Citrus Sinensis ID: 036756

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-

AGQLVRNELASLGIEYTWPFAKTGIVASVGSGVQPWFGLRADMDALPIQEMVEWEHKSKNNGKMHACGHDVHTTMLLGAARLLKQRKDRLKGTVKLVFQPGEESYGGAYHMIKEGALEKFQGIFGLHVAPELPTGTIGSRPGPMLAGSMRFLAVIEGKGGHAAMPHATRDPVLAASFAILALQQIVSRETDPLEARVIEMQAAVHQCSATLDFMEEKLRPYPATVNDEEMYEHAKKVGTSLLGEANVHLLPMAMGAEDFSFYSQKMAAALFMIGTRNETLKPVVRLHSPYLVIDEDVLPIGAALHAAVAISYLDDHAVETQ

cHHHHHHHHHHcccEEEEcccccEEEEEEccccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccEEEEEEccccccccHHHHHHHccccccccEEEEEccccccccEEEEEccccccccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEcEEEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHcccccEEEccccccccHHHHHHcccccEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcc

cHHHHHHHHHHcccEEEccccccEEEEEEccccccEEEEEEcccccccHHcccccccccccccEEcccccHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccHHHHHHccccccccEEEEEEccccccccEEEEcccccEccccEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEccHccccccEEEEcccccccccccccHHHHHHHHHHHHHHccccccEcccccccHHHHHHHHHHcccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccc

AGQLVRNELASLGieytwpfaktgivasvgsgvqpwfglradmdalpiQEMVEWEHksknngkmhacghdVHTTMLLGAARLLKQRKDRLKGTVKlvfqpgeesyggayHMIKEGALEKFQGifglhvapelptgtigsrpgpmlagSMRFLAVIEgkgghaamphatrdPVLAASFAILALQQIVSRETDPLEARVIEMQAAVHQCSATLDFMeeklrpypatvndeeMYEHAKKVGTSLLgeanvhllpmamgaedfsFYSQKMAAALFMIGtrnetlkpvvrlhspylvidedvlPIGAALHAAVAISYLddhavetq

AGQLVRNELASLGIEYTWPFAKTGIVASVGSGVQPWFGLRADMDALPIQEMVEWEHKSKNNGKMHACGHDVHTTMLLGAARLLKQRKDRLKGTVKlvfqpgeesygGAYHMIKEGALEKFQGIFGLHVAPELPTGTIGSRPGPMLAGSMRFLAVIEGKGGHAAMPHATRDPVLAASFAILALQQIVSRETDPLEARVIEMQAAVHQCSATLDFMEEKLRPYPATVNDEEMYEHAKKVGTSLLGEANVHLLPMAMGAEDFSFYSQKMAAALFMIGTRNETLKPVVRLHSPYLVIDEDVLPIGAALHAAVAISYLDDHAVETQ

*******ELASLGIEYTWPFAKTGIVASVGSGVQPWFGLRADMDALPIQEMVEWEHKSKNNGKMHACGHDVHTTMLLGAARLLKQRKDRLKGTVKLVFQPGEESYGGAYHMIKEGALEKFQGIFGLHVAPELPTGTIGSRPGPMLAGSMRFLAVIEGKGGHAAMPHATRDPVLAASFAILALQQIVSRETDPLEARVIEMQAAVHQCSATLDFMEEKLRPYPATVNDEEMYEHAKKVGTSLLGEANVHLLPMAMGAEDFSFYSQKMAAALFMIGTRNETLKPVVRLHSPYLVIDEDVLPIGAALHAAVAISYLDD******

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		321	2.2.26 [Sep-21-2011]
Q851L5		417	IAA-amino acid hydrolase	yes	no	0.956	0.736	0.539	1e-107
Q8H3C9		455	IAA-amino acid hydrolase	yes	no	0.981	0.692	0.548	1e-107
Q851L6		414	IAA-amino acid hydrolase	no	no	0.968	0.751	0.546	1e-105
P54968		442	IAA-amino acid hydrolase	yes	no	0.981	0.712	0.525	1e-105
Q8H3C8		444	IAA-amino acid hydrolase	no	no	0.968	0.700	0.516	1e-102
Q8H3C7		440	IAA-amino acid hydrolase	no	no	0.981	0.715	0.513	9e-96
Q8S9S4		442	IAA-amino acid hydrolase	no	no	0.978	0.710	0.477	4e-89
Q84XG9		442	IAA-amino acid hydrolase	N/A	no	0.978	0.710	0.474	9e-89
Q5Z678		510	IAA-amino acid hydrolase	no	no	0.953	0.6	0.482	3e-87
O04373		440	IAA-amino acid hydrolase	no	no	0.965	0.704	0.473	8e-87

>sp\|Q851L5\|ILL3_ORYSJ IAA-amino acid hydrolase ILR1-like 3 OS=Oryza sativa subsp. japonica GN=ILL3 PE=2 SV=1	Back alignment and function desciption

 Score =  388 bits (997), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/371 (53%), Positives = 241/371 (64%), Gaps = 64/371 (17%)

Query: 4   LVRNELASLGIEYTWPFAKTGIVASV--GSGVQPWFGLRADMDALPIQEMVEWEHKSKNN 61
           LVR EL +LG+ Y WP A+TG+VA+V   +G  P FGLRADMDALPIQEMVEWE KS  +
Sbjct: 49  LVRAELDALGVAYVWPVAQTGVVATVVGAAGPGPVFGLRADMDALPIQEMVEWEFKSLED 108

Query: 62  GKMHACGHDVHTTMLLGAARLLKQRKDRLKGTVKLVFQPGEESYGGAYHMIKEGALEKFQ 121
           GKMHACGHDVH  MLLGAA+LL+ R+D   G VKLVFQP EE Y G Y++++EGA++  Q
Sbjct: 109 GKMHACGHDVHVAMLLGAAKLLQSRRDHFNGKVKLVFQPAEEGYAGGYYVLEEGAVDDVQ 168

Query: 122 GIFGLHVAPELPTGTIGSRPGPMLAGSMRFLAVIEGKGGHAAMPHATRDPVLAASFAILA 181
           GIFG+HV   LP G + SRPGP LAGS RF A I GKGGHAA PH   DP++A S A+L+
Sbjct: 169 GIFGMHVDAGLPAGVVASRPGPFLAGSARFTATINGKGGHAAAPHHAVDPIVAVSSAVLS 228

Query: 182 LQQIVSRETDPLEA-------------------------------------------RVI 198
           LQQIV+RETDPL+                                             VI
Sbjct: 229 LQQIVARETDPLQGAVVSVTTIKGGEAFNVIPESVTLGGTLRSMTTDGMSYLMKRIREVI 288

Query: 199 EMQAAVHQCSATLDFMEEKLRPYPATVNDEEMYEHAKKVGTSLLGEANVHLLPMAMGAED 258
           E QAAV++C+A +DFME+KL PYPATVNDEEMY HAK V  S+LGEANV L P  MGAED
Sbjct: 289 EGQAAVNRCTAAVDFMEDKLPPYPATVNDEEMYAHAKAVAESMLGEANVKLSPQGMGAED 348

Query: 259 FSFYSQKMAAALFM------------IGTRNETLKPVVRLHSPYLVIDEDVLPIGAALHA 306
           F FY+Q++ AA F               T+N+       LHSP+ V+DE+ LP+GAA HA
Sbjct: 349 FGFYAQRIPAAFFGIGVGNDGGGMAETTTKNQ-------LHSPHFVVDEEALPVGAAFHA 401

Query: 307 AVAISYLDDHA 317
           AVAI YL+ +A
Sbjct: 402 AVAIEYLNKNA 412

Hydrolyzes certain amino acid conjugates of the plant growth regulator indole-3-acetic acid (IAA).
Oryza sativa subsp. japonica (taxid: 39947)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: -

>sp\|Q8H3C9\|ILL7_ORYSJ IAA-amino acid hydrolase ILR1-like 7 OS=Oryza sativa subsp. japonica GN=ILL7 PE=2 SV=1	Back alignment and function description

>sp\|Q851L6\|ILL4_ORYSJ IAA-amino acid hydrolase ILR1-like 4 OS=Oryza sativa subsp. japonica GN=ILL4 PE=2 SV=1	Back alignment and function description

>sp\|P54968\|ILR1_ARATH IAA-amino acid hydrolase ILR1 OS=Arabidopsis thaliana GN=ILR1 PE=1 SV=2	Back alignment and function description

>sp\|Q8H3C8\|ILL8_ORYSJ IAA-amino acid hydrolase ILR1-like 8 OS=Oryza sativa subsp. japonica GN=ILL8 PE=2 SV=1	Back alignment and function description

>sp\|Q8H3C7\|ILL9_ORYSJ IAA-amino acid hydrolase ILR1-like 9 OS=Oryza sativa subsp. japonica GN=ILL9 PE=2 SV=2	Back alignment and function description

>sp\|Q8S9S4\|ILL1_ORYSJ IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sativa subsp. japonica GN=ILL1 PE=2 SV=1	Back alignment and function description

>sp\|Q84XG9\|ILL1_ORYSI IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sativa subsp. indica GN=ILL1 PE=2 SV=1	Back alignment and function description

>sp\|Q5Z678\|ILL6_ORYSJ IAA-amino acid hydrolase ILR1-like 6 OS=Oryza sativa subsp. japonica GN=ILL6 PE=2 SV=1	Back alignment and function description

>sp\|O04373\|ILL4_ARATH IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsis thaliana GN=ILL4 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		321
224138406		478	iaa-amino acid hydrolase 4 [Populus tric	0.993	0.667	0.715	1e-151
269980525		430	IAA-amino acid hydrolase [Populus toment	0.993	0.741	0.718	1e-150
225440777		420	PREDICTED: IAA-amino acid hydrolase ILR1	0.987	0.754	0.683	1e-134
255579339		438	IAA-amino acid hydrolase ILR1 precursor,	0.993	0.728	0.640	1e-134
449437436		433	PREDICTED: IAA-amino acid hydrolase ILR1	0.984	0.729	0.658	1e-132
359482030		440	PREDICTED: IAA-amino acid hydrolase ILR1	0.990	0.722	0.620	1e-124
297740166		814	unnamed protein product [Vitis vinifera]	0.990	0.390	0.620	1e-123
225440779		438	PREDICTED: IAA-amino acid hydrolase ILR1	0.993	0.728	0.613	1e-123
449437434		435	PREDICTED: IAA-amino acid hydrolase ILR1	0.971	0.717	0.603	1e-119
147799846		414	hypothetical protein VITISV_017036 [Viti	0.950	0.736	0.596	1e-115

>gi\|224138406\|ref\|XP_002322806.1\| iaa-amino acid hydrolase 4 [Populus trichocarpa] gi\|222867436\|gb\|EEF04567.1\| iaa-amino acid hydrolase 4 [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  539 bits (1388), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 259/362 (71%), Positives = 289/362 (79%), Gaps = 43/362 (11%)

Query: 3   QLVRNELASLGIEYTWPFAKTGIVASVGSGVQPWFGLRADMDALPIQEMVEWEHKSKNNG 62
           QL+R+EL SLGIEY WPFAKTG+V S+GSG+QPWFGLRADMDALPIQEMVEWEHKSKNNG
Sbjct: 117 QLIRSELDSLGIEYKWPFAKTGVVGSIGSGLQPWFGLRADMDALPIQEMVEWEHKSKNNG 176

Query: 63  KMHACGHDVHTTMLLGAARLLKQRKDRLKGTVKLVFQPGEESYGGAYHMIKEGALEKFQG 122
           KMHACGHD H TMLLGAA+LL++ KD LKGTVKLVFQPGEESYGGAYHM+KEGAL+ FQG
Sbjct: 177 KMHACGHDAHVTMLLGAAKLLERMKDELKGTVKLVFQPGEESYGGAYHMLKEGALDNFQG 236

Query: 123 IFGLHVAPELPTGTIGSRPGPMLAGSMRFLAVIEGKGGHAAMPHATRDPVLAASFAILAL 182
           IFGLHVAPE+P GT+ SRPGPMLA S RF+A I+GKGGHAA P  TRDPV+AASFAILAL
Sbjct: 237 IFGLHVAPEIPVGTVDSRPGPMLAASGRFIATIKGKGGHAARPQDTRDPVVAASFAILAL 296

Query: 183 QQIVSRETDPLEARV-------------------------------------------IE 199
           QQIVSRETDPL+ARV                                           +E
Sbjct: 297 QQIVSRETDPLDARVVSVGFVEAGQAGNVIPETVRFGGSIRSMTTEGLVSLQQRVMQIVE 356

Query: 200 MQAAVHQCSATLDFMEEKLRPYPATVNDEEMYEHAKKVGTSLLGEANVHLLPMAMGAEDF 259
           MQAAVHQC+A+LDFMEEK+RPYP+TVNDE MY+HAK+VG +LLGE+NV L PM MGAEDF
Sbjct: 357 MQAAVHQCTASLDFMEEKMRPYPSTVNDEAMYKHAKQVGEALLGESNVLLAPMTMGAEDF 416

Query: 260 SFYSQKMAAALFMIGTRNETLKPVVRLHSPYLVIDEDVLPIGAALHAAVAISYLDDHAVE 319
           SFYSQKM AA F IGT+NET+K V RLHSPY VIDE+VL IGAA HAAVAISYLD HA++
Sbjct: 417 SFYSQKMKAAFFFIGTKNETVKSVKRLHSPYFVIDEEVLSIGAAFHAAVAISYLDGHAID 476

Query: 320 TQ 321
           TQ
Sbjct: 477 TQ 478

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|269980525\|gb\|ACZ56437.1\| IAA-amino acid hydrolase [Populus tomentosa]	Back alignment and taxonomy information

>gi\|225440777\|ref\|XP_002275838.1\| PREDICTED: IAA-amino acid hydrolase ILR1-like 3-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255579339\|ref\|XP_002530514.1\| IAA-amino acid hydrolase ILR1 precursor, putative [Ricinus communis] gi\|223529918\|gb\|EEF31846.1\| IAA-amino acid hydrolase ILR1 precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449437436\|ref\|XP_004136498.1\| PREDICTED: IAA-amino acid hydrolase ILR1-like 7-like [Cucumis sativus] gi\|449525449\|ref\|XP_004169730.1\| PREDICTED: IAA-amino acid hydrolase ILR1-like 7-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|359482030\|ref\|XP_002275866.2\| PREDICTED: IAA-amino acid hydrolase ILR1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297740166\|emb\|CBI30348.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225440779\|ref\|XP_002281507.1\| PREDICTED: IAA-amino acid hydrolase ILR1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449437434\|ref\|XP_004136497.1\| PREDICTED: IAA-amino acid hydrolase ILR1-like 7-like [Cucumis sativus] gi\|449525447\|ref\|XP_004169729.1\| PREDICTED: IAA-amino acid hydrolase ILR1-like 7-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|147799846\|emb\|CAN66058.1\| hypothetical protein VITISV_017036 [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		321
TAIR\|locus:2166557		428	ILL3 "AT5G54140" [Arabidopsis	0.613	0.460	0.583	1.7e-82
TAIR\|locus:2164976		439	ILL2 "AT5G56660" [Arabidopsis	0.610	0.446	0.576	2.5e-81
TAIR\|locus:2165076		438	ILL1 "AT5G56650" [Arabidopsis	0.610	0.447	0.561	1.1e-80
TAIR\|locus:2075382		442	ILR1 "AT3G02875" [Arabidopsis	0.610	0.443	0.642	4.1e-65
TAIR\|locus:2017607		440	IAR3 "AT1G51760" [Arabidopsis	0.610	0.445	0.607	1e-59
TAIR\|locus:2017577		435	ILL5 "AT1G51780" [Arabidopsis	0.610	0.450	0.596	1.1e-57
TIGR_CMR\|SPO_2468		387	SPO_2468 "amidohydrolase famil	0.619	0.514	0.473	5.4e-51
TAIR\|locus:2823614		464	ILL6 "IAA-leucine resistant (I	0.601	0.415	0.555	8.3e-51
TIGR_CMR\|SPO_2809		389	SPO_2809 "amidohydrolase famil	0.610	0.503	0.433	5.3e-45
UNIPROTKB\|Q47UG7		376	CPS_4917 "Amidohydrolase famil	0.591	0.505	0.484	6.7e-45

TAIR\|locus:2166557 ILL3 "AT5G54140" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 583 (210.3 bits), Expect = 1.7e-82, Sum P(2) = 1.7e-82
 Identities = 115/197 (58%), Positives = 143/197 (72%)

Query:     4 LVRNELASLGIEYTWPFAKTGIVASVGSGVQPWFGLRADMDALPIQEMVEWEHKSKNNGK 63
             L+R EL  LG+ Y++P AKTGIVA +GSG  P   LRADMDALP+QE+VEW+HKSK +GK
Sbjct:    64 LIRRELDELGVSYSYPVAKTGIVAQIGSGYPPVVALRADMDALPLQELVEWDHKSKIDGK 123

Query:    64 MHACGHDVHTTMLLGAARLLKQRKDRLKGTVKLVFQPGEESYGGAYHMIKEGALEKFQGI 123
             MHACGHD HTTMLLGAA+LL +RK  L GTV+L+FQP EE   GA+HMIKEGAL   + I
Sbjct:   124 MHACGHDSHTTMLLGAAKLLSKRKRMLNGTVRLLFQPAEEGGAGAFHMIKEGALGDSEAI 183

Query:   124 FGLHVAPELPTGTIGSRPGPMLAGSMRFLAVIEGKGGHAAMPHATRDPVLAASFAILALQ 183
             FG+HV   LPTG + +  GP LA +  F   + GK   ++  ++  DPVLAAS  ILALQ
Sbjct:   184 FGMHVHTGLPTGELATISGPALASTSIFSVRMSGKSPASSETYSCVDPVLAASSTILALQ 243

Query:   184 QIVSRETDPLEARVIEM 200
              I+SRE DPL + V+ +
Sbjct:   244 LIISREVDPLLSHVLSV 260

GO:0006508 "proteolysis" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=ISS

GO:0016787 "hydrolase activity" evidence=IEA

GO:0009850 "auxin metabolic process" evidence=ISS

GO:0010178 "IAA-amino acid conjugate hydrolase activity" evidence=ISS

TAIR\|locus:2164976 ILL2 "AT5G56660" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2165076 ILL1 "AT5G56650" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2075382 ILR1 "AT3G02875" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2017607 IAR3 "AT1G51760" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2017577 ILL5 "AT1G51780" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_2468 SPO_2468 "amidohydrolase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

TAIR\|locus:2823614 ILL6 "IAA-leucine resistant (ILR)-like gene 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_2809 SPO_2809 "amidohydrolase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

UNIPROTKB\|Q47UG7 CPS_4917 "Amidohydrolase family protein" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q851L5	ILL3_ORYSJ	3, ., 5, ., 1, ., -	0.5390	0.9563	0.7362	yes	no
Q8H3C9	ILL7_ORYSJ	3, ., 5, ., 1, ., -	0.5482	0.9813	0.6923	yes	no
P54968	ILR1_ARATH	3, ., 5, ., 1, ., -	0.5251	0.9813	0.7126	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.1	0.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ILL4	iaa-amino acid hydrolase 4 (403 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		321
cd08017		377	cd08017, M20_IAA_Hyd, M20 Peptidase Indole-3-aceti	1e-176
PLN02280		478	PLN02280, PLN02280, IAA-amino acid hydrolase	1e-135
cd03886		372	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 fa	1e-133
cd05666		373	cd05666, M20_Acy1_like1, M20 Peptidase Aminoacylas	1e-108
cd08019		372	cd08019, M20_Acy1_subfamily5, M20 Peptidase Aminoa	1e-105
PLN02693		437	PLN02693, PLN02693, IAA-amino acid hydrolase	1e-103
COG1473		392	COG1473, AbgB, Metal-dependent amidase/aminoacylas	1e-103
TIGR01891		363	TIGR01891, amidohydrolases, amidohydrolase	1e-100
cd05669		372	cd05669, M20_Acy1_YxeP_like, M20 Peptidase Aminoac	5e-94
cd05667		402	cd05667, M20_Acy1_like2, M20 Peptidase Aminoacylas	6e-82
cd08014		372	cd08014, M20_Acy1_like4, M20 Peptidase Aminoacylas	8e-82
cd05664		398	cd05664, M20_Acy1_like6, M20 Peptidase Aminoacylas	3e-73
cd08660		363	cd08660, M20_Acy1_like, M20 Peptidase Aminoacylase	1e-69
cd05670		367	cd05670, M20_Acy1_YkuR_like, M20 Peptidase Aminoac	3e-60
pfam01546		310	pfam01546, Peptidase_M20, Peptidase family M20/M25	4e-50
cd08018		365	cd08018, M20_Acy1_amhX_like, M20 Peptidase Aminoac	1e-46
cd05665		415	cd05665, M20_Acy1_IAAspH_bact, M20 Peptidases Amin	1e-42
cd05668		374	cd05668, M20_Acy1_like3, M20 Peptidase Aminoacylas	4e-37
cd03873		237	cd03873, Zinc_peptidase_like, Zinc peptidases M18,	1e-16
cd08659		365	cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylo	4e-14
cd03887		358	cd03887, M20_Acy1L2, M20 Peptidase Aminoacylase 1-	7e-14
cd05672		358	cd05672, M20_ACY1L2_like, M20 Peptidase Aminoacyla	2e-13
cd05673		434	cd05673, M20_Acy1L2_AbgB, M20 Peptidase Aminoacyla	8e-11
cd09849		388	cd09849, M20_Acy1L2_like_2, M20 Peptidase Aminoacy	3e-10
COG0624		409	COG0624, ArgE, Acetylornithine deacetylase/Succiny	1e-07
TIGR01910		375	TIGR01910, DapE-ArgE, acetylornithine deacetylase	2e-06
PRK08651		394	PRK08651, PRK08651, succinyl-diaminopimelate desuc	6e-06
cd08011		390	cd08011, M20_ArgE_DapE_like6, M20 Peptidases with	3e-05
cd08012		423	cd08012, M20_ArgE-related, M20 Peptidases with sim	6e-05
cd03896		359	cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspar	2e-04
cd05650		393	cd05650, M20_ArgE_DapE_like1, M20 Peptidases with	4e-04
cd05675		426	cd05675, M20_yscS_like, M20 Peptidase, carboxypept	0.001
PRK08588		377	PRK08588, PRK08588, succinyl-diaminopimelate desuc	0.002
pfam07687		107	pfam07687, M20_dimer, Peptidase dimerisation domai	0.003

>gnl\|CDD\|193564 cd08017, M20_IAA_Hyd, M20 Peptidase Indole-3-acetic acid amino acid hydrolase	Back alignment and domain information

 Score =  493 bits (1271), Expect = e-176
 Identities = 209/355 (58%), Positives = 248/355 (69%), Gaps = 43/355 (12%)

Query: 3   QLVRNELASLGIEYTWPFAKTGIVASVGSGVQPWFGLRADMDALPIQEMVEWEHKSKNNG 62
            L+R EL +LGI Y +P AKTGIVA++GSG  P   LRADMDALPIQE+VEWEHKSK +G
Sbjct: 23  ALIRRELDALGIPYRYPVAKTGIVATIGSGSPPVVALRADMDALPIQELVEWEHKSKVDG 82

Query: 63  KMHACGHDVHTTMLLGAARLLKQRKDRLKGTVKLVFQPGEESYGGAYHMIKEGALEKFQG 122
           KMHACGHD H TMLLGAA+LLK R+  LKGTV+L+FQP EE   GA  MIKEGAL+  + 
Sbjct: 83  KMHACGHDAHVTMLLGAAKLLKAREHLLKGTVRLLFQPAEEGGAGAKEMIKEGALDDVEA 142

Query: 123 IFGLHVAPELPTGTIGSRPGPMLAGSMRFLAVIEGKGGHAAMPHATRDPVLAASFAILAL 182
           IFG+HV P LPTGT+ SRPGP+LAG+ RF AVI GKGGHAAMPH T DPVLAAS A++AL
Sbjct: 143 IFGMHVDPALPTGTVASRPGPILAGAGRFEAVIRGKGGHAAMPHHTVDPVLAASSAVVAL 202

Query: 183 QQIVSRETDPLEARV-------------------------------------------IE 199
           QQ+VSRETDPL+++V                                           IE
Sbjct: 203 QQLVSRETDPLDSQVVSVTRFNGGHAFNVIPDSVTFGGTLRALTTEGFYRLRQRIEEVIE 262

Query: 200 MQAAVHQCSATLDFMEEKLRPYPATVNDEEMYEHAKKVGTSLLGEANVHLLPMAMGAEDF 259
            QAAVH+C+AT+DF E++  PYP TVNDE +YEHAKKV   LLG  NV + P  MGAEDF
Sbjct: 263 GQAAVHRCNATVDFSEDERPPYPPTVNDERLYEHAKKVAADLLGPENVKIAPPVMGAEDF 322

Query: 260 SFYSQKMAAALFMIGTRNETLKPVVRLHSPYLVIDEDVLPIGAALHAAVAISYLD 314
           +FY++K+  A F +G RNET   V  LHSPY  +DE+VLP+GAALHAAVA  YL+
Sbjct: 323 AFYAEKIPGAFFFLGIRNETAGSVHSLHSPYFFLDEEVLPVGAALHAAVAERYLN 377

Peptidase M20 family, Plant Aminoacyclase-1 indole-3-acetic-L-aspartic acid hydrolase (IAA-Asp hydrolase; IAAspH; IAAH; IAA amidohydrolase; EC 3.5.1.-) subfamily. IAAspH hydrolyzes indole-3-acetyl-N-aspartic acid (IAA or auxin) to indole-3-acetic acid. Genes encoding IAA-amidohydrolases were first cloned from Arabidopsis; ILR1, IAR3, ILL1 and ILL2 encode active IAA- amino acid hydrolases, and three additional amidohydrolase-like genes (ILL3, ILL5, ILL6) have been isolated. In higher plants, the growth regulator indole-3-acetic acid (IAA or auxin) is found both free and conjugated via amide bonding to a variety of amino acids and peptides, and via an ester linkage to carbohydrates. IAA-Asp conjugates are involved in homeostatic control, protection, storing and subsequent use of free IAA. IAA-Asp is also found in some plants as a unique intermediate for entering into IAA non-decarboxylative oxidative pathway. IAA amidohydrolase cleaves the amide bond between the auxin and the conjugated amino acid. Enterobacter agglomerans IAAspH has very strong enzyme activity and substrate specificity towards IAA-Asp, although its substrate affinity is weaker compared to Arabidopsis enzymes of the ILR1 gene family. Enhanced IAA-hydrolase activity has been observed during clubroot disease in Chinese cabbage. Length = 377

>gnl\|CDD\|215158 PLN02280, PLN02280, IAA-amino acid hydrolase	Back alignment and domain information

>gnl\|CDD\|193507 cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family	Back alignment and domain information

>gnl\|CDD\|193542 cd05666, M20_Acy1_like1, M20 Peptidase Aminoacylase 1 subfamily	Back alignment and domain information

>gnl\|CDD\|193566 cd08019, M20_Acy1_subfamily5, M20 Peptidase Aminoacylase 1 subfamily	Back alignment and domain information

>gnl\|CDD\|178296 PLN02693, PLN02693, IAA-amino acid hydrolase	Back alignment and domain information

>gnl\|CDD\|224390 COG1473, AbgB, Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|233621 TIGR01891, amidohydrolases, amidohydrolase	Back alignment and domain information

>gnl\|CDD\|193545 cd05669, M20_Acy1_YxeP_like, M20 Peptidase Aminoacyclase-1 YxeP-like proteins, including YxeP, YtnL, YjiB and HipO2	Back alignment and domain information

>gnl\|CDD\|193543 cd05667, M20_Acy1_like2, M20 Peptidase Aminoacylase 1 subfamily	Back alignment and domain information

>gnl\|CDD\|193562 cd08014, M20_Acy1_like4, M20 Peptidase Aminoacylase 1 subfamily	Back alignment and domain information

>gnl\|CDD\|193540 cd05664, M20_Acy1_like6, M20 Peptidase Aminoacylase 1 subfamily	Back alignment and domain information

>gnl\|CDD\|193571 cd08660, M20_Acy1_like, M20 Peptidase Aminoacylase 1-like family	Back alignment and domain information

>gnl\|CDD\|193546 cd05670, M20_Acy1_YkuR_like, M20 Peptidase Aminoacyclase-1 YkuR-like proteins, including YkuR and Ama/HipO/HyuC proteins	Back alignment and domain information

>gnl\|CDD\|216562 pfam01546, Peptidase_M20, Peptidase family M20/M25/M40	Back alignment and domain information

>gnl\|CDD\|193565 cd08018, M20_Acy1_amhX_like, M20 Peptidase Aminoacylase 1 amhX_like subfamily	Back alignment and domain information

>gnl\|CDD\|193541 cd05665, M20_Acy1_IAAspH_bact, M20 Peptidases Aminoacyclase-1 indole-3-acetic-L-aspartic acid hydrolase from bacteria and archaea	Back alignment and domain information

>gnl\|CDD\|193544 cd05668, M20_Acy1_like3, M20 Peptidase Aminoacylase 1 subfamily	Back alignment and domain information

>gnl\|CDD\|193495 cd03873, Zinc_peptidase_like, Zinc peptidases M18, M20, M28, and M42	Back alignment and domain information

>gnl\|CDD\|193570 cd08659, M20_ArgE_DapE_like, Peptidase M20 acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE)-like	Back alignment and domain information

>gnl\|CDD\|193508 cd03887, M20_Acy1L2, M20 Peptidase Aminoacylase 1-like protein 2, amidohydrolase family	Back alignment and domain information

>gnl\|CDD\|193547 cd05672, M20_ACY1L2_like, M20 Peptidase Aminoacylase 1-like protein 2-like, amidohydrolase subfamily	Back alignment and domain information

>gnl\|CDD\|193548 cd05673, M20_Acy1L2_AbgB, M20 Peptidase Aminoacylase 1-like protein 2 aminobenzoyl-glutamate utilization protein B subfamily	Back alignment and domain information

>gnl\|CDD\|193573 cd09849, M20_Acy1L2_like_2, M20 Peptidase Aminoacylase 1-like protein 2, amidohydrolase family	Back alignment and domain information

>gnl\|CDD\|223697 COG0624, ArgE, Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|233632 TIGR01910, DapE-ArgE, acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase	Back alignment and domain information

>gnl\|CDD\|236323 PRK08651, PRK08651, succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>gnl\|CDD\|193559 cd08011, M20_ArgE_DapE_like6, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases	Back alignment and domain information

>gnl\|CDD\|193560 cd08012, M20_ArgE-related, M20 Peptidases with simlarity to acetylornithine deacetylases	Back alignment and domain information

>gnl\|CDD\|193516 cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspartic acid) hydrolase-like proteins	Back alignment and domain information

>gnl\|CDD\|193527 cd05650, M20_ArgE_DapE_like1, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases	Back alignment and domain information

>gnl\|CDD\|193550 cd05675, M20_yscS_like, M20 Peptidase, carboxypeptidase yscS-like	Back alignment and domain information

>gnl\|CDD\|181490 PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>gnl\|CDD\|219515 pfam07687, M20_dimer, Peptidase dimerisation domain	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		321
PLN02280		478	IAA-amino acid hydrolase	100.0
PLN02693		437	IAA-amino acid hydrolase	100.0
COG1473		392	AbgB Metal-dependent amidase/aminoacylase/carboxyp	100.0
TIGR01891		363	amidohydrolases amidohydrolase. This model represe	100.0
PRK08588		377	succinyl-diaminopimelate desuccinylase; Reviewed	100.0
PRK06915		422	acetylornithine deacetylase; Validated	100.0
PRK13013		427	succinyl-diaminopimelate desuccinylase; Reviewed	100.0
PRK13009		375	succinyl-diaminopimelate desuccinylase; Reviewed	100.0
PRK07338		402	hypothetical protein; Provisional	100.0
PRK13983		400	diaminopimelate aminotransferase; Provisional	100.0
PRK06133		410	glutamate carboxypeptidase; Reviewed	100.0
TIGR01246		370	dapE_proteo succinyl-diaminopimelate desuccinylase	100.0
PRK07473		376	carboxypeptidase; Provisional	100.0
PRK13381		404	peptidase T; Provisional	100.0
PRK05469		408	peptidase T; Provisional	100.0
TIGR01882		410	peptidase-T peptidase T. This model represents a t	100.0
TIGR03320		395	ygeY M20/DapE family protein YgeY. Members of this	100.0
TIGR01910		375	DapE-ArgE acetylornithine deacetylase or succinyl-	100.0
TIGR01880		400	Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase	100.0
PRK08651		394	succinyl-diaminopimelate desuccinylase; Reviewed	100.0
PRK06446		436	hypothetical protein; Provisional	100.0
PRK13004		399	peptidase; Reviewed	100.0
TIGR01892		364	AcOrn-deacetyl acetylornithine deacetylase (ArgE).	100.0
TIGR03526		395	selenium_YgeY putative selenium metabolism hydrola	100.0
PRK05111		383	acetylornithine deacetylase; Provisional	100.0
PRK07522		385	acetylornithine deacetylase; Provisional	100.0
PRK06837		427	acetylornithine deacetylase; Provisional	100.0
PRK08652		347	acetylornithine deacetylase; Provisional	100.0
PRK08596		421	acetylornithine deacetylase; Validated	100.0
PRK09133		472	hypothetical protein; Provisional	100.0
PRK12891		414	allantoate amidohydrolase; Reviewed	100.0
TIGR01883		361	PepT-like peptidase T-like protein. This model rep	100.0
PRK09290		413	allantoate amidohydrolase; Reviewed	100.0
PRK12892		412	allantoate amidohydrolase; Reviewed	100.0
PRK08262		486	hypothetical protein; Provisional	100.0
PRK04443		348	acetyl-lysine deacetylase; Provisional	100.0
TIGR01886		466	dipeptidase dipeptidase PepV. This model represent	100.0
PRK07906		426	hypothetical protein; Provisional	100.0
PRK08201		456	hypothetical protein; Provisional	100.0
PRK00466		346	acetyl-lysine deacetylase; Validated	100.0
PRK07318		466	dipeptidase PepV; Reviewed	100.0
COG0624		409	ArgE Acetylornithine deacetylase/Succinyl-diaminop	100.0
PRK12893		412	allantoate amidohydrolase; Reviewed	100.0
PRK08737		364	acetylornithine deacetylase; Provisional	100.0
PRK12890		414	allantoate amidohydrolase; Reviewed	100.0
PRK07907		449	hypothetical protein; Provisional	100.0
PRK09104		464	hypothetical protein; Validated	100.0
PRK07079		469	hypothetical protein; Provisional	100.0
PRK13007		352	succinyl-diaminopimelate desuccinylase; Reviewed	100.0
TIGR01879		401	hydantase amidase, hydantoinase/carbamoylase famil	100.0
TIGR01900		373	dapE-gram_pos succinyl-diaminopimelate desuccinyla	100.0
PRK06156		520	hypothetical protein; Provisional	100.0
PRK07205		444	hypothetical protein; Provisional	100.0
TIGR03176		406	AllC allantoate amidohydrolase. This enzyme cataly	100.0
TIGR01902		336	dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine d	100.0
PRK13799		591	unknown domain/N-carbamoyl-L-amino acid hydrolase	100.0
TIGR01887		447	dipeptidaselike dipeptidase, putative. This model	100.0
PRK13590		591	putative bifunctional OHCU decarboxylase/allantoat	100.0
PRK08554		438	peptidase; Reviewed	100.0
TIGR01893		477	aa-his-dipept aminoacyl-histidine dipeptidase.	100.0
PRK15026		485	aminoacyl-histidine dipeptidase; Provisional	100.0
KOG2275		420	consensus Aminoacylase ACY1 and related metalloexo	100.0
PF01546		189	Peptidase_M20: Peptidase family M20/M25/M40 This f	99.89
KOG2276		473	consensus Metalloexopeptidases [Amino acid transpo	99.88
COG2195		414	PepD Di- and tripeptidases [Amino acid transport a	99.82
PRK09961		344	exoaminopeptidase; Provisional	99.58
PRK10199		346	alkaline phosphatase isozyme conversion aminopepti	99.56
TIGR03106		343	trio_M42_hydro hydrolase, peptidase M42 family. Th	99.51
TIGR03107		350	glu_aminopep glutamyl aminopeptidase. This model r	99.49
COG4187		553	RocB Arginine degradation protein (predicted deacy	99.49
COG1363		355	FrvX Cellulase M and related proteins [Carbohydrat	99.43
PRK09864		356	putative peptidase; Provisional	99.39
PF05343		292	Peptidase_M42: M42 glutamyl aminopeptidase; InterP	98.82
PF04389		179	Peptidase_M28: Peptidase family M28; InterPro: IPR	98.36
PF07687		111	M20_dimer: Peptidase dimerisation domain This fami	98.34
KOG2194		834	consensus Aminopeptidases of the M20 family [Postt	98.13
COG2234		435	Iap Predicted aminopeptidases [General function pr	96.94
KOG3946		338	consensus Glutaminyl cyclase [Posttranslational mo	96.71
KOG2195		702	consensus Transferrin receptor and related protein	96.42
PF05450		234	Nicastrin: Nicastrin; InterPro: IPR008710 Nicastri	96.17
KOG2526		555	consensus Predicted aminopeptidases - M20/M25/M40	95.87
PRK02256		462	putative aminopeptidase 1; Provisional	91.22
PRK02813		428	putative aminopeptidase 2; Provisional	86.68
PTZ00371		465	aspartyl aminopeptidase; Provisional	86.14

>PLN02280 IAA-amino acid hydrolase	Back alignment and domain information

Probab=100.00  E-value=8.7e-54  Score=402.66  Aligned_cols=316  Identities=59%  Similarity=0.929  Sum_probs=262.8

Q ss_pred             ChHHHHHHHHhCCCceeccCCCceEEEEecCCCCCEEEEEeccccCCCCCCCCCCccccCCCceecCCchHHHHHHHHHH
Q 036756            1 AGQLVRNELASLGIEYTWPFAKTGIVASVGSGVQPWFGLRADMDALPIQEMVEWEHKSKNNGKMHACGHDVHTTMLLGAA   80 (321)
Q Consensus         1 ~a~~l~~~L~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~~pf~~~~~G~~~g~g~kg~~aa~l~a~   80 (321)
                      +++||+++|+++||++++..+.+|++|+++++++|+|+|+|||||||+++.++|+|.++++|++||||||+++|++|+|+
T Consensus       119 t~~~i~~~L~~~G~~~~~~~~~~~vva~~g~~~~~~I~l~gh~DaVP~~e~~~w~~~p~~~G~~h~cGhd~~~A~~l~a~  198 (478)
T PLN02280        119 TSELVRSELDRMGIMYRYPLAKTGIRAWIGTGGPPFVAVRADMDALPIQEAVEWEHKSKVAGKMHACGHDAHVAMLLGAA  198 (478)
T ss_pred             HHHHHHHHHHHCCCeEEecCCCCEEEEEECCCCCCEEEEEEecCCCcccCCCCCCCCCCCCCeEEeCCCcHHHHHHHHHH
Confidence            37899999999999987655678999999544458999999999999988788999888899999999999999999999


Q ss_pred             HHHHhccCCCCceEEEEEecCCCccchhhhHHHcCCCCCcceEEEeccCCCCCceeEEeeccccccceeEEEEEEEecCC
Q 036756           81 RLLKQRKDRLKGTVKLVFQPGEESYGGAYHMIKEGALEKFQGIFGLHVAPELPTGTIGSRPGPMLAGSMRFLAVIEGKGG  160 (321)
Q Consensus        81 ~~l~~~~~~~~~~i~~~~~~dEE~g~G~~~l~~~g~~~~~d~~i~~~~~~~~p~g~~~~~~g~~~~g~~~~~i~v~G~~a  160 (321)
                      ++|++.+.+++++|.|+|++|||++.|+++|+++|.++++|+++++|+.+.+|++.+....+..++|..+++|+++|+++
T Consensus       199 ~~L~~~~~~~~g~V~~if~pdEE~g~Ga~~li~~g~~~~~d~~~~~h~~~~~p~g~ig~~~~~~~~G~~~~~I~v~Gk~a  278 (478)
T PLN02280        199 KILKSREHLLKGTVVLLFQPAEEAGNGAKRMIGDGALDDVEAIFAVHVSHEHPTAVIGSRPGPLLAGCGFFRAVISGKKG  278 (478)
T ss_pred             HHHHhccccCCceEEEEecccccccchHHHHHHCCCCcCCCEEEEEecCCCCCCceeEecccccccceeEEEEEEECcch
Confidence            99988777789999999999999988999999999887889999999877678887666667777899999999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhhcccCCCch----------HH---------------------------------H
Q 036756          161 HAAMPHATRDPVLAASFAILALQQIVSRETDPLE----------AR---------------------------------V  197 (321)
Q Consensus       161 Hss~p~~g~nAi~~~~~~i~~l~~~~~~~~~p~~----------~~---------------------------------~  197 (321)
                      |+|.|+.|+|||..+++++.+|+++..+..+|..          ++                                 +
T Consensus       279 Has~P~~G~NAI~~aa~li~~l~~l~~r~~~~~~~~tvnvg~I~GG~~~NvIPd~~~l~~diR~~~~e~~e~l~~~I~~~  358 (478)
T PLN02280        279 RAGSPHHSVDLILAASAAVISLQGIVSREANPLDSQVVSVTTMDGGNNLDMIPDTVVLGGTFRAFSNTSFYQLLKRIQEV  358 (478)
T ss_pred             hcCCcccCcCHHHHHHHHHHHHHHHHhcccCCCCCcEEEEEEEEccCCCCEeCCEEEEEEEEecCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999887533222110          00                                 2


Q ss_pred             HHHHHHHhCCeEEEEEeccccCCCCCccCCHHHHHHHHHHHHhhcCCcceeccCCCcCCCcHHHHHHHhhheEEEecccC
Q 036756          198 IEMQAAVHQCSATLDFMEEKLRPYPATVNDEEMYEHAKKVGTSLLGEANVHLLPMAMGAEDFSFYSQKMAAALFMIGTRN  277 (321)
Q Consensus       198 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~D~~~~~~~~p~~~~~~G~~~  277 (321)
                      ++.++..+++++++++.......+|++.+++++++.+++++.+++|.+.+....+..+++|+++|.+.+|++++++|+++
T Consensus       359 ~~~~a~~~g~~~~v~~~~~~~~~~pp~~n~~~l~~~~~~~a~~~~G~~~~~~~~~~~g~tD~~~~~~~vP~i~~glG~~~  438 (478)
T PLN02280        359 IVEQAGVFRCSATVDFFEKQNTIYPPTVNNDAMYEHVRKVAIDLLGPANFTVVPPMMGAEDFSFYSQVVPAAFYYIGIRN  438 (478)
T ss_pred             HHHHHHHhCCeEEEEEeccccCCCCCccCCHHHHHHHHHHHHHhcCccccccCCCCeeechHHHHHhhCCEEEEEEeecC
Confidence            33334456788777752111235788999999999999998887675533222456789999999989999999889876


Q ss_pred             CCCCCCCCCCCCCCcCCCCcHHHHHHHHHHHHHHHhccc
Q 036756          278 ETLKPVVRLHSPYLVIDEDVLPIGAALHAAVAISYLDDH  316 (321)
Q Consensus       278 ~~~g~~~~~H~~~E~v~~~~l~~~~~~~~~~~~~~~~~~  316 (321)
                      .+||....+|+++|++++++|..++++|+.++.+|+..+
T Consensus       439 ~~~G~~~~~Htp~e~id~~~L~~~~~~~~~~~~~~l~~~  477 (478)
T PLN02280        439 ETLGSTHTGHSPYFMIDEDVLPIGAAVHAAIAERYLIEH  477 (478)
T ss_pred             CCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHhhc
Confidence            555666689999999999999999999999999998753

>PLN02693 IAA-amino acid hydrolase	Back alignment and domain information

>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]	Back alignment and domain information

>TIGR01891 amidohydrolases amidohydrolase	Back alignment and domain information

>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>PRK06915 acetylornithine deacetylase; Validated	Back alignment and domain information

>PRK13013 succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>PRK13009 succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>PRK07338 hypothetical protein; Provisional	Back alignment and domain information

>PRK13983 diaminopimelate aminotransferase; Provisional	Back alignment and domain information

>PRK06133 glutamate carboxypeptidase; Reviewed	Back alignment and domain information

>TIGR01246 dapE_proteo succinyl-diaminopimelate desuccinylase, proteobacterial clade	Back alignment and domain information

>PRK07473 carboxypeptidase; Provisional	Back alignment and domain information

>PRK13381 peptidase T; Provisional	Back alignment and domain information

>PRK05469 peptidase T; Provisional	Back alignment and domain information

>TIGR01882 peptidase-T peptidase T	Back alignment and domain information

>TIGR03320 ygeY M20/DapE family protein YgeY	Back alignment and domain information

>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase	Back alignment and domain information

>TIGR01880 Ac-peptdase-euk N-acyl-L-amino-acid amidohydrolase	Back alignment and domain information

>PRK08651 succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>PRK06446 hypothetical protein; Provisional	Back alignment and domain information

>PRK13004 peptidase; Reviewed	Back alignment and domain information

>TIGR01892 AcOrn-deacetyl acetylornithine deacetylase (ArgE)	Back alignment and domain information

>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase	Back alignment and domain information

>PRK05111 acetylornithine deacetylase; Provisional	Back alignment and domain information

>PRK07522 acetylornithine deacetylase; Provisional	Back alignment and domain information

>PRK06837 acetylornithine deacetylase; Provisional	Back alignment and domain information

>PRK08652 acetylornithine deacetylase; Provisional	Back alignment and domain information

>PRK08596 acetylornithine deacetylase; Validated	Back alignment and domain information

>PRK09133 hypothetical protein; Provisional	Back alignment and domain information

>PRK12891 allantoate amidohydrolase; Reviewed	Back alignment and domain information

>TIGR01883 PepT-like peptidase T-like protein	Back alignment and domain information

>PRK09290 allantoate amidohydrolase; Reviewed	Back alignment and domain information

>PRK12892 allantoate amidohydrolase; Reviewed	Back alignment and domain information

>PRK08262 hypothetical protein; Provisional	Back alignment and domain information

>PRK04443 acetyl-lysine deacetylase; Provisional	Back alignment and domain information

>TIGR01886 dipeptidase dipeptidase PepV	Back alignment and domain information

>PRK07906 hypothetical protein; Provisional	Back alignment and domain information

>PRK08201 hypothetical protein; Provisional	Back alignment and domain information

>PRK00466 acetyl-lysine deacetylase; Validated	Back alignment and domain information

>PRK07318 dipeptidase PepV; Reviewed	Back alignment and domain information

>COG0624 ArgE Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases [Amino acid transport and metabolism]	Back alignment and domain information

>PRK12893 allantoate amidohydrolase; Reviewed	Back alignment and domain information

>PRK08737 acetylornithine deacetylase; Provisional	Back alignment and domain information

>PRK12890 allantoate amidohydrolase; Reviewed	Back alignment and domain information

>PRK07907 hypothetical protein; Provisional	Back alignment and domain information

>PRK09104 hypothetical protein; Validated	Back alignment and domain information

>PRK07079 hypothetical protein; Provisional	Back alignment and domain information

>PRK13007 succinyl-diaminopimelate desuccinylase; Reviewed	Back alignment and domain information

>TIGR01879 hydantase amidase, hydantoinase/carbamoylase family	Back alignment and domain information

>TIGR01900 dapE-gram_pos succinyl-diaminopimelate desuccinylase	Back alignment and domain information

>PRK06156 hypothetical protein; Provisional	Back alignment and domain information

>PRK07205 hypothetical protein; Provisional	Back alignment and domain information

>TIGR03176 AllC allantoate amidohydrolase	Back alignment and domain information

>TIGR01902 dapE-lys-deAc N-acetyl-ornithine/N-acetyl-lysine deacetylase	Back alignment and domain information

>PRK13799 unknown domain/N-carbamoyl-L-amino acid hydrolase fusion protein; Provisional	Back alignment and domain information

>TIGR01887 dipeptidaselike dipeptidase, putative	Back alignment and domain information

>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional	Back alignment and domain information

>PRK08554 peptidase; Reviewed	Back alignment and domain information

>TIGR01893 aa-his-dipept aminoacyl-histidine dipeptidase	Back alignment and domain information

>PRK15026 aminoacyl-histidine dipeptidase; Provisional	Back alignment and domain information

>KOG2275 consensus Aminoacylase ACY1 and related metalloexopeptidases [Amino acid transport and metabolism]	Back alignment and domain information

>PF01546 Peptidase_M20: Peptidase family M20/M25/M40 This family only corresponds to M20 family; InterPro: IPR002933 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG2276 consensus Metalloexopeptidases [Amino acid transport and metabolism]	Back alignment and domain information

>COG2195 PepD Di- and tripeptidases [Amino acid transport and metabolism]	Back alignment and domain information

>PRK09961 exoaminopeptidase; Provisional	Back alignment and domain information

>PRK10199 alkaline phosphatase isozyme conversion aminopeptidase; Provisional	Back alignment and domain information

>TIGR03106 trio_M42_hydro hydrolase, peptidase M42 family	Back alignment and domain information

>TIGR03107 glu_aminopep glutamyl aminopeptidase	Back alignment and domain information

>COG4187 RocB Arginine degradation protein (predicted deacylase) [Amino acid transport and metabolism]	Back alignment and domain information

>COG1363 FrvX Cellulase M and related proteins [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK09864 putative peptidase; Provisional	Back alignment and domain information

>PF05343 Peptidase_M42: M42 glutamyl aminopeptidase; InterPro: IPR008007 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF04389 Peptidase_M28: Peptidase family M28; InterPro: IPR007484 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []	Back alignment and domain information

>KOG2194 consensus Aminopeptidases of the M20 family [Posttranslational modification, protein turnover, chaperones; General function prediction only]	Back alignment and domain information

>COG2234 Iap Predicted aminopeptidases [General function prediction only]	Back alignment and domain information

>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]	Back alignment and domain information

>PF05450 Nicastrin: Nicastrin; InterPro: IPR008710 Nicastrin and presenilin are two major components of the gamma-secretase complex, which executes the intramembrane proteolysis of type I integral membrane proteins such as the amyloid precursor protein (APP) and Notch	Back alignment and domain information

>KOG2526 consensus Predicted aminopeptidases - M20/M25/M40 family [Amino acid transport and metabolism]	Back alignment and domain information

>PRK02256 putative aminopeptidase 1; Provisional	Back alignment and domain information

>PRK02813 putative aminopeptidase 2; Provisional	Back alignment and domain information

>PTZ00371 aspartyl aminopeptidase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		321
1xmb_A		418	X-ray Structure Of Iaa-aminoacid Hydrolase From Ara		7e-84
1ysj_A		404	Crystal Structure Of Bacillus Subtilis Yxep Protein		2e-46
4ewt_A		392	The Crystal Structure Of A Putative Aminohydrolase		8e-36
3io1_A		445	Crystal Structure Of Aminobenzoyl-Glutamate Utiliza		1e-13

>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From Arabidopsis Thaliana Gene At5g56660 Length = 418

Back alignment and structure

Iteration: 1

Score = 306 bits (785), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 163/357 (45%), Positives = 225/357 (63%), Gaps = 44/357 (12%) Query: 3 QLVRNELASLGIEYTWPFAKTGIVASVGSGVQPWFGLRADMDALPIQEMVEWEHKSKNNG 62 +L+R+EL +GI+Y +P A TG++ +G+G P+ LRADMDALPIQE VEWEHKSK G Sbjct: 52 KLIRSELELIGIKYRYPVAITGVIGYIGTGEPPFVALRADMDALPIQEGVEWEHKSKIAG 111 Query: 63 KMHACGHDVHTTMLLGAARLLKQRKDRLKGTVKLVFQPGEESYGGAYHMIKEGALEKFQG 122 KMHACGHD H TMLLGAA++L + + L+GTV L+FQP EE GA M +EGAL+ + Sbjct: 112 KMHACGHDGHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEA 171 Query: 123 IFGLHVAPELPTGTIGSRPGPMLAGSMRFLAVIEGKGGHAAMPHATRDPVLAASFAILAL 182 IFG+H++ +P G SR G LAG+ F AVI GKGGHAA+P T DPV+AAS +L+L Sbjct: 172 IFGIHLSARIPFGKAASRAGSFLAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSL 231 Query: 183 QQIVSRETDPLEARVIEM-----------------------------------------Q 201 QQ+VSRETDPL+++V+ + Q Sbjct: 232 QQLVSRETDPLDSKVVTVSKVNGGNAFNVIPDSITIGGTLRAFTGFTQLQQRVKEVITKQ 291 Query: 202 AAVHQCSATLDFMEEKLRPYPATVNDEEMYEHAKKVGTSLLG-EANVHLLPMAMGAEDFS 260 AAVH+C+A+++ P P TVN++++Y+ KKV LLG EA V P+ MG+EDFS Sbjct: 292 AAVHRCNASVNLTPNGREPMPPTVNNKDLYKQFKKVVRDLLGQEAFVEAAPV-MGSEDFS 350 Query: 261 FYSQKMAAALFMIGTRNETLKPVVRLHSPYLVIDEDVLPIGAALHAAVAISYLDDHA 317 ++++ + ++G ++ET HSP I+EDVLP GAA+HA++A+ YL + A Sbjct: 351 YFAETIPGHFSLLGMQDET-NGYASSHSPLYRINEDVLPYGAAIHASMAVQYLKEKA 406

PyMOL of 1xmb

>pdb|1YSJ|A Chain A, Crystal Structure Of Bacillus Subtilis Yxep Protein (Apc1829), A Dinuclear Metal Binding Peptidase From M20 Family Length = 404

Back alignment and structure

>pdb|4EWT|A Chain A, The Crystal Structure Of A Putative Aminohydrolase From Methicillin Resistant Staphylococcus Aureus Length = 392

Back alignment and structure

>pdb|3IO1|A Chain A, Crystal Structure Of Aminobenzoyl-Glutamate Utilization Protein From Klebsiella Pneumoniae Length = 445

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		321
1xmb_A		418	IAA-amino acid hydrolase homolog 2; structural gen	1e-164
1ysj_A		404	Protein YXEP; M20 family peptidase, dinuclear meta	1e-138
3io1_A		445	Aminobenzoyl-glutamate utilization protein; peptid	1e-114
3ram_A		394	HMRA protein; two-domain, catalytic (alpha-beta-al	4e-16
1cg2_A		393	Carboxypeptidase G2; metallocarboxypeptidase, hydr	2e-09
3pfo_A		433	Putative acetylornithine deacetylase; metal bindin	8e-08
3tx8_A		369	Succinyl-diaminopimelate desuccinylase; peptidase,	1e-07
3ct9_A		356	Acetylornithine deacetylase; NP_812461.1, A putati	5e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A Length = 418	Back alignment and structure

 Score =  463 bits (1195), Expect = e-164
 Identities = 160/358 (44%), Positives = 220/358 (61%), Gaps = 42/358 (11%)

Query: 3   QLVRNELASLGIEYTWPFAKTGIVASVGSGVQPWFGLRADMDALPIQEMVEWEHKSKNNG 62
           +L+R+EL  +GI+Y +P A TG++  +G+G  P+  LRADMDALPIQE VEWEHKSK  G
Sbjct: 52  KLIRSELELIGIKYRYPVAITGVIGYIGTGEPPFVALRADMDALPIQEGVEWEHKSKIAG 111

Query: 63  KMHACGHDVHTTMLLGAARLLKQRKDRLKGTVKLVFQPGEESYGGAYHMIKEGALEKFQG 122
           KMHACGHD H TMLLGAA++L + +  L+GTV L+FQP EE   GA  M +EGAL+  + 
Sbjct: 112 KMHACGHDGHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEA 171

Query: 123 IFGLHVAPELPTGTIGSRPGPMLAGSMRFLAVIEGKGGHAAMPHATRDPVLAASFAILAL 182
           IFG+H++  +P G   SR G  LAG+  F AVI GKGGHAA+P  T DPV+AAS  +L+L
Sbjct: 172 IFGIHLSARIPFGKAASRAGSFLAGAGVFEAVITGKGGHAAIPQHTIDPVVAASSIVLSL 231

Query: 183 QQIVSRETDPLEA-----------------------------------------RVIEMQ 201
           QQ+VSRETDPL++                                          VI  Q
Sbjct: 232 QQLVSRETDPLDSKVVTVSKVNGGNAFNVIPDSITIGGTLRAFTGFTQLQQRVKEVITKQ 291

Query: 202 AAVHQCSATLDFMEEKLRPYPATVNDEEMYEHAKKVGTSLLGEANVHLLPMAMGAEDFSF 261
           AAVH+C+A+++       P P TVN++++Y+  KKV   LLG+         MG+EDFS+
Sbjct: 292 AAVHRCNASVNLTPNGREPMPPTVNNKDLYKQFKKVVRDLLGQEAFVEAAPVMGSEDFSY 351

Query: 262 YSQKMAAALFMIGTRNETLKPVVRLHSPYLVIDEDVLPIGAALHAAVAISYLDDHAVE 319
           +++ +     ++G ++ET       HSP   I+EDVLP GAA+HA++A+ YL + A +
Sbjct: 352 FAETIPGHFSLLGMQDET-NGYASSHSPLYRINEDVLPYGAAIHASMAVQYLKEKASK 408

PyMOL of 1xmb

>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1 Length = 404	Back alignment and structure

>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp} Length = 445	Back alignment and structure

>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus} Length = 394	Back alignment and structure

>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1 Length = 393	Back alignment and structure

>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris} Length = 433	Back alignment and structure

>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum} Length = 369	Back alignment and structure

>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482} Length = 356	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		321
3io1_A		445	Aminobenzoyl-glutamate utilization protein; peptid	100.0
1xmb_A		418	IAA-amino acid hydrolase homolog 2; structural gen	100.0
1ysj_A		404	Protein YXEP; M20 family peptidase, dinuclear meta	100.0
3ram_A		394	HMRA protein; two-domain, catalytic (alpha-beta-al	100.0
1vgy_A		393	Succinyl-diaminopimelate desuccinylase; structural	100.0
3isz_A		377	Succinyl-diaminopimelate desuccinylase; DAPE, Zn-b	100.0
3pfo_A		433	Putative acetylornithine deacetylase; metal bindin	100.0
1cg2_A		393	Carboxypeptidase G2; metallocarboxypeptidase, hydr	100.0
3rza_A		396	Tripeptidase; phosphorylase/hydrolase-like, struct	100.0
3ife_A		434	Peptidase T; metallopeptidase, aminopeptidase, hyd	100.0
3gb0_A		373	Peptidase T; NP_980509.1, aminopeptidase PEPT, pep	100.0
3dlj_A		485	Beta-Ala-His dipeptidase; CNDP1, carnosine dipepti	100.0
2f7v_A		369	Aectylcitrulline deacetylase; alpha/beta, hydrolas	100.0
3pfe_A		472	Succinyl-diaminopimelate desuccinylase; metal bind	100.0
1fno_A		417	Peptidase T; metallo peptidase, protease, hydrolas	100.0
3ct9_A		356	Acetylornithine deacetylase; NP_812461.1, A putati	100.0
3khx_A		492	Putative dipeptidase sacol1801; DAPE, metallopepti	100.0
3tx8_A		369	Succinyl-diaminopimelate desuccinylase; peptidase,	100.0
2zog_A		479	Cytosolic non-specific dipeptidase; metallopeptida	100.0
2pok_A		481	Peptidase, M20/M25/M40 family; M20 family peptidas	100.0
3n5f_A		408	L-carbamoylase, N-carbamoyl-L-amino acid hydrolase	100.0
1z2l_A		423	Allantoate amidohydrolase; ALLC, purine cataboli a	100.0
2rb7_A		364	Peptidase, M20/M25/M40 family; YP_387682.1, CO-cat	100.0
2v8h_A		474	Beta-alanine synthase; amidohydrolase, alpha and b	100.0
2qyv_A		487	XAA-His dipeptidase; YP_718209.1, structural genom	100.0
1lfw_A		470	PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bac	100.0
3mru_A		490	Aminoacyl-histidine dipeptidase; metalloprotease,	100.0
3t68_A		268	Succinyl-diaminopimelate desuccinylase; DAPE, csgi	99.97
4h2k_A		269	Succinyl-diaminopimelate desuccinylase; DAPE, MCSG	99.97
2fvg_A		340	Endoglucanase; TM1049, structural genomics, joint	99.93
1q7l_A		198	Aminoacylase-1; catalysis, enzyme dimerization, si	99.9
2wyr_A		332	Cobalt-activated peptidase TET1; hydrolase, large	99.88
1vhe_A		373	Aminopeptidase/glucanase homolog; structural genom	99.87
2gre_A		349	Deblocking aminopeptidase; structural genomi prote	99.84
1y0y_A		353	FRV operon protein FRVX; aminopeptidase, PDZ, hydr	99.84
2wzn_A		354	TET3, 354AA long hypothetical operon protein FRV;	99.81
1vho_A		346	Endoglucanase; structural genomics, unknown functi	99.79
1ylo_A		348	Hypothetical protein SF2450; structural genomics,	99.79
3cpx_A		321	Aminopeptidase, M42 family; YP_676701.1, putative	99.72
1tkj_A		284	Aminopeptidase, SGAP; double-zinc metalloproteinas	99.72
3tc8_A		309	Leucine aminopeptidase; phosphorylase/hydrolase-li	99.56
3kl9_A		355	PEPA, glutamyl aminopeptidase; tetrahedral aminope	99.51
3gux_A		314	Putative Zn-dependent exopeptidase; aminopeptidase	99.51
2afw_A		329	Glutaminyl-peptide cyclotransferase; alpha-beta pr	99.47
2vpu_A		354	TET3, 354AA long hypothetical operon protein FRV;	99.46
1rtq_A		299	Bacterial leucyl aminopeptidase; bimetallic, zinc,	99.46
3isx_A		343	Endoglucanase; TM1050, structural genomics, joint	99.31
3pb6_X		330	Glutaminyl-peptide cyclotransferase-like protein;	99.25
4fuu_A		309	Leucine aminopeptidase; phosphorylase/hydrolase li	99.22
4fai_A		330	CG5976, isoform B; alpha/beta hydrolase, PGlu form	99.17
4f9u_A		312	CG32412; alpha/beta hydrolase, PGlu formation, PE,	99.16
3iib_A		444	Peptidase M28; YP_926796.1, structural genomics, J	99.12
1q7l_B		88	Aminoacylase-1; catalysis, enzyme dimerization, si	99.09
2ek8_A		421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	98.78
3fed_A		707	Glutamate carboxypeptidase III; metallopeptidase,	98.36
3kas_A		640	Transferrin receptor protein 1; transferrin recept	98.31
3vat_A		496	Dnpep, aspartyl aminopeptidase; alpha-beta-alpha s	94.15
3k9t_A		435	Putative peptidase; structural genomics, joint cen	94.14
2glf_A		450	Probable M18-family aminopeptidase 1; putative, NY	93.48
1y7e_A		458	Probable M18-family aminopeptidase 1; aminopeptida	93.27
2ijz_A		428	Probable M18-family aminopeptidase 2; putative ami	92.56
4eme_A		571	M18 aspartyl aminopeptidase; dnpep/M18/aminopeptid	91.19
2glj_A		461	Probable M18-family aminopeptidase 1; aminopeptida	89.25
1rtq_A		299	Bacterial leucyl aminopeptidase; bimetallic, zinc,	80.11

>3io1_A Aminobenzoyl-glutamate utilization protein; peptidase_M20D superfamily, protein structure initiative II, NYSGXRC, structural genomics; 2.50A {Klebsiella pneumoniae subsp}	Back alignment and structure

Probab=100.00  E-value=8.7e-52  Score=388.89  Aligned_cols=308  Identities=29%  Similarity=0.434  Sum_probs=227.9

Q ss_pred             ChHHHHHHHHhCCCceeccC---------------------------------------CCceEEEEecCC-CCCEEEEE
Q 036756            1 AGQLVRNELASLGIEYTWPF---------------------------------------AKTGIVASVGSG-VQPWFGLR   40 (321)
Q Consensus         1 ~a~~l~~~L~~~G~~~~~~~---------------------------------------~~~nvia~~~~~-~~~~i~l~   40 (321)
                      +++||+++|+++||++++..                                       +++||+|+++++ ++|+|+|+
T Consensus        36 t~~~i~~~L~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~vva~~~~~~~g~~i~l~  115 (445)
T 3io1_A           36 TASKVADILDGLGYQLALGRDVIDADSRMGLPDEETLARAFERAREQGAPERWLPAFEGGFAGVVATLDTGRPGPTLAFR  115 (445)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGTSCSTTCCSCCCHHHHHHHHHHHHTTTCCTTTGGGGTTTCCCEEEEEECSSCCCEEEEE
T ss_pred             HHHHHHHHHHHCCCeEEecccccccccccccccchhhhhhhhhhccccccccccccccCCCCEEEEEEeCCCCCCEEEEE
Confidence            36899999999999876531                                       578999999775 57999999


Q ss_pred             eccccCCCCCCCCC---Ccc----ccCCCceecCCchHHHHHHHHHHHHHHhccCCCCceEEEEEecCCCccchhhhHHH
Q 036756           41 ADMDALPIQEMVEW---EHK----SKNNGKMHACGHDVHTTMLLGAARLLKQRKDRLKGTVKLVFQPGEESYGGAYHMIK  113 (321)
Q Consensus        41 ~H~DtVp~~~~~~~---pf~----~~~~G~~~g~g~kg~~aa~l~a~~~l~~~~~~~~~~i~~~~~~dEE~g~G~~~l~~  113 (321)
                      +||||||+++.+.|   ||.    +..+|++||||||+++|++|+|++.|++.+..++++|.|+|++|||++.|++.|++
T Consensus       116 ah~Davp~~e~~~~~~~Pf~~~~~s~~~G~~h~cGhd~~~a~~l~aa~~L~~~~~~~~g~v~l~f~p~EE~~~Ga~~~i~  195 (445)
T 3io1_A          116 VDMDALDLNEQHDDSHRPHRDHFASCNAGMMHACGHDGHTAIGLGLAHVLKQYAAQLNGVIKLIFQPAEEGTRGARAMVA  195 (445)
T ss_dssp             EECCCCCC-------------------------CTTCTHHHHHHHHHHHHHHTGGGCCSEEEEEEESCTTTTCHHHHHHH
T ss_pred             EecCCcCCCCCCCCCcCccccccccCCCCceEecCchHHHHHHHHHHHHHHhCcCcCCceEEEEEeccccccchHHHHHH
Confidence            99999999877677   443    46789999999999999999999999988778999999999999997789999999


Q ss_pred             cCCCCCcceEEEeccCCCCCceeEEeeccccccceeEEEEEEEecCCCC-CCCCCCCCHHHHHHHHHHHHHHhhcccCC-
Q 036756          114 EGALEKFQGIFGLHVAPELPTGTIGSRPGPMLAGSMRFLAVIEGKGGHA-AMPHATRDPVLAASFAILALQQIVSRETD-  191 (321)
Q Consensus       114 ~g~~~~~d~~i~~~~~~~~p~g~~~~~~g~~~~g~~~~~i~v~G~~aHs-s~p~~g~nAi~~~~~~i~~l~~~~~~~~~-  191 (321)
                      +|.++++|++|++|+++..|.|.+.+..+... +..+++|+++|+++|+ ++|+.|+|||..+++++.+|+++.. ..+ 
T Consensus       196 ~g~~~~~d~~~~~h~~~~~~~g~i~~~~~g~~-a~~~~~i~v~Gk~~HaGs~P~~g~nAi~~aa~~i~~l~~l~~-~~~~  273 (445)
T 3io1_A          196 AGVVDDVDYFTAIHIGTGVPAGTVVCGGDNFM-ATTKFDVQFSGVAAHAGGKPEDGRNALLAAAQAALGLHAIPP-HSAG  273 (445)
T ss_dssp             TTTTTTCSEEEEEEEEEEEETTBEESCCCCBC-EEEEEEEEEECCCSSTTCCGGGCCCHHHHHHHHHHHHHTCCC-BTTB
T ss_pred             cCCccccceeEEEeccCCCCCCeEEEecCCee-EEEEEEEEEEeecCCCCCCCcCCcCHHHHHHHHHHHHHHHHh-hcCC
Confidence            99888899999999876667787665433222 3579999999999998 6999999999999999999998732 211 


Q ss_pred             ------------------CchH-----------H-----------HHHHHHHHhCCeEEEEEeccccCCCCCccCCHHHH
Q 036756          192 ------------------PLEA-----------R-----------VIEMQAAVHQCSATLDFMEEKLRPYPATVNDEEMY  231 (321)
Q Consensus       192 ------------------p~~~-----------~-----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (321)
                                        |...           .           +++.+++.+++++++++    ...+|++.+|++++
T Consensus       274 ~~~~~vg~i~gG~~~NvIP~~a~~~~~iR~~~~~~~~~i~~~i~~~~~~~a~~~g~~~~i~~----~~~~~~~~~d~~l~  349 (445)
T 3io1_A          274 ASRVNVGVMQAGTGRNVVPSSALLKVETRGESEAINQYVFERAQHVVAGAAAMYEARYELRM----MGAATASAPSPAWV  349 (445)
T ss_dssp             CEEEEEEEEEECSCTTSCCCEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEE----EEEECCCCCCHHHH
T ss_pred             CeEEEEEEEecCCCCceeCCeEEEEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEE----ecCCCCcCCCHHHH
Confidence                              1100           0           34455566899999988    55678889999999


Q ss_pred             HHHHHHHHhhcCCcceecc-CCCcCCCcHHHHHHHhh-----heEEEecccCCCCCCCCCCCCCCCcCCCCcHHHHHHHH
Q 036756          232 EHAKKVGTSLLGEANVHLL-PMAMGAEDFSFYSQKMA-----AALFMIGTRNETLKPVVRLHSPYLVIDEDVLPIGAALH  305 (321)
Q Consensus       232 ~~~~~~~~~~~g~~~~~~~-~~~~~~~D~~~~~~~~p-----~~~~~~G~~~~~~g~~~~~H~~~E~v~~~~l~~~~~~~  305 (321)
                      +.+++++++++|...+... ..+.+++|+++|++.+|     ++++++|+..     ...+|+++|++++++|..++++|
T Consensus       350 ~~~~~a~~~~~g~~~v~~~~~~~~g~~D~~~~~~~~P~~gg~~~~~~~G~~~-----~~~~H~~~E~i~~~~l~~g~~~~  424 (445)
T 3io1_A          350 DYLREQAARVPGVQQAVDRIAAPAGSEDATLMMARVQARGGLASYMIFGTEL-----SAGHHNEKFDFDESVMAVAVETL  424 (445)
T ss_dssp             HHHHHHHHHSTTCCBCBSSCCCCCBCCTHHHHHHHHHHTTCEEEEEEEEEEC----------------CCCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCccceecCCCCccHHHHHHHHHHhcccCCceEEEEEeCCC-----CCCCCCCCCcCCHHHHHHHHHHH
Confidence            9999999998776543222 23478999999998887     5666778643     35799999999999999999999


Q ss_pred             HHHHHHHhcccccc
Q 036756          306 AAVAISYLDDHAVE  319 (321)
Q Consensus       306 ~~~~~~~~~~~~~~  319 (321)
                      +.++.+|+.++.++
T Consensus       425 ~~~~~~~~~~~~~~  438 (445)
T 3io1_A          425 ARVALNFPWQRGVE  438 (445)
T ss_dssp             HHHHHTCCSCC---
T ss_pred             HHHHHHHhhccCCC
Confidence            99999999886654

PyMOL of 3io1

>1xmb_A IAA-amino acid hydrolase homolog 2; structural genomics, protein structure initiative, CESG AT5G56660, ILL2, indole-3-acetic acid, auxin; 2.00A {Arabidopsis thaliana} SCOP: c.56.5.4 d.58.19.1 PDB: 2q43_A	Back alignment and structure

>1ysj_A Protein YXEP; M20 family peptidase, dinuclear metal binding, structural GE PSI, protein structure initiative; 2.40A {Bacillus subtilis} SCOP: c.56.5.4 d.58.19.1	Back alignment and structure

>3ram_A HMRA protein; two-domain, catalytic (alpha-beta-alpha) motif, tetramerisat (alpha,beta,BETA,alpha), endoprotease, hydrolase; 2.70A {Staphylococcus aureus}	Back alignment and structure

>1vgy_A Succinyl-diaminopimelate desuccinylase; structural genomics, unknown function; HET: MSE; 1.90A {Neisseria meningitidis} SCOP: c.56.5.4 d.58.19.1	Back alignment and structure

>3isz_A Succinyl-diaminopimelate desuccinylase; DAPE, Zn-binding, metallopeptidase, structural genomics, PSI-2, protein struc initiative; 2.00A {Haemophilus influenzae} PDB: 3ic1_A	Back alignment and structure

>3pfo_A Putative acetylornithine deacetylase; metal binding, merops M20A family, amino-acid biosynthesis, metallopeptidase; 1.90A {Rhodopseudomonas palustris}	Back alignment and structure

>1cg2_A Carboxypeptidase G2; metallocarboxypeptidase, hydrolase; 2.50A {Pseudomonas SP} SCOP: c.56.5.4 d.58.19.1	Back alignment and structure

>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus aureus subsp}	Back alignment and structure

>3ife_A Peptidase T; metallopeptidase, aminopeptidase, hydro metal-binding, metalloprotease, protease; HET: SUC; 1.55A {Bacillus anthracis}	Back alignment and structure

>3gb0_A Peptidase T; NP_980509.1, aminopeptidase PEPT, peptidase family M20/M25/M structural genomics, joint center for structural genomics; 2.04A {Bacillus cereus atcc 10987}	Back alignment and structure

>3dlj_A Beta-Ala-His dipeptidase; CNDP1, carnosine dipeptidase 1, structural genomics, structu genomics consortium, SGC, metallopeptidase M20 family; 2.26A {Homo sapiens}	Back alignment and structure

>2f7v_A Aectylcitrulline deacetylase; alpha/beta, hydrolase; 1.75A {Xanthomonas campestris} PDB: 2f8h_A	Back alignment and structure

>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp}	Back alignment and structure

>1fno_A Peptidase T; metallo peptidase, protease, hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.56.5.4 d.58.19.1 PDB: 1vix_A	Back alignment and structure

>3ct9_A Acetylornithine deacetylase; NP_812461.1, A putative zinc peptidase, peptidase family M20 structural genomics; 2.31A {Bacteroides thetaiotaomicron vpi-5482}	Back alignment and structure

>3khx_A Putative dipeptidase sacol1801; DAPE, metallopeptidase, hydrolase, metal-bindin metalloprotease, protease; 2.30A {Staphylococcus aureus} PDB: 3ki9_A 3khz_A	Back alignment and structure

>3tx8_A Succinyl-diaminopimelate desuccinylase; peptidase, structural genomics, joint center for structural JCSG; 2.97A {Corynebacterium glutamicum}	Back alignment and structure

>2zog_A Cytosolic non-specific dipeptidase; metallopeptidase, protein-inhibitor complex, CNDP2, CNDP DIP 2, bestatin, L-carnosine, carnosinase, Zn; HET: BES; 1.70A {Mus musculus} PDB: 2zof_A*	Back alignment and structure

>2pok_A Peptidase, M20/M25/M40 family; M20 family peptidase, metallo protein, MCSG, structural GENO PSI-2, protein structure initiative; HET: BGC; 1.90A {Streptococcus pneumoniae}	Back alignment and structure

>3n5f_A L-carbamoylase, N-carbamoyl-L-amino acid hydrolase; hinge domain, M20 peptidase family, evolution, residue, dimerization domain; 2.75A {Bacillus stearothermophilus}	Back alignment and structure

>1z2l_A Allantoate amidohydrolase; ALLC, purine cataboli allantoin utilization, structural genomics, PSI, Pro structure initiative; HET: 1AL; 2.25A {Escherichia coli} SCOP: c.56.5.4 d.58.19.1 PDB: 2imo_A	Back alignment and structure

>2rb7_A Peptidase, M20/M25/M40 family; YP_387682.1, CO-catalytic metallopeptidase, peptidase family M20/M25/M40, structural genomics; HET: MSE PGE PG4; 1.60A {Desulfovibrio desulfuricans subsp}	Back alignment and structure

>2v8h_A Beta-alanine synthase; amidohydrolase, alpha and beta protein, DI-zinc center, COMP N-carbamyl-beta-alanine, hydrolase; HET: BCN; 2.0A {Saccharomyces kluyveri} PDB: 2v8d_A* 2vl1_A 2v8g_A 2v8v_A 1r43_A 1r3n_A	Back alignment and structure

>2qyv_A XAA-His dipeptidase; YP_718209.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, hydrolase; 2.11A {Haemophilus somnus 129PT}	Back alignment and structure

>1lfw_A PEPV; hydrolase, dipeptidase; HET: AEP; 1.80A {Bacteria} SCOP: c.56.5.4 d.58.19.1	Back alignment and structure

>3mru_A Aminoacyl-histidine dipeptidase; metalloprotease, homodimer, hydrolase; 3.00A {Vibrio alginolyticus}	Back alignment and structure

>3t68_A Succinyl-diaminopimelate desuccinylase; DAPE, csgid, metalloenzyme, structural genomics; 1.65A {Vibrio cholerae o1 biovar el tor} PDB: 3t6m_A	Back alignment and structure

>4h2k_A Succinyl-diaminopimelate desuccinylase; DAPE, MCSG, PSI-biology, structural genomics, midwest center structural genomics, hydrolase; 1.84A {Haemophilus influenzae}	Back alignment and structure

>2fvg_A Endoglucanase; TM1049, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.01A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4	Back alignment and structure

>1q7l_A Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4	Back alignment and structure

>2wyr_A Cobalt-activated peptidase TET1; hydrolase, large SELF-assembled dodecamer, hyperthermophilic; 2.24A {Pyrococcus horikoshii} PDB: 2cf4_A	Back alignment and structure

>1vhe_A Aminopeptidase/glucanase homolog; structural genomics, unknown function; HET: MSE; 1.90A {Bacillus subtilis} SCOP: b.49.3.1 c.56.5.4	Back alignment and structure

>2gre_A Deblocking aminopeptidase; structural genomi protein structure initiative, midwest center for structural genomics, MCSG, hydrolase; 2.65A {Bacillus cereus} SCOP: b.49.3.1 c.56.5.4	Back alignment and structure

>1y0y_A FRV operon protein FRVX; aminopeptidase, PDZ, hydrolase; HET: ATI; 1.60A {Pyrococcus horikoshii} SCOP: b.49.3.1 c.56.5.4 PDB: 1y0r_A* 1xfo_A	Back alignment and structure

>2wzn_A TET3, 354AA long hypothetical operon protein FRV; protease, hydrolase, thermophilic, SELF-compartmentalising; 1.90A {Pyrococcus horikoshii} PDB: 2pe3_A	Back alignment and structure

>1vho_A Endoglucanase; structural genomics, unknown function; HET: MSE; 1.86A {Thermotoga maritima} SCOP: b.49.3.1 c.56.5.4	Back alignment and structure

>1ylo_A Hypothetical protein SF2450; structural genomics, MCSG, PSI, structure initiative; 2.15A {Shigella flexneri 2a str} SCOP: b.49.3.1 c.56.5.4	Back alignment and structure

>3cpx_A Aminopeptidase, M42 family; YP_676701.1, putative M42 glutamyl aminopeptidase, structura genomics; 2.39A {Cytophaga hutchinsonii atcc 33406}	Back alignment and structure

>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A	Back alignment and structure

>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis}	Back alignment and structure

>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}	Back alignment and structure

>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482}	Back alignment and structure

>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...	Back alignment and structure

>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ...	Back alignment and structure

>3isx_A Endoglucanase; TM1050, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.40A {Thermotoga maritima}	Back alignment and structure

>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X*	Back alignment and structure

>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}	Back alignment and structure

>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A*	Back alignment and structure

>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*	Back alignment and structure

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}	Back alignment and structure

>1q7l_B Aminoacylase-1; catalysis, enzyme dimerization, site- directed mutagenesis, structure comparison, zinc, hydrolase; 1.40A {Homo sapiens} SCOP: c.56.5.4	Back alignment and structure

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*	Back alignment and structure

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...	Back alignment and structure

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A	Back alignment and structure

>3vat_A Dnpep, aspartyl aminopeptidase; alpha-beta-alpha sandwich, binuclea center, M18 peptidase, MH CLAN, tetrahedral aminopeptidase, hydrolase; 2.10A {Bos taurus} PDB: 3var_A 3l6s_A* 4dyo_A*	Back alignment and structure

>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}	Back alignment and structure

>2glf_A Probable M18-family aminopeptidase 1; putative, NYSGXRC, structural genomics, PS protein structure initiative; 2.80A {Thermotoga maritima}	Back alignment and structure

>1y7e_A Probable M18-family aminopeptidase 1; aminopeptidase I, borrelia burgdorferi B31, YSCI, structural genomics, PSI; 3.20A {Borrelia burgdorferi} SCOP: b.49.3.1 c.56.5.4	Back alignment and structure

>2ijz_A Probable M18-family aminopeptidase 2; putative aminopeptidase 2, structura genomics, PSI, protein structure initiative; 3.00A {Pseudomonas aeruginosa}	Back alignment and structure

>4eme_A M18 aspartyl aminopeptidase; dnpep/M18/aminopeptidase, protease, hydrolase; 2.60A {Plasmodium falciparum 3D7}	Back alignment and structure

>2glj_A Probable M18-family aminopeptidase 1; aminopeptidase I, NYSGXRC, structural genomics, PSI, protein structure initiative; 3.20A {Clostridium acetobutylicum}	Back alignment and structure

>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ...	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		321
d1ysja1		261	c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillu	5e-33
d1ysja1		261	c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillu	6e-11
d1xmba1		273	c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydro	7e-33
d1xmba1		273	c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydro	1e-16
d1lfwa2		196	d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactoba	6e-12
d1xmba2		119	d.58.19.1 (A:216-334) IAA-amino acid hydrolase {Mo	1e-09
d2grea2		233	c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptid	6e-08
d1vgya2		113	d.58.19.1 (A:181-293) Succinyl-diaminopimelate des	9e-07
d1ysja2		115	d.58.19.1 (A:178-292) Protein YxeP {Bacillus subti	5e-06
d1cg2a2		113	d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudom	3e-04
d1z2la2		117	d.58.19.1 (A:213-329) Allantoate amidohydrolase Al	7e-04

>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]} Length = 261	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: Protein YxeP
species: Bacillus subtilis [TaxId: 1423]

 Score =  120 bits (302), Expect = 5e-33
 Identities = 73/204 (35%), Positives = 100/204 (49%), Gaps = 12/204 (5%)

Query: 3   QLVRNELASLGIEYT-WPFAKTGIVASV-GSGVQPWFGLRADMDALPIQEMVEWEHKSKN 60
           + +R  L    IE    P  KTG++A + G    P   +RAD+DALPIQE       SK 
Sbjct: 29  KKIRRWLEEEQIEILDVPQLKTGVIAEIKGREDGPVIAIRADIDALPIQEQTNLPFASKV 88

Query: 61  NGKMHACGHDVHTTMLLGAARLLKQRKDRLKGTVKLVFQPGEESYGGAYHMIKEGALEKF 120
           +G MHACGHD HT  ++G A LL QR+  LKGTV+ +FQP EE   GA  +++ G L   
Sbjct: 89  DGTMHACGHDFHTASIIGTAMLLNQRRAELKGTVRFIFQPAEEIAAGARKVLEAGVLNGV 148

Query: 121 QGIFGLHVAPELPTGTIGSRPGPMLA----------GSMRFLAVIEGKGGHAAMPHATRD 170
             IFG+H  P+LP GTIG + GP++A           +    A +  +  HA       D
Sbjct: 149 SAIFGMHNKPDLPVGTIGVKEGPLMASVQNDGTFLNAASEAAARLGYQTVHAEQSPGGED 208

Query: 171 PVLAASFAILALQQIVSRETDPLE 194
             L           + +  T+   
Sbjct: 209 FALYQEKIPGFFVWMGTNGTEEWH 232

PyMOL of d1ysja1

>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]} Length = 261	Back information, alignment and structure

>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 273	Back information, alignment and structure

>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 273	Back information, alignment and structure

>d1lfwa2 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]} Length = 196	Back information, alignment and structure

>d1xmba2 d.58.19.1 (A:216-334) IAA-amino acid hydrolase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119	Back information, alignment and structure

>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]} Length = 233	Back information, alignment and structure

>d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate desuccinylase {Neisseria meningitidis [TaxId: 487]} Length = 113	Back information, alignment and structure

>d1ysja2 d.58.19.1 (A:178-292) Protein YxeP {Bacillus subtilis [TaxId: 1423]} Length = 115	Back information, alignment and structure

>d1cg2a2 d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 [TaxId: 306]} Length = 113	Back information, alignment and structure

>d1z2la2 d.58.19.1 (A:213-329) Allantoate amidohydrolase AllC {Escherichia coli [TaxId: 562]} Length = 117	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		321
d1xmba1		273	IAA-amino acid hydrolase, catalytic domain {Mouse-	100.0
d1ysja1		261	Protein YxeP {Bacillus subtilis [TaxId: 1423]}	100.0
g1q7l.1		280	Aminoacylase-1, catalytic domain {Human (Homo sapi	99.93
d1vgya1		262	Succinyl-diaminopimelate desuccinylase, catalytic	99.88
d1cg2a1		276	Carboxypeptidase G2, catalytic domain {Pseudomonas	99.86
d1fnoa4		295	Peptidase T (tripeptidase), catalytic domain {Salm	99.85
d1r3na1		322	Peptidase-like beta-alanine synthase, catalytic do	99.83
d1z2la1		293	Allantoate amidohydrolase AllC catalytic domain {E	99.82
d1lfwa1		272	Aminopeptidase PepV {Lactobacillus delbrueckii [Ta	99.8
d2grea2		233	Deblocking aminopeptidase YhfE {Bacillus cereus [T	99.72
d1yloa2		264	Aminopeptidase YpdE {Shigella flexneri [TaxId: 623	99.72
d1vhea2		275	Hypothetical protein YsdC, catalytic domain {Bacil	99.71
d1vhoa2		248	Putative endoglucanase TM1048, catalytic domain {T	99.69
d2fvga2		255	Endoglucanase TM1049 {Thermotoga maritima [TaxId:	99.66
d1tkja1		277	Aminopeptidase {Streptomyces griseus [TaxId: 1911]	99.5
d1rtqa_		291	Aminopeptidase {Aeromonas proteolytica [TaxId: 671	99.26
d1xmba2		119	IAA-amino acid hydrolase {Mouse-ear cress (Arabido	99.22
d1ysja2		115	Protein YxeP {Bacillus subtilis [TaxId: 1423]}	99.22
d2afwa1		329	Glutaminyl-peptide cyclotransferase, QPCT {Human (	99.14
d1vgya2		113	Succinyl-diaminopimelate desuccinylase {Neisseria	98.98
d1de4c3		294	Transferrin receptor ectodomain, protease-like dom	98.94
d3bi1a3		304	Glutamate carboxypeptidase II FOLH1 {Human (Homo s	98.89
d1z2la2		117	Allantoate amidohydrolase AllC {Escherichia coli [	98.78
d1cg2a2		113	Carboxypeptidase G2 {Pseudomonas sp., strain rs-16	98.66
d1lfwa2		196	Aminopeptidase PepV {Lactobacillus delbrueckii [Ta	98.48
d1y0ya2		255	Frv operon protein FrvX, catalytic domain {Pyrococ	98.48
d1r3na2		116	Peptidase-like beta-alanine synthase {Yeast (Sacch	97.98
d1fnoa3		113	Peptidase T (tripeptidase) {Salmonella typhimurium	92.05
d1y7ea2		322	Probable aminopeptidase ApeA {Borrelia burgdorferi	90.78

>d1xmba1 c.56.5.4 (A:37-215,A:335-428) IAA-amino acid hydrolase, catalytic domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Bacterial dinuclear zinc exopeptidases
domain: IAA-amino acid hydrolase, catalytic domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.7e-39  Score=278.99  Aligned_cols=237  Identities=48%  Similarity=0.853  Sum_probs=194.0

Q ss_pred             ChHHHHHHHHhCCCceeccCCCceEEEEecCCCCCEEEEEeccccCCCCCCCCCCccccCCCceecCCchHHHHHHHHHH
Q 036756            1 AGQLVRNELASLGIEYTWPFAKTGIVASVGSGVQPWFGLRADMDALPIQEMVEWEHKSKNNGKMHACGHDVHTTMLLGAA   80 (321)
Q Consensus         1 ~a~~l~~~L~~~G~~~~~~~~~~nvia~~~~~~~~~i~l~~H~DtVp~~~~~~~pf~~~~~G~~~g~g~kg~~aa~l~a~   80 (321)
                      +++||+++|+++||++++..+.++|+|.++++++|+|+|++|||++|..+.+.+||.+..+|++|+||||+++|++|+++
T Consensus        35 T~~~i~~~L~~~g~~~~~~~~~tg~~a~~~~~~~~~i~~rad~Dalp~~e~~~~~~~s~~~g~~HaCGHd~h~a~~l~aa  114 (273)
T d1xmba1          35 TSKLIRSELELIGIKYRYPVAITGVIGYIGTGEPPFVALRADMDALPIQEGVEWEHKSKIAGKMHACGHDGHVTMLLGAA  114 (273)
T ss_dssp             HHHHHHHHHHHHTCCEEEEETTTEEEEEEESSSSCEEEEEEECCCBSCCCCCCSTTCCSSTTCBCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCeEEecCCceEEEEEECCCcceEEEEeccccccccccccCcccccCCCCcccccccchHHHHHHHHH
Confidence            36899999999999988766678999999877779999999999999999899999999999999999999999999999


Q ss_pred             HHHHhccCCCCceEEEEEecCCCccchhhhHHHcCCCCCcceEEEeccCCCCCceeEEeeccccccceeEEEEEEEecCC
Q 036756           81 RLLKQRKDRLKGTVKLVFQPGEESYGGAYHMIKEGALEKFQGIFGLHVAPELPTGTIGSRPGPMLAGSMRFLAVIEGKGG  160 (321)
Q Consensus        81 ~~l~~~~~~~~~~i~~~~~~dEE~g~G~~~l~~~g~~~~~d~~i~~~~~~~~p~g~~~~~~g~~~~g~~~~~i~v~G~~a  160 (321)
                      +.|++.+..++|+|+|+|+|+||+++|++.|+++|.++++|++|.+|+.|..|.|++.++.|....              
T Consensus       115 ~~l~~~~~~~~g~v~~ifqPaEE~~~Ga~~mi~~G~~~~vd~~~~~H~~~~~~~G~i~~~~G~~ma--------------  180 (273)
T d1xmba1         115 KILHEHRHHLQGTVVLIFQPAEEGLSGAKKMREEGALKNVEAIFGIHLSARIPFGKAASRAGSFLT--------------  180 (273)
T ss_dssp             HHHHHTGGGCSSEEEEEEECCTTTTCHHHHHHHTTTTTTEEEEEEEEEEEEEETTCEEECSEEEEE--------------
T ss_pred             HHHHHhhhcCCCeEEEEEecccccccchhHHHHcCCcCCCCeeEEEeecCCCCcchhhcccchhhh--------------
Confidence            999998888999999999999999999999999999999999999999887888887665443210              


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhhcccCCCchHHHHHHHHHHhCCeEEEEEeccccCCCCCccCCHHHHHHHHHHHHh
Q 036756          161 HAAMPHATRDPVLAASFAILALQQIVSRETDPLEARVIEMQAAVHQCSATLDFMEEKLRPYPATVNDEEMYEHAKKVGTS  240 (321)
Q Consensus       161 Hss~p~~g~nAi~~~~~~i~~l~~~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  240 (321)
                                                                                      .+|+.+.+.+.+++.+
T Consensus       181 ----------------------------------------------------------------~nd~~~~~~~~~~a~~  196 (273)
T d1xmba1         181 ----------------------------------------------------------------VNNKDLYKQFKKVVRD  196 (273)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------------------------------------------------------hhhhHhHHHHHHHHHH
Confidence                                                                            1112233334445555


Q ss_pred             hcCCcceeccCCCcCCCcHHHHHHHhhheEEEecccCCCCCCCCCCCCCCCcCCCCcHHHHHHHHHHHHHHHhccc
Q 036756          241 LLGEANVHLLPMAMGAEDFSFYSQKMAAALFMIGTRNETLKPVVRLHSPYLVIDEDVLPIGAALHAAVAISYLDDH  316 (321)
Q Consensus       241 ~~g~~~~~~~~~~~~~~D~~~~~~~~p~~~~~~G~~~~~~g~~~~~H~~~E~v~~~~l~~~~~~~~~~~~~~~~~~  316 (321)
                      .+|.+.+....+..+++||++|.+.+|++++++|..+...| ....|+|.+.++++.|..++++++.++.+||.++
T Consensus       197 ~~G~~av~~~~P~mgsEDFs~~~~~vPg~~~~lG~~~~~~g-~~~~Hsp~F~idE~aL~~Gv~~~~~~Al~~L~e~  271 (273)
T d1xmba1         197 LLGQEAFVEAAPVMGSEDFSYFAETIPGHFSLLGMQDETNG-YASSHSPLYRINEDVLPYGAAIHASMAVQYLKEK  271 (273)
T ss_dssp             --ECGGEEECCCBCCCCTHHHHHTTSCEEEEEEEEECTTCC-SCCTTCTTCCCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccccccccCchhhHHHHHHHHHhCCceEEEEccccCCCC-CcCCCCCCccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            55666554456789999999999999999999998765433 3579999999999999999999999999999765

PyMOL of d1xmba1

>d1ysja1 c.56.5.4 (A:4-177,A:293-379) Protein YxeP {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1vgya1 c.56.5.4 (A:2-180,A:294-376) Succinyl-diaminopimelate desuccinylase, catalytic domain {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

>d1cg2a1 c.56.5.4 (A:26-213,A:327-414) Carboxypeptidase G2, catalytic domain {Pseudomonas sp., strain rs-16 [TaxId: 306]}	Back information, alignment and structure

>d1fnoa4 c.56.5.4 (A:1-207,A:321-408) Peptidase T (tripeptidase), catalytic domain {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1r3na1 c.56.5.4 (A:18-247,A:364-455) Peptidase-like beta-alanine synthase, catalytic domain {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}	Back information, alignment and structure

>d1z2la1 c.56.5.4 (A:4-212,A:330-413) Allantoate amidohydrolase AllC catalytic domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1lfwa1 c.56.5.4 (A:1-186,A:383-468) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]}	Back information, alignment and structure

>d2grea2 c.56.5.4 (A:3-73,A:187-348) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]}	Back information, alignment and structure

>d1yloa2 c.56.5.4 (A:1-66,A:148-345) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]}	Back information, alignment and structure

>d1vhea2 c.56.5.4 (A:3-72,A:163-367) Hypothetical protein YsdC, catalytic domain {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1vhoa2 c.56.5.4 (A:3-69,A:153-333) Putative endoglucanase TM1048, catalytic domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d2fvga2 c.56.5.4 (A:1-64,A:149-339) Endoglucanase TM1049 {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1tkja1 c.56.5.4 (A:1-277) Aminopeptidase {Streptomyces griseus [TaxId: 1911]}	Back information, alignment and structure

>d1rtqa_ c.56.5.4 (A:) Aminopeptidase {Aeromonas proteolytica [TaxId: 671]}	Back information, alignment and structure

>d1xmba2 d.58.19.1 (A:216-334) IAA-amino acid hydrolase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1ysja2 d.58.19.1 (A:178-292) Protein YxeP {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d2afwa1 c.56.5.8 (A:33-361) Glutaminyl-peptide cyclotransferase, QPCT {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vgya2 d.58.19.1 (A:181-293) Succinyl-diaminopimelate desuccinylase {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

>d1de4c3 c.56.5.5 (C:122-189,C:383-608) Transferrin receptor ectodomain, protease-like domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II FOLH1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1z2la2 d.58.19.1 (A:213-329) Allantoate amidohydrolase AllC {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1cg2a2 d.58.19.1 (A:214-326) Carboxypeptidase G2 {Pseudomonas sp., strain rs-16 [TaxId: 306]}	Back information, alignment and structure

>d1lfwa2 d.58.19.1 (A:187-382) Aminopeptidase PepV {Lactobacillus delbrueckii [TaxId: 1584]}	Back information, alignment and structure

>d1y0ya2 c.56.5.4 (A:164-351,A:6-72) Frv operon protein FrvX, catalytic domain {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1r3na2 d.58.19.1 (A:248-363) Peptidase-like beta-alanine synthase {Yeast (Saccharomyces kluyveri) [TaxId: 4934]}	Back information, alignment and structure

>d1fnoa3 d.58.19.1 (A:208-320) Peptidase T (tripeptidase) {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d1y7ea2 c.56.5.4 (A:4-100,A:234-458) Probable aminopeptidase ApeA {Borrelia burgdorferi [TaxId: 139]}	Back information, alignment and structure