEEET
T ss_pred HHhhhhhccccCCCCCEEEEeCC------CchhHHHHHHHhcCCCeEEEEe
Confidence 2 2378999997642 2235667778999999999774
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00059 Score=58.07 Aligned_cols=92 Identities=15% Similarity=0.201 Sum_probs=61.3
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCc-hHHHHHhh-C--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVA-SWGAYLFK-K--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP 264 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G-~~~~~L~~-~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp 264 (392)
+.+.+.+.+.+. .+. +|||||||.| ..+..|++ . .|+++|+++..+. ++.++.--|
T Consensus 23 e~LaeYI~~~~~--~~~--rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~----------------~v~dDiF~P 82 (153)
T 2k4m_A 23 NDLAVYIIRCSG--PGT--RVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG----------------IVRDDITSP 82 (153)
T ss_dssp HHHHHHHHHHSC--SSS--EEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT----------------EECCCSSSC
T ss_pred HHHHHHHHhcCC--CCC--cEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc----------------eEEccCCCC
Confidence 344555555543 222 8999999999 69999987 5 5899999886443 466666445
Q ss_pred CCC--CccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 265 YPS--RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 265 ~~d--~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
..+ ..||+|.+.+ -+.+....+.++.+.+ |.-+++.
T Consensus 83 ~~~~Y~~~DLIYsir----PP~El~~~i~~lA~~v--~adliI~ 120 (153)
T 2k4m_A 83 RMEIYRGAALIYSIR----PPAEIHSSLMRVADAV--GARLIIK 120 (153)
T ss_dssp CHHHHTTEEEEEEES----CCTTTHHHHHHHHHHH--TCEEEEE
T ss_pred cccccCCcCEEEEcC----CCHHHHHHHHHHHHHc--CCCEEEE
Confidence 443 4899998764 2336666666666654 5666664
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00014 Score=72.46 Aligned_cols=69 Identities=16% Similarity=0.021 Sum_probs=50.8
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc--CCCcEEEEeccc-c-CCC-CCCccceEEec
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER--GVPAVIGVLGTI-K-LPY-PSRAFDMAHCS 276 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r--g~~~~~~~~~~~-~-lp~-~d~sFDlV~~~ 276 (392)
.+|||+|||+|..+..|++. .|+++|+++.++..+..+ +... |+.++.++.++. . ++. ++++||+|++.
T Consensus 95 ~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N-~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 95 TKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHN-IPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp CEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHH-HHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHh-HHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 48999999999999999877 799999988766554443 3333 666677777776 3 232 34689999986
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00064 Score=64.19 Aligned_cols=118 Identities=18% Similarity=0.190 Sum_probs=73.4
Q ss_pred CCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEE
Q 036725 182 TQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGV 257 (392)
Q Consensus 182 ~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~ 257 (392)
..|...+...+..+.+......+. +|||+||++|.|+.+.+.+ .|.++|+......+.+. ....+-+.+.+.
T Consensus 73 g~y~SR~~~KL~ei~~~~~l~~~~--~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~--~~ql~w~lV~~~ 148 (321)
T 3lkz_A 73 GHPVSRGTAKLRWLVERRFLEPVG--KVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQL--VQSYGWNIVTMK 148 (321)
T ss_dssp CCCSSTHHHHHHHHHHTTSCCCCE--EEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCC--CCBTTGGGEEEE
T ss_pred CCccchHHHHHHHHHHhcCCCCCC--EEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcch--hhhcCCcceEEE
Confidence 346666666677777765554444 8999999999999988776 68899886542211000 011222335555
Q ss_pred ec-cc-cCCCCCCccceEEecccccccccCh----H---HHHHHHHHhccCC-eEEEEEc
Q 036725 258 LG-TI-KLPYPSRAFDMAHCSRCLIPWSAND----G---MYMMEIDRVLRPG-GYWVLSG 307 (392)
Q Consensus 258 ~~-~~-~lp~~d~sFDlV~~~~~l~~~~~d~----~---~~L~ei~RvLkPG-G~lvl~~ 307 (392)
.+ +. .++ ...+|+|+|... . -...+ . .+|.-+.+.|++| |-|++-+
T Consensus 149 ~~~Dv~~l~--~~~~D~ivcDig-e-Ss~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KV 204 (321)
T 3lkz_A 149 SGVDVFYRP--SECCDTLLCDIG-E-SSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKV 204 (321)
T ss_dssp CSCCTTSSC--CCCCSEEEECCC-C-CCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred eccCHhhCC--CCCCCEEEEECc-c-CCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEE
Confidence 55 32 443 266999999754 2 22232 1 3566667889998 8888843
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0026 Score=65.50 Aligned_cols=125 Identities=16% Similarity=0.169 Sum_probs=76.9
Q ss_pred CCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhh-----------------CCcEEEeCCccChHHHHHH
Q 036725 182 TQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFK-----------------KNVITMSFAPRDSHEAQVQ 244 (392)
Q Consensus 182 ~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~-----------------~~v~~vd~s~~d~~~a~~~ 244 (392)
.+|+.. ...++.+++++....+. +|+|-.||+|.|.....+ ..+.|.|+.+....-+...
T Consensus 197 GqfyTP-~~Vv~lmv~l~~p~~~~--~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mN 273 (530)
T 3ufb_A 197 GEFYTP-RPVVRFMVEVMDPQLGE--SVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMN 273 (530)
T ss_dssp CCCCCC-HHHHHHHHHHHCCCTTC--CEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHH
T ss_pred ceECCc-HHHHHHHHHhhccCCCC--EEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHH
Confidence 345443 45778888888755554 899999999999865543 2588998866544444443
Q ss_pred HHHHcCCCcEEEEecc-ccCCC----CCCccceEEecccccc-c--------c-----cCh-HHHHHHHHHhcc------
Q 036725 245 FALERGVPAVIGVLGT-IKLPY----PSRAFDMAHCSRCLIP-W--------S-----AND-GMYMMEIDRVLR------ 298 (392)
Q Consensus 245 ~a~~rg~~~~~~~~~~-~~lp~----~d~sFDlV~~~~~l~~-~--------~-----~d~-~~~L~ei~RvLk------ 298 (392)
... +|.....+..++ ...|+ +...||+|+++--+.. + . .+. ..++..+.+.||
T Consensus 274 l~l-hg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l 352 (530)
T 3ufb_A 274 LLL-HGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGS 352 (530)
T ss_dssp HHH-HTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSS
T ss_pred HHh-cCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhcc
Confidence 333 344332233333 24332 2457999999843310 0 0 011 256777888887
Q ss_pred -CCeEEEEEcCCC
Q 036725 299 -PGGYWVLSGPLI 310 (392)
Q Consensus 299 -PGG~lvl~~p~~ 310 (392)
|||++.++.|..
T Consensus 353 ~~gGr~avVlP~g 365 (530)
T 3ufb_A 353 DNGGRAAVVVPNG 365 (530)
T ss_dssp SSCCEEEEEEEHH
T ss_pred CCCceEEEEecch
Confidence 799999987643
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00086 Score=61.44 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=74.9
Q ss_pred CCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEe
Q 036725 183 QFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVL 258 (392)
Q Consensus 183 ~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~ 258 (392)
.|..++...+..+.+......+. +|||+||++|.|+.+.+.+ .|.++|+.+....+.+ .....|-+.+.+..
T Consensus 58 ~yrSRa~~KL~ei~ek~~l~~g~--~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~--~~~s~gwn~v~fk~ 133 (267)
T 3p8z_A 58 HAVSRGSAKLQWFVERNMVIPEG--RVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV--PMSTYGWNIVKLMS 133 (267)
T ss_dssp CCSSTHHHHHHHHHHTTSSCCCE--EEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC--CCCCTTTTSEEEEC
T ss_pred CccchHHHHHHHHHHhcCCCCCC--EEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc--hhhhcCcCceEEEe
Confidence 45566666777777776544443 8999999999999988776 6889998764332111 11234556777777
Q ss_pred c-cc-cCCCCCCccceEEecccccccccCh----H---HHHHHHHHhccCCeEEEEE
Q 036725 259 G-TI-KLPYPSRAFDMAHCSRCLIPWSAND----G---MYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 259 ~-~~-~lp~~d~sFDlV~~~~~l~~~~~d~----~---~~L~ei~RvLkPGG~lvl~ 306 (392)
+ +. .++ ...+|.|+|...= -..++ . .+|.-+.+.|++ |-|++-
T Consensus 134 gvDv~~~~--~~~~DtllcDIge--Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~K 185 (267)
T 3p8z_A 134 GKDVFYLP--PEKCDTLLCDIGE--SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIK 185 (267)
T ss_dssp SCCGGGCC--CCCCSEEEECCCC--CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEE
T ss_pred ccceeecC--CccccEEEEecCC--CCCChhhhhhHHHHHHHHHHHhccc-CCEEEE
Confidence 7 53 443 3669999997432 22222 1 356666788998 677664
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00093 Score=65.64 Aligned_cols=112 Identities=15% Similarity=0.109 Sum_probs=68.2
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcC---------C---CcE
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERG---------V---PAV 254 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg---------~---~~~ 254 (392)
.|.+.+.. .+......++||=||.|.|..+..+++. .++.+|+++ ..++.+++.- . +.+
T Consensus 191 ~Y~e~l~h-~~l~~~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp-----~VVe~ar~yfp~~~~~~~d~pr~~rv 264 (381)
T 3c6k_A 191 AYTRAIMG-SGKEDYTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQ-----MVIDGCKKYMRKTCGDVLDNLKGDCY 264 (381)
T ss_dssp HHHHHHTT-TTCCCCTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCH-----HHHHHHHHHCCC----CCSSSEETTE
T ss_pred HHHHHHHH-HHhhcCCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCH-----HHHHHHHhhchhhhhhhhccccccce
Confidence 34444443 3333334569999999999999999886 577777755 3455555421 0 224
Q ss_pred EEEeccc-c-C---CCCCCccceEEecccccccccC---------hHHHHHHHHHhccCCeEEEEEc
Q 036725 255 IGVLGTI-K-L---PYPSRAFDMAHCSRCLIPWSAN---------DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 255 ~~~~~~~-~-l---p~~d~sFDlV~~~~~l~~~~~d---------~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..+.++. . + .-..++||+|+....-.+...+ ...+++.+.++|+|||+++.-.
T Consensus 265 ~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 265 QVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp EEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 4444443 1 1 1134689999976321111111 1367888999999999998743
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0023 Score=62.60 Aligned_cols=110 Identities=14% Similarity=0.052 Sum_probs=67.2
Q ss_pred CCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC------CcEEEEeccc-cCC-CC
Q 036725 199 IPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV------PAVIGVLGTI-KLP-YP 266 (392)
Q Consensus 199 l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~------~~~~~~~~~~-~lp-~~ 266 (392)
+...+|. +|||+.+|.|.=+..|++. .++++|+++.-+.. ..+.....+. .++.....+. .++ ..
T Consensus 144 L~~~pg~--~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~-l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~ 220 (359)
T 4fzv_A 144 LGLQPGD--IVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIAR-LQKILHSYVPEEIRDGNQVRVTSWDGRKWGELE 220 (359)
T ss_dssp HCCCTTE--EEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHH-HHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHS
T ss_pred hCCCCCC--EEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHH-HHHHHHHhhhhhhccCCceEEEeCchhhcchhc
Confidence 3434444 8999999999988888876 57888776532222 2223333232 2344444443 332 34
Q ss_pred CCccceEEe----cc---cccc--------cccC--------hHHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 267 SRAFDMAHC----SR---CLIP--------WSAN--------DGMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 267 d~sFDlV~~----~~---~l~~--------~~~d--------~~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
.+.||.|++ +. .... +... ...+|....+.|||||+++.++....
T Consensus 221 ~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 221 GDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp TTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred cccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 678999994 32 1111 1100 12688899999999999999986663
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.021 Score=54.00 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=39.0
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHH
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQ 244 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~ 244 (392)
..+++.+++... ..+. .|||++||+|+.+..+++. +++++|+++..+..+..+
T Consensus 222 ~~l~~~~i~~~~-~~~~--~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r 276 (297)
T 2zig_A 222 LELAERLVRMFS-FVGD--VVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKER 276 (297)
T ss_dssp HHHHHHHHHHHC-CTTC--EEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCC--EEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHH
Confidence 456777777665 2443 8999999999999888875 799998887655544443
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0042 Score=74.69 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=42.6
Q ss_pred ceEEEECCcCchHHHHHhhC---------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc-CCCCCCccceEEec
Q 036725 207 RTALDTGCGVASWGAYLFKK---------NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-LPYPSRAFDMAHCS 276 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~-lp~~d~sFDlV~~~ 276 (392)
.+||+||.|+|..+..+.+. .++..|+++.-...++.++.. +.......+... .++...+||+|+++
T Consensus 1242 ~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~---~di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A 1242 MKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ---LHVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp EEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH---HTEEEECCCSSCCCC-----CCEEEEE
T ss_pred ceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh---cccccccccccccccCCCCceeEEEEc
Confidence 48999999999766544321 456667765444333333321 111111112212 23456789999999
Q ss_pred ccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 277 RCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 277 ~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.++ |-..+....|.++.++|||||++++...
T Consensus 1319 ~vl-~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1319 CAL-ATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp CC---------------------CCEEEEEEC
T ss_pred ccc-cccccHHHHHHHHHHhcCCCcEEEEEec
Confidence 888 4455778899999999999999988653
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.013 Score=55.21 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=51.2
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC----
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP---- 264 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp---- 264 (392)
++.+++.+...++. .+||.+||.|..+..|+++ .++++|.++..+. .+++...+.+.++.++. .++
T Consensus 11 l~e~le~L~~~~gg--~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~-----~A~~L~~~rv~lv~~~f~~l~~~L~ 83 (285)
T 1wg8_A 11 YQEALDLLAVRPGG--VYVDATLGGAGHARGILERGGRVIGLDQDPEAVA-----RAKGLHLPGLTVVQGNFRHLKRHLA 83 (285)
T ss_dssp HHHHHHHHTCCTTC--EEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHH-----HHHHTCCTTEEEEESCGGGHHHHHH
T ss_pred HHHHHHhhCCCCCC--EEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHH-----HHHhhccCCEEEEECCcchHHHHHH
Confidence 44455555544444 8999999999999999986 7889988765333 33331114566777765 332
Q ss_pred -CCCCccceEEec
Q 036725 265 -YPSRAFDMAHCS 276 (392)
Q Consensus 265 -~~d~sFDlV~~~ 276 (392)
...++||.|+..
T Consensus 84 ~~g~~~vDgIL~D 96 (285)
T 1wg8_A 84 ALGVERVDGILAD 96 (285)
T ss_dssp HTTCSCEEEEEEE
T ss_pred HcCCCCcCEEEeC
Confidence 123579999864
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.076 Score=50.21 Aligned_cols=89 Identities=9% Similarity=-0.040 Sum_probs=54.1
Q ss_pred cceEEEECC------cCchHHHH-HhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEec
Q 036725 206 VRTALDTGC------GVASWGAY-LFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCS 276 (392)
Q Consensus 206 ~~~VLDiGC------G~G~~~~~-L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~ 276 (392)
..+|||+|+ -.|++... +... .++++|+.+... ... .++.++.......+.||+|+|.
T Consensus 110 gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s------------da~-~~IqGD~~~~~~~~k~DLVISD 176 (344)
T 3r24_A 110 NMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS------------DAD-STLIGDCATVHTANKWDLIISD 176 (344)
T ss_dssp TCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC------------SSS-EEEESCGGGEEESSCEEEEEEC
T ss_pred CCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc------------CCC-eEEEccccccccCCCCCEEEec
Confidence 349999996 56775332 3333 578888876532 112 3366665322335789999986
Q ss_pred cccc---cc------ccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 277 RCLI---PW------SAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 277 ~~l~---~~------~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..-- +. .... +.++.=+.++|+|||.|++=.
T Consensus 177 MAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKV 217 (344)
T 3r24_A 177 MYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI 217 (344)
T ss_dssp CCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEE
Confidence 3321 00 0112 456666788999999999953
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=91.12 E-value=0.7 Score=43.91 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=32.7
Q ss_pred EEeccc--cCC-CCCCccceEEecccccccc-cCh--HHHHHHHHHhccCCeEEEE
Q 036725 256 GVLGTI--KLP-YPSRAFDMAHCSRCLIPWS-AND--GMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 256 ~~~~~~--~lp-~~d~sFDlV~~~~~l~~~~-~d~--~~~L~ei~RvLkPGG~lvl 305 (392)
+..++. .++ +++..||+|+-.. +.+-. ++. ..+++++.++++|||.|+-
T Consensus 170 l~~GDa~~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laT 224 (308)
T 3vyw_A 170 VLLGDARKRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVS 224 (308)
T ss_dssp EEESCHHHHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred EEechHHHHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 344554 343 3456899999763 32222 122 5899999999999999875
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=90.77 E-value=0.14 Score=49.71 Aligned_cols=48 Identities=13% Similarity=0.091 Sum_probs=35.6
Q ss_pred HHHHHHHHhhCCCCCC----CcceEEEECCcCchHHHHHhhC----CcEEEeCCcc
Q 036725 189 DAYIEELASVIPMDSG----MVRTALDTGCGVASWGAYLFKK----NVITMSFAPR 236 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~----~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~ 236 (392)
...++.|++.+..... ....|||||.|.|.++..|+++ ++++++++..
T Consensus 38 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~ 93 (353)
T 1i4w_A 38 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSS 93 (353)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHH
T ss_pred HHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHH
Confidence 4566777777654321 2348999999999999999963 7999988653
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=90.52 E-value=0.71 Score=44.05 Aligned_cols=91 Identities=16% Similarity=0.091 Sum_probs=58.4
Q ss_pred CCCCCCCcceEEEECCcC-chHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEE
Q 036725 199 IPMDSGMVRTALDTGCGV-ASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAH 274 (392)
Q Consensus 199 l~~~~~~~~~VLDiGCG~-G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~ 274 (392)
.....++ +||-+|+|. |.++..+++. +|++++.++. ..+.+++.|...++ .+...+ .. .+|+|+
T Consensus 172 ~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~-----~~~~~~~lGa~~v~--~~~~~~--~~-~~D~vi 239 (348)
T 3two_A 172 SKVTKGT--KVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEH-----KKQDALSMGVKHFY--TDPKQC--KE-ELDFII 239 (348)
T ss_dssp TTCCTTC--EEEEESCSHHHHHHHHHHHHTTCEEEEECSSST-----THHHHHHTTCSEEE--SSGGGC--CS-CEEEEE
T ss_pred cCCCCCC--EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH-----HHHHHHhcCCCeec--CCHHHH--hc-CCCEEE
Confidence 3444454 899899874 7777777764 6777765543 44567777765544 222222 22 799998
Q ss_pred ecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 275 CSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 275 ~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
-...- . ..+.+..++|++||.+++.+.
T Consensus 240 d~~g~-~------~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 240 STIPT-H------YDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp ECCCS-C------CCHHHHHTTEEEEEEEEECCC
T ss_pred ECCCc-H------HHHHHHHHHHhcCCEEEEECC
Confidence 64321 1 136788899999999999753
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.06 E-value=0.38 Score=46.43 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=59.8
Q ss_pred hhCCCCCCCcceEEEECCcC-chHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc----C-CCC
Q 036725 197 SVIPMDSGMVRTALDTGCGV-ASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK----L-PYP 266 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiGCG~-G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~----l-p~~ 266 (392)
+......++ +||-+|+|. |.++..+++. .|++++.+ +...+.+++.|...++ ...... + ...
T Consensus 184 ~~~~~~~g~--~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~-----~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~~~ 255 (371)
T 1f8f_A 184 NALKVTPAS--SFVTWGAGAVGLSALLAAKVCGASIIIAVDIV-----ESRLELAKQLGATHVI-NSKTQDPVAAIKEIT 255 (371)
T ss_dssp TTTCCCTTC--EEEEESCSHHHHHHHHHHHHHTCSEEEEEESC-----HHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHT
T ss_pred hccCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEECCC-----HHHHHHHHHcCCCEEe-cCCccCHHHHHHHhc
Confidence 344444444 899999875 7777777764 36777553 3456677777754332 211111 0 011
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+.||+|+-.-. ....+.+..+.|++||.+++.+
T Consensus 256 ~gg~D~vid~~g-------~~~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 256 DGGVNFALESTG-------SPEILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp TSCEEEEEECSC-------CHHHHHHHHHTEEEEEEEEECC
T ss_pred CCCCcEEEECCC-------CHHHHHHHHHHHhcCCEEEEeC
Confidence 236999985421 1346788999999999999865
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=89.91 E-value=2.2 Score=39.33 Aligned_cols=108 Identities=13% Similarity=0.104 Sum_probs=66.1
Q ss_pred HHHhhCCCCCCCcceEEEECCcCchHHHHHhh-----------CCcEEEeCCccChH----------------------H
Q 036725 194 ELASVIPMDSGMVRTALDTGCGVASWGAYLFK-----------KNVITMSFAPRDSH----------------------E 240 (392)
Q Consensus 194 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~-----------~~v~~vd~s~~d~~----------------------~ 240 (392)
.+.+.+...+| .|+|+|+-.|..+..++. +++.+.|.-..... .
T Consensus 61 ~l~~~i~~vpG---~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~ 137 (257)
T 3tos_A 61 ALYRQVLDVPG---VIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYP 137 (257)
T ss_dssp HHHHHTTTSCS---EEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHH
T ss_pred HHHHHhhCCCC---eEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhH
Confidence 33444444455 799999999976665432 58899983211110 0
Q ss_pred HHHHHH---HH----cCC--CcEEEEeccc--cCC-----CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEE
Q 036725 241 AQVQFA---LE----RGV--PAVIGVLGTI--KLP-----YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWV 304 (392)
Q Consensus 241 a~~~~a---~~----rg~--~~~~~~~~~~--~lp-----~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lv 304 (392)
..++.. .+ .+. ..+.++.+.. .+| .+..+||+|+...- .-......+..+...|+|||+++
T Consensus 138 ~~l~~~l~~~~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D---~Y~~t~~~le~~~p~l~~GGvIv 214 (257)
T 3tos_A 138 AYLKEVLDAHECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD---LYEPTKAVLEAIRPYLTKGSIVA 214 (257)
T ss_dssp HHHHHHHHHHHTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC---CHHHHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHHhhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc---ccchHHHHHHHHHHHhCCCcEEE
Confidence 111111 11 122 5677777776 343 34668999998642 21133567889999999999999
Q ss_pred EEc
Q 036725 305 LSG 307 (392)
Q Consensus 305 l~~ 307 (392)
+..
T Consensus 215 ~DD 217 (257)
T 3tos_A 215 FDE 217 (257)
T ss_dssp ESS
T ss_pred EcC
Confidence 975
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.17 E-value=0.46 Score=43.69 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=33.6
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCcc
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPR 236 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~ 236 (392)
..+++.+++... ..+. .|||..||+|+.+....+. +++++|+++.
T Consensus 199 ~~l~~~~i~~~~-~~~~--~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~ 245 (260)
T 1g60_A 199 RDLIERIIRASS-NPND--LVLDCFMGSGTTAIVAKKLGRNFIGCDMNAE 245 (260)
T ss_dssp HHHHHHHHHHHC-CTTC--EEEESSCTTCHHHHHHHHTTCEEEEEESCHH
T ss_pred HHHHHHHHHHhC-CCCC--EEEECCCCCCHHHHHHHHcCCeEEEEeCCHH
Confidence 556667766654 2343 8999999999988877765 7889988663
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=87.96 E-value=0.33 Score=45.64 Aligned_cols=55 Identities=20% Similarity=0.176 Sum_probs=36.0
Q ss_pred EEEeccc-c-CC-CCCCccceEEeccccccc-------------------ccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 255 IGVLGTI-K-LP-YPSRAFDMAHCSRCLIPW-------------------SANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 255 ~~~~~~~-~-lp-~~d~sFDlV~~~~~l~~~-------------------~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
.++.++. . +. +++++||+|+++--.... ......++.++.|+|||||.+++....
T Consensus 23 ~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 23 RLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp EEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 4455554 2 32 567899999998433211 001135778999999999999997643
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=87.95 E-value=0.9 Score=41.67 Aligned_cols=42 Identities=10% Similarity=0.034 Sum_probs=28.2
Q ss_pred CCCccceEEeccccc-------------ccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 266 PSRAFDMAHCSRCLI-------------PWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~-------------~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++++||+|++.--.. .|.......|.++.|+|+|||.+++..
T Consensus 20 ~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 20 ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 356788888763210 000122568889999999999999864
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.88 E-value=0.78 Score=44.35 Aligned_cols=92 Identities=17% Similarity=0.220 Sum_probs=55.8
Q ss_pred CCCCCCcceEEEECCcC-chHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc--CCCCCCccceE
Q 036725 200 PMDSGMVRTALDTGCGV-ASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK--LPYPSRAFDMA 273 (392)
Q Consensus 200 ~~~~~~~~~VLDiGCG~-G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~--lp~~d~sFDlV 273 (392)
....++ +||-+|+|. |.++..+++. +|++++.++. ..+.+++.|...++ ...... .... +.+|+|
T Consensus 191 ~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~-----~~~~a~~lGa~~vi-~~~~~~~~~~~~-~g~Dvv 261 (369)
T 1uuf_A 191 QAGPGK--KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA-----KREAAKALGADEVV-NSRNADEMAAHL-KSFDFI 261 (369)
T ss_dssp TCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG-----GHHHHHHHTCSEEE-ETTCHHHHHTTT-TCEEEE
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHHcCCcEEe-ccccHHHHHHhh-cCCCEE
Confidence 434444 899999874 7777777764 5777766543 34466666754332 111111 0111 579999
Q ss_pred EecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 274 HCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 274 ~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+..-.. . ..+.+..+.|+++|.++..+
T Consensus 262 id~~g~-~------~~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 262 LNTVAA-P------HNLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp EECCSS-C------CCHHHHHTTEEEEEEEEECC
T ss_pred EECCCC-H------HHHHHHHHHhccCCEEEEec
Confidence 865321 1 13677889999999999865
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=86.81 E-value=1.6 Score=42.40 Aligned_cols=102 Identities=14% Similarity=0.063 Sum_probs=60.7
Q ss_pred hCCCCCCCcceEEEECCcC-chHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC-C------C
Q 036725 198 VIPMDSGMVRTALDTGCGV-ASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL-P------Y 265 (392)
Q Consensus 198 ~l~~~~~~~~~VLDiGCG~-G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l-p------~ 265 (392)
......++ +||-+|+|. |.++..+++. .|++++.+ +...+.+++.|.. .+....... . .
T Consensus 180 ~~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~-----~~~~~~a~~lGa~--~i~~~~~~~~~~~~~~~~ 250 (398)
T 2dph_A 180 SAGVKPGS--HVYIAGAGPVGRCAAAGARLLGAACVIVGDQN-----PERLKLLSDAGFE--TIDLRNSAPLRDQIDQIL 250 (398)
T ss_dssp HTTCCTTC--EEEEECCSHHHHHHHHHHHHHTCSEEEEEESC-----HHHHHHHHTTTCE--EEETTSSSCHHHHHHHHH
T ss_pred HcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC-----HHHHHHHHHcCCc--EEcCCCcchHHHHHHHHh
Confidence 34444554 899999875 7788777764 56777553 3456677777752 222111111 0 0
Q ss_pred CCCccceEEeccccccc-------ccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 266 PSRAFDMAHCSRCLIPW-------SANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~-------~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
....||+|+-.-..... ..+....+.+..++|++||.+++.+.
T Consensus 251 ~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~ 300 (398)
T 2dph_A 251 GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGI 300 (398)
T ss_dssp SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSC
T ss_pred CCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecc
Confidence 12369999865322100 00123468899999999999988653
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=86.23 E-value=0.72 Score=43.81 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=59.3
Q ss_pred hCCCCCCCcceEEEECCcC-chHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC--C--CCCc
Q 036725 198 VIPMDSGMVRTALDTGCGV-ASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP--Y--PSRA 269 (392)
Q Consensus 198 ~l~~~~~~~~~VLDiGCG~-G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp--~--~d~s 269 (392)
......++ +||-+|+|. |.++..+++. +|++++. ++...+.+++.|...++ ......+. . ..+.
T Consensus 161 ~~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~-----~~~~~~~~~~lGa~~~i-~~~~~~~~~~~~~~~g~ 232 (340)
T 3s2e_A 161 VTDTRPGQ--WVVISGIGGLGHVAVQYARAMGLRVAAVDI-----DDAKLNLARRLGAEVAV-NARDTDPAAWLQKEIGG 232 (340)
T ss_dssp TTTCCTTS--EEEEECCSTTHHHHHHHHHHTTCEEEEEES-----CHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHHSS
T ss_pred HcCCCCCC--EEEEECCCHHHHHHHHHHHHCCCeEEEEeC-----CHHHHHHHHHcCCCEEE-eCCCcCHHHHHHHhCCC
Confidence 33434444 888899874 8888888775 5666654 33466677887754432 11111100 0 1136
Q ss_pred cceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 270 FDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 270 FDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+|+|+-... ....+.+..+.|++||.+++.+.
T Consensus 233 ~d~vid~~g-------~~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 233 AHGVLVTAV-------SPKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp EEEEEESSC-------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred CCEEEEeCC-------CHHHHHHHHHHhccCCEEEEeCC
Confidence 888875321 23568899999999999999753
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=86.06 E-value=0.93 Score=39.21 Aligned_cols=87 Identities=21% Similarity=0.235 Sum_probs=51.8
Q ss_pred ceEEEECC--cCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc----C--CCCCCccceEEe
Q 036725 207 RTALDTGC--GVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK----L--PYPSRAFDMAHC 275 (392)
Q Consensus 207 ~~VLDiGC--G~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~----l--p~~d~sFDlV~~ 275 (392)
++||.+|+ |.|..+..++.. +|++++.+ +...+.+++.|.... ....+.. + -...+.+|+|+.
T Consensus 40 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~-----~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~~~~~~D~vi~ 113 (198)
T 1pqw_A 40 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGS-----DAKREMLSRLGVEYV-GDSRSVDFADEILELTDGYGVDVVLN 113 (198)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESS-----HHHHHHHHTTCCSEE-EETTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred CEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCC-----HHHHHHHHHcCCCEE-eeCCcHHHHHHHHHHhCCCCCeEEEE
Confidence 48999994 556666666553 56676653 233445555554322 2211110 0 011246999986
Q ss_pred cccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 276 SRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 276 ~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+.. ...+.+..+.|+|||.+++.+
T Consensus 114 ~~g--------~~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 114 SLA--------GEAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp CCC--------THHHHHHHHTEEEEEEEEECS
T ss_pred CCc--------hHHHHHHHHHhccCCEEEEEc
Confidence 531 145788999999999999865
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=85.99 E-value=0.62 Score=44.67 Aligned_cols=93 Identities=18% Similarity=0.153 Sum_probs=57.8
Q ss_pred CCCCCCcceEEEECCcC-chHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEec---cc----cC-CCC
Q 036725 200 PMDSGMVRTALDTGCGV-ASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLG---TI----KL-PYP 266 (392)
Q Consensus 200 ~~~~~~~~~VLDiGCG~-G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~---~~----~l-p~~ 266 (392)
....+. +||-+|+|. |.++..+++. .|++++.+ +...+.+++.|...++ ... .. .+ ...
T Consensus 168 ~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~-----~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~i~~~~ 239 (356)
T 1pl8_A 168 GVTLGH--KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS-----ATRLSKAKEIGADLVL-QISKESPQEIARKVEGQL 239 (356)
T ss_dssp TCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEEESC-----HHHHHHHHHTTCSEEE-ECSSCCHHHHHHHHHHHH
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEECCC-----HHHHHHHHHhCCCEEE-cCcccccchHHHHHHHHh
Confidence 334454 899999874 7777777764 46666543 3456677777865432 221 01 00 000
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+.+|+|+-.-. ....+.+..++|++||.+++.+
T Consensus 240 ~~g~D~vid~~g-------~~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 240 GCKPEVTIECTG-------AEASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp TSCCSEEEECSC-------CHHHHHHHHHHSCTTCEEEECS
T ss_pred CCCCCEEEECCC-------ChHHHHHHHHHhcCCCEEEEEe
Confidence 146999985421 1245788899999999999875
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=85.28 E-value=4.7 Score=38.48 Aligned_cols=99 Identities=12% Similarity=0.120 Sum_probs=57.1
Q ss_pred ceEEEECCcCchHHHHHhh--CCcEEEeCCccChHHHHHHHHHHcC---------------------CCcEEEEeccc-c
Q 036725 207 RTALDTGCGVASWGAYLFK--KNVITMSFAPRDSHEAQVQFALERG---------------------VPAVIGVLGTI-K 262 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~--~~v~~vd~s~~d~~~a~~~~a~~rg---------------------~~~~~~~~~~~-~ 262 (392)
+.|+.+|||..+....|.. .++..++++-.++-+...+...+.+ .+....+..+. +
T Consensus 99 ~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL~d 178 (334)
T 1rjd_A 99 VQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLND 178 (334)
T ss_dssp EEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTTC
T ss_pred cEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCCCC
Confidence 5899999999999999886 3566666632233333333333321 13445554443 2
Q ss_pred CC--------C-CCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEE
Q 036725 263 LP--------Y-PSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 263 lp--------~-~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~ 306 (392)
.. . ..+...++++-.++..+.++. ..+++.+.+.+ |+|.+++.
T Consensus 179 ~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~ 231 (334)
T 1rjd_A 179 ITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISY 231 (334)
T ss_dssp HHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEE
T ss_pred cHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEE
Confidence 11 1 224456777665664444333 57777777776 78877653
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.12 E-value=7 Score=37.79 Aligned_cols=91 Identities=9% Similarity=-0.053 Sum_probs=59.3
Q ss_pred eEEEECCcCchHHHHHhhCCcEEEeCCccChHHHHHHHHHHcCCCc--EEEEeccccCCCCCCccceEEecccccccccC
Q 036725 208 TALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPA--VIGVLGTIKLPYPSRAFDMAHCSRCLIPWSAN 285 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~~v~~vd~s~~d~~~a~~~~a~~rg~~~--~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d 285 (392)
+||.|+.+.|.++..|+...++.+.=+- ....+..+.....+++. +.+...... ....||+|+.. +++.
T Consensus 41 ~~~~~~d~~gal~~~~~~~~~~~~~ds~-~~~~~~~~n~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~-----lpk~ 111 (375)
T 4dcm_A 41 PVLILNDAFGALSCALAEHKPYSIGDSY-ISELATRENLRLNGIDESSVKFLDSTAD---YPQQPGVVLIK-----VPKT 111 (375)
T ss_dssp CEEEECCSSSHHHHHTGGGCCEEEESCH-HHHHHHHHHHHHTTCCGGGSEEEETTSC---CCSSCSEEEEE-----CCSC
T ss_pred CEEEECCCCCHHHHhhccCCceEEEhHH-HHHHHHHHHHHHcCCCccceEecccccc---cccCCCEEEEE-----cCCC
Confidence 7999999999999999877777774221 23334444445566643 222222222 24579999763 3323
Q ss_pred ---hHHHHHHHHHhccCCeEEEEEc
Q 036725 286 ---DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 286 ---~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....|.++...|+||+.+++.+
T Consensus 112 ~~~l~~~L~~l~~~l~~~~~i~~~g 136 (375)
T 4dcm_A 112 LALLEQQLRALRKVVTSDTRIIAGA 136 (375)
T ss_dssp HHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEEe
Confidence 3567888888999999998865
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=84.82 E-value=1.4 Score=42.04 Aligned_cols=96 Identities=13% Similarity=0.095 Sum_probs=59.8
Q ss_pred hhCCCCCCCcceEEEECCcC-chHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC------CC
Q 036725 197 SVIPMDSGMVRTALDTGCGV-ASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL------PY 265 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiGCG~-G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l------p~ 265 (392)
+......+. +||=+|+|. |.++..+++. .|+++|. ++...+.+++.|...++ ...+.++ -.
T Consensus 160 ~~~~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~-----~~~~~~~~~~lGa~~vi-~~~~~~~~~~v~~~t 231 (352)
T 3fpc_A 160 ELANIKLGD--TVCVIGIGPVGLMSVAGANHLGAGRIFAVGS-----RKHCCDIALEYGATDII-NYKNGDIVEQILKAT 231 (352)
T ss_dssp HHTTCCTTC--CEEEECCSHHHHHHHHHHHTTTCSSEEEECC-----CHHHHHHHHHHTCCEEE-CGGGSCHHHHHHHHT
T ss_pred HhcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCcEEEEECC-----CHHHHHHHHHhCCceEE-cCCCcCHHHHHHHHc
Confidence 444444554 788899874 7777777775 5777744 34456778888864332 1111110 01
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+|+|+-.... ...+.+..+.|+|||.+++.+
T Consensus 232 ~g~g~D~v~d~~g~-------~~~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 232 DGKGVDKVVIAGGD-------VHTFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp TTCCEEEEEECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred CCCCCCEEEECCCC-------hHHHHHHHHHHhcCCEEEEec
Confidence 23469999864211 135788999999999999865
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=84.75 E-value=2.1 Score=44.83 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=27.2
Q ss_pred CCccceEEecccccccccCh--HHHHHHHHHhccCCeEEEE
Q 036725 267 SRAFDMAHCSRCLIPWSAND--GMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~--~~~L~ei~RvLkPGG~lvl 305 (392)
+..||+++.....-...++. ..++.++.++++|||.+.-
T Consensus 169 ~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 169 NNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp TTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred CCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 46899998753221111222 6899999999999999875
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=84.72 E-value=0.87 Score=43.32 Aligned_cols=44 Identities=14% Similarity=0.244 Sum_probs=32.1
Q ss_pred CCCCccceEEecccccc-------------cccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 265 YPSRAFDMAHCSRCLIP-------------WSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~-------------~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+++++||+|++.--... |.......|.++.|+|||||.+++...
T Consensus 29 l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~ 85 (323)
T 1boo_A 29 FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG 85 (323)
T ss_dssp SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence 56889999998742210 111246789999999999999999754
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=83.78 E-value=1.8 Score=41.56 Aligned_cols=94 Identities=18% Similarity=0.102 Sum_probs=57.8
Q ss_pred hCCCCCCCcceEEEECCcC-chHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC------CCC
Q 036725 198 VIPMDSGMVRTALDTGCGV-ASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP------YPS 267 (392)
Q Consensus 198 ~l~~~~~~~~~VLDiGCG~-G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp------~~d 267 (392)
......+. +||=+|+|. |.++..+++. +|++++.+ +...+.+++.|...++- .....+. ...
T Consensus 184 ~~~~~~g~--~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~-----~~~~~~~~~lGa~~vi~-~~~~~~~~~v~~~~~g 255 (363)
T 3uog_A 184 KGHLRAGD--RVVVQGTGGVALFGLQIAKATGAEVIVTSSS-----REKLDRAFALGADHGIN-RLEEDWVERVYALTGD 255 (363)
T ss_dssp TTCCCTTC--EEEEESSBHHHHHHHHHHHHTTCEEEEEESC-----HHHHHHHHHHTCSEEEE-TTTSCHHHHHHHHHTT
T ss_pred hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCEEEEEecC-----chhHHHHHHcCCCEEEc-CCcccHHHHHHHHhCC
Confidence 33444444 899999774 6677777664 56666543 34566777777644432 1111110 123
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..+|+|+-... . ..+.+..+.|++||.+++.+
T Consensus 256 ~g~D~vid~~g--~------~~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 256 RGADHILEIAG--G------AGLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp CCEEEEEEETT--S------SCHHHHHHHEEEEEEEEEEC
T ss_pred CCceEEEECCC--h------HHHHHHHHHhhcCCEEEEEe
Confidence 47999986432 1 23678889999999999875
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.69 E-value=2 Score=40.86 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=57.0
Q ss_pred CCCCCCcceEEEECCcC-chHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC------CC---
Q 036725 200 PMDSGMVRTALDTGCGV-ASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP------YP--- 266 (392)
Q Consensus 200 ~~~~~~~~~VLDiGCG~-G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp------~~--- 266 (392)
....+. +||-+|+|. |.++..+++. +|++++. ++...+.+++.|...++...+...+. ..
T Consensus 165 ~~~~g~--~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~-----~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~ 237 (352)
T 1e3j_A 165 GVQLGT--TVLVIGAGPIGLVSVLAAKAYGAFVVCTAR-----SPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAI 237 (352)
T ss_dssp TCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEEES-----CHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred CCCCCC--EEEEECCCHHHHHHHHHHHHcCCEEEEEcC-----CHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhcccc
Confidence 333444 899999863 6777777764 4666654 33456677777765432211101110 11
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+.+|+|+..-. ....+.+..++|++||.+++.+
T Consensus 238 g~g~D~vid~~g-------~~~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 238 GDLPNVTIDCSG-------NEKCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp SSCCSEEEECSC-------CHHHHHHHHHHSCTTCEEEECS
T ss_pred CCCCCEEEECCC-------CHHHHHHHHHHHhcCCEEEEEe
Confidence 246999986421 1235788899999999999865
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=83.42 E-value=1.9 Score=40.77 Aligned_cols=95 Identities=22% Similarity=0.173 Sum_probs=56.7
Q ss_pred hhCCCCCCCcceEEEECCc--CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC------CC
Q 036725 197 SVIPMDSGMVRTALDTGCG--VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL------PY 265 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiGCG--~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l------p~ 265 (392)
+......+. +||-+|+| .|..+..+++. +|++++.++. ..+.+++.|...++ ......+ -.
T Consensus 138 ~~~~~~~g~--~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~-----~~~~~~~lga~~~~-~~~~~~~~~~~~~~~ 209 (340)
T 3gms_A 138 ETLNLQRND--VLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNK-----HTEELLRLGAAYVI-DTSTAPLYETVMELT 209 (340)
T ss_dssp TTSCCCTTC--EEEESSTTSHHHHHHHHHHHHHTCEEEEEESSST-----THHHHHHHTCSEEE-ETTTSCHHHHHHHHT
T ss_pred HhcccCCCC--EEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHH-----HHHHHHhCCCcEEE-eCCcccHHHHHHHHh
Confidence 444444454 89999987 57777777764 6777776553 33455666654332 1111111 01
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+|+|+..... ..+.+..+.|++||.+++.+
T Consensus 210 ~~~g~Dvvid~~g~--------~~~~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 210 NGIGADAAIDSIGG--------PDGNELAFSLRPNGHFLTIG 243 (340)
T ss_dssp TTSCEEEEEESSCH--------HHHHHHHHTEEEEEEEEECC
T ss_pred CCCCCcEEEECCCC--------hhHHHHHHHhcCCCEEEEEe
Confidence 23479999864221 12344558999999999975
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=83.35 E-value=1.3 Score=42.66 Aligned_cols=96 Identities=19% Similarity=0.201 Sum_probs=58.8
Q ss_pred hCCCCCCCcceEEEECCcC-chHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEec-cc-----c-CCC
Q 036725 198 VIPMDSGMVRTALDTGCGV-ASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLG-TI-----K-LPY 265 (392)
Q Consensus 198 ~l~~~~~~~~~VLDiGCG~-G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~-~~-----~-lp~ 265 (392)
......+. +||=+|+|. |.++..+++. .|++++. ++...+.+++.|...++.... +. . ...
T Consensus 177 ~~~~~~g~--~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~-----~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~ 249 (370)
T 4ej6_A 177 LSGIKAGS--TVAILGGGVIGLLTVQLARLAGATTVILSTR-----QATKRRLAEEVGATATVDPSAGDVVEAIAGPVGL 249 (370)
T ss_dssp HHTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEECS-----CHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSS
T ss_pred hcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCEEEEECC-----CHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhc
Confidence 33444554 888899864 6777777764 4556644 344666788888654321111 00 0 002
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..+.+|+|+-.- -....+.+..+.|++||.+++.+
T Consensus 250 ~~gg~Dvvid~~-------G~~~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 250 VPGGVDVVIECA-------GVAETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp STTCEEEEEECS-------CCHHHHHHHHHHEEEEEEEEECS
T ss_pred cCCCCCEEEECC-------CCHHHHHHHHHHhccCCEEEEEe
Confidence 234799998542 12356889999999999999975
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.75 E-value=3.9 Score=39.59 Aligned_cols=100 Identities=17% Similarity=0.124 Sum_probs=60.2
Q ss_pred CCCCCCCcceEEEECCcC-chHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc-----C-C-CC
Q 036725 199 IPMDSGMVRTALDTGCGV-ASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-----L-P-YP 266 (392)
Q Consensus 199 l~~~~~~~~~VLDiGCG~-G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~-----l-p-~~ 266 (392)
.....+. +||-+|+|. |.++..+++. .|+++|. ++...+.+++.|.. . +...... + . ..
T Consensus 181 ~~~~~g~--~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~-----~~~~~~~a~~lGa~-~-i~~~~~~~~~~~v~~~t~ 251 (398)
T 1kol_A 181 AGVGPGS--TVYVAGAGPVGLAAAASARLLGAAVVIVGDL-----NPARLAHAKAQGFE-I-ADLSLDTPLHEQIAALLG 251 (398)
T ss_dssp TTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEEES-----CHHHHHHHHHTTCE-E-EETTSSSCHHHHHHHHHS
T ss_pred cCCCCCC--EEEEECCcHHHHHHHHHHHHCCCCeEEEEcC-----CHHHHHHHHHcCCc-E-EccCCcchHHHHHHHHhC
Confidence 3444444 899999864 7778777764 3666654 34466778887763 2 2211111 0 0 11
Q ss_pred CCccceEEecccccc--------cccChHHHHHHHHHhccCCeEEEEEc
Q 036725 267 SRAFDMAHCSRCLIP--------WSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 267 d~sFDlV~~~~~l~~--------~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
...+|+|+-.-.... -..++...+.+..++|++||.+++.+
T Consensus 252 g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 252 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred CCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 246999986532210 00123457889999999999998865
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=82.08 E-value=2 Score=41.05 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=55.9
Q ss_pred CCCCCCCcceEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc--c--cCCCCCCcc
Q 036725 199 IPMDSGMVRTALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT--I--KLPYPSRAF 270 (392)
Q Consensus 199 l~~~~~~~~~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~--~--~lp~~d~sF 270 (392)
.....+. +||-+|+| .|.++..+++. +|++++.++. ..+.+++.|...++-.... . .+. +.+
T Consensus 175 ~~~~~g~--~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~-----~~~~~~~lGa~~v~~~~~~~~~~~~~~---~~~ 244 (360)
T 1piw_A 175 NGCGPGK--KVGIVGLGGIGSMGTLISKAMGAETYVISRSSR-----KREDAMKMGADHYIATLEEGDWGEKYF---DTF 244 (360)
T ss_dssp TTCSTTC--EEEEECCSHHHHHHHHHHHHHTCEEEEEESSST-----THHHHHHHTCSEEEEGGGTSCHHHHSC---SCE
T ss_pred cCCCCCC--EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-----HHHHHHHcCCCEEEcCcCchHHHHHhh---cCC
Confidence 3434444 89999985 36777777764 6777776553 3445666665433211111 1 121 479
Q ss_pred ceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 271 DMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 271 DlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
|+|+..-... ....+.+..++|++||.++..+
T Consensus 245 D~vid~~g~~-----~~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 245 DLIVVCASSL-----TDIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp EEEEECCSCS-----TTCCTTTGGGGEEEEEEEEECC
T ss_pred CEEEECCCCC-----cHHHHHHHHHHhcCCCEEEEec
Confidence 9998653210 0112466788999999999865
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=81.98 E-value=3.5 Score=39.62 Aligned_cols=97 Identities=16% Similarity=0.117 Sum_probs=59.6
Q ss_pred hhCCCCCCCcceEEEECCc-CchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEec-cccC-----CC
Q 036725 197 SVIPMDSGMVRTALDTGCG-VASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLG-TIKL-----PY 265 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiGCG-~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~-~~~l-----p~ 265 (392)
+......+. +||=+|+| .|.++..+++. .|+++|.++ ...+.+++.|...++.... ...+ ..
T Consensus 187 ~~~~~~~g~--~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~-----~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~ 259 (378)
T 3uko_A 187 NTAKVEPGS--NVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDS-----KKYETAKKFGVNEFVNPKDHDKPIQEVIVDL 259 (378)
T ss_dssp TTTCCCTTC--CEEEECCSHHHHHHHHHHHHHTCSCEEEECSCT-----THHHHHHTTTCCEEECGGGCSSCHHHHHHHH
T ss_pred hhcCCCCCC--EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCH-----HHHHHHHHcCCcEEEccccCchhHHHHHHHh
Confidence 444444454 78889986 47777777764 578886554 3556777777644321110 0000 01
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCC-eEEEEEc
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPG-GYWVLSG 307 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPG-G~lvl~~ 307 (392)
..+.+|+|+-.-. ....+.+..+.|++| |.+++.+
T Consensus 260 ~~gg~D~vid~~g-------~~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 260 TDGGVDYSFECIG-------NVSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp TTSCBSEEEECSC-------CHHHHHHHHHTBCTTTCEEEECS
T ss_pred cCCCCCEEEECCC-------CHHHHHHHHHHhhccCCEEEEEc
Confidence 1337999985421 234678899999997 9999865
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=81.52 E-value=2.9 Score=39.14 Aligned_cols=86 Identities=17% Similarity=0.176 Sum_probs=56.2
Q ss_pred eEEEECC--cCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC--CCCCCccceEEeccccc
Q 036725 208 TALDTGC--GVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL--PYPSRAFDMAHCSRCLI 280 (392)
Q Consensus 208 ~VLDiGC--G~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l--p~~d~sFDlV~~~~~l~ 280 (392)
+||=+|+ |.|.++..+++. +|++++.++. ..+.+++.|...++ ...+... ....+.+|+|+-.-.
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~-----~~~~~~~lGa~~vi-~~~~~~~~~~~~~~~~d~v~d~~g-- 220 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRES-----THGYLKSLGANRIL-SRDEFAESRPLEKQLWAGAIDTVG-- 220 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGG-----GHHHHHHHTCSEEE-EGGGSSCCCSSCCCCEEEEEESSC--
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHH-----HHHHHHhcCCCEEE-ecCCHHHHHhhcCCCccEEEECCC--
Confidence 3888886 567888888775 7888876543 45566677754432 2221111 122457999875321
Q ss_pred ccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 281 PWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 281 ~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
...+.+..+.|+++|.++..+
T Consensus 221 ------~~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 221 ------DKVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp ------HHHHHHHHHTEEEEEEEEECC
T ss_pred ------cHHHHHHHHHHhcCCEEEEEe
Confidence 237899999999999999875
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=81.37 E-value=1.9 Score=40.65 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=55.7
Q ss_pred hhCCCCCCCcceEEEECC--cCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc-ccC-----CC
Q 036725 197 SVIPMDSGMVRTALDTGC--GVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT-IKL-----PY 265 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiGC--G~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~-~~l-----p~ 265 (392)
+......+ ++||-+|+ |.|..+..++.. +|++++.+ +...+.+++.|.... +...+ ..+ ..
T Consensus 139 ~~~~~~~g--~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~-----~~~~~~~~~~g~~~~-~d~~~~~~~~~~~~~~ 210 (333)
T 1v3u_A 139 EVCGVKGG--ETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGS-----DEKIAYLKQIGFDAA-FNYKTVNSLEEALKKA 210 (333)
T ss_dssp TTSCCCSS--CEEEEESTTBHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHTTCSEE-EETTSCSCHHHHHHHH
T ss_pred HhhCCCCC--CEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHhcCCcEE-EecCCHHHHHHHHHHH
Confidence 33343344 48999997 566777666653 56666553 234445555564322 22111 100 00
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..+.+|+|+.+.. ...+.+..+.|++||.+++.+
T Consensus 211 ~~~~~d~vi~~~g--------~~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 211 SPDGYDCYFDNVG--------GEFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp CTTCEEEEEESSC--------HHHHHHHHTTEEEEEEEEECC
T ss_pred hCCCCeEEEECCC--------hHHHHHHHHHHhcCCEEEEEe
Confidence 1246999986532 134788899999999999865
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=80.60 E-value=1.5 Score=41.33 Aligned_cols=95 Identities=18% Similarity=0.148 Sum_probs=57.6
Q ss_pred hhCCCCCCCcceEEEECC--cCchHHHHHhhC---CcEEEeCCccChHHHHHHHH-HHcCCCcEEEEeccccC-----CC
Q 036725 197 SVIPMDSGMVRTALDTGC--GVASWGAYLFKK---NVITMSFAPRDSHEAQVQFA-LERGVPAVIGVLGTIKL-----PY 265 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiGC--G~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a-~~rg~~~~~~~~~~~~l-----p~ 265 (392)
+......++ +||-+|+ |.|..+..+++. +|++++.+ +...+.+ ++.|...++ ...+..+ ..
T Consensus 143 ~~~~~~~g~--~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~-----~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~ 214 (336)
T 4b7c_A 143 DVGQPKNGE--TVVISGAAGAVGSVAGQIARLKGCRVVGIAGG-----AEKCRFLVEELGFDGAI-DYKNEDLAAGLKRE 214 (336)
T ss_dssp HTTCCCTTC--EEEESSTTSHHHHHHHHHHHHTTCEEEEEESS-----HHHHHHHHHTTCCSEEE-ETTTSCHHHHHHHH
T ss_pred HhcCCCCCC--EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCC-----HHHHHHHHHHcCCCEEE-ECCCHHHHHHHHHh
Confidence 444444554 8999998 467777777664 56666543 3345555 566653322 2111110 00
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..+.+|+|+.+.. ...+.+..+.|++||.+++.+
T Consensus 215 ~~~~~d~vi~~~g--------~~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 215 CPKGIDVFFDNVG--------GEILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp CTTCEEEEEESSC--------HHHHHHHHTTEEEEEEEEECC
T ss_pred cCCCceEEEECCC--------cchHHHHHHHHhhCCEEEEEe
Confidence 1346999986422 136888999999999999864
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=80.53 E-value=2.5 Score=40.69 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=49.8
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP 264 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp 264 (392)
+++.+++.+...++. .++|..+|.|..+..|+++ .|+++|.++..+ +.++......+.++.++. .+.
T Consensus 45 Ll~Evl~~L~i~pgg--iyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al-----~~A~rL~~~Rv~lv~~nF~~l~ 117 (347)
T 3tka_A 45 LLDEAVNGLNIRPDG--IYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAI-----AVAKTIDDPRFSIIHGPFSALG 117 (347)
T ss_dssp TTHHHHHHTCCCTTC--EEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHH-----HHHTTCCCTTEEEEESCGGGHH
T ss_pred cHHHHHHhhCCCCCC--EEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHH-----HHHHhhcCCcEEEEeCCHHHHH
Confidence 446666777655554 8999999999999999876 589998866433 333211224555666654 221
Q ss_pred --CC----CCccceEEec
Q 036725 265 --YP----SRAFDMAHCS 276 (392)
Q Consensus 265 --~~----d~sFDlV~~~ 276 (392)
.+ .+++|.|+..
T Consensus 118 ~~L~~~g~~~~vDgILfD 135 (347)
T 3tka_A 118 EYVAERDLIGKIDGILLD 135 (347)
T ss_dssp HHHHHTTCTTCEEEEEEE
T ss_pred HHHHhcCCCCcccEEEEC
Confidence 00 1357877754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 392 | ||||
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 1e-07 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 1e-06 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 1e-05 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 1e-04 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 0.002 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 0.002 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 0.003 | |
| d2nxca1 | 254 | c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT | 0.003 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 0.003 |
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 50.1 bits (119), Expect = 1e-07
Identities = 25/177 (14%), Positives = 53/177 (29%), Gaps = 23/177 (12%)
Query: 181 GTQFPHGAD-AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFA 234
TQ D +YI + P L+ G G + +Y+ + +
Sbjct: 65 NTQIISEIDASYIIMRCGLRPGM-----DILEVGVGSGNMSSYILYALNGKGTLTVVERD 119
Query: 235 PRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEID 294
+ +A + + V I + + A + PW ++ +I
Sbjct: 120 EDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMY-DAVIADIPDPW-----NHVQKIA 173
Query: 295 RVLRPGGYWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKHEKGET 351
+++PG P + ++ + L E +L+ +G T
Sbjct: 174 SMMKPGSVATFYLPNFDQ------SEKTVLSLSASGMHHLETVELMKRRILVREGAT 224
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 47.0 bits (111), Expect = 1e-06
Identities = 29/159 (18%), Positives = 50/159 (31%), Gaps = 9/159 (5%)
Query: 184 FPHGADAYIEELASVIPMDSGMVR--TALDTGCGVASWGAYLFKKNVITMSFAPRDSHEA 241
+ +S I M + +DTG G + A L + + + E
Sbjct: 80 MKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREE 139
Query: 242 QVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGG 301
+ A + TIK+ S FD + Y+ + L+ GG
Sbjct: 140 FAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDPWN-YIDKCWEALKGGG 198
Query: 302 YWVLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLL 340
+ P N Q +K+L+E E+ + L
Sbjct: 199 RFATVCPTTNQ------VQETLKKLQELPFIRIEVWESL 231
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 44.0 bits (103), Expect = 1e-05
Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 13/165 (7%)
Query: 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQF 245
A I + V+P+ L G + +++ V + +APR E
Sbjct: 61 AAIIKGLKVMPIKRDS--KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELL--- 115
Query: 246 ALERGVPAVIGVLGTIKLPYPSR-AFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWV 304
+I +LG P + + + + L+ GGY +
Sbjct: 116 DACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGM 175
Query: 305 LSGPLINWRTN---YQAWQRPIKELEEEQRKIEEIAKLLCWEKKH 346
++ + + ++ + LE KI + + +EK H
Sbjct: 176 IAIKARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIEPFEKDH 220
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 40.9 bits (94), Expect = 1e-04
Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 4/129 (3%)
Query: 207 RTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYP 266
R LD CG L ++ + + + + + + G +
Sbjct: 43 RRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF 102
Query: 267 SRAFDMAHCSRCLIP--WSANDGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAWQRPIK 324
FD I + ++ L+PGG ++ P W +
Sbjct: 103 KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP--CWFYGGRDGPVVWN 160
Query: 325 ELEEEQRKI 333
E + E++ +
Sbjct: 161 EQKGEEKLV 169
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 37.2 bits (85), Expect = 0.002
Identities = 27/163 (16%), Positives = 56/163 (34%), Gaps = 14/163 (8%)
Query: 184 FPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQV 243
+ DA + +L + + V LD GCG + + F + ++ D + +
Sbjct: 66 YQPLRDAIVAQLRERLDDKATAV---LDIGCGEGYY-THAFADALPEITTFGLDVSKVAI 121
Query: 244 QFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYW 303
+ A +R V + +LP+ + D E+ RV++PGG+
Sbjct: 122 KAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP--------CKAEELARVVKPGGWV 173
Query: 304 VLSGPLINWRTNYQAWQRPIKELEEEQRKIEEIAKLLCWEKKH 346
+ + P R + E+ E++ +
Sbjct: 174 ITATP--GPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAE 214
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 37.2 bits (85), Expect = 0.002
Identities = 21/137 (15%), Positives = 38/137 (27%), Gaps = 10/137 (7%)
Query: 210 LDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRA 269
+D GCG G L + DS E + A E
Sbjct: 32 VDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL 91
Query: 270 FDMAHC--SRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINWRTNYQAW------QR 321
D + + ++ ++ GG + P +W +N ++ Q
Sbjct: 92 NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP--HWISNMASYLLDGEKQS 149
Query: 322 PIKELEEEQRKIEEIAK 338
+L Q+ E +
Sbjct: 150 EFIQLGVLQKLFESDTQ 166
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 36.9 bits (84), Expect = 0.003
Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 8/129 (6%)
Query: 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQF 245
+ L V+ M G LD G G + + + + +A+ +
Sbjct: 19 EEKYATLGRVLRMKPGT--RILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRA 76
Query: 246 ALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVL 305
V + + D+A C + + + L+PGG ++
Sbjct: 77 EELGVSERVHFIHNDAAGYVANEKCDVAACVGATW-IAGGFAGAEELLAQSLKPGGIMLI 135
Query: 306 SGPLINWRT 314
P WR
Sbjct: 136 GEP--YWRQ 142
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Score = 36.8 bits (84), Expect = 0.003
Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 8/107 (7%)
Query: 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP 264
LD G G K + + P +A+ A GV + G+++
Sbjct: 122 DKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAE-ANAKRNGVR-PRFLEGSLEAA 179
Query: 265 YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLIN 311
P FD+ + +A L PGG +L+G L +
Sbjct: 180 LPFGPFDLLVANLYAELHAA----LAPRYREALVPGGRALLTGILKD 222
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 36.5 bits (83), Expect = 0.003
Identities = 20/137 (14%), Positives = 35/137 (25%), Gaps = 7/137 (5%)
Query: 210 LDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPS 267
LD G G I + A + LP+P
Sbjct: 21 LDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD 80
Query: 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINW----RTNYQAWQRPI 323
+FD+ C ++ + E+ RVL+ G ++L R
Sbjct: 81 DSFDIITCRYAAH-HFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLR 139
Query: 324 KELEEEQRKIEEIAKLL 340
+ + E +
Sbjct: 140 DPSHVRESSLSEWQAMF 156
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 392 | |||
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.76 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.75 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.73 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.68 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.65 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.63 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.62 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.54 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.54 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.54 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.54 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.52 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.52 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.51 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.5 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.48 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.48 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.48 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.47 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.47 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.46 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.45 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.42 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.4 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.37 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.35 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.35 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.35 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.34 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.33 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.32 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.31 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.31 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.3 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.3 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.26 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.22 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.21 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.18 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.16 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.16 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.15 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.15 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.12 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.12 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.09 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.07 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.03 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.01 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.0 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.89 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.88 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.76 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.73 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.66 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.65 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.62 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.6 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.59 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.53 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.48 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.4 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.39 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.35 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.34 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.21 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.2 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.18 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.18 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.15 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.15 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.14 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.1 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.1 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.0 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.84 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.81 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.81 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.78 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 97.77 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.76 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.73 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.71 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.68 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.67 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.64 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.62 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.6 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.59 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.48 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.45 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.38 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.36 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 97.29 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.72 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.68 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 96.67 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.3 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.25 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.2 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 95.45 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 94.89 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.31 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.07 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.19 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 92.8 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 92.17 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 91.99 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 90.62 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 90.5 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 90.45 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 90.2 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 89.81 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 89.41 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 87.86 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 86.3 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 86.21 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 85.73 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 84.47 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 83.82 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 82.94 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 81.58 |
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=1.8e-18 Score=161.84 Aligned_cols=160 Identities=20% Similarity=0.341 Sum_probs=114.7
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCCCCCCCcccccCCCCCchhhhhhhccceeccCCeEEecCCCCCCCccHHHHHHHHH
Q 036725 117 HCPPPDEKLHCLIPAPKGYATPFRWPKSRDYVPYANAPYKSLTVEKAVQNWIQYEGNVFRFPGGGTQFPHGADAYIEELA 196 (392)
Q Consensus 117 ~C~~~~~~~~c~~~~p~gY~~Pl~wp~s~~~~wy~~~p~~~l~~~k~~q~w~~~~~~~~~fp~~g~~f~~~~~~~i~~l~ 196 (392)
.|+. .|+++.+++||.+.++-+..+ +..+.+...+..+++.|+. .| .+....+..+..+.
T Consensus 19 ~C~~----~h~fd~~~~Gy~~ll~~~~~~-----~~~~~~~~~~~~ar~~~l~----------~g-~~~~l~~~~~~~l~ 78 (268)
T d1p91a_ 19 ICPQ----RHQFDMAKEGYVNLLPVQHKR-----SRDPGDSAEMMQARRAFLD----------AG-HYQPLRDAIVAQLR 78 (268)
T ss_dssp ECTT----CCEEEBCTTSCEECSCSSSSC-----SCCCSSSHHHHHHHHHHHT----------TT-TTHHHHHHHHHHHH
T ss_pred ECCC----CCccccccCceEecccccccc-----cCCCCCCHHHHHHHHHHHH----------cC-chHHHHHHHHHHHH
Confidence 5876 689999999999988644433 2234455666666676664 22 23333455566666
Q ss_pred hhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccce
Q 036725 197 SVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDM 272 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDl 272 (392)
+.++... .+|||||||+|.++..|+++ .++++|+++ .+++.|+++.....+.+.+..++|+++++||+
T Consensus 79 ~~~~~~~---~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~-----~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~ 150 (268)
T d1p91a_ 79 ERLDDKA---TAVLDIGCGEGYYTHAFADALPEITTFGLDVSK-----VAIKAAAKRYPQVTFCVASSHRLPFSDTSMDA 150 (268)
T ss_dssp HHSCTTC---CEEEEETCTTSTTHHHHHHTCTTSEEEEEESCH-----HHHHHHHHHCTTSEEEECCTTSCSBCTTCEEE
T ss_pred HhcCCCC---CEEEEeCCCCcHHHHHHHHHCCCCEEEEecchH-----hhhhhhhcccccccceeeehhhccCCCCCEEE
Confidence 6665433 38999999999999999886 566776654 56777777765545445555599999999999
Q ss_pred EEecccccccccChHHHHHHHHHhccCCeEEEEEcCCCch
Q 036725 273 AHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLINW 312 (392)
Q Consensus 273 V~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~~~ 312 (392)
|++..++++ +.|+.|+|||||+|++++|..++
T Consensus 151 v~~~~~~~~--------~~e~~rvLkpgG~l~~~~p~~~~ 182 (268)
T d1p91a_ 151 IIRIYAPCK--------AEELARVVKPGGWVITATPGPRH 182 (268)
T ss_dssp EEEESCCCC--------HHHHHHHEEEEEEEEEEEECTTT
T ss_pred EeecCCHHH--------HHHHHHHhCCCcEEEEEeeCCcc
Confidence 999876643 58999999999999999877654
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.75 E-value=2.7e-18 Score=156.80 Aligned_cols=114 Identities=24% Similarity=0.325 Sum_probs=94.9
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYP 266 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~ 266 (392)
+..+.+++.+...++. +|||||||+|.++..|+++ +++|+|+++.++..++. .+...+.+++.++.++. .+|++
T Consensus 3 ~~~~~l~~~~~~~~~~--rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~-~~~~~~~~~~~~~~~d~~~~~~~ 79 (234)
T d1xxla_ 3 HSLGLMIKTAECRAEH--RVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASS-FAQEKGVENVRFQQGTAESLPFP 79 (234)
T ss_dssp HHHHHHHHHHTCCTTC--EEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHH-HHHHHTCCSEEEEECBTTBCCSC
T ss_pred hHHHHHHHHhCCCCCC--EEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhh-hhccccccccccccccccccccc
Confidence 4567778888877776 9999999999999999987 89999988876665443 44556677676677665 89999
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+++||+|+|..+++|+. ++..+|+++.|+|||||+++++.
T Consensus 80 ~~~fD~v~~~~~l~~~~-d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 80 DDSFDIITCRYAAHHFS-DVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp TTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccceeeeeceeeccc-CHHHHHHHHHHeeCCCcEEEEEE
Confidence 99999999999986655 89999999999999999999964
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.73 E-value=5.6e-18 Score=153.55 Aligned_cols=112 Identities=20% Similarity=0.326 Sum_probs=91.1
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSR 268 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~ 268 (392)
+.++++.++..++. +|||||||+|.++..|+++ +++++|+++.++..++. .+.+.+.+++.++.++. .+|++++
T Consensus 4 ~~~ll~~~~l~~~~--rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~-~~~~~~~~~i~~~~~d~~~l~~~~~ 80 (231)
T d1vl5a_ 4 LAKLMQIAALKGNE--EVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARA-FIEGNGHQQVEYVQGDAEQMPFTDE 80 (231)
T ss_dssp HHHHHHHHTCCSCC--EEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHHhcCCCCcC--EEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhh-ccccccccccccccccccccccccc
Confidence 34566667766655 8999999999999999987 78999888866655433 34455667776666666 8999999
Q ss_pred ccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 269 AFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+||+|+|..+++|+. ++..+|+++.|+|||||++++..
T Consensus 81 ~fD~v~~~~~l~~~~-d~~~~l~~~~r~LkpgG~l~i~~ 118 (231)
T d1vl5a_ 81 RFHIVTCRIAAHHFP-NPASFVSEAYRVLKKGGQLLLVD 118 (231)
T ss_dssp CEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccccccccC-CHHHHHHHHHHhcCCCcEEEEEe
Confidence 999999999997765 89999999999999999999964
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.68 E-value=8.6e-17 Score=150.91 Aligned_cols=114 Identities=19% Similarity=0.376 Sum_probs=89.6
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLPY 265 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp~ 265 (392)
.++.+....+..++. +|||||||+|.++..|+++ .|+++|+++.++..+.. .+...|+ +.+.++.++. .+|+
T Consensus 55 ~~~~l~~~~~l~~~~--~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~-~~~~~gl~~~v~~~~~d~~~l~~ 131 (282)
T d2o57a1 55 LASELAMTGVLQRQA--KGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEE-YNNQAGLADNITVKYGSFLEIPC 131 (282)
T ss_dssp HHHHHHHTTCCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHHHTCTTTEEEEECCTTSCSS
T ss_pred HHHHHHHhcCCCCCC--EEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhc-ccccccccccccccccccccccc
Confidence 445555555555554 9999999999999999875 68899888766555443 3344555 4566666666 8999
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++++||+|++..+++|+. ++..+|+++.|+|||||+|++..+
T Consensus 132 ~~~sfD~V~~~~~l~h~~-d~~~~l~~~~~~LkpgG~l~~~~~ 173 (282)
T d2o57a1 132 EDNSYDFIWSQDAFLHSP-DKLKVFQECARVLKPRGVMAITDP 173 (282)
T ss_dssp CTTCEEEEEEESCGGGCS-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhccchhhhcc-CHHHHHHHHHHhcCCCcEEEEEEe
Confidence 999999999999998886 899999999999999999999753
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.65 E-value=1.9e-16 Score=142.11 Aligned_cols=101 Identities=21% Similarity=0.332 Sum_probs=80.8
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccc-c
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWS-A 284 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~-~ 284 (392)
+|||||||+|.++..|++. .|+|+|+++.++..+. +.+.+.+........+...+|+++++||+|+|..+++|+. .
T Consensus 40 ~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak-~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~~~~ 118 (226)
T d1ve3a1 40 KVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAR-EYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPL 118 (226)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHH-HHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHH
T ss_pred EEEEECCCcchhhhhHhhhhcccccccccccchhhhh-hhhccccccccccccccccccccCcCceEEEEecchhhCChh
Confidence 8999999999999999987 7899988876666554 3444455555554544558999999999999999998775 2
Q ss_pred ChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 285 NDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 285 d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+..++|+++.|+|||||+|++..+.
T Consensus 119 d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 119 ELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 4578999999999999999997654
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=5.1e-16 Score=142.50 Aligned_cols=115 Identities=19% Similarity=0.211 Sum_probs=92.7
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~-~l 263 (392)
...++.+.+.+...++. +|||||||+|.++..|+++ .++|+|+++.++..+. +.+.+.|+. .+.++.++. .+
T Consensus 19 ~~~~~~l~~~~~l~pg~--~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar-~~~~~~gl~~~v~~~~~d~~~~ 95 (245)
T d1nkva_ 19 EEKYATLGRVLRMKPGT--RILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAK-RRAEELGVSERVHFIHNDAAGY 95 (245)
T ss_dssp HHHHHHHHHHTCCCTTC--EEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHH-HHHHHTTCTTTEEEEESCCTTC
T ss_pred HHHHHHHHHHcCCCCCC--EEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHH-HHHHHhhccccchhhhhHHhhc
Confidence 55778888998887776 8999999999999999875 6888988776555443 345556664 466677776 54
Q ss_pred CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 264 PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+++++||+|+|..+++|+. +...+|+++.|+|||||++++..+
T Consensus 96 -~~~~~fD~v~~~~~~~~~~-d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 96 -VANEKCDVAACVGATWIAG-GFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp -CCSSCEEEEEEESCGGGTS-SSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred -cccCceeEEEEEehhhccC-CHHHHHHHHHHHcCcCcEEEEEec
Confidence 5789999999999997776 889999999999999999999754
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.62 E-value=4.1e-16 Score=141.75 Aligned_cols=96 Identities=27% Similarity=0.439 Sum_probs=77.8
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccccccC
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSAN 285 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d 285 (392)
+|||+|||+|.++..|++. +|+|+|+++ .+++.|++++.... ...+..++|+++++||+|+|....+|+.++
T Consensus 45 ~vLDiGcG~G~~~~~l~~~~~~v~giD~s~-----~~l~~a~~~~~~~~-~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d 118 (246)
T d2avna1 45 RVLDLGGGTGKWSLFLQERGFEVVLVDPSK-----EMLEVAREKGVKNV-VEAKAEDLPFPSGAFEAVLALGDVLSYVEN 118 (246)
T ss_dssp EEEEETCTTCHHHHHHHTTTCEEEEEESCH-----HHHHHHHHHTCSCE-EECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred EEEEECCCCchhcccccccceEEEEeeccc-----cccccccccccccc-ccccccccccccccccceeeecchhhhhhh
Confidence 8999999999999999988 678887654 57778888876553 334444899999999999986543344558
Q ss_pred hHHHHHHHHHhccCCeEEEEEcCC
Q 036725 286 DGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 286 ~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+..+|+++.|+|||||+++++.|.
T Consensus 119 ~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 119 KDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHhhcCcCcEEEEEECC
Confidence 999999999999999999998754
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.54 E-value=1.6e-14 Score=128.65 Aligned_cols=93 Identities=23% Similarity=0.313 Sum_probs=77.3
Q ss_pred eEEEECCcCchHHHHHhhCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecccccccccCh
Q 036725 208 TALDTGCGVASWGAYLFKKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSAND 286 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~d~ 286 (392)
+|||||||+|.++..+.+ ++++|+++ .+++.|+++++ .+..++. .+|+++++||+|+|..+++|.. ++
T Consensus 39 ~vLDiGcG~G~~~~~~~~--~~giD~s~-----~~~~~a~~~~~---~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~-d~ 107 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPLKI--KIGVEPSE-----RMAEIARKRGV---FVLKGTAENLPLKDESFDFALMVTTICFVD-DP 107 (208)
T ss_dssp CEEEETCTTSTTHHHHTC--CEEEESCH-----HHHHHHHHTTC---EEEECBTTBCCSCTTCEEEEEEESCGGGSS-CH
T ss_pred eEEEECCCCcccccccce--EEEEeCCh-----hhccccccccc---cccccccccccccccccccccccccccccc-cc
Confidence 799999999999988864 68887765 46677777753 3344444 8999999999999999998876 89
Q ss_pred HHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 287 GMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 287 ~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
..+|+++.|+|||||++++..+..+
T Consensus 108 ~~~l~~~~~~L~pgG~l~i~~~~~~ 132 (208)
T d1vlma_ 108 ERALKEAYRILKKGGYLIVGIVDRE 132 (208)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred ccchhhhhhcCCCCceEEEEecCCc
Confidence 9999999999999999999886653
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.54 E-value=1.7e-14 Score=128.01 Aligned_cols=98 Identities=19% Similarity=0.363 Sum_probs=80.6
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
+|||||||+|..+..|+++ .++++|+++.++..+.. .+.+.+++++.+...+. .+++ +++||+|+|..+++|+.+
T Consensus 33 rvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~-~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~~~~ 110 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLER-IKAAEGLDNLQTDLVDLNTLTF-DGEYDFILSTVVMMFLEA 110 (198)
T ss_dssp EEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-HHHHTTCTTEEEEECCTTTCCC-CCCEEEEEEESCGGGSCT
T ss_pred cEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHH-Hhhhccccchhhhheecccccc-cccccEEEEeeeeecCCH
Confidence 8999999999999999998 78899988876665443 45567777777777776 5554 789999999999988764
Q ss_pred Ch-HHHHHHHHHhccCCeEEEEEc
Q 036725 285 ND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 285 d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.. ..+++++.++|+|||++++..
T Consensus 111 ~~~~~~l~~~~~~L~pgG~~~~~~ 134 (198)
T d2i6ga1 111 QTIPGLIANMQRCTKPGGYNLIVA 134 (198)
T ss_dssp THHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 33 689999999999999999965
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.54 E-value=1.5e-14 Score=132.10 Aligned_cols=115 Identities=17% Similarity=0.270 Sum_probs=82.0
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSR 268 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~ 268 (392)
++..+.......+. ++|||||||+|.++..|+++ +++|+|+++.++..++.+ +.+++....+...+...++++ +
T Consensus 29 ~~~~~~~~~~~~~~--~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~-~~~~~~~i~~~~~d~~~l~~~-~ 104 (251)
T d1wzna1 29 FVEEIFKEDAKREV--RRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRK-AKERNLKIEFLQGDVLEIAFK-N 104 (251)
T ss_dssp HHHHHHHHTCSSCC--CEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHHTTCCCEEEESCGGGCCCC-S
T ss_pred HHHHHHHHhcCCCC--CEEEEeCCCCCccchhhcccceEEEEEeeccccccccccc-cccccccchheehhhhhcccc-c
Confidence 34444444443333 48999999999999999988 789998888766655443 344555555555555588886 5
Q ss_pred ccceEEeccc-ccccc-cChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 269 AFDMAHCSRC-LIPWS-ANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 269 sFDlV~~~~~-l~~~~-~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+||+|+|... +++.. ++...+|+++.++|||||+|++..+.
T Consensus 105 ~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 105 EFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp CEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 8999999754 43332 24468999999999999999997644
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=5.5e-15 Score=133.53 Aligned_cols=101 Identities=16% Similarity=0.176 Sum_probs=78.3
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPW 282 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~ 282 (392)
.+|||||||+|.++..|+++ .|+++|+++.++..+.. .+.+.+.++..+..++. .+++++++||+|++..+++|+
T Consensus 62 ~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~-~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~h~ 140 (222)
T d2ex4a1 62 SCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKT-YLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHL 140 (222)
T ss_dssp SEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHH-HTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGGS
T ss_pred CEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccc-ccccccccccccccccccccccccccccccccccccccc
Confidence 48999999999999998765 68899887765554433 22233445556666665 888889999999999999887
Q ss_pred ccC-hHHHHHHHHHhccCCeEEEEEcC
Q 036725 283 SAN-DGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 283 ~~d-~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.+. ...+|+++.++|||||++++..+
T Consensus 141 ~~~~~~~~l~~i~~~Lk~~G~~~i~~~ 167 (222)
T d2ex4a1 141 TDQHLAEFLRRCKGSLRPNGIIVIKDN 167 (222)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence 632 25899999999999999999753
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.52 E-value=1.5e-14 Score=131.07 Aligned_cols=144 Identities=14% Similarity=0.095 Sum_probs=99.7
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEeccccccccc
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
+|||||||+|.++..|+++ .|+++|+++ .+++.|+++...++.++.++. .+++ +++||+|+|..+++|..
T Consensus 23 ~VLDiGcG~G~~~~~l~~~g~~v~giD~s~-----~~i~~a~~~~~~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh~~- 95 (225)
T d2p7ia1 23 NLLELGSFKGDFTSRLQEHFNDITCVEASE-----EAISHAQGRLKDGITYIHSRFEDAQL-PRRYDNIVLTHVLEHID- 95 (225)
T ss_dssp CEEEESCTTSHHHHHHTTTCSCEEEEESCH-----HHHHHHHHHSCSCEEEEESCGGGCCC-SSCEEEEEEESCGGGCS-
T ss_pred cEEEEeCCCcHHHHHHHHcCCeEEEEeCcH-----HHhhhhhccccccccccccccccccc-ccccccccccceeEecC-
Confidence 7999999999999999987 889997765 466677666555666677766 5554 68999999999998776
Q ss_pred ChHHHHHHHH-HhccCCeEEEEEcCCCchhhhh-hhcc---c-----ChHhHH------HHHHHHHHHHHHcCceeccee
Q 036725 285 NDGMYMMEID-RVLRPGGYWVLSGPLINWRTNY-QAWQ---R-----PIKELE------EEQRKIEEIAKLLCWEKKHEK 348 (392)
Q Consensus 285 d~~~~L~ei~-RvLkPGG~lvl~~p~~~~~~~~-~~w~---~-----~~e~l~------~~~~~i~~l~~~l~W~~~~~~ 348 (392)
++..+|.++. |+|||||.++++.|........ ..|. . ...... .....++++.++..++.+...
T Consensus 96 d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~ 175 (225)
T d2p7ia1 96 DPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 175 (225)
T ss_dssp SHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEEE
Confidence 8999999997 8999999999998765322111 0000 0 000000 012456777777777654422
Q ss_pred ccEEEEEecCCcc
Q 036725 349 GETAIWQKRINYD 361 (392)
Q Consensus 349 ~~~~iw~KP~~~~ 361 (392)
.++-||.++.
T Consensus 176 ---~~~~kp~~~~ 185 (225)
T d2p7ia1 176 ---GIFFKALANF 185 (225)
T ss_dssp ---EEEECCSCHH
T ss_pred ---EEEeccccHH
Confidence 4566887754
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.52 E-value=2.8e-14 Score=133.78 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=85.3
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~ 262 (392)
+.+++.+++.+.... ...+|||||||+|.++..|++. .|+++|+++.++..+.. .+.+.+. .+.+...+. .
T Consensus 12 ~d~l~~l~~~~~~~~-~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~-~~~~~~~-~~~f~~~d~~~ 88 (281)
T d2gh1a1 12 DDYVSFLVNTVWKIT-KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARE-LFRLLPY-DSEFLEGDATE 88 (281)
T ss_dssp HHHHHHHHHTTSCCC-SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHH-HHHSSSS-EEEEEESCTTT
T ss_pred HHHHHHHHHHHhccC-CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhc-ccccccc-ccccccccccc
Confidence 456777776553222 2348999999999999999864 58999887765544332 2233343 444555555 7
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
++++ ++||+|+|..+++|+. ++..+|+++.|+|||||++++..|.
T Consensus 89 ~~~~-~~fD~v~~~~~l~~~~-d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 89 IELN-DKYDIAICHAFLLHMT-TPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp CCCS-SCEEEEEEESCGGGCS-SHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cccc-CCceEEEEehhhhcCC-CHHHHHHHHHHHcCcCcEEEEEECC
Confidence 7875 5799999999997766 8999999999999999999998754
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.51 E-value=1.7e-14 Score=130.38 Aligned_cols=101 Identities=15% Similarity=0.085 Sum_probs=73.4
Q ss_pred eEEEECCcCchHHHHHhhC------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccc
Q 036725 208 TALDTGCGVASWGAYLFKK------NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~ 281 (392)
+|||||||+|..+..|++. +|+|+|+++.++..+..+.+............++ ..+++.+.+|+|+|+.++++
T Consensus 42 ~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d-~~~~~~~~~d~i~~~~~l~~ 120 (225)
T d1im8a_ 42 NVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCND-IRHVEIKNASMVILNFTLQF 120 (225)
T ss_dssp EEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSC-TTTCCCCSEEEEEEESCGGG
T ss_pred EEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccch-hhccccccceeeEEeeeccc
Confidence 8999999999999988863 6889988776655554433322222334334333 34555678999999988876
Q ss_pred cc-cChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 282 WS-ANDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 282 ~~-~d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+. ++...+|++++|+|||||.|++..+.
T Consensus 121 ~~~~d~~~~l~~i~~~LkpgG~li~~~~~ 149 (225)
T d1im8a_ 121 LPPEDRIALLTKIYEGLNPNGVLVLSEKF 149 (225)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cChhhHHHHHHHHHHhCCCCceeeccccc
Confidence 64 35579999999999999999997544
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.50 E-value=3.9e-14 Score=133.59 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=87.9
Q ss_pred ccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCc-EEEEeccc
Q 036725 186 HGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPA-VIGVLGTI 261 (392)
Q Consensus 186 ~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~~~~ 261 (392)
...+..++.+++.+...+|. +|||||||.|.++.+++++ .++|+++++..+..+. +.+.+.++.. +.+...+
T Consensus 44 ~Aq~~k~~~~~~~l~l~~G~--~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~-~~~~~~~l~~~v~~~~~d- 119 (291)
T d1kpia_ 44 EAQYAKRKLALDKLNLEPGM--TLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDK-AMFDEVDSPRRKEVRIQG- 119 (291)
T ss_dssp HHHHHHHHHHHHTTCCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHHSCCSSCEEEEECC-
T ss_pred HHHHHHHHHHHHhcCCCCCC--EEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHH-HHHHhhccchhhhhhhhc-
Confidence 33455788888999887776 9999999999999999876 7788877765443333 2344556543 3333333
Q ss_pred cCCCCCCccceEEeccccccccc--------ChHHHHHHHHHhccCCeEEEEEc
Q 036725 262 KLPYPSRAFDMAHCSRCLIPWSA--------NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 262 ~lp~~d~sFDlV~~~~~l~~~~~--------d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.++++++||.|+|..+++|+.+ +...+++++.|+|||||.+++.+
T Consensus 120 -~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~ 172 (291)
T d1kpia_ 120 -WEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT 172 (291)
T ss_dssp -GGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred -ccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence 3456889999999999999863 24789999999999999999853
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.48 E-value=4.8e-14 Score=128.95 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=79.1
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPS 267 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d 267 (392)
..+.+.+.+.......++|||||||+|.++..|+++ +++|+|+|+.++..++. .+...+.+.. ++.++. .+++ +
T Consensus 23 ~~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~-~~~~~~~~v~-~~~~d~~~~~~-~ 99 (246)
T d1y8ca_ 23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAEN-KFRSQGLKPR-LACQDISNLNI-N 99 (246)
T ss_dssp HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHH-HHHHTTCCCE-EECCCGGGCCC-S
T ss_pred HHHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccc-cccccCccce-eeccchhhhcc-c
Confidence 334444444322233358999999999999999997 68899887766665543 3344565544 445554 6665 5
Q ss_pred CccceEEecc-cccccc--cChHHHHHHHHHhccCCeEEEEEcC
Q 036725 268 RAFDMAHCSR-CLIPWS--ANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 268 ~sFDlV~~~~-~l~~~~--~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++||+|+|.. ++.++. ++...+|+++.++|||||.|++..+
T Consensus 100 ~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 100 RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 7899999863 444443 2446799999999999999998653
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.48 E-value=6.8e-14 Score=131.24 Aligned_cols=114 Identities=15% Similarity=0.171 Sum_probs=84.8
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC-cEEEEeccccCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP-AVIGVLGTIKLP 264 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~-~~~~~~~~~~lp 264 (392)
...++.+++.+...++. +|||||||+|.++.+++++ .|+++|+++..+..+. +.+++.++. .+.....+.+.
T Consensus 38 ~~k~~~~~~~l~l~~g~--~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~-~~~~~~~l~~~~~~~~~d~~~- 113 (280)
T d2fk8a1 38 YAKVDLNLDKLDLKPGM--TLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCE-QVLASIDTNRSRQVLLQGWED- 113 (280)
T ss_dssp HHHHHHHHTTSCCCTTC--EEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHH-HHHHTSCCSSCEEEEESCGGG-
T ss_pred HHHHHHHHHHcCCCCCC--EEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHH-HHHHhhccccchhhhhhhhhh-
Confidence 44678888888877776 9999999999999998876 7888887765444332 234445554 33344444322
Q ss_pred CCCCccceEEeccccccccc-ChHHHHHHHHHhccCCeEEEEEc
Q 036725 265 YPSRAFDMAHCSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+++||.|++..+++|+.. +...+++++.|+|||||.+++..
T Consensus 114 -~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 114 -FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp -CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred -hccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 2578999999999999873 33789999999999999999853
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.48 E-value=9.5e-14 Score=122.95 Aligned_cols=135 Identities=15% Similarity=0.100 Sum_probs=92.9
Q ss_pred cCCeEEecCCCCCC-CccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHH
Q 036725 171 EGNVFRFPGGGTQF-PHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFAL 247 (392)
Q Consensus 171 ~~~~~~fp~~g~~f-~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~ 247 (392)
.|+.+.|......| ..+.+...+.+++.+...++. +|||+|||+|.++..+++. +++++|+++..+..+.. .++
T Consensus 19 ~g~~~~~~t~~gvF~~~~~d~~t~lLi~~l~~~~~~--~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~-n~~ 95 (194)
T d1dusa_ 19 RGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDD--DILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKE-NIK 95 (194)
T ss_dssp TTEEEEEEEETTSTTTTSCCHHHHHHHHHCCCCTTC--EEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHH-HHH
T ss_pred CCeeEEEEcCCCccCCCCcCHHHHHHHHhCCcCCCC--eEEEEeecCChhHHHHHhhccccceeeeccccchhHHH-HHH
Confidence 45555553322233 223333445567777755554 8999999999999999887 89999998765555443 333
Q ss_pred HcCCC--cEEEEeccccCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 248 ERGVP--AVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 248 ~rg~~--~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
..++. .+.+..++...++++++||+|+++..+++..+....++.++.++|||||.+++...
T Consensus 96 ~~~l~~~~i~~~~~d~~~~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 158 (194)
T d1dusa_ 96 LNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp HTTCTTSCEEEEECSTTTTCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HhCCccceEEEEEcchhhhhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEe
Confidence 44443 35556666544777899999999877654442347899999999999999988653
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.47 E-value=6.4e-14 Score=128.93 Aligned_cols=102 Identities=21% Similarity=0.207 Sum_probs=76.3
Q ss_pred eEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCCC-CCCccceEEecccccc
Q 036725 208 TALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLPY-PSRAFDMAHCSRCLIP 281 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp~-~d~sFDlV~~~~~l~~ 281 (392)
+|||||||+|..+..+++. .++|+|+++.++..+..+ +.+.+. ..+.+..++. ..++ .+++||+|+|..++++
T Consensus 27 ~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r-~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l~~ 105 (252)
T d1ri5a_ 27 SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR-ARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSFHY 105 (252)
T ss_dssp EEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHH-HHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCGGG
T ss_pred EEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHH-HHhcCCCcceEEEEcchhhhcccccccceEEEEcceeee
Confidence 8999999999998888875 589998887766555432 233332 3555555554 5555 4779999999999887
Q ss_pred cccC---hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 282 WSAN---DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 282 ~~~d---~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
...+ ...++.++.|+|||||+|+++.|..
T Consensus 106 ~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~ 137 (252)
T d1ri5a_ 106 AFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 137 (252)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred cCCCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence 6533 3589999999999999999986543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.47 E-value=1e-13 Score=130.25 Aligned_cols=116 Identities=18% Similarity=0.239 Sum_probs=87.0
Q ss_pred ccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-
Q 036725 186 HGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI- 261 (392)
Q Consensus 186 ~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~- 261 (392)
......++.+++.+...+|. +|||||||.|.++.++++. .|+|+++++.....+..+.+.......+.+...+.
T Consensus 45 eAQ~~k~~~~~~~l~l~~G~--~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~ 122 (285)
T d1kpga_ 45 EAQIAKIDLALGKLGLQPGM--TLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE 122 (285)
T ss_dssp HHHHHHHHHHHTTTTCCTTC--EEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG
T ss_pred HHHHHHHHHHHHHcCCCCCC--EEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhh
Confidence 34455788899999887776 9999999999999998886 78888777654443333222222335555565555
Q ss_pred cCCCCCCccceEEeccccccccc-ChHHHHHHHHHhccCCeEEEEE
Q 036725 262 KLPYPSRAFDMAHCSRCLIPWSA-NDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 262 ~lp~~d~sFDlV~~~~~l~~~~~-d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.+ +++||.|++..+++|+.. +...+++++.|+|||||.+++.
T Consensus 123 ~~---~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~ 165 (285)
T d1kpga_ 123 QF---DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH 165 (285)
T ss_dssp GC---CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred cc---cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEE
Confidence 44 468999999999999863 3478999999999999999984
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.46 E-value=8.2e-14 Score=128.78 Aligned_cols=110 Identities=17% Similarity=0.268 Sum_probs=82.8
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHc--CCCcEEEEeccc-cCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALER--GVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~r--g~~~~~~~~~~~-~lp~ 265 (392)
...+++.++.... .+|||+|||+|.++..|+.+ .|+++|.++. +++.|+++ +.+.+.+...+. .+++
T Consensus 82 s~~fl~~l~~~~~--~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~-----~l~~a~~~~~~~~~~~~~~~d~~~~~~ 154 (254)
T d1xtpa_ 82 SRNFIASLPGHGT--SRALDCGAGIGRITKNLLTKLYATTDLLEPVKH-----MLEEAKRELAGMPVGKFILASMETATL 154 (254)
T ss_dssp HHHHHHTSTTCCC--SEEEEETCTTTHHHHHTHHHHCSEEEEEESCHH-----HHHHHHHHTTTSSEEEEEESCGGGCCC
T ss_pred HHHHHhhCCCCCC--CeEEEecccCChhhHHHHhhcCceEEEEcCCHH-----HHHhhhccccccccceeEEcccccccc
Confidence 3445555654333 38999999999999988764 6888877654 55555544 334555555555 8889
Q ss_pred CCCccceEEecccccccccC-hHHHHHHHHHhccCCeEEEEEcC
Q 036725 266 PSRAFDMAHCSRCLIPWSAN-DGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d-~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
++++||+|++..+++|+.++ ...+|+++.++|||||++++..+
T Consensus 155 ~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~ 198 (254)
T d1xtpa_ 155 PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEec
Confidence 89999999999999888732 25889999999999999999754
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.45 E-value=6.2e-14 Score=129.66 Aligned_cols=95 Identities=21% Similarity=0.272 Sum_probs=74.2
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEeccccccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIPWSA 284 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~ 284 (392)
.+|||+|||+|.++..+++. +|+++|+++.++..+.. .++.+++...+ ..++...++++++||+|+++... .
T Consensus 122 ~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~-na~~n~~~~~~-~~~d~~~~~~~~~fD~V~ani~~----~ 195 (254)
T d2nxca1 122 DKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEA-NAKRNGVRPRF-LEGSLEAALPFGPFDLLVANLYA----E 195 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHH-HHHHTTCCCEE-EESCHHHHGGGCCEEEEEEECCH----H
T ss_pred CEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHH-HHHHcCCceeE-Eeccccccccccccchhhhcccc----c
Confidence 49999999999999988876 89999999987776554 56677776654 44444334567899999987432 1
Q ss_pred ChHHHHHHHHHhccCCeEEEEEc
Q 036725 285 NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 285 d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....++.++.|+|||||++++++
T Consensus 196 ~l~~l~~~~~~~LkpGG~lilSg 218 (254)
T d2nxca1 196 LHAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cHHHHHHHHHHhcCCCcEEEEEe
Confidence 34678899999999999999975
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.42 E-value=8.1e-13 Score=116.08 Aligned_cols=114 Identities=17% Similarity=0.157 Sum_probs=88.8
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-c
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-K 262 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~ 262 (392)
..++....++..+...++. +|||+|||+|.++..+++. +|+++|+++.++..+.. .+++.++ +++.+..++. .
T Consensus 17 t~~eir~~il~~l~~~~g~--~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~-n~~~~gl~~~v~~~~gda~~ 93 (186)
T d1l3ia_ 17 TAMEVRCLIMCLAEPGKND--VAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEM-NLQRHGLGDNVTLMEGDAPE 93 (186)
T ss_dssp CCHHHHHHHHHHHCCCTTC--EEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHH-HHHHTTCCTTEEEEESCHHH
T ss_pred ChHHHHHHHHHhcCCCCCC--EEEEEECCeEcccccccccceEEEEecCCHHHHHHHHH-HHHHcCCCcceEEEECchhh
Confidence 3456667777777766665 8999999999999999887 79999998866655444 4556666 4777777776 6
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+++...||+|++..... +...++.++.+.|||||++++..
T Consensus 94 ~~~~~~~~D~v~~~~~~~----~~~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 94 ALCKIPDIDIAVVGGSGG----ELQEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp HHTTSCCEEEEEESCCTT----CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccCCcCEEEEeCccc----cchHHHHHHHHHhCcCCEEEEEe
Confidence 667778999999875432 45688999999999999999865
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.9e-13 Score=127.36 Aligned_cols=100 Identities=12% Similarity=0.009 Sum_probs=69.4
Q ss_pred eEEEECCcCchHHHHHhhC----------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEe--ccc-------cCCCCCC
Q 036725 208 TALDTGCGVASWGAYLFKK----------NVITMSFAPRDSHEAQVQFALERGVPAVIGVL--GTI-------KLPYPSR 268 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~--~~~-------~lp~~d~ 268 (392)
+|||||||+|.++..|++. .++++|.++.++..+..+.+....++.+.+.. .+. ..+++++
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQ 122 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCC
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCC
Confidence 7999999999998877653 35666555443333333222222334433321 111 3467789
Q ss_pred ccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 269 AFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 269 sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
+||+|++.++++|+. ++..+|+++.++|+|||++++..+
T Consensus 123 ~fD~I~~~~~l~~~~-d~~~~l~~l~~~LkpgG~l~i~~~ 161 (280)
T d1jqea_ 123 KWDFIHMIQMLYYVK-DIPATLKFFHSLLGTNAKMLIIVV 161 (280)
T ss_dssp CEEEEEEESCGGGCS-CHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ceeEEEEccceecCC-CHHHHHHHHHhhCCCCCEEEEEEe
Confidence 999999999997665 899999999999999999988764
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.37 E-value=1.1e-12 Score=120.68 Aligned_cols=111 Identities=23% Similarity=0.358 Sum_probs=79.8
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccccCCCCC
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKLPYPS 267 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~~lp~~d 267 (392)
+.+++.++... .++|||||||+|.++..++++ .++++|+ +.++..+.. ...+.++ ..+.++.++..-+.+
T Consensus 70 ~~~~~~~d~~~--~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~-~~~~~~~~~rv~~~~~D~~~~~~- 144 (253)
T d1tw3a2 70 DAPAAAYDWTN--VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARS-YLKDEGLSDRVDVVEGDFFEPLP- 144 (253)
T ss_dssp HHHHHHSCCTT--CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHH-HHHHTTCTTTEEEEECCTTSCCS-
T ss_pred HHHHhhcCCcc--CCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHH-HHHHhhcccchhhccccchhhcc-
Confidence 45555565433 349999999999999999986 5667776 434444433 3444443 567777777633443
Q ss_pred CccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEcC
Q 036725 268 RAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.+||+|++..++++|.++. ..+|+++.|+|||||++++...
T Consensus 145 ~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 145 RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence 5699999999999887333 5789999999999999998653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=7.3e-13 Score=120.02 Aligned_cols=111 Identities=16% Similarity=0.146 Sum_probs=79.7
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC----------------
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV---------------- 251 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~---------------- 251 (392)
.+++.+.+.+....+. +|||+|||+|..+.+|+++ .|+|+|+|+. +++.|+++..
T Consensus 32 ~l~~~~~~~l~~~~~~--rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~-----ai~~a~~~~~~~~~~~~~~~~~~~~~ 104 (229)
T d2bzga1 32 LLKKHLDTFLKGKSGL--RVFFPLCGKAVEMKWFADRGHSVVGVEISEL-----GIQEFFTEQNLSYSEEPITEIPGTKV 104 (229)
T ss_dssp HHHHHHHHHHTTCCSC--EEEETTCTTCTHHHHHHHTTCEEEEECSCHH-----HHHHHHHHTTCCEEEEECTTSTTCEE
T ss_pred HHHHHHHHhcCCCCCC--EEEEeCCCCcHHHHHHHhCCCcEEEEeCCHH-----HHHHHHHHhhccccccchhcccccce
Confidence 3445555555544443 8999999999999999998 7888877665 4444433211
Q ss_pred -----CcEEEEeccc-cC-CCCCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 252 -----PAVIGVLGTI-KL-PYPSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 252 -----~~~~~~~~~~-~l-p~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..+.+..++. .+ +...+.||+|+...+++++.++. ..+++++.++|||||++++..
T Consensus 105 ~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~ 168 (229)
T d2bzga1 105 FKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCV 168 (229)
T ss_dssp EEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeecCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEE
Confidence 1233444443 44 45678999999999998886554 789999999999999988865
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=5.6e-13 Score=120.96 Aligned_cols=112 Identities=19% Similarity=0.189 Sum_probs=76.5
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc---c
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI---K 262 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~---~ 262 (392)
..+++.+++.+.. .+ .+|||||||+|.++..++++ .++++|+++.++..+.. .+.+.+ ..+.....+. .
T Consensus 40 ~~~~~~la~~~~~-~g--~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~-~~~~~~-~~~~~~~~~~~~~~ 114 (229)
T d1zx0a1 40 TPYMHALAAAASS-KG--GRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRD-WAPRQT-HKVIPLKGLWEDVA 114 (229)
T ss_dssp HHHHHHHHHHHTT-TC--EEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHH-HGGGCS-SEEEEEESCHHHHG
T ss_pred HHHHHHHHHhhcc-CC--CeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHH-Hhhhcc-cccccccccccccc
Confidence 4566666666653 33 38999999999999999886 68888887754443322 222223 2333333332 4
Q ss_pred CCCCCCccceEEe-----cccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 263 LPYPSRAFDMAHC-----SRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 263 lp~~d~sFDlV~~-----~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.++++++||.|+. ...+.|+. +...+++++.|+|||||+|++.
T Consensus 115 ~~~~~~~fD~i~fD~~~~~~~~~~~~-~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 115 PTLPDGHFDGILYDTYPLSEETWHTH-QFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp GGSCTTCEEEEEECCCCCBGGGTTTH-HHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccccccceeeccccccccccccc-CHHHHHHHHHHHcCCCcEEEEE
Confidence 5678899999974 34444444 6788999999999999999884
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.35 E-value=5.3e-13 Score=116.35 Aligned_cols=106 Identities=14% Similarity=0.125 Sum_probs=73.6
Q ss_pred HHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCC----------------CcEEE
Q 036725 195 LASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGV----------------PAVIG 256 (392)
Q Consensus 195 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~----------------~~~~~ 256 (392)
....+...++. +|||+|||+|..+.+|+++ .|+|+|+++. +++.|+++.. ....+
T Consensus 12 ~~~~l~~~~~~--rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~-----~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T d1pjza_ 12 YWSSLNVVPGA--RVLVPLCGKSQDMSWLSGQGYHVVGAELSEA-----AVERYFTERGEQPHITSQGDFKVYAAPGIEI 84 (201)
T ss_dssp HHHHHCCCTTC--EEEETTTCCSHHHHHHHHHCCEEEEEEECHH-----HHHHHHHHHCSCSEEEEETTEEEEECSSSEE
T ss_pred HHHHcCCCCCC--EEEEecCcCCHHHHHHHHcCCceEeecccHH-----HHHHHHHHhccccchhhhhhhhhccccccce
Confidence 33444444554 9999999999999999988 6788876655 4445544310 11122
Q ss_pred Eeccc-cCC-CCCCccceEEecccccccccC-hHHHHHHHHHhccCCeEEEEEc
Q 036725 257 VLGTI-KLP-YPSRAFDMAHCSRCLIPWSAN-DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 257 ~~~~~-~lp-~~d~sFDlV~~~~~l~~~~~d-~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..++. .++ ....+||+|++..++++...+ ...+++++.++|||||++++..
T Consensus 85 ~~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 85 WCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp EEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred ecccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence 33333 443 335789999999888776643 3689999999999999988864
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.34 E-value=2.3e-12 Score=115.80 Aligned_cols=108 Identities=17% Similarity=0.148 Sum_probs=83.0
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL 263 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l 263 (392)
.....+++.+...++. +|||||||+|++++.|++. .|+++|+++..+..+.. ..+..++.++..+.++. ..
T Consensus 62 ~~~a~~l~~l~l~~g~--~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~-~~~~~~~~n~~~~~~d~~~~ 138 (213)
T d1dl5a1 62 SLMALFMEWVGLDKGM--RVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR-NVERLGIENVIFVCGDGYYG 138 (213)
T ss_dssp HHHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH-HHHHTTCCSEEEEESCGGGC
T ss_pred hhhHHHHHhhhccccc--eEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhh-hHhhhcccccccccCchHHc
Confidence 4566677888877776 9999999999999988764 58999988765554443 44456677777777766 66
Q ss_pred CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++.+++||+|++..++.+.+ .++.++|||||.+++..
T Consensus 139 ~~~~~~fD~I~~~~~~~~~p-------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 139 VPEFSPYDVIFVTVGVDEVP-------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp CGGGCCEEEEEECSBBSCCC-------HHHHHHEEEEEEEEEEB
T ss_pred cccccchhhhhhhccHHHhH-------HHHHHhcCCCcEEEEEE
Confidence 66678999999998876654 56788999999999854
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.33 E-value=4.2e-12 Score=117.59 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=85.7
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHH--cCCCcEEEEeccc-c
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALE--RGVPAVIGVLGTI-K 262 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~--rg~~~~~~~~~~~-~ 262 (392)
-+..++..+...++. +|||+|||+|+++..|++. .++++|+++..+..+..++... ....++.++.++. .
T Consensus 84 D~s~Ii~~l~i~PG~--~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~ 161 (264)
T d1i9ga_ 84 DAAQIVHEGDIFPGA--RVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD 161 (264)
T ss_dssp HHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred HHHHHHHHhCCCCCC--EEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccc
Confidence 355667777777776 9999999999999999875 6889988765544444333222 2346777777776 7
Q ss_pred CCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
.++++++||.|++. .+ ++..++.++.|+|||||.+++..|..
T Consensus 162 ~~~~~~~fDaV~ld-----lp-~P~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 162 SELPDGSVDRAVLD-----ML-APWEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp CCCCTTCEEEEEEE-----SS-CGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ccccCCCcceEEEe-----cC-CHHHHHHHHHhccCCCCEEEEEeCcc
Confidence 78999999999863 33 67789999999999999999988766
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=4e-13 Score=122.90 Aligned_cols=117 Identities=15% Similarity=0.059 Sum_probs=79.7
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCc----------------
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPA---------------- 253 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~---------------- 253 (392)
..+.+.+........+|||||||+|.++..++.. .|+++|+++.++..++.+... .....
T Consensus 39 ~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 117 (257)
T d2a14a1 39 ECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKK-EPGAYDWTPAVKFACELEGNS 117 (257)
T ss_dssp HHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHT-CTTCCCCHHHHHHHHHHTTCG
T ss_pred HHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhh-ccccchhhhHHHHHHHhcccc
Confidence 4444444433334558999999999988777755 689999988776665443321 11100
Q ss_pred -------------EE-EE-e---cc-ccCCCCCCccceEEeccccccccc---ChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 254 -------------VI-GV-L---GT-IKLPYPSRAFDMAHCSRCLIPWSA---NDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 254 -------------~~-~~-~---~~-~~lp~~d~sFDlV~~~~~l~~~~~---d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+. .. . .+ ...++++++||+|++..+++|... +...+++++.|+|||||+|++.++..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~ 196 (257)
T d2a14a1 118 GRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLR 196 (257)
T ss_dssp GGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred chHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence 00 01 1 11 134678999999999999987763 34689999999999999999976443
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.31 E-value=4e-12 Score=116.88 Aligned_cols=110 Identities=13% Similarity=0.156 Sum_probs=78.6
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCC
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPS 267 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d 267 (392)
..++..+...+|. +|||+|||+|.++..|++. .|+++|+++..+..+..++....+..++.+..++....+++
T Consensus 75 ~~Ii~~l~i~pG~--rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~ 152 (250)
T d1yb2a1 75 SYIIMRCGLRPGM--DILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD 152 (250)
T ss_dssp ------CCCCTTC--EEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS
T ss_pred HHHHHHcCCCCcC--EEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccccc
Confidence 3445566666665 9999999999999998864 68999887654444433333333567788888877555778
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++||+|++. .. ++..++.++.++|||||+|++..|..
T Consensus 153 ~~fD~V~ld-----~p-~p~~~l~~~~~~LKpGG~lv~~~P~i 189 (250)
T d1yb2a1 153 QMYDAVIAD-----IP-DPWNHVQKIASMMKPGSVATFYLPNF 189 (250)
T ss_dssp CCEEEEEEC-----CS-CGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred ceeeeeeec-----CC-chHHHHHHHHHhcCCCceEEEEeCCc
Confidence 999999864 22 55678999999999999999987754
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.31 E-value=3.5e-12 Score=117.71 Aligned_cols=111 Identities=23% Similarity=0.260 Sum_probs=79.5
Q ss_pred HHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccccCCCCC
Q 036725 193 EELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKLPYPS 267 (392)
Q Consensus 193 ~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~~lp~~d 267 (392)
..+++.++... .++|||||||+|.++..|+++ .++++|+ +..+.. ..+...+.++ +.+.++.++...+.+
T Consensus 71 ~~~~~~~d~~~--~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~-a~~~~~~~~~~~ri~~~~~d~~~~~p- 145 (256)
T d1qzza2 71 EAPADAYDWSA--VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAER-ARRRFADAGLADRVTVAEGDFFKPLP- 145 (256)
T ss_dssp HHHHHTSCCTT--CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHH-HHHHHHHTTCTTTEEEEECCTTSCCS-
T ss_pred HHHHhcCCCcc--CCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHH-HHHHHhhcCCcceeeeeeeecccccc-
Confidence 44555555333 348999999999999999986 5677776 323333 3333344444 556777777654554
Q ss_pred CccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEcC
Q 036725 268 RAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.+||+|++.+++++|.++. ..+|++++++|||||.|++...
T Consensus 146 ~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 146 VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 4599999999999997433 5789999999999999998753
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.30 E-value=2.6e-12 Score=114.77 Aligned_cols=98 Identities=14% Similarity=0.170 Sum_probs=78.7
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC--CCCCccceEEeccccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP--YPSRAFDMAHCSRCLI 280 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp--~~d~sFDlV~~~~~l~ 280 (392)
.|||||||+|.++..|++. .++|+|++...+..+. +.+.+.++.++.++.++. .+. ++++++|.|++.+..
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~-~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~- 109 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAV-QKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD- 109 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHH-HHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC-
T ss_pred eEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHH-HHHHHHhccCchhcccchhhhhcccCchhhhcccccccc-
Confidence 7999999999999999886 7899988876665543 456677888888888876 444 789999999987654
Q ss_pred ccccCh--------HHHHHHHHHhccCCeEEEEEc
Q 036725 281 PWSAND--------GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 281 ~~~~d~--------~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+|.... ..+|.++.|+|||||.|++.+
T Consensus 110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 665433 479999999999999999965
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.30 E-value=6.1e-13 Score=124.83 Aligned_cols=116 Identities=19% Similarity=0.256 Sum_probs=76.6
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCC-----cEEEEeccc-
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVP-----AVIGVLGTI- 261 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~-----~~~~~~~~~- 261 (392)
.+.+.+.+.+....+ ++|||+|||+|.++..|+++ +|+|+|+++.++..+..+... ++.. .........
T Consensus 43 ~~~~~l~~~l~~~~~--~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~-~~~~~~~~~~~~~~~~~~~ 119 (292)
T d1xvaa_ 43 EYKAWLLGLLRQHGC--HRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWN-RRKEPAFDKWVIEEANWLT 119 (292)
T ss_dssp HHHHHHHHHHHHTTC--CEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-TTTSHHHHTCEEEECCGGG
T ss_pred HHHHHHHHHhhhcCC--CEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHh-cccccccceeeeeeccccc
Confidence 344445555543333 38999999999999999998 789998888766655443322 2221 112122211
Q ss_pred ---cCCCCCCccceEEecc-ccccccc------ChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 262 ---KLPYPSRAFDMAHCSR-CLIPWSA------NDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 262 ---~lp~~d~sFDlV~~~~-~l~~~~~------d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
.+|. .++||+|+|.. ++.|+.. +...+|+++.|+|||||+|++...+
T Consensus 120 ~~~~~~~-~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 120 LDKDVPA-GDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176 (292)
T ss_dssp HHHHSCC-TTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cccccCC-CCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence 2333 56899999864 5656542 3467999999999999999997543
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.26 E-value=6.8e-12 Score=114.04 Aligned_cols=105 Identities=18% Similarity=0.236 Sum_probs=74.7
Q ss_pred hhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc--cCCCCCCcc
Q 036725 197 SVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--KLPYPSRAF 270 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~--~lp~~d~sF 270 (392)
+.++..++. +|||+|||+|.++..|++. .|+++|+++.++..+.. .+.++ ++...+..+. ..++.+..+
T Consensus 68 ~~l~ikpG~--~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~-~a~~~--~ni~~i~~d~~~~~~~~~~~~ 142 (230)
T d1g8sa_ 68 KVMPIKRDS--KILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLD-ACAER--ENIIPILGDANKPQEYANIVE 142 (230)
T ss_dssp CCCCCCTTC--EEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHH-HTTTC--TTEEEEECCTTCGGGGTTTCC
T ss_pred HhCCCCCCC--EEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHH-HHhhh--cccceEEEeeccCcccccccc
Confidence 344555565 9999999999999999875 68999998876554322 23333 4444455554 334567777
Q ss_pred ceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 271 DMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 271 DlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
|++++...+. ..++...++.++.+.|||||+++++.
T Consensus 143 ~v~~i~~~~~-~~~~~~~~l~~~~r~LKpgG~~~i~~ 178 (230)
T d1g8sa_ 143 KVDVIYEDVA-QPNQAEILIKNAKWFLKKGGYGMIAI 178 (230)
T ss_dssp CEEEEEECCC-STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEeecccc-chHHHHHHHHHHHHhcccCceEEEEe
Confidence 8776655554 44477889999999999999999975
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.22 E-value=4e-11 Score=106.86 Aligned_cols=98 Identities=18% Similarity=0.256 Sum_probs=77.5
Q ss_pred eEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC--CCCCccceEEeccccc
Q 036725 208 TALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP--YPSRAFDMAHCSRCLI 280 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp--~~d~sFDlV~~~~~l~ 280 (392)
.|||||||+|.++..+++. .++|+|+++..+..+ .+.+.+.+++++.+..++. .+. ++++++|.|++.+. .
T Consensus 34 lvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a-~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP-d 111 (204)
T d1yzha1 34 IHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYA-LDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS-D 111 (204)
T ss_dssp EEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHH-HHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC-C
T ss_pred eEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHH-HHhhhhhccccceeeecCHHHHhhhccCCceehhccccc-c
Confidence 7999999999999999876 689999887655554 3455667788887777765 443 78999999998753 4
Q ss_pred ccccCh--------HHHHHHHHHhccCCeEEEEEc
Q 036725 281 PWSAND--------GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 281 ~~~~d~--------~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+|.... ..+|.++.|+|||||.|.+.+
T Consensus 112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 676432 589999999999999999865
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.21 E-value=3.1e-11 Score=111.92 Aligned_cols=111 Identities=17% Similarity=0.161 Sum_probs=85.3
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccccCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTIKLP 264 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~~lp 264 (392)
-+..++..+...++. +|||+|||+|.++..|++. .++++|+++..+..+.. .....++ ..+.....+....
T Consensus 91 d~~~Ii~~l~i~pG~--~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~-~~~~~g~~~~v~~~~~d~~~~ 167 (266)
T d1o54a_ 91 DSSFIAMMLDVKEGD--RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAES-NLTKWGLIERVTIKVRDISEG 167 (266)
T ss_dssp HHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH-HHHHTTCGGGEEEECCCGGGC
T ss_pred HHHHHHHhhCCCCCC--EEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH-HHHHhccccCcEEEecccccc
Confidence 345667777777776 9999999999999999864 68999888766555544 3344454 5666777776667
Q ss_pred CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 265 YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++...||.|+. +.. ++..++.++.++|||||.+++..|..
T Consensus 168 ~~~~~~D~V~~-----d~p-~p~~~l~~~~~~LKpGG~lv~~~P~~ 207 (266)
T d1o54a_ 168 FDEKDVDALFL-----DVP-DPWNYIDKCWEALKGGGRFATVCPTT 207 (266)
T ss_dssp CSCCSEEEEEE-----CCS-CGGGTHHHHHHHEEEEEEEEEEESSH
T ss_pred ccccceeeeEe-----cCC-CHHHHHHHHHhhcCCCCEEEEEeCcc
Confidence 77889999975 333 77789999999999999999987654
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=3.2e-11 Score=109.09 Aligned_cols=108 Identities=18% Similarity=0.160 Sum_probs=77.9
Q ss_pred HHHHHHhhCC--CCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHH----cCCCcEEEEec
Q 036725 191 YIEELASVIP--MDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALE----RGVPAVIGVLG 259 (392)
Q Consensus 191 ~i~~l~~~l~--~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~----rg~~~~~~~~~ 259 (392)
....+++.+. ..++. +|||||||+|+.++.|++. .|+++|+++..+..+.....+. .+...+.+..+
T Consensus 62 ~~a~~le~L~~~l~~g~--~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~g 139 (224)
T d1i1na_ 62 MHAYALELLFDQLHEGA--KALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG 139 (224)
T ss_dssp HHHHHHHHTTTTSCTTC--EEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES
T ss_pred HHHHHHHHHhhccCCCC--eEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEe
Confidence 4456666663 34454 9999999999999888764 6999998876555544433322 12345666666
Q ss_pred cc-cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 260 TI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 260 ~~-~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+. ..+.+++.||.|++..++.+.+ .++.+.|||||++++..
T Consensus 140 D~~~~~~~~~~fD~I~~~~~~~~ip-------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 140 DGRMGYAEEAPYDAIHVGAAAPVVP-------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp CGGGCCGGGCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred ecccccchhhhhhhhhhhcchhhcC-------HHHHhhcCCCcEEEEEE
Confidence 65 6666788999999998776554 56889999999999965
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=4.6e-12 Score=117.23 Aligned_cols=118 Identities=20% Similarity=0.184 Sum_probs=76.3
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC----------------
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV---------------- 251 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~---------------- 251 (392)
.+..+.+.+........+|||||||+|.+...++.. +|+++|+++.++..++.....+.+.
T Consensus 40 ~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 119 (263)
T d2g72a1 40 KLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGK 119 (263)
T ss_dssp HHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccc
Confidence 345555554433333459999999999887655543 6999988887666554322111110
Q ss_pred ------------CcEE--EEeccc------cCCCCCCccceEEecccccccccC---hHHHHHHHHHhccCCeEEEEEcC
Q 036725 252 ------------PAVI--GVLGTI------KLPYPSRAFDMAHCSRCLIPWSAN---DGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 252 ------------~~~~--~~~~~~------~lp~~d~sFDlV~~~~~l~~~~~d---~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
..+. ...+.. ..+++.++||+|++.+++++...+ ...+++++.++|||||+|++.++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~ 199 (263)
T d2g72a1 120 GECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 199 (263)
T ss_dssp CCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 0011 111111 223556789999999999877644 36899999999999999999764
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.16 E-value=4.1e-11 Score=107.19 Aligned_cols=101 Identities=13% Similarity=0.062 Sum_probs=70.6
Q ss_pred CCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCC---cc
Q 036725 199 IPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSR---AF 270 (392)
Q Consensus 199 l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~---sF 270 (392)
++..++. +|||+|||+|..+..|++. .|+++|+++.++..+.. .+..+ +++..+..+. ..+.... .+
T Consensus 52 l~lkpg~--~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~-~a~~~--~ni~~i~~d~~~~~~~~~~~~~v 126 (209)
T d1nt2a_ 52 LKLRGDE--RVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLE-LVRER--NNIIPLLFDASKPWKYSGIVEKV 126 (209)
T ss_dssp CCCCSSC--EEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHH-HHHHC--SSEEEECSCTTCGGGTTTTCCCE
T ss_pred CCCCCCC--EEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHH-Hhhcc--CCceEEEeeccCccccccccceE
Confidence 4555555 9999999999999988874 59999998877666443 44444 3556666665 3333333 45
Q ss_pred ceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 271 DMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 271 DlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
|+|++. +.+.. +...++.++.|+|||||++++..
T Consensus 127 d~v~~~--~~~~~-~~~~~l~~~~~~LkpgG~l~i~~ 160 (209)
T d1nt2a_ 127 DLIYQD--IAQKN-QIEILKANAEFFLKEKGEVVIMV 160 (209)
T ss_dssp EEEEEC--CCSTT-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEec--ccChh-hHHHHHHHHHHHhccCCeEEEEE
Confidence 555442 32333 66889999999999999999874
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=9.2e-11 Score=110.80 Aligned_cols=114 Identities=15% Similarity=0.125 Sum_probs=79.8
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLP 264 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp 264 (392)
+.|.+.+.+.....++. +|||||||+|.++..++++ .|+++|.++... .+....++......+.++.++. +++
T Consensus 21 ~~y~~ai~~~~~~~~~~--~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~ 97 (311)
T d2fyta1 21 ESYRDFIYQNPHIFKDK--VVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVH 97 (311)
T ss_dssp HHHHHHHHHCGGGTTTC--EEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSC
T ss_pred HHHHHHHHhccccCCcC--EEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhc
Confidence 45666666554433443 8999999999999988886 689999987532 2233233333345666666665 888
Q ss_pred CCCCccceEEeccccccccc--ChHHHHHHHHHhccCCeEEEE
Q 036725 265 YPSRAFDMAHCSRCLIPWSA--NDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~~--d~~~~L~ei~RvLkPGG~lvl 305 (392)
+++++||+|++....+.... ....++....|+|||||+++-
T Consensus 98 ~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 98 LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred CccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence 88999999998754433332 236788888999999999974
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.15 E-value=5.2e-11 Score=113.52 Aligned_cols=112 Identities=16% Similarity=0.185 Sum_probs=78.0
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLP 264 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp 264 (392)
.|.+.|.+.....++. +|||||||+|.++..++++ .|+++|.++ +. ....+.+++.+. ..+.++.++. .++
T Consensus 25 ~y~~aI~~~~~~~~~~--~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~-~~a~~~~~~~~~~~~i~~i~~~~~~l~ 100 (328)
T d1g6q1_ 25 SYRNAIIQNKDLFKDK--IVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-II-EMAKELVELNGFSDKITLLRGKLEDVH 100 (328)
T ss_dssp HHHHHHHHHHHHHTTC--EEEEETCTTSHHHHHHHHTCCSEEEEEESST-HH-HHHHHHHHHTTCTTTEEEEESCTTTSC
T ss_pred HHHHHHHhccccCCcC--EEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HH-HHHHHHHHHhCccccceEEEeehhhcc
Confidence 3444444433222343 8999999999999988876 689999875 33 333444555554 4566666665 889
Q ss_pred CCCCccceEEecccccccc--cChHHHHHHHHHhccCCeEEEE
Q 036725 265 YPSRAFDMAHCSRCLIPWS--ANDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~--~d~~~~L~ei~RvLkPGG~lvl 305 (392)
+++++||+|++..+..... .....++.++.|+|||||.++-
T Consensus 101 ~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 101 LPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp CSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred CcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEe
Confidence 9999999999875543322 2457889999999999999863
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.12 E-value=9.7e-11 Score=111.05 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=73.1
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-cCCCCCCccceEEecccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI-KLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~-~lp~~d~sFDlV~~~~~l~~ 281 (392)
++|||||||+|.++..++++ .|+++|.++. . ....+.++..+. ..+.++.++. .++++.++||+|++....+.
T Consensus 35 ~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~ 112 (316)
T d1oria_ 35 KVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-S-DYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC 112 (316)
T ss_dssp CEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-H-HHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred CEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-H-hhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeee
Confidence 38999999999999988876 5899998863 3 333445555554 4466666665 88898999999998755433
Q ss_pred cc--cChHHHHHHHHHhccCCeEEEE
Q 036725 282 WS--ANDGMYMMEIDRVLRPGGYWVL 305 (392)
Q Consensus 282 ~~--~d~~~~L~ei~RvLkPGG~lvl 305 (392)
.. .....++.++.|+|||||.++-
T Consensus 113 l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 113 LFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp BTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 22 2347899999999999999874
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=3.5e-11 Score=114.91 Aligned_cols=120 Identities=13% Similarity=0.037 Sum_probs=84.7
Q ss_pred CCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHH--H----cC--C
Q 036725 184 FPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFAL--E----RG--V 251 (392)
Q Consensus 184 f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~--~----rg--~ 251 (392)
+.......+..+++.+...++. +|||||||+|.++..++.. .++|+|+++.++..+..+... . .| .
T Consensus 132 ~~e~~~~~~~~~~~~~~l~~~~--~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~ 209 (328)
T d1nw3a_ 132 YGETSFDLVAQMIDEIKMTDDD--LFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKH 209 (328)
T ss_dssp CCCCCHHHHHHHHHHSCCCTTC--EEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred hhhhHHHHHHHHHHHcCCCCCC--EEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccC
Confidence 3333455677888888876665 8999999999999888754 689999987655544332221 1 12 3
Q ss_pred CcEEEEeccc-cCCCCCCcc--ceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 252 PAVIGVLGTI-KLPYPSRAF--DMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 252 ~~~~~~~~~~-~lp~~d~sF--DlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..+.++.++. .+++.+..| |+|+++ .+.++ ++....|.|+.|+|||||.++...
T Consensus 210 ~~i~~~~gd~~~~~~~~~~~~advi~~~-~~~f~-~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 210 AEYTLERGDFLSEEWRERIANTSVIFVN-NFAFG-PEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCSEEEEC-CTTTC-HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred CceEEEECcccccccccccCcceEEEEc-ceecc-hHHHHHHHHHHHhCCCCcEEEEec
Confidence 4566777776 777766666 566664 34344 377899999999999999998854
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.09 E-value=8.3e-11 Score=106.47 Aligned_cols=103 Identities=17% Similarity=0.267 Sum_probs=72.8
Q ss_pred hhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc----cCCCCC
Q 036725 197 SVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI----KLPYPS 267 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~----~lp~~d 267 (392)
+.++..+|. +|||+|||+|.++..|++. .|+++|+++.++..+. +.++.+ ++...+..+. ..+...
T Consensus 67 ~~l~i~pG~--~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~-~~a~~~--~~~~~i~~d~~~~~~~~~~~ 141 (227)
T d1g8aa_ 67 KNFPIKPGK--SVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV-PIVEER--RNIVPILGDATKPEEYRALV 141 (227)
T ss_dssp CCCCCCTTC--EEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHH-HHHSSC--TTEEEEECCTTCGGGGTTTC
T ss_pred cccccCCCC--EEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHH-HHHHhc--CCceEEEEECCCcccccccc
Confidence 344555665 9999999999999999975 6999999887655543 233333 3344444443 234455
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..+|+|++.. +..++...++.++.+.|||||+++++.
T Consensus 142 ~~vD~i~~d~---~~~~~~~~~l~~~~~~LkpgG~lvi~~ 178 (227)
T d1g8aa_ 142 PKVDVIFEDV---AQPTQAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp CCEEEEEECC---CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cceEEEEEEc---cccchHHHHHHHHHHhcccCCeEEEEE
Confidence 7899998752 233366789999999999999999974
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.07 E-value=2.1e-10 Score=103.55 Aligned_cols=105 Identities=15% Similarity=0.165 Sum_probs=75.3
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCC-CC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPY-PS 267 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~-~d 267 (392)
....+++.+...++. +|||||||+|++++.|++. .|+++|+++.....+... .....++.++.++....+ +.
T Consensus 58 ~~a~ml~~L~l~~g~--~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~---~~~~~nv~~~~~d~~~g~~~~ 132 (224)
T d1vbfa_ 58 LGIFMLDELDLHKGQ--KVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKL---LSYYNNIKLILGDGTLGYEEE 132 (224)
T ss_dssp HHHHHHHHTTCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHH---HTTCSSEEEEESCGGGCCGGG
T ss_pred hHHHHHHHhhhcccc--eEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHH---HhcccccccccCchhhcchhh
Confidence 445567777777776 9999999999999988876 788998766433333221 123467777777764433 35
Q ss_pred CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 268 RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+.||.|++..+..+.+ ..+.+.|||||++++..
T Consensus 133 ~pfD~Iiv~~a~~~ip-------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 133 KPYDRVVVWATAPTLL-------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp CCEEEEEESSBBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred hhHHHHHhhcchhhhh-------HHHHHhcCCCCEEEEEE
Confidence 7899999987775544 55678899999999853
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=7.1e-10 Score=102.90 Aligned_cols=118 Identities=16% Similarity=0.182 Sum_probs=85.8
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK 262 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~ 262 (392)
..+.+++..+..+...+ .+|||+|||+|..+..++.. .++++|+++..+..++ +.+...++.++.++.++..
T Consensus 93 eTE~lv~~~l~~~~~~~---~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~-~Na~~~~~~~v~~~~~d~~ 168 (274)
T d2b3ta1 93 DTECLVEQALARLPEQP---CRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQ-RNAQHLAIKNIHILQSDWF 168 (274)
T ss_dssp THHHHHHHHHHHSCSSC---CEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHH-HHHHHHTCCSEEEECCSTT
T ss_pred chhhhhhhHhhhhcccc---cceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHH-HHHHHhCcccceeeecccc
Confidence 34567777766655322 37999999999999988764 7899998886665554 3556667777788888875
Q ss_pred CCCCCCccceEEecccccccc------------c------------ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 263 LPYPSRAFDMAHCSRCLIPWS------------A------------NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~------------~------------d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
-++++++||+|+|+.-.++-. + ....++.+..+.|+|||.+++...
T Consensus 169 ~~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig 238 (274)
T d2b3ta1 169 SALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 238 (274)
T ss_dssp GGGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred cccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 566788999999984432211 0 013688999999999999999753
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.01 E-value=1.1e-09 Score=98.19 Aligned_cols=107 Identities=20% Similarity=0.205 Sum_probs=80.4
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYP 266 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~ 266 (392)
....+++.+...++. +|||||||+|+.++.|+.. .|+++|..+. ..+...+..++.+..++.+..++. ....+
T Consensus 66 ~~a~ml~~L~l~~g~--~VLeIGsGsGY~taila~l~g~~V~~ie~~~~-l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~ 142 (215)
T d1jg1a_ 66 MVAIMLEIANLKPGM--NILEVGTGSGWNAALISEIVKTDVYTIERIPE-LVEFAKRNLERAGVKNVHVILGDGSKGFPP 142 (215)
T ss_dssp HHHHHHHHHTCCTTC--CEEEECCTTSHHHHHHHHHHCSCEEEEESCHH-HHHHHHHHHHHTTCCSEEEEESCGGGCCGG
T ss_pred hHHHHHHhhccCccc--eEEEecCCCChhHHHHHHhhCceeEEEeccHH-HHHHHHHHHHHcCCceeEEEECccccCCcc
Confidence 456677777776776 8999999999999988864 5999988763 344444555667888888888887 33344
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+.||.|++..+..+.+ ..+...|||||++++..
T Consensus 143 ~~pfD~Iiv~~a~~~ip-------~~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 143 KAPYDVIIVTAGAPKIP-------EPLIEQLKIGGKLIIPV 176 (215)
T ss_dssp GCCEEEEEECSBBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred cCcceeEEeecccccCC-------HHHHHhcCCCCEEEEEE
Confidence 78899999987765544 44567799999999853
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=4.3e-10 Score=106.86 Aligned_cols=111 Identities=21% Similarity=0.202 Sum_probs=75.7
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHH----------cCCCcEEE
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALE----------RGVPAVIG 256 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~----------rg~~~~~~ 256 (392)
+..++..+...+|. +|||+|||+|+++..|++. .|+++|+++..+..+..++... ....++.+
T Consensus 87 ~~~Il~~l~i~pG~--rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~ 164 (324)
T d2b25a1 87 INMILSMMDINPGD--TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF 164 (324)
T ss_dssp HHHHHHHHTCCTTC--EEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred HHHHHHHhCCCCCC--EEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeE
Confidence 34555666666776 9999999999999999875 6999988776555554443321 11245666
Q ss_pred Eeccc-cC--CCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 257 VLGTI-KL--PYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 257 ~~~~~-~l--p~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
..++. .. .+++.+||.|+.. +. ++..++.++.++|||||.|++..|..
T Consensus 165 ~~~di~~~~~~~~~~~fD~V~LD-~p-----~P~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 165 IHKDISGATEDIKSLTFDAVALD-ML-----NPHVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp EESCTTCCC-------EEEEEEC-SS-----STTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred EecchhhcccccCCCCcceEeec-Cc-----CHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 66665 22 3457889999863 22 45568999999999999999988766
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.89 E-value=2.1e-09 Score=96.83 Aligned_cols=108 Identities=14% Similarity=0.171 Sum_probs=74.1
Q ss_pred HHHHHHhhC--CCCCCCcceEEEECCcCchHHHHHhhC----------CcEEEeCCccChHHHHHHHHH----HcCCCcE
Q 036725 191 YIEELASVI--PMDSGMVRTALDTGCGVASWGAYLFKK----------NVITMSFAPRDSHEAQVQFAL----ERGVPAV 254 (392)
Q Consensus 191 ~i~~l~~~l--~~~~~~~~~VLDiGCG~G~~~~~L~~~----------~v~~vd~s~~d~~~a~~~~a~----~rg~~~~ 254 (392)
....+++.+ ...++. +|||||||+|++++.|++. +|+++|..+.....+..+... ..+..++
T Consensus 66 ~~a~~l~~L~~~l~~g~--~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv 143 (223)
T d1r18a_ 66 MHAFALEYLRDHLKPGA--RILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL 143 (223)
T ss_dssp HHHHHHHHTTTTCCTTC--EEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred hHHHHHHHHhhccCCCC--eEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEE
Confidence 345566665 334444 9999999999999888764 488998876544443332211 1244567
Q ss_pred EEEeccc-cCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 255 IGVLGTI-KLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 255 ~~~~~~~-~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+..++. ....+.+.||.|++..++.+.+ ..+.+.|||||++++..
T Consensus 144 ~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p-------~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 144 LIVEGDGRKGYPPNAPYNAIHVGAAAPDTP-------TELINQLASGGRLIVPV 190 (223)
T ss_dssp EEEESCGGGCCGGGCSEEEEEECSCBSSCC-------HHHHHTEEEEEEEEEEE
T ss_pred EEEecccccccccccceeeEEEEeechhch-------HHHHHhcCCCcEEEEEE
Confidence 7777776 4444577899999987775544 45778999999999854
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.88 E-value=1.5e-09 Score=105.89 Aligned_cols=121 Identities=10% Similarity=0.083 Sum_probs=80.8
Q ss_pred CCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHH------cCC-
Q 036725 183 QFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALE------RGV- 251 (392)
Q Consensus 183 ~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~------rg~- 251 (392)
.++...-..+.++++.+...++. ++||||||+|..+..++.. .++|+|+++.++..+..+.... .+.
T Consensus 196 vYGEl~~~~i~~Il~~l~Lkpgd--~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~ 273 (406)
T d1u2za_ 196 VYGELLPNFLSDVYQQCQLKKGD--TFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR 273 (406)
T ss_dssp CCCCBCHHHHHHHHHHTTCCTTC--EEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred ccccCCHHHHHHHHHHhCCCCCC--EEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccc
Confidence 34455566788888888877776 8999999999999988865 5899999887666555433321 111
Q ss_pred --CcEEEEeccc-cCCCCC---CccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 252 --PAVIGVLGTI-KLPYPS---RAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 252 --~~~~~~~~~~-~lp~~d---~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.......++. ..++.+ ..+|+|+++. +. +.++....|.|+.|+|||||.++.+.
T Consensus 274 ~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn-~~-f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 274 LNNVEFSLKKSFVDNNRVAELIPQCDVILVNN-FL-FDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp CCCEEEEESSCSTTCHHHHHHGGGCSEEEECC-TT-CCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred cccceeeeeechhhccccccccccceEEEEec-cc-CchHHHHHHHHHHHhcCCCcEEEEec
Confidence 1222222222 222111 2467887653 33 34477899999999999999998864
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.76 E-value=3.6e-08 Score=90.57 Aligned_cols=122 Identities=10% Similarity=-0.020 Sum_probs=83.8
Q ss_pred EEecCCCCCCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC
Q 036725 175 FRFPGGGTQFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV 251 (392)
Q Consensus 175 ~~fp~~g~~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~ 251 (392)
+.+.-..+.|..+......++.+.+. ++. +|||+|||+|.++..++++ .|+++|+++..+.. ..+.++..++
T Consensus 81 ~~~d~~~~~f~~~~~~er~ri~~~~~--~g~--~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~-~~~N~~~n~l 155 (260)
T d2frna1 81 YKLDVAKIMFSPANVKERVRMAKVAK--PDE--LVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKF-LVENIHLNKV 155 (260)
T ss_dssp EEEETTTSCCCGGGHHHHHHHHHHCC--TTC--EEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHH-HHHHHHHTTC
T ss_pred EEeccccccEecCCHHHHHHHHhhcC--Ccc--EEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHH-HHHHHHHhCC
Confidence 34444455566555555566777664 444 8999999999999988865 68999998854433 4445566666
Q ss_pred Cc-EEEEeccccCCCCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 252 PA-VIGVLGTIKLPYPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 252 ~~-~~~~~~~~~lp~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.. +.+..++...-.+.+.||.|++.. +.....++.++.++|++||++.+.
T Consensus 156 ~~~v~~~~~D~~~~~~~~~~D~Ii~~~-----p~~~~~~l~~a~~~l~~gG~lh~~ 206 (260)
T d2frna1 156 EDRMSAYNMDNRDFPGENIADRILMGY-----VVRTHEFIPKALSIAKDGAIIHYH 206 (260)
T ss_dssp TTTEEEECSCTTTCCCCSCEEEEEECC-----CSSGGGGHHHHHHHEEEEEEEEEE
T ss_pred CceEEEEEcchHHhccCCCCCEEEECC-----CCchHHHHHHHHhhcCCCCEEEEE
Confidence 44 666667763333468899998752 123456788899999999998764
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.73 E-value=2e-08 Score=91.42 Aligned_cols=106 Identities=14% Similarity=0.183 Sum_probs=76.9
Q ss_pred HHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCC
Q 036725 191 YIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYP 266 (392)
Q Consensus 191 ~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~ 266 (392)
..+.+++.++... ..++|||||||+|.++..++++ +++..|+ .+ .+ ........+.++.++...+.|
T Consensus 68 ~~~~l~~~~~~f~-~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-----p~-vi--~~~~~~~ri~~~~gd~~~~~p 138 (244)
T d1fp1d2 68 EMKRMLEIYTGFE-GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-----PQ-VI--ENAPPLSGIEHVGGDMFASVP 138 (244)
T ss_dssp HHHHHHHHCCTTT-TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-----HH-HH--TTCCCCTTEEEEECCTTTCCC
T ss_pred HHHHHHHhccccc-CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-----hh-hh--hccCCCCCeEEecCCcccccc
Confidence 4456666666322 3459999999999999999987 5566655 21 11 112234667778888755555
Q ss_pred CCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 267 SRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. .|++++.+++|+|.++. ..+|+++++.|+|||.+++..
T Consensus 139 ~--~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e 178 (244)
T d1fp1d2 139 Q--GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVE 178 (244)
T ss_dssp C--EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c--ceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3 49999999999998444 589999999999999999964
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.66 E-value=8e-09 Score=90.73 Aligned_cols=42 Identities=17% Similarity=0.332 Sum_probs=35.8
Q ss_pred CCCCccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEE
Q 036725 265 YPSRAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~ 306 (392)
.+.+.||+|+|.++|+.+.++. .++++.+.+.|+|||+|++-
T Consensus 128 ~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 128 NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3468899999999998877444 68999999999999998874
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.65 E-value=7.6e-08 Score=91.07 Aligned_cols=122 Identities=17% Similarity=0.086 Sum_probs=80.9
Q ss_pred CCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEec
Q 036725 184 FPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLG 259 (392)
Q Consensus 184 f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~ 259 (392)
+..........+.+.+. ++. +|||+|||+|.++..++.. .|+++|+++..+..+. +.+...|+ ..+.+..+
T Consensus 128 ~flDqr~~r~~~~~~~~--~g~--~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~-~N~~~ngl~~~~~~~~~ 202 (324)
T d2as0a2 128 FFLDQRENRLALEKWVQ--PGD--RVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAK-ENAKLNGVEDRMKFIVG 202 (324)
T ss_dssp CCSTTHHHHHHHGGGCC--TTC--EEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHHHHTTCGGGEEEEES
T ss_pred cccchhhHHHHHHhhcC--CCC--eeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHH-HHHHHcCCCccceeeec
Confidence 33344444555555543 343 8999999999999988876 6999999886555433 35555676 45556666
Q ss_pred cc-----cCCCCCCccceEEecccccccc-c-------ChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 260 TI-----KLPYPSRAFDMAHCSRCLIPWS-A-------NDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 260 ~~-----~lp~~d~sFDlV~~~~~l~~~~-~-------d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+. .++....+||+|++..-...-. . +...++..+.++|||||+|++++...
T Consensus 203 d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 203 SAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp CHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred hhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 54 2344578999999863221111 0 12357888999999999999986444
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.62 E-value=5e-08 Score=92.12 Aligned_cols=103 Identities=15% Similarity=0.073 Sum_probs=74.2
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-c----CCCCCCccceEEecccc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-K----LPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~----lp~~d~sFDlV~~~~~l 279 (392)
++|||++||+|.++..++.. .|+++|+++..+..+. +.++..|+..+.++..+. + ++...++||+|++..-.
T Consensus 147 ~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~-~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~ 225 (318)
T d1wxxa2 147 ERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAE-ENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPPA 225 (318)
T ss_dssp EEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHH-HHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred CeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHH-HHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCCc
Confidence 49999999999999988755 8999999887666544 455567777666666654 2 34456799999986321
Q ss_pred ccc--------ccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 280 IPW--------SANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 280 ~~~--------~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
... ..+...++..+.++|||||.+++++...
T Consensus 226 ~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 226 FAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp SCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 111 1112368889999999999999986543
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.60 E-value=2.9e-08 Score=85.37 Aligned_cols=98 Identities=17% Similarity=0.216 Sum_probs=63.5
Q ss_pred eEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc----cCCCCCCccceEEecccccc
Q 036725 208 TALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI----KLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~----~lp~~d~sFDlV~~~~~l~~ 281 (392)
+|||+|||+|.++...+.+ .++++|.++..+..+ .+.++..++.......... .......+||+|++.- +
T Consensus 44 ~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~-~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP---P 119 (171)
T d1ws6a1 44 RFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLL-KENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP---P 119 (171)
T ss_dssp EEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHH-HHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC---C
T ss_pred eEEEeccccchhhhhhhhccchhhhcccCHHHHhhh-hHHHHhhccccceeeeehhcccccccccCCccceeEEcc---c
Confidence 8999999999999988877 677888776544433 3344455665433333221 1234567899999864 3
Q ss_pred cccChHHHHHHHH--HhccCCeEEEEEcCC
Q 036725 282 WSANDGMYMMEID--RVLRPGGYWVLSGPL 309 (392)
Q Consensus 282 ~~~d~~~~L~ei~--RvLkPGG~lvl~~p~ 309 (392)
|..+....+.++. .+|+|||++++..+.
T Consensus 120 Y~~~~~~~l~~l~~~~ll~~~g~ivie~~~ 149 (171)
T d1ws6a1 120 YAMDLAALFGELLASGLVEAGGLYVLQHPK 149 (171)
T ss_dssp TTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred cccCHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence 3334444444443 479999999997543
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=4.9e-07 Score=80.66 Aligned_cols=108 Identities=20% Similarity=0.180 Sum_probs=76.4
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI- 261 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~- 261 (392)
..++..+++... .++|||||||+|+.+.++++. +++++|.++.....+ .+...+.|+ ..+....++.
T Consensus 48 g~lL~~L~~~~~-----~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A-~~~~~~ag~~~~i~~~~Gda~ 121 (219)
T d2avda1 48 AQLLANLARLIQ-----AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELG-RPLWRQAEAEHKIDLRLKPAL 121 (219)
T ss_dssp HHHHHHHHHHTT-----CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHH-HHHHHHTTCTTTEEEEESCHH
T ss_pred HHHHHHHHHccC-----CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHH-HHHHHhcCccceEEEEEeehh
Confidence 445566665543 238999999999999999875 789999987544443 334445554 4466666654
Q ss_pred -cCC-----CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 262 -KLP-----YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 262 -~lp-----~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.++ ...++||+|+.. +.......++..+.+.|+|||++++.
T Consensus 122 e~l~~~~~~~~~~~fD~ifiD----~dk~~y~~~~~~~~~lL~~GGvii~D 168 (219)
T d2avda1 122 ETLDELLAAGEAGTFDVAVVD----ADKENCSAYYERCLQLLRPGGILAVL 168 (219)
T ss_dssp HHHHHHHHTTCTTCEEEEEEC----SCSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcchhhhhhcccCCccEEEEe----CCHHHHHHHHHHHHHHhcCCcEEEEe
Confidence 222 246789999976 33445577889999999999999996
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.53 E-value=5.8e-08 Score=81.70 Aligned_cols=98 Identities=9% Similarity=0.043 Sum_probs=66.4
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc--cCCCCCCccceEEeccccc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI--KLPYPSRAFDMAHCSRCLI 280 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~--~lp~~d~sFDlV~~~~~l~ 280 (392)
.+|||+|||+|.++...+.+ +|+++|.++..+.... +.+...+. ....++.++. .+....++||+|++..
T Consensus 16 ~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~-~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DP--- 91 (152)
T d2esra1 16 GRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQ-DNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDP--- 91 (152)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHH-HHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECC---
T ss_pred CeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhh-hhhhhcccccchhhhcccccccccccccccceeEech---
Confidence 38999999999999877766 6899988775443333 34444454 3366666665 3455678999999863
Q ss_pred ccccCh-HHHHHHHH--HhccCCeEEEEEcC
Q 036725 281 PWSAND-GMYMMEID--RVLRPGGYWVLSGP 308 (392)
Q Consensus 281 ~~~~d~-~~~L~ei~--RvLkPGG~lvl~~p 308 (392)
++.... ...+..+. ++|+|||.+++..+
T Consensus 92 Py~~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 92 PYAKETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp SSHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hhccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 333222 45555553 57999999999754
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.48 E-value=2.6e-07 Score=83.67 Aligned_cols=105 Identities=14% Similarity=0.168 Sum_probs=75.2
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPS 267 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d 267 (392)
...++..++... ..++|||||||+|.++..++++ ++++.|+... + +.....+.+.++.++...++|.
T Consensus 69 ~~~~~~~~~~~~-~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-------~~~~~~~r~~~~~~d~~~~~P~ 139 (243)
T d1kyza2 69 MKKILETYTGFE-GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-------EDAPSYPGVEHVGGDMFVSIPK 139 (243)
T ss_dssp HHHHHHHCCTTS-SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-------TTCCCCTTEEEEECCTTTCCCC
T ss_pred HHHHHHhccccc-CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-------hhcccCCceEEecccccccCCC
Confidence 344555554322 2458999999999999999987 6777777442 1 1122235677788877556654
Q ss_pred CccceEEecccccccccCh-HHHHHHHHHhccCCeEEEEEc
Q 036725 268 RAFDMAHCSRCLIPWSAND-GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d~-~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.|.++..++++.|.++. ..+|+++++.|+|||.+++..
T Consensus 140 --ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d 178 (243)
T d1kyza2 140 --ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAE 178 (243)
T ss_dssp --CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEE
T ss_pred --cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 47778888998887433 689999999999999998864
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.40 E-value=1.1e-06 Score=82.75 Aligned_cols=103 Identities=11% Similarity=0.007 Sum_probs=71.3
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC--CcEEEEeccc--cC---CCCCCccceEEec
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV--PAVIGVLGTI--KL---PYPSRAFDMAHCS 276 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~--~~~~~~~~~~--~l---p~~d~sFDlV~~~ 276 (392)
++|||+.||+|.++..++.. .|+++|+++..+..+..+ +..+++ ..+.++.++. .+ .-..++||+|++.
T Consensus 146 ~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N-~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~D 224 (317)
T d2b78a2 146 KTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAH-FEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIID 224 (317)
T ss_dssp CEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHH-HHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHH-HHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEEc
Confidence 38999999999999887764 689999998766655443 344444 3566666664 22 2245789999985
Q ss_pred ccc--------cccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 277 RCL--------IPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 277 ~~l--------~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
--. .....+...++..+.++|+|||++++++...
T Consensus 225 PP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 225 PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 221 0111123468899999999999999987544
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.39 E-value=1.8e-07 Score=84.92 Aligned_cols=92 Identities=15% Similarity=0.203 Sum_probs=68.5
Q ss_pred cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecccccc
Q 036725 206 VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSRCLIP 281 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~~l~~ 281 (392)
.++|||||||+|.++..++++ ++++.|+. + .++.+ ...+.+.++.++...+.+ .+|++++.+++|+
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-----~-vi~~~--~~~~rv~~~~gD~f~~~p--~aD~~~l~~vLHd 150 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-----Q-VVENL--SGSNNLTYVGGDMFTSIP--NADAVLLKYILHN 150 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-----H-HHTTC--CCBTTEEEEECCTTTCCC--CCSEEEEESCGGG
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-----H-HHHhC--cccCceEEEecCcccCCC--CCcEEEEEeeccc
Confidence 348999999999999999887 56667652 1 12111 223567778888744544 4799999999999
Q ss_pred cccCh-HHHHHHHHHhccCC---eEEEEEc
Q 036725 282 WSAND-GMYMMEIDRVLRPG---GYWVLSG 307 (392)
Q Consensus 282 ~~~d~-~~~L~ei~RvLkPG---G~lvl~~ 307 (392)
|.++. ..+|+.+++.|+|| |.+++..
T Consensus 151 w~d~~~~~iL~~~~~al~pgg~~~~lli~e 180 (244)
T d1fp2a2 151 WTDKDCLRILKKCKEAVTNDGKRGKVTIID 180 (244)
T ss_dssp SCHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred CChHHHHHHHHHHHHHcCcccCCcEEEEEE
Confidence 98544 58999999999998 6777753
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.35 E-value=1.7e-06 Score=74.80 Aligned_cols=129 Identities=11% Similarity=0.056 Sum_probs=79.9
Q ss_pred CCeEEecCCCCCCCccHHHHHHHHHhhCCC-CCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHH
Q 036725 172 GNVFRFPGGGTQFPHGADAYIEELASVIPM-DSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFAL 247 (392)
Q Consensus 172 ~~~~~fp~~g~~f~~~~~~~i~~l~~~l~~-~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~ 247 (392)
|..+..|.+.. ..+..+...+.+...+.. ..+. +|||++||+|.++...+.+ .|+.+|.+...+.... +.+.
T Consensus 12 g~~l~~~~~~~-~RPt~~~vre~lfn~l~~~~~~~--~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k-~N~~ 87 (183)
T d2fpoa1 12 GRKLPVPDSPG-LRPTTDRVRETLFNWLAPVIVDA--QCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLI-KNLA 87 (183)
T ss_dssp TCEEECCCC-------CHHHHHHHHHHHHHHHTTC--EEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHH-HHHH
T ss_pred CCEecCCCCCC-cCcCcHHHHHHHHhhhhcccchh--hhhhhhccccceeeeEEecCcceeEEEEEeechhhHHH-HHHh
Confidence 44555555432 223334444555555432 1333 8999999999999988877 6889988775444333 3344
Q ss_pred HcCCCcEEEEeccc--cCCCCCCccceEEecccccccccC-hHHHHHHHHH--hccCCeEEEEEc
Q 036725 248 ERGVPAVIGVLGTI--KLPYPSRAFDMAHCSRCLIPWSAN-DGMYMMEIDR--VLRPGGYWVLSG 307 (392)
Q Consensus 248 ~rg~~~~~~~~~~~--~lp~~d~sFDlV~~~~~l~~~~~d-~~~~L~ei~R--vLkPGG~lvl~~ 307 (392)
..+.....++..+. .+......||+|++.. +|... ...++..+.+ +|+++|++++..
T Consensus 88 ~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DP---PY~~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 88 TLKAGNARVVNSNAMSFLAQKGTPHNIVFVDP---PFRRGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp HTTCCSEEEECSCHHHHHSSCCCCEEEEEECC---SSSTTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hccccceeeeeecccccccccccccCEEEEcC---ccccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 45566666666654 3444578899999874 34433 3566666654 699999999964
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.34 E-value=4.8e-07 Score=80.38 Aligned_cols=108 Identities=18% Similarity=0.253 Sum_probs=72.6
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI- 261 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~- 261 (392)
..++..+++... .++|||||||+|..+..|++. +++++|+++.....+. +.....|+ ..+.+..++.
T Consensus 45 G~lL~~lv~~~k-----pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~-~~~~~~gl~~~i~l~~Gd~~ 118 (214)
T d2cl5a1 45 GQIMDAVIREYS-----PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQ-QMLNFAGLQDKVTILNGASQ 118 (214)
T ss_dssp HHHHHHHHHHHC-----CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHH-HHHHHHTCGGGEEEEESCHH
T ss_pred HHHHHHHHHhhC-----CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHH-HHHHHcCCCccceeeecccc
Confidence 345555555543 238999999999999999874 6899998775444433 34445565 4466666664
Q ss_pred -cCC-----CCCCccceEEecccccccccCh--HHHHHHHHHhccCCeEEEEE
Q 036725 262 -KLP-----YPSRAFDMAHCSRCLIPWSAND--GMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 262 -~lp-----~~d~sFDlV~~~~~l~~~~~d~--~~~L~ei~RvLkPGG~lvl~ 306 (392)
-++ +..++||+|+... +.... ...+.+..++|||||++++.
T Consensus 119 e~l~~l~~~~~~~~~D~ifiD~----~~~~~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 119 DLIPQLKKKYDVDTLDMVFLDH----WKDRYLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp HHGGGHHHHSCCCCEEEEEECS----CGGGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred ccccchhhcccccccceeeecc----cccccccHHHHHHHhCccCCCcEEEEe
Confidence 222 4567899999763 33222 34677888999999988774
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.21 E-value=3.4e-06 Score=77.42 Aligned_cols=120 Identities=17% Similarity=0.143 Sum_probs=75.1
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCc-EEEEecccc
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPA-VIGVLGTIK 262 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~~~~~ 262 (392)
..+.+++.+.+.+.... ..++||+|||+|..+..+++. .|+++|+++..+.-+.. .++..++.. +.+..++..
T Consensus 94 eTE~lv~~~~~~~~~~~--~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~-Na~~~~~~~~~~i~~~~~~ 170 (271)
T d1nv8a_ 94 ETEELVELALELIRKYG--IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARK-NAERHGVSDRFFVRKGEFL 170 (271)
T ss_dssp THHHHHHHHHHHHHHHT--CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHH-HHHHTTCTTSEEEEESSTT
T ss_pred hhhhhhhhhhhhhcccc--ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHH-HHHHcCCCceeEEeecccc
Confidence 34556676666554322 238999999999888877654 79999998865555443 455556544 444555553
Q ss_pred CCC--CCCccceEEeccccccccc--------ChH----------HHH-HHHHHhccCCeEEEEEcCC
Q 036725 263 LPY--PSRAFDMAHCSRCLIPWSA--------NDG----------MYM-MEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 263 lp~--~d~sFDlV~~~~~l~~~~~--------d~~----------~~L-~ei~RvLkPGG~lvl~~p~ 309 (392)
.++ ..++||+|+|+--.++-.+ ++. .++ +-+.+.|+|||++++....
T Consensus 171 ~~~~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~ 238 (271)
T d1nv8a_ 171 EPFKEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE 238 (271)
T ss_dssp GGGGGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT
T ss_pred cccccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH
Confidence 333 3478999999843221100 111 222 2256789999999997643
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.20 E-value=1.7e-06 Score=75.90 Aligned_cols=78 Identities=13% Similarity=-0.014 Sum_probs=50.2
Q ss_pred HHhhCCCCCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccc
Q 036725 195 LASVIPMDSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFD 271 (392)
Q Consensus 195 l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFD 271 (392)
++.......|. +|||+|||+|.++..++.+ .|+++|+++..+..+. +.+...+....+...+...+ ++.||
T Consensus 38 ~~~~~~dl~g~--~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~-~N~~~~~~~~~~~~~d~~~~---~~~fD 111 (201)
T d1wy7a1 38 LAYSLGDIEGK--VVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLI-ENLGEFKGKFKVFIGDVSEF---NSRVD 111 (201)
T ss_dssp HHHHTTSSTTC--EEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH-HHTGGGTTSEEEEESCGGGC---CCCCS
T ss_pred HHHhcCCCCCC--EEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHH-HHHHHcCCCceEEECchhhh---CCcCc
Confidence 34444433443 8999999999999877766 6899988775444332 23344555544443333343 56799
Q ss_pred eEEeccc
Q 036725 272 MAHCSRC 278 (392)
Q Consensus 272 lV~~~~~ 278 (392)
+|+++--
T Consensus 112 ~Vi~nPP 118 (201)
T d1wy7a1 112 IVIMNPP 118 (201)
T ss_dssp EEEECCC
T ss_pred EEEEcCc
Confidence 9999853
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.18 E-value=1.5e-06 Score=76.16 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=43.9
Q ss_pred ceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccceEEecc
Q 036725 207 RTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDMAHCSR 277 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDlV~~~~ 277 (392)
++|||+|||+|.++..++.+ .|+++|+++ .+++.|+++.... .++..+. .+ +++||+|+++-
T Consensus 50 k~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~-----~a~~~ar~N~~~~-~~~~~D~~~l---~~~fD~Vi~NP 115 (197)
T d1ne2a_ 50 RSVIDAGTGNGILACGSYLLGAESVTAFDIDP-----DAIETAKRNCGGV-NFMVADVSEI---SGKYDTWIMNP 115 (197)
T ss_dssp SEEEEETCTTCHHHHHHHHTTBSEEEEEESCH-----HHHHHHHHHCTTS-EEEECCGGGC---CCCEEEEEECC
T ss_pred CEEEEeCCCCcHHHHHHHHcCCCcccccccCH-----HHHHHHHHccccc-cEEEEehhhc---CCcceEEEeCc
Confidence 49999999999988777765 699998755 3555666654333 3444444 54 46899999984
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.18 E-value=4.2e-06 Score=72.22 Aligned_cols=116 Identities=13% Similarity=0.007 Sum_probs=75.4
Q ss_pred ccHHHHHHHHHhhCCCC-CCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEecc
Q 036725 186 HGADAYIEELASVIPMD-SGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGT 260 (392)
Q Consensus 186 ~~~~~~i~~l~~~l~~~-~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~ 260 (392)
+..+...+.+.+++... .+ .+|||+.||+|.++...+.+ .|+.+|.+...+..... .+...+. ....+...+
T Consensus 23 Pt~~~vrealFn~l~~~~~~--~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~-N~~~~~~~~~~~i~~~D 99 (182)
T d2fhpa1 23 PTTDKVKESIFNMIGPYFDG--GMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKE-NIAITKEPEKFEVRKMD 99 (182)
T ss_dssp CCCHHHHHHHHHHHCSCCSS--CEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHH-HHHHHTCGGGEEEEESC
T ss_pred cCcHHHHHHHHHHHHHhcCC--CEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHH-Hhhhhhccccccccccc
Confidence 34455667777776532 33 38999999999999988887 68899887654433332 3333343 345555555
Q ss_pred c-c-C---CCCCCccceEEeccccccccc-ChHHHHHHHHH--hccCCeEEEEEc
Q 036725 261 I-K-L---PYPSRAFDMAHCSRCLIPWSA-NDGMYMMEIDR--VLRPGGYWVLSG 307 (392)
Q Consensus 261 ~-~-l---p~~d~sFDlV~~~~~l~~~~~-d~~~~L~ei~R--vLkPGG~lvl~~ 307 (392)
. + + .-....||+|++.- ||.. +....+..+.. +|+++|++++..
T Consensus 100 ~~~~l~~~~~~~~~fDlIflDP---PY~~~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 100 ANRALEQFYEEKLQFDLVLLDP---PYAKQEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp HHHHHHHHHHTTCCEEEEEECC---CGGGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred chhhhhhhcccCCCcceEEech---hhhhhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 3 2 2 22356899999864 3432 33667777754 699999999864
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=5.3e-06 Score=75.17 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=55.1
Q ss_pred HHHHHHhhCCC---CCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCc-EEEEeccc-
Q 036725 191 YIEELASVIPM---DSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPA-VIGVLGTI- 261 (392)
Q Consensus 191 ~i~~l~~~l~~---~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~-~~~~~~~~- 261 (392)
++..+.+++.. ......++||+|||+|..+..|+.+ +++++|+++..+..+.. .++..++.. +.......
T Consensus 44 ~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~-N~~~n~l~~~~~~~~~~~~ 122 (250)
T d2h00a1 44 YIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKK-NVEQNNLSDLIKVVKVPQK 122 (250)
T ss_dssp HHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHH-HHHHTTCTTTEEEEECCTT
T ss_pred HHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHH-HHHHhCCCcceeeeeeccH
Confidence 44444444432 2233458999999999999888875 89999998866655544 344445443 33333222
Q ss_pred c-C-----CCCCCccceEEecccc
Q 036725 262 K-L-----PYPSRAFDMAHCSRCL 279 (392)
Q Consensus 262 ~-l-----p~~d~sFDlV~~~~~l 279 (392)
. + ...+++||+|+|+--+
T Consensus 123 ~~~~~~~~~~~~~~fD~ivsNPPY 146 (250)
T d2h00a1 123 TLLMDALKEESEIIYDFCMCNPPF 146 (250)
T ss_dssp CSSTTTSTTCCSCCBSEEEECCCC
T ss_pred HhhhhhhhhcccCceeEEEecCcc
Confidence 1 1 2346789999998544
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.15 E-value=2.4e-06 Score=76.48 Aligned_cols=108 Identities=12% Similarity=0.108 Sum_probs=76.2
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCC-CcEEEEeccc-
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGV-PAVIGVLGTI- 261 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~-~~~~~~~~~~- 261 (392)
..++..+++... .++||+||+++|+.+.+|++. .++++|.++..... ..+...+.|. ..+.++.++.
T Consensus 48 g~~L~~L~~~~~-----~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~-A~~~~~~~g~~~~i~~~~g~a~ 121 (227)
T d1susa1 48 GQFLSMLLKLIN-----AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYEL-GLPVIKKAGVDHKIDFREGPAL 121 (227)
T ss_dssp HHHHHHHHHHHT-----CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHH-HHHHHHHTTCGGGEEEEESCHH
T ss_pred HHHHHHHHHhcC-----CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHH-HHHHHHHhccccceeeeehHHH
Confidence 346666666553 238999999999999998853 78999998754433 3334445565 3466666654
Q ss_pred -cCC------CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 262 -KLP------YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 262 -~lp------~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
.++ ...++||+|+.. ++......++..+.+.|+|||++++.
T Consensus 122 ~~L~~l~~~~~~~~~fD~iFiD----a~k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 122 PVLDEMIKDEKNHGSYDFIFVD----ADKDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp HHHHHHHHCGGGTTCBSEEEEC----SCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred HHHHHHHhccccCCceeEEEec----cchhhhHHHHHHHHhhcCCCcEEEEc
Confidence 232 125689999976 34445678899999999999999997
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.14 E-value=1.2e-06 Score=76.36 Aligned_cols=109 Identities=14% Similarity=0.168 Sum_probs=73.7
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC---CCcEEEEeccc-cC
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG---VPAVIGVLGTI-KL 263 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg---~~~~~~~~~~~-~l 263 (392)
++.+++.+...++. ++||++||+|.++..++++ .++++|.++. +++.|+++. ...+.++.++. .+
T Consensus 12 l~evi~~l~~~~~~--~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~-----~l~~a~~~l~~~~~r~~~~~~~f~~~ 84 (192)
T d1m6ya2 12 VREVIEFLKPEDEK--IILDCTVGEGGHSRAILEHCPGCRIIGIDVDSE-----VLRIAEEKLKEFSDRVSLFKVSYREA 84 (192)
T ss_dssp HHHHHHHHCCCTTC--EEEETTCTTSHHHHHHHHHCTTCEEEEEESCHH-----HHHHHHHHTGGGTTTEEEEECCGGGH
T ss_pred HHHHHHhhCCCCCC--EEEEecCCCcHHHHHHHhcCCCCeEEEeechHH-----HHHHHHHhhccccccccchhHHHhhH
Confidence 45556666555554 8999999999999999875 7888877654 444554432 23455666554 32
Q ss_pred -----CCCCCccceEEeccccccc--------ccChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 -----PYPSRAFDMAHCSRCLIPW--------SANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 -----p~~d~sFDlV~~~~~l~~~--------~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+..++||.|+.......+ .......|..+.++|+|||.+++..
T Consensus 85 ~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 85 DFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp HHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred HHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 3456889999865433111 0123578999999999999998865
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.10 E-value=1e-05 Score=70.80 Aligned_cols=110 Identities=20% Similarity=0.293 Sum_probs=73.0
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l 263 (392)
...++.+++++....+. +|||.|||+|.|+..+.++ .+.++|+.+..... ........++...
T Consensus 5 ~~i~~~m~~l~~~~~~~--~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~ 72 (223)
T d2ih2a1 5 PEVVDFMVSLAEAPRGG--RVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLL 72 (223)
T ss_dssp HHHHHHHHHHCCCCTTC--EEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGG
T ss_pred HHHHHHHHHhcCCCCcC--EEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhc
Confidence 45677788888755554 8999999999998887754 58899987643211 1122334444433
Q ss_pred CCCCCccceEEecccccccc---------------------------cC-hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 264 PYPSRAFDMAHCSRCLIPWS---------------------------AN-DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~---------------------------~d-~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
......||+|+++.-..... .+ ...++....+.|+|||++++..|..
T Consensus 73 ~~~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~ 147 (223)
T d2ih2a1 73 WEPGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT 147 (223)
T ss_dssp CCCSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred cccccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence 33467899999874432100 00 1256788899999999999988654
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.10 E-value=2.5e-06 Score=79.63 Aligned_cols=100 Identities=9% Similarity=0.002 Sum_probs=65.9
Q ss_pred ceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCC--cEEEEeccc-c----CCCCCCccceEEecc
Q 036725 207 RTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI-K----LPYPSRAFDMAHCSR 277 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~--~~~~~~~~~-~----lp~~d~sFDlV~~~~ 277 (392)
++|||+.||+|.++..++.. .|++||.+...+..+..+. ...++. .+.++.++. . .....+.||+|++.-
T Consensus 134 ~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~-~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDP 212 (309)
T d2igta1 134 LKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQ-VLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 212 (309)
T ss_dssp CEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHH-HHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred CeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhh-hhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECC
Confidence 48999999999999999887 7888988776555544433 333443 356666664 2 122357899999852
Q ss_pred ccc-------cc--ccChHHHHHHHHHhccCCeEEEEEc
Q 036725 278 CLI-------PW--SANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 278 ~l~-------~~--~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
--. .+ ..+...++..+.++|+|||.+++..
T Consensus 213 P~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 213 PKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp CSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred CcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 110 11 1123457778889999999766643
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.00 E-value=8.2e-06 Score=76.41 Aligned_cols=102 Identities=14% Similarity=0.083 Sum_probs=66.7
Q ss_pred ceEEEECCcCchHHHHHhhC---------CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCCCCCccceEEecc
Q 036725 207 RTALDTGCGVASWGAYLFKK---------NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPYPSRAFDMAHCSR 277 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~---------~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~~d~sFDlV~~~~ 277 (392)
.+|||.+||+|.++..+.++ .++|+|+++..+..+.... ...+........+.. ...+..+||+|+++.
T Consensus 119 ~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~-~~~~~~~~~~~~d~~-~~~~~~~fD~vi~NP 196 (328)
T d2f8la1 119 VSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGA-DLQRQKMTLLHQDGL-ANLLVDPVDVVISDL 196 (328)
T ss_dssp EEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHH-HHHTCCCEEEESCTT-SCCCCCCEEEEEEEC
T ss_pred CEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHH-HHhhhhhhhhccccc-cccccccccccccCC
Confidence 48999999999999887542 5788988765544443322 233444444443333 334467899999985
Q ss_pred ccccccc----------------C-hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 278 CLIPWSA----------------N-DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 278 ~l~~~~~----------------d-~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
-+..... + ...++..+.+.|+|||++++..|..
T Consensus 197 Py~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~ 246 (328)
T d2f8la1 197 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA 246 (328)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred CCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence 3311110 0 1247888999999999999987654
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.84 E-value=4.8e-05 Score=65.23 Aligned_cols=106 Identities=18% Similarity=0.245 Sum_probs=69.3
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI 261 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~ 261 (392)
++...+.+|.+......+ ..+|||+||+.|+|+.++.++ .++++|+.+.+ .++...+..++.
T Consensus 5 RaafKL~EI~~k~~l~k~-~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~------------~i~~~~~~~~d~ 71 (180)
T d1ej0a_ 5 RAWFKLDEIQQSDKLFKP-GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD------------PIVGVDFLQGDF 71 (180)
T ss_dssp HHHHHHHHHHHHHCCCCT-TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC------------CCTTEEEEESCT
T ss_pred HHHHHHHHHHHHhCccCC-CCeEEEEeccCCcceEEEEeeccccceEEEeeccccc------------ccCCceEeeccc
Confidence 344445556665554332 238999999999999988875 68899886642 234555555554
Q ss_pred cC---------CCCCCccceEEecccccccccCh-----------HHHHHHHHHhccCCeEEEEE
Q 036725 262 KL---------PYPSRAFDMAHCSRCLIPWSAND-----------GMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 262 ~l---------p~~d~sFDlV~~~~~l~~~~~d~-----------~~~L~ei~RvLkPGG~lvl~ 306 (392)
.. -...+.||+|++..+. ....+. ...+.-+.++||+||.|++=
T Consensus 72 ~~~~~~~~~~~~~~~~~~DlVlSD~ap-~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K 135 (180)
T d1ej0a_ 72 RDELVMKALLERVGDSKVQVVMSDMAP-NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK 135 (180)
T ss_dssp TSHHHHHHHHHHHTTCCEEEEEECCCC-CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccchhhhhhhhhccCcceeEEEecccc-hhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEE
Confidence 11 1235679999998554 221111 25667778999999999994
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=0.00012 Score=69.05 Aligned_cols=116 Identities=15% Similarity=0.121 Sum_probs=81.2
Q ss_pred cHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc--c
Q 036725 187 GADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI--K 262 (392)
Q Consensus 187 ~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~--~ 262 (392)
.++.+++.+.+.+....+. +|||+-||+|.|+..|+++ .|+++|.++..+.. ..+.++..++.+..++.++. .
T Consensus 196 ~~e~l~~~v~~~~~~~~~~--~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~-A~~na~~n~i~n~~~~~~~~~~~ 272 (358)
T d1uwva2 196 VNQKMVARALEWLDVQPED--RVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEK-GQQNARLNGLQNVTFYHENLEED 272 (358)
T ss_dssp HHHHHHHHHHHHHTCCTTC--EEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHH-HHHHHHHTTCCSEEEEECCTTSC
T ss_pred hhhHHHHHHHHhhccCCCc--eEEEecccccccchhccccccEEEeccCcHHHHHH-HHHhHHhcccccceeeecchhhh
Confidence 4566777788877654444 8999999999999999987 89999998754444 44567778888888877765 2
Q ss_pred CC---CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 263 LP---YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 263 lp---~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
++ .....||+|+..--.. -....+.++.+. +|.-+++++-.+.
T Consensus 273 ~~~~~~~~~~~d~vilDPPR~----G~~~~~~~l~~~-~~~~ivYVSCnp~ 318 (358)
T d1uwva2 273 VTKQPWAKNGFDKVLLDPARA----GAAGVMQQIIKL-EPIRIVYVSCNPA 318 (358)
T ss_dssp CSSSGGGTTCCSEEEECCCTT----CCHHHHHHHHHH-CCSEEEEEESCHH
T ss_pred hhhhhhhhccCceEEeCCCCc----cHHHHHHHHHHc-CCCEEEEEeCCHH
Confidence 22 2346799998653221 123566666654 7888888876544
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.81 E-value=1.1e-05 Score=74.05 Aligned_cols=96 Identities=14% Similarity=0.135 Sum_probs=64.1
Q ss_pred cceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHc--------------CCCcEEEEeccc-cCCCCC
Q 036725 206 VRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALER--------------GVPAVIGVLGTI-KLPYPS 267 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~r--------------g~~~~~~~~~~~-~lp~~d 267 (392)
.++||-||.|.|..+..+++. .++++|+++. .++.|++. .-+.+.++.++. ..--.+
T Consensus 73 p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~-----Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~ 147 (276)
T d1mjfa_ 73 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDED-----VIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN 147 (276)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHH-----HHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred CceEEEecCCchHHHHHHHHhCCceEEEecCCHH-----HHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc
Confidence 459999999999999998876 5777877664 33444321 124555565554 211135
Q ss_pred CccceEEecccccccccC----hHHHHHHHHHhccCCeEEEEEc
Q 036725 268 RAFDMAHCSRCLIPWSAN----DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 268 ~sFDlV~~~~~l~~~~~d----~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++||+|++.. ..+.... -..+++.+.+.|+|||+++.-.
T Consensus 148 ~~yDvIi~D~-~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 148 RGFDVIIADS-TDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp CCEEEEEEEC-CCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCEEEEeC-CCCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 7899999753 2232211 1578999999999999999854
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=6.7e-05 Score=65.75 Aligned_cols=109 Identities=13% Similarity=0.053 Sum_probs=72.8
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHh----hCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLF----KKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP 264 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~----~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp 264 (392)
.+.++.+. .++...+. ++||+|+|.|.=+..|+ +.+++.+|-...-.. ...+.+.+.++.++....+...--
T Consensus 52 rHi~DSl~-~~~~~~~~--~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~-FL~~~~~~L~L~nv~v~~~R~E~~ 127 (207)
T d1jsxa_ 52 RHILDSIV-VAPYLQGE--RFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVR-FLRQVQHELKLENIEPVQSRVEEF 127 (207)
T ss_dssp HHHHHHHH-HGGGCCSS--EEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHH-HHHHHHHHTTCSSEEEEECCTTTS
T ss_pred HHhcchHh-hhhhhcCC--ceeeeeccCCceeeehhhhcccceEEEEecchHHHH-HHHHHHHHcCCcceeeeccchhhh
Confidence 45555544 23333333 89999999996555544 237888987654322 233345567888777776666333
Q ss_pred CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 265 YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
..+.+||+|++..+. ....++.-+...++++|.+++.
T Consensus 128 ~~~~~fD~V~sRA~~-----~~~~ll~~~~~~l~~~g~~~~~ 164 (207)
T d1jsxa_ 128 PSEPPFDGVISRAFA-----SLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp CCCSCEEEEECSCSS-----SHHHHHHHHTTSEEEEEEEEEE
T ss_pred ccccccceehhhhhc-----CHHHHHHHHHHhcCCCcEEEEE
Confidence 346789999886432 5677888899999999999985
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=97.77 E-value=1.4e-05 Score=74.68 Aligned_cols=102 Identities=15% Similarity=0.139 Sum_probs=67.3
Q ss_pred CcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHH-cC---CCcEEEEeccc--cCCCCCCccceEE
Q 036725 205 MVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALE-RG---VPAVIGVLGTI--KLPYPSRAFDMAH 274 (392)
Q Consensus 205 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~-rg---~~~~~~~~~~~--~lp~~d~sFDlV~ 274 (392)
..++||.||.|.|..+..+++. +++++|+++..+..+...+... .+ -+.+.++.++. -+.-.+++||+|+
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence 3459999999999999998865 6888888765444333322221 11 24556666665 2333467899999
Q ss_pred eccccccccc-------ChHHHHHHHHHhccCCeEEEEEc
Q 036725 275 CSRCLIPWSA-------NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 275 ~~~~l~~~~~-------d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
... ..++.. .-..+++.+.+.|+|||++++-.
T Consensus 157 ~D~-~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 157 IDL-TDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEC-CCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EeC-CCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 653 222211 11578999999999999998854
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.76 E-value=0.00012 Score=67.42 Aligned_cols=106 Identities=16% Similarity=0.142 Sum_probs=69.3
Q ss_pred CCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHc---CCCcEEEEeccc--cC-CCCCCccceE
Q 036725 204 GMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALER---GVPAVIGVLGTI--KL-PYPSRAFDMA 273 (392)
Q Consensus 204 ~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~r---g~~~~~~~~~~~--~l-p~~d~sFDlV 273 (392)
...++||=||.|.|..+..+++. .++.+|+++..+..+..-+.... .-+.+..+.++. -+ ..++++||+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 34569999999999999999986 57888887643333322211111 125555555554 22 2346789999
Q ss_pred EecccccccccC----hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 274 HCSRCLIPWSAN----DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 274 ~~~~~l~~~~~d----~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
+.... .+.... ...+++.+.+.|+|||+++.-.+..
T Consensus 159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~ 198 (290)
T d1xj5a_ 159 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL 198 (290)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred EEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence 97532 222211 1579999999999999999976433
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.73 E-value=6.8e-05 Score=64.26 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=70.5
Q ss_pred HHHHHHHHhhCCC-CCCCcceEEEECCcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCC--cEEEEeccc-
Q 036725 189 DAYIEELASVIPM-DSGMVRTALDTGCGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVP--AVIGVLGTI- 261 (392)
Q Consensus 189 ~~~i~~l~~~l~~-~~~~~~~VLDiGCG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~--~~~~~~~~~- 261 (392)
+...+.+.+.+.. ..+. +|||+-||+|.++...+.+ .++.||.+...+. ...+.++..+.. .......+.
T Consensus 28 ~~vrealFn~l~~~~~~~--~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~-~ik~Ni~~l~~~~~~~~~~~~d~~ 104 (183)
T d2ifta1 28 DRVKETLFNWLMPYIHQS--ECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVAN-QLKKNLQTLKCSSEQAEVINQSSL 104 (183)
T ss_dssp CHHHHHHHHHHHHHHTTC--EEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHH-HHHHHHHHTTCCTTTEEEECSCHH
T ss_pred HHHHHHHHHHhhhhcccc--eEeecccCccceeeeeeeecceeeEEeecccchhh-hHhhHHhhhccccccccccccccc
Confidence 4444555555532 1333 8999999999999999988 6788877654222 222333333432 234344332
Q ss_pred ---cCCCCCCccceEEecccccccccCh-HHHHHHHHH--hccCCeEEEEEcC
Q 036725 262 ---KLPYPSRAFDMAHCSRCLIPWSAND-GMYMMEIDR--VLRPGGYWVLSGP 308 (392)
Q Consensus 262 ---~lp~~d~sFDlV~~~~~l~~~~~d~-~~~L~ei~R--vLkPGG~lvl~~p 308 (392)
........||+|++.- |+..+. ...+..+.. +|+++|++++..+
T Consensus 105 ~~l~~~~~~~~fDlIFlDP---PY~~~~~~~~l~~l~~~~~L~~~~liiiE~~ 154 (183)
T d2ifta1 105 DFLKQPQNQPHFDVVFLDP---PFHFNLAEQAISLLCENNWLKPNALIYVETE 154 (183)
T ss_dssp HHTTSCCSSCCEEEEEECC---CSSSCHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ccccccccCCcccEEEech---hHhhhhHHHHHHHHHHhCCcCCCcEEEEEec
Confidence 2334456799999874 444333 566666654 7999999999753
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.71 E-value=5.9e-05 Score=68.99 Aligned_cols=102 Identities=13% Similarity=0.113 Sum_probs=68.6
Q ss_pred cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC---CCcEEEEeccc--cCCCCCCccceEEec
Q 036725 206 VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG---VPAVIGVLGTI--KLPYPSRAFDMAHCS 276 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg---~~~~~~~~~~~--~lp~~d~sFDlV~~~ 276 (392)
.++||-||.|.|..+..+++. .++.+|+++..+..+..-+....+ -+.+..+.++. -+--.+++||+|+..
T Consensus 76 p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D 155 (274)
T d1iy9a_ 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD 155 (274)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred cceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEc
Confidence 358999999999999999975 678888877544333332222112 24555566654 233346789999976
Q ss_pred cccccccc----ChHHHHHHHHHhccCCeEEEEEcC
Q 036725 277 RCLIPWSA----NDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 277 ~~l~~~~~----d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.. .+... ....+++.+.+.|+|||+++.-..
T Consensus 156 ~~-~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~ 190 (274)
T d1iy9a_ 156 ST-EPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (274)
T ss_dssp CS-SCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred CC-CCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence 32 22211 125889999999999999998653
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=5.2e-05 Score=69.75 Aligned_cols=102 Identities=15% Similarity=0.094 Sum_probs=66.0
Q ss_pred CcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHH---cCCCcEEEEeccc--cCCCCCCccceEEe
Q 036725 205 MVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALE---RGVPAVIGVLGTI--KLPYPSRAFDMAHC 275 (392)
Q Consensus 205 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~---rg~~~~~~~~~~~--~lp~~d~sFDlV~~ 275 (392)
..++||-||.|.|..+..+++. +++.+|+++..+..+..-+... ..-+.+..+.++. -+--..++||+|++
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~ 157 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT 157 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEE
Confidence 3459999999999999999986 6778888664333333222111 1125566666664 23234678999998
Q ss_pred cccccccccC----hHHHHHHHHHhccCCeEEEEEc
Q 036725 276 SRCLIPWSAN----DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 276 ~~~l~~~~~d----~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.. ..+.... -..+++.+.+.|+|||++++-.
T Consensus 158 D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 158 DS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred cC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 63 2222211 1368999999999999999964
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.67 E-value=8.9e-05 Score=66.24 Aligned_cols=81 Identities=10% Similarity=0.162 Sum_probs=59.3
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc--CCCcEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER--GVPAVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r--g~~~~~~~~~~~-~l 263 (392)
+..++.+++.+....++ +|||||||+|.++..|++. +++++++++. ..+..+++ ..+++.++.++. .+
T Consensus 7 ~~i~~~iv~~~~~~~~d--~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~-----l~~~l~~~~~~~~n~~i~~~D~l~~ 79 (235)
T d1qama_ 7 KHNIDKIMTNIRLNEHD--NIFEIGSGKGHFTLELVQRCNFVTAIEIDHK-----LCKTTENKLVDHDNFQVLNKDILQF 79 (235)
T ss_dssp HHHHHHHHTTCCCCTTC--EEEEECCTTSHHHHHHHHHSSEEEEECSCHH-----HHHHHHHHTTTCCSEEEECCCGGGC
T ss_pred HHHHHHHHHhcCCCCCC--eEEEECCCchHHHHHHHhCcCceEEEeeccc-----hHHHHHHHhhcccchhhhhhhhhhc
Confidence 56788899888766665 8999999999999999987 7899977543 44444443 346677777777 77
Q ss_pred CCCCCccceEEec
Q 036725 264 PYPSRAFDMAHCS 276 (392)
Q Consensus 264 p~~d~sFDlV~~~ 276 (392)
+++......|+++
T Consensus 80 ~~~~~~~~~vv~N 92 (235)
T d1qama_ 80 KFPKNQSYKIFGN 92 (235)
T ss_dssp CCCSSCCCEEEEE
T ss_pred cccccccceeeee
Confidence 7765555556665
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.64 E-value=7.5e-05 Score=68.96 Aligned_cols=104 Identities=13% Similarity=0.013 Sum_probs=67.8
Q ss_pred CcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHc---CCCcEEEEeccc--cCCCCCCccceEEe
Q 036725 205 MVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALER---GVPAVIGVLGTI--KLPYPSRAFDMAHC 275 (392)
Q Consensus 205 ~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~r---g~~~~~~~~~~~--~lp~~d~sFDlV~~ 275 (392)
..++||-||.|.|..+..+++. .|+++|+++..+..+..-+.... .-+.+..+.++. -+.-.+++||+|++
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 168 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 168 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence 3459999999999999999886 57888887654443332222211 124555555554 33334678999997
Q ss_pred cccccccc-c----ChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 276 SRCLIPWS-A----NDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 276 ~~~l~~~~-~----d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
.. ..+.. . ....+++.+.+.|+|||+++.-...
T Consensus 169 D~-~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s 206 (295)
T d1inla_ 169 DS-TDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED 206 (295)
T ss_dssp EC-----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred cC-CCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence 63 22221 0 1258999999999999999996543
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.62 E-value=0.00036 Score=62.26 Aligned_cols=94 Identities=9% Similarity=0.014 Sum_probs=65.4
Q ss_pred ceEEEECCcCchHHHHHh----hCCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC---CCCccceEEeccc
Q 036725 207 RTALDTGCGVASWGAYLF----KKNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY---PSRAFDMAHCSRC 278 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~----~~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~---~d~sFDlV~~~~~ 278 (392)
.+++|||+|.|.=+..|+ +.+++-+|-...-.. -..+.+.+.++.++..+.+.. .+.. ..++||+|++..+
T Consensus 72 ~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~-FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRAv 150 (239)
T d1xdza_ 72 NTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRIT-FLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARAV 150 (239)
T ss_dssp CEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHH-HHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEECC
T ss_pred CeEEeecCCCchHHHHHHHhCCCccceeecchHHHHH-HHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhhh
Confidence 489999999996555444 337888877553222 122344566888887766654 3321 2468999998743
Q ss_pred ccccccChHHHHHHHHHhccCCeEEEEE
Q 036725 279 LIPWSANDGMYMMEIDRVLRPGGYWVLS 306 (392)
Q Consensus 279 l~~~~~d~~~~L~ei~RvLkPGG~lvl~ 306 (392)
. ....++.-....+++||.+++-
T Consensus 151 a-----~l~~ll~~~~~~l~~~g~~i~~ 173 (239)
T d1xdza_ 151 A-----RLSVLSELCLPLVKKNGLFVAL 173 (239)
T ss_dssp S-----CHHHHHHHHGGGEEEEEEEEEE
T ss_pred h-----CHHHHHHHHhhhcccCCEEEEE
Confidence 3 6678899999999999999985
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.60 E-value=7.9e-06 Score=73.78 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=59.9
Q ss_pred HHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHc--CCCcEEEEeccc-cCC
Q 036725 190 AYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALER--GVPAVIGVLGTI-KLP 264 (392)
Q Consensus 190 ~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~r--g~~~~~~~~~~~-~lp 264 (392)
..++.+++.+....++ +|||||||+|.++..|++. .++++|++...+. .++++ ..+++.++.++. +++
T Consensus 16 ~ii~kIv~~~~~~~~d--~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~-----~l~~~~~~~~n~~ii~~D~l~~~ 88 (245)
T d1yuba_ 16 KVLNQIIKQLNLKETD--TVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFN-----LSSEKLKLNTRVTLIHQDILQFQ 88 (245)
T ss_dssp TTHHHHHHHCCCCSSE--EEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSS-----SSSCTTTTCSEEEECCSCCTTTT
T ss_pred HHHHHHHHhcCCCCCC--eEEEECCCccHHHHHHHhhcCceeEeeecccchh-----hhhhhhhhccchhhhhhhhhccc
Confidence 3577788888755554 8999999999999999886 7899988775433 23333 235677777776 778
Q ss_pred CCCCccceEEecc
Q 036725 265 YPSRAFDMAHCSR 277 (392)
Q Consensus 265 ~~d~sFDlV~~~~ 277 (392)
++...++.|+++.
T Consensus 89 ~~~~~~~~vv~NL 101 (245)
T d1yuba_ 89 FPNKQRYKIVGNI 101 (245)
T ss_dssp CCCSSEEEEEEEC
T ss_pred cccceeeeEeeee
Confidence 8888888888764
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.59 E-value=4.4e-05 Score=71.03 Aligned_cols=98 Identities=16% Similarity=0.094 Sum_probs=64.1
Q ss_pred cceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcC--------CCcEEEEeccc--cCCCCCCccc
Q 036725 206 VRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERG--------VPAVIGVLGTI--KLPYPSRAFD 271 (392)
Q Consensus 206 ~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg--------~~~~~~~~~~~--~lp~~d~sFD 271 (392)
.++||-||.|.|..+..+++. .++.+|+++. .++.+++.- -+.+.++.++. -+--..++||
T Consensus 107 pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~-----Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yD 181 (312)
T d2b2ca1 107 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEM-----VIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFD 181 (312)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHH-----HHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEE
T ss_pred CCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHH-----HHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCC
Confidence 458999999999999999986 5777877553 444444321 24555565554 2223467899
Q ss_pred eEEeccccccccc----ChHHHHHHHHHhccCCeEEEEEcCC
Q 036725 272 MAHCSRCLIPWSA----NDGMYMMEIDRVLRPGGYWVLSGPL 309 (392)
Q Consensus 272 lV~~~~~l~~~~~----d~~~~L~ei~RvLkPGG~lvl~~p~ 309 (392)
+|++... .+... .-..+++.+.+.|+|||+++.-...
T Consensus 182 vII~D~~-dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s 222 (312)
T d2b2ca1 182 VIITDSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQGES 222 (312)
T ss_dssp EEEECCC--------------HHHHHHHHEEEEEEEEEECCC
T ss_pred EEEEcCC-CCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence 9998632 22211 1147899999999999999996543
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.48 E-value=0.00035 Score=59.76 Aligned_cols=109 Identities=19% Similarity=0.254 Sum_probs=75.3
Q ss_pred HHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC-----
Q 036725 192 IEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL----- 263 (392)
Q Consensus 192 i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l----- 263 (392)
++++++.+...++. .++|..+|.|..+..++++ +|+++|..+. +++.+++...+...++.+.. .+
T Consensus 7 l~Evl~~l~~~~g~--~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~-----ai~~a~~~~~~~~~~~~~~f~~~~~~l~ 79 (182)
T d1wg8a2 7 YQEALDLLAVRPGG--VYVDATLGGAGHARGILERGGRVIGLDQDPE-----AVARAKGLHLPGLTVVQGNFRHLKRHLA 79 (182)
T ss_dssp HHHHHHHHTCCTTC--EEEETTCTTSHHHHHHHHTTCEEEEEESCHH-----HHHHHHHTCCTTEEEEESCGGGHHHHHH
T ss_pred HHHHHHhcCCCCCC--EEEEeCCCCcHHHHHHhcccCcEEEEhhhhh-----HHHHHhhccccceeEeehHHHHHHHHHH
Confidence 44555555555555 8999999999999999988 7889987553 45566665556666666654 22
Q ss_pred CCCCCccceEEecccccccc-c-------ChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 PYPSRAFDMAHCSRCLIPWS-A-------NDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l~~~~-~-------d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.+..+.+|.|+....+..+. + .....|.....+|+|||.+++..
T Consensus 80 ~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~ 131 (182)
T d1wg8a2 80 ALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIA 131 (182)
T ss_dssp HTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Confidence 23457799999765442221 0 12357888899999999999875
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.45 E-value=0.00011 Score=65.71 Aligned_cols=117 Identities=16% Similarity=0.125 Sum_probs=67.2
Q ss_pred CccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecc
Q 036725 185 PHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGT 260 (392)
Q Consensus 185 ~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~ 260 (392)
...+...+..+.+..-..++. +|+|+|||.|.|+.+++++ .+.++++.. +.++.-+ .....+-+.+.+....
T Consensus 48 ~SR~~~Kl~~~~~~~~~~~~~--~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~-d~~e~P~-~~~~~~~ni~~~~~~~ 123 (257)
T d2p41a1 48 VSRGSAKLRWFVERNLVTPEG--KVVDLGCGRGGWSYYCGGLKNVREVKGLTKGG-PGHEEPI-PMSTYGWNLVRLQSGV 123 (257)
T ss_dssp SSTHHHHHHHHHHTTSSCCCE--EEEEETCTTSHHHHHHHTSTTEEEEEEECCCS-TTSCCCC-CCCSTTGGGEEEECSC
T ss_pred cchHHHHHHHHHHhcCccCCC--eEEEecCCCChHHHHHHhhcCCCceeEEEecC-ccccCCc-cccccccccccchhhh
Confidence 344555556666655443433 7999999999999999877 455666532 2211000 0001111223333333
Q ss_pred ccCCCCCCccceEEecccccccccCh-------HHHHHHHHHhccCCeEEEEEc
Q 036725 261 IKLPYPSRAFDMAHCSRCLIPWSAND-------GMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 261 ~~lp~~d~sFDlV~~~~~l~~~~~d~-------~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.-.-.+....|+|+|..+- . ..+. -.+|.-+.+.|+|||-|++=+
T Consensus 124 dv~~l~~~~~D~vlcDm~e-s-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKV 175 (257)
T d2p41a1 124 DVFFIPPERCDTLLCDIGE-S-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 175 (257)
T ss_dssp CTTTSCCCCCSEEEECCCC-C-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred hHHhcCCCcCCEEEeeCCC-C-CCCchhhhhhHHHHHHHHHHHcccCCEEEEEE
Confidence 2223357789999998532 2 1122 256677789999999998853
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.38 E-value=0.00032 Score=64.21 Aligned_cols=110 Identities=12% Similarity=0.043 Sum_probs=74.5
Q ss_pred CCCCCCCcceEEEECCcCchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC--CCCCCccce
Q 036725 199 IPMDSGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL--PYPSRAFDM 272 (392)
Q Consensus 199 l~~~~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l--p~~d~sFDl 272 (392)
+....+. +|||+.+|.|.=+..|++. .++++|.+..-+.. ..+..+..|..++.....+... ....+.||.
T Consensus 98 L~~~~g~--~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~-l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~ 174 (284)
T d1sqga2 98 LAPQNGE--HILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSR-VYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDR 174 (284)
T ss_dssp HCCCTTC--EEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHH-HHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEE
T ss_pred cCccccc--eeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhh-HhhhhhcccccceeeeccccccchhcccccccE
Confidence 3433444 8999999999887777654 58999998865544 4456667788777666555422 234578999
Q ss_pred EEec------cccc-------ccccC--------hHHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 273 AHCS------RCLI-------PWSAN--------DGMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 273 V~~~------~~l~-------~~~~d--------~~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
|++. .++- .+.+. ...+|..+.+.|||||+++.++....
T Consensus 175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 234 (284)
T d1sqga2 175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 234 (284)
T ss_dssp EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence 9943 1110 11111 12788999999999999999987663
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.36 E-value=0.00034 Score=67.59 Aligned_cols=119 Identities=17% Similarity=0.148 Sum_probs=76.7
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC-----------------CcEEEeCCccChHHHHHHHHHHcCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK-----------------NVITMSFAPRDSHEAQVQFALERGV 251 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----------------~v~~vd~s~~d~~~a~~~~a~~rg~ 251 (392)
...++.+.+++....+. +|||-.||+|.|...+.++ .+.|+|+++....-+...... ++.
T Consensus 148 ~~Iv~~mv~ll~~~~~~--~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l-~g~ 224 (425)
T d2okca1 148 RPLIQAMVDCINPQMGE--TVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL-HGI 224 (425)
T ss_dssp HHHHHHHHHHHCCCTTC--CEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH-TTC
T ss_pred hhhhHhhheeccCcccc--eeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh-cCC
Confidence 45778888887644443 8999999999998776542 588999876655544444433 232
Q ss_pred C--cEEEEeccccCCCCCCccceEEecccccc-c-c-------------cC-hHHHHHHHHHhccCCeEEEEEcCCC
Q 036725 252 P--AVIGVLGTIKLPYPSRAFDMAHCSRCLIP-W-S-------------AN-DGMYMMEIDRVLRPGGYWVLSGPLI 310 (392)
Q Consensus 252 ~--~~~~~~~~~~lp~~d~sFDlV~~~~~l~~-~-~-------------~d-~~~~L~ei~RvLkPGG~lvl~~p~~ 310 (392)
. ......++.-...+...||+|+++.-+.. + . .+ ...++..+.+.|++||.+.+..|..
T Consensus 225 ~~~~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~ 301 (425)
T d2okca1 225 GTDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN 301 (425)
T ss_dssp CSSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred ccccceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechH
Confidence 1 11223333322345678999999843310 0 0 01 1368899999999999999987643
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.29 E-value=0.00049 Score=63.87 Aligned_cols=110 Identities=17% Similarity=0.163 Sum_probs=71.5
Q ss_pred CCCCCCCcceEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccce
Q 036725 199 IPMDSGMVRTALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFDM 272 (392)
Q Consensus 199 l~~~~~~~~~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFDl 272 (392)
+....+. +|||+.+|.|.=+..+++. .+++.|.+..-+.. ..+.....+..++.....+. .++..+..||.
T Consensus 112 l~~~~g~--~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~-l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ 188 (313)
T d1ixka_ 112 LDPKPGE--IVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRE-TRLNLSRLGVLNVILFHSSSLHIGELNVEFDK 188 (313)
T ss_dssp HCCCTTC--EEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHH-HHHHHHHHTCCSEEEESSCGGGGGGGCCCEEE
T ss_pred ccCCccc--eeeecccchhhhhHhhhhhcccccceeeeccCHHHHHH-HHHHHHHHHhhccccccccccccccccccccE
Confidence 3334554 8999999999876666543 47888886543322 23344556777776665554 56666788999
Q ss_pred EEec----cc--c-----cccccC----------hHHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 273 AHCS----RC--L-----IPWSAN----------DGMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 273 V~~~----~~--l-----~~~~~d----------~~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
|++. .. + ..|... ...+|....+.|||||+++.++....
T Consensus 189 ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~ 248 (313)
T d1ixka_ 189 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 248 (313)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred EEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence 9952 11 1 011101 12788999999999999999987663
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.72 E-value=0.0041 Score=56.79 Aligned_cols=102 Identities=8% Similarity=-0.039 Sum_probs=64.0
Q ss_pred eEEEECCcCchHHHHHhhC-----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCC---CCccceEEec--
Q 036725 208 TALDTGCGVASWGAYLFKK-----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYP---SRAFDMAHCS-- 276 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~~-----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~---d~sFDlV~~~-- 276 (392)
+|||+.+|.|.-+..|++. .++++|+++.-+. ...+.+.+.|+.++.....+. .+... .+.||.|+..
T Consensus 97 ~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~-~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL~DaP 175 (293)
T d2b9ea1 97 HVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLA-SMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPS 175 (293)
T ss_dssp EEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHH-HHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEECCC
T ss_pred eEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHH-HHHHHHHhcCccceeeeehhhhhhcccccccceeeEEeecCc
Confidence 8999999999988877653 5889998764333 344555667888877666654 44322 2579999953
Q ss_pred --cc--c-----ccc----cc-Ch-------HHHHHHHHHhccCCeEEEEEcCCCc
Q 036725 277 --RC--L-----IPW----SA-ND-------GMYMMEIDRVLRPGGYWVLSGPLIN 311 (392)
Q Consensus 277 --~~--l-----~~~----~~-d~-------~~~L~ei~RvLkPGG~lvl~~p~~~ 311 (392)
.. + ..| .. +. ..+|.... .|+|||+++.++....
T Consensus 176 CSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~ 230 (293)
T d2b9ea1 176 CSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLC 230 (293)
T ss_dssp CCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCC
T ss_pred ccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCC
Confidence 11 1 011 10 00 13444444 4799999999986663
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.68 E-value=0.0015 Score=59.31 Aligned_cols=84 Identities=18% Similarity=0.254 Sum_probs=54.0
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPY 265 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~ 265 (392)
...++.+++.+....++ .|||||+|.|.++..|+++ +++++++++..+..-...+.......++..+.++. ...+
T Consensus 7 ~~i~~kIv~~~~~~~~d--~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~ 84 (278)
T d1zq9a1 7 PLIINSIIDKAALRPTD--VVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDL 84 (278)
T ss_dssp HHHHHHHHHHTCCCTTC--EEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCC
T ss_pred HHHHHHHHHHhCCCCCC--EEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhh
Confidence 45778888887755554 8999999999999999986 89999886643322221111111124566666665 4444
Q ss_pred CCCccceEEec
Q 036725 266 PSRAFDMAHCS 276 (392)
Q Consensus 266 ~d~sFDlV~~~ 276 (392)
+ .++.|+++
T Consensus 85 ~--~~~~vV~N 93 (278)
T d1zq9a1 85 P--FFDTCVAN 93 (278)
T ss_dssp C--CCSEEEEE
T ss_pred h--hhhhhhcc
Confidence 3 35677776
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=96.67 E-value=0.0013 Score=65.07 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=73.8
Q ss_pred CCCccHHHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC----------------------CcEEEeCCccChHH
Q 036725 183 QFPHGADAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK----------------------NVITMSFAPRDSHE 240 (392)
Q Consensus 183 ~f~~~~~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~----------------------~v~~vd~s~~d~~~ 240 (392)
+|+.. ...++.+++++....+. +|+|-.||+|.|.....+. .+.|.|+.+....-
T Consensus 145 qfyTP-~~Iv~~mv~ll~~~~~~--~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~l 221 (524)
T d2ar0a1 145 QYFTP-RPLIKTIIHLLKPQPRE--VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL 221 (524)
T ss_dssp CCCCC-HHHHHHHHHHHCCCTTC--CEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred hhccc-cchhHhhhhcccCccch--hhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHH
Confidence 44433 45678888887654444 8999999999998765431 47899887654443
Q ss_pred HHHHHHHHcCCCcE-----EEEecc-c-cCCCCCCccceEEeccccc-cc-----------ccC-hHHHHHHHHHhccCC
Q 036725 241 AQVQFALERGVPAV-----IGVLGT-I-KLPYPSRAFDMAHCSRCLI-PW-----------SAN-DGMYMMEIDRVLRPG 300 (392)
Q Consensus 241 a~~~~a~~rg~~~~-----~~~~~~-~-~lp~~d~sFDlV~~~~~l~-~~-----------~~d-~~~~L~ei~RvLkPG 300 (392)
+...... .+.... ....++ . ........||+|+++.-+. .+ ..+ .-.++..+.+.|++|
T Consensus 222 a~~nl~l-~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~g 300 (524)
T d2ar0a1 222 ALMNCLL-HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG 300 (524)
T ss_dssp HHHHHHT-TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred HHHHHHh-hcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcccc
Confidence 3333322 222211 011111 1 0112346799999984321 00 001 135889999999999
Q ss_pred eEEEEEcCCC
Q 036725 301 GYWVLSGPLI 310 (392)
Q Consensus 301 G~lvl~~p~~ 310 (392)
|++.+..|..
T Consensus 301 Gr~aiIlP~~ 310 (524)
T d2ar0a1 301 GRAAVVVPDN 310 (524)
T ss_dssp EEEEEEEEHH
T ss_pred CcEEEEEehH
Confidence 9999987643
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.0024 Score=57.12 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=49.2
Q ss_pred HHHHHHHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChHHHHHHHHHHcC--CCcEEEEeccc-cC
Q 036725 189 DAYIEELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSHEAQVQFALERG--VPAVIGVLGTI-KL 263 (392)
Q Consensus 189 ~~~i~~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~~a~~~~a~~rg--~~~~~~~~~~~-~l 263 (392)
...++.+++.+....++ .|||||||.|.++..|+++ ++++++++.. ..+..+++. .+++..+.++. ..
T Consensus 7 ~~~~~~Iv~~~~~~~~d--~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~-----l~~~L~~~~~~~~~~~ii~~D~l~~ 79 (252)
T d1qyra_ 7 QFVIDSIVSAINPQKGQ--AMVEIGPGLAALTEPVGERLDQLTVIELDRD-----LAARLQTHPFLGPKLTIYQQDAMTF 79 (252)
T ss_dssp HHHHHHHHHHHCCCTTC--CEEEECCTTTTTHHHHHTTCSCEEEECCCHH-----HHHHHHTCTTTGGGEEEECSCGGGC
T ss_pred HHHHHHHHHhcCCCCCC--EEEEECCCchHHHHHHHccCCceEEEEeccc-----hhHHHHHHhhhccchhHHhhhhhhh
Confidence 45677888887655554 8999999999999999987 8999977543 444444432 25566666665 54
Q ss_pred CC
Q 036725 264 PY 265 (392)
Q Consensus 264 p~ 265 (392)
++
T Consensus 80 ~~ 81 (252)
T d1qyra_ 80 NF 81 (252)
T ss_dssp CH
T ss_pred cc
Confidence 43
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.25 E-value=0.0026 Score=56.17 Aligned_cols=91 Identities=14% Similarity=0.146 Sum_probs=54.4
Q ss_pred eEEEECCcCchHHHHHhh--------CCcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cC----CCCCCccceEE
Q 036725 208 TALDTGCGVASWGAYLFK--------KNVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KL----PYPSRAFDMAH 274 (392)
Q Consensus 208 ~VLDiGCG~G~~~~~L~~--------~~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~l----p~~d~sFDlV~ 274 (392)
+|||||++.|..+..+++ .+++++|+.+..... +. ...+.+.+..++. .. -+....+|+|+
T Consensus 83 ~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~-----~~-~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIf 156 (232)
T d2bm8a1 83 TIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI-----PA-SDMENITLHQGDCSDLTTFEHLREMAHPLIF 156 (232)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC-----CG-GGCTTEEEEECCSSCSGGGGGGSSSCSSEEE
T ss_pred EEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhh-----hh-ccccceeeeecccccHHHHHHHHhcCCCEEE
Confidence 899999999976655542 279999986432111 11 1124455555543 21 13455789888
Q ss_pred ecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 275 CSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 275 ~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.... |.......-+ ++...|++||++++..
T Consensus 157 ID~~--H~~~~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 157 IDNA--HANTFNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp EESS--CSSHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred EcCC--cchHHHHHHH-HHhcccCcCCEEEEEc
Confidence 6532 3221222223 4678999999999965
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.20 E-value=0.0034 Score=59.37 Aligned_cols=95 Identities=11% Similarity=0.054 Sum_probs=62.7
Q ss_pred ceEEEECCcCchHHHHHhh-C---CcEEEeCCccChHHHHHHHHHHcCCCc---------------EEEEeccc-cC-CC
Q 036725 207 RTALDTGCGVASWGAYLFK-K---NVITMSFAPRDSHEAQVQFALERGVPA---------------VIGVLGTI-KL-PY 265 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~-~---~v~~vd~s~~d~~~a~~~~a~~rg~~~---------------~~~~~~~~-~l-p~ 265 (392)
.+|||..||+|..+...+. . .|++.|+++..+.. ..+.++.+++.. +.....+. .+ .-
T Consensus 47 ~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~-i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~ 125 (375)
T d2dula1 47 KIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYEL-MKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 125 (375)
T ss_dssp SEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHH-HHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHH-HHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence 3899999999999986544 3 68888888754333 333444444322 22222232 11 11
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....||+|... ++. .+..+|....|.++.||++.++.
T Consensus 126 ~~~~fDvIDiD----PfG-s~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 126 RHRYFHFIDLD----PFG-SPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp STTCEEEEEEC----CSS-CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCcCCcccCC----CCC-CcHHHHHHHHHHhccCCEEEEEe
Confidence 24579999865 454 66789999999999999999974
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=95.45 E-value=0.012 Score=54.97 Aligned_cols=100 Identities=19% Similarity=0.358 Sum_probs=63.8
Q ss_pred ceEEEECCcCchHHHHHhhC--------------------CcEEEeCCccChHHHHHHHHHHcCC-Cc--EEEEeccc-c
Q 036725 207 RTALDTGCGVASWGAYLFKK--------------------NVITMSFAPRDSHEAQVQFALERGV-PA--VIGVLGTI-K 262 (392)
Q Consensus 207 ~~VLDiGCG~G~~~~~L~~~--------------------~v~~vd~s~~d~~~a~~~~a~~rg~-~~--~~~~~~~~-~ 262 (392)
-+|.|+||.+|..+..+.+. .|.--|+-..|.+.-.......... +. +..+.++. .
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 47999999999766322211 3455677777776544333222221 12 23344555 4
Q ss_pred CCCCCCccceEEecccccccccC---------------------------------hHHHHHHHHHhccCCeEEEEEc
Q 036725 263 LPYPSRAFDMAHCSRCLIPWSAN---------------------------------DGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 263 lp~~d~sFDlV~~~~~l~~~~~d---------------------------------~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
--||++|.|++||+.++ ||... ...+|+-=.+-|+|||.++++.
T Consensus 133 rLfP~~Slh~~~Ss~al-HWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 133 RLFPRNTLHFIHSSYSL-MWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp CCSCTTCBSCEEEESCT-TBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hcCCCCceEEeeehhhh-hhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 45899999999999887 56321 1246777777889999999964
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.89 E-value=0.01 Score=49.11 Aligned_cols=97 Identities=18% Similarity=0.155 Sum_probs=59.1
Q ss_pred CCCCCCCcceEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc-CCCCCCccceE
Q 036725 199 IPMDSGMVRTALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK-LPYPSRAFDMA 273 (392)
Q Consensus 199 l~~~~~~~~~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~-lp~~d~sFDlV 273 (392)
....+++ +||-+|+| .|.++..+++. +++++|.++. ..+.+++.|...++....... ..-..+.||.|
T Consensus 23 ~~~~~g~--~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~-----k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~v 95 (168)
T d1piwa2 23 NGCGPGK--KVGIVGLGGIGSMGTLISKAMGAETYVISRSSR-----KREDAMKMGADHYIATLEEGDWGEKYFDTFDLI 95 (168)
T ss_dssp TTCSTTC--EEEEECCSHHHHHHHHHHHHHTCEEEEEESSST-----THHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEE
T ss_pred hCcCCCC--EEEEECCCCcchhHHHHhhhccccccccccchh-----HHHHhhccCCcEEeeccchHHHHHhhhcccceE
Confidence 3444554 89999998 67777777765 6777776553 556778888654332111111 11124579988
Q ss_pred EecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 274 HCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 274 ~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+..-...+- ..+....++|||+|.+++.+
T Consensus 96 i~~~~~~~~-----~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 96 VVCASSLTD-----IDFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp EECCSCSTT-----CCTTTGGGGEEEEEEEEECC
T ss_pred EEEecCCcc-----chHHHHHHHhhccceEEEec
Confidence 864222111 12456789999999999975
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.31 E-value=0.05 Score=44.47 Aligned_cols=95 Identities=16% Similarity=0.105 Sum_probs=60.1
Q ss_pred CCCCCCcceEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC---------CC
Q 036725 200 PMDSGMVRTALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP---------YP 266 (392)
Q Consensus 200 ~~~~~~~~~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp---------~~ 266 (392)
....++ +||=+||| .|.++..+++. +++++|. ++...+.+++.+.............. ..
T Consensus 23 ~~~~g~--~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~-----~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~ 95 (170)
T d1e3ja2 23 GVQLGT--TVLVIGAGPIGLVSVLAAKAYGAFVVCTAR-----SPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAI 95 (170)
T ss_dssp TCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEEES-----CHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred CCCCCC--EEEEEcccccchhhHhhHhhhcccccccch-----HHHHHHHHHHcCCcEEEeccccccccchhhhhhhccc
Confidence 444554 78889988 56777777665 6777754 44567788888765443222111100 01
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.+.+|+|+-.- .....+.+..++|||+|.+++.+.
T Consensus 96 g~g~D~vid~~-------g~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 96 GDLPNVTIDCS-------GNEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp SSCCSEEEECS-------CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred ccCCceeeecC-------CChHHHHHHHHHHhcCCceEEEec
Confidence 24589887531 223568888999999999999763
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.07 E-value=0.071 Score=45.05 Aligned_cols=101 Identities=17% Similarity=0.115 Sum_probs=63.2
Q ss_pred hhCCCCCCCcceEEEECCcC-chHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCCC------
Q 036725 197 SVIPMDSGMVRTALDTGCGV-ASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLPY------ 265 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiGCG~-G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp~------ 265 (392)
+.....+++ +||-+|||. |..+..+++. .|+++|. ++...+.|++.|...+ + .....++
T Consensus 19 ~~a~v~~G~--tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~-----~~~rl~~a~~~Ga~~~--~-~~~~~~~~~~i~~ 88 (195)
T d1kola2 19 VTAGVGPGS--TVYVAGAGPVGLAAAASARLLGAAVVIVGDL-----NPARLAHAKAQGFEIA--D-LSLDTPLHEQIAA 88 (195)
T ss_dssp HHTTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEEES-----CHHHHHHHHHTTCEEE--E-TTSSSCHHHHHHH
T ss_pred HHhCCCCCC--EEEEECcCHHHHHHHHHHHhhcccceeeecc-----cchhhHhhhhccccEE--E-eCCCcCHHHHHHH
Confidence 344555665 899999997 6666666653 5777765 3457778888885332 2 2111111
Q ss_pred --CCCccceEEeccccc-----c---cccChHHHHHHHHHhccCCeEEEEEc
Q 036725 266 --PSRAFDMAHCSRCLI-----P---WSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 266 --~d~sFDlV~~~~~l~-----~---~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....+|+++-.-... + ........+.++.+++||||.+++.+
T Consensus 89 ~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 89 LLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp HHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred HhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 234689988532110 0 01123478999999999999999975
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.19 E-value=0.054 Score=44.55 Aligned_cols=96 Identities=15% Similarity=0.183 Sum_probs=60.4
Q ss_pred HhhCCCCCCCcceEEEECC--cCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC------C
Q 036725 196 ASVIPMDSGMVRTALDTGC--GVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL------P 264 (392)
Q Consensus 196 ~~~l~~~~~~~~~VLDiGC--G~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l------p 264 (392)
.+.....+++ +||-+|+ |.|..+..+++. ++++++- ++...+.+++.|...++ ...+.++ .
T Consensus 21 ~~~~~~~~g~--~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~-----~~~~~~~~~~~Ga~~vi-~~~~~~~~~~i~~~ 92 (174)
T d1yb5a2 21 IHSACVKAGE--SVLVHGASGGVGLAACQIARAYGLKILGTAG-----TEEGQKIVLQNGAHEVF-NHREVNYIDKIKKY 92 (174)
T ss_dssp HTTSCCCTTC--EEEEETCSSHHHHHHHHHHHHTTCEEEEEES-----SHHHHHHHHHTTCSEEE-ETTSTTHHHHHHHH
T ss_pred HHHhCCCCCC--EEEEEeccccccccccccccccCcccccccc-----cccccccccccCccccc-ccccccHHHHhhhh
Confidence 3444444554 8999996 467777777765 5555543 23456788888865443 2211111 1
Q ss_pred CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 265 YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
...+.||+|+... -...+.+..++|+|+|.++..+
T Consensus 93 t~~~g~d~v~d~~--------g~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 93 VGEKGIDIIIEML--------ANVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp HCTTCEEEEEESC--------HHHHHHHHHHHEEEEEEEEECC
T ss_pred hccCCceEEeecc--------cHHHHHHHHhccCCCCEEEEEe
Confidence 2356799998642 1346888899999999999864
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=92.80 E-value=0.077 Score=43.91 Aligned_cols=96 Identities=20% Similarity=0.282 Sum_probs=59.3
Q ss_pred hhCCCCCCCcceEEEECCc-CchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC--------
Q 036725 197 SVIPMDSGMVRTALDTGCG-VASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL-------- 263 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiGCG-~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l-------- 263 (392)
+.....+++ +||-+|+| .|.++..+++. +|+++|. ++...+.+++.|...++ .......
T Consensus 22 ~~~~~~~G~--~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~-----~~~~~~~a~~lGa~~vi-~~~~~~~~~~~~~i~ 93 (182)
T d1vj0a2 22 EYPESFAGK--TVVIQGAGPLGLFGVVIARSLGAENVIVIAG-----SPNRLKLAEEIGADLTL-NRRETSVEERRKAIM 93 (182)
T ss_dssp TCSSCCBTC--EEEEECCSHHHHHHHHHHHHTTBSEEEEEES-----CHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHH
T ss_pred HHhCCCCCC--EEEEECCCccchhheeccccccccccccccc-----ccccccccccccceEEE-eccccchHHHHHHHH
Confidence 333444554 89999988 36777777765 4677755 44566788888754332 1111110
Q ss_pred C-CCCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 264 P-YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 264 p-~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
. .....+|+|+-.-.. ...+.+..+.|++||.+++.+
T Consensus 94 ~~~~~~g~Dvvid~vG~-------~~~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 94 DITHGRGADFILEATGD-------SRALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp HHTTTSCEEEEEECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred HhhCCCCceEEeecCCc-------hhHHHHHHHHhcCCCEEEEEe
Confidence 0 123459999854211 135788899999999998864
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=92.17 E-value=0.12 Score=42.74 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=61.1
Q ss_pred hhCCCCCCCcceEEEECCcC-chHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC-----C-C
Q 036725 197 SVIPMDSGMVRTALDTGCGV-ASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL-----P-Y 265 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiGCG~-G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l-----p-~ 265 (392)
+.....+++ +||=+|||. |.++..+++. .|+++|. ++...+.+++.|...++ ...+... . .
T Consensus 21 ~~a~~~~g~--~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~-----~~~r~~~a~~lGa~~~i-~~~~~~~~~~v~~~t 92 (174)
T d1jqba2 21 ELADIEMGS--SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS-----RPICVEAAKFYGATDIL-NYKNGHIEDQVMKLT 92 (174)
T ss_dssp HHTTCCTTC--CEEEECCSHHHHHHHHHHHTTTCSCEEEECC-----CHHHHHHHHHHTCSEEE-CGGGSCHHHHHHHHT
T ss_pred HHhCCCCCC--EEEEEcCCcchhhhhhhhhcccccccccccc-----hhhhHHHHHhhCccccc-cccchhHHHHHHHHh
Confidence 444545555 788899985 7888888875 5778854 44567788888854332 1111111 0 1
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....||+|+-.-.. ...+.+..++|||+|.+++.+
T Consensus 93 ~g~G~D~vid~~g~-------~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 93 NGKGVDRVIMAGGG-------SETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp TTSCEEEEEECSSC-------TTHHHHHHHHEEEEEEEEECC
T ss_pred hccCcceEEEccCC-------HHHHHHHHHHHhcCCEEEEEe
Confidence 23459999864221 134788889999999999965
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=91.99 E-value=0.092 Score=43.20 Aligned_cols=97 Identities=15% Similarity=0.112 Sum_probs=59.4
Q ss_pred HhhCCCCCCCcceEEEECCcC-chHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC-----CC
Q 036725 196 ASVIPMDSGMVRTALDTGCGV-ASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL-----PY 265 (392)
Q Consensus 196 ~~~l~~~~~~~~~VLDiGCG~-G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l-----p~ 265 (392)
.+.....+++ +||=+|||. |..+..+++. .++++|. ++...+.+++.|...++ .....+. .+
T Consensus 21 ~~~~~~~~g~--~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~-----~~~k~~~a~~~Ga~~~i-~~~~~~~~~~i~~~ 92 (174)
T d1f8fa2 21 INALKVTPAS--SFVTWGAGAVGLSALLAAKVCGASIIIAVDI-----VESRLELAKQLGATHVI-NSKTQDPVAAIKEI 92 (174)
T ss_dssp HTTTCCCTTC--EEEEESCSHHHHHHHHHHHHHTCSEEEEEES-----CHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHH
T ss_pred HHhhCCCCCC--EEEEeCCCHHHhhhhhcccccccceeeeecc-----HHHHHHHHHHcCCeEEE-eCCCcCHHHHHHHH
Confidence 4444444554 788899874 4455555544 4555644 44567788888864432 2221111 12
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.++.||+|+-.- --...+.+..+++||+|.+++.+
T Consensus 93 t~gg~D~vid~~-------G~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 93 TDGGVNFALEST-------GSPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp TTSCEEEEEECS-------CCHHHHHHHHHTEEEEEEEEECC
T ss_pred cCCCCcEEEEcC-------CcHHHHHHHHhcccCceEEEEEe
Confidence 245799998531 12356788999999999999965
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=90.62 E-value=0.17 Score=41.06 Aligned_cols=96 Identities=17% Similarity=0.228 Sum_probs=58.5
Q ss_pred hhCCCCCCCcceEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc-cCCCCCCccc
Q 036725 197 SVIPMDSGMVRTALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI-KLPYPSRAFD 271 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~-~lp~~d~sFD 271 (392)
+.....+++ +||=+|+| .|.++..+++. +++++|.... ..+++++.|...++ ..... ......+.+|
T Consensus 24 ~~~~~~~G~--~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~-----~~~~a~~lGad~~i-~~~~~~~~~~~~~~~D 95 (168)
T d1uufa2 24 RHWQAGPGK--KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA-----KREAAKALGADEVV-NSRNADEMAAHLKSFD 95 (168)
T ss_dssp HHTTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG-----GHHHHHHHTCSEEE-ETTCHHHHHTTTTCEE
T ss_pred HHhCCCCCC--EEEEeccchHHHHHHHHhhcccccchhhccchh-----HHHHHhccCCcEEE-ECchhhHHHHhcCCCc
Confidence 344445555 78889987 46777777765 4556654332 44577787765442 22222 1112245799
Q ss_pred eEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 272 MAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 272 lV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
.|+-.-.. . ..+....++|+++|.+++.+
T Consensus 96 ~vid~~g~-~------~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 96 FILNTVAA-P------HNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp EEEECCSS-C------CCHHHHHTTEEEEEEEEECC
T ss_pred eeeeeeec-c------hhHHHHHHHHhcCCEEEEec
Confidence 98854221 1 12677889999999999965
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.50 E-value=0.16 Score=41.47 Aligned_cols=96 Identities=17% Similarity=0.112 Sum_probs=59.6
Q ss_pred CCCCCCCcceEEEECCcC-chHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEecccc--C----C-CC
Q 036725 199 IPMDSGMVRTALDTGCGV-ASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIK--L----P-YP 266 (392)
Q Consensus 199 l~~~~~~~~~VLDiGCG~-G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~--l----p-~~ 266 (392)
....+++ +||=+|+|. |.++..+++. +|+++|. ++...+.|++.|............ . . -.
T Consensus 22 ~~~~~gd--~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~-----~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~ 94 (171)
T d1pl8a2 22 GGVTLGH--KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDL-----SATRLSKAKEIGADLVLQISKESPQEIARKVEGQL 94 (171)
T ss_dssp HTCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEEES-----CHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHH
T ss_pred hCCCCCC--EEEEECCCccHHHHHHHHHHcCCceEEeccC-----CHHHHHHHHHhCCcccccccccccccccccccccC
Confidence 3444554 788899975 4555555554 5777754 455777888888654432221110 0 0 01
Q ss_pred CCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 267 SRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 267 d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
...+|+|+-.- -....+....+.+|+||.+++.+-
T Consensus 95 g~g~Dvvid~~-------G~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 95 GCKPEVTIECT-------GAEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp TSCCSEEEECS-------CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred CCCceEEEecc-------CCchhHHHHHHHhcCCCEEEEEec
Confidence 24689988642 123468889999999999999763
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.45 E-value=0.17 Score=44.13 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=32.4
Q ss_pred CCCCCccceEEecccc----cc------cccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 264 PYPSRAFDMAHCSRCL----IP------WSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 264 p~~d~sFDlV~~~~~l----~~------~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
.++++|+|+|+++--. .. +.+.....+.++.|+|||||.+++...
T Consensus 18 ~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~ 72 (279)
T d1eg2a_ 18 KLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG 72 (279)
T ss_dssp TSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence 3679999999987421 01 111235788999999999999998653
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=90.20 E-value=0.14 Score=44.03 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=29.5
Q ss_pred CCCCccceEEeccccc----cc---------ccChHHHHHHHHHhccCCeEEEEEc
Q 036725 265 YPSRAFDMAHCSRCLI----PW---------SANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~----~~---------~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
++++++|+|+++--.. .+ .......+.++.|+|+|||.+++..
T Consensus 19 lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 19 VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence 4688999999873210 11 1112368899999999999988753
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.81 E-value=0.31 Score=40.27 Aligned_cols=88 Identities=20% Similarity=0.208 Sum_probs=56.0
Q ss_pred eEEEEC--CcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc---cCCCCCCccceEEecccc
Q 036725 208 TALDTG--CGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI---KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 208 ~VLDiG--CG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~---~lp~~d~sFDlV~~~~~l 279 (392)
+||=.| .|.|+++..|++. +|+++.-++. ..+.+++.|...++-..... ......+.+|+|+-.-.
T Consensus 34 ~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~-----k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg- 107 (176)
T d1xa0a2 34 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAA-----EHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG- 107 (176)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTT-----CHHHHHHTTCSEEEECC---------CCSCCEEEEEECST-
T ss_pred EEEEEeccchHHHHHHHHHHHcCCceEEecCchH-----HHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC-
Confidence 788877 4577899998876 6676654433 34566777765543221111 11234568999886421
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEcC
Q 036725 280 IPWSANDGMYMMEIDRVLRPGGYWVLSGP 308 (392)
Q Consensus 280 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~p 308 (392)
...+.+..++|+|||.++..++
T Consensus 108 -------g~~~~~~l~~l~~~Griv~~G~ 129 (176)
T d1xa0a2 108 -------GRTLATVLSRMRYGGAVAVSGL 129 (176)
T ss_dssp -------TTTHHHHHHTEEEEEEEEECSC
T ss_pred -------chhHHHHHHHhCCCceEEEeec
Confidence 2247899999999999999654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=89.41 E-value=0.48 Score=38.79 Aligned_cols=97 Identities=13% Similarity=0.118 Sum_probs=62.2
Q ss_pred hhCCCCCCCcceEEEECCcC-chHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC-------
Q 036725 197 SVIPMDSGMVRTALDTGCGV-ASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP------- 264 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiGCG~-G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp------- 264 (392)
+.....+++ +||=+|||. |.++..+++. .|+++|.++ ...+.+++.|...++.... .+..
T Consensus 22 ~~a~v~~G~--~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~-----~r~~~a~~~Ga~~~i~~~~-~~~~~~~~~~~ 93 (174)
T d1e3ia2 22 NTAKVTPGS--TCAVFGLGCVGLSAIIGCKIAGASRIIAIDING-----EKFPKAKALGATDCLNPRE-LDKPVQDVITE 93 (174)
T ss_dssp TTSCCCTTC--EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG-----GGHHHHHHTTCSEEECGGG-CSSCHHHHHHH
T ss_pred HhhCCCCCC--EEEEECCChHHHHHHHHHHHhCCceeeeeccch-----HHHHHHHHhCCCcccCCcc-chhhhhhhHhh
Confidence 344444554 889999986 7777777775 566776544 3667888888654421111 1111
Q ss_pred CCCCccceEEecccccccccChHHHHHHHHHhccCC-eEEEEEcC
Q 036725 265 YPSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPG-GYWVLSGP 308 (392)
Q Consensus 265 ~~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPG-G~lvl~~p 308 (392)
...+.+|+|+-.- -....+.+..+.|++| |.+++.+.
T Consensus 94 ~~~~G~d~vie~~-------G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 94 LTAGGVDYSLDCA-------GTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp HHTSCBSEEEESS-------CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred hhcCCCcEEEEec-------ccchHHHHHHHHhhcCCeEEEecCC
Confidence 1235689997431 2245689999999996 99999764
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.86 E-value=0.18 Score=40.72 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=55.0
Q ss_pred CCCCCCCcceEEEECCc-CchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC-----CCCCCc
Q 036725 199 IPMDSGMVRTALDTGCG-VASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL-----PYPSRA 269 (392)
Q Consensus 199 l~~~~~~~~~VLDiGCG-~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l-----p~~d~s 269 (392)
....+++ +||=+|+| .|.++..+++. +|+++|. ++...+.+++.|....+ .....+. ....+.
T Consensus 23 ~~~~~g~--~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~-----~~~~~~~a~~~Ga~~~i-~~~~~~~~~~~~~~~~g~ 94 (166)
T d1llua2 23 TNARPGQ--WVAISGIGGLGHVAVQYARAMGLHVAAIDI-----DDAKLELARKLGASLTV-NARQEDPVEAIQRDIGGA 94 (166)
T ss_dssp HTCCTTC--EEEEECCSHHHHHHHHHHHHTTCEEEEEES-----CHHHHHHHHHTTCSEEE-ETTTSCHHHHHHHHHSSE
T ss_pred hCCCCCC--EEEEeeccccHHHHHHHHHHcCCccceecc-----hhhHHHhhhccCccccc-cccchhHHHHHHHhhcCC
Confidence 3444554 78889987 46666666665 5666654 44567788888854432 2111111 011233
Q ss_pred cceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 270 FDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 270 FDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+|.|.+.. ....+.+..+.|+|||.+++.+
T Consensus 95 ~~~i~~~~--------~~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 95 HGVLVTAV--------SNSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp EEEEECCS--------CHHHHHHHHTTEEEEEEEEECC
T ss_pred cccccccc--------cchHHHHHHHHhcCCcEEEEEE
Confidence 44444431 1346788899999999999975
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.30 E-value=0.31 Score=39.12 Aligned_cols=93 Identities=18% Similarity=0.152 Sum_probs=53.7
Q ss_pred CCCCCCcceEEEECCcC-chHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc---cCC-CCCCccc
Q 036725 200 PMDSGMVRTALDTGCGV-ASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI---KLP-YPSRAFD 271 (392)
Q Consensus 200 ~~~~~~~~~VLDiGCG~-G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~---~lp-~~d~sFD 271 (392)
...+++ +||=.|+|. |..+..+++. ++++++ .++...+++++.|...+....+.. .+. ...+.+|
T Consensus 24 ~~~~g~--~vlv~G~G~iG~~a~~~a~~~g~~v~~~~-----~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~ 96 (168)
T d1rjwa2 24 GAKPGE--WVAIYGIGGLGHVAVQYAKAMGLNVVAVD-----IGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHA 96 (168)
T ss_dssp TCCTTC--EEEEECCSTTHHHHHHHHHHTTCEEEEEC-----SCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred CCCCCC--EEEEeecccchhhhhHHHhcCCCeEeccC-----CCHHHhhhhhhcCcceecccccchhhhhcccccCCCce
Confidence 334454 788889875 4555555554 555553 344567788888865442211110 000 1133445
Q ss_pred eEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 272 MAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 272 lV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
+|++. . -...+....+.|+|||.+++.+
T Consensus 97 ~v~~~-~-------~~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 97 AVVTA-V-------SKPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp EEESS-C-------CHHHHHHHHHHEEEEEEEEECC
T ss_pred EEeec-C-------CHHHHHHHHHHhccCCceEecc
Confidence 55432 1 1356899999999999999965
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.21 E-value=0.33 Score=39.58 Aligned_cols=95 Identities=20% Similarity=0.191 Sum_probs=58.1
Q ss_pred hhCCCCCCCcceEEEEC--CcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccCC------C
Q 036725 197 SVIPMDSGMVRTALDTG--CGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKLP------Y 265 (392)
Q Consensus 197 ~~l~~~~~~~~~VLDiG--CG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~lp------~ 265 (392)
+.....+++ +||=.| .|.|.++..+++. .+++++- +....+.+++.|...++ ...+.++. .
T Consensus 19 ~~~~~~~g~--~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~-----~~~~~~~l~~~Ga~~vi-~~~~~~~~~~v~~~t 90 (183)
T d1pqwa_ 19 EVGRLSPGE--RVLIHSATGGVGMAAVSIAKMIGARIYTTAG-----SDAKREMLSRLGVEYVG-DSRSVDFADEILELT 90 (183)
T ss_dssp TTSCCCTTC--EEEETTTTSHHHHHHHHHHHHHTCEEEEEES-----SHHHHHHHHTTCCSEEE-ETTCSTHHHHHHHHT
T ss_pred HHhCCCCCC--EEEEECCCCCcccccchhhccccccceeeec-----ccccccccccccccccc-cCCccCHHHHHHHHh
Confidence 444444454 788877 3467788888776 4444432 22355677877765432 22221110 1
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
....||+|+..-. ...+.++.++||++|.++..+
T Consensus 91 ~~~g~d~v~d~~g--------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 91 DGYGVDVVLNSLA--------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp TTCCEEEEEECCC--------THHHHHHHHTEEEEEEEEECS
T ss_pred CCCCEEEEEeccc--------chHHHHHHHHhcCCCEEEEEc
Confidence 3467999997522 235788899999999999864
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=85.73 E-value=0.35 Score=39.07 Aligned_cols=95 Identities=21% Similarity=0.228 Sum_probs=58.1
Q ss_pred hCCCCCCCcceEEEECCc--CchHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC------CC
Q 036725 198 VIPMDSGMVRTALDTGCG--VASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL------PY 265 (392)
Q Consensus 198 ~l~~~~~~~~~VLDiGCG--~G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l------p~ 265 (392)
.....+++ +||=+|++ .|.++..+++. .|++++. ++...+++++.|....+ .....+. -.
T Consensus 22 ~~~~~~g~--~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~-----~~~~~~~~~~~Ga~~~i-~~~~~~~~~~~~~~~ 93 (170)
T d1jvba2 22 KASLDPTK--TLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV-----REEAVEAAKRAGADYVI-NASMQDPLAEIRRIT 93 (170)
T ss_dssp HTTCCTTC--EEEEETTTSHHHHHHHHHHHHHTCCEEEEEES-----SHHHHHHHHHHTCSEEE-ETTTSCHHHHHHHHT
T ss_pred HhCCCCCC--EEEEEeccccceeeeeeccccccccccccccc-----chhhHHHHHHcCCceee-ccCCcCHHHHHHHHh
Confidence 34444554 89999973 55666666553 5666654 34567788888754332 2221111 01
Q ss_pred CCCccceEEecccccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 266 PSRAFDMAHCSRCLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 266 ~d~sFDlV~~~~~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
..+.||+|+... --...+....+.|+|||.+++.+
T Consensus 94 ~~~~~d~vid~~-------g~~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 94 ESKGVDAVIDLN-------NSEKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp TTSCEEEEEESC-------CCHHHHTTGGGGEEEEEEEEECC
T ss_pred hcccchhhhccc-------ccchHHHhhhhhcccCCEEEEec
Confidence 245699998642 22345778889999999999875
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=84.47 E-value=0.93 Score=39.52 Aligned_cols=86 Identities=8% Similarity=0.039 Sum_probs=53.7
Q ss_pred HHHhhCCCCCCCcceEEEECCcCchHHHHHhhC--CcEEEeCCccChH--HHHHHHHHHcC------CCcEEEEeccc--
Q 036725 194 ELASVIPMDSGMVRTALDTGCGVASWGAYLFKK--NVITMSFAPRDSH--EAQVQFALERG------VPAVIGVLGTI-- 261 (392)
Q Consensus 194 ~l~~~l~~~~~~~~~VLDiGCG~G~~~~~L~~~--~v~~vd~s~~d~~--~a~~~~a~~rg------~~~~~~~~~~~-- 261 (392)
.|.+.+....+...+|||.=+|.|..+..|+.. .|++++-++.... +...+.+.... ..++.++.++.
T Consensus 77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~ 156 (250)
T d2oyra1 77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLT 156 (250)
T ss_dssp HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHH
T ss_pred HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHH
Confidence 445555544444448999999999999988876 8999988764211 11122222211 12456666664
Q ss_pred cCCCCCCccceEEecccc
Q 036725 262 KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 262 ~lp~~d~sFDlV~~~~~l 279 (392)
-+.-...+||+|+..-++
T Consensus 157 ~L~~~~~~~DvIYlDPMF 174 (250)
T d2oyra1 157 ALTDITPRPQVVYLDPMF 174 (250)
T ss_dssp HSTTCSSCCSEEEECCCC
T ss_pred HHhccCCCCCEEEECCCC
Confidence 344346789999987665
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.82 E-value=0.35 Score=43.91 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=33.8
Q ss_pred HHHHHHHHhhCCCC----CCCcceEEEECCcCchHHHHHhhC----CcEEEeCCcc
Q 036725 189 DAYIEELASVIPMD----SGMVRTALDTGCGVASWGAYLFKK----NVITMSFAPR 236 (392)
Q Consensus 189 ~~~i~~l~~~l~~~----~~~~~~VLDiGCG~G~~~~~L~~~----~v~~vd~s~~ 236 (392)
...++.+++.+... .....+|||||.|.|.++..|.++ ++++++.+..
T Consensus 23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~ 78 (322)
T d1i4wa_ 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSS 78 (322)
T ss_dssp HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHH
T ss_pred HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHH
Confidence 34566666655432 123348999999999999999764 5899988653
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=82.94 E-value=0.67 Score=37.45 Aligned_cols=87 Identities=17% Similarity=0.147 Sum_probs=54.1
Q ss_pred eEEEECCcC-chHHHHHhhC----CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccccC----C-CCCCccceEEecc
Q 036725 208 TALDTGCGV-ASWGAYLFKK----NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTIKL----P-YPSRAFDMAHCSR 277 (392)
Q Consensus 208 ~VLDiGCG~-G~~~~~L~~~----~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~~l----p-~~d~sFDlV~~~~ 277 (392)
+||=+|+|. |.++..+++. .++++|. ++...+.+++.|...++ ....... . ...+.+|+|+-.-
T Consensus 35 ~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~-----~~~k~~~~~~~ga~~~i-~~~~~~~~~~~~~~~~~g~d~vid~~ 108 (172)
T d1h2ba2 35 YVAIVGVGGLGHIAVQLLKVMTPATVIALDV-----KEEKLKLAERLGADHVV-DARRDPVKQVMELTRGRGVNVAMDFV 108 (172)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCCCEEEEEES-----SHHHHHHHHHTTCSEEE-ETTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred EEEEeCCChHHHHHHHHHHhhcCcccccccc-----hhHHHHHHhhcccceee-cCcccHHHHHHHhhCCCCceEEEEec
Confidence 788899885 4555566553 5566654 33467788887754332 2211110 0 1234589988542
Q ss_pred cccccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 278 CLIPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 278 ~l~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
-....+....+.|++||.+++.+
T Consensus 109 -------g~~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 109 -------GSQATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp -------CCHHHHHHGGGGEEEEEEEEECC
T ss_pred -------CcchHHHHHHHHHhCCCEEEEEe
Confidence 12346888999999999999976
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=81.58 E-value=1.3 Score=35.96 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=56.3
Q ss_pred eEEEEC--CcCchHHHHHhhC---CcEEEeCCccChHHHHHHHHHHcCCCcEEEEeccc---cCCCCCCccceEEecccc
Q 036725 208 TALDTG--CGVASWGAYLFKK---NVITMSFAPRDSHEAQVQFALERGVPAVIGVLGTI---KLPYPSRAFDMAHCSRCL 279 (392)
Q Consensus 208 ~VLDiG--CG~G~~~~~L~~~---~v~~vd~s~~d~~~a~~~~a~~rg~~~~~~~~~~~---~lp~~d~sFDlV~~~~~l 279 (392)
+||=-| .|.|.++..|++. +|+++.-+.. ..+.+++.|...++...+.. ......+.+|+|+-.-
T Consensus 26 ~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~-----k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~v-- 98 (167)
T d1tt7a2 26 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNRE-----AADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPV-- 98 (167)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSS-----THHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESC--
T ss_pred EEEEeCCcchHHHHHHHHHHHcCCceEEEecCHH-----HHHHHHhhcccceEeccchhchhhhcccCCCceEEEecC--
Confidence 577666 4577899888886 7777654432 45567777766543222111 1122346799987541
Q ss_pred cccccChHHHHHHHHHhccCCeEEEEEc
Q 036725 280 IPWSANDGMYMMEIDRVLRPGGYWVLSG 307 (392)
Q Consensus 280 ~~~~~d~~~~L~ei~RvLkPGG~lvl~~ 307 (392)
-...+.+..+.|+|+|.++..+
T Consensus 99 ------gg~~~~~~~~~l~~~G~iv~~G 120 (167)
T d1tt7a2 99 ------GGKQLASLLSKIQYGGSVAVSG 120 (167)
T ss_dssp ------CTHHHHHHHTTEEEEEEEEECC
T ss_pred ------cHHHHHHHHHHhccCceEEEee
Confidence 1346889999999999999865
|