Citrus Sinensis ID: 036772

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580---
Protein Sequence
GSEAIEGISLDMFRMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKLNRNEIGEIVDGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEWFSYQSMGSSVTLELPPGWVNNNFVGFALCAIVPDHHGDTRGFTVRCILKTKDDIAVCFLYVWEDYFGVNSSIESDHVLLGYDFSVSSDSFGGSNSEFCIQFYIQHFEGPGIEGFDVKKCGAHLIYVQDPSKRSAFTFFNLFGDNISNSECEVPAAI
Secondary Structure (PSIPRED)
ccccEEEEEEEcccccccEEEccccccccccccEEEccccccccccccEEEEEcccccccccccccccccEEEEccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEcccccccccccEEEEcccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccEEEccccccEEccccccccccccEEEcccccccccccccccccEEEEccccccEEEcccccHHccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEccccccccccccccccEEEEEcccccccccccEEEEEEEEEcccccccccEEEEEEEEcccccEEEEEEEcccccccccccccEEEEEEEcccccccccccccEEEEEEEEEEEcccccccEEEEEEEEEEEEEcccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEHHHccccEEEEEEcccccccccEEEcccccccccHHcEEEEccccccccccccccHHHHEEEcccccHHHHHHccccccccccEEEccccHHHccccccccccccHEEEccccccHcccccHHHHHHHcEEEEcccccccccccccccHHHHcEEEcccccHHHcccHHHHHHHHEEcccccHHccccHHHHHcccEEEEcccccccccccccHHccHcccEEEcccccHHccccccccccHHccEEEcccccccccccEccccccccEEccccccccccHcEEEccccccccccHHHHHHHHccEEccccccccccccccccccEEEcccccccEEcccccccccccccccEEEEEcccHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccccccEEEEccccccHHHcccccccEEEEEcccccccccccEEEEEEEEEcccccccccEEEEEEEEEccccccEEEEccccccccccccccEEEEEEccccccccccccccEEEEEEEEEcccccccccEEEEEcEEEEEEEccccccccccccccccccccHccccccccc
Coil and Loop (DISEMBL)
gseaiegiSLDMFRMRRLRFFKFynsfpemnkckvrhSRCLESFFNELRyfqwdgyplkslpsknipehlvslemphsnIEQLWNGVQNLAALKRLNLSYCkqlsripdlslalNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLgrcislkslptginldslkVLYLGGCSNLKRFLEISCNienldlseTAIEELpssignlsrlvrldltncsrlkSVSNSLCNLKSLQYLFLSGclkleklpeeiGNLESLKIMLANETAISQNlvdmslvdcgitelpeslgrspslkflnlaendfekipSSIKQLSNLLFLTLQNckrlqslpelpcgsnifaRYCTSLETLSNLSTLFTRSSELWQafdfcncfklnrneIGEIVDGALKKIQVMATWwkqqdpvtlyedyhnpprgcvsypgseipewfsyqsmgssvtlelppgwvnnnfvGFALCaivpdhhgdtrgfTVRCILKTKDDIAVCFLYVWEDYfgvnssiesDHVLLGYdfsvssdsfggsnsEFCIQFYIQHfegpgiegfdvkkCGAHLiyvqdpskrsaFTFFNLfgdnisnsecevpaai
Flexible Loop (DISEMBL)
gseaiegisldmfrMRRLRFFKFYnsfpemnkCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELpeslgrspslKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKLNRNEIGEIVDGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEWFSYQSMGSSVTLELPPGWVNNNFVGFALCAIVPDHHGDTRGFTVRCILKTKDDIAVCFLYVWEDYFGVNSSIESDHVLLGYDFSVSSDSFGGSNSEFCIQFYIQHFEGPGIEGFDVKKCGAHLIYVQDPSKRSAFTFFNLFGDNISNSECEVPAAI
Low Complexity Region (SEG)
GSEAIEGISLDmfrmrrlrffkfYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCtsletlsnlstlftRSSELWQAFDFCNCFKLNRNEIGEIVDGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEWFSYQSMGSSVTLELPPGWVNNNFVGFALCAIVPDHHGDTRGFTVRCILKTKDDIAVCFLYVWEDYFGVNSSIESDHVLLGYdfsvssdsfggsnsEFCIQFYIQHFEGPGIEGFDVKKCGAHLIYVQDPSKRSAFTFFNLFGDNISNSECEVPAAI
Disordered region (IsUnstruct)
******GISLDMFRMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKLNRNEIGEIVDGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEWFSYQSMGSSVTLELPPGWVNNNFVGFALCAIVPDHHGDTRGFTVRCILKTKDDIAVCFLYVWEDYFGVNSSIESDHVLLGYDFSVSSDSFGGSNSEFCIQFYIQHFEGPGIEGFDVKKCGAHLIYVQDPSKRSAFTFFNLFGDNI***********
Disordered Region (DISOPRED)
GSEAIEGISLDMFRMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLS*********SELWQAFDFCNCFKLNRNEIGEIVDGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEWFSYQSMGSSVTLELPPGWVNNNFVGFALCAIVPDHHGDTRGFTVRCILKTKDDIAVCFLYVWEDYFGVNSSIESDHVLLGYDFSVSSDSFGGSNSEFCIQFYIQHFEGPGIEGFDVKKCGAHLIYVQD*********************CE*****
Disordered Region (DISEMBL)
GSEAIEGISLDMFRMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKLNRNEIGEIVDGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEWFSYQSMGSSVTLELPPGWVNNNFVGFALCAIVPDHHGDTRGFTVRCILKTKDDIAVCFLYVWEDYFGVNSSIESDHVLLGYDFSVSSDSFGGSNSEFCIQFYIQHFEGPGIEGFDVKKCGAHLIYVQDPSKRSAFTFFNLFGDNISNSECEVPAAI
Disordered Region (DISPRO)
*SEAIEGISLDMFRMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKLNRNEIGEIVDGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEWFSYQSMGSSVTLELPPGWVNNNFVGFALCAIVPDHHGDTRGFTVRCILKTKDDIAVCFLYVWEDYFGVNSSIESDHVLLGYDFSVSSDSFGGSNSEFCIQFYIQHFEGPGIEGFDVKKCGAHLIYVQD****************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GSEAIEGISLDMFRMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKLNRNEIGEIVDGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEWFSYQSMGSSVTLELPPGWVNNNFVGFALCAIVPDHHGDTRGFTVRCILKTKDDIAVCFLYVWEDYFGVNSSIESDHVLLGYDFSVSSDSFGGSNSEFCIQFYIQHFEGPGIEGFDVKKCGAHLIYVQDPSKRSAFTFFNLFGDNISNSECEVPAAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	583	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.713	0.363	0.321	1e-49
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.492	0.151	0.385	2e-45
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.457	0.205	0.390	1e-37
O82500	1095	Putative disease resistan	no	no	0.437	0.232	0.367	8e-36
Q9FL92	1372	Probable WRKY transcripti	no	no	0.809	0.344	0.266	6e-33
Q9FH83	1288	Probable WRKY transcripti	no	no	0.850	0.385	0.264	2e-32
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.723	0.261	0.264	2e-26
Q9RBS2	1024	Protein PopC OS=Ralstonia	yes	no	0.447	0.254	0.302	8e-17
P0CB16	1201	Putative disease resistan	no	no	0.435	0.211	0.279	8e-17
Q7KRY7	1851	Protein lap4 OS=Drosophil	no	no	0.535	0.168	0.281	3e-16

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  198 bits (503), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 157/488 (32%), Positives = 244/488 (50%), Gaps = 72/488 (14%)

Query: 15   MRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLE 74
            M+RLR F        M +    ++  ++   N LR F    YP +S PS    + LV L+
Sbjct: 552  MKRLRVFN-------MGRSSTHYA--IDYLPNNLRCFVCTNYPWESFPSTFELKMLVHLQ 602

Query: 75   MPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSI 134
            + H+++  LW   ++L +L+R++LS+ K+L+R PD +   NLE+++L  C++L E+H S+
Sbjct: 603  LRHNSLRHLWTETKHLPSLRRIDLSWSKRLTRTPDFTGMPNLEYVNLYQCSNLEEVHHSL 662

Query: 135  QHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIE---NLDLSE 191
               +K++ L L  C SLK  P  +N++SL+ L L  C +L++  EI   ++    + +  
Sbjct: 663  GCCSKVIGLYLNDCKSLKRFPC-VNVESLEYLGLRSCDSLEKLPEIYGRMKPEIQIHMQG 721

Query: 192  TAIEELPSSIGNL-SRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIG 250
            + I ELPSSI    + + +L L N   L ++ +S+C LKSL  L +SGC KLE LPEEIG
Sbjct: 722  SGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIG 781

Query: 251  NLESLKIMLANETAISQ----------------------------------------NLV 270
            +L++L++  A++T I +                                        NL 
Sbjct: 782  DLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKDGVHFEFPPVAEGLHSLEYLNLS 841

Query: 271  DMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLP 330
              +L+D G   LPE +G   SLK L+L+ N+FE +PSSI QL  L  L L++C+RL  LP
Sbjct: 842  YCNLIDGG---LPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLP 898

Query: 331  ELPCGSNIFARYCTSLETLSNLSTLFTRSSELWQA-FDFCNCFKLNRNEIGEIVDGALKK 389
            ELP   N     C     L  +  L T+  +L +   D  +    N            + 
Sbjct: 899  ELPPELNELHVDCHM--ALKFIHYLVTKRKKLHRVKLDDAH----NDTMYNLFAYTMFQN 952

Query: 390  IQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEWFSYQSMGSSVTLELPPGW-VNN 448
            I  M       D ++L      P      YP  +IP WF +Q   SSV++ LP  W + +
Sbjct: 953  ISSMRHDISASDSLSLTVFTGQP------YP-EKIPSWFHHQGWDSSVSVNLPENWYIPD 1005

Query: 449  NFVGFALC 456
             F+GFA+C
Sbjct: 1006 KFLGFAVC 1013

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  184 bits (467), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 133/345 (38%), Positives = 183/345 (53%), Gaps = 58/345 (16%)

Query: 1    GSEAIEGISLDMF------------RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNEL 48
            G+ AIEGI LDM             +M  LR  K Y S  E  K  V   + LE   ++L
Sbjct: 1149 GTSAIEGIFLDMLNLKFDANPNVFEKMCNLRLLKLYCSKAE-EKHGVSFPQGLEYLPSKL 1207

Query: 49   RYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQ--------NLAALKRLNLSY 100
            R   W+ YPL SLP    PE+LV L +P S  ++LW G +        +L  LK++ LSY
Sbjct: 1208 RLLHWEYYPLSSLPKSFNPENLVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRLSY 1267

Query: 101  CKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINL 160
              QL++IP LS A NLE +DL GC SL+ +  SI +L KLVFLNL  C  L+++P+ ++L
Sbjct: 1268 SDQLTKIPRLSSATNLEHIDLEGCNSLLSLSQSISYLKKLVFLNLKGCSKLENIPSMVDL 1327

Query: 161  DSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKS 220
            +SL+VL L GCS L  F EIS N++ L +  T I+E+PSSI NL  L +LDL N   LK+
Sbjct: 1328 ESLEVLNLSGCSKLGNFPEISPNVKELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKN 1387

Query: 221  VSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGIT 280
            +  S+  LK L+ L LSGC+ LE+ P                                  
Sbjct: 1388 LPTSIYKLKHLETLNLSGCISLERFP---------------------------------- 1413

Query: 281  ELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKR 325
               +S  R   L+FL+L+  D +++PSSI  L+ L  L   + +R
Sbjct: 1414 ---DSSRRMKCLRFLDLSRTDIKELPSSISYLTALDELLFVDSRR 1455

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  158 bits (400), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/282 (39%), Positives = 160/282 (56%), Gaps = 15/282 (5%)

Query: 59   KSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEW 118
            + +P +  PE L  L +     E+LW G+Q+L +L+ ++LS  + L+ IPDLS A  LE 
Sbjct: 741  RCMPCEFRPEQLAFLNVRGYKHEKLWEGIQSLGSLEGMDLSESENLTEIPDLSKATKLES 800

Query: 119  LDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFL 178
            L L  C SL+ + S+I +L++LV L +  C  L+ LPT +NL SL+ L L GCS+L+ F 
Sbjct: 801  LILNNCKSLVTLPSTIGNLHRLVRLEMKECTGLEVLPTDVNLSSLETLDLSGCSSLRSFP 860

Query: 179  EISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSG 238
             IS NI  L L  TAIEE+PS+IGNL RLVRL++  C+ L+ +   + NL SL+ L LSG
Sbjct: 861  LISTNIVWLYLENTAIEEIPSTIGNLHRLVRLEMKKCTGLEVLPTDV-NLSSLETLDLSG 919

Query: 239  CLKLEKLPEEIGNLESLKIMLANETAISQ--------NLVDMSLVDC-GITELPESLGRS 289
            C  L   P      ES+K +    TAI +        NL ++ L +C  +  LP ++G  
Sbjct: 920  CSSLRSFP---LISESIKWLYLENTAIEEIPDLSKATNLKNLKLNNCKSLVTLPTTIGNL 976

Query: 290  PSLKFLNLAE-NDFEKIPSSIKQLSNLLFLTLQNCKRLQSLP 330
              L    + E    E +P  +  LS+L+ L L  C  L++ P
Sbjct: 977  QKLVSFEMKECTGLEVLPIDV-NLSSLMILDLSGCSSLRTFP 1017

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  152 bits (383), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 107/291 (36%), Positives = 153/291 (52%), Gaps = 36/291 (12%)

Query: 1   GSEAIEGISLDM--------------FRMRRLRFFKFYNSFPEMNKCKVRHSRCLE--SF 44
           G+  + GISLDM                MR L + KFY S P  +K KV+     E  S+
Sbjct: 525 GTGTVLGISLDMCEIKEELYISEKTFEEMRNLVYLKFYMSSPIDDKMKVKLQLPEEGLSY 584

Query: 45  FNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQL 104
             +LR   WD YPL+  PS   PE LV L M HS +++LW+GVQ L  L+ +NL+  + L
Sbjct: 585 LPQLRLLHWDAYPLEFFPSSFRPECLVELNMSHSKLKKLWSGVQPLRNLRTMNLNSSRNL 644

Query: 105 SRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLK 164
             +P+L  A  L  LDL  C SL+E+ SSI++L  L+ L +  C  L+ +PT INL SL+
Sbjct: 645 EILPNLMEATKLNRLDLGWCESLVELPSSIKNLQHLILLEMSCCKKLEIIPTNINLPSLE 704

Query: 165 VLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSI-------------GNLSRLV--- 208
           VL+   C+ L+ F EIS NI  L+L  TAI E+P S+               + RLV   
Sbjct: 705 VLHFRYCTRLQTFPEISTNIRLLNLIGTAITEVPPSVKYWSKIDEICMERAKVKRLVHVP 764

Query: 209 ----RLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESL 255
               +L L     L+++   L  L  LQ + +S C+ +  LP+  G++ +L
Sbjct: 765 YVLEKLCLRENKELETIPRYLKYLPRLQMIDISYCINIISLPKLPGSVSAL 815

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score =  142 bits (359), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 161/605 (26%), Positives = 240/605 (39%), Gaps = 133/605 (21%)

Query: 3    EAIEGISLDMFR------------MRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRY 50
            E IEG+ LD               M  LR FK Y+S PE++         L S  N LR 
Sbjct: 492  EEIEGMFLDTSNLSFDIKHVAFDNMLNLRLFKIYSSNPEVHHVNNFLKGSLSSLPNVLRL 551

Query: 51   FQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDL 110
              W+ YPL+ LP    P HLV + MP+S +++LW G ++L  LK + L + +QL  I DL
Sbjct: 552  LHWENYPLQFLPQNFDPIHLVEINMPYSQLKKLWGGTKDLEMLKTIRLCHSQQLVDIDDL 611

Query: 111  SLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGG 170
              A NLE +DL GC                          L+S P    L  L+V+ L G
Sbjct: 612  LKAQNLEVVDLQGCT------------------------RLQSFPATGQLLHLRVVNLSG 647

Query: 171  CSNLKRFLEISCNIENLDLSETAIEELPSSI------------------GNLSRLVRLDL 212
            C+ +K F EI  NIE L+L  T I ELP SI                    +S L + DL
Sbjct: 648  CTEIKSFPEIPPNIETLNLQGTGIIELPLSIVKPNYRELLNLLAEIPGLSGVSNLEQSDL 707

Query: 213  TNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDM 272
               + L  +S S  N   L  L L+ C +L  LP  + NLE LK +            D+
Sbjct: 708  KPLTSLMKISTSYQNPGKLSCLELNDCSRLRSLPNMV-NLELLKAL------------DL 754

Query: 273  SLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPEL 332
            S    G +EL    G   +LK L L       + ++++Q                 +P+L
Sbjct: 755  S----GCSELETIQGFPRNLKELYL-------VGTAVRQ-----------------VPQL 786

Query: 333  PCGSNIF-ARYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKLNRNEIGEIVDGALKKI- 390
            P     F A  C SL+++           +L   + F NCF L+   + + +  A+  + 
Sbjct: 787  PQSLEFFNAHGCVSLKSIR------LDFKKLPVHYTFSNCFDLSPQVVNDFLVQAMANVI 840

Query: 391  ------QVMATWWKQQDPVTLYEDYHNPPRGCVSY-----PGSEIPEWFSYQSMGSSVTL 439
                  +   T + Q+       D        +++       +        Q   SS+T 
Sbjct: 841  AKHIPRERHVTGFSQKTVQRSSRDSQQELNKTLAFSFCAPSHANQNSKLDLQPGSSSMT- 899

Query: 440  ELPPGWVNNNFVGFALCAIVPDHHG--DTRGFTVRCILKTKDDIAVCF-----LYVWEDY 492
             L P W  N  VGFA+   V    G  D   F + C+ K K+           L+ W   
Sbjct: 900  RLDPSW-RNTLVGFAMLVQVAFSEGYCDDTDFGISCVCKWKNKEGHSHRREINLHCW--- 955

Query: 493  FGVNSSIESDHVLLGYDFSVSSDSFGGSNSEFCIQFYIQHF------EGPGIEGFDVKKC 546
              +  ++E DH  + +D ++  D+  G++ +      +  F        P  +   V +C
Sbjct: 956  -ALGKAVERDHTFVFFDVNMRPDTDEGNDPDIWADLVVFEFFPVNKQRKPLNDSCTVTRC 1014

Query: 547  GAHLI 551
            G  LI
Sbjct: 1015 GVRLI 1019

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score =  140 bits (354), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 164/621 (26%), Positives = 252/621 (40%), Gaps = 125/621 (20%)

Query: 1    GSEAIEGISLDMFRMR------------RLRFFKFYNSFPEMNKCKVRHSRCLESFFNEL 48
            GSE IEG+ LD   +R             LR  K Y S PE++      +  L S  NEL
Sbjct: 497  GSEEIEGLFLDTSNLRFDLQPSAFKNMLNLRLLKIYCSNPEVHPVINFPTGSLHSLPNEL 556

Query: 49   RYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP 108
            R   W+ YPLKSLP    P HLV + MP+S +++LW G +NL  L+ + L +   L  I 
Sbjct: 557  RLLHWENYPLKSLPQNFDPRHLVEINMPYSQLQKLWGGTKNLEMLRTIRLCHSHHLVDID 616

Query: 109  DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYL 168
            DL  A NLE +DL GC                          L++ P    L  L+V+ L
Sbjct: 617  DLLKAENLEVIDLQGCT------------------------RLQNFPAAGRLLRLRVVNL 652

Query: 169  GGCSNLKRFLEISCNIENLDLSETAIEELP------------------------------ 198
             GC  +K  LEI  NIE L L  T I  LP                              
Sbjct: 653  SGCIKIKSVLEIPPNIEKLHLQGTGILALPVSTVKPNHRELVNFLTEIPGLSEELERLTS 712

Query: 199  -----SSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLE 253
                 SS  +L +L+ L+L +CS L+S+ N + NL  L  L LSGC  L  +    G   
Sbjct: 713  LLESNSSCQDLGKLICLELKDCSCLQSLPN-MANL-DLNVLDLSGCSSLNSIQ---GFPR 767

Query: 254  SLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLS 313
             LK +    TAI +           + +LP+      SL+ LN   +    +P ++  L 
Sbjct: 768  FLKQLYLGGTAIRE-----------VPQLPQ------SLEILNAHGSCLRSLP-NMANLE 809

Query: 314  NLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLE-------TLSNLSTLFTRSSELWQAF 366
             L  L L  C  L+++   P          T+L        +L  L+   + S +L   +
Sbjct: 810  FLKVLDLSGCSELETIQGFPRNLKELYFAGTTLREVPQLPLSLEVLNAHGSDSEKLPMHY 869

Query: 367  DFCNCFKLNRNEIGEIVDGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPG-SEIP 425
             F N F L++  + + +   L  ++ +   + Q       E  +  P    S P  +   
Sbjct: 870  KFNNFFDLSQQVVNDFLLKTLTYVKHIPRGYTQ-------ELINKAPTFSFSAPSHTNQN 922

Query: 426  EWFSYQSMGSSVTLELPPGWVNNNFVGFALCAIV--PDHHGDTRGFTVRCILK-TKDDIA 482
              F  QS GSSV   L   W  N  VGF +   V  P+ + D     + C+ + +  +  
Sbjct: 923  ATFDLQS-GSSVMTRLNHSW-RNTLVGFGMLVEVAFPEDYCDATDVGISCVCRWSNKEGR 980

Query: 483  VCFL----YVWEDYFGVNSSIESDHVLLGYDFSVSSDSFGGSNSEF-----CIQFYIQHF 533
             C +    + W  +  V   +  DH  +  D ++   +  G++ +        +F+  + 
Sbjct: 981  SCRIERKFHCWAPW-QVVPKVRKDHTFVFSDVNMRPSTGEGNDPDIWAGLVVFEFFPINQ 1039

Query: 534  EGPGI-EGFDVKKCGAHLIYV 553
            +   + + F V++CG  +I V
Sbjct: 1040 QTKCLNDRFTVRRCGVRVINV 1060

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score =  121 bits (303), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 143/540 (26%), Positives = 222/540 (41%), Gaps = 118/540 (21%)

Query: 8   ISLDMFR-MRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNI 66
           +  D F+ M  L+F K YNS  +     +   + L+S   ELR   W+ YPL+SLP    
Sbjct: 533 VKHDAFKNMFNLKFLKIYNSCSKY-ISGLNFPKGLDSLPYELRLLHWENYPLQSLPQDFD 591

Query: 67  PEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCAS 126
             HLV L MP+S + +L   V++L  LKRL LS+  QL     L  A N+E +DL GC  
Sbjct: 592 FGHLVKLSMPYSQLHKLGTRVKDLVMLKRLILSHSLQLVECDILIYAQNIELIDLQGCT- 650

Query: 127 LIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIEN 186
                                   L+  P    L +L+V+ L GC+ +K F  +  NIE 
Sbjct: 651 -----------------------GLQRFPDTSQLQNLRVVNLSGCTEIKCFSGVPPNIEE 687

Query: 187 LDLSETAIEELP------------------SSIGNLSRLVRLDLTNCSRLKSVSNSLCNL 228
           L L  T I E+P                  + + N S +  +DL   + L +V+++   +
Sbjct: 688 LHLQGTRIREIPIFNATHPPKVKLDRKKLWNLLENFSDVEHIDLECVTNLATVTSNNHVM 747

Query: 229 KSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGR 288
             L  L +  C  L  LP+ + +LESLK++  +                G +EL + +G 
Sbjct: 748 GKLVCLNMKYCSNLRGLPDMV-SLESLKVLYLS----------------GCSELEKIMGF 790

Query: 289 SPSLKFLNLAENDFEKIPSSIKQLSNLL-FLTLQNCKRLQSLPELPCGSNIFARYCTSLE 347
             +LK L +      ++P    QL N L FL    CK L+S+                  
Sbjct: 791 PRNLKKLYVGGTAIRELP----QLPNSLEFLNAHGCKHLKSI------------------ 828

Query: 348 TLSNLSTLFTRSSELWQAFDFCNCFKLNRNEIGEIVDGALKKIQVMATWWKQQDPVTLYE 407
              NL        +L + F F NC++ +   I E V+  L      A   KQ++ +    
Sbjct: 829 ---NLDF-----EQLPRHFIFSNCYRFSSQVIAEFVEKGLVASLARA---KQEELI---- 873

Query: 408 DYHNPPRGCVSYP-GSEIPEWFSYQSMGSSVTLELPPGWVNNNFVGFALCAIVP---DHH 463
                P   +  P  +     F  Q+  +++T  +P  W+     GF++  +V    D+H
Sbjct: 874 ---KAPEVIICIPMDTRQRSSFRLQAGRNAMTDLVP--WMQKPISGFSMSVVVSFQDDYH 928

Query: 464 GDTRGFTVRCILKTK------DDIAVCFLYVWEDYFGVNSSIESDHVLLGYDFSVS-SDS 516
            D  G  +RC+   K      D I   F   W         + +DH+ + YD  +  SDS
Sbjct: 929 NDV-GLRIRCVGTWKTWNNQPDRIVERFFQCWAPTEA--PKVVADHIFVLYDTKMHPSDS 985

Arabidopsis thaliana (taxid: 3702)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 89.4 bits (220), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 148/304 (48%), Gaps = 43/304 (14%)

Query: 48  LRYFQWDGYPLKSLPSKNIP-EHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSR 106
           L+    +  PL+ LP+     + L SL + ++ +E+L +G+  L ALK L+L    +L R
Sbjct: 295 LQRLTIEDSPLEQLPAGFADLDQLASLSLSNTKLEKLSSGIGQLPALKSLSLQDNPKLER 354

Query: 107 IPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVL 166
           +P  SL   +E L L+G      IH+                     LP+   + SL+ L
Sbjct: 355 LPK-SLG-QVEELTLIGG----RIHA---------------------LPSASGMSSLQKL 387

Query: 167 YLGGCSNLKRFLEISC--NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNS 224
            +   S  K   +     N+ ++ LS T + +LP+SIGNL  L  L L +  +L S+  S
Sbjct: 388 TVDNSSLAKLPADFGALGNLAHVSLSNTKLRDLPASIGNLFTLKTLSLQDNPKLGSLPAS 447

Query: 225 LCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAIS---------QNLVDMSLV 275
              L  LQ L L+G  ++ +LP  +G   SL+ +  ++TA++         +NL  +SL 
Sbjct: 448 FGQLSGLQELTLNGN-RIHELP-SMGGASSLQTLTVDDTALAGLPADFGALRNLAHLSLS 505

Query: 276 DCGITELPESLGRSPSLKFLNLAEN-DFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPC 334
           +  + ELP + G   +LK L+L  N     +PSS+  LS L  LTL+N   +  LP +  
Sbjct: 506 NTQLRELPANTGNLHALKTLSLQGNQQLATLPSSLGYLSGLEELTLKNSS-VSELPPMGP 564

Query: 335 GSNI 338
           GS +
Sbjct: 565 GSAL 568

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2

 Score = 89.4 bits (220), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 147/336 (43%), Gaps = 82/336 (24%)

Query: 35  VRHSRCLESFFNELRYFQWDGYPLKS--LPSKNIPEHL-----VSLEMPHSNIEQLWNGV 87
           +  +R LES+F+  R   W  Y  K+       + EHL       + +P  +++   N  
Sbjct: 570 IHGARKLESYFD--RVKDWKDYKGKNKNFAQLQLLEHLDFSETKIIRLPIFHLKDSTNDF 627

Query: 88  QNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIH---------------- 131
             +  L RL L  C +L R+P L    NL+ LD  G   L+E+                 
Sbjct: 628 STMPILTRLLLRNCTRLKRLPQLRPLTNLQILDACGATDLVEMLEVCLEEKKELRILDMS 687

Query: 132 -----------SSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKR---- 176
                      + + +LNKL+  N   C  ++ LP+   L  L+V  + GC  LK     
Sbjct: 688 KTSLPELADTIADVVNLNKLLLRN---CSLIEELPSIEKLTHLEVFDVSGCIKLKNINGS 744

Query: 177 FLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFL 236
           F E+S  +  ++LSET + ELP  I  LS L  L +  CS+LK++ N L  L +L+   +
Sbjct: 745 FGEMSY-LHEVNLSETNLSELPDKISELSNLKELIIRKCSKLKTLPN-LEKLTNLEIFDV 802

Query: 237 SGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLN 296
           SGC +LE +    G+ E+L                                    L  +N
Sbjct: 803 SGCTELETIE---GSFENL----------------------------------SCLHKVN 825

Query: 297 LAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPEL 332
           L+E +  ++P+ I +LSNL  L L+NC +L++LP L
Sbjct: 826 LSETNLGELPNKISELSNLKELILRNCSKLKALPNL 861

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7KRY7|LAP4_DROME Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1

 Score = 87.0 bits (214), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 98/348 (28%), Positives = 166/348 (47%), Gaps = 36/348 (10%)

Query: 16  RRLRFF-KFYNSFPEMNKCKVRHSRCLESFF---NELRYFQWDGYPLKSL---------- 61
           R++ F  K + S P++ +  +R+SR LE  F   N +R    + + L  L          
Sbjct: 13  RQVEFVDKRHCSLPQVPEEILRYSRTLEELFLDANHIRDLPKNFFRLHRLRKLGLSDNEI 72

Query: 62  ----PSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPD-LSLALNL 116
               P     E+LV L++  ++I  + + +++L +L+  + S    + ++P   S   NL
Sbjct: 73  GRLPPDIQNFENLVELDVSRNDIPDIPDDIKHLQSLQVADFS-SNPIPKLPSGFSQLKNL 131

Query: 117 EWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGIN-LDSLKVLYLGG--CSN 173
             L L    SL  + +    L +L  L L   + LK LP  I+ L  LK L LG     +
Sbjct: 132 TVLGL-NDMSLTTLPADFGSLTQLESLELRENL-LKHLPETISQLTKLKRLDLGDNEIED 189

Query: 174 LKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQY 233
           L  +L     +  L L    ++ LP  +G L++L  LD++  +RL+ + N +  L SL  
Sbjct: 190 LPPYLGYLPGLHELWLDHNQLQRLPPELGLLTKLTYLDVSE-NRLEELPNEISGLVSLTD 248

Query: 234 LFLSGCLKLEKLPEEIGNLESLKIMLANETAIS---------QNLVDMSLVDCGITELPE 284
           L L+  L LE LP+ I  L  L I+  ++  +          +N+ ++ L +  ++ELP 
Sbjct: 249 LDLAQNL-LEALPDGIAKLSRLTILKLDQNRLQRLNDTLGNCENMQELILTENFLSELPA 307

Query: 285 SLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPEL 332
           S+G+   L  LN+  N  E +P  I Q +NL  L+L++ K  +  PEL
Sbjct: 308 SIGQMTKLNNLNVDRNALEYLPLEIGQCANLGVLSLRDNKLKKLPPEL 355

Required for polarization of the embryonic, imaginal disk and follicular epithelia. Specifically restricts apical membrane determinants to the apical cell surface; acts to exclude crb from the basolateral domain and define adherens junction position. Regulates cellular growth and differentiation; acts as a tumor suppressor. Essential for odor guided behavior.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	583
15234388	1219	TIR-NBS-LRR class disease resistance pro	0.941	0.450	0.356	2e-84
225460354	1174	PREDICTED: TMV resistance protein N-like	0.951	0.472	0.368	3e-83
297813715	1212	hypothetical protein ARALYDRAFT_327329 [	0.939	0.452	0.351	2e-81
227438275	1226	disease resistance protein [Brassica rap	0.939	0.446	0.364	4e-81
147768286	1206	hypothetical protein VITISV_033530 [Viti	0.910	0.440	0.359	4e-79
359493483	1274	PREDICTED: TMV resistance protein N-like	0.929	0.425	0.346	2e-78
359496026	1250	PREDICTED: TMV resistance protein N-like	0.888	0.414	0.366	3e-78
297794743	1184	predicted protein [Arabidopsis lyrata su	0.854	0.420	0.362	6e-78
240256011	1210	TIR-NBS-LRR class disease resistance pro	0.950	0.457	0.349	9e-78
359493487	1162	PREDICTED: TMV resistance protein N-like	0.866	0.434	0.360	4e-77

>gi|15234388|ref|NP_192938.1| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana] gi|4586106|emb|CAB40942.1| putative disease resistance protein (TMV N-like) [Arabidopsis thaliana] gi|7267902|emb|CAB78244.1| putative disease resistance protein (TMV N-like) [Arabidopsis thaliana] gi|332657683|gb|AEE83083.1| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 222/623 (35%), Positives = 324/623 (52%), Gaps = 74/623 (11%)

Query: 1    GSEAIEGISLDMFRMRRLR-------------FFKFYNSFPEMN---KCKVRHSRCLESF 44
            G++ I GI LD  ++R +R             + K Y+S        + K+   R L   
Sbjct: 537  GTDKIRGIFLDTSKLRAMRLSAKAFQGMYNLKYLKIYDSHCSRGCEAEFKLHLRRGLSFL 596

Query: 45   FNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQL 104
             NEL Y  W GYPL+S+P    P++LV L++PHS +E++W+  +++  LK ++LS+   L
Sbjct: 597  PNELTYLHWHGYPLQSIPLDFDPKNLVDLKLPHSQLEEIWDDEKDVGMLKWVDLSHSINL 656

Query: 105  SRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLK 164
             +   L+ A NLE L+L GC SL ++ S+I  L KL++LNL  C SL+SLP GI   SL+
Sbjct: 657  RQCLGLANAHNLERLNLEGCTSLKKLPSTINCLEKLIYLNLRDCTSLRSLPKGIKTQSLQ 716

Query: 165  VLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNS 224
             L L GCS+LK+F  IS N+E L L  T I+ LP SI    RL  L+L NC +LK +S+ 
Sbjct: 717  TLILSGCSSLKKFPLISENVEVLLLDGTVIKSLPESIQTFRRLALLNLKNCKKLKHLSSD 776

Query: 225  LCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ----------------- 267
            L  LK LQ L LSGC +LE  PE   ++ESL+I+L ++T+I++                 
Sbjct: 777  LYKLKCLQELILSGCSQLEVFPEIKEDMESLEILLMDDTSITEMPKMMHLSNIKTFSLCG 836

Query: 268  -------------------NLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSS 308
                                L D+ L  C + +LP+++G   SL+ L L+ N+ E +P S
Sbjct: 837  TSSHVSVSMFFMPPTLGCSRLTDLYLSRCSLYKLPDNIGGLSSLQSLCLSGNNIENLPES 896

Query: 309  IKQLSNLLFLTLQNCKRLQSLPELPCGSNIF-ARYCTSLETLSNLSTLFTRSSELWQAFD 367
              QL+NL +  L+ CK L+SLP LP       A  C SLETL+N  T  T    +   F 
Sbjct: 897  FNQLNNLKWFDLKFCKMLKSLPVLPQNLQYLDAHECESLETLANPLTPLTVGERIHSMFI 956

Query: 368  FCNCFKLNRNEIGEIVDGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEW 427
            F NC+KLN++    +V  A  K Q+MA    ++     Y  +   P   + YP +EIP W
Sbjct: 957  FSNCYKLNQDAQASLVGHARIKSQLMANASAKR----YYRGFVPEPLVGICYPATEIPSW 1012

Query: 428  FSYQSMGSSVTLELPPGWVNNNFVGFALCAIV--PDHHGDTRGFTVRCI--LKTKDDIAV 483
            F +Q +G S+ + LPP W + NFVG AL  +V   D+    + F+V+C    + KD    
Sbjct: 1013 FCHQRLGRSLEIPLPPHWCDINFVGLALSVVVSFKDYEDSAKRFSVKCCGNFENKDSSFT 1072

Query: 484  CFLYV---WEDYFGVNS----SIESDHVLLGYDFSVSSDSFGGSNSEFC-----IQFYIQ 531
             F +    W +  G  S     + SDHV +GY+      +  G ++  C      +FY+ 
Sbjct: 1073 RFDFTLAGWNEPCGSLSHESRKLTSDHVFMGYNSCFLVKNVHGESNSCCYTKASFEFYVT 1132

Query: 532  HFEG-PGIEGFDVKKCGAHLIYV 553
              E    IE  +V KCG  L+YV
Sbjct: 1133 DDETRKKIETCEVIKCGMSLMYV 1155

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460354|ref|XP_002263146.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 242/656 (36%), Positives = 344/656 (52%), Gaps = 101/656 (15%)

Query: 1    GSEAIEGISLDMFRMRRLRFFKFYNSFPEMNKCKV------RHSRCLESFFNELRYFQWD 54
            G+EA+EG+ LD+   + L F     +F EMN+ +V      + +  L+   N LR   W 
Sbjct: 534  GTEAVEGLVLDLSASKELHFSA--GAFTEMNRLRVLRFYNVKMNGNLKFLSNNLRSLYWH 591

Query: 55   GYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLAL 114
             YPLKSLPS   P+ LV L M  S +EQLW G ++   LK + LS+ + L+R PD S A 
Sbjct: 592  EYPLKSLPSNFHPKKLVELNMCSSRLEQLWKGDKSFEKLKFIKLSHSQYLTRTPDFSGAP 651

Query: 115  NLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNL 174
            NLE L L GC S++++H SI  L KL+FLNL  C +LKS  + I+++SL++L L GCS L
Sbjct: 652  NLERLILEGCTSMVKVHPSIGALQKLIFLNLEGCKNLKSFASSIHMNSLQILTLSGCSKL 711

Query: 175  KRFLEISCNIENLD---LSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSL 231
            K+F E+  N+++L    L ETA+ ELPSSIG L+ LV L+LTNC +L S+  SLC L SL
Sbjct: 712  KKFPEMLENMKSLRQLLLDETALRELPSSIGRLNGLVLLNLTNCKKLVSLPQSLCKLTSL 771

Query: 232  QYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ---------NLVDMSLVDCGITEL 282
            Q L L+GC +L+KLP+E+G+L  L  + A+ + I +         NL  +SL  C    +
Sbjct: 772  QILTLAGCSELKKLPDELGSLRCLVNLNADGSGIQEVPPSITLLTNLQVLSLAGCKKRNV 831

Query: 283  PESLGRSP-------------SLKFLNLAE-------------------------NDFEK 304
              SL  SP             S+K L+L++                         N+F  
Sbjct: 832  VFSLWSSPTVCLQLRSLLNLSSVKTLSLSDCNLSEGALPSDLSSLSSLESLDLSKNNFIT 891

Query: 305  IPSSIKQLSNLLFLTLQNCKRLQSLPELPCG-SNIFARYCTSLETLSNLSTLFTRSSELW 363
            IP+S+ +LS LL+L+L +CK LQS+PELP     ++A +C SLET S  +    + ++L 
Sbjct: 892  IPASLNRLSQLLYLSLSHCKSLQSVPELPSTIQKVYADHCPSLETFSLSACASRKLNQL- 950

Query: 364  QAFDFCNCFKLNRNEIGEIVDGALKKIQVMATWWKQQD-----PVTLYEDYHNPPRGCVS 418
              F F +CF+L  NE  + V   L+ IQ+ ++  K  D     PV  Y D+H      V 
Sbjct: 951  -NFTFSDCFRLVENEHSDTVGAILQGIQLASSIPKFVDANKGSPVP-YNDFH------VI 1002

Query: 419  YPGSEIPEWFSYQSMGSSVTLELPPGWVNNNFVGFALCAIVPDHHGD--TRGFTVRCILK 476
             PGS IPEWF +Q+MGSSVT+ELPP W N   +G A+CA+    H D    G+    + +
Sbjct: 1003 VPGSSIPEWFIHQNMGSSVTVELPPHWYNAKLMGLAVCAVF---HADPIDWGYLQYSLYR 1059

Query: 477  TKDDIAVCFLYVWEDYFGVNSSIESDHVLLGYDFSVSSDS----FGGSN-------SEFC 525
             +       L  W       S ++ DHV  GY   V  +     FG  +       S  C
Sbjct: 1060 GEHKYDSYMLQTW-------SPMKGDHVWFGYQSLVGQEDDRMWFGERSGTLKILFSGHC 1112

Query: 526  IQFYIQHFEGPGIEGFDVKKCGAHLIYVQ-DPSKRSAFTFFNLFGDNISNSECEVP 580
            I+  I   +   +    VKKCG  L Y Q D     +F +  ++      SE  +P
Sbjct: 1113 IKSCIVCVQPEVV----VKKCGVRLAYEQGDKDGECSFPYGTIWLGEGHESESPLP 1164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813715|ref|XP_002874741.1| hypothetical protein ARALYDRAFT_327329 [Arabidopsis lyrata subsp. lyrata] gi|297320578|gb|EFH51000.1| hypothetical protein ARALYDRAFT_327329 [Arabidopsis lyrata subsp. lyrata]

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 219/623 (35%), Positives = 320/623 (51%), Gaps = 75/623 (12%)

Query: 1    GSEAIEGISLDMFRMRRLR-------------FFKFYNSFPEMN---KCKVRHSRCLESF 44
            G++ I GI LD  ++R +R             + K Y+S        + K+   + L+  
Sbjct: 526  GTDKIRGIFLDTSKLRAMRLSAKALKGMYNLKYLKIYDSHCSRGCEVEFKLHLRKGLDYL 585

Query: 45   FNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQL 104
             NEL Y  W GYPL+S+P    P++LV L++PHS + ++W+  ++   LK ++LS+   L
Sbjct: 586  PNELTYLHWHGYPLQSIPLDFDPKNLVDLKLPHSQLAEIWDDEKDAGMLKWVDLSHSLNL 645

Query: 105  SRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLK 164
             +   L+ A NLE L+L GC SL ++ ++I  L KLV+LNL  C SL+SLP G+   SL+
Sbjct: 646  HQCLGLANAQNLERLNLEGCTSLKKLPTTINGLEKLVYLNLRDCTSLRSLPKGLKTQSLQ 705

Query: 165  VLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNS 224
             L L GCS LK+F  IS N+E L L  TAI+ LP SI  L RL  L+L NC +LK +S+ 
Sbjct: 706  TLILSGCSRLKKFPLISENVEVLLLDGTAIKSLPESIETLRRLALLNLKNCKKLKHLSSD 765

Query: 225  LCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ----------------- 267
            L  LK LQ L LSGC +LE  PE   ++ESL+I+L ++TAI++                 
Sbjct: 766  LYKLKCLQELILSGCSRLEVFPEIKEDMESLEILLMDDTAITEMPKMMHLSNIQTFSLCG 825

Query: 268  -------------------NLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSS 308
                                L D+ L  C + +LP+++G   SL+ L L+ N+ E +P S
Sbjct: 826  TSSQVSVSMFFMPPTLGCSRLTDLYLSRCSLYKLPDNIGGLSSLQSLCLSGNNIENLPES 885

Query: 309  IKQLSNLLFLTLQNCKRLQSLPELPCGSNIF-ARYCTSLETLSNLSTLFTRSSELWQAFD 367
              QL NL +  L+ CK L+SLP LP       A  C SLETL N  T  T    +   F 
Sbjct: 886  FNQLHNLKWFDLKFCKMLKSLPVLPQNLQYLDAHECESLETLENPLTPLTVGERIHSMFI 945

Query: 368  FCNCFKLNRNEIGEIVDGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEW 427
            F NC+KLN+ +   +V  A  K Q+MA    ++     Y  +   P   + Y  ++IP W
Sbjct: 946  FSNCYKLNQ-DAQSLVGHARIKSQLMANASVKR----YYRGFIPEPLVGICYAATDIPSW 1000

Query: 428  FSYQSMGSSVTLELPPGWVNNNFVGFALCAIVP--DHHGDTRGFTVRCILK--TKDDIAV 483
            F +Q +G S+ + LPP W + +FVG AL  +V   D+    + F+V+C  K   +D    
Sbjct: 1001 FCHQRLGRSLEIPLPPHWCDTDFVGLALSVVVSFMDYEDSAKRFSVKCCGKFENQDGSFT 1060

Query: 484  CFLYV---WEDYFGVNS----SIESDHVLLGYDFSVSSDSFGGSNSEFC-----IQFYIQ 531
             F +    W +  G  S     + SDHV +GY+      +  G +   C      +FY+ 
Sbjct: 1061 RFDFTLAGWNEPCGSLSHEPRKLASDHVFMGYNSCFHVKNLHGESKNCCYTKASFEFYVT 1120

Query: 532  HFEG-PGIEGFDVKKCGAHLIYV 553
              E    IE  +V KCG  L+YV
Sbjct: 1121 DDETRKKIETCEVIKCGMSLVYV 1143

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227438275|gb|ACP30627.1| disease resistance protein [Brassica rapa subsp. pekinensis]

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 229/628 (36%), Positives = 324/628 (51%), Gaps = 80/628 (12%)

Query: 1    GSEAIEGISLDM-------------FRMRRLRFFKFYNSFPEM---NKCKVRHSRCLESF 44
            G+  I GI LDM              RM  L+F KFYNS       N C++R  + L+ F
Sbjct: 530  GTAEIRGIFLDMSNVDSMKLSADIFARMWNLKFLKFYNSHCSKWCENDCRLRFPKGLDCF 589

Query: 45   FNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQL 104
             +EL Y  W GYPL+ LPS   P+ LV L + +SNI QL    +N   L+ ++LSY K+L
Sbjct: 590  PDELVYLHWQGYPLEYLPSNFNPKKLVYLNLRYSNIMQLCEDEKNTGELRWVDLSYSKEL 649

Query: 105  SRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLK 164
              +  L  A  LE L+L  C SL +  S+I+ ++ LV LNL  CI+LKSLP  I+L SLK
Sbjct: 650  MNLTGLLEARKLERLNLENCTSLTKC-SAIRQMDSLVSLNLRDCINLKSLPKRISLKSLK 708

Query: 165  VLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNS 224
             + L GCS LK+F  IS NIE+L L  TA++ +P SI NL +L  L+L  CSRL  +  +
Sbjct: 709  FVILSGCSKLKKFPTISENIESLYLDGTAVKRVPESIENLQKLTVLNLKKCSRLMHLPTT 768

Query: 225  LCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQN---------------- 268
            LC LKSL+ L LSGC KLE  P+   ++ESL+I+L ++TAI Q                 
Sbjct: 769  LCKLKSLKELLLSGCSKLESFPDINEDMESLEILLMDDTAIKQTPRKMDMSNLKLFSFGG 828

Query: 269  -------------------LVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSI 309
                               L DM L DC + +LP+S      L+ L L+ N+ + +P SI
Sbjct: 829  SKVHDLTCLELLPFSGCSRLSDMYLTDCNLYKLPDSFSCLSLLQTLCLSRNNIKNLPGSI 888

Query: 310  KQLSNLLFLTLQNCKRLQSLPELPCGSNIF-ARYCTSLETLSNLSTLFTRSSELWQAFDF 368
            K+L +L  L L++C++L SLP LP       A  C SLET++   TL   +      F F
Sbjct: 889  KKLHHLKSLYLKHCQQLVSLPVLPSNLQYLDAHGCISLETVAKPMTLLVVAERNQSTFVF 948

Query: 369  CNCFKLNRNEIGEIVDGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEWF 428
             +CFKLNR+    IV     K Q++     Q++   L  +    P    S+PG+++P WF
Sbjct: 949  TDCFKLNRDAQESIVAHTQLKSQILGNGSLQRNHKGLVSE----PLASASFPGNDLPLWF 1004

Query: 429  SYQSMGSSVTLELPPGWVNNNFVGFALCAIV--PDHHGDTRGFTVRCILKTKDDIAVCFL 486
             +Q MGSS+   LPP W ++ F+G +LC +V   D+   T  F+V C  K +++   C  
Sbjct: 1005 RHQRMGSSMETHLPPHWCDDKFIGLSLCVVVSFKDYVDKTNRFSVICKCKFRNEDGDCIS 1064

Query: 487  YV-----WEDYFGVNSSIE-------SDHVLLGYD----FSVSSDSFGGSNSEFCIQFYI 530
            +      W++  G +SS E       SDHV + Y+       S D     N+    +F++
Sbjct: 1065 FTCNLGGWKEQCGSSSSREEEPRKLTSDHVFISYNNCFHAKKSHDLNRCCNTTASFKFFV 1124

Query: 531  QHFEGPGIEGFD---VKKCGAHLIYVQD 555
               +G      D   V KCG  L+Y  D
Sbjct: 1125 T--DGVSKRKLDCCEVVKCGMSLLYAPD 1150

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768286|emb|CAN64759.1| hypothetical protein VITISV_033530 [Vitis vinifera]

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 240/668 (35%), Positives = 334/668 (50%), Gaps = 137/668 (20%)

Query: 1    GSEAIEGISLDM-------------FRMRRLRFFKFYN---------------------- 25
            G+EA+EG+ LD+               M RLR  +FYN                      
Sbjct: 534  GTEAVEGLVLDLSASKELHXSAGAFTEMNRLRVLRFYNVKMNGSLEYLSEXELFDTTYHP 593

Query: 26   ---------SFPEMNK-CKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEM 75
                        EM   CK+  S  L+   N LR   W  YPLKSLPS   P+ LV L M
Sbjct: 594  WRWRAHEIQRADEMQTDCKLHLSGDLKFLSNNLRSLYWHEYPLKSLPSNFHPKKLVELNM 653

Query: 76   PHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQ 135
              S +E LW G ++   LK + LS+ + L+R PD S A NLE L L GC S++++H SI 
Sbjct: 654  CSSRLEXLWKGDKSFEKLKFIKLSHSQYLTRTPDFSGAPNLERLILEGCKSMVKVHPSIG 713

Query: 136  HLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLD---LSET 192
             L KL+FLNL  C +LKS  + I+++SL++L L GCS LK+F E+  N+++L    L ET
Sbjct: 714  ALQKLIFLNLXGCKNLKSFASSIHMNSLQILTLSGCSKLKKFPEMLENMKSLRQLLLDET 773

Query: 193  AIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNL 252
            A+ ELPSSIG L+ LV L+LTNC +L S+  SLC L SLQ L L+GC +L+KLP+E+G+L
Sbjct: 774  ALRELPSSIGRLNGLVLLNLTNCKKLVSLPQSLCKLTSLQILTLAGCSELKKLPDELGSL 833

Query: 253  ESLKIMLANETAISQ---------NLVDMSLVDCGITELPESLGRSP------------- 290
              L  + A+ + I +         NL  +SL  C    +  SL  SP             
Sbjct: 834  RCLVNLNADGSGIQEVPPSITLLTNLQVLSLAGCKKRNVVFSLWSSPTVCLQLRSLLNLS 893

Query: 291  SLKFLNLAE-------------------------NDFEKIPSSIKQLSNLLFLTLQNCKR 325
            S+K L+L++                         N+F  IP+S+ +LS LL+L+L +CK 
Sbjct: 894  SVKTLSLSDCNLSEGALPSDLSSLSSLESLDLSKNNFITIPASLNRLSQLLYLSLSHCKS 953

Query: 326  LQSLPELPCG-SNIFARYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKLNRNEIGEIVD 384
            LQS+PELP     ++A +C SLET S  +    + ++L   F F +CF+L  NE  + V 
Sbjct: 954  LQSVPELPSTIQKVYADHCPSLETFSLSACASRKLNQL--NFTFSDCFRLVENEHSDTVG 1011

Query: 385  GALKKIQVMATWWKQQD-----PVTLYEDYHNPPRGCVSYPGSEIPEWFSYQSMGSSVTL 439
              L+ IQ+ ++  K  D     PV  Y D+H      V  PGS IPEWF +Q+MGSSVT+
Sbjct: 1012 AILQGIQLASSIPKFVDANKGSPVP-YNDFH------VIVPGSSIPEWFIHQNMGSSVTV 1064

Query: 440  ELPPGWVNNNFVGFALCAIVPDHHGD--TRGFTVRCILKTKDDIAVCFLYVWEDYFGVNS 497
            ELPP W N   +G A+CA+    H D    G+    + + +       L  W       S
Sbjct: 1065 ELPPHWYNAKLMGLAVCAVF---HADPIDWGYLQYSLYRGEHKYDSYMLQTW-------S 1114

Query: 498  SIESDHVLLGYDFSVSSDS----FGGSN-------SEFCIQFYIQHFEGPGIEGFDVKKC 546
             ++ DHV  GY   V  +     FG  +       S  CI+  J   +   +    VKKC
Sbjct: 1115 PMKGDHVWFGYQSLVGXEDDRMWFGERSGTXKILFSGHCIKSCJVCVQPEVV----VKKC 1170

Query: 547  GAHLIYVQ 554
            G  L Y Q
Sbjct: 1171 GVRLAYEQ 1178

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493483|ref|XP_003634610.1| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 230/664 (34%), Positives = 317/664 (47%), Gaps = 122/664 (18%)

Query: 1    GSEAIEGISLDM-------------FRMRRLRFFKFYN-----SFPEMNKCKV---RHSR 39
            G+EA+EGI LD+              +M+RLR  K  N     S   ++K ++    H  
Sbjct: 526  GTEAVEGIFLDLSASKELNFSIDAFTKMKRLRLLKICNVQIDRSLGYLSKKELIAYTHDV 585

Query: 40   CLESFF-----------------NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQ 82
             +E  +                 N LR   W GYPLKS PS   PE LV L M  S ++Q
Sbjct: 586  WIERNYLYTQNKLHLYEDSKFLSNNLRDLYWHGYPLKSFPSNFHPEKLVELNMCFSRLKQ 645

Query: 83   LWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVF 142
             W G +    LK + LS+ + L++IPD S   NL  L L GC SL+E+H SI  L KL+F
Sbjct: 646  PWEGKKGFEKLKSIKLSHSQHLTKIPDFSGVPNLRRLILKGCTSLVEVHPSIGALKKLIF 705

Query: 143  LNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIE---NLDLSETAIEELPS 199
            LNL  C  LKS  + I+++SL++L L GCS LK+F E+  N+E   NL L  TAI+ LP 
Sbjct: 706  LNLEGCKKLKSFSSSIHMESLQILTLSGCSKLKKFPEVQGNMEHLPNLSLEGTAIKGLPL 765

Query: 200  SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIML 259
            SI NL+ L  L+L  C  L+S+  S+  LKSL+ L LSGC +L+ LP+ +G+L+ L  + 
Sbjct: 766  SIENLTGLALLNLKECKSLESLPRSIFKLKSLKTLILSGCSELKDLPDNLGSLQCLTELN 825

Query: 260  ANETAISQ---------NLVDMSLVDCGITE----------------------------- 281
            A+ + + +         NL  +SL  C   E                             
Sbjct: 826  ADGSGVQEVPPSITLLTNLQILSLAGCKGGESKSRNMIFSFHSSPTEELRLPSFSGLYSL 885

Query: 282  --------------LPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQ 327
                          LP  LG  PSL+ L+L+ N F  IP+S+  LS L  LTL+ CK LQ
Sbjct: 886  RVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQ 945

Query: 328  SLPELPCG-SNIFARYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKLNRNEIGEIVDGA 386
            SLPELP    ++ A  CTSLET +  S+ +T        F+F NCF+L  N+  +IV   
Sbjct: 946  SLPELPSSVESLNAHSCTSLETFTCSSSAYTSKKFGDLRFNFTNCFRLGENQGSDIVGAI 1005

Query: 387  LKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEWFSYQSMGSSVTLELPPGWV 446
            L+ IQ+M++  K   P       HN     V  PG+ IPEWF +QS+G SV +ELP  W 
Sbjct: 1006 LEGIQLMSSIPKFLVPDRGIPTPHNEYNALV--PGNRIPEWFRHQSVGCSVNIELPQHWY 1063

Query: 447  NNNFVGFALCAIVPDHHGDTRG--------FTVRCILKTKDDIAVCFLYVWEDYFGVNSS 498
            N   +G A CA + +  G   G        F + C L   D      L+        +  
Sbjct: 1064 NTKLMGLAFCAAL-NFKGAMDGNPGTEPSSFGLVCYL--NDCFVETGLHSLYTPPEGSKF 1120

Query: 499  IESDHVLLGYDFSVSSDSFGGSNSEFCIQFYIQHFEGPGIEGF-------DVKKCGAHLI 551
            IESDH L  Y           +  E C+  + +      +  F       +VKKCG  L+
Sbjct: 1121 IESDHTLFEY--------ISLARLEICLGNWFRKLSDNVVASFALTGSDGEVKKCGIRLV 1172

Query: 552  YVQD 555
            Y +D
Sbjct: 1173 YEED 1176

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496026|ref|XP_002277166.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 237/647 (36%), Positives = 326/647 (50%), Gaps = 129/647 (19%)

Query: 1    GSEAIEGISLDMF-------------RMRRLRFFKFYNS-------FPEMNKCKVR-HSR 39
            G+E IEGI L+++              M++LR  K YNS       +   N+   R  S+
Sbjct: 539  GTENIEGIFLNLYGLKEIHYTTEAFAEMKKLRLLKVYNSHNSGDFEYASRNENYKRPFSQ 598

Query: 40   CLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLS 99
              E   N+LRY  W  YPLKSLPS   P++LV L +    +E+LW GV+++  L+ ++LS
Sbjct: 599  DFEFPSNKLRYLYWHRYPLKSLPSNFHPKNLVELNLCCCYVEELWKGVKHMEKLECIDLS 658

Query: 100  YCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGIN 159
            + + L R PD S   NLE L   GC  L E+H S+  L+KL+FLNL  C +L+  P+ I 
Sbjct: 659  HSQYLVRTPDFSGIPNLERLIFEGCTDLREVHQSLGVLSKLIFLNLKDCKNLQCFPSSIE 718

Query: 160  LDSLKVLYLGGCSNLKRFLEISCNIENLD---LSETAIEELPSSIGNLSRLVRLDLTNCS 216
            L+SLKVL L GCS L  F EI  N+E L    L  TAI+ELP S+ +L+ LV L+L NC 
Sbjct: 719  LESLKVLILSGCSKLDNFPEILENMEGLRELFLDGTAIKELPLSVEHLNGLVLLNLRNCE 778

Query: 217  RLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ--------- 267
            RL ++ +S+CNLKSL  L LSGC +LEKLPE +GNLE L  ++A+ +A+ Q         
Sbjct: 779  RLITLPSSICNLKSLSTLTLSGCSQLEKLPENLGNLECLVELVADGSAVIQPPSSIVLLR 838

Query: 268  NLVDMSLVDCG----------------ITELPESLG-RSP-------------------- 290
            NL  +S   C                 +  + +S G R P                    
Sbjct: 839  NLKVLSFQGCNGSPSSRWNSRFWSMLCLRRISDSTGFRLPSLSGLCSLKQLNLSDCNIKE 898

Query: 291  ------------SLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSN- 337
                        SL++LNL  NDF  +P+ I +L NL  L L  CKRLQ LP LP   N 
Sbjct: 899  GALPNDLGGYLSSLEYLNLKGNDFVTLPTGISKLCNLKALYLGCCKRLQELPMLPPNINR 958

Query: 338  IFARYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKLNRNEIGEIVDGALKKIQVMATWW 397
            I A+ CTSLETLS L      S+  W A  F N F+ N                     W
Sbjct: 959  INAQNCTSLETLSGL------SAPCWLA--FTNSFRQN---------------------W 989

Query: 398  KQQDPVTLYEDYHNPPRGCVSYPGSEIPEWFSYQSMGSSVTLELPPGWVNNNFVGFALCA 457
             Q+   T   +    P+     PG+ IPEWF  Q MG S+ ++LP  W N+NF+GFA+C 
Sbjct: 990  GQE---TYLAEVSRIPKFNTYLPGNGIPEWFRNQCMGDSIMVQLPSHWYNDNFLGFAMCI 1046

Query: 458  I--VPDHHGDTRGFTVRCILKTKD---DIAVCFL--YVWEDYFGVNSSIESDHVLLGY-- 508
            +  + + +  +RG  + C L++ D       CFL   VWE +   +  +ESDH+ LGY  
Sbjct: 1047 VFALKEPNQCSRG-AMLCELESSDLDPSNLGCFLDHIVWEGHSDGDGFVESDHLWLGYHP 1105

Query: 509  DFSVSSDSFGGSNSEFCIQFYIQHFEGPGIEGFDVKKCGAHLIYVQD 555
            +F +  D     N    I+     F   GI   +VK CG  L+Y++D
Sbjct: 1106 NFPIKKDDMDWPNKLSHIK---ASFVIAGIP-HEVKWCGFRLVYMED 1148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794743|ref|XP_002865256.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297311091|gb|EFH41515.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 202/558 (36%), Positives = 290/558 (51%), Gaps = 60/558 (10%)

Query: 55   GYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLAL 114
            GYPL+ LPS   P+ LV L + HS+++ LW   +N A L+ L++S+ K L  +  L  A 
Sbjct: 491  GYPLEYLPSNFNPKKLVDLNLRHSHLKTLWEEEKNTAELRWLDISHSKDLLSLSGLLDAR 550

Query: 115  NLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNL 174
            N+E L+   C SLI+  SSI+ ++ LV+LN   C SLKSLP GI+L SLK L L GCS L
Sbjct: 551  NIERLNAECCTSLIKC-SSIRQMDSLVYLNFRECTSLKSLPKGISLKSLKSLILSGCSKL 609

Query: 175  KRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYL 234
            + F  IS NIE+L L  TAI+ +P SI +L  L  L+L  C +L+ + ++LC +KSLQ L
Sbjct: 610  RTFPTISENIESLYLDGTAIKRVPESIDSLRYLAVLNLKKCCKLRHLPSNLCKMKSLQEL 669

Query: 235  FLSGCLKLEKLPEEIGNLESLKIMLANETAISQ--------------------------- 267
             LSGC KL+  PE   ++E L+I+L ++TAI Q                           
Sbjct: 670  ILSGCSKLKCFPEIDEDMEHLEILLMDDTAIKQIPIKMCMSNLKMFTFGGSKFQGSTGYE 729

Query: 268  --------NLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLT 319
                    +L D+ L DC + +LP +     S+  L L+ N+ E +P SIK L +L  L 
Sbjct: 730  LLPFSGCSHLSDLYLTDCNLHKLPNNFSCLSSVHSLCLSRNNLEYLPESIKILHHLKSLD 789

Query: 320  LQNCKRLQSLPELPCGSNIF-ARYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKLNRNE 378
            L++C++L SLP LP       A  C SLET++N  T    +  +   F F +CFKLNR  
Sbjct: 790  LKHCRKLNSLPVLPSNLQYLDAHDCASLETVANPMTHLVLAERVQSTFLFTDCFKLNREA 849

Query: 379  IGEIVDGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEWFSYQSMGSSVT 438
               IV  A  K Q++A    +++   L  +    P   VS+PGS++P WF  Q MG+S+ 
Sbjct: 850  QENIVAHAQLKSQILANACLKRNHKGLVLE----PLASVSFPGSDLPLWFRNQRMGTSID 905

Query: 439  LELPPGWVNNNFVGFALCAIV--PDHHGDTRGFTVRCILKTKDDIAVCFLYV-----WED 491
              LPP W ++ F G +LC +V   D+   T  F+V C  K K +   C  ++     W  
Sbjct: 906  THLPPHWCDSKFRGLSLCVVVSFKDYEDQTSRFSVICKCKFKSESGDCIRFICTLGGWNK 965

Query: 492  YFGVNS----SIESDHVLLGYDFSVSSDSF---GGSNSEFC-----IQFYIQHFEGPGIE 539
              G +      + SDHV L Y+       F   G  N+  C      +F++       + 
Sbjct: 966  LCGSSGHQSRKLGSDHVFLSYNNCFHVKKFREDGNDNNRCCNTAASFKFFVTDDSKRKLG 1025

Query: 540  GFDVKKCGAHLIYVQDPS 557
             F+V KCG  L+Y  D S
Sbjct: 1026 SFEVVKCGMGLLYAPDES 1043

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256011|ref|NP_193686.5| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana] gi|332658792|gb|AEE84192.1| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 221/632 (34%), Positives = 321/632 (50%), Gaps = 78/632 (12%)

Query: 1    GSEAIEGISLDMFRMRR-------------LRFFKFYNSFPEM---NKCKVRHSRCLESF 44
            G+E + GI L+M  +RR             L+F KF++S       N    + S+  + F
Sbjct: 528  GTECVRGIFLNMSEVRRIKLFPAAFTMLSKLKFLKFHSSHCSQWCDNDHIFQCSKVPDHF 587

Query: 45   FNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQL 104
             +EL Y  W GYP   LPS   P+ LV L + +S+I+QLW   +N  +L+ ++L   K L
Sbjct: 588  PDELVYLHWQGYPYDCLPSDFDPKELVDLSLRYSHIKQLWEDEKNTESLRWVDLGQSKDL 647

Query: 105  SRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLK 164
              +  LS A NLE LDL GC SL ++  S++ +N+L++LNL  C SL+SLP G  + SLK
Sbjct: 648  LNLSGLSRAKNLERLDLEGCTSL-DLLGSVKQMNELIYLNLRDCTSLESLPKGFKIKSLK 706

Query: 165  VLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNS 224
             L L GC  LK F  IS +IE+L L  TAIE +   I +L  L+ L+L NC +LK + N 
Sbjct: 707  TLILSGCLKLKDFHIISESIESLHLEGTAIERVVEHIESLHSLILLNLKNCEKLKYLPND 766

Query: 225  LCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQN---------------- 268
            L  LKSLQ L LSGC  LE LP     +E L+I+L + T+I Q                 
Sbjct: 767  LYKLKSLQELVLSGCSALESLPPIKEKMECLEILLMDGTSIKQTPEMSCLSNLKICSFCR 826

Query: 269  -------------------LVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSI 309
                               L D+ L +C I +LP+      SL+ L L+ N+ E +P SI
Sbjct: 827  PVIDDSTGLVVLPFSGNSFLSDLYLTNCNIDKLPDKFSSLRSLRCLCLSRNNIETLPESI 886

Query: 310  KQLSNLLFLTLQNCKRLQSLPELPCGSNIF-ARYCTSLETLSNLSTLFTRSSELWQAFDF 368
            ++L +LL L L++C RL+SLP LP       A  C SLE +S   T+   +  +   F F
Sbjct: 887  EKLYSLLLLDLKHCCRLKSLPLLPSNLQYLDAHGCGSLENVSKPLTIPLVTERMHTTFIF 946

Query: 369  CNCFKLNRNEIGEIVDGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEWF 428
             +CFKLN+ E  +IV  A  K Q++A   +  +   L  D    P   V +PG +IP WF
Sbjct: 947  TDCFKLNQAEKEDIVAQAQLKSQLLARTSRHHNHKGLLLD----PLVAVCFPGHDIPSWF 1002

Query: 429  SYQSMGSSVTLELPPGWVNNNFVGFALCAIV--PDHHG-DTRGFTVRCILKTKDD----I 481
            S+Q MGS +  +L P W N+ F+G +LC +V   DH G      +VRC  K K      I
Sbjct: 1003 SHQKMGSLIETDLLPHWCNSKFIGASLCVVVTFKDHEGHHANRLSVRCKSKFKSQNGQFI 1062

Query: 482  AVCF-LYVWEDYFGVN----SSIESDHVLLGYD------FSVSSDSFGGSN---SEFCIQ 527
            +  F L  W +  G +      + SDHV + Y+      F  S ++  G+    +    +
Sbjct: 1063 SFSFCLGGWNESCGSSCHEPRKLGSDHVFISYNNCNVPVFKWSEETNEGNRCHPTSASFE 1122

Query: 528  FYIQHFEGPGIEGFDVKKCGAHLIYVQDPSKR 559
            FY+       +E  ++ +CG + +Y +D + R
Sbjct: 1123 FYLTDETERKLECCEILRCGMNFLYARDENDR 1154

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493487|ref|XP_003634612.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 219/607 (36%), Positives = 300/607 (49%), Gaps = 102/607 (16%)

Query: 1    GSEAIEGISLDM-------------FRMRRLRFFKF---------------------YNS 26
            G+EA+EGI LD+              +M+RLR  K                      ++ 
Sbjct: 532  GTEAVEGIFLDLSESKELNFSIDAFTKMKRLRLLKICNVQIDRSLGYLSKKELIAYTHDV 591

Query: 27   FPEMNKCKVRHSRCL--ESFF--NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQ 82
            + E N    ++   L  +S F  N LR   W GYPLKS PS   PE LV L M  S ++Q
Sbjct: 592  WTERNYLYTQNKLHLYEDSKFLSNNLRDLYWHGYPLKSFPSNFHPEKLVELNMCFSRLKQ 651

Query: 83   LWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVF 142
            LW G +    LK + LS+ + L++ PD S   NL  L L GC SL+E+H SI  L KL+F
Sbjct: 652  LWEGKKGFEKLKSIKLSHSQHLTKTPDFSGVPNLRRLILKGCTSLVEVHPSIGALKKLIF 711

Query: 143  LNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIE---NLDLSETAIEELPS 199
            LNL  C  LKS  + I+++SL++L L GCS LK+F E+  N+E   NL L  TAI+ LP 
Sbjct: 712  LNLEGCKKLKSFSSSIHMESLQILTLSGCSKLKKFPEVQGNMEHLPNLSLEGTAIKGLPL 771

Query: 200  SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIML 259
            SI NL+ L  L+L  C  L+S+  S+  LKSL+ L L GC +L++LP+++G+L+ L  + 
Sbjct: 772  SIENLTGLALLNLKECKSLESLPRSIFKLKSLKTLTLCGCSELKELPDDLGSLQCLAELN 831

Query: 260  ANETAISQ---------NLVDMSLVD---------------------------------- 276
            A+ + I +         NL  +SL                                    
Sbjct: 832  ADGSGIQEVPPSITLLTNLQKLSLAGCKGGDSKSRNMVFSFHSSPTEELRLPSFSGLYSL 891

Query: 277  -------CGITE--LPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQ 327
                   C ++E  LP  LG  PSL+ L+L+ N F  IP+S+  LS L  LTL+ CK LQ
Sbjct: 892  RVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRSLTLEYCKSLQ 951

Query: 328  SLPELPCG-SNIFARYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKLNRNEIGEIVDGA 386
            SLPELP    ++ A  CTSLET S  S  +T        F+F NCF+L  N+  +IV   
Sbjct: 952  SLPELPSSVESLNAHSCTSLETFSCSSGAYTSKKFGDLRFNFTNCFRLGENQGSDIVGAI 1011

Query: 387  LKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEWFSYQSMGSSVTLELPPGWV 446
            L+ IQ+M++  K   P  +    HN     V  PGS IPEWF +QS+G SV +ELPP W 
Sbjct: 1012 LEGIQLMSSIPKFLVPWGI-PTPHNEYNALV--PGSRIPEWFRHQSVGCSVNIELPPHWY 1068

Query: 447  NNNFVGFALCAIVP-----DHHGDTRGFTVRCILKTKDDIAVCFLYVWEDYFGVNSSIES 501
            N   +G A CA +      D +  T   +   +    D      L+        +  IES
Sbjct: 1069 NTKLMGLAFCAALNFKGAMDGYPGTEPSSFGLVCYLNDCFVETGLHSLYTPLEGSKFIES 1128

Query: 502  DHVLLGY 508
            DH L  Y
Sbjct: 1129 DHTLFEY 1135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	583
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.487	0.219	0.445	4.4e-69
TAIR|locus:2122209	1179	AT4G36150 [Arabidopsis thalian	0.881	0.435	0.317	3e-62
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.813	0.375	0.337	3.8e-62
TAIR|locus:2153328	1231	AT5G45230 [Arabidopsis thalian	0.867	0.411	0.322	3.3e-58
TAIR|locus:2827639	1195	AT2G17060 [Arabidopsis thalian	0.766	0.374	0.336	2.6e-56
TAIR|locus:2153072	1229	AT5G51630 [Arabidopsis thalian	0.346	0.164	0.465	4.5e-50
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.502	0.240	0.416	1.1e-48
TAIR|locus:2170333	1197	CSA1 "constitutive shade-avoid	0.488	0.238	0.414	1.7e-47
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.497	0.239	0.409	1.8e-46
TAIR|locus:2122985	1167	AT4G19530 [Arabidopsis thalian	0.387	0.193	0.396	8.9e-46

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 4.4e-69, Sum P(2) = 4.4e-69
 Identities = 130/292 (44%), Positives = 185/292 (63%)

Query:    47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSR 106
             +LRY +WDGYPLK++PS+  PE LV L M +SN+E+LW+G+Q L  LK+++LS CK L  
Sbjct:   581 KLRYLRWDGYPLKTMPSRFFPEFLVELCMSNSNLEKLWDGIQPLRNLKKMDLSRCKYLVE 640

Query:   107 IPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVL 166
             +PDLS A NLE L+L  C SL+E+  SI++L  L    L  CI LK +P GI L SL+ +
Sbjct:   641 VPDLSKATNLEELNLSYCQSLVEVTPSIKNLKGLSCFYLTNCIQLKDIPIGIILKSLETV 700

Query:   167 YLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLC 226
              + GCS+LK F EIS N   L LS T IEELPSSI  LS LV+LD+++C RL+++ + L 
Sbjct:   701 GMSGCSSLKHFPEISWNTRRLYLSSTKIEELPSSISRLSCLVKLDMSDCQRLRTLPSYLG 760

Query:   227 NLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLA------NE-TAISQNLVDMSLVDCGI 279
             +L SL+ L L GC +LE LP+ + NL SL+ +        NE   +S ++  + + +  I
Sbjct:   761 HLVSLKSLNLDGCRRLENLPDTLQNLTSLETLEVSGCLNVNEFPRVSTSIEVLRISETSI 820

Query:   280 TELPESLGRSPSLKFLNLAEND-FEKIPSSIKQLSNLLFLTLQNCKRLQSLP 330
              E+P  +     L+ L+++EN     +P SI +L +L  L L  C  L+S P
Sbjct:   821 EEIPARICNLSQLRSLDISENKRLASLPVSISELRSLEKLKLSGCSVLESFP 872

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122209 AT4G36150 [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 171/539 (31%), Positives = 271/539 (50%)

Query:    34 KVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAAL 93
             K+     LE   +E+RY  W  +PL  LP    P++L    +P+S IE+LW G ++   L
Sbjct:   595 KLNFPEGLEFPLDEIRYLYWLKFPLMKLPKDFNPKNLTDFNLPYSEIEELWEGAKDTQKL 654

Query:    94 KRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKS 153
             K ++LS+ ++L  +  L  A +L+ L+L GC SL E+   ++ +  L+FLN+  C SL+ 
Sbjct:   655 KWVDLSHSRKLCNLSGLLNAESLQRLNLEGCTSLEELPREMKRMKSLIFLNMRGCTSLRV 714

Query:   154 LPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLT 213
             LP  +NL SLK L L  CS++++F  IS N+E L L  TAI +LP+ +  L +L+ L+L 
Sbjct:   715 LPR-MNLISLKTLILTNCSSIQKFQVISDNLETLHLDGTAIGKLPTDMVKLQKLIVLNLK 773

Query:   214 NCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMS 273
             +C  L +V   L  LK+LQ L LSGC KL+     I  ++ L+I+L + TA+ +    + 
Sbjct:   774 DCKMLGAVPEFLGKLKALQELVLSGCSKLKTFSVPIETMKCLQILLLDGTALKEMPKLLR 833

Query:   274 LVDCGITELPE---SLGRSPSLKFLNLAENDF-EKIPSSIKQLSNLLFLTLQNCKRLQSL 329
                  + +LPE    +    SL+ L L+ N+    +   I QL +L +L L+ CK L S+
Sbjct:   834 FNSSRVEDLPELRRGINGLSSLRRLCLSRNNMISNLQIDINQLYHLKWLDLKYCKNLTSI 893

Query:   330 PELPCGSNIF-ARYCXXXXXXXXXXXXXXRSSELWQAFDFCNCFKLNRNEIGEIVDGALK 388
             P LP    I  A  C                 ++   F F NC  L +     I   A +
Sbjct:   894 PLLPPNLEILDAHGCEKLKTVASPMALLKLMEQVQSKFIFTNCNNLEQVAKNSITSYAQR 953

Query:   389 KIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEWFSYQSMGSSVTLELPPGWVNN 448
             K Q+ A    ++  V+  E        C  +PGS++P WF+YQ+ GS++ L+LPP W +N
Sbjct:   954 KSQLDARRCYKEGGVS--EALFI---AC--FPGSDVPSWFNYQTFGSALRLKLPPHWCDN 1006

Query:   449 NFVGFALCAIV--PDHHGDTRGFTVRCILKTKDDIAVC--FLYVWEDYFGVNSSIESDHV 504
                  ALCA+V  PD   +   F++ C  + K+++  C  F       +  +  I+SDHV
Sbjct:  1007 RLSTIALCAVVTFPDTQDEINRFSIECTCEFKNELGTCIRFSCTLGGSWIESRKIDSDHV 1066

Query:   505 LLGYXXXXXXXXXXXXXXEF-----CIQFYIQHFEGPGIEGF-DVKKCGAHLIYVQDPS 557
              +GY              +      C+       E   I+G  ++  CG  L+Y ++P+
Sbjct:  1067 FIGYTSSSHITKHLEGSLKLKEHDKCVPTEAS-IEFEVIDGAGEIVNCGLSLVY-EEPN 1123

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 169/501 (33%), Positives = 260/501 (51%)

Query:    29 EMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQ 88
             E    K+     LE    ELRY  W  YP K+LP    P++L+ L++P+S IEQ+W   +
Sbjct:   600 EAEDSKLNFPEGLEFLPQELRYLNWLKYPEKNLPINFDPKNLIDLKLPYSQIEQIWEEEK 659

Query:    89 NLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRC 148
             + + L+ L+L++  +L  +  LS A  L+ ++L GC  L  +   +Q++  L+FLNL  C
Sbjct:   660 DTSNLQWLDLNHSSKLHSLSGLSRAQKLQSINLEGCTGLKTLPQVLQNMESLMFLNLRGC 719

Query:   149 ISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLV 208
              SL+SLP  I L  L+ L L  CS  K F  I+ N+E L L  TAI+ELPS+IG+L +L+
Sbjct:   720 TSLESLPD-ITLVGLRTLILSNCSRFKEFKLIAKNLEELYLDGTAIKELPSTIGDLQKLI 778

Query:   209 RLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ- 267
              L L +C  L S+ +S+ NLK++Q + LSGC  LE  PE   NL+ LK +L + TAI + 
Sbjct:   779 SLKLKDCKNLLSLPDSIGNLKAIQEIILSGCSSLESFPEVNQNLKHLKTLLLDGTAIKKI 838

Query:   268 -NLV-----DMSLV----DCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLF 317
              +++     D  L     +C + E P  +    S++ L+L+ N+F  +P SI  L +L +
Sbjct:   839 PDILHHLSPDQGLTSSQSNCHLCEWPRGIYGLSSVRRLSLSSNEFRILPRSIGYLYHLNW 898

Query:   318 LTLQNCKRLQSLPELPCGSN-IFARYCXXXXXXXXXXXXXXRSSE-LWQAFDFCNCFKLN 375
             L L++CK L S+P LP     + A  C                +E L   F F NC KL 
Sbjct:   899 LDLKHCKNLVSVPMLPPNLQWLDAHGCISLETISILSDPLLAETEHLHSTFIFTNCTKLY 958

Query:   376 RNEIGEIVDGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEWFSYQSMGS 435
             + E   I     KKIQ+M+    + +     +         + +PG ++P WF+++++G 
Sbjct:   959 KVEENSIESYPRKKIQLMSNALARYEKGLALDVLIG-----ICFPGWQVPGWFNHRTVGL 1013

Query:   436 SVTLELPPGWVNNNFVGFALCAIVP--DHHGDTRGFTVRCILK-TKDDIAV----CFLYV 488
              +   LP  W      G ALCA+V   D+        V C  +  K+D  +    C L  
Sbjct:  1014 ELKQNLPRHWNAGGLAGIALCAVVSFKDYISKNNRLLVTCSGEFKKEDKTLFQFSCILGG 1073

Query:   489 WEDYFGVNS-SIESDHVLLGY 508
             W ++    +  I+SDHV +GY
Sbjct:  1074 WTEHGSYEAREIKSDHVFIGY 1094

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153328 AT5G45230 [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 3.3e-58, P = 3.3e-58
 Identities = 175/542 (32%), Positives = 266/542 (49%)

Query:    24 YNSF-PEMNK--CKVRHSRCLE-SFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSN 79
             Y+S  P  +K  CK+     LE    N +R   W  +P   LP    P +L+ L +P+SN
Sbjct:   587 YSSLCPTHSKTECKLHLPDGLEFPKDNIVRCLHWVKFPGTELPPDFYPNNLIDLRLPYSN 646

Query:    80 IEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNK 139
             I  LW+  +    LK ++LS+   L+ +  LS A NL  L+L GC SL E+   ++ +  
Sbjct:   647 ITTLWSCTKVAPNLKWVDLSHSSNLNSLMGLSEAPNLLRLNLEGCTSLKELPDEMKDMTN 706

Query:   140 LVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPS 199
             LVFLNL  C SL SLP  I  +SLK L L GCS+ + F  IS ++E+L L+ T I  LP 
Sbjct:   707 LVFLNLRGCTSLLSLPK-ITTNSLKTLILSGCSSFQTFEVISEHLESLYLNGTEINGLPP 765

Query:   200 SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIML 259
             +IGNL RL+ L+L +C  L ++ + L  LKSLQ L LS C KL+  P+    +ESL ++L
Sbjct:   766 AIGNLHRLIFLNLKDCKNLATLPDCLGELKSLQELKLSRCSKLKIFPDVTAKMESLLVLL 825

Query:   260 ANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAEND-FEKIPSSIKQLSNLLFL 318
              + T+I+              ELP S+    SL+ L L+ ND    +   +  + +L +L
Sbjct:   826 LDGTSIA--------------ELPCSIFHLSSLRRLCLSRNDNIRTLRFDMGHMFHLKWL 871

Query:   319 TLQNCKRLQSLPELPCGSNIF-ARYCXXXXXXXXXXXXXXRSSELWQAFDFCNCFKLNRN 377
              L+ CK L SLP LP       A  C               + ++   F F NC +L + 
Sbjct:   872 ELKYCKNLTSLPILPPNLQCLNAHGCTSLRTVASPQTLPTPTEQIHSTFIFTNCHELEQV 931

Query:   378 EIGEIVDGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEWFSYQSMGSSV 437
                 I+    KK ++M+    +  P  +Y+        C  +PG EIP WF++Q++GS +
Sbjct:   932 SKNAIISYVQKKSKLMSA--DRYSPDFVYKSLIGT---C--FPGCEIPAWFNHQALGSVL 984

Query:   438 TLELPPGWVNNNFVGFALCAIVP--DHHGDTRGFTVRCILK-TKDDIAVCFLYV--WEDY 492
              LELP  W ++  +G ALC +V   ++        V+C  + T   ++     V  W + 
Sbjct:   985 ILELPQAWNSSRIIGIALCVVVSFKEYRDQNSSLQVQCTCEFTNVSLSQESFMVGGWSEQ 1044

Query:   493 FGVNSSIESDHVLLGYXXXXXXXXXXXX--XXEFCIQFYIQHFEGPGIEGFDVKKCGAHL 550
                  ++ESDH+ +GY                E  ++F + +     +E   V KCG  L
Sbjct:  1045 GDETHTVESDHIFIGYTTLLNIKNRQQFPLATEISLRFQVTNGTSE-VEKCKVIKCGFSL 1103

Query:   551 IY 552
             +Y
Sbjct:  1104 VY 1105

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827639 AT2G17060 [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.6e-56, P = 2.6e-56
 Identities = 157/466 (33%), Positives = 244/466 (52%)

Query:    33 CKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAA 92
             CK+     L+     +RY  W  +PLK L     P++L+ L +P+S I +LW   + ++ 
Sbjct:   623 CKLTFPDGLKCSMENVRYLYWLQFPLKKLSKAFNPKNLIELNLPYSKITRLWKESKEISK 682

Query:    93 LKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLK 152
             LK ++LS+  +L  I  L  A N+  L+L GC  L  +   +Q +  L++LNLG C  L 
Sbjct:   683 LKWVDLSHSSELCDISGLIGAHNIRRLNLEGCIELKTLPQEMQEMESLIYLNLGGCTRLV 742

Query:   153 SLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDL 212
             SLP    L SLK L L  C N ++F  IS  +E L L  TAI+ +P+SI NL +L+ LDL
Sbjct:   743 SLPE-FKLKSLKTLILSHCKNFEQFPVISECLEALYLQGTAIKCIPTSIENLQKLILLDL 801

Query:   213 TNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDM 272
              +C  L S+ + L NL+SLQ L LSGC KL+  PE    ++S+KI+L + TAI Q  + +
Sbjct:   802 KDCEVLVSLPDCLGNLRSLQELILSGCSKLKFFPELKETMKSIKILLLDGTAIKQMPILL 861

Query:   273 SLVDC-GIT----ELPESLGRS--PS-LKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCK 324
               +   G +     LP SL     PS L  L L+ ND E + ++I QL +L +L L+NCK
Sbjct:   862 QCIQSQGHSVANKTLPNSLSDYYLPSSLLSLCLSGNDIESLHANISQLYHLKWLDLKNCK 921

Query:   325 RLQSLPELPCGSNIF-ARYCXXXXXXXXXXXXXXRSSELWQAFDFCNCFKLNRNEIGEIV 383
             +L+S+  LP       A  C               + ++   + F NC KL++     I+
Sbjct:   922 KLKSVSVLPPNLKCLDAHGCDSLEEVGSPLAVLMVTGKIHCTYIFTNCNKLDQVAESNII 981

Query:   384 DGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEWFSYQSMGSSVTLELPP 443
                 +K Q+M+    + +   + E   +    C  +PG E+P  F +Q+ G+ +  +LP 
Sbjct:   982 SFTWRKSQMMSDALNRYNGGFVLESLVST---C--FPGCEVPASFDHQAYGALLQTKLPR 1036

Query:   444 GWVNNNFVGFALCAIV--PDHHGDTRGFTVRCILK--TKDDIAVCF 485
              W ++   G ALCA++  PD+   +  F V+C  +  T+D   + F
Sbjct:  1037 HWCDSRLTGIALCAVILFPDYQHQSNRFLVKCTCEFGTEDGPCISF 1082

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153072 AT5G51630 [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 4.5e-50, Sum P(2) = 4.5e-50
 Identities = 94/202 (46%), Positives = 127/202 (62%)

Query:    46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLS 105
             + L + +WD  PLKSLPS    EHLVSL M HS +E+LW G Q    L  ++LS  ++L 
Sbjct:   739 SRLTHLRWDFCPLKSLPSNFRQEHLVSLHMTHSKLEKLWEGAQPFGNLVNIDLSLSEKLK 798

Query:   106 RIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKV 165
               P+LS   NL+ LDL GC SL+ + SSIQ L+KL  LN+ RC  L++LPT +NL+SL  
Sbjct:   799 EFPNLSKVTNLDTLDLYGCKSLVTVPSSIQSLSKLTELNMRRCTGLEALPTDVNLESLHT 858

Query:   166 LYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSL 225
             L L GCS L  F +IS NIE L L +TAIEE+PS I +   L  L +  C RL+++S S+
Sbjct:   859 LDLSGCSKLTTFPKISRNIERLLLDDTAIEEVPSWIDDFFELTTLSMKGCKRLRNISTSI 918

Query:   226 CNLKSLQYLFLSGCLKLEKLPE 247
             C LK ++    S C +L +  +
Sbjct:   919 CELKCIEVANFSDCERLTEFDD 940

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 519 (187.8 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 129/310 (41%), Positives = 187/310 (60%)

Query:    37 HSRCLESFF-NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKR 95
             H R   SF  NEL Y  W GYPL+S+P    P++LV L++PHS +E++W+  +++  LK 
Sbjct:   588 HLRRGLSFLPNELTYLHWHGYPLQSIPLDFDPKNLVDLKLPHSQLEEIWDDEKDVGMLKW 647

Query:    96 LNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLP 155
             ++LS+   L +   L+ A NLE L+L GC SL ++ S+I  L KL++LNL  C SL+SLP
Sbjct:   648 VDLSHSINLRQCLGLANAHNLERLNLEGCTSLKKLPSTINCLEKLIYLNLRDCTSLRSLP 707

Query:   156 TGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNC 215
              GI   SL+ L L GCS+LK+F  IS N+E L L  T I+ LP SI    RL  L+L NC
Sbjct:   708 KGIKTQSLQTLILSGCSSLKKFPLISENVEVLLLDGTVIKSLPESIQTFRRLALLNLKNC 767

Query:   216 SRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ--NLVDMS 273
              +LK +S+ L  LK LQ L LSGC +LE  PE   ++ESL+I+L ++T+I++   ++ +S
Sbjct:   768 KKLKHLSSDLYKLKCLQELILSGCSQLEVFPEIKEDMESLEILLMDDTSITEMPKMMHLS 827

Query:   274 LVD----CGITE--------LPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQ 321
              +     CG +         +P +LG S  L  L L+     K+P +I  LS+L  L L 
Sbjct:   828 NIKTFSLCGTSSHVSVSMFFMPPTLGCS-RLTDLYLSRCSLYKLPDNIGGLSSLQSLCLS 886

Query:   322 NCKRLQSLPE 331
                 +++LPE
Sbjct:   887 G-NNIENLPE 895

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2170333 CSA1 "constitutive shade-avoidance1" [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 1.7e-47, P = 1.7e-47
 Identities = 123/297 (41%), Positives = 179/297 (60%)

Query:    46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLS 105
             NE+RY  W  +PLK +P    P +LV L++P+S IE++W   ++   LK +NL++ K+L+
Sbjct:   615 NEVRYLHWLKFPLKEVPQDFNPGNLVDLKLPYSEIERVWEDNKDAPKLKWVNLNHSKKLN 674

Query:   106 RIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKV 165
              +  L  A NL+ L+L GC +L E+H  ++++  LVFLNL  C SLKSLP  I L SLK 
Sbjct:   675 TLAGLGKAQNLQELNLEGCTALKEMHVDMENMKFLVFLNLRGCTSLKSLPE-IQLISLKT 733

Query:   166 LYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSL 225
             L L GCS  K F  IS  +E L L  TAI+ELP  IG L RLV L++  C +LK + +SL
Sbjct:   734 LILSGCSKFKTFQVISDKLEALYLDGTAIKELPCDIGRLQRLVMLNMKGCKKLKRLPDSL 793

Query:   226 CNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVD-C-----GI 279
               LK+L+ L LSGC KL + PE  GN+  L+I+L +ETAI      +S+   C      I
Sbjct:   794 GQLKALEELILSGCSKLNEFPETWGNMSRLEILLLDETAIKDMPKILSVRRLCLNKNEKI 853

Query:   280 TELPESLGRSPSLKFLNLAENDFEKIPSSIKQLS-NLLFLTLQNCKRLQSLPE-LPC 334
             + LP+ L +   L++L+L    + K  + + QL  NL +L +  C  L+++ + L C
Sbjct:   854 SRLPDLLNKFSQLQWLHLK---YCKNLTHVPQLPPNLQYLNVHGCSSLKTVAKPLVC 907

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
 Identities = 126/308 (40%), Positives = 173/308 (56%)

Query:    38 SRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLN 97
             S+  + F +EL Y  W GYP   LPS   P+ LV L + +S+I+QLW   +N  +L+ ++
Sbjct:   581 SKVPDHFPDELVYLHWQGYPYDCLPSDFDPKELVDLSLRYSHIKQLWEDEKNTESLRWVD 640

Query:    98 LSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTG 157
             L   K L  +  LS A NLE LDL GC SL ++  S++ +N+L++LNL  C SL+SLP G
Sbjct:   641 LGQSKDLLNLSGLSRAKNLERLDLEGCTSL-DLLGSVKQMNELIYLNLRDCTSLESLPKG 699

Query:   158 INLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSR 217
               + SLK L L GC  LK F  IS +IE+L L  TAIE +   I +L  L+ L+L NC +
Sbjct:   700 FKIKSLKTLILSGCLKLKDFHIISESIESLHLEGTAIERVVEHIESLHSLILLNLKNCEK 759

Query:   218 LKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ--------NL 269
             LK + N L  LKSLQ L LSGC  LE LP     +E L+I+L + T+I Q        NL
Sbjct:   760 LKYLPNDLYKLKSLQELVLSGCSALESLPPIKEKMECLEILLMDGTSIKQTPEMSCLSNL 819

Query:   270 VDMS----LVD--CGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC 323
                S    ++D   G+  LP S G S  L  L L   + +K+P     L +L  L L   
Sbjct:   820 KICSFCRPVIDDSTGLVVLPFS-GNS-FLSDLYLTNCNIDKLPDKFSSLRSLRCLCLSR- 876

Query:   324 KRLQSLPE 331
               +++LPE
Sbjct:   877 NNIETLPE 884

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122985 AT4G19530 [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 8.9e-46, Sum P(3) = 8.9e-46
 Identities = 90/227 (39%), Positives = 133/227 (58%)

Query:    41 LESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSY 100
             LE    E+R   W  +P   LP   IP++LV L++P+S I Q+W   ++   L+ ++L++
Sbjct:   615 LELPLEEVRCLHWLNFPKDELPQDFIPKNLVDLKLPYSKIRQIWREEKDAPKLRWVDLNH 674

Query:   101 CKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINL 160
               +L  +  LS ALNLE L+L GC +L  +    +++  LVFLNL  C  L+SLP  INL
Sbjct:   675 SSKLENLSGLSQALNLERLNLEGCTALKTLLLGPENMASLVFLNLKGCTGLESLPK-INL 733

Query:   161 DSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKS 220
              SLK L L  CSNL+ F  IS  +  L L  TAI+ LP  +  L+ LV+L + +C  L  
Sbjct:   734 RSLKTLILSNCSNLEEFWVISETLYTLYLDGTAIKTLPQDMVKLTSLVKLYMKDCEMLVK 793

Query:   221 VSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ 267
             +      LK LQ L  SGC +L  LP+ + N++ L+I+L + TAI++
Sbjct:   794 LPEEFDKLKVLQELVCSGCKRLSSLPDVMKNMQCLQILLLDGTAITK 840

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0009637 "response to blue light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT4G12010	disease resistance protein (TIR-NBS-LRR class), putative; disease resistance protein (TIR-NBS-LRR class), putative; FUNCTIONS IN- protein binding, transmembrane receptor activity, ATP binding; INVOLVED IN- signal transduction, defense response, apoptosis, innate immune response; LOCATED IN- intrinsic to membrane; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- NB-ARC (InterPro-IPR002182), Leucine-rich repeat (InterPro-IPR001611), Toll-Interleukin receptor (InterPro-IPR000157), Leucine-rich repeat 3 (InterPro-IPR011713); BEST Arabidopsi [...] (1219 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	DAR5	DAR5 (DA1-RELATED PROTEIN 5); zinc ion binding; DA1-RELATED PROTEIN 5 (DAR5); FUNCTIONS IN- zin [...] (702 aa)							•		0.827
	AT5G45490	disease resistance protein-related; disease resistance protein-related; FUNCTIONS IN- ATP bindi [...] (354 aa)							•		0.744
	DAR3	DAR3 (DA1-RELATED PROTEIN 3); DA1-RELATED PROTEIN 3 (DAR3); FUNCTIONS IN- molecular_function un [...] (450 aa)							•		0.718
	DAR7	DAR7 (DA1-RELATED PROTEIN 7); zinc ion binding; DA1-RELATED PROTEIN 7 (DAR7); FUNCTIONS IN- zin [...] (560 aa)							•		0.718
	AT5G45510	leucine-rich repeat family protein; leucine-rich repeat family protein; FUNCTIONS IN- protein b [...] (1222 aa)				•			•	•	0.456
	RQL-5	ATP-dependent DNA helicase, putative; ATP-dependent DNA helicase, putative; FUNCTIONS IN- helic [...] (911 aa)							•		0.435
	AT1G27850	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (1148 aa)							•		0.435
	AT1G21610	wound-responsive family protein; wound-responsive family protein; FUNCTIONS IN- molecular_funct [...] (684 aa)							•		0.435
	AT5G66900	disease resistance protein (CC-NBS-LRR class), putative; disease resistance protein (CC-NBS-LRR [...] (809 aa)				•			•	•	0.414
	AT5G48610	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (354 aa)							•		0.408

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	583
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-64
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	2e-13
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003
pfam07725	20	pfam07725, LRR_3, Leucine Rich Repeat	0.004

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  227 bits (580), Expect = 5e-64
 Identities = 168/518 (32%), Positives = 250/518 (48%), Gaps = 105/518 (20%)

Query: 1    GSEAIEGISLDM------------FR-MRRLRFFKFYNSFPEMNKCKVR-H-SRCLESFF 45
            G++ + GI+LD+            F+ MR L F KFY    +  K +VR H     +   
Sbjct: 530  GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKK-EVRWHLPEGFDYLP 588

Query: 46   NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLS 105
             +LR  +WD YPL+ +PS   PE+LV L+M  S +E+LW+GV +L  L+ ++L   K L 
Sbjct: 589  PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK 648

Query: 106  RIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKV 165
             IPDLS+A NLE L L  C+SL+E+ SSIQ+LNKL  L++ RC +L+ LPTGINL SL  
Sbjct: 649  EIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR 708

Query: 166  LYLGGCSNLKRFLEISCNIENLDLSETAIEELPSS--IGNLSRLV--------------- 208
            L L GCS LK F +IS NI  LDL ETAIEE PS+  + NL  L+               
Sbjct: 709  LNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQP 768

Query: 209  -------------RLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESL 255
                         RL L++   L  + +S+ NL  L++L +  C+ LE LP  I NLESL
Sbjct: 769  LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESL 827

Query: 256  KIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNL 315
                      S +L   S +       P+    S ++  LNL+    E++P  I++ SNL
Sbjct: 828  ---------ESLDLSGCSRLRT----FPDI---STNISDLNLSRTGIEEVPWWIEKFSNL 871

Query: 316  LFLTLQNCKRLQ----SLPELPCGSNIFARYCTSLETLS--NLSTLFTRSSELWQAF--- 366
             FL +  C  LQ    ++ +L     +    C +L   S     +    +++   +    
Sbjct: 872  SFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPS 931

Query: 367  ----DFCNCFKLNRNEIGEIVDGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGS 422
                +F NCF L+            + +    + +KQ                 +   G 
Sbjct: 932  TVCINFINCFNLD-----------QEALLQQQSIFKQ-----------------LILSGE 963

Query: 423  EIPEWFSYQSMGSSVT-LELPPGWVNNNFVGFALCAIV 459
            E+P +F++++ G+S+T + L        F  F  CA+V
Sbjct: 964  EVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVV 1001

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 71.9 bits (176), Expect = 2e-13
 Identities = 96/343 (27%), Positives = 136/343 (39%), Gaps = 36/343 (10%)

Query: 57  PLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAAL-------KRLNLSYCKQLSRIPD 109
            LKS  S N     V     +    Q  N     + L         LNLS    L     
Sbjct: 7   LLKSALSSNTL-REVLSSNTYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSS 65

Query: 110 LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLG 169
           LS  L+L+ L   G +SL +   ++ +L  L  L+L       ++   + L +L  L L 
Sbjct: 66  LSRLLSLDLLSPSGISSL-DGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLD 124

Query: 170 G--CSNLKRFLEIS-CNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLC 226
               +++   + +   N++ LDLS+  IE LPS + NL  L  LDL+    L  +   L 
Sbjct: 125 NNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLS 183

Query: 227 NLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESL 286
           NL +L  L LSG  K+  LP EI  L +L+ +      +S N          I EL  SL
Sbjct: 184 NLSNLNNLDLSGN-KISDLPPEIELLSALEELD-----LSNNS---------IIELLSSL 228

Query: 287 GRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKR--------LQSLPELPCGSNI 338
               +L  L L+ N  E +P SI  LSNL  L L N +         L +L EL    N 
Sbjct: 229 SNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNS 288

Query: 339 FARYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKLNRNEIGE 381
            +     +  L  L  L        +A +      L  N I  
Sbjct: 289 LSNALPLIALLLLLLELLLNLLLTLKALELKLNSILLNNNILS 331

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 60.0 bits (145), Expect = 1e-09
 Identities = 74/250 (29%), Positives = 112/250 (44%), Gaps = 37/250 (14%)

Query: 67  PEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLAL-NLEWLDLVGCA 125
             +L  L++  + IE L + ++NL  LK L+LS+   LS +P L   L NL  LDL G  
Sbjct: 139 KSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGN- 196

Query: 126 SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIE 185
            + ++   I+ L+ L  L+L     ++ L +           L    NL           
Sbjct: 197 KISDLPPEIELLSALEELDLSNNSIIELLSS-----------LSNLKNLSG--------- 236

Query: 186 NLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKL 245
            L+LS   +E+LP SIGNLS L  LDL+N  ++ S+S SL +L +L+ L LSG      L
Sbjct: 237 -LELSNNKLEDLPESIGNLSNLETLDLSNN-QISSIS-SLGSLTNLRELDLSGNSLSNAL 293

Query: 246 P---------EEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLN 296
           P         E + NL      L  +        +  ++  G T  PE+L    SL  L 
Sbjct: 294 PLIALLLLLLELLLNLLLTLKALELKLNSILLNNN--ILSNGETSSPEALSILESLNNLW 351

Query: 297 LAENDFEKIP 306
             +N  ++  
Sbjct: 352 TLDNALDESN 361

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 15/150 (10%)

Query: 183 NIENLDLSETAIE-ELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLK 241
           N+E LDLS   +  E+P+ IG+ S L  LDL     +  + NSL NL SL++L L+    
Sbjct: 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200

Query: 242 LEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAEND 301
           + ++P E+G ++SLK +      +S              E+P  +G   SL  L+L  N+
Sbjct: 201 VGQIPRELGQMKSLKWIYLGYNNLS-------------GEIPYEIGGLTSLNHLDLVYNN 247

Query: 302 FE-KIPSSIKQLSNLLFLTLQNCKRLQSLP 330
               IPSS+  L NL +L L   K    +P
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 27/160 (16%)

Query: 198 PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKI 257
               G++  L  LDL+N      + N + +  SL+ L L G + + K+P  + NL SL+ 
Sbjct: 133 SIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192

Query: 258 MLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFE-KIPSSIKQLSNLL 316
           +    T  S  LV          ++P  LG+  SLK++ L  N+   +IP  I  L++L 
Sbjct: 193 L----TLASNQLVG---------QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Query: 317 FLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLF 356
            L L        +P             +SL  L NL  LF
Sbjct: 240 HLDLVYNNLTGPIP-------------SSLGNLKNLQYLF 266

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 183 NIENLDLSETAIEELP-SSIGNLSRLVRLDLTNCSRLKSVS-NSLCNLKSLQYLFLSGC 239
           N+++LDLS   +  +P  +   L  L  LDL+  + L S+S  +   L SL+ L LSG 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNN-LTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 184 IENLDLSETAIE-ELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKL 242
           +++++LS  +I   +P S+G+++ L  LDL+  S   S+  SL  L SL+ L L+G    
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503

Query: 243 EKLPEEIG 250
            ++P  +G
Sbjct: 504 GRVPAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.6 bits (95), Expect = 0.003
 Identities = 74/278 (26%), Positives = 118/278 (42%), Gaps = 48/278 (17%)

Query: 90  LAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRC 148
           +  L+ L+LS       IP D+    +L+ LDL G   + +I +S+ +L  L FL L   
Sbjct: 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198

Query: 149 ISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEISCNI------ENLDLS-ETAIEELPSS 200
             +  +P  +  + SLK +YLG  +NL    EI   I       +LDL        +PSS
Sbjct: 199 QLVGQIPRELGQMKSLKWIYLG-YNNLSG--EIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255

Query: 201 IGNLS------------------------RLVRLDLTNCSRLKSVSNSLCNLKSLQYLFL 236
           +GNL                         +L+ LDL++ S    +   +  L++L+ L L
Sbjct: 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315

Query: 237 SGCLKLEKLPEEIGNLESLKIMLANETAIS----------QNLVDMSLVDCGIT-ELPES 285
                  K+P  + +L  L+++       S           NL  + L    +T E+PE 
Sbjct: 316 FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375

Query: 286 LGRSPSLKFLNLAENDFE-KIPSSIKQLSNLLFLTLQN 322
           L  S +L  L L  N  E +IP S+    +L  + LQ+
Sbjct: 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD 413

Length = 968

>gnl|CDD|191828 pfam07725, LRR_3, Leucine Rich Repeat

 Score = 34.6 bits (81), Expect = 0.004
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 69 HLVSLEMPHSNIEQLWNGVQ 88
          +LV L + +S +E+LW G +
Sbjct: 1  NLVELNLRYSKLEKLWEGTK 20

This Pfam entry includes some LRRs that fail to be detected by the pfam00560 model. Length = 20

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	583
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.92
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.9
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.9
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.89
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.87
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.83
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.79
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.7
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.68
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.67
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.61
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.51
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.48
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.48
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.42
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.32
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.17
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.97
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.88
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.87
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.87
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.83
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.82
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.81
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.73
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.72
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.69
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.67
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.64
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.62
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.55
PLN03150	623	hypothetical protein; Provisional	98.41
PLN03150	623	hypothetical protein; Provisional	98.3
KOG4341	483	consensus F-box protein containing LRR [General fu	98.29
PRK15386	426	type III secretion protein GogB; Provisional	98.29
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.26
KOG4341	483	consensus F-box protein containing LRR [General fu	98.23
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.22
PRK15386	426	type III secretion protein GogB; Provisional	98.17
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.16
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.06
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.04
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.88
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.82
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.67
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.64
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.63
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.53
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.32
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.31
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.12
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.06
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.05
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.0
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.94
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.92
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.88
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.67
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.6
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.59
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.96
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.82
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.45
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.04
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.76
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.33
PF07725	20	LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Le	93.25
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.95
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.13
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.36
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.89
smart00370	26	LRR Leucine-rich repeats, outliers.	88.89
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.4
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.93
KOG4308	478	consensus LRR-containing protein [Function unknown	83.53

>PLN03210 Resistant to P

Probab=100.00  E-value=4.7e-54  Score=505.24  Aligned_cols=520  Identities=33%  Similarity=0.481  Sum_probs=370.9

Q ss_pred             CCcceEEEEEecC-------------CCCCcceEEEecCCCC-CCccceecCCcccccCCCccEEEecCCCCCCCCCCCC
Q 036772            1 GSEAIEGISLDMF-------------RMRRLRFFKFYNSFPE-MNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNI   66 (583)
Q Consensus         1 G~~~ve~i~ld~~-------------~m~~Lr~L~l~~~~~~-~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~   66 (583)
                      ||++|+||.+|++             +|++|++|+++.+.+. ......++|+++..+|.+||+|+|++|+++.+|+.|.
T Consensus       530 g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~  609 (1153)
T PLN03210        530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFR  609 (1153)
T ss_pred             ccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCC
Confidence            7899999999975             8999999999876421 1234578999999999999999999999999999999


Q ss_pred             CCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEcc
Q 036772           67 PEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLG  146 (583)
Q Consensus        67 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~  146 (583)
                      +++|++|+|++++++.+|.+++.+++|+.|+|++|..+..+|+++.+++|+.|+|++|..+..+|.+++++++|+.|+++
T Consensus       610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence            99999999999999999999999999999999999989999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCc------c
Q 036772          147 RCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLK------S  220 (583)
Q Consensus       147 ~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~------~  220 (583)
                      +|+.++.+|..+++++|+.|++++|..++.+|....+|+.|++++|.++.+|..+ .+++|+.|.+.++....      .
T Consensus       690 ~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~  768 (1153)
T PLN03210        690 RCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQP  768 (1153)
T ss_pred             CCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccc
Confidence            9999999999889999999999999999999999999999999999999998754 45556655555432110      0


Q ss_pred             c-cccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcc---------ccCccEEEeccCCC-cccCccCCCC
Q 036772          221 V-SNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAI---------SQNLVDMSLVDCGI-TELPESLGRS  289 (583)
Q Consensus       221 l-p~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i---------~~~L~~L~L~~~~l-~~lp~~l~~l  289 (583)
                      + +......++|+.|++++|..+..+|..++++++|+.|++++|..         ...|+.|++++|.. ..+|..   .
T Consensus       769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~  845 (1153)
T PLN03210        769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---S  845 (1153)
T ss_pred             cchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---c
Confidence            0 01111234555555555555555555555555555555555421         01255566666532 223332   2


Q ss_pred             CCCCEEEccCCCCcccChhhhccCcccccccccccccccCCCCCCCC----eeeeeCCcCcccccCcc---c-cccccc-
Q 036772          290 PSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGS----NIFARYCTSLETLSNLS---T-LFTRSS-  360 (583)
Q Consensus       290 ~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~----~l~~~~c~sL~~l~~l~---~-l~~~~~-  360 (583)
                      ++|+.|+|++|.++.+|.++..+++|+.|++++|++|+.+|.....+    .+...+|.+|+.++...   . .....+ 
T Consensus       846 ~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~  925 (1153)
T PLN03210        846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNI  925 (1153)
T ss_pred             cccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccc
Confidence            46666667666666666666666677777776666666665432221    44555666665432100   0 000000 


Q ss_pred             ----ccceeeeecccccCCccchhhhhHHHHHHHHHHhhhhccCCCccccccCCCCCceEEEccCCCCCCcccccCCCcE
Q 036772          361 ----ELWQAFDFCNCFKLNRNEIGEIVDGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEIPEWFSYQSMGSS  436 (583)
Q Consensus       361 ----~~~~~l~~~~C~~L~~~~~~~l~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~s  436 (583)
                          .....+.|.+|++|++.+.       +      +     ..          .....+++||.++|+||.||+.|++
T Consensus       926 ~~~~p~~~~l~f~nC~~L~~~a~-------l------~-----~~----------~~~~~~~l~g~evp~~f~hr~~g~s  977 (1153)
T PLN03210        926 HSKLPSTVCINFINCFNLDQEAL-------L------Q-----QQ----------SIFKQLILSGEEVPSYFTHRTTGAS  977 (1153)
T ss_pred             cccCCchhccccccccCCCchhh-------h------c-----cc----------ccceEEECCCccCchhccCCcccce
Confidence                0012346889999977531       1      1     00          1123478999999999999999999


Q ss_pred             EE-EEcCCCCCCCccceEEEEEEEecCCCC--CCceEEEEEEEEcCCCCeEEEEeEEeccCCCCccCCCeEEEEe-eccc
Q 036772          437 VT-LELPPGWVNNNFVGFALCAIVPDHHGD--TRGFTVRCILKTKDDIAVCFLYVWEDYFGVNSSIESDHVLLGY-DFSV  512 (583)
Q Consensus       437 i~-~~lp~~~~~~~~~gf~~c~v~~~~~~~--~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~dh~~~~~-~~~~  512 (583)
                      ++ |.+|+.|....|.||++|+|+++....  ...+.+.|.|+|+++.|++++. ....+........+|+++|. ....
T Consensus       978 l~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~ 1056 (1153)
T PLN03210        978 LTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFDS-PYQPHVFSVTKKGSHLVIFDCCFPL 1056 (1153)
T ss_pred             eeeeccCCcccCCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCCcccc-CCCceeEeeeccccceEEecccccc
Confidence            98 999999998889999999999887632  2367888899988877765432 00000011123455666555 2111


Q ss_pred             cccC---CCCCCceEEEEEEEeeecCCCcCCeEEEEeecEEEeecCCC
Q 036772          513 SSDS---FGGSNSEFCIQFYIQHFEGPGIEGFDVKKCGAHLIYVQDPS  557 (583)
Q Consensus       513 ~~~~---~~~~~~~~~~~f~~~~~~~~~~~~~~v~~cgv~~~~~~~~~  557 (583)
                      ..+.   .+..|+|++|+|.+.   +. ...++||+|||+++|+.+..
T Consensus      1057 ~~~~~~~~~~~~~~~~~~f~~~---~~-~~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210       1057 NEDNAPLAELNYDHVDIQFRLT---NK-NSQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred             cccccchhccCCceeeEEEEEe---cC-CCCeEEEeeeEEEeccCCCc
Confidence            1111   123589999999983   32 23489999999999966554

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=1.1e-28  Score=289.50  Aligned_cols=344  Identities=22%  Similarity=0.251  Sum_probs=274.0

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChh-hhcccccCCCC
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIE-QLWNGVQNLAA   92 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~-~l~~~~~~l~~   92 (583)
                      ++++|+.|++++|.     ....+|.++..-..+||+|++++|.+....+...+++|++|++++|.+. .+|..+..+++
T Consensus        91 ~l~~L~~L~Ls~n~-----~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~  165 (968)
T PLN00113         91 RLPYIQTINLSNNQ-----LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSS  165 (968)
T ss_pred             CCCCCCEEECCCCc-----cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCC
Confidence            78899999999885     3456787766333699999999998864433456789999999999987 67788999999


Q ss_pred             ccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecC
Q 036772           93 LKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGG  170 (583)
Q Consensus        93 L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~  170 (583)
                      |++|+|++|.....+| .+..+++|++|+|++|.....+|..++.+++|+.|+|++|.....+|..+ ++++|++|++++
T Consensus       166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  245 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY  245 (968)
T ss_pred             CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence            9999999998877777 48899999999999998888889999999999999999977667788877 899999999999


Q ss_pred             CCCccccccc---CCCcCEEeccCCCCc-cccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccc
Q 036772          171 CSNLKRFLEI---SCNIENLDLSETAIE-ELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLP  246 (583)
Q Consensus       171 c~~l~~~~~~---~~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp  246 (583)
                      |.....+|..   +.+|+.|++++|.+. .+|.++..+++|++|++++|.....+|..+.++++|+.|++++|...+..|
T Consensus       246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~  325 (968)
T PLN00113        246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP  325 (968)
T ss_pred             ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC
Confidence            8765555543   457888999999886 578888899999999999988877888888899999999999988888888


Q ss_pred             cccCCCCcccEEEccCCcccc----------CccEEEeccCCCcc-cCccCCCCCCCCEEEccCCCCc-ccChhhhccCc
Q 036772          247 EEIGNLESLKIMLANETAISQ----------NLVDMSLVDCGITE-LPESLGRSPSLKFLNLAENDFE-KIPSSIKQLSN  314 (583)
Q Consensus       247 ~~l~~l~~L~~L~l~~~~i~~----------~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~  314 (583)
                      ..+..+++|+.|++++|.+..          .|+.|++++|.+.+ +|..+..+++|+.|++++|.+. .+|..++.+++
T Consensus       326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~  405 (968)
T PLN00113        326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS  405 (968)
T ss_pred             hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence            888999999999999887753          28889999998875 7788888888999999888877 67888888888


Q ss_pred             ccccccccccccccCCC----CCCCCeeeeeCC-------cCcccccCccccccccccc
Q 036772          315 LLFLTLQNCKRLQSLPE----LPCGSNIFARYC-------TSLETLSNLSTLFTRSSEL  362 (583)
Q Consensus       315 L~~L~L~~c~~L~~lp~----lp~~~~l~~~~c-------~sL~~l~~l~~l~~~~~~~  362 (583)
                      |+.|++++|.--..+|.    ++....+...++       ..+..+++|+.+.+..+.+
T Consensus       406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~  464 (968)
T PLN00113        406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF  464 (968)
T ss_pred             CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCcee
Confidence            99999888854444442    222223333322       1233456666776665554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=1.2e-27  Score=280.89  Aligned_cols=344  Identities=22%  Similarity=0.248  Sum_probs=218.3

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCC-CCCCCC-CCCCceEEEccCCChh-hhcccccCC
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLK-SLPSKN-IPEHLVSLEMPHSNIE-QLWNGVQNL   90 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lp~~~-~~~~L~~L~L~~~~l~-~l~~~~~~l   90 (583)
                      ++++|++|++++|.     ....+|..+..+ .+|++|++++|.+. .+|..+ .+++|++|++++|.+. .+|..+.++
T Consensus       186 ~l~~L~~L~L~~n~-----l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  259 (968)
T PLN00113        186 NLTSLEFLTLASNQ-----LVGQIPRELGQM-KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL  259 (968)
T ss_pred             hCcCCCeeeccCCC-----CcCcCChHHcCc-CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence            67788888887775     344566677666 47777777777765 455554 6677777777777765 455666777


Q ss_pred             CCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEe
Q 036772           91 AALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYL  168 (583)
Q Consensus        91 ~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L  168 (583)
                      ++|+.|+|++|.....+| .+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|..+ .+++|+.|++
T Consensus       260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  339 (968)
T PLN00113        260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL  339 (968)
T ss_pred             CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence            777777777776555555 35666666666666666555566666666666666666655444555544 5666666666


Q ss_pred             cCCCCccccccc---CCCcCEEeccCCCC------------------------c-cccccccCCCCccEEeeeCCCCCcc
Q 036772          169 GGCSNLKRFLEI---SCNIENLDLSETAI------------------------E-ELPSSIGNLSRLVRLDLTNCSRLKS  220 (583)
Q Consensus       169 ~~c~~l~~~~~~---~~~L~~L~L~~~~i------------------------~-~lp~~i~~l~~L~~L~L~~~~~l~~  220 (583)
                      ++|.....+|..   ..+|+.|++++|.+                        . .+|..++.+++|+.|++++|.....
T Consensus       340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~  419 (968)
T PLN00113        340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE  419 (968)
T ss_pred             cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE
Confidence            655443333322   23444455544444                        3 3444455566666666666665555


Q ss_pred             ccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcccc---------CccEEEeccCCCcc-cCccCCCCC
Q 036772          221 VSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ---------NLVDMSLVDCGITE-LPESLGRSP  290 (583)
Q Consensus       221 lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~---------~L~~L~L~~~~l~~-lp~~l~~l~  290 (583)
                      +|..+..++.|+.|++++|...+.+|..+..+++|+.|++++|.+..         .|+.|++++|.+.+ +|..+..++
T Consensus       420 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~  499 (968)
T PLN00113        420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLS  499 (968)
T ss_pred             CChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhh
Confidence            66666666666677776666666666666667777777777766542         27778888887775 667777888


Q ss_pred             CCCEEEccCCCCc-ccChhhhccCcccccccccccccccCCC----CCCCCeeeeeCCc-------CcccccCccccccc
Q 036772          291 SLKFLNLAENDFE-KIPSSIKQLSNLLFLTLQNCKRLQSLPE----LPCGSNIFARYCT-------SLETLSNLSTLFTR  358 (583)
Q Consensus       291 ~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~----lp~~~~l~~~~c~-------sL~~l~~l~~l~~~  358 (583)
                      +|+.|+|++|.+. .+|..+..+++|+.|+|++|.-...+|.    ++....+...++.       .+..++.|+.+.+.
T Consensus       500 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls  579 (968)
T PLN00113        500 ELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS  579 (968)
T ss_pred             ccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence            8888888888876 6777788888888888888755444442    2222244443332       34445566667666


Q ss_pred             ccccc
Q 036772          359 SSELW  363 (583)
Q Consensus       359 ~~~~~  363 (583)
                      .|.+.
T Consensus       580 ~N~l~  584 (968)
T PLN00113        580 HNHLH  584 (968)
T ss_pred             CCcce
Confidence            66554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.92  E-value=7e-26  Score=230.89  Aligned_cols=304  Identities=22%  Similarity=0.234  Sum_probs=233.3

Q ss_pred             cceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCC-CCCCceEEEccCCChhhhc-ccccCCCCccE
Q 036772           18 LRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLW-NGVQNLAALKR   95 (583)
Q Consensus        18 Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~   95 (583)
                      -+.|++++|.     ....-+.++..+| +|+.+++..|.++.+|... ...+|+.|+|.+|.|..+- +.++.++.|++
T Consensus        80 t~~LdlsnNk-----l~~id~~~f~nl~-nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrs  153 (873)
T KOG4194|consen   80 TQTLDLSNNK-----LSHIDFEFFYNLP-NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRS  153 (873)
T ss_pred             eeeeeccccc-----cccCcHHHHhcCC-cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhh
Confidence            4669999885     2223345667775 9999999999999999877 4556999999999998775 34889999999


Q ss_pred             EeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCC
Q 036772           96 LNLSYCKQLSRIP--DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGC  171 (583)
Q Consensus        96 L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c  171 (583)
                      ||||.|. +..+|  .|..-.++++|+|++|.+...--..|..+.+|..|.|+. +.++.+|...  .++.|+.|+|..|
T Consensus       154 lDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  154 LDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRN  231 (873)
T ss_pred             hhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhcccc
Confidence            9999995 44444  577778999999999876665556788899999999988 6788888765  5999999999875


Q ss_pred             CCc-c--cccccCCCcCEEeccCCCCcccccc-ccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcccc
Q 036772          172 SNL-K--RFLEISCNIENLDLSETAIEELPSS-IGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPE  247 (583)
Q Consensus       172 ~~l-~--~~~~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~  247 (583)
                      ..- .  .-...+.+|+.|.+..|.|..+... +-.+.++++|+|+.|.....-..++.+++.|+.|+++.|..-..-++
T Consensus       232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d  311 (873)
T KOG4194|consen  232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID  311 (873)
T ss_pred             ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence            421 1  1235567888888888888887654 67788889999988877666667888888999999988877777778


Q ss_pred             ccCCCCcccEEEccCCccccC----------ccEEEeccCCCcccC-ccCCCCCCCCEEEccCCCCc----ccChhhhcc
Q 036772          248 EIGNLESLKIMLANETAISQN----------LVDMSLVDCGITELP-ESLGRSPSLKFLNLAENDFE----KIPSSIKQL  312 (583)
Q Consensus       248 ~l~~l~~L~~L~l~~~~i~~~----------L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~----~lp~~i~~l  312 (583)
                      .+...++|+.|+++.|+|...          |++|.|++|.+..+- ..+..+++|++|||+.|.+.    +-...+..+
T Consensus       312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl  391 (873)
T KOG4194|consen  312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL  391 (873)
T ss_pred             hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence            888888888888888888764          777888888777755 35667777777887777755    222334557


Q ss_pred             CcccccccccccccccCC
Q 036772          313 SNLLFLTLQNCKRLQSLP  330 (583)
Q Consensus       313 ~~L~~L~L~~c~~L~~lp  330 (583)
                      ++|+.|.+.++ ++++||
T Consensus       392 ~~LrkL~l~gN-qlk~I~  408 (873)
T KOG4194|consen  392 PSLRKLRLTGN-QLKSIP  408 (873)
T ss_pred             hhhhheeecCc-eeeecc
Confidence            77777777776 566666

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.90  E-value=1.4e-26  Score=237.11  Aligned_cols=303  Identities=25%  Similarity=0.343  Sum_probs=134.0

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCC-CCCCceEEEccCCChh--hhcccccCC
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKN-IPEHLVSLEMPHSNIE--QLWNGVQNL   90 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~--~l~~~~~~l   90 (583)
                      .|.+++-|++...      ....+|+.+..+ .+|++|.+++|.+.++-... .++.|+.++++.|+++  .+|..+-++
T Consensus        30 qMt~~~WLkLnrt------~L~~vPeEL~~l-qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l  102 (1255)
T KOG0444|consen   30 QMTQMTWLKLNRT------KLEQVPEELSRL-QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRL  102 (1255)
T ss_pred             HhhheeEEEechh------hhhhChHHHHHH-hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhccc
Confidence            4444444544332      233444444444 34444444444444433322 3444444444444444  244444444


Q ss_pred             CCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhh-ccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEE
Q 036772           91 AALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSS-IQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLY  167 (583)
Q Consensus        91 ~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~-i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~  167 (583)
                      ..|.+||||+|+ +.+.| .+..+.++-.|+|++|+ +..+|.+ +-+++.|-+|||++ +++..+|+.+ .+..|++|+
T Consensus       103 ~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~  179 (1255)
T KOG0444|consen  103 KDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLK  179 (1255)
T ss_pred             ccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhh
Confidence            444555555443 22333 34444444445554432 3333322 23444444555544 3444444444 444555555


Q ss_pred             ecCCCC----cccccccCCCcCEEeccCCCCc--cccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCC
Q 036772          168 LGGCSN----LKRFLEISCNIENLDLSETAIE--ELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLK  241 (583)
Q Consensus       168 L~~c~~----l~~~~~~~~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~  241 (583)
                      |++|+.    ++++| .++.|+.|.+++++-+  .+|.++..+.+|..++++.| .+..+|..+.++++|+.|++++|. 
T Consensus       180 Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~-  256 (1255)
T KOG0444|consen  180 LSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNK-  256 (1255)
T ss_pred             cCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCc-
Confidence            554432    12222 1233444444444322  44444555555555555442 233444445555555555555432 


Q ss_pred             CCccccccCCCCcccEEEccCCccccC---------ccEEEeccCCCc--ccCccCCCCCCCCEEEccCCCCcccChhhh
Q 036772          242 LEKLPEEIGNLESLKIMLANETAISQN---------LVDMSLVDCGIT--ELPESLGRSPSLKFLNLAENDFEKIPSSIK  310 (583)
Q Consensus       242 l~~lp~~l~~l~~L~~L~l~~~~i~~~---------L~~L~L~~~~l~--~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~  310 (583)
                      ++.+....+...+|++|+++.|++...         |+.|.+.+|+++  ++|..++.+..|+.+..++|.++-+|.++.
T Consensus       257 iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglc  336 (1255)
T KOG0444|consen  257 ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLC  336 (1255)
T ss_pred             eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhh
Confidence            222222333344444444444444332         444444444332  255555555555555555555555555555


Q ss_pred             ccCcccccccccccccccCC
Q 036772          311 QLSNLLFLTLQNCKRLQSLP  330 (583)
Q Consensus       311 ~l~~L~~L~L~~c~~L~~lp  330 (583)
                      .|.+|+.|.|+.+ +|-.+|
T Consensus       337 RC~kL~kL~L~~N-rLiTLP  355 (1255)
T KOG0444|consen  337 RCVKLQKLKLDHN-RLITLP  355 (1255)
T ss_pred             hhHHHHHhccccc-ceeech
Confidence            5555555555443 344444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.90  E-value=2e-26  Score=236.07  Aligned_cols=303  Identities=25%  Similarity=0.339  Sum_probs=178.0

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCC--CCCCC-CCCCCceEEEccCCChhhhcccccCC
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLK--SLPSK-NIPEHLVSLEMPHSNIEQLWNGVQNL   90 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~--~lp~~-~~~~~L~~L~L~~~~l~~l~~~~~~l   90 (583)
                      .+.+|..|.+++|      ....+-+.+..+| .||.+.+..|.++  .+|.. |.++.|..|||++|+++..|.++...
T Consensus        53 ~lqkLEHLs~~HN------~L~~vhGELs~Lp-~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~A  125 (1255)
T KOG0444|consen   53 RLQKLEHLSMAHN------QLISVHGELSDLP-RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYA  125 (1255)
T ss_pred             HHhhhhhhhhhhh------hhHhhhhhhccch-hhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhh
Confidence            5556666666665      3344455555553 5666666666553  34544 36666666666666666666666666


Q ss_pred             CCccEEeccCCCCCCCCCC--CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCC----CCcCCCcCCCCCcc
Q 036772           91 AALKRLNLSYCKQLSRIPD--LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCIS----LKSLPTGINLDSLK  164 (583)
Q Consensus        91 ~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~----l~~lp~~~~l~~L~  164 (583)
                      .++-+|+||+|.+ ..+|.  +..++.|-.|+|++| .+..+|+.+..+..|++|+|+++..    ++.+|   .+++|+
T Consensus       126 Kn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP---smtsL~  200 (1255)
T KOG0444|consen  126 KNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP---SMTSLS  200 (1255)
T ss_pred             cCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCc---cchhhh
Confidence            6666666666643 33332  455556666666653 3455566666666666666665432    22233   245555


Q ss_pred             EEEecCCCC-cccccc---cCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCC
Q 036772          165 VLYLGGCSN-LKRFLE---ISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCL  240 (583)
Q Consensus       165 ~L~L~~c~~-l~~~~~---~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~  240 (583)
                      +|.+++... +..+|.   .+.+|+.++++.|.+..+|..+-++++|+.|+|++|+. +.+.-......+|++|+++.| 
T Consensus       201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i-teL~~~~~~W~~lEtLNlSrN-  278 (1255)
T KOG0444|consen  201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI-TELNMTEGEWENLETLNLSRN-  278 (1255)
T ss_pred             hhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce-eeeeccHHHHhhhhhhccccc-
Confidence            555555321 222332   22345555555555555555555555555555555433 223333334445555555552 


Q ss_pred             CCCccccccCCCCcccEEEccCCccccC-----------ccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhh
Q 036772          241 KLEKLPEEIGNLESLKIMLANETAISQN-----------LVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSI  309 (583)
Q Consensus       241 ~l~~lp~~l~~l~~L~~L~l~~~~i~~~-----------L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i  309 (583)
                      .+..+|+.+..++.|+.|.+.+|.+.-.           |+.+...+|.+.-+|+.+..|..|+.|.|+.|++.++|..|
T Consensus       279 QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaI  358 (1255)
T KOG0444|consen  279 QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAI  358 (1255)
T ss_pred             hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhh
Confidence            3444555555555555555555443321           45555566666668999999999999999999999999999


Q ss_pred             hccCcccccccccccccccCC
Q 036772          310 KQLSNLLFLTLQNCKRLQSLP  330 (583)
Q Consensus       310 ~~l~~L~~L~L~~c~~L~~lp  330 (583)
                      .-|+.|+.|++..+++|.--|
T Consensus       359 HlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  359 HLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hhcCCcceeeccCCcCccCCC
Confidence            999999999999998876544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.90  E-value=2.5e-24  Score=219.71  Aligned_cols=303  Identities=20%  Similarity=0.167  Sum_probs=234.9

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCC--CCCCceEEEccCCChhhhccc-ccCC
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKN--IPEHLVSLEMPHSNIEQLWNG-VQNL   90 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~l~~l~~~-~~~l   90 (583)
                      ++.+|+.+.+.+|      ....+|..-... .+|+.|++.+|.+.++.+.-  .++.|+.|||+.|.|..++.. +..-
T Consensus       100 nl~nLq~v~l~~N------~Lt~IP~f~~~s-ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~  172 (873)
T KOG4194|consen  100 NLPNLQEVNLNKN------ELTRIPRFGHES-GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAK  172 (873)
T ss_pred             cCCcceeeeeccc------hhhhcccccccc-cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCC
Confidence            8899999999887      566777666555 58999999999988887653  577899999999999988765 6667


Q ss_pred             CCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCC-cC-CCCCccEEE
Q 036772           91 AALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPT-GI-NLDSLKVLY  167 (583)
Q Consensus        91 ~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L~  167 (583)
                      .++++|+|++|++.+.-. .|..+.+|..|.|+.|....--+.+|.+|++|+.|+|.. +.++.+-. .+ ++++|+.|.
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlk  251 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLK  251 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhh
Confidence            889999999997665444 488888999999998765444445778899999999987 55655532 23 788999998


Q ss_pred             ecCCCCcc---cccccCCCcCEEeccCCCCccccc-cccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCC
Q 036772          168 LGGCSNLK---RFLEISCNIENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLE  243 (583)
Q Consensus       168 L~~c~~l~---~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~  243 (583)
                      |..|...+   ...-.+.+|++|+|..|++..+.. ++-+++.|+.|++++|.+...-+++....++|+.|+++.|....
T Consensus       252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~  331 (873)
T KOG4194|consen  252 LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR  331 (873)
T ss_pred             hhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence            88754221   122345688889999988887754 46778889999999888877777788888899999999877666


Q ss_pred             ccccccCCCCcccEEEccCCccccC----------ccEEEeccCCCcc-c---CccCCCCCCCCEEEccCCCCcccCh-h
Q 036772          244 KLPEEIGNLESLKIMLANETAISQN----------LVDMSLVDCGITE-L---PESLGRSPSLKFLNLAENDFEKIPS-S  308 (583)
Q Consensus       244 ~lp~~l~~l~~L~~L~l~~~~i~~~----------L~~L~L~~~~l~~-l---p~~l~~l~~L~~L~Ls~n~l~~lp~-~  308 (583)
                      --+..+..+..|+.|.+++|.+...          |+.|+|++|.+.. +   ...+..+++|+.|++.||+++.+|. .
T Consensus       332 l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krA  411 (873)
T KOG4194|consen  332 LDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRA  411 (873)
T ss_pred             CChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhh
Confidence            6666778888888899998887643          8888888887765 2   2345678999999999999998884 4


Q ss_pred             hhccCccccccccccc
Q 036772          309 IKQLSNLLFLTLQNCK  324 (583)
Q Consensus       309 i~~l~~L~~L~L~~c~  324 (583)
                      +..++.|+.|+|.++.
T Consensus       412 fsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  412 FSGLEALEHLDLGDNA  427 (873)
T ss_pred             hccCcccceecCCCCc
Confidence            7788999999998873

>PLN03210 Resistant to P

Probab=99.89  E-value=3.8e-21  Score=227.19  Aligned_cols=323  Identities=21%  Similarity=0.288  Sum_probs=244.7

Q ss_pred             CcccccCCCccEEEecCCCC-------CCCCCCC--CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCC
Q 036772           39 RCLESFFNELRYFQWDGYPL-------KSLPSKN--IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPD  109 (583)
Q Consensus        39 ~~l~~l~~~Lr~L~l~~~~l-------~~lp~~~--~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~  109 (583)
                      ..+..+ ++|++|.+..+..       ..+|..+  .+.+|+.|++.++.++.+|..+ ...+|+.|++++|+.......
T Consensus       552 ~aF~~m-~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~  629 (1153)
T PLN03210        552 NAFKGM-RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDG  629 (1153)
T ss_pred             HHHhcC-ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccc
Confidence            356666 6899999976532       2466655  4567999999999999999887 579999999999964443335


Q ss_pred             CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCccccccc--CCCcCE
Q 036772          110 LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEI--SCNIEN  186 (583)
Q Consensus       110 l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~~--~~~L~~  186 (583)
                      +..+++|+.|+|++|..+..+|. +..+++|+.|+|++|..+..+|..+ .+++|+.|++++|..++.+|..  +.+|+.
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~  708 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYR  708 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCE
Confidence            88899999999999988888874 8889999999999999999999988 8999999999999999999874  568999


Q ss_pred             EeccCCC-CccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCC------cc-ccccCCCCcccEE
Q 036772          187 LDLSETA-IEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLE------KL-PEEIGNLESLKIM  258 (583)
Q Consensus       187 L~L~~~~-i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~------~l-p~~l~~l~~L~~L  258 (583)
                      |+++++. ++.+|.   ...+|+.|+++++. ...+|..+ .+++|++|.+.++....      .+ +......++|+.|
T Consensus       709 L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L  783 (1153)
T PLN03210        709 LNLSGCSRLKSFPD---ISTNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL  783 (1153)
T ss_pred             EeCCCCCCcccccc---ccCCcCeeecCCCc-cccccccc-cccccccccccccchhhccccccccchhhhhccccchhe
Confidence            9999874 445554   24689999999876 45677655 58889999888754211      11 1122234689999


Q ss_pred             EccCCcccc----------CccEEEeccCC-CcccCccCCCCCCCCEEEccCCC-CcccChhhhccCccccccccccccc
Q 036772          259 LANETAISQ----------NLVDMSLVDCG-ITELPESLGRSPSLKFLNLAEND-FEKIPSSIKQLSNLLFLTLQNCKRL  326 (583)
Q Consensus       259 ~l~~~~i~~----------~L~~L~L~~~~-l~~lp~~l~~l~~L~~L~Ls~n~-l~~lp~~i~~l~~L~~L~L~~c~~L  326 (583)
                      ++++|....          .|+.|++++|. +..+|..+ .+++|+.|++++|. +..+|..   .++|+.|+++++ .+
T Consensus       784 ~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n-~i  858 (1153)
T PLN03210        784 FLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT-GI  858 (1153)
T ss_pred             eCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC-CC
Confidence            999875322          28999999985 56688766 78999999999986 5566643   368999999886 56


Q ss_pred             ccCCC----CCCCCeeeeeCCcCcccccCcccccccccccceeeeecccccCCccc
Q 036772          327 QSLPE----LPCGSNIFARYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKLNRNE  378 (583)
Q Consensus       327 ~~lp~----lp~~~~l~~~~c~sL~~l~~l~~l~~~~~~~~~~l~~~~C~~L~~~~  378 (583)
                      +.+|.    ++....+...+|..|+.++...    ..-..+..+++.+|.+|....
T Consensus       859 ~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~----~~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        859 EEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI----SKLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             ccChHHHhcCCCCCEEECCCCCCcCccCccc----ccccCCCeeecCCCccccccc
Confidence            66662    3333378888898888775421    111234567889999886543

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.89  E-value=1.8e-26  Score=225.91  Aligned_cols=349  Identities=25%  Similarity=0.345  Sum_probs=202.3

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCC-CCCCceEEEccCCChhhhcccccCCCC
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAA   92 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~   92 (583)
                      ++..|.+|.+++|      ...++|..+..+ ..++.|+.+.+++..+|... ....|+.|+.++|.+..+++++..+-.
T Consensus        66 nL~~l~vl~~~~n------~l~~lp~aig~l-~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~  138 (565)
T KOG0472|consen   66 NLACLTVLNVHDN------KLSQLPAAIGEL-EALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLD  138 (565)
T ss_pred             cccceeEEEeccc------hhhhCCHHHHHH-HHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhh
Confidence            4445555555554      344455555444 34555555555555554433 444455555555555555555555555


Q ss_pred             ccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCC
Q 036772           93 LKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGC  171 (583)
Q Consensus        93 L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c  171 (583)
                      |..++..+|...+-.+++..+.+|..|++.++. +..+|+..-.++.|++||... +.++.+|..+ .+.+|+-|++.. 
T Consensus       139 l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~-  215 (565)
T KOG0472|consen  139 LEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRR-  215 (565)
T ss_pred             hhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhh-
Confidence            555555544444433344444455555555533 223333222255666666544 4556666666 566666666665 


Q ss_pred             CCcccccccCC--CcCEEeccCCCCcccccccc-CCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccc
Q 036772          172 SNLKRFLEISC--NIENLDLSETAIEELPSSIG-NLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEE  248 (583)
Q Consensus       172 ~~l~~~~~~~~--~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~  248 (583)
                      +++..+|+..+  .|++|+++.|.|+-+|..+. +++++..||+.+|+ +++.|..++.+++|++||+++| .+..+|..
T Consensus       216 Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN-~is~Lp~s  293 (565)
T KOG0472|consen  216 NKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNN-DISSLPYS  293 (565)
T ss_pred             cccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCC-ccccCCcc
Confidence            34445554332  45666666666666666544 67777777777754 4667777777777777777764 45667777


Q ss_pred             cCCCCcccEEEccCCccccC------------------------------------------------------------
Q 036772          249 IGNLESLKIMLANETAISQN------------------------------------------------------------  268 (583)
Q Consensus       249 l~~l~~L~~L~l~~~~i~~~------------------------------------------------------------  268 (583)
                      ++++ +|+.|.+.||.+...                                                            
T Consensus       294 Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~  372 (565)
T KOG0472|consen  294 LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK  372 (565)
T ss_pred             cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc
Confidence            7777 777777777765321                                                            


Q ss_pred             -----------------ccEEEeccCC------------------------CcccCccCCCCCCCCEEEccCCCCcccCh
Q 036772          269 -----------------LVDMSLVDCG------------------------ITELPESLGRSPSLKFLNLAENDFEKIPS  307 (583)
Q Consensus       269 -----------------L~~L~L~~~~------------------------l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~  307 (583)
                                       ....+++.|+                        +.-+|..+..+++|..|+|++|-+.++|.
T Consensus       373 qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~  452 (565)
T KOG0472|consen  373 QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPE  452 (565)
T ss_pred             ccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcch
Confidence                             2333344333                        33344555677888888888888888888


Q ss_pred             hhhccCcccccccccccccccCCCCC----------CC-CeeeeeCCcCcccccCccccccccccccee-eeecccccCC
Q 036772          308 SIKQLSNLLFLTLQNCKRLQSLPELP----------CG-SNIFARYCTSLETLSNLSTLFTRSSELWQA-FDFCNCFKLN  375 (583)
Q Consensus       308 ~i~~l~~L~~L~L~~c~~L~~lp~lp----------~~-~~l~~~~c~sL~~l~~l~~l~~~~~~~~~~-l~~~~C~~L~  375 (583)
                      ..+.+..|+.|+++.+ +.+.+|+.-          .+ ..+...+-..+..+.+|..+++..|.+... -.+.||.+|.
T Consensus       453 e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~  531 (565)
T KOG0472|consen  453 EMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLR  531 (565)
T ss_pred             hhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhcccccee
Confidence            8888888888888887 555555321          11 122222334477778888888877776432 1245666654


Q ss_pred             c
Q 036772          376 R  376 (583)
Q Consensus       376 ~  376 (583)
                      .
T Consensus       532 h  532 (565)
T KOG0472|consen  532 H  532 (565)
T ss_pred             E
Confidence            3

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.87  E-value=5e-25  Score=215.88  Aligned_cols=285  Identities=25%  Similarity=0.309  Sum_probs=170.1

Q ss_pred             ceecCCcccccCCCccEEEecCCCCCCCCCCC-CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCC
Q 036772           34 KVRHSRCLESFFNELRYFQWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSL  112 (583)
Q Consensus        34 ~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~  112 (583)
                      ...+|+++..+. +|..|++.++.++++|+.. .++.|++||...|.++.+|+.++.+.+|.-|+|..|+ +..+|.|.+
T Consensus       149 i~slp~~~~~~~-~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk-i~~lPef~g  226 (565)
T KOG0472|consen  149 ISSLPEDMVNLS-KLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK-IRFLPEFPG  226 (565)
T ss_pred             cccCchHHHHHH-HHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc-cccCCCCCc
Confidence            344555555552 5555556666666555543 5566666666666666666666666666666666664 444556666


Q ss_pred             CCCcCEEeeeCCCCchhhhhhc-cCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCcccccccCCC--cCEEe
Q 036772          113 ALNLEWLDLVGCASLIEIHSSI-QHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEISCN--IENLD  188 (583)
Q Consensus       113 l~~L~~L~L~~~~~l~~~~~~i-~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~~~~~--L~~L~  188 (583)
                      +..|.+|.+..| .+..+|... .++.+|..|||++ ++++++|.++ .+++|+.||++++ .+..+|..+++  |+.|.
T Consensus       227 cs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnlhL~~L~  303 (565)
T KOG0472|consen  227 CSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNLHLKFLA  303 (565)
T ss_pred             cHHHHHHHhccc-HHHhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccCC-ccccCCcccccceeeehh
Confidence            665555555553 234455444 3777888888877 6777888777 6777778877763 33333333332  22233


Q ss_pred             ccCCCC--------------------------------------------------------------------------
Q 036772          189 LSETAI--------------------------------------------------------------------------  194 (583)
Q Consensus       189 L~~~~i--------------------------------------------------------------------------  194 (583)
                      +.||.+                                                                          
T Consensus       304 leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfe  383 (565)
T KOG0472|consen  304 LEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFE  383 (565)
T ss_pred             hcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHH
Confidence            333333                                                                          


Q ss_pred             -----------------ccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccE
Q 036772          195 -----------------EELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKI  257 (583)
Q Consensus       195 -----------------~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~  257 (583)
                                       .++|..+..++.+.+.-+.+++...-+|..++.++.|..|++++ +.+..+|..++.+..|+.
T Consensus       384 a~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~  462 (565)
T KOG0472|consen  384 AAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQT  462 (565)
T ss_pred             HhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhhe
Confidence                             22222222222222222222233333455566677777777775 456677777777777777


Q ss_pred             EEccCCccccC---------ccEEEeccCCCcccCcc-CCCCCCCCEEEccCCCCcccChhhhccCccccccccccc
Q 036772          258 MLANETAISQN---------LVDMSLVDCGITELPES-LGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCK  324 (583)
Q Consensus       258 L~l~~~~i~~~---------L~~L~L~~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~  324 (583)
                      |+++.|.+...         ++.+..+++++..++.. +..+.+|..|||.+|.+..+|+.++++.+|+.|++++++
T Consensus       463 LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  463 LNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             ecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc
Confidence            77777766543         55555566777776644 777777777777777777777777777777777777763

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.83  E-value=1.6e-22  Score=216.70  Aligned_cols=334  Identities=21%  Similarity=0.215  Sum_probs=236.2

Q ss_pred             CCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCC-CCCCceEEEccCCChhhhcccccCCCCcc
Q 036772           16 RRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAALK   94 (583)
Q Consensus        16 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~   94 (583)
                      -+|+.|++++|      ....+|..+..++ +|+.|+++.|-+.++|... .+.+|++|.|.+|.+..+|.++..+.+|+
T Consensus        45 v~L~~l~lsnn------~~~~fp~~it~l~-~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~  117 (1081)
T KOG0618|consen   45 VKLKSLDLSNN------QISSFPIQITLLS-HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQ  117 (1081)
T ss_pred             eeeEEeecccc------ccccCCchhhhHH-HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccc
Confidence            34999999998      6788999999885 9999999999999999776 89999999999999999999999999999


Q ss_pred             EEeccCCCCCCCCCCCCCCCCcCEEeee-------------------CCCCchhhhhhccCCCCCCEEEccCCCCC----
Q 036772           95 RLNLSYCKQLSRIPDLSLALNLEWLDLV-------------------GCASLIEIHSSIQHLNKLVFLNLGRCISL----  151 (583)
Q Consensus        95 ~L~Ls~~~~l~~~p~l~~l~~L~~L~L~-------------------~~~~l~~~~~~i~~l~~L~~L~L~~c~~l----  151 (583)
                      .|++++|.+....+-+..++.++.+..+                   .+.....++..+..++.  .|+|+++...    
T Consensus       118 ~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dl  195 (1081)
T KOG0618|consen  118 YLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDL  195 (1081)
T ss_pred             ccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhh
Confidence            9999999765543334444444444444                   44433444444444444  4666664322    


Q ss_pred             ------CcCCC------c--CCCCCccEEEecCCCCccccccc-CCCcCEEeccCCCCccccccccCCCCccEEeeeCCC
Q 036772          152 ------KSLPT------G--INLDSLKVLYLGGCSNLKRFLEI-SCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCS  216 (583)
Q Consensus       152 ------~~lp~------~--~~l~~L~~L~L~~c~~l~~~~~~-~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~  216 (583)
                            +.+--      .  +..++|+.|+...|......+.. ..+|+.++++.+.++.+|++++.+.+|+.++..+|.
T Consensus       196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~  275 (1081)
T KOG0618|consen  196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNR  275 (1081)
T ss_pred             hhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchh
Confidence                  11100      0  02345566666665555433333 347889999999999999989999999999998876


Q ss_pred             CCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccC----------------------------
Q 036772          217 RLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQN----------------------------  268 (583)
Q Consensus       217 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~----------------------------  268 (583)
                      . ..+|..+....+|+.|.+..| .++.+|+....+++|+.|++..|.+...                            
T Consensus       276 l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~  353 (1081)
T KOG0618|consen  276 L-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSY  353 (1081)
T ss_pred             H-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccc
Confidence            5 556666666666666666553 3555566666666666666666555432                            


Q ss_pred             -------------------------------ccEEEeccCCCcccCc-cCCCCCCCCEEEccCCCCcccChhhhccCccc
Q 036772          269 -------------------------------LVDMSLVDCGITELPE-SLGRSPSLKFLNLAENDFEKIPSSIKQLSNLL  316 (583)
Q Consensus       269 -------------------------------L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~  316 (583)
                                                     |+.|+|++|++..+|. .+.+++.|++|+|+||+++.||..+..+..|+
T Consensus       354 ~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~  433 (1081)
T KOG0618|consen  354 EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLH  433 (1081)
T ss_pred             cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhH
Confidence                                           8899999999998884 57788999999999999999999999999999


Q ss_pred             ccccccccccccCCCCCCCC--eeeeeCCcCcccc--------cCcccccccccc
Q 036772          317 FLTLQNCKRLQSLPELPCGS--NIFARYCTSLETL--------SNLSTLFTRSSE  361 (583)
Q Consensus       317 ~L~L~~c~~L~~lp~lp~~~--~l~~~~c~sL~~l--------~~l~~l~~~~~~  361 (583)
                      .|...++ ++..+|++..+-  ......|..|+.+        ++|+.+++.+|.
T Consensus       434 tL~ahsN-~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  434 TLRAHSN-QLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             HHhhcCC-ceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            9988776 677777654332  2233355555543        345666665554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.79  E-value=1.8e-18  Score=191.20  Aligned_cols=250  Identities=21%  Similarity=0.241  Sum_probs=162.4

Q ss_pred             CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCC
Q 036772           46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCA  125 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~  125 (583)
                      +.-..|+++++.++++|..+. .+|+.|++.+|+++.+|..   +++|++|+|++|+ ++.+|.+  .++|+.|++.+|.
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l--p~sL~~L~Ls~N~  273 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL--PPGLLELSIFSNP  273 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc--ccccceeeccCCc
Confidence            345567777777777776543 4677777777777777652   4677777777774 3345532  3567777777764


Q ss_pred             CchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCC
Q 036772          126 SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLS  205 (583)
Q Consensus       126 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~  205 (583)
                       +..+|..   ..+|+.|++++ +.++.+|.  .+++|+.|++++| .+..+|..+.+|+.|++++|.++.+|..   ..
T Consensus       274 -L~~Lp~l---p~~L~~L~Ls~-N~Lt~LP~--~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~  342 (788)
T PRK15387        274 -LTHLPAL---PSGLCKLWIFG-NQLTSLPV--LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTL---PS  342 (788)
T ss_pred             -hhhhhhc---hhhcCEEECcC-Cccccccc--cccccceeECCCC-ccccCCCCcccccccccccCcccccccc---cc
Confidence             3444442   24566777766 35666665  2466777777775 5555666666677777777777766641   24


Q ss_pred             CccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcccc------CccEEEeccCCC
Q 036772          206 RLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ------NLVDMSLVDCGI  279 (583)
Q Consensus       206 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~------~L~~L~L~~~~l  279 (583)
                      +|+.|++++|... .+|..   ..+|+.|++++|. +..+|..   ..+|+.|++++|.+..      .|+.|++++|.+
T Consensus       343 ~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~L  414 (788)
T PRK15387        343 GLQELSVSDNQLA-SLPTL---PSELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRL  414 (788)
T ss_pred             ccceEecCCCccC-CCCCC---Ccccceehhhccc-cccCccc---ccccceEEecCCcccCCCCcccCCCEEEccCCcC
Confidence            6777777775443 44542   2356666666643 3445543   2456677777766553      277788888888


Q ss_pred             cccCccCCCCCCCCEEEccCCCCcccChhhhccCccccccccccc
Q 036772          280 TELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCK  324 (583)
Q Consensus       280 ~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~  324 (583)
                      +.+|..   ..+|+.|++++|.++.+|..+..+++|+.|+|++|+
T Consensus       415 ssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        415 TSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             CCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence            877753   346788888888888888888888888888888874

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.77  E-value=4.8e-18  Score=187.87  Aligned_cols=258  Identities=23%  Similarity=0.258  Sum_probs=192.9

Q ss_pred             CCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccE
Q 036772           16 RRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKR   95 (583)
Q Consensus        16 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~   95 (583)
                      .+-..|+++++.      ...+|..+   +.+|+.|.+.+|.++.+|.  .+++|++|++++|+++.+|..   .++|+.
T Consensus       201 ~~~~~LdLs~~~------LtsLP~~l---~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l---p~sL~~  266 (788)
T PRK15387        201 NGNAVLNVGESG------LTTLPDCL---PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL---PPGLLE  266 (788)
T ss_pred             CCCcEEEcCCCC------CCcCCcch---hcCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc---ccccce
Confidence            345677887764      23566654   3579999999999999886  367899999999999988753   468889


Q ss_pred             EeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcc
Q 036772           96 LNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLK  175 (583)
Q Consensus        96 L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~  175 (583)
                      |++++|. +..+|.+  ..+|+.|++++|. +..+|.   .+++|+.|++++| .++.+|..  ..+|+.|++++| .+.
T Consensus       267 L~Ls~N~-L~~Lp~l--p~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~l--p~~L~~L~Ls~N-~L~  335 (788)
T PRK15387        267 LSIFSNP-LTHLPAL--PSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDN-QLASLPAL--PSELCKLWAYNN-QLT  335 (788)
T ss_pred             eeccCCc-hhhhhhc--hhhcCEEECcCCc-cccccc---cccccceeECCCC-ccccCCCC--cccccccccccC-ccc
Confidence            9999885 4455542  3578889998875 445554   3468999999884 67777652  346788888874 556


Q ss_pred             cccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcc
Q 036772          176 RFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESL  255 (583)
Q Consensus       176 ~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L  255 (583)
                      .+|....+|+.|++++|.++.+|..   .++|+.|++++|.. ..+|..   ..+|+.|++++|. +..+|..   .++|
T Consensus       336 ~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L-~~LP~l---~~~L~~LdLs~N~-Lt~LP~l---~s~L  404 (788)
T PRK15387        336 SLPTLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRL-TSLPAL---PSGLKELIVSGNR-LTSLPVL---PSEL  404 (788)
T ss_pred             cccccccccceEecCCCccCCCCCC---Ccccceehhhcccc-ccCccc---ccccceEEecCCc-ccCCCCc---ccCC
Confidence            6777677899999999999988863   35778888888654 456653   3568899998875 4456653   3578


Q ss_pred             cEEEccCCcccc------CccEEEeccCCCcccCccCCCCCCCCEEEccCCCCc-ccChhh
Q 036772          256 KIMLANETAISQ------NLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFE-KIPSSI  309 (583)
Q Consensus       256 ~~L~l~~~~i~~------~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i  309 (583)
                      +.|++++|.+..      .|+.|++++|+++.+|..+..+++|+.|+|++|.++ ..|..+
T Consensus       405 ~~LdLS~N~LssIP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        405 KELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             CEEEccCCcCCCCCcchhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            888999988765      278899999999999999999999999999999988 334333

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.70  E-value=6e-17  Score=180.21  Aligned_cols=245  Identities=20%  Similarity=0.306  Sum_probs=156.9

Q ss_pred             cCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeC
Q 036772           44 FFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVG  123 (583)
Q Consensus        44 l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~  123 (583)
                      +..+...|+++++.++++|..+ +++|+.|++++|+++.+|..+.  .+|+.|++++|. ++.+|. ....+|+.|+|++
T Consensus       176 l~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~-~l~~~L~~L~Ls~  250 (754)
T PRK15370        176 LKNNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPA-TLPDTIQEMELSI  250 (754)
T ss_pred             cccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCCh-hhhccccEEECcC
Confidence            3456778888888888888654 4678888888888888877653  588888888885 445553 1124788888888


Q ss_pred             CCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccC-CCcCEEeccCCCCcccccccc
Q 036772          124 CASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEIS-CNIENLDLSETAIEELPSSIG  202 (583)
Q Consensus       124 ~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~-~~L~~L~L~~~~i~~lp~~i~  202 (583)
                      |.. ..+|..+.  .+|+.|++++ +.++.+|..+ .++|+.|++++| ++..+|..+ .+|+.|++++|.++.+|..+.
T Consensus       251 N~L-~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l-~~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~  324 (754)
T PRK15370        251 NRI-TELPERLP--SALQSLDLFH-NKISCLPENL-PEELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLP  324 (754)
T ss_pred             Ccc-CcCChhHh--CCCCEEECcC-CccCcccccc-CCCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCcccc
Confidence            764 46666553  4788888875 5677777655 357888888885 455565433 467778888888887776443


Q ss_pred             CCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCccc
Q 036772          203 NLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITEL  282 (583)
Q Consensus       203 ~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~l  282 (583)
                        ++|+.|++++|.. ..+|..+.  ++|+.|++++|. +..+|..+.  ++|+.|++++|.              ++.+
T Consensus       325 --~sL~~L~Ls~N~L-t~LP~~l~--~sL~~L~Ls~N~-L~~LP~~lp--~~L~~LdLs~N~--------------Lt~L  382 (754)
T PRK15370        325 --PGLKTLEAGENAL-TSLPASLP--PELQVLDVSKNQ-ITVLPETLP--PTITTLDVSRNA--------------LTNL  382 (754)
T ss_pred             --ccceeccccCCcc-ccCChhhc--CcccEEECCCCC-CCcCChhhc--CCcCEEECCCCc--------------CCCC
Confidence              6788888888754 34665553  578888888765 345565442  344444444444              4444


Q ss_pred             CccCCCCCCCCEEEccCCCCcccChhhhc----cCcccccccccc
Q 036772          283 PESLGRSPSLKFLNLAENDFEKIPSSIKQ----LSNLLFLTLQNC  323 (583)
Q Consensus       283 p~~l~~l~~L~~L~Ls~n~l~~lp~~i~~----l~~L~~L~L~~c  323 (583)
                      |..+.  .+|+.|++++|+++.+|..+..    ++.+..|++.++
T Consensus       383 P~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~N  425 (754)
T PRK15370        383 PENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYN  425 (754)
T ss_pred             CHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCC
Confidence            44332  2455555555555555443322    244455555544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.68  E-value=6.3e-19  Score=189.43  Aligned_cols=258  Identities=27%  Similarity=0.363  Sum_probs=191.5

Q ss_pred             CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCC
Q 036772           46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGC  124 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~  124 (583)
                      .+|+.|..+.|++..+-..+.+.+|+.+++++|++..+|+.+..+.+|+.+++.+|.. ..+| .+...++|+.|.+..|
T Consensus       219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n  297 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN  297 (1081)
T ss_pred             cchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh
Confidence            4788888888988877666789999999999999999998899999999999999976 5666 5888899999999986


Q ss_pred             CCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC--C-CCCccEEEecCCCCccccccc----CCCcCEEeccCCCCcc-
Q 036772          125 ASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--N-LDSLKVLYLGGCSNLKRFLEI----SCNIENLDLSETAIEE-  196 (583)
Q Consensus       125 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~-l~~L~~L~L~~c~~l~~~~~~----~~~L~~L~L~~~~i~~-  196 (583)
                      . +..+|+..+.++.|++|+|.. +.+.++|..+  . ..+|+.|+.+. ..+...|..    ...|+.|.+.+|.+++ 
T Consensus       298 e-l~yip~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~  374 (1081)
T KOG0618|consen  298 E-LEYIPPFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTDS  374 (1081)
T ss_pred             h-hhhCCCcccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCccccc
Confidence            5 677888889999999999988 7788888855  1 23356665554 344444422    2356778888888873 


Q ss_pred             ccccccCCCCccEEeeeCCCCCcccc-ccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEec
Q 036772          197 LPSSIGNLSRLVRLDLTNCSRLKSVS-NSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLV  275 (583)
Q Consensus       197 lp~~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~  275 (583)
                      .-+.+.++++|+.|+|++|.. ..+| ..+.++..|++|+++|| .+..+|+.+.++..|++|...+|.+..        
T Consensus       375 c~p~l~~~~hLKVLhLsyNrL-~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN~l~~--------  444 (1081)
T KOG0618|consen  375 CFPVLVNFKHLKVLHLSYNRL-NSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSNQLLS--------  444 (1081)
T ss_pred             chhhhccccceeeeeeccccc-ccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCCceee--------
Confidence            333477888999999998754 4444 45678888999999984 677888888888888888777777654        


Q ss_pred             cCCCcccCccCCCCCCCCEEEccCCCCc--ccChhhhccCcccccccccccc
Q 036772          276 DCGITELPESLGRSPSLKFLNLAENDFE--KIPSSIKQLSNLLFLTLQNCKR  325 (583)
Q Consensus       276 ~~~l~~lp~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c~~  325 (583)
                            +| .+..++.|+.+|++.|+++  .+|..... ++|++|+++++.+
T Consensus       445 ------fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  445 ------FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR  488 (1081)
T ss_pred             ------ch-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence                  55 5666666666666666655  23322211 5666666666653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.67  E-value=2e-16  Score=175.98  Aligned_cols=245  Identities=21%  Similarity=0.308  Sum_probs=186.6

Q ss_pred             CCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccE
Q 036772           16 RRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKR   95 (583)
Q Consensus        16 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~   95 (583)
                      .+...|+++++.      ...+|..   +|++|+.|++++|.++++|..+. .+|++|++++|+++.+|..+.  .+|+.
T Consensus       178 ~~~~~L~L~~~~------LtsLP~~---Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~  245 (754)
T PRK15370        178 NNKTELRLKILG------LTTIPAC---IPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQE  245 (754)
T ss_pred             cCceEEEeCCCC------cCcCCcc---cccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccE
Confidence            456788887763      3355654   46789999999999999998654 589999999999999987653  58999


Q ss_pred             EeccCCCCCCCCCC-CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCc
Q 036772           96 LNLSYCKQLSRIPD-LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNL  174 (583)
Q Consensus        96 L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l  174 (583)
                      |+|++|... .+|. +.  .+|+.|++++|. +..+|..+.  ++|+.|++++| .++.+|..+ .++|+.|++++|. +
T Consensus       246 L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~l-p~sL~~L~Ls~N~-L  316 (754)
T PRK15370        246 MELSINRIT-ELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHL-PSGITHLNVQSNS-L  316 (754)
T ss_pred             EECcCCccC-cCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccc-hhhHHHHHhcCCc-c
Confidence            999999754 5663 32  589999999865 456777654  58999999985 678888654 3579999999864 5


Q ss_pred             ccccc-cCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCC
Q 036772          175 KRFLE-ISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLE  253 (583)
Q Consensus       175 ~~~~~-~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~  253 (583)
                      ..+|. ...+|+.|++++|.++.+|..+.  ++|+.|++++|.. ..+|..+.  +.|+.|++++|. +..+|+.+.  .
T Consensus       317 t~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L-~~LP~~lp--~~L~~LdLs~N~-Lt~LP~~l~--~  388 (754)
T PRK15370        317 TALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQI-TVLPETLP--PTITTLDVSRNA-LTNLPENLP--A  388 (754)
T ss_pred             ccCCccccccceeccccCCccccCChhhc--CcccEEECCCCCC-CcCChhhc--CCcCEEECCCCc-CCCCCHhHH--H
Confidence            55654 44689999999999999998664  7999999999865 45776553  689999999985 446776543  2


Q ss_pred             cccEEEccCCccccCccEEEeccCCCcccCccC----CCCCCCCEEEccCCCCc
Q 036772          254 SLKIMLANETAISQNLVDMSLVDCGITELPESL----GRSPSLKFLNLAENDFE  303 (583)
Q Consensus       254 ~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l----~~l~~L~~L~Ls~n~l~  303 (583)
                      .              |+.|++++|++..+|..+    +.++.+..|++.+|.+.
T Consensus       389 s--------------L~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        389 A--------------LQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             H--------------HHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            3              444555556666666543    45688999999999986

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.61  E-value=3.6e-17  Score=160.95  Aligned_cols=229  Identities=20%  Similarity=0.183  Sum_probs=169.0

Q ss_pred             cCCcccccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCC--CCC
Q 036772           37 HSRCLESFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIP--DLS  111 (583)
Q Consensus        37 l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p--~l~  111 (583)
                      +.+-...+|.+-..+.++.|.+++||+. | .+++|++|||++|+|+.+- ..|+.++.|..|-+.++..++++|  .|.
T Consensus        58 L~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~  137 (498)
T KOG4237|consen   58 LTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG  137 (498)
T ss_pred             cccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh
Confidence            4444556788899999999999999987 4 8999999999999999874 559999999998888866788888  388


Q ss_pred             CCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCCCc---------------
Q 036772          112 LALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNL---------------  174 (583)
Q Consensus       112 ~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l---------------  174 (583)
                      ++..|+.|.+.-|...-.....+..+++|..|.+.+ +.++.++...  .+.+++++.+..+..+               
T Consensus       138 gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~  216 (498)
T KOG4237|consen  138 GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMN  216 (498)
T ss_pred             hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhc
Confidence            999999999988776666667888899998888887 5666776633  6677777666543200               


Q ss_pred             --------------------------------ccc---------c---------ccCCCcCEEeccCCCCcccc-ccccC
Q 036772          175 --------------------------------KRF---------L---------EISCNIENLDLSETAIEELP-SSIGN  203 (583)
Q Consensus       175 --------------------------------~~~---------~---------~~~~~L~~L~L~~~~i~~lp-~~i~~  203 (583)
                                                      +.+         |         ..+++|+.|+|++|.++.+- .++..
T Consensus       217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~  296 (498)
T KOG4237|consen  217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG  296 (498)
T ss_pred             hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence                                            011         1         12346777777777777663 35667


Q ss_pred             CCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccc
Q 036772          204 LSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAIS  266 (583)
Q Consensus       204 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~  266 (583)
                      ...++.|.|..|+.-..-...+.++..|++|++++|+.....|..+..+.+|.+|.+-.|.+.
T Consensus       297 ~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  297 AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            777777777776554444456677788888888888777777777778888888877776543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.51  E-value=7.4e-15  Score=150.46  Aligned_cols=244  Identities=25%  Similarity=0.228  Sum_probs=131.4

Q ss_pred             CCCCceEEEccCCChh-----hhcccccCCCCccEEeccCCCCCC--C----CC-CCCCCCCcCEEeeeCCCCchhhhhh
Q 036772           66 IPEHLVSLEMPHSNIE-----QLWNGVQNLAALKRLNLSYCKQLS--R----IP-DLSLALNLEWLDLVGCASLIEIHSS  133 (583)
Q Consensus        66 ~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~Ls~~~~l~--~----~p-~l~~l~~L~~L~L~~~~~l~~~~~~  133 (583)
                      ...+|++|+++++.++     .++..+...++|+.++++++....  .    ++ .+..+++|++|++++|......+..
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  100 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV  100 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence            4556888888888873     455567777888888888775432  0    11 2455677778888777665444444


Q ss_pred             ccCCCC---CCEEEccCCCCCC----cCCCcC-CC-CCccEEEecCCCCcc----ccc---ccCCCcCEEeccCCCCc--
Q 036772          134 IQHLNK---LVFLNLGRCISLK----SLPTGI-NL-DSLKVLYLGGCSNLK----RFL---EISCNIENLDLSETAIE--  195 (583)
Q Consensus       134 i~~l~~---L~~L~L~~c~~l~----~lp~~~-~l-~~L~~L~L~~c~~l~----~~~---~~~~~L~~L~L~~~~i~--  195 (583)
                      +..+.+   |++|++++|....    .+...+ .+ ++|++|++++|....    .++   ....+|+.|++++|.++  
T Consensus       101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  180 (319)
T cd00116         101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA  180 (319)
T ss_pred             HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence            433333   7777777754221    111112 33 666777777665321    111   12235566666665554  


Q ss_pred             ---cccccccCCCCccEEeeeCCCCCcc----ccccccCCCCCcEEEccCCCCCCccccccC-----CCCcccEEEccCC
Q 036772          196 ---ELPSSIGNLSRLVRLDLTNCSRLKS----VSNSLCNLKSLQYLFLSGCLKLEKLPEEIG-----NLESLKIMLANET  263 (583)
Q Consensus       196 ---~lp~~i~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~-----~l~~L~~L~l~~~  263 (583)
                         .++..+..+++|+.|++++|.....    ++..+..+++|++|++++|.....-...+.     ..+.         
T Consensus       181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~---------  251 (319)
T cd00116         181 GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS---------  251 (319)
T ss_pred             HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCC---------
Confidence               1233334445566666665543211    223344455555555555543221111100     0122         


Q ss_pred             ccccCccEEEeccCCCcc-----cCccCCCCCCCCEEEccCCCCccc-----Chhhhcc-Ccccccccccc
Q 036772          264 AISQNLVDMSLVDCGITE-----LPESLGRSPSLKFLNLAENDFEKI-----PSSIKQL-SNLLFLTLQNC  323 (583)
Q Consensus       264 ~i~~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~l-----p~~i~~l-~~L~~L~L~~c  323 (583)
                           |++|++++|.+++     +...+..+++|+++++++|.+..-     ...+... +.|+.|++.++
T Consensus       252 -----L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         252 -----LLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             -----ceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence                 5555666665542     344555667888888888887733     2233334 57777777654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.48  E-value=4.6e-16  Score=136.65  Aligned_cols=48  Identities=38%  Similarity=0.641  Sum_probs=29.8

Q ss_pred             cCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccccccccCC
Q 036772          282 LPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLP  330 (583)
Q Consensus       282 lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp  330 (583)
                      +|..++.+++|+.|.+..|.+-++|..++.+.+|+.|++.++ +|+.+|
T Consensus       142 lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn-rl~vlp  189 (264)
T KOG0617|consen  142 LPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN-RLTVLP  189 (264)
T ss_pred             CChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc-eeeecC
Confidence            556666666666666666666666666666666666666665 444444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.48  E-value=2.5e-15  Score=132.08  Aligned_cols=126  Identities=28%  Similarity=0.488  Sum_probs=68.6

Q ss_pred             cCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCC
Q 036772          184 IENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANET  263 (583)
Q Consensus       184 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~  263 (583)
                      ++.|.+++|.++.+|+.++.+.+|+.|++.+| .++.+|.+++.++.|+.|+++- +.+..+|..++.++.|+.|+++.|
T Consensus        35 ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltyn  112 (264)
T KOG0617|consen   35 ITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYN  112 (264)
T ss_pred             hhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhcccc
Confidence            33344445555555555555555555555553 2344555555555555555554 234455555555555555544444


Q ss_pred             ccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772          264 AISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       264 ~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c  323 (583)
                      .+.+            ..+|..+..++.|+.|.|+.|.|+-+|..++++++|+.|.+.++
T Consensus       113 nl~e------------~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn  160 (264)
T KOG0617|consen  113 NLNE------------NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN  160 (264)
T ss_pred             cccc------------ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence            4332            12555555555666666666666666666666666666666555

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.42  E-value=3.8e-14  Score=145.15  Aligned_cols=254  Identities=23%  Similarity=0.201  Sum_probs=173.3

Q ss_pred             CCcccccCCCccEEEecCCCCC-----CCCCCC-CCCCceEEEccCCChhh-------hcccccCCCCccEEeccCCCCC
Q 036772           38 SRCLESFFNELRYFQWDGYPLK-----SLPSKN-IPEHLVSLEMPHSNIEQ-------LWNGVQNLAALKRLNLSYCKQL  104 (583)
Q Consensus        38 ~~~l~~l~~~Lr~L~l~~~~l~-----~lp~~~-~~~~L~~L~L~~~~l~~-------l~~~~~~l~~L~~L~Ls~~~~l  104 (583)
                      ..-+..+ ..|+.|+++++.++     .++... ..+.|++|+++++.+..       ++..+..+++|+.|++++|...
T Consensus        16 ~~~~~~l-~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~   94 (319)
T cd00116          16 TELLPKL-LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG   94 (319)
T ss_pred             HHHHHHH-hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence            3444455 46999999999874     344333 56779999999987662       3345778999999999999776


Q ss_pred             CCCC-CCCCC---CCcCEEeeeCCCCch----hhhhhccCC-CCCCEEEccCCCCCC----cCCCcC-CCCCccEEEecC
Q 036772          105 SRIP-DLSLA---LNLEWLDLVGCASLI----EIHSSIQHL-NKLVFLNLGRCISLK----SLPTGI-NLDSLKVLYLGG  170 (583)
Q Consensus       105 ~~~p-~l~~l---~~L~~L~L~~~~~l~----~~~~~i~~l-~~L~~L~L~~c~~l~----~lp~~~-~l~~L~~L~L~~  170 (583)
                      ...+ .+..+   ++|++|++++|....    .+...+..+ ++|+.|++++|....    .++..+ .+++|++|++++
T Consensus        95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~  174 (319)
T cd00116          95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN  174 (319)
T ss_pred             hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence            5443 23333   559999999987652    344566777 999999999976432    223333 578999999999


Q ss_pred             CCCc----cccccc---CCCcCEEeccCCCCcc-----ccccccCCCCccEEeeeCCCCCcccccccc-----CCCCCcE
Q 036772          171 CSNL----KRFLEI---SCNIENLDLSETAIEE-----LPSSIGNLSRLVRLDLTNCSRLKSVSNSLC-----NLKSLQY  233 (583)
Q Consensus       171 c~~l----~~~~~~---~~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~-----~l~~L~~  233 (583)
                      |..-    ..++..   .++|+.|++++|.++.     ++..+..+++|++|++++|.........+.     ..+.|++
T Consensus       175 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~  254 (319)
T cd00116         175 NGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT  254 (319)
T ss_pred             CCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE
Confidence            7643    123322   2599999999998863     455677889999999999876542222221     2479999


Q ss_pred             EEccCCCCC----CccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCC-CCCCEEEccCCC
Q 036772          234 LFLSGCLKL----EKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRS-PSLKFLNLAEND  301 (583)
Q Consensus       234 L~l~~c~~l----~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l-~~L~~L~Ls~n~  301 (583)
                      |++++|...    ..+...+..+++|+.+++++|.+.+.         ....+...+... +.|++|++.++.
T Consensus       255 L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         255 LSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE---------GAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             EEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH---------HHHHHHHHHhhcCCchhhcccCCCC
Confidence            999999764    23445566667888777777776531         000122333344 678888887765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.32  E-value=5.9e-14  Score=138.47  Aligned_cols=118  Identities=24%  Similarity=0.313  Sum_probs=88.1

Q ss_pred             EEecCCCCCCCCCCCCCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCCCch
Q 036772           51 FQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCASLI  128 (583)
Q Consensus        51 L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~  128 (583)
                      .+-++-+++++|.. .++.-+++.|..|+|+.+|.+ |+.+++||.||||+|.+....|+ |.++++|..|-+.++..+.
T Consensus        51 VdCr~~GL~eVP~~-LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   51 VDCRGKGLTEVPAN-LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             EEccCCCcccCccc-CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            33445557777764 355688999999999999876 89999999999999987777774 8888888888888867777


Q ss_pred             hhhh-hccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecC
Q 036772          129 EIHS-SIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGG  170 (583)
Q Consensus       129 ~~~~-~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~  170 (583)
                      .+|. .++.|..|+.|.+.- ..+..++...  .+++|..|.+.+
T Consensus       130 ~l~k~~F~gL~slqrLllNa-n~i~Cir~~al~dL~~l~lLslyD  173 (498)
T KOG4237|consen  130 DLPKGAFGGLSSLQRLLLNA-NHINCIRQDALRDLPSLSLLSLYD  173 (498)
T ss_pred             hhhhhHhhhHHHHHHHhcCh-hhhcchhHHHHHHhhhcchhcccc
Confidence            7774 678888888887765 3444444433  567777776666

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.17  E-value=1.8e-11  Score=138.74  Aligned_cols=247  Identities=25%  Similarity=0.325  Sum_probs=157.1

Q ss_pred             CCccEEEecCCCCCCCCCCCCCCCceEEEccCCC--hhhhccc-ccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEee
Q 036772           46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSN--IEQLWNG-VQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDL  121 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~--l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L  121 (583)
                      ...|...+-++.+..++.....++|++|-+..|.  +..++.. |..++.|++|||++|..+..+|+ ++.+-+|++|++
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L  602 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL  602 (889)
T ss_pred             hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence            4789999999999999988877799999999986  6666544 88999999999999999999995 888999999999


Q ss_pred             eCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCC-Cc-cccc---ccCCCcCEEeccCCCCc
Q 036772          122 VGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCS-NL-KRFL---EISCNIENLDLSETAIE  195 (583)
Q Consensus       122 ~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~-~l-~~~~---~~~~~L~~L~L~~~~i~  195 (583)
                      ++ +.+..+|.++++|++|.+||+..+..+..+|... .+.+|++|.+..-. .. ....   ..+.+|+.+....... 
T Consensus       603 ~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-  680 (889)
T KOG4658|consen  603 SD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-  680 (889)
T ss_pred             cC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-
Confidence            99 4577999999999999999999988887776655 59999999987643 00 1111   1222333333322222 


Q ss_pred             cccccccCCCCcc----EEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccE
Q 036772          196 ELPSSIGNLSRLV----RLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVD  271 (583)
Q Consensus       196 ~lp~~i~~l~~L~----~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~  271 (583)
                      .+-..+..+.+|.    .+.+.+ ......+..+..+.+|+.|.+.+|...+...........+.        ....+..
T Consensus       681 ~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~--------~f~~l~~  751 (889)
T KOG4658|consen  681 LLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL--------CFPNLSK  751 (889)
T ss_pred             HhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhcccccccchhh--------hHHHHHH
Confidence            1111122223332    222222 22234555666777778888777766543222111111000        0001222


Q ss_pred             EEeccCCCcccCccCCCCCCCCEEEccCCCCc
Q 036772          272 MSLVDCGITELPESLGRSPSLKFLNLAENDFE  303 (583)
Q Consensus       272 L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~  303 (583)
                      +.+.+|.....+.+.-..++|+.|.+..+...
T Consensus       752 ~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~  783 (889)
T KOG4658|consen  752 VSILNCHMLRDLTWLLFAPHLTSLSLVSCRLL  783 (889)
T ss_pred             HHhhccccccccchhhccCcccEEEEeccccc
Confidence            33333433334444555677777777777643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.97  E-value=6.9e-10  Score=126.11  Aligned_cols=259  Identities=25%  Similarity=0.311  Sum_probs=151.2

Q ss_pred             CCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCC-CCCCCC--CCCCCCcCEEeeeCCCCchhhhh
Q 036772           56 YPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQ-LSRIPD--LSLALNLEWLDLVGCASLIEIHS  132 (583)
Q Consensus        56 ~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~-l~~~p~--l~~l~~L~~L~L~~~~~l~~~~~  132 (583)
                      ......|........+...+.++.+..++... ..++|++|-+..+.. +..++.  |..++.|++|||++|..+.++|.
T Consensus       511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~  589 (889)
T KOG4658|consen  511 VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS  589 (889)
T ss_pred             cCccccccccchhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence            44555666666677888888888887775543 344788888888763 444443  77788888888888888888888


Q ss_pred             hccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEe
Q 036772          133 SIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLD  211 (583)
Q Consensus       133 ~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~  211 (583)
                      +|+.|-+|++|++++ +.++.+|.++ +++.|.+|++..+..+..+                    |.....+++|++|.
T Consensus       590 ~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~--------------------~~i~~~L~~Lr~L~  648 (889)
T KOG4658|consen  590 SIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESI--------------------PGILLELQSLRVLR  648 (889)
T ss_pred             HHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccc--------------------cchhhhcccccEEE
Confidence            888888888888877 6677777777 6777777777664433221                    22344467777777


Q ss_pred             eeCCCC--CccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCC
Q 036772          212 LTNCSR--LKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRS  289 (583)
Q Consensus       212 L~~~~~--l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l  289 (583)
                      +..-..  ....-..+.++.+|+.|.+..++.  .+-+.+..+..|..+          .+.+.+.+|.....+..++.+
T Consensus       649 l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~----------~~~l~~~~~~~~~~~~~~~~l  716 (889)
T KOG4658|consen  649 LPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSL----------LQSLSIEGCSKRTLISSLGSL  716 (889)
T ss_pred             eeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHH----------hHhhhhcccccceeecccccc
Confidence            654321  111222334445555554433222  111111122222111          222233334444466677788


Q ss_pred             CCCCEEEccCCCCcccCh-h-----hhc-cCcccccccccccccccCC--CCCCCC-eeeeeCCcCccc
Q 036772          290 PSLKFLNLAENDFEKIPS-S-----IKQ-LSNLLFLTLQNCKRLQSLP--ELPCGS-NIFARYCTSLET  348 (583)
Q Consensus       290 ~~L~~L~Ls~n~l~~lp~-~-----i~~-l~~L~~L~L~~c~~L~~lp--~lp~~~-~l~~~~c~sL~~  348 (583)
                      .+|+.|.+.++.+.++.. +     ... ++++..+.+.+|..++.+.  .+++++ .+....|..++.
T Consensus       717 ~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~  785 (889)
T KOG4658|consen  717 GNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLED  785 (889)
T ss_pred             cCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccccccc
Confidence            888888888887653321 1     111 4456666666666655544  345555 555555554443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=1.2e-10  Score=116.87  Aligned_cols=174  Identities=20%  Similarity=0.197  Sum_probs=79.0

Q ss_pred             CCCCceEEEccCCChhhh---cccccCCCCccEEeccCCCCCCCCCC--CCCCCCcCEEeeeCCCCch-hhhhhccCCCC
Q 036772           66 IPEHLVSLEMPHSNIEQL---WNGVQNLAALKRLNLSYCKQLSRIPD--LSLALNLEWLDLVGCASLI-EIHSSIQHLNK  139 (583)
Q Consensus        66 ~~~~L~~L~L~~~~l~~l---~~~~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~  139 (583)
                      .+++++.|||++|-+...   -.-...+|+|+.|+|+.|+...-...  -..++.|+.|.|+.|...- .+...+..+++
T Consensus       144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs  223 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS  223 (505)
T ss_pred             hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence            344455555554433321   12234555555555555543332221  1234455555555554332 22333345555


Q ss_pred             CCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCccc----ccccCCCcCEEeccCCCCccc--ccc-----ccCCCCc
Q 036772          140 LVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKR----FLEISCNIENLDLSETAIEEL--PSS-----IGNLSRL  207 (583)
Q Consensus       140 L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~----~~~~~~~L~~L~L~~~~i~~l--p~~-----i~~l~~L  207 (583)
                      |+.|+|.+|..+..-.... -+..|++|+|+++..+..    .-..++.|+.|+++.+++.++  |+.     ...+++|
T Consensus       224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL  303 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL  303 (505)
T ss_pred             HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence            5555555543222211111 345555666655433321    112234555555666666543  332     2456677


Q ss_pred             cEEeeeCCCCCcc-ccccccCCCCCcEEEccCC
Q 036772          208 VRLDLTNCSRLKS-VSNSLCNLKSLQYLFLSGC  239 (583)
Q Consensus       208 ~~L~L~~~~~l~~-lp~~l~~l~~L~~L~l~~c  239 (583)
                      ++|++..|+.... --..+..+++|+.|.+.++
T Consensus       304 ~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  304 EYLNISENNIRDWRSLNHLRTLENLKHLRITLN  336 (505)
T ss_pred             eeeecccCccccccccchhhccchhhhhhcccc
Confidence            7777776655211 1123444555565555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.87  E-value=7.6e-11  Score=121.74  Aligned_cols=212  Identities=28%  Similarity=0.387  Sum_probs=133.7

Q ss_pred             EEccCCChhhhcccc--cCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCC
Q 036772           73 LEMPHSNIEQLWNGV--QNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCIS  150 (583)
Q Consensus        73 L~L~~~~l~~l~~~~--~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~  150 (583)
                      |.|++-+++.+|.+-  ..+.--...||+.|+......++..+..|+.+.|..|. +..+|..+.++..|.+|||+. +.
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~-Nq  132 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSS-NQ  132 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhcc-ch
Confidence            444444555544332  12223334555555432222234444455555555432 345566666666666666665 45


Q ss_pred             CCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCC
Q 036772          151 LKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKS  230 (583)
Q Consensus       151 l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~  230 (583)
                      +..+|..+..--|+.                     |-+++|+++.+|..++.+..|..|+.+.|. +..+|..++.+.+
T Consensus       133 lS~lp~~lC~lpLkv---------------------li~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~s  190 (722)
T KOG0532|consen  133 LSHLPDGLCDLPLKV---------------------LIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTS  190 (722)
T ss_pred             hhcCChhhhcCccee---------------------EEEecCccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHH
Confidence            556665553223444                     444456777788888877888888888764 4557777888888


Q ss_pred             CcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhh-
Q 036772          231 LQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSI-  309 (583)
Q Consensus       231 L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i-  309 (583)
                      |+.|.+..| .+..+|+.+..++               |.+||++.|++..+|-.+.++..|++|.|.+|.+++-|..| 
T Consensus       191 lr~l~vrRn-~l~~lp~El~~Lp---------------Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC  254 (722)
T KOG0532|consen  191 LRDLNVRRN-HLEDLPEELCSLP---------------LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQIC  254 (722)
T ss_pred             HHHHHHhhh-hhhhCCHHHhCCc---------------eeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHH
Confidence            888888774 4556777666543               66667777777779999999999999999999999888765 


Q ss_pred             --hccCccccccccccc
Q 036772          310 --KQLSNLLFLTLQNCK  324 (583)
Q Consensus       310 --~~l~~L~~L~L~~c~  324 (583)
                        +...--++|++.-|.
T Consensus       255 ~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  255 EKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hccceeeeeeecchhcc
Confidence              334445677777773

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.87  E-value=2.6e-09  Score=112.90  Aligned_cols=173  Identities=39%  Similarity=0.470  Sum_probs=77.5

Q ss_pred             CCcCEEeeeCCCCchhhhhhccCCC-CCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCcccccc---cCCCcCEEe
Q 036772          114 LNLEWLDLVGCASLIEIHSSIQHLN-KLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLE---ISCNIENLD  188 (583)
Q Consensus       114 ~~L~~L~L~~~~~l~~~~~~i~~l~-~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~---~~~~L~~L~  188 (583)
                      +.++.|++.++ ....++...+.+. +|+.|++++ +.+..+|..+ .++.|+.|++++| .+..++.   ...+|+.|+
T Consensus       116 ~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCc-ccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhee
Confidence            44444444442 2333333333332 444444444 3344443222 4444444444442 2222222   334444555


Q ss_pred             ccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccC
Q 036772          189 LSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQN  268 (583)
Q Consensus       189 L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~  268 (583)
                      +++|.+..+|..+.....|++|.+++|.. ...+..+.++..+..|.+..+ .+..++..++.++++++|++++|.+.  
T Consensus       193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~~~~l~~l~~L~~s~n~i~--  268 (394)
T COG4886         193 LSGNKISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSNN-KLEDLPESIGNLSNLETLDLSNNQIS--  268 (394)
T ss_pred             ccCCccccCchhhhhhhhhhhhhhcCCcc-eecchhhhhcccccccccCCc-eeeeccchhccccccceecccccccc--
Confidence            55556666665554555566666665531 223334444455554443332 22222344444444444444443333  


Q ss_pred             ccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccC
Q 036772          269 LVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIP  306 (583)
Q Consensus       269 L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp  306 (583)
                                  +++. ++.+.+|+.|+++++.+..++
T Consensus       269 ------------~i~~-~~~~~~l~~L~~s~n~~~~~~  293 (394)
T COG4886         269 ------------SISS-LGSLTNLRELDLSGNSLSNAL  293 (394)
T ss_pred             ------------cccc-ccccCccCEEeccCccccccc
Confidence                        2433 555666666666666655443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.83  E-value=7.3e-10  Score=106.14  Aligned_cols=55  Identities=29%  Similarity=0.346  Sum_probs=26.3

Q ss_pred             CceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCC
Q 036772           69 HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGC  124 (583)
Q Consensus        69 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~  124 (583)
                      .|++|||++|.|+.+.++++-+|+++.|++|+|.+. .+..+..+++|+.|+|++|
T Consensus       285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N  339 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGN  339 (490)
T ss_pred             hhhhccccccchhhhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccc
Confidence            345555555555555555555555555555555322 2222444444444444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.82  E-value=3.8e-09  Score=111.71  Aligned_cols=196  Identities=32%  Similarity=0.325  Sum_probs=116.6

Q ss_pred             EEEecCCCC-CCCCCCCCCCCceEEEccCCChhhhcccccCCC-CccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCc
Q 036772           50 YFQWDGYPL-KSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLA-ALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASL  127 (583)
Q Consensus        50 ~L~l~~~~l-~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~-~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l  127 (583)
                      .+....+.+ ..+......+.+..|++.++.+..++.....+. +|+.|++++|+.......+..+++|+.|++++|. +
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l  175 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-L  175 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-h
Confidence            355555554 222222344556666666666666665555553 6666666666433322345666666666666643 4


Q ss_pred             hhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCcccc--cccCCCcCEEeccCCCCccccccccCC
Q 036772          128 IEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRF--LEISCNIENLDLSETAIEELPSSIGNL  204 (583)
Q Consensus       128 ~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~--~~~~~~L~~L~L~~~~i~~lp~~i~~l  204 (583)
                      ..++...+.++.|+.|++++ +.+..+|..+ ....|++|.++++..+...  .....++..+.+.++.+..++..++.+
T Consensus       176 ~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l  254 (394)
T COG4886         176 SDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNL  254 (394)
T ss_pred             hhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccc
Confidence            44555444666666666666 5566666654 3444667766665322211  122334555666777777777778888


Q ss_pred             CCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcccccc
Q 036772          205 SRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEI  249 (583)
Q Consensus       205 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l  249 (583)
                      +.++.|++++|... .++. ++.+.+|+.|+++++......|...
T Consensus       255 ~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         255 SNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             cccceecccccccc-cccc-ccccCccCEEeccCccccccchhhh
Confidence            88888888886554 3343 7788888888888877666555543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.81  E-value=1.4e-09  Score=104.18  Aligned_cols=126  Identities=27%  Similarity=0.256  Sum_probs=93.5

Q ss_pred             CCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEc
Q 036772          181 SCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLA  260 (583)
Q Consensus       181 ~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  260 (583)
                      +..|++++|++|.|+.+..++.-.+.++.|++++|.....  ..+..+++|+.||+++|.. ..+...-..+.+.++|.+
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLL-AECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchh-HhhhhhHhhhcCEeeeeh
Confidence            4568889999999999999999999999999999876543  2377889999999998643 222222234556667777


Q ss_pred             cCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccC--hhhhccCccccccccccc
Q 036772          261 NETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIP--SSIKQLSNLLFLTLQNCK  324 (583)
Q Consensus       261 ~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~  324 (583)
                      ++|.+.+               ...++.+-+|..||+++|+|+.+-  ..|++||.|+.+.+.+++
T Consensus       360 a~N~iE~---------------LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  360 AQNKIET---------------LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhhHhh---------------hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            7766543               234667778888888888887553  468888888888888874

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=5.4e-09  Score=105.20  Aligned_cols=152  Identities=22%  Similarity=0.206  Sum_probs=109.0

Q ss_pred             CCCCceEEEccCCChhhhcc--cccCCCCccEEeccCCCCCCCCC--C-CCCCCCcCEEeeeCCCCchhhhhh-ccCCCC
Q 036772           66 IPEHLVSLEMPHSNIEQLWN--GVQNLAALKRLNLSYCKQLSRIP--D-LSLALNLEWLDLVGCASLIEIHSS-IQHLNK  139 (583)
Q Consensus        66 ~~~~L~~L~L~~~~l~~l~~--~~~~l~~L~~L~Ls~~~~l~~~p--~-l~~l~~L~~L~L~~~~~l~~~~~~-i~~l~~  139 (583)
                      +.++|++..|.+..+...+.  ..+.|++++.|||+.|-+..--+  . ...+|+|+.|+|+.|....-..+. -..+..
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            67889999999988887663  57899999999999984433222  1 467899999999998654332221 236889


Q ss_pred             CCEEEccCCCCCC-cCCCcC-CCCCccEEEecCCCCcc--cc-cccCCCcCEEeccCCCCcccc--ccccCCCCccEEee
Q 036772          140 LVFLNLGRCISLK-SLPTGI-NLDSLKVLYLGGCSNLK--RF-LEISCNIENLDLSETAIEELP--SSIGNLSRLVRLDL  212 (583)
Q Consensus       140 L~~L~L~~c~~l~-~lp~~~-~l~~L~~L~L~~c~~l~--~~-~~~~~~L~~L~L~~~~i~~lp--~~i~~l~~L~~L~L  212 (583)
                      |+.|.|+.|..-. ++-... .+|+|+.|++.+|..+.  .. ...+..|++|+|++|.+..++  ..++.+++|..|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            9999999985432 111111 68999999999985332  11 234567888888888887766  45778888888888


Q ss_pred             eCCCC
Q 036772          213 TNCSR  217 (583)
Q Consensus       213 ~~~~~  217 (583)
                      +.|..
T Consensus       279 s~tgi  283 (505)
T KOG3207|consen  279 SSTGI  283 (505)
T ss_pred             cccCc
Confidence            77654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.72  E-value=1e-08  Score=94.19  Aligned_cols=109  Identities=25%  Similarity=0.323  Sum_probs=25.0

Q ss_pred             CCCCCCCCCCCCceEEEccCCChhhhccccc-CCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhc-c
Q 036772           58 LKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQ-NLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSI-Q  135 (583)
Q Consensus        58 l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~-~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i-~  135 (583)
                      ++..|...++.++++|+|++|.|+.+ +.+. .+.+|+.|+|++|. ++.++.+..+++|++|++++|... .+.+.+ .
T Consensus         9 i~~~~~~~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~   85 (175)
T PF14580_consen    9 IEQIAQYNNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRIS-SISEGLDK   85 (175)
T ss_dssp             ----------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHH
T ss_pred             cccccccccccccccccccccccccc-cchhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCC-ccccchHH
Confidence            33444444555566666666666655 2333 45666666666663 444555666666666666665432 332223 3


Q ss_pred             CCCCCCEEEccCCCCCCcCCCcC---CCCCccEEEecC
Q 036772          136 HLNKLVFLNLGRCISLKSLPTGI---NLDSLKVLYLGG  170 (583)
Q Consensus       136 ~l~~L~~L~L~~c~~l~~lp~~~---~l~~L~~L~L~~  170 (583)
                      .+++|+.|++++ +.+.++..-.   .+++|+.|++.+
T Consensus        86 ~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~  122 (175)
T PF14580_consen   86 NLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEG  122 (175)
T ss_dssp             H-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT
T ss_pred             hCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccC
Confidence            466677777765 3444432211   344555555444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.69  E-value=3.4e-09  Score=103.90  Aligned_cols=242  Identities=18%  Similarity=0.168  Sum_probs=117.3

Q ss_pred             CCCCceEEEccCCChh-----hhcccccCCCCccEEeccCCCCCC----CCC--------CCCCCCCcCEEeeeCCCCch
Q 036772           66 IPEHLVSLEMPHSNIE-----QLWNGVQNLAALKRLNLSYCKQLS----RIP--------DLSLALNLEWLDLVGCASLI  128 (583)
Q Consensus        66 ~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~Ls~~~~l~----~~p--------~l~~l~~L~~L~L~~~~~l~  128 (583)
                      ....++.+++++|.+.     .+-..+.+.++|+..++++- .+.    ++|        .+..++.|++|+|++|-...
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            3456677777777654     23344566667777777653 111    122        12344455555555554322


Q ss_pred             hhh----hhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCcccc-----c
Q 036772          129 EIH----SSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELP-----S  199 (583)
Q Consensus       129 ~~~----~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp-----~  199 (583)
                      .-+    .-+.++..|++|.|.+|. ++......--..|..|.      ..+-......|+.+...+|++..-+     .
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~  179 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELA------VNKKAASKPKLRVFICGRNRLENGGATALAE  179 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHH------HHhccCCCcceEEEEeeccccccccHHHHHH
Confidence            211    223445555555555542 11110000000000000      0001112234555555555554332     2


Q ss_pred             cccCCCCccEEeeeCCCCCcc----ccccccCCCCCcEEEccCCCCCC----ccccccCCCCcccEEEccCCccccCccE
Q 036772          200 SIGNLSRLVRLDLTNCSRLKS----VSNSLCNLKSLQYLFLSGCLKLE----KLPEEIGNLESLKIMLANETAISQNLVD  271 (583)
Q Consensus       200 ~i~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~~L~~  271 (583)
                      .+...+.|+.+.+..|.+...    +...+..+++|+.||+.+|....    .+...++.+++|+.|+++.|.+...   
T Consensus       180 ~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~---  256 (382)
T KOG1909|consen  180 AFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENE---  256 (382)
T ss_pred             HHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccc---
Confidence            344556666666666544322    23345556666666666654432    2333444455554444444333210   


Q ss_pred             EEeccCCCcccCccC-CCCCCCCEEEccCCCCc-----ccChhhhccCccccccccccc
Q 036772          272 MSLVDCGITELPESL-GRSPSLKFLNLAENDFE-----KIPSSIKQLSNLLFLTLQNCK  324 (583)
Q Consensus       272 L~L~~~~l~~lp~~l-~~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~  324 (583)
                            +-..+.+.+ ...|+|+.|.+.+|.++     .+..++...+.|+.|+|++|+
T Consensus       257 ------Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  257 ------GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             ------cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence                  000022222 34688999999999876     334456678889999999884

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.67  E-value=4.8e-10  Score=115.97  Aligned_cols=189  Identities=25%  Similarity=0.326  Sum_probs=150.9

Q ss_pred             CccEEEecCCCCCCCCCCC-CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCC
Q 036772           47 ELRYFQWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCA  125 (583)
Q Consensus        47 ~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~  125 (583)
                      .-...+++.|.+..+|..+ .+..|+.+.+..|.+..+|+.+.++..|.+|||+.|+.....+.+..+ -|+.|.+++| 
T Consensus        76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNN-  153 (722)
T KOG0532|consen   76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNN-  153 (722)
T ss_pred             chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecC-
Confidence            4567888999999999877 667788899999999999999999999999999999644433345544 4899999985 


Q ss_pred             CchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCcccccccCCC--cCEEeccCCCCcccccccc
Q 036772          126 SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEISCN--IENLDLSETAIEELPSSIG  202 (583)
Q Consensus       126 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~~~~~--L~~L~L~~~~i~~lp~~i~  202 (583)
                      .++.+|..++.+.+|..||.+. +.+..+|..+ .+.+|+.|++.. +.+..+|+.+..  |..||++.|++..+|-.|.
T Consensus       154 kl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~LpLi~lDfScNkis~iPv~fr  231 (722)
T KOG0532|consen  154 KLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLPLIRLDFSCNKISYLPVDFR  231 (722)
T ss_pred             ccccCCcccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCceeeeecccCceeecchhhh
Confidence            4778899999999999999987 5677788777 899999999988 456677776664  5679999999999999999


Q ss_pred             CCCCccEEeeeCCCCCccccccccC---CCCCcEEEccCCC
Q 036772          203 NLSRLVRLDLTNCSRLKSVSNSLCN---LKSLQYLFLSGCL  240 (583)
Q Consensus       203 ~l~~L~~L~L~~~~~l~~lp~~l~~---l~~L~~L~l~~c~  240 (583)
                      +|+.|++|-|.+|.. .+-|..++-   ..--++|++..|.
T Consensus       232 ~m~~Lq~l~LenNPL-qSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  232 KMRHLQVLQLENNPL-QSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hhhhheeeeeccCCC-CCChHHHHhccceeeeeeecchhcc
Confidence            999999999998764 555555442   3334777777773

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.64  E-value=1.8e-08  Score=92.53  Aligned_cols=123  Identities=21%  Similarity=0.204  Sum_probs=35.3

Q ss_pred             CCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccc-cCCCCcc
Q 036772           16 RRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALK   94 (583)
Q Consensus        16 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~-~~l~~L~   94 (583)
                      .++|.|++.+|.+      .. .+.+.....+|+.|++++|.++.++....+++|++|++++|.++.+.+++ ..+++|+
T Consensus        19 ~~~~~L~L~~n~I------~~-Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~   91 (175)
T PF14580_consen   19 VKLRELNLRGNQI------ST-IENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ   91 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred             ccccccccccccc------cc-ccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence            3456666666532      11 12333211466666666666666655445666666666666666664443 3466666


Q ss_pred             EEeccCCCCCC--CCCCCCCCCCcCEEeeeCCCCchh---hhhhccCCCCCCEEEc
Q 036772           95 RLNLSYCKQLS--RIPDLSLALNLEWLDLVGCASLIE---IHSSIQHLNKLVFLNL  145 (583)
Q Consensus        95 ~L~Ls~~~~l~--~~p~l~~l~~L~~L~L~~~~~l~~---~~~~i~~l~~L~~L~L  145 (583)
                      .|+|++|++..  ++..++.+++|+.|+|.+|+....   -...+..+++|+.||-
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            66666664322  122345556666666666543221   1123344555555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.62  E-value=4.7e-09  Score=102.95  Aligned_cols=248  Identities=21%  Similarity=0.219  Sum_probs=139.7

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCC----CCCCCCCCCCCceEEEccCCChhhhcccccC
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPL----KSLPSKNIPEHLVSLEMPHSNIEQLWNGVQN   89 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l----~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~   89 (583)
                      .|..+..|++++|.+ +.+..-.+...+...+ +||..+|++.-.    ..+|.               .+..+...+..
T Consensus        28 ~~~s~~~l~lsgnt~-G~EAa~~i~~~L~~~~-~L~~v~~sd~ftGR~~~Ei~e---------------~L~~l~~aL~~   90 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTF-GTEAARAIAKVLASKK-ELREVNLSDMFTGRLKDEIPE---------------ALKMLSKALLG   90 (382)
T ss_pred             ccCceEEEeccCCch-hHHHHHHHHHHHhhcc-cceeeehHhhhcCCcHHHHHH---------------HHHHHHHHHhc
Confidence            555666666666643 1111222334444442 566666654321    11111               12233445677


Q ss_pred             CCCccEEeccCCCCCCCCC-C----CCCCCCcCEEeeeCCCCchhhhhh-------------ccCCCCCCEEEccCCCCC
Q 036772           90 LAALKRLNLSYCKQLSRIP-D----LSLALNLEWLDLVGCASLIEIHSS-------------IQHLNKLVFLNLGRCISL  151 (583)
Q Consensus        90 l~~L~~L~Ls~~~~l~~~p-~----l~~l~~L~~L~L~~~~~l~~~~~~-------------i~~l~~L~~L~L~~c~~l  151 (583)
                      +++|++||||+|.+-...+ .    ++++..|++|.|.+|.....-...             ++.-++|+.+...+ +++
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrl  169 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRL  169 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-ccc
Confidence            8899999999987665543 1    567889999999998654332222             23344555555444 333


Q ss_pred             CcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCc-----cccccccCCCCccEEeeeCCCCCcc----cc
Q 036772          152 KSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIE-----ELPSSIGNLSRLVRLDLTNCSRLKS----VS  222 (583)
Q Consensus       152 ~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~-----~lp~~i~~l~~L~~L~L~~~~~l~~----lp  222 (583)
                      .+-+...               +.......+.|+.+.+..|.|.     -+...+.++++|++|+|.+|.....    +.
T Consensus       170 en~ga~~---------------~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  170 ENGGATA---------------LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             ccccHHH---------------HHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            3332211               0111122244555555555554     2445678899999999999876543    45


Q ss_pred             ccccCCCCCcEEEccCCCCCCcc----cccc-CCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEc
Q 036772          223 NSLCNLKSLQYLFLSGCLKLEKL----PEEI-GNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNL  297 (583)
Q Consensus       223 ~~l~~l~~L~~L~l~~c~~l~~l----p~~l-~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L  297 (583)
                      ..++.+++|+.|++++|..-..-    -+.+ ...++|+.|.+.+|.|...         ....+-..+...+.|+.|+|
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d---------a~~~la~~~~ek~dL~kLnL  305 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD---------AALALAACMAEKPDLEKLNL  305 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH---------HHHHHHHHHhcchhhHHhcC
Confidence            56777889999999998754321    1111 2346666666666655421         00003334556889999999


Q ss_pred             cCCCCc
Q 036772          298 AENDFE  303 (583)
Q Consensus       298 s~n~l~  303 (583)
                      ++|.+.
T Consensus       306 ngN~l~  311 (382)
T KOG1909|consen  306 NGNRLG  311 (382)
T ss_pred             Cccccc
Confidence            999883

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=2.3e-09  Score=102.76  Aligned_cols=157  Identities=25%  Similarity=0.296  Sum_probs=104.5

Q ss_pred             CceEEEccCCChh--hhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhh--hhccCCCCCCEE
Q 036772           69 HLVSLEMPHSNIE--QLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIH--SSIQHLNKLVFL  143 (583)
Q Consensus        69 ~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~--~~i~~l~~L~~L  143 (583)
                      .|++|||++..++  .+-.-++.+.+|+.|.|.+++.-..+. .+.+-.+|+.|+|+.|...++..  -.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4888888888776  343446778888888888876555444 46777788888888887776543  345678888888


Q ss_pred             EccCCCCCCcCCCcC---CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCcc
Q 036772          144 NLGRCISLKSLPTGI---NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKS  220 (583)
Q Consensus       144 ~L~~c~~l~~lp~~~---~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~  220 (583)
                      +|+.|-..+..-..+   --+.|..|+++||..--                 ....+..-...+++|..|||++|..+..
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-----------------~~sh~~tL~~rcp~l~~LDLSD~v~l~~  328 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-----------------QKSHLSTLVRRCPNLVHLDLSDSVMLKN  328 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-----------------hhhHHHHHHHhCCceeeeccccccccCc
Confidence            888876554432222   24567777777764211                 0112222246788999999998877654


Q ss_pred             -ccccccCCCCCcEEEccCCCCC
Q 036772          221 -VSNSLCNLKSLQYLFLSGCLKL  242 (583)
Q Consensus       221 -lp~~l~~l~~L~~L~l~~c~~l  242 (583)
                       ....+.+++.|++|.++.|..+
T Consensus       329 ~~~~~~~kf~~L~~lSlsRCY~i  351 (419)
T KOG2120|consen  329 DCFQEFFKFNYLQHLSLSRCYDI  351 (419)
T ss_pred             hHHHHHHhcchheeeehhhhcCC
Confidence             3445677888888888888643

>PLN03150 hypothetical protein; Provisional

Probab=98.41  E-value=5.9e-07  Score=100.07  Aligned_cols=111  Identities=25%  Similarity=0.410  Sum_probs=77.6

Q ss_pred             ccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccC
Q 036772          207 LVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESL  286 (583)
Q Consensus       207 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l  286 (583)
                      ++.|+|++|.....+|..++.+++|+.|++++|...+.+|..++.+++|+.|++++|.+..             .+|..+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg-------------~iP~~l  486 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-------------SIPESL  486 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC-------------CCchHH
Confidence            6667777777666677777777777777777777667777777777776666666655443             267778


Q ss_pred             CCCCCCCEEEccCCCCc-ccChhhhcc-CcccccccccccccccCC
Q 036772          287 GRSPSLKFLNLAENDFE-KIPSSIKQL-SNLLFLTLQNCKRLQSLP  330 (583)
Q Consensus       287 ~~l~~L~~L~Ls~n~l~-~lp~~i~~l-~~L~~L~L~~c~~L~~lp  330 (583)
                      +.+++|+.|+|++|.++ .+|..++.+ .++..+++.+|+.+-..|
T Consensus       487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            88888888888888877 777776553 355667777765544443

>PLN03150 hypothetical protein; Provisional

Probab=98.30  E-value=1.4e-06  Score=97.03  Aligned_cols=102  Identities=24%  Similarity=0.224  Sum_probs=65.4

Q ss_pred             ceEEEccCCChh-hhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccC
Q 036772           70 LVSLEMPHSNIE-QLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGR  147 (583)
Q Consensus        70 L~~L~L~~~~l~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~  147 (583)
                      ++.|+|+++.+. .+|..+..+++|+.|+|++|.....+| .++.+++|+.|+|++|.....+|..++.+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            666777777666 456666677777777777776665666 466677777777777666666676777777777777776


Q ss_pred             CCCCCcCCCcC--CCCCccEEEecCC
Q 036772          148 CISLKSLPTGI--NLDSLKVLYLGGC  171 (583)
Q Consensus       148 c~~l~~lp~~~--~l~~L~~L~L~~c  171 (583)
                      |.....+|..+  ...++..+++.+|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCC
Confidence            65555666554  1234445555554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.29  E-value=2e-08  Score=100.75  Aligned_cols=227  Identities=23%  Similarity=0.321  Sum_probs=122.4

Q ss_pred             CCccEEeccCCCCCCCCC---CCCCCCCcCEEeeeCCCCchhhh-hh-ccCCCCCCEEEccCCCCCCcCCCc-C--CCCC
Q 036772           91 AALKRLNLSYCKQLSRIP---DLSLALNLEWLDLVGCASLIEIH-SS-IQHLNKLVFLNLGRCISLKSLPTG-I--NLDS  162 (583)
Q Consensus        91 ~~L~~L~Ls~~~~l~~~p---~l~~l~~L~~L~L~~~~~l~~~~-~~-i~~l~~L~~L~L~~c~~l~~lp~~-~--~l~~  162 (583)
                      ..||.|.+.+|+....-+   ....+||++.|++.+|..+++.. .+ -..+.+|++|++..|..+++..-. +  .+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            356777777776555444   24566777777777777555322 22 246777777777777776654322 2  5777


Q ss_pred             ccEEEecCCCCccc-----ccccCCCcCEEeccCCCCc---cccccccCCCCccEEeeeCCCCCcccc--ccccCCCCCc
Q 036772          163 LKVLYLGGCSNLKR-----FLEISCNIENLDLSETAIE---ELPSSIGNLSRLVRLDLTNCSRLKSVS--NSLCNLKSLQ  232 (583)
Q Consensus       163 L~~L~L~~c~~l~~-----~~~~~~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~~~~l~~lp--~~l~~l~~L~  232 (583)
                      |++|+++.|..+..     +......++.+.+.++.-.   .+-..-+.+.-+..+++.+|..+++..  ..-..+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            77777777765543     2222233444444432111   111222345556666777776555432  2233466778


Q ss_pred             EEEccCCCCCCccc--cccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCc---ccCh
Q 036772          233 YLFLSGCLKLEKLP--EEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFE---KIPS  307 (583)
Q Consensus       233 ~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~---~lp~  307 (583)
                      .|+.++|..+...+  .--.+..+|+.|.+++++...        +..   +-..-.+++.|+.|++.++...   ++-.
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fs--------d~~---ft~l~rn~~~Le~l~~e~~~~~~d~tL~s  366 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFS--------DRG---FTMLGRNCPHLERLDLEECGLITDGTLAS  366 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhh--------hhh---hhhhhcCChhhhhhcccccceehhhhHhh
Confidence            88888877654332  122345666666666554211        111   1111234566666766666532   2322


Q ss_pred             hhhccCccccccccccccccc
Q 036772          308 SIKQLSNLLFLTLQNCKRLQS  328 (583)
Q Consensus       308 ~i~~l~~L~~L~L~~c~~L~~  328 (583)
                      .-.+++.|+.|.+++|..++.
T Consensus       367 ls~~C~~lr~lslshce~itD  387 (483)
T KOG4341|consen  367 LSRNCPRLRVLSLSHCELITD  387 (483)
T ss_pred             hccCCchhccCChhhhhhhhh
Confidence            234566777777776654443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.29  E-value=2.7e-06  Score=87.67  Aligned_cols=64  Identities=23%  Similarity=0.386  Sum_probs=44.9

Q ss_pred             hccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccC-CCcCEEeccCC-CCccccc
Q 036772          133 SIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEIS-CNIENLDLSET-AIEELPS  199 (583)
Q Consensus       133 ~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~-~~L~~L~L~~~-~i~~lp~  199 (583)
                      -+..+.+++.|++++| .++.+|.  -..+|++|.+++|..+..+|..+ .+|+.|+++++ .+..+|.
T Consensus        47 r~~~~~~l~~L~Is~c-~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         47 QIEEARASGRLYIKDC-DIESLPV--LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             HHHHhcCCCEEEeCCC-CCcccCC--CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccccc
Confidence            3556789999999987 7888883  24569999999998887777533 35666666655 4444443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.26  E-value=1.4e-07  Score=100.29  Aligned_cols=102  Identities=27%  Similarity=0.324  Sum_probs=44.8

Q ss_pred             CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEc
Q 036772           66 IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNL  145 (583)
Q Consensus        66 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L  145 (583)
                      .+++|..|++.+|.++++...+..+++|++|++++| .+..+..+..++.|+.|++.+|....  ...+..++.|+.+++
T Consensus        93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l  169 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEGLSTLTLLKELNLSGNLISD--ISGLESLKSLKLLDL  169 (414)
T ss_pred             cccceeeeeccccchhhcccchhhhhcchheecccc-ccccccchhhccchhhheeccCcchh--ccCCccchhhhcccC
Confidence            344455555555555544333444555555555554 23333344444445555555543221  122333445555555


Q ss_pred             cCCCCCCcCCC--cCCCCCccEEEecCC
Q 036772          146 GRCISLKSLPT--GINLDSLKVLYLGGC  171 (583)
Q Consensus       146 ~~c~~l~~lp~--~~~l~~L~~L~L~~c  171 (583)
                      ++ +.+..+..  .-.+.+|+.+.+.++
T Consensus       170 ~~-n~i~~ie~~~~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  170 SY-NRIVDIENDELSELISLEELDLGGN  196 (414)
T ss_pred             Cc-chhhhhhhhhhhhccchHHHhccCC
Confidence            44 23333333  124444555555443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.23  E-value=6.9e-08  Score=96.93  Aligned_cols=248  Identities=22%  Similarity=0.295  Sum_probs=146.8

Q ss_pred             CCceEEEccCCC---hhhhcccccCCCCccEEeccCCCCCCCCC--CC-CCCCCcCEEeeeCCCCchhhh-h-hccCCCC
Q 036772           68 EHLVSLEMPHSN---IEQLWNGVQNLAALKRLNLSYCKQLSRIP--DL-SLALNLEWLDLVGCASLIEIH-S-SIQHLNK  139 (583)
Q Consensus        68 ~~L~~L~L~~~~---l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p--~l-~~l~~L~~L~L~~~~~l~~~~-~-~i~~l~~  139 (583)
                      -.|++|.+++..   ...+-....+++++++|++.+|..+++..  .+ ..+++|++|++..|..++... . -...+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            346777777653   23343446789999999999998777644  23 357899999999998877543 2 3467999


Q ss_pred             CCEEEccCCCCCCcCCCc--C-CCCCccEEEecCCCCccc--c---cccCCCcCEEeccCC-CCcccc--ccccCCCCcc
Q 036772          140 LVFLNLGRCISLKSLPTG--I-NLDSLKVLYLGGCSNLKR--F---LEISCNIENLDLSET-AIEELP--SSIGNLSRLV  208 (583)
Q Consensus       140 L~~L~L~~c~~l~~lp~~--~-~l~~L~~L~L~~c~~l~~--~---~~~~~~L~~L~L~~~-~i~~lp--~~i~~l~~L~  208 (583)
                      |++|+++.|..++.-...  . +++.++.+.+.||..++.  +   ......+..+++..+ .++...  ..-..+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            999999999888762111  1 577788888888876532  1   111123444554443 222211  1123567889


Q ss_pred             EEeeeCCCCCcccc--ccccCCCCCcEEEccCCCCCCccc--cccCCCCcccEEEccCCccccCccEEEeccCCCcccCc
Q 036772          209 RLDLTNCSRLKSVS--NSLCNLKSLQYLFLSGCLKLEKLP--EEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPE  284 (583)
Q Consensus       209 ~L~L~~~~~l~~lp--~~l~~l~~L~~L~l~~c~~l~~lp--~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~  284 (583)
                      .|..++|......+  .-..+..+|+.|-+.+|..+...-  ..-.+.+.|+.+++.+......           .++-.
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d-----------~tL~s  366 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD-----------GTLAS  366 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh-----------hhHhh
Confidence            99999888765432  223456889999999988654321  1123455666555555432210           00222


Q ss_pred             cCCCCCCCCEEEccCCC-Ccc-----cChhhhccCccccccccccccc
Q 036772          285 SLGRSPSLKFLNLAEND-FEK-----IPSSIKQLSNLLFLTLQNCKRL  326 (583)
Q Consensus       285 ~l~~l~~L~~L~Ls~n~-l~~-----lp~~i~~l~~L~~L~L~~c~~L  326 (583)
                      .-.+++.|+.|.+++|. ++.     +..+-..+..|+.+.+++|+.+
T Consensus       367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i  414 (483)
T KOG4341|consen  367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI  414 (483)
T ss_pred             hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence            23456666666666654 221     1222234455666666666544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.22  E-value=1.3e-07  Score=100.47  Aligned_cols=212  Identities=26%  Similarity=0.236  Sum_probs=107.8

Q ss_pred             CCccEEEecCCCCCCCCCC-CCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeC
Q 036772           46 NELRYFQWDGYPLKSLPSK-NIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVG  123 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~-~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~  123 (583)
                      ..++.+++..+........ ..+..+..+.++.|.+...-..+..+.+|..|++.+|. +..+.. +..+++|++|++++
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~  127 (414)
T KOG0531|consen   49 SDLEEIDLIFNLDGSDEDLVESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSF  127 (414)
T ss_pred             chhhhhcchhccccchhhhHHHhHhHHhhccchhhhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccc
Confidence            3444444444433322222 24555666667777776644446677777777777774 334444 66777777777777


Q ss_pred             CCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCccccc---ccCCCcCEEeccCCCCcccccc
Q 036772          124 CASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFL---EISCNIENLDLSETAIEELPSS  200 (583)
Q Consensus       124 ~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~---~~~~~L~~L~L~~~~i~~lp~~  200 (583)
                      |.....  ..+..+..|+.|++.+ +.+..+...-.++.|+.+++++|.....-+   ....+++.+.+.+|.+..+.. 
T Consensus       128 N~I~~i--~~l~~l~~L~~L~l~~-N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~-  203 (414)
T KOG0531|consen  128 NKITKL--EGLSTLTLLKELNLSG-NLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG-  203 (414)
T ss_pred             cccccc--cchhhccchhhheecc-CcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc-
Confidence            654332  2345555677777776 455555443346666777776654333223   444556666666666554432 


Q ss_pred             ccCCCCccEEeeeCCCCCccccccccCCC--CCcEEEccCCCCCCccccccCCCCcccEEEccCCcc
Q 036772          201 IGNLSRLVRLDLTNCSRLKSVSNSLCNLK--SLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAI  265 (583)
Q Consensus       201 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~--~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i  265 (583)
                      +..+..+..+++..+.....-+  +..+.  .|+.++++++... ..+..+..+..+..|++..+.+
T Consensus       204 ~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~  267 (414)
T KOG0531|consen  204 LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRI  267 (414)
T ss_pred             hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccc
Confidence            2233333333444433322111  11111  2555555554322 2223344444555555444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.17  E-value=4.7e-06  Score=85.87  Aligned_cols=73  Identities=21%  Similarity=0.436  Sum_probs=44.0

Q ss_pred             ccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccC-CChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEE
Q 036772           41 LESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPH-SNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWL  119 (583)
Q Consensus        41 l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~-~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L  119 (583)
                      +..+ ++++.|++++|.++++|.  .+++|++|.+++ +.++.+|..+  .++|+.|++++|..+..+|     .+|+.|
T Consensus        48 ~~~~-~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe~L  117 (426)
T PRK15386         48 IEEA-RASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP-----ESVRSL  117 (426)
T ss_pred             HHHh-cCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc-----cccceE
Confidence            3344 577888888888888772  455677777765 4455555433  2466677776665444443     245555


Q ss_pred             eeeC
Q 036772          120 DLVG  123 (583)
Q Consensus       120 ~L~~  123 (583)
                      ++.+
T Consensus       118 ~L~~  121 (426)
T PRK15386        118 EIKG  121 (426)
T ss_pred             EeCC
Confidence            5554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.16  E-value=1.8e-06  Score=64.95  Aligned_cols=56  Identities=21%  Similarity=0.328  Sum_probs=32.3

Q ss_pred             CccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCC
Q 036772           47 ELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCK  102 (583)
Q Consensus        47 ~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~  102 (583)
                      +|++|++++|.++.+|.. | .+++|++|++++|.++.++.+ +..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            456666666666666543 2 455666666666666655532 5566666666666553

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=1.2e-07  Score=91.13  Aligned_cols=143  Identities=20%  Similarity=0.275  Sum_probs=98.8

Q ss_pred             CcCEEeccCCCCc--cccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcc--ccccCCCCcccEE
Q 036772          183 NIENLDLSETAIE--ELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKL--PEEIGNLESLKIM  258 (583)
Q Consensus       183 ~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l--p~~l~~l~~L~~L  258 (583)
                      .+++|||++..|+  .+...+..+.+|+.|.+.++.....+-..+++-..|+.|++++|+.+...  .-.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4667777777666  33334566777888888777666666666777777888888887766432  2245667777777


Q ss_pred             EccCCccc------------cCccEEEeccCCC----cccCccCCCCCCCCEEEccCCC-Cc-ccChhhhccCccccccc
Q 036772          259 LANETAIS------------QNLVDMSLVDCGI----TELPESLGRSPSLKFLNLAEND-FE-KIPSSIKQLSNLLFLTL  320 (583)
Q Consensus       259 ~l~~~~i~------------~~L~~L~L~~~~l----~~lp~~l~~l~~L~~L~Ls~n~-l~-~lp~~i~~l~~L~~L~L  320 (583)
                      +++-+.+.            +.|..|+|++|.-    ..+..-...+++|.+|||+.|. ++ +.-..+.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            77765543            3388888888842    2244445688999999999886 44 34445678899999999


Q ss_pred             ccccc
Q 036772          321 QNCKR  325 (583)
Q Consensus       321 ~~c~~  325 (583)
                      +.|-.
T Consensus       346 sRCY~  350 (419)
T KOG2120|consen  346 SRCYD  350 (419)
T ss_pred             hhhcC
Confidence            99954

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.04  E-value=5.4e-06  Score=62.32  Aligned_cols=58  Identities=40%  Similarity=0.556  Sum_probs=40.8

Q ss_pred             CcCEEeccCCCCccccc-cccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCC
Q 036772          183 NIENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCL  240 (583)
Q Consensus       183 ~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~  240 (583)
                      +|+.|++++|.++.+|. .+..+++|++|++++|......+..+.++++|++|++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            46666777777777774 46777888888888776655555667777777777777764

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.88  E-value=1.5e-07  Score=100.30  Aligned_cols=55  Identities=24%  Similarity=0.169  Sum_probs=35.1

Q ss_pred             CcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCC
Q 036772          183 NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGC  239 (583)
Q Consensus       183 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c  239 (583)
                      .|...+.+.|.+..+..++.-++.|+.|+|++|+....-  .+..++.|++|||+.|
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN  219 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN  219 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc
Confidence            344455566666666666667777777777776654322  4566777777777764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.82  E-value=1e-05  Score=78.14  Aligned_cols=222  Identities=21%  Similarity=0.157  Sum_probs=124.5

Q ss_pred             CccEEEecCCCCCCCCCC--C--CCCCceEEEccCCChhhhc---ccccCCCCccEEeccCCCCCCCCCCC-CCCCCcCE
Q 036772           47 ELRYFQWDGYPLKSLPSK--N--IPEHLVSLEMPHSNIEQLW---NGVQNLAALKRLNLSYCKQLSRIPDL-SLALNLEW  118 (583)
Q Consensus        47 ~Lr~L~l~~~~l~~lp~~--~--~~~~L~~L~L~~~~l~~l~---~~~~~l~~L~~L~Ls~~~~l~~~p~l-~~l~~L~~  118 (583)
                      -+..|.+.++.+.+....  +  ..+.+++|||.+|.+....   .-+.++|.|++|+|+.|+....+..+ ....+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            344666666666555432  2  5788999999999887532   33689999999999999877666555 35679999


Q ss_pred             EeeeCCCCc-hhhhhhccCCCCCCEEEccCCCCCCcCCCc---C--CCCCccEEEecCCCCcc-----cccccCCCcCEE
Q 036772          119 LDLVGCASL-IEIHSSIQHLNKLVFLNLGRCISLKSLPTG---I--NLDSLKVLYLGGCSNLK-----RFLEISCNIENL  187 (583)
Q Consensus       119 L~L~~~~~l-~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~---~--~l~~L~~L~L~~c~~l~-----~~~~~~~~L~~L  187 (583)
                      |-|.|.... ..+...+..+++++.|.++.+ .++.+-..   +  --+.+++|...+|....     .+...++++..+
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N-~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv  204 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDN-SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSV  204 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccc-hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhe
Confidence            999884322 234566778888888888774 22222111   1  13355666666654221     222233444444


Q ss_pred             eccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCC-ccccccCCCCcccEEEccCCccc
Q 036772          188 DLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLE-KLPEEIGNLESLKIMLANETAIS  266 (583)
Q Consensus       188 ~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~~~i~  266 (583)
                      .+..+.++....                      -.....++.+-.|+++.++.-. .--+.+..++.|..|.++++.+.
T Consensus       205 ~v~e~PlK~~s~----------------------ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  205 FVCEGPLKTESS----------------------EKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             eeecCcccchhh----------------------cccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            444444433221                      1112223333344444332111 11234556666666666666666


Q ss_pred             cCccEEEeccCCCcccCccCCCCCCCCEEEcc
Q 036772          267 QNLVDMSLVDCGITELPESLGRSPSLKFLNLA  298 (583)
Q Consensus       267 ~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls  298 (583)
                      +.|+.      .- ..--.++++++++.|+=+
T Consensus       263 d~l~~------~e-rr~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  263 DPLRG------GE-RRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             ccccC------Cc-ceEEEEeeccceEEecCc
Confidence            54321      00 011235778888888654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.67  E-value=2.4e-05  Score=54.27  Aligned_cols=38  Identities=37%  Similarity=0.598  Sum_probs=21.0

Q ss_pred             ccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccC
Q 036772          269 LVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIP  306 (583)
Q Consensus       269 L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp  306 (583)
                      |++|++++|+++++|..++.+++|+.|++++|.+++++
T Consensus         3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             ceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            44555555555556555666666666666666655443

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.64  E-value=8.1e-07  Score=94.85  Aligned_cols=101  Identities=32%  Similarity=0.418  Sum_probs=48.6

Q ss_pred             CCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCC-CCCcCEEeeeCCCCchhhhhhccCCCCCCEEEc
Q 036772           67 PEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSL-ALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNL  145 (583)
Q Consensus        67 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~-l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L  145 (583)
                      ++.|+.|+|++|++++.. .+..+++|++|||++|. +..+|.++. ...|+.|+|++|.. ..+ ..+.+|++|+.||+
T Consensus       186 l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~l-~tL-~gie~LksL~~LDl  261 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNAL-TTL-RGIENLKSLYGLDL  261 (1096)
T ss_pred             HHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhhheeeeecccHH-Hhh-hhHHhhhhhhccch
Confidence            455555666666555553 45556666666666653 344443321 12356666655432 221 23455566666666


Q ss_pred             cCCCCCCcCCCc---CCCCCccEEEecCCC
Q 036772          146 GRCISLKSLPTG---INLDSLKVLYLGGCS  172 (583)
Q Consensus       146 ~~c~~l~~lp~~---~~l~~L~~L~L~~c~  172 (583)
                      ++| .+......   ..+.+|+.|.|.||+
T Consensus       262 syN-ll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  262 SYN-LLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            552 22222111   134555555555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.63  E-value=5e-05  Score=52.70  Aligned_cols=42  Identities=29%  Similarity=0.491  Sum_probs=33.6

Q ss_pred             CCCCEEEccCCCCcccChhhhccCcccccccccccccccCCCC
Q 036772          290 PSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPEL  332 (583)
Q Consensus       290 ~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l  332 (583)
                      ++|++|++++|+|+++|..+++|++|+.|++++| .+++++.+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~l   42 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISPL   42 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcCC
Confidence            4789999999999999988999999999999998 56766543

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.53  E-value=3.1e-05  Score=86.40  Aligned_cols=130  Identities=26%  Similarity=0.261  Sum_probs=86.3

Q ss_pred             CCCCCEEEccCCCCCC-cCCCcC--CCCCccEEEecCCC----CcccccccCCCcCEEeccCCCCccccccccCCCCccE
Q 036772          137 LNKLVFLNLGRCISLK-SLPTGI--NLDSLKVLYLGGCS----NLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVR  209 (583)
Q Consensus       137 l~~L~~L~L~~c~~l~-~lp~~~--~l~~L~~L~L~~c~----~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~  209 (583)
                      -.+|++|++++...+. ..|..+  .+|+|+.|.+.|-.    .+..+-..+++|..||++++.++.+ ..++++++|+.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            4578888887743332 122223  58889999888732    2234456678999999999999988 56999999999


Q ss_pred             EeeeCCCCCc-cccccccCCCCCcEEEccCCCCCCcc--cc----ccCCCCcccEEEccCCcccc
Q 036772          210 LDLTNCSRLK-SVSNSLCNLKSLQYLFLSGCLKLEKL--PE----EIGNLESLKIMLANETAISQ  267 (583)
Q Consensus       210 L~L~~~~~l~-~lp~~l~~l~~L~~L~l~~c~~l~~l--p~----~l~~l~~L~~L~l~~~~i~~  267 (583)
                      |.+.+-.... ..-..+.+|++|+.||+|.-......  ..    --..+++|+.|+.+++.+.+
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            9998754432 12235678999999999985543321  11    11236677777777766554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.32  E-value=7.7e-05  Score=83.31  Aligned_cols=101  Identities=21%  Similarity=0.263  Sum_probs=56.5

Q ss_pred             CCccEEEecCCCC--CCCCCCC--CCCCceEEEccCCChhh--hcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEE
Q 036772           46 NELRYFQWDGYPL--KSLPSKN--IPEHLVSLEMPHSNIEQ--LWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWL  119 (583)
Q Consensus        46 ~~Lr~L~l~~~~l--~~lp~~~--~~~~L~~L~L~~~~l~~--l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L  119 (583)
                      .+|++|+++|...  ...|...  .+|.|+.|.+.+-.+..  +-.-..++|+|..||+|++ .++.+..++.++||+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHHHhccccHHHH
Confidence            4577777766431  1111111  46677777777654432  2233566777777777776 34444556667777777


Q ss_pred             eeeCCCCch-hhhhhccCCCCCCEEEccC
Q 036772          120 DLVGCASLI-EIHSSIQHLNKLVFLNLGR  147 (583)
Q Consensus       120 ~L~~~~~l~-~~~~~i~~l~~L~~L~L~~  147 (583)
                      .+.+-.... ..-..+.+|++|+.||++.
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~  229 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISR  229 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccc
Confidence            666533322 1123455677777777765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.31  E-value=0.00054  Score=63.02  Aligned_cols=120  Identities=19%  Similarity=0.251  Sum_probs=78.8

Q ss_pred             ccEEEecCCCCCCCCCC-CCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCC-CCCCcCEEeeeCCC
Q 036772           48 LRYFQWDGYPLKSLPSK-NIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLS-LALNLEWLDLVGCA  125 (583)
Q Consensus        48 Lr~L~l~~~~l~~lp~~-~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~-~l~~L~~L~L~~~~  125 (583)
                      =+.+++.++.+..+-.. ....+...+||++|.+..+ ..+..++.|.+|.|.+|++...-|++. .+++|..|.|.+|.
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            45666666665444332 2566788888888888777 447788888888888888777777754 45778888888865


Q ss_pred             Cchhhh--hhccCCCCCCEEEccCCCCCCcCCCc----C-CCCCccEEEecC
Q 036772          126 SLIEIH--SSIQHLNKLVFLNLGRCISLKSLPTG----I-NLDSLKVLYLGG  170 (583)
Q Consensus       126 ~l~~~~--~~i~~l~~L~~L~L~~c~~l~~lp~~----~-~l~~L~~L~L~~  170 (583)
                      . .++.  .-+..+++|++|.+-++. +......    + .+++|++||..+
T Consensus       100 i-~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  100 I-QELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             h-hhhhhcchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence            3 3322  245667788888776632 2222211    1 577777777765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.12  E-value=9.9e-05  Score=70.64  Aligned_cols=85  Identities=26%  Similarity=0.286  Sum_probs=52.6

Q ss_pred             CCCceEEEccCCChh-----hhcccccCCCCccEEeccCCCCCCC------------CCCCCCCCCcCEEeeeCCCCchh
Q 036772           67 PEHLVSLEMPHSNIE-----QLWNGVQNLAALKRLNLSYCKQLSR------------IPDLSLALNLEWLDLVGCASLIE  129 (583)
Q Consensus        67 ~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~Ls~~~~l~~------------~p~l~~l~~L~~L~L~~~~~l~~  129 (583)
                      +..+++++|++|.+.     .+...+.+-.+|+..+++.- ++..            ++.+-++|+|+..+|++|-....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            566777777777765     24445667777777777753 1211            12345677777777777655444


Q ss_pred             hh----hhccCCCCCCEEEccCCCCCCc
Q 036772          130 IH----SSIQHLNKLVFLNLGRCISLKS  153 (583)
Q Consensus       130 ~~----~~i~~l~~L~~L~L~~c~~l~~  153 (583)
                      .|    ..|.+-+.|++|.|++| .++.
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~Nn-GlGp  134 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNN-GLGP  134 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecC-CCCc
Confidence            33    34566777888888764 3443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.06  E-value=6.8e-05  Score=81.18  Aligned_cols=55  Identities=29%  Similarity=0.309  Sum_probs=24.6

Q ss_pred             cCCCCcccEEEccCCccccCccEEEeccCCCc-c-cCccCCCCCCCCEEEccCCCCc
Q 036772          249 IGNLESLKIMLANETAISQNLVDMSLVDCGIT-E-LPESLGRSPSLKFLNLAENDFE  303 (583)
Q Consensus       249 l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~-~-lp~~l~~l~~L~~L~Ls~n~l~  303 (583)
                      ...+++++.+.+....+......+.+.+|... + +........+++.|+++.+...
T Consensus       358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~  414 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLV  414 (482)
T ss_pred             HhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccc
Confidence            34455566555555553332224455555422 1 1111222233666666666533

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=0.00031  Score=68.17  Aligned_cols=61  Identities=16%  Similarity=0.231  Sum_probs=30.4

Q ss_pred             ccEEEeccCCCccc--CccCCCCCCCCEEEccCCCCcccC--hhhhccCcccccccccccccccC
Q 036772          269 LVDMSLVDCGITEL--PESLGRSPSLKFLNLAENDFEKIP--SSIKQLSNLLFLTLQNCKRLQSL  329 (583)
Q Consensus       269 L~~L~L~~~~l~~l--p~~l~~l~~L~~L~Ls~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~~l  329 (583)
                      +..+-+..|.+.+.  -.....++.+..|+|+.+++.+..  +.+..++.|+.|.+.+++-...+
T Consensus       201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            33344444444332  123445555666666666665332  23455566666666655544443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.00  E-value=2.6e-05  Score=67.08  Aligned_cols=98  Identities=17%  Similarity=0.192  Sum_probs=47.0

Q ss_pred             ccEEEecCCCCCCCCCCC----CCCCceEEEccCCChhhhcccc-cCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEee
Q 036772           48 LRYFQWDGYPLKSLPSKN----IPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDL  121 (583)
Q Consensus        48 Lr~L~l~~~~l~~lp~~~----~~~~L~~L~L~~~~l~~l~~~~-~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L  121 (583)
                      +-.++++.|++..++...    ...+|...++++|.++.+|+.+ ...+-++.|+|++|+ +.++| .+..++.|+.|++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhccc
Confidence            334445555544444321    3334445555555555555443 233455555555553 33333 3555555555555


Q ss_pred             eCCCCchhhhhhccCCCCCCEEEccC
Q 036772          122 VGCASLIEIHSSIQHLNKLVFLNLGR  147 (583)
Q Consensus       122 ~~~~~l~~~~~~i~~l~~L~~L~L~~  147 (583)
                      +.|.. ...|..+..|.+|-.|+..+
T Consensus       108 ~~N~l-~~~p~vi~~L~~l~~Lds~~  132 (177)
T KOG4579|consen  108 RFNPL-NAEPRVIAPLIKLDMLDSPE  132 (177)
T ss_pred             ccCcc-ccchHHHHHHHhHHHhcCCC
Confidence            55432 23344444466666666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.94  E-value=0.00059  Score=65.45  Aligned_cols=123  Identities=20%  Similarity=0.213  Sum_probs=70.6

Q ss_pred             ccCCCCccEEeeeCCCCCccccc----cccCCCCCcEEEccCCCCCCcccc-------------ccCCCCcccEEEccCC
Q 036772          201 IGNLSRLVRLDLTNCSRLKSVSN----SLCNLKSLQYLFLSGCLKLEKLPE-------------EIGNLESLKIMLANET  263 (583)
Q Consensus       201 i~~l~~L~~L~L~~~~~l~~lp~----~l~~l~~L~~L~l~~c~~l~~lp~-------------~l~~l~~L~~L~l~~~  263 (583)
                      +..|++|+..+|++|......|.    .+++-+.|++|.+++|..-..--.             ...+-+.|+......|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            45566666666666655444332    344556666666666543211111             1223456666666666


Q ss_pred             cccc--------------CccEEEeccCCCcc------cCccCCCCCCCCEEEccCCCCcccC-----hhhhccCccccc
Q 036772          264 AISQ--------------NLVDMSLVDCGITE------LPESLGRSPSLKFLNLAENDFEKIP-----SSIKQLSNLLFL  318 (583)
Q Consensus       264 ~i~~--------------~L~~L~L~~~~l~~------lp~~l~~l~~L~~L~Ls~n~l~~lp-----~~i~~l~~L~~L  318 (583)
                      ++..              .|+.+.+..|.+..      +-..+..+.+|+.|||..|.++...     ..+..-+.|+.|
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            5432              26667777776643      1234556788999999998877322     223344567888


Q ss_pred             ccccc
Q 036772          319 TLQNC  323 (583)
Q Consensus       319 ~L~~c  323 (583)
                      .+.+|
T Consensus       248 ~lnDC  252 (388)
T COG5238         248 RLNDC  252 (388)
T ss_pred             cccch
Confidence            88887

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.92  E-value=8.9e-05  Score=63.84  Aligned_cols=103  Identities=26%  Similarity=0.363  Sum_probs=67.6

Q ss_pred             CccEEeeeCCCCCc--cccccccCCCCCcEEEccCCCCCCccccccCC-CCcccEEEccCCccccCccEEEeccCCCccc
Q 036772          206 RLVRLDLTNCSRLK--SVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGN-LESLKIMLANETAISQNLVDMSLVDCGITEL  282 (583)
Q Consensus       206 ~L~~L~L~~~~~l~--~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~-l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~l  282 (583)
                      -+..++|++|....  ..+..+.+...|+..++++| .+..+|+.+.. .+.              ++.|++++|.++++
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t--------------~t~lNl~~neisdv   92 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPT--------------ATTLNLANNEISDV   92 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccch--------------hhhhhcchhhhhhc
Confidence            34556677765431  23334445556666677764 34445544332 223              44555555666668


Q ss_pred             CccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772          283 PESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       283 p~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c  323 (583)
                      |..+..++.|+.|+++.|.+...|..+..|.+|-.|+..++
T Consensus        93 PeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen   93 PEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             hHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence            98899999999999999999888888888888888887765

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.88  E-value=0.00015  Score=78.51  Aligned_cols=168  Identities=25%  Similarity=0.304  Sum_probs=90.9

Q ss_pred             CCCCCCEEEccCCCCCCcCC---CcCCCCCccEEEecCC-CCcc-------cccccCCCcCEEeccCCC-Cccc--cccc
Q 036772          136 HLNKLVFLNLGRCISLKSLP---TGINLDSLKVLYLGGC-SNLK-------RFLEISCNIENLDLSETA-IEEL--PSSI  201 (583)
Q Consensus       136 ~l~~L~~L~L~~c~~l~~lp---~~~~l~~L~~L~L~~c-~~l~-------~~~~~~~~L~~L~L~~~~-i~~l--p~~i  201 (583)
                      .++.|+.|.+.+|..+....   ....++.|+.|++++| ....       .+.....+|+.|+++.+. ++..  ....
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            36667777776666665522   1125677777777663 2211       122223466666666655 4421  1112


Q ss_pred             cCCCCccEEeeeCCCCCcc--ccccccCCCCCcEEEccCCCCCCc--cccccCCCCcccEEEccCCccccCccEEEeccC
Q 036772          202 GNLSRLVRLDLTNCSRLKS--VSNSLCNLKSLQYLFLSGCLKLEK--LPEEIGNLESLKIMLANETAISQNLVDMSLVDC  277 (583)
Q Consensus       202 ~~l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~l~~c~~l~~--lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~  277 (583)
                      ..+++|+.|.+.+|..++.  +-....+++.|++|++++|..+..  +.....++++|+.|.+....--..++.+.+.++
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~  345 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL  345 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence            2377888888888775322  334455678888888888877632  333344456666554443332222444444443


Q ss_pred             CCc---c-cCccCCCCCCCCEEEccCCCCc
Q 036772          278 GIT---E-LPESLGRSPSLKFLNLAENDFE  303 (583)
Q Consensus       278 ~l~---~-lp~~l~~l~~L~~L~Ls~n~l~  303 (583)
                      ...   . ..-.+..++.|+.+.+..+...
T Consensus       346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~  375 (482)
T KOG1947|consen  346 LTLTSDDLAELILRSCPKLTDLSLSYCGIS  375 (482)
T ss_pred             hccCchhHhHHHHhcCCCcchhhhhhhhcc
Confidence            221   1 2234556777777777776633

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.67  E-value=0.0026  Score=58.63  Aligned_cols=107  Identities=19%  Similarity=0.212  Sum_probs=82.8

Q ss_pred             ccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccc-cCCCCccEEeccCCCCC--CCCCCCCCCCCcC
Q 036772           41 LESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQL--SRIPDLSLALNLE  117 (583)
Q Consensus        41 l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~-~~l~~L~~L~Ls~~~~l--~~~p~l~~l~~L~  117 (583)
                      ++...+..-.+++++|.+..++....++.|.+|.+.+|.|..+...+ ..+++|+.|.|.+|.+.  .++..+..+|.|+
T Consensus        37 lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   37 LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE  116 (233)
T ss_pred             ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence            44455678889999999998887778999999999999999887765 45778999999998533  2344577889999


Q ss_pred             EEeeeCCCCchhhh---hhccCCCCCCEEEccC
Q 036772          118 WLDLVGCASLIEIH---SSIQHLNKLVFLNLGR  147 (583)
Q Consensus       118 ~L~L~~~~~l~~~~---~~i~~l~~L~~L~L~~  147 (583)
                      +|.+-+|.....-.   -.+..+++|+.||.+.
T Consensus       117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            99999876433211   1356789999999876

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.60  E-value=0.00087  Score=64.20  Aligned_cols=80  Identities=29%  Similarity=0.235  Sum_probs=39.0

Q ss_pred             CCccEEEecCCCCCCCCCCCCCCCceEEEccCCC--hh-hhcccccCCCCccEEeccCCCCC--CCCCCCCCCCCcCEEe
Q 036772           46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSN--IE-QLWNGVQNLAALKRLNLSYCKQL--SRIPDLSLALNLEWLD  120 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~--l~-~l~~~~~~l~~L~~L~Ls~~~~l--~~~p~l~~l~~L~~L~  120 (583)
                      ..|++|+..+..++++-....+++|+.|.++.|.  +. .+..-...+|+|++|+|+.|++-  ..++.+..+.||..|+
T Consensus        43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld  122 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD  122 (260)
T ss_pred             cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence            3555555555555555444455556666665552  22 22222334455556655555432  1222344445555555


Q ss_pred             eeCCC
Q 036772          121 LVGCA  125 (583)
Q Consensus       121 L~~~~  125 (583)
                      +.+|.
T Consensus       123 l~n~~  127 (260)
T KOG2739|consen  123 LFNCS  127 (260)
T ss_pred             cccCC
Confidence            55554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.59  E-value=0.0057  Score=58.71  Aligned_cols=58  Identities=26%  Similarity=0.243  Sum_probs=28.9

Q ss_pred             CCCceEEEccCCChhhhcccccCCCCccEEeccCC--CCCCCCCC-CCCCCCcCEEeeeCCC
Q 036772           67 PEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYC--KQLSRIPD-LSLALNLEWLDLVGCA  125 (583)
Q Consensus        67 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~--~~l~~~p~-l~~l~~L~~L~L~~~~  125 (583)
                      ...|+.|++.+..++.+ ..+-.+++||.|.++.|  +....++. ...+|+|++|++++|.
T Consensus        42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk  102 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK  102 (260)
T ss_pred             ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc
Confidence            34444455544444433 23445666666666666  33333332 2334666666666654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.96  E-value=0.0011  Score=63.98  Aligned_cols=58  Identities=22%  Similarity=0.140  Sum_probs=31.7

Q ss_pred             CccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhccc--ccCCCCccEEeccCCCCC
Q 036772           47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG--VQNLAALKRLNLSYCKQL  104 (583)
Q Consensus        47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~--~~~l~~L~~L~Ls~~~~l  104 (583)
                      .|++|.++-|.+++|.+...+++|++|.|+.|.|..+.+-  ++++++|++|.|..|.-.
T Consensus        42 ~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   42 LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence            5555666655555555444555556666655555544322  455555555555555433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.82  E-value=0.01  Score=34.27  Aligned_cols=20  Identities=40%  Similarity=0.780  Sum_probs=12.8

Q ss_pred             CCCEEEccCCCCcccChhhh
Q 036772          291 SLKFLNLAENDFEKIPSSIK  310 (583)
Q Consensus       291 ~L~~L~Ls~n~l~~lp~~i~  310 (583)
                      +|++|+|++|+++.+|.+++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEESEEGTTTT
T ss_pred             CccEEECCCCcCEeCChhhc
Confidence            36667777777666666544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.45  E-value=0.0014  Score=63.15  Aligned_cols=78  Identities=21%  Similarity=0.095  Sum_probs=43.4

Q ss_pred             CccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCC--CCCCCCCCCCcCEEeeeCC
Q 036772           47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLS--RIPDLSLALNLEWLDLVGC  124 (583)
Q Consensus        47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~--~~p~l~~l~~L~~L~L~~~  124 (583)
                      +.+.|+..||.+..+.-.-.++.|+.|.|+-|+|+.+ ..+..+++|+.|.|..|.+..  ++.-+.++|+|+.|-|..|
T Consensus        20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             HhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence            4566666677666654333566666666666666665 335566666666666653221  1112445555555555554


Q ss_pred             C
Q 036772          125 A  125 (583)
Q Consensus       125 ~  125 (583)
                      .
T Consensus        99 P   99 (388)
T KOG2123|consen   99 P   99 (388)
T ss_pred             C
Confidence            3

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.04  E-value=0.15  Score=44.02  Aligned_cols=12  Identities=33%  Similarity=0.448  Sum_probs=4.7

Q ss_pred             CCCCCCcCEEee
Q 036772          110 LSLALNLEWLDL  121 (583)
Q Consensus       110 l~~l~~L~~L~L  121 (583)
                      |..+++|+.+.+
T Consensus        77 F~~~~~l~~i~~   88 (129)
T PF13306_consen   77 FSNCTNLKNIDI   88 (129)
T ss_dssp             TTT-TTECEEEE
T ss_pred             cccccccccccc
Confidence            333444444444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.76  E-value=0.04  Score=29.59  Aligned_cols=16  Identities=31%  Similarity=0.698  Sum_probs=7.5

Q ss_pred             CCCEEEccCCCCcccC
Q 036772          291 SLKFLNLAENDFEKIP  306 (583)
Q Consensus       291 ~L~~L~Ls~n~l~~lp  306 (583)
                      +|+.|+|++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5666666666665554

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.33  E-value=0.27  Score=42.48  Aligned_cols=113  Identities=19%  Similarity=0.278  Sum_probs=58.5

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCC--CCCCceEEEccCCChhhhccc-ccCC
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKN--IPEHLVSLEMPHSNIEQLWNG-VQNL   90 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~l~~l~~~-~~~l   90 (583)
                      ++.+|+.+.+..       ....+......-..+|+.+.+.+. +..++...  .++.|+.+.+.+ .+..++.. +..+
T Consensus        10 ~~~~l~~i~~~~-------~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen   10 NCSNLESITFPN-------TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             T-TT--EEEETS-------T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             CCCCCCEEEECC-------CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence            677888888864       234565543333358999999874 88887653  666899999976 66666544 7789


Q ss_pred             CCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCchhhh-hhccCCCCC
Q 036772           91 AALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGCASLIEIH-SSIQHLNKL  140 (583)
Q Consensus        91 ~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L  140 (583)
                      ++|+.+++..+  ...++  .|... +|+.+.+..  ....++ ..+.++++|
T Consensus        81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL  128 (129)
T ss_dssp             TTECEEEETTT---BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred             ccccccccCcc--ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence            99999999764  33333  36676 888888775  222333 345555554

>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.25  E-value=0.074  Score=29.74  Aligned_cols=20  Identities=55%  Similarity=1.081  Sum_probs=17.8

Q ss_pred             CceEEEccCCChhhhccccc
Q 036772           69 HLVSLEMPHSNIEQLWNGVQ   88 (583)
Q Consensus        69 ~L~~L~L~~~~l~~l~~~~~   88 (583)
                      +|++|+|++++++++|++.+
T Consensus         1 ~LVeL~m~~S~lekLW~G~k   20 (20)
T PF07725_consen    1 NLVELNMPYSKLEKLWEGVK   20 (20)
T ss_pred             CcEEEECCCCChHHhcCccC
Confidence            58999999999999999753

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.95  E-value=0.055  Score=31.19  Aligned_cols=19  Identities=42%  Similarity=0.674  Sum_probs=9.7

Q ss_pred             cCEEeccCCCCcccccccc
Q 036772          184 IENLDLSETAIEELPSSIG  202 (583)
Q Consensus       184 L~~L~L~~~~i~~lp~~i~  202 (583)
                      |++|++++|.++.+|++++
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            4445555555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.13  E-value=0.09  Score=48.77  Aligned_cols=94  Identities=28%  Similarity=0.335  Sum_probs=62.6

Q ss_pred             cCCCCCCCCCCC-CCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCC--CCC-CCCCcCEEeeeCCCCch
Q 036772           54 DGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIP--DLS-LALNLEWLDLVGCASLI  128 (583)
Q Consensus        54 ~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p--~l~-~l~~L~~L~L~~~~~l~  128 (583)
                      +.+..-++|... .--.++.+|-+++.|.... +.+.+++.++.|.+.+|+...+.-  .++ -+++|+.|+|++|..++
T Consensus        86 d~~g~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT  165 (221)
T KOG3864|consen   86 DYNGYFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT  165 (221)
T ss_pred             cccceecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence            344444666554 3446889999998877432 447788888888888887776532  222 45788888888887766


Q ss_pred             hhh-hhccCCCCCCEEEccC
Q 036772          129 EIH-SSIQHLNKLVFLNLGR  147 (583)
Q Consensus       129 ~~~-~~i~~l~~L~~L~L~~  147 (583)
                      +-. ..+..+++|+.|.+.+
T Consensus       166 ~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  166 DGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             hhHHHHHHHhhhhHHHHhcC
Confidence            533 3456677777776655

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.36  E-value=0.17  Score=27.10  Aligned_cols=16  Identities=38%  Similarity=0.551  Sum_probs=7.1

Q ss_pred             CccEEEecCCCCCCCC
Q 036772           47 ELRYFQWDGYPLKSLP   62 (583)
Q Consensus        47 ~Lr~L~l~~~~l~~lp   62 (583)
                      +|+.|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666655554

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.89  E-value=0.37  Score=28.82  Aligned_cols=21  Identities=29%  Similarity=0.616  Sum_probs=17.0

Q ss_pred             CCCCCEEEccCCCCcccChhh
Q 036772          289 SPSLKFLNLAENDFEKIPSSI  309 (583)
Q Consensus       289 l~~L~~L~Ls~n~l~~lp~~i  309 (583)
                      +++|+.|+|++|.++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467889999999998888654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.89  E-value=0.37  Score=28.82  Aligned_cols=21  Identities=29%  Similarity=0.616  Sum_probs=17.0

Q ss_pred             CCCCCEEEccCCCCcccChhh
Q 036772          289 SPSLKFLNLAENDFEKIPSSI  309 (583)
Q Consensus       289 l~~L~~L~Ls~n~l~~lp~~i  309 (583)
                      +++|+.|+|++|.++.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467889999999998888654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.40  E-value=0.14  Score=47.51  Aligned_cols=62  Identities=21%  Similarity=0.286  Sum_probs=41.2

Q ss_pred             CcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC---CCCCccEEEecCCCCccc
Q 036772          115 NLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI---NLDSLKVLYLGGCSNLKR  176 (583)
Q Consensus       115 ~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~---~l~~L~~L~L~~c~~l~~  176 (583)
                      .++.++-+++....+--+.+..+++++.|.+.+|..+.+.--..   -.++|+.|++++|..++.
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~  166 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD  166 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence            45667777766555555667777778888887777766432111   467788888888876653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.93  E-value=0.027  Score=53.17  Aligned_cols=82  Identities=10%  Similarity=0.016  Sum_probs=48.7

Q ss_pred             CCccEEEecCCCCCCCCCCC-CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCC
Q 036772           46 NELRYFQWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGC  124 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~  124 (583)
                      ...+.||++.+.+..+...| -++.|+.|+++.|.+..+|+.++.+..++.+++..|......-.+...+.++++++.++
T Consensus        42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~  121 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT  121 (326)
T ss_pred             ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence            45566666666665555555 45566666666666666666666666666666655533322225666666666666665


Q ss_pred             CCc
Q 036772          125 ASL  127 (583)
Q Consensus       125 ~~l  127 (583)
                      ...
T Consensus       122 ~~~  124 (326)
T KOG0473|consen  122 EFF  124 (326)
T ss_pred             cch
Confidence            533

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=83.53  E-value=0.016  Score=62.29  Aligned_cols=80  Identities=23%  Similarity=0.277  Sum_probs=39.6

Q ss_pred             ceEEEccCCChhh-----hcccccCCCCccEEeccCCCCCCCCC-----CCCCC-CCcCEEeeeCCCCch----hhhhhc
Q 036772           70 LVSLEMPHSNIEQ-----LWNGVQNLAALKRLNLSYCKQLSRIP-----DLSLA-LNLEWLDLVGCASLI----EIHSSI  134 (583)
Q Consensus        70 L~~L~L~~~~l~~-----l~~~~~~l~~L~~L~Ls~~~~l~~~p-----~l~~l-~~L~~L~L~~~~~l~----~~~~~i  134 (583)
                      +..|.|.+|.+..     +-..+...+.|..|++++|.....-.     .+... ..|++|++..|....    .+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            5556666655542     33345566666666666665442110     11221 345555555554332    233444


Q ss_pred             cCCCCCCEEEccCCC
Q 036772          135 QHLNKLVFLNLGRCI  149 (583)
Q Consensus       135 ~~l~~L~~L~L~~c~  149 (583)
                      .....++.++++.|.
T Consensus       169 ~~~~~l~~l~l~~n~  183 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNG  183 (478)
T ss_pred             hcccchhHHHHHhcc
Confidence            455566666665543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	583
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		4e-06
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		1e-04

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 97/222 (43%), Gaps = 22/222 (9%)
Query: 58  LKSLPSKNIPE------HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLS 111
           L+S+P    P+      HL    +  + + +L +  Q  A L+ L L+    L  +P   
Sbjct: 88  LRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASI 146
Query: 112 LALN-LEWLDLVGCASLIEIHSSI---------QHLNKLVFLNLGRCISLKSLPTGI-NL 160
            +LN L  L +  C  L E+   +         Q L  L  L L     ++SLP  I NL
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL-EWTGIRSLPASIANL 205
Query: 161 DSLKVLYLGGC--SNLKRFLEISCNIENLDLSE-TAIEELPSSIGNLSRLVRLDLTNCSR 217
            +LK L +     S L   +     +E LDL   TA+   P   G  + L RL L +CS 
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265
Query: 218 LKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIML 259
           L ++   +  L  L+ L L GC+ L +LP  I  L +  I+L
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 76/184 (41%), Gaps = 21/184 (11%)
Query: 169 GGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCN- 227
            G   L    +    +E L L+   +  LP+SI +L+RL  L +  C  L  +   L + 
Sbjct: 114 AGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAST 173
Query: 228 --------LKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ---------NLV 270
                   L +LQ L L     +  LP  I NL++LK +    + +S           L 
Sbjct: 174 DASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232
Query: 271 DMSLVDC-GITELPESLGRSPSLKFLNLAE-NDFEKIPSSIKQLSNLLFLTLQNCKRLQS 328
           ++ L  C  +   P   G    LK L L + ++   +P  I +L+ L  L L+ C  L  
Sbjct: 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292
Query: 329 LPEL 332
           LP L
Sbjct: 293 LPSL 296

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	583
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-50
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-43
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-29
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-23
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-30
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-28
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-26
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-10
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-20
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-17
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-17
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-18
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-18
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-15
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-12
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-12
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-12
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-06
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	9e-06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	7e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  174 bits (444), Expect = 6e-50
 Identities = 72/294 (24%), Positives = 111/294 (37%), Gaps = 32/294 (10%)

Query: 46  NELRYFQWDGYPLKSLPS---KNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCK 102
           N  +     G  LK+             V+LE+    + Q  +    L+ L+ + +    
Sbjct: 56  NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA- 114

Query: 103 QLSRIPD-LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLD 161
            L  +PD +     LE L L     L  + +SI  LN+L  L++  C  L  LP  +   
Sbjct: 115 GLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 162 SLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSV 221
                   G  NL          ++L L  T I  LP+SI NL  L  L + N   L ++
Sbjct: 174 DASGE-HQGLVNL----------QSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSAL 221

Query: 222 SNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITE 281
             ++ +L  L+ L L GC  L   P   G    LK +          L D S     +  
Sbjct: 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL---------ILKDCS----NLLT 268

Query: 282 LPESLGRSPSLKFLNLAEN-DFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPC 334
           LP  + R   L+ L+L    +  ++PS I QL     + +    + Q     P 
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPV 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  157 bits (399), Expect = 1e-43
 Identities = 48/265 (18%), Positives = 85/265 (32%), Gaps = 43/265 (16%)

Query: 115 NLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNL 174
             E L   G  +L   H  +    +    +  R  S        N ++ ++        L
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA---NSNNPQIETR-TGRAL 68

Query: 175 KRFLEI-----SCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLK 229
           K   ++           L+L    + + P     LS L  + + + + L  + +++    
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTI-DAAGLMELPDTMQQFA 127

Query: 230 SLQYLFLSGCLKLEKLPEEIGNLESLKI-------------------MLANETAISQNLV 270
            L+ L L+    L  LP  I +L  L+                      + E     NL 
Sbjct: 128 GLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ 186

Query: 271 DMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLP 330
            + L   GI  LP S+    +LK L +  +    +  +I  L  L  L L+ C  L++ P
Sbjct: 187 SLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP 246

Query: 331 ELPCGSNIFARYCTSLETLSNLSTL 355
                              + L  L
Sbjct: 247 P-------------IFGGRAPLKRL 258

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  131 bits (331), Expect = 4e-34
 Identities = 43/247 (17%), Positives = 83/247 (33%), Gaps = 39/247 (15%)

Query: 131 HSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDL 189
           H    H +    L      +L+     +               +  R    + N +    
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-NPQIETR 63

Query: 190 SETAIEELPSSIGNLSR--LVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPE 247
           +  A++     + + ++   V L+L +   L    +    L  LQ++ +     L +LP+
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLMELPD 121

Query: 248 EIGNLESLKIMLANETAIS---------QNLVDMSLVDC-GITELPESLGRSP------- 290
            +     L+ +      +            L ++S+  C  +TELPE L  +        
Sbjct: 122 TMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 291 --SLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLET 348
             +L+ L L       +P+SI  L NL  L ++N   L +L               ++  
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGP-------------AIHH 227

Query: 349 LSNLSTL 355
           L  L  L
Sbjct: 228 LPKLEEL 234

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  119 bits (300), Expect = 6e-30
 Identities = 39/206 (18%), Positives = 80/206 (38%), Gaps = 22/206 (10%)

Query: 159 NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRL 218
           +    + LY  G + L+ + ++    +    ++           N +   +++      L
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNP-QIETRTGRAL 68

Query: 219 KSVSNSL--CNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVD 276
           K+ ++ L          L L     L + P++   L  L+ M              ++  
Sbjct: 69  KATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHM--------------TIDA 113

Query: 277 CGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGS 336
            G+ ELP+++ +   L+ L LA N    +P+SI  L+ L  L+++ C  L  LPE    +
Sbjct: 114 AGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 337 NIFARYCTSLETLSNLSTLFTRSSEL 362
           +         + L NL +L    + +
Sbjct: 174 DA----SGEHQGLVNLQSLRLEWTGI 195

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.9 bits (229), Expect = 2e-20
 Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 21/169 (12%)

Query: 194 IEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPE------ 247
           +        + S    L     + L+   + L   +       +      +         
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 248 EIGNLESLKIMLAN-ETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIP 306
           E     +LK      E A     V + L    + + P+   R   L+ + +      ++P
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELP 120

Query: 307 SSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTL 355
            +++Q + L  LTL     L++LP              S+ +L+ L  L
Sbjct: 121 DTMQQFAGLETLTLARNP-LRALPA-------------SIASLNRLREL 155

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  123 bits (311), Expect = 1e-30
 Identities = 75/341 (21%), Positives = 135/341 (39%), Gaps = 61/341 (17%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCK--------------- 102
           L SLP   +P HL SL    +++ +L    Q+L +L   N +                  
Sbjct: 83  LSSLPE--LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSN 140

Query: 103 -QLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLD 161
            QL ++P+L  +  L+ +D+    SL ++      L  +     G    L+ LP   NL 
Sbjct: 141 NQLEKLPELQNSSFLKIIDVDNN-SLKKLPDLPPSLEFI---AAGNN-QLEELPELQNLP 195

Query: 162 SLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSV 221
            L  +Y     +LK+  ++  ++E++      +EELP  + NL  L  +   N   LK++
Sbjct: 196 FLTAIYADNN-SLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNN-LLKTL 252

Query: 222 SNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ---NLVDMSLVDCG 278
            +   +L++L          L  LPE   +L  L +     + +S+   NL  ++     
Sbjct: 253 PDLPPSLEALNVRDN----YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNE 308

Query: 279 ITELPESLGRSPSLKFLNLAENDFEKIPSSIKQL-----------------SNLLFLTLQ 321
           I  L +     PSL+ LN++ N   ++P+   +L                  NL  L ++
Sbjct: 309 IRSLCDLP---PSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVE 365

Query: 322 NCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSEL 362
               L+  P++P            L   S+L+ +      L
Sbjct: 366 YN-PLREFPDIPES-------VEDLRMNSHLAEVPELPQNL 398

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  110 bits (278), Expect = 3e-26
 Identities = 61/306 (19%), Positives = 111/306 (36%), Gaps = 49/306 (16%)

Query: 41  LESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSY 100
           L      L Y       L+ LP       L  +++ ++++++L +   +L   + +    
Sbjct: 126 LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL---EFIAAGN 182

Query: 101 CKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINL 160
             QL  +P+L     L  +          +         L  +  G    L+ LP   NL
Sbjct: 183 N-QLEELPELQNLPFLTAIYADNN----SLKKLPDLPLSLESIVAGNN-ILEELPELQNL 236

Query: 161 DSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDL-------- 212
             L  +Y      LK   ++  ++E L++ +  + +LP    +L+ L   +         
Sbjct: 237 PFLTTIYADNN-LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSEL 295

Query: 213 -TNCSRLKSVSNSLCNL----KSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ 267
             N   L + SN + +L     SL+ L +S   KL +LP     LE L            
Sbjct: 296 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPALPPRLERL------------ 342

Query: 268 NLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQ 327
                      + E+PE      +LK L++  N   + P   + + +     L+    L 
Sbjct: 343 -----IASFNHLAEVPELPQ---NLKQLHVEYNPLREFPDIPESVED-----LRMNSHLA 389

Query: 328 SLPELP 333
            +PELP
Sbjct: 390 EVPELP 395

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 99.7 bits (249), Expect = 2e-22
 Identities = 56/270 (20%), Positives = 99/270 (36%), Gaps = 28/270 (10%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLE 117
           LK LP    P  L S+   ++ +E+L   +QNL  L  +       L  +PDL    +LE
Sbjct: 207 LKKLPDL--PLSLESIVAGNNILEEL-PELQNLPFLTTIYADNN-LLKTLPDL--PPSLE 260

Query: 118 WLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRF 177
            L++     L ++    Q L  L             L       +L  L       ++  
Sbjct: 261 ALNVRDN-YLTDLPELPQSLTFLDVSEN----IFSGLSE--LPPNLYYLNASSN-EIRSL 312

Query: 178 LEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLS 237
            ++  ++E L++S   + ELP+    L RL     +    L  V     NLK L    + 
Sbjct: 313 CDLPPSLEELNVSNNKLIELPALPPRLERL---IASFN-HLAEVPELPQNLKQL---HVE 365

Query: 238 GCLKLEKLPEEIGNLESLKI--MLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFL 295
               L + P+   ++E L++   LA    + QNL  + +    + E P+      S++ L
Sbjct: 366 YN-PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE---SVEDL 421

Query: 296 NLAENDFEKIPSSIKQ-LSNLLFLTLQNCK 324
            +             +    L     ++  
Sbjct: 422 RMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 98.9 bits (247), Expect = 3e-22
 Identities = 52/315 (16%), Positives = 98/315 (31%), Gaps = 47/315 (14%)

Query: 97  NLSYCKQLSRIPD-LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLP 155
            L +   L+ +P       +                       ++    L  C+      
Sbjct: 16  PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR---- 71

Query: 156 TGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNC 215
                     L L     L    E+  ++E+L  S  ++ ELP    +L  L+  +  N 
Sbjct: 72  ------QAHELELNNL-GLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNN-NL 123

Query: 216 SRLKSVSNSL----------------CNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIML 259
             L  +   L                 N   L+ + +     L+KLP+   +LE +    
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIAAGN 182

Query: 260 ANETAIS-----QNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSN 314
                +        L  +   +  + +LP+      SL+ +    N  E++P  ++ L  
Sbjct: 183 NQLEELPELQNLPFLTAIYADNNSLKKLPDLPL---SLESIVAGNNILEELP-ELQNLPF 238

Query: 315 LLFLTLQNCKRLQSLPELPCG-------SNIFARYCTSLETLSNLSTLFTRSSELWQAFD 367
           L  +   N   L++LP+LP          N         ++L+ L       S L +   
Sbjct: 239 LTTIYADNN-LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 297

Query: 368 FCNCFKLNRNEIGEI 382
                  + NEI  +
Sbjct: 298 NLYYLNASSNEIRSL 312

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 78.1 bits (193), Expect = 1e-15
 Identities = 39/196 (19%), Positives = 71/196 (36%), Gaps = 31/196 (15%)

Query: 182 CNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCL- 240
             ++      + + E+P    N+              ++        + +    L  CL 
Sbjct: 11  TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 241 -----------KLEKLPEEIGNLESLKIMLANETAISQ---NLVDMSLVDCGITELPESL 286
                       L  LPE   +LESL     + T + +   +L  + + +  +  L +  
Sbjct: 71  RQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP 130

Query: 287 GRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELP-------CGSNIF 339
              P L++L ++ N  EK+P  ++  S L  + + N   L+ LP+LP        G+N  
Sbjct: 131 ---PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQL 185

Query: 340 ARYCTSLETLSNLSTL 355
                 L  L NL  L
Sbjct: 186 ----EELPELQNLPFL 197

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 46/237 (19%), Positives = 76/237 (32%), Gaps = 38/237 (16%)

Query: 48  LRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRI 107
           L     D   LK+LP  ++P  L +L +  + +  L    Q+L  L           S +
Sbjct: 239 LTTIYADNNLLKTLP--DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN----IFSGL 292

Query: 108 PDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLY 167
               L  NL +L+        EI S       L  LN+     L  LP       L+ L 
Sbjct: 293 S--ELPPNLYYLNASSN----EIRSLCDLPPSLEELNVSNN-KLIELPALP--PRLERLI 343

Query: 168 LGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCN 227
                +L    E+  N++ L +    + E P    ++      DL   S L  V     N
Sbjct: 344 ASFN-HLAEVPELPQNLKQLHVEYNPLREFPDIPESVE-----DLRMNSHLAEVPELPQN 397

Query: 228 LK-----------------SLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ 267
           LK                 S++ L ++    ++         + L+  +        
Sbjct: 398 LKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHHH 454

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 36/200 (18%), Positives = 65/200 (32%), Gaps = 20/200 (10%)

Query: 41  LESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSY 100
           L      L +          L    +P +L  L    + I  L        +L+ LN+S 
Sbjct: 272 LPELPQSLTFLDVSENIFSGLSE--LPPNLYYLNASSNEIRSL---CDLPPSLEELNVSN 326

Query: 101 CKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINL 160
             +L  +P L     LE L       L E+    Q+L +L          L+  P     
Sbjct: 327 N-KLIELPALPP--RLERLIASFN-HLAEVPELPQNLKQLHVEYN----PLREFPDIPE- 377

Query: 161 DSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKS 220
            S++ L +   S+L    E+  N++ L +    + E P    ++     L + +   +  
Sbjct: 378 -SVEDLRM--NSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE---DLRMNSERVVDP 431

Query: 221 VSNSLCNLKSLQYLFLSGCL 240
              +      L+        
Sbjct: 432 YEFAHETTDKLEDDVFEHHH 451

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  123 bits (312), Expect = 5e-30
 Identities = 42/301 (13%), Positives = 98/301 (32%), Gaps = 35/301 (11%)

Query: 78  SNIEQLWNGVQNLAALKRLNLSYC----KQLSRIPDLSLALNLEWLDLVGCASLIEIHSS 133
           +       G+    + ++            +   P      +L    +        I  S
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF-SDLIKDCINSDPQQKSIKKS 178

Query: 134 IQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSET 192
            +   K   +      ++  +   +  L  L+  Y+G    +   +  +   EN + ++ 
Sbjct: 179 SRITLKDTQIGQLSN-NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237

Query: 193 AIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGC--LKLEKLPEEIG 250
             +       NL  L  +++ NC  L  +   L  L  +Q + ++    +  E+L ++  
Sbjct: 238 -YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQ 296

Query: 251 NLESLKIM---------------LANETAISQ--NLVDMSLVDCGITELPESLGRSPSLK 293
            L    +                   ET++ +   L  +  +   +     + G    L 
Sbjct: 297 ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLA 356

Query: 294 FLNLAENDFEKIPSSI-KQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNL 352
            LNLA N   +IP++       +  L+  + K L+ +P         A+  + +  + + 
Sbjct: 357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPN-----IFDAKSVSVMSAI-DF 409

Query: 353 S 353
           S
Sbjct: 410 S 410

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  107 bits (268), Expect = 2e-24
 Identities = 52/307 (16%), Positives = 96/307 (31%), Gaps = 38/307 (12%)

Query: 69  HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP---DLSLALNLEWLDLVGCA 125
             +S E    + + L         ++ + + Y   L   P    L     L  L+ +   
Sbjct: 284 RGISGEQLKDDWQAL-ADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYN- 340

Query: 126 SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGC--SNLKRFLEIS 181
            L     +     KL  LNL     +  +P       + ++ L         +    +  
Sbjct: 341 QLEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399

Query: 182 C--NIENLDLS--------ETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSL 231
               +  +D S            + L  +      +  ++L+N    K           L
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459

Query: 232 QYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRS-- 289
             + L G   L ++P+     E+           +  L  + L    +T+L +    +  
Sbjct: 460 SSINLMGN-MLTEIPKNSLKDENENF------KNTYLLTSIDLRFNKLTKLSDDFRATTL 512

Query: 290 PSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQS---LPELPCGSNIFARYCTSL 346
           P L  ++L+ N F K P+     S L    ++N +  Q    L E P    I    C SL
Sbjct: 513 PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP--EGIT--LCPSL 568

Query: 347 ETLSNLS 353
             L  + 
Sbjct: 569 TQL-QIG 574

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.7 bits (249), Expect = 4e-22
 Identities = 47/296 (15%), Positives = 95/296 (32%), Gaps = 52/296 (17%)

Query: 69  HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPD--LSLALNLEWLDLVGCA- 125
            L  LE  ++ +E       +   L  LNL+Y  Q++ IP         +E L       
Sbjct: 331 KLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKL 389

Query: 126 SLIEIHSSIQHLNKLVFLNLGR-------CISLKSLPTGI-NLDSLKVLYL--------- 168
             I      + ++ +  ++            +   L        ++  + L         
Sbjct: 390 KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP 449

Query: 169 ----GGCSNLKRFLEISCNIENL-DLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSN 223
                  S L   + +  N   L ++ + ++++   +  N   L  +DL    +L  +S+
Sbjct: 450 KELFSTGSPL-SSINLMGN--MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSD 505

Query: 224 SL--CNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIM-LANETAISQN------------ 268
                 L  L  + LS      K P +  N  +LK   + N+     N            
Sbjct: 506 DFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564

Query: 269 ---LVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIP-SSIKQLSNLLFLTL 320
              L  + +    I ++ E +   P++  L++ +N    I  S +          L
Sbjct: 565 CPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYML 618

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 98.6 bits (246), Expect = 9e-22
 Identities = 39/232 (16%), Positives = 82/232 (35%), Gaps = 20/232 (8%)

Query: 115 NLEWLDLVGCASLIEIHSSIQHLNKLVFLNLG----RCISLKSLPTGI-NLDSLKVLYLG 169
            +  L L G  +   +  +I  L +L  L LG    +       P GI    S +     
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 170 GCSNLKRFLEISCNIENLDLSETAIE------ELPSSIGNLSRLVRLDLTNCSRLKSVSN 223
                K F++     +  DL +  I        +  S     +  ++   + + +  VS 
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLS-NNITFVSK 200

Query: 224 SLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAIS-----QNLVDMSLVDCG 278
           ++  L  L+  ++     + +   E    E+ +     +T        ++L D+ + +C 
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260

Query: 279 -ITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSL 329
            +T+LP  L   P ++ +N+A N              L        +++Q +
Sbjct: 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL--ADAPVGEKIQII 310

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.7 bits (184), Expect = 3e-14
 Identities = 23/180 (12%), Positives = 53/180 (29%), Gaps = 25/180 (13%)

Query: 200 SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSG----CLKLEKLPEEIGNLESL 255
           S+ +  R+  L L        V +++  L  L+ L L        +    P+ I    S 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 256 KIMLANETAIS------------QNLVDMSLVDC-GITELPESLGRSPSLKFLNLAENDF 302
           +                       +L+   +        + +S   +     +    N+ 
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 303 EKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLET-------LSNLSTL 355
             +  ++ +L+ L    + N     +        N  + Y    +T       L +L+ +
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.4 bits (147), Expect = 8e-10
 Identities = 32/172 (18%), Positives = 56/172 (32%), Gaps = 26/172 (15%)

Query: 88  QNLAALKRLNLSYCKQLSRIPDLSLAL---------NLEWLDLVGCASLIEIHSSIQ--H 136
              + L  +NL     L+ IP  SL            L  +DL     L ++    +   
Sbjct: 454 STGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATT 511

Query: 137 LNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLK--RFLEI------SC-NIEN 186
           L  LV ++L    S    PT   N  +LK   +    + +  R L         C ++  
Sbjct: 512 LPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

Query: 187 LDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSG 238
           L +    I ++   I     +  LD+ +   +    + +C         L  
Sbjct: 571 LQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFY 620

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  119 bits (301), Expect = 2e-28
 Identities = 52/383 (13%), Positives = 108/383 (28%), Gaps = 73/383 (19%)

Query: 69  HLVSLEMPHSNIE-QLWNGVQNLAALKRLNLSYCKQLSRIPD------------------ 109
            +  L +     + ++ + +  L  LK L+       +                      
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGDEELTPDMSEERKHR 382

Query: 110 ---------LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCI------SLKSL 154
                    L     L   DL+     I  +  ++ + K   ++L           +  +
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQ--DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440

Query: 155 PTGI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLT 213
              I  L  L+++Y                 +         E    S  NL  L  ++L 
Sbjct: 441 SKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY 499

Query: 214 NCSRLKSVSNSLCNLKSLQYLFLSG---------CLKLEKLPEEIGNLESLKIM------ 258
           NC  +  + + L +L  LQ L ++               +L ++      ++I       
Sbjct: 500 NCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN 559

Query: 259 ---LANETAISQ--NLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSI-KQL 312
                   ++ +   L  +  V   +  L    G +  L  L L  N  E+IP       
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFT 618

Query: 313 SNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLS----NLSTLFTRSSELWQAFDF 368
             +  L   + K L+ +P +       A+    + ++      + +     S     +  
Sbjct: 619 DQVEGLGFSHNK-LKYIPNI-----FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672

Query: 369 CNCFKLN--RNEIGEIVDGALKK 389
            N   +    NEI +        
Sbjct: 673 INASTVTLSYNEIQKFPTELFAT 695

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  110 bits (277), Expect = 2e-25
 Identities = 44/305 (14%), Positives = 91/305 (29%), Gaps = 36/305 (11%)

Query: 69  HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPD---LSLALNLEWLDLVGCA 125
             +S     ++  +L +       ++   + Y   L   P    L   + L  LD V   
Sbjct: 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHN- 583

Query: 126 SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGC--SNLKRFLEIS 181
            +  +  +     KL  L L     ++ +P       D ++ L         +       
Sbjct: 584 KVRHL-EAFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK 641

Query: 182 C--NIENLDLSETAIEELPSSIG------NLSRLVRLDLTNCSRLKSVSNSLCNLKSLQY 233
               + ++D S   I     +I              + L+     K  +        +  
Sbjct: 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701

Query: 234 LFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRS--PS 291
           + LS    +  +PE     +            +  L  + L    +T L +    +  P 
Sbjct: 702 IILSNN-LMTSIPENSLKPKDGNY------KNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754

Query: 292 LKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQS---LPELPCGSNIFARYCTSLET 348
           L  ++++ N F   P+     S L    +++ +  +    L + P         C SL  
Sbjct: 755 LSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP---TGITT-CPSLIQ 810

Query: 349 LSNLS 353
           L  + 
Sbjct: 811 L-QIG 814

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.4 bits (245), Expect = 1e-21
 Identities = 49/312 (15%), Positives = 100/312 (32%), Gaps = 57/312 (18%)

Query: 58  LKSLPSKNIPEHLVSLE---MPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPD--LSL 112
           L+  P+    + +V L      H+ +  L         L  L L Y  Q+  IP+   + 
Sbjct: 560 LEEFPASASLQKMVKLGLLDCVHNKVRHL-EAFGTNVKLTDLKLDYN-QIEEIPEDFCAF 617

Query: 113 ALNLEWLDLVGCA-SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-------NLDSLK 164
              +E L         I    + + +  +  ++      + S    I          +  
Sbjct: 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMDDYKGINAS 676

Query: 165 VLYL-------------GGCSNLKRFLEISCNIENL-DLSETAIEELPSSIGNLSRLVRL 210
            + L                S +   + +S N   +  + E +++    +  N   L  +
Sbjct: 677 TVTLSYNEIQKFPTELFATGSPI-STIILSNN--LMTSIPENSLKPKDGNYKNTYLLTTI 733

Query: 211 DLTNCSRLKSVSNSL--CNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAIS-- 266
           DL    +L S+S+      L  L  + +S        P +  N   LK         +  
Sbjct: 734 DLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEG 791

Query: 267 --------------QNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIP--SSIK 310
                          +L+ + +    I ++ E L  +P L  L++A+N    I   S   
Sbjct: 792 NRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCP 849

Query: 311 QLSNLLFLTLQN 322
            +   +++ L +
Sbjct: 850 YIEAGMYVLLYD 861

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 71.4 bits (175), Expect = 4e-13
 Identities = 30/182 (16%), Positives = 49/182 (26%), Gaps = 26/182 (14%)

Query: 197 LPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLK 256
               + N  R+  L L        V +++  L  L+ L               G+ E   
Sbjct: 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGDEELTP 373

Query: 257 IMLANET------------AISQNLVDMSLVDCGITELPESLGRSPSLKFLNLA------ 298
            M                    Q L    L+   I   PE +        ++L       
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE-MKPIKKDSRISLKDTQIGN 432

Query: 299 -ENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLE----TLSNLS 353
             N    I  +I++L+ L  +   N              +  + Y    E    + SNL 
Sbjct: 433 LTNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491

Query: 354 TL 355
            L
Sbjct: 492 DL 493

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  118 bits (297), Expect = 3e-28
 Identities = 63/330 (19%), Positives = 113/330 (34%), Gaps = 30/330 (9%)

Query: 42  ESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYC 101
           +     +         L SLP+  +P  L +LE+  + +  L      L  L   +    
Sbjct: 57  DCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLT 114

Query: 102 KQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLD 161
             L  +P       L  L + G   L  +      L +L   +      L SLP      
Sbjct: 115 -HLPALPS-----GLCKLWIFGN-QLTSLPVLPPGLQELSVSDN----QLASLPALP--S 161

Query: 162 SLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSV 221
            L  L+      L     +   ++ L +S+  +  LP+    L +L   +     RL S+
Sbjct: 162 ELCKLWAYNN-QLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN----RLTSL 216

Query: 222 SNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAIS---QNLVDMSLVDCG 278
                 LK L    +SG  +L  LP     L+ L +     T++      L+ +S+    
Sbjct: 217 PALPSGLKELI---VSGN-RLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQ 272

Query: 279 ITELPESLGRSPSLKFLNLAENDFEKIPSSI-KQLSNLLFLTLQNCKRLQSLPELPCGSN 337
           +T LPESL    S   +NL  N   +      +++++    +    +   +    P    
Sbjct: 273 LTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAP--RE 330

Query: 338 IFARYCTSLETLSNLSTLFTRSSELWQAFD 367
             A +  + + L          ++ W  F 
Sbjct: 331 TRALHLAAADWLVPAREGEPAPADRWHMFG 360

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  114 bits (287), Expect = 5e-28
 Identities = 65/307 (21%), Positives = 128/307 (41%), Gaps = 31/307 (10%)

Query: 68  EHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASL 127
              +   +  +++  +    + L ++ +L ++   +++ I  +    NLE+L+L G    
Sbjct: 22  AEGIRAVLQKASVTDV-VTQEELESITKLVVAGE-KVASIQGIEYLTNLEYLNLNGN--Q 77

Query: 128 IEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISC--NIE 185
           I   S + +L KL  L +G    +  +    NL +L+ LYL    N+     ++    + 
Sbjct: 78  ITDISPLSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNED-NISDISPLANLTKMY 135

Query: 186 NLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKL 245
           +L+L         S + N++ L  L +T   ++K V+  + NL  L  L L+   ++E +
Sbjct: 136 SLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP-IANLTDLYSLSLNYN-QIEDI 192

Query: 246 PEEIGNLESLKIMLANETAIS--------QNLVDMSLVDCGITELPESLGRSPSLKFLNL 297
              + +L SL    A    I+          L  + + +  IT+L   L     L +L +
Sbjct: 193 -SPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS-PLANLSQLTWLEI 250

Query: 298 AENDFEKIPSSIKQLSNLLFLTLQNCK--------RLQSLPELPCGSN-IFARYCTSLET 348
             N    I  ++K L+ L  L + + +         L  L  L   +N +       +  
Sbjct: 251 GTNQISDIN-AVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 349 LSNLSTL 355
           L+NL+TL
Sbjct: 310 LTNLTTL 316

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 94.1 bits (235), Expect = 4e-21
 Identities = 49/258 (18%), Positives = 99/258 (38%), Gaps = 26/258 (10%)

Query: 69  HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLI 128
           +L  L +   NI  + + + NL  +  LNL     LS +  LS    L +L +      +
Sbjct: 111 NLRELYLNEDNISDI-SPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK--V 167

Query: 129 EIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISC--NIEN 186
           +  + I +L  L  L+L     ++ +    +L SL          +     ++    + +
Sbjct: 168 KDVTPIANLTDLYSLSLNYN-QIEDISPLASLTSLHYFTAYVN-QITDITPVANMTRLNS 225

Query: 187 LDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLP 246
           L +    I +L   + NLS+L  L++    ++  ++ ++ +L  L+ L +    ++  + 
Sbjct: 226 LKIGNNKITDLS-PLANLSQLTWLEIGTN-QISDIN-AVKDLTKLKMLNVGSN-QISDIS 281

Query: 247 EEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIP 306
             + NL  L  +  N   +               E  E +G   +L  L L++N    I 
Sbjct: 282 -VLNNLSQLNSLFLNNNQLG-------------NEDMEVIGGLTNLTTLFLSQNHITDIR 327

Query: 307 SSIKQLSNLLFLTLQNCK 324
             +  LS +      N  
Sbjct: 328 -PLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 82.6 bits (205), Expect = 3e-17
 Identities = 43/223 (19%), Positives = 81/223 (36%), Gaps = 42/223 (18%)

Query: 150 SLKSLPTGI-------NLDSLKVLYLGGCSNLKRFLEISC--NIENLDLSETAIEELPSS 200
           +L +LP  I       +L       L    ++   +      +I  L ++   +  +   
Sbjct: 4   TLATLPAPINQIFPDADLAEGIRAVLQKA-SVTDVVTQEELESITKLVVAGEKVASIQG- 61

Query: 201 IGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLA 260
           I  L+ L  L+L    ++  +S  L NL  L  L++    K+  +   + NL        
Sbjct: 62  IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTN-KITDISA-LQNL-------- 109

Query: 261 NETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTL 320
                  NL ++ L +  I+++   L     +  LNL  N      S +  ++ L +LT+
Sbjct: 110 ------TNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV 162

Query: 321 QNCK--------RLQSLPELPCGSNIFARYCTSLETLSNLSTL 355
              K         L  L  L    N        +  L++L++L
Sbjct: 163 TESKVKDVTPIANLTDLYSLSLNYNQI----EDISPLASLTSL 201

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 79.5 bits (197), Expect = 3e-16
 Identities = 43/235 (18%), Positives = 81/235 (34%), Gaps = 38/235 (16%)

Query: 57  PLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNL 116
           PL +L        + SL +  ++     + + N+  L  L ++   ++  +  ++   +L
Sbjct: 127 PLANLTK------MYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTPIANLTDL 179

Query: 117 EWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYL-------- 168
             L L      IE  S +  L  L +        +  +    N+  L  L +        
Sbjct: 180 YSLSLNYN--QIEDISPLASLTSLHYFTAYVN-QITDITPVANMTRLNSLKIGNNKITDL 236

Query: 169 ---GGCSNLKRFLEISCN-------------IENLDLSETAIEELPSSIGNLSRLVRLDL 212
                 S L   LEI  N             ++ L++    I ++ S + NLS+L  L L
Sbjct: 237 SPLANLSQLTW-LEIGTNQISDINAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFL 294

Query: 213 TNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ 267
            N          +  L +L  LFLS    +  +   + +L  +         I +
Sbjct: 295 NNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIR-PLASLSKMDSADFANQVIKK 347

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  113 bits (284), Expect = 2e-26
 Identities = 58/284 (20%), Positives = 111/284 (39%), Gaps = 33/284 (11%)

Query: 69  HLVSLEMPHSNIEQLWNGV----QNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGC 124
            + S+++    +   ++ V     +L  L+ L LS       +     + +L  LDL   
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110

Query: 125 --ASLIEIHSSIQHLNKLVFLNLGRC-ISLK-SLPTGINLDSLKVLYLGGC-------SN 173
             +  +   +S+   + L FLN+    +     +  G+ L+SL+VL L            
Sbjct: 111 SLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170

Query: 174 LKRFLEISCNIENLDLSETAIE-ELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQ 232
                     +++L +S   I  ++   +     L  LD+++ +   +    L +  +LQ
Sbjct: 171 WVLSDGCG-ELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNN-FSTGIPFLGDCSALQ 226

Query: 233 YLFLSGCLKLE-KLPEEIGNLESLKIMLANETAIS--------QNLVDMSLVDCGIT-EL 282
           +L +SG  KL       I     LK++  +             ++L  +SL +   T E+
Sbjct: 227 HLDISGN-KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEI 285

Query: 283 PESL-GRSPSLKFLNLAENDFE-KIPSSIKQLSNLLFLTLQNCK 324
           P+ L G   +L  L+L+ N F   +P      S L  L L +  
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  105 bits (265), Expect = 6e-24
 Identities = 60/247 (24%), Positives = 101/247 (40%), Gaps = 30/247 (12%)

Query: 89  NLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRC 148
               L+ L++S     + IP L     L+ LD+ G     +   +I    +L  LN+   
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSN 257

Query: 149 ISLK-SLPTGINLDSLKVLYLGGCS---NLKRFLEISC-NIENLDLSETAIE-ELPSSIG 202
                 +P    L SL+ L L        +  FL  +C  +  LDLS       +P   G
Sbjct: 258 -QFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG 315

Query: 203 NLSRLVRLDLTNCSRLKSV--SNSLCNLKSLQYLFLSGCLKLE-KLPEEIGNLESLKIML 259
           + S L  L L++ +        ++L  ++ L+ L LS   +   +LPE + NL       
Sbjct: 316 SCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFN-EFSGELPESLTNL------- 366

Query: 260 ANETAISQNLVDMSLVDCGIT-ELPESLGRSP--SLKFLNLAENDFE-KIPSSIKQLSNL 315
                 S +L+ + L     +  +  +L ++P  +L+ L L  N F  KIP ++   S L
Sbjct: 367 ------SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420

Query: 316 LFLTLQN 322
           + L L  
Sbjct: 421 VSLHLSF 427

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 80.7 bits (200), Expect = 4e-16
 Identities = 52/265 (19%), Positives = 97/265 (36%), Gaps = 31/265 (11%)

Query: 81  EQLWNGVQNLAALKRLNLSYCKQLS-RIPD---LSLALNLEWLDLVGCASLI-EIHSSIQ 135
           E L N   +L     L+LS     S  I      +    L+ L L        +I  ++ 
Sbjct: 361 ESLTNLSASL---LTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLS 415

Query: 136 HLNKLVFLNLGRCISLK-SLPTGI-NLDSLKVLYLGGCS---NLKRFLEISCNIENLDLS 190
           + ++LV L+L     L  ++P+ + +L  L+ L L        + + L     +E L L 
Sbjct: 416 NCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474

Query: 191 ETAIE-ELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLE-KLPEE 248
              +  E+PS + N + L  + L+N      +   +  L++L  L LS        +P E
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN-SFSGNIPAE 533

Query: 249 IGNLESLKIMLANE--------TAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAEN 300
           +G+  SL  +  N          A+ +    ++       +    +      K  + A N
Sbjct: 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG-KRYVYIKNDGMKKECHGAGN 592

Query: 301 DFE---KIPSSIKQLSNLLFLTLQN 322
             E        + +LS      + +
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITS 617

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.0 bits (180), Expect = 1e-13
 Identities = 50/257 (19%), Positives = 85/257 (33%), Gaps = 54/257 (21%)

Query: 113 ALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCS 172
           +++L    L        + SS+  L  L  L L       S+       SL  L L   S
Sbjct: 54  SIDLSSKPLNV--GFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 173 NLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNS-LCNLKSL 231
                  +S  +              +S+G+ S L  L++++ +       S    L SL
Sbjct: 112 -------LSGPVTT-----------LTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL 153

Query: 232 QYLFLSGCLKLE-KLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGIT-ELPESLGRS 289
           + L LS    +           +               L  +++    I+ ++   + R 
Sbjct: 154 EVLDLSAN-SISGANVVGWVLSDGCG-----------ELKHLAISGNKISGDVD--VSRC 199

Query: 290 PSLKFLNLAENDFE-KIPSSIKQLSNLLFLTLQNCK----------RLQSLPELPCGSNI 338
            +L+FL+++ N+F   IP  +   S L  L +   K              L  L   SN 
Sbjct: 200 VNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258

Query: 339 F-----ARYCTSLETLS 350
           F          SL+ LS
Sbjct: 259 FVGPIPPLPLKSLQYLS 275

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.1 bits (162), Expect = 2e-11
 Identities = 51/274 (18%), Positives = 98/274 (35%), Gaps = 37/274 (13%)

Query: 89  NLAALKRLNLSYCKQLS-RIP-DLSLALNLEWLDLVGCASLI-EIHSSIQHLNKLVFLNL 145
           N + L  L+LS+   LS  IP  L     L  L L     L  EI   + ++  L  L L
Sbjct: 416 NCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLIL 473

Query: 146 GRCISLK-SLPTGI-NLDSLKVLYLGGCS---NLKRFLEISCNIENLDLSETAIE-ELPS 199
                L   +P+G+ N  +L  + L        + +++    N+  L LS  +    +P+
Sbjct: 474 DFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

Query: 200 SIGNLSRLVRLDLTN---------CSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIG 250
            +G+   L+ LDL               +S   +   +   +Y+++      ++     G
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA-G 591

Query: 251 NLESLKIMLANETAISQNLVDMSLVDCGIT-ELPESLGRSPSLKFLNLAENDFE-KIPSS 308
           NL   + + + +          ++           +   + S+ FL+++ N     IP  
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651

Query: 309 IKQLSNLLFL-------------TLQNCKRLQSL 329
           I  +  L  L              + + + L  L
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 7e-10
 Identities = 47/264 (17%), Positives = 85/264 (32%), Gaps = 59/264 (22%)

Query: 89  NLAALKRLNLSYCKQLS-RIP-DLSLALNLEWLDLVGCASLI-EIHSSIQHLNKLVFLNL 145
           N   L  ++LS   +L+  IP  +    NL  L L    S    I + +     L++L+L
Sbjct: 488 NCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSNN-SFSGNIPAELGDCRSLIWLDL 545

Query: 146 G---------RCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEE 196
                       +  +S     N  + K         +K+    + N+            
Sbjct: 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI------ 599

Query: 197 LPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSG-------------CLKLE 243
               +  LS     ++T+       S +  N  S+ +L +S                 L 
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLF 659

Query: 244 KL-----------PEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSL 292
            L           P+E+G+L  L I+      +S N     L       +P+++     L
Sbjct: 660 ILNLGHNDISGSIPDEVGDLRGLNILD-----LSSN----KLDG----RIPQAMSALTML 706

Query: 293 KFLNLAENDFE-KIPSSIKQLSNL 315
             ++L+ N+    IP    Q    
Sbjct: 707 TEIDLSNNNLSGPIPEM-GQFETF 729

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (267), Expect = 1e-25
 Identities = 45/249 (18%), Positives = 87/249 (34%), Gaps = 23/249 (9%)

Query: 88  QNLAALKRLNLSYCKQLSRIPDLSLAL--NLEWLDLVGCASLIEIH-SSIQHLNKLVFLN 144
           QN    K   ++    L +          N++ LDL G   L +I  + +    KL  LN
Sbjct: 7   QNGNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLN 64

Query: 145 LGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNL 204
           L     L       +L +L+ L L    N  + L +  +IE L  +   I  +  S    
Sbjct: 65  LSSN-VLYETLDLESLSTLRTLDLNN--NYVQELLVGPSIETLHAANNNISRVSCSR--G 119

Query: 205 SRLVRLDLTNCSRLKSV-SNSLCNLKSLQYLFLSGCLKLEKLP--EEIGNLESLKIMLAN 261
                + L N  ++  +          +QYL L    +++ +   E   + ++L+ +   
Sbjct: 120 QGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQ 177

Query: 262 ETAIS--------QNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLS 313
              I           L  + L    +  +      +  + +++L  N    I  +++   
Sbjct: 178 YNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237

Query: 314 NLLFLTLQN 322
           NL    L+ 
Sbjct: 238 NLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.5 bits (194), Expect = 4e-16
 Identities = 43/243 (17%), Positives = 87/243 (35%), Gaps = 42/243 (17%)

Query: 130 IHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEISC----- 182
           IH   Q+ N+     +    SLK     +  +  ++K L L G  N    +  +      
Sbjct: 2   IHEIKQNGNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSG--NPLSQISAADLAPFT 58

Query: 183 NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKL 242
            +E L+LS   + E    + +LS L  LDL N   ++     L    S++ L  +    +
Sbjct: 59  KLELLNLSSNVLYETL-DLESLSTLRTLDLNNN-YVQ----ELLVGPSIETLHAANN-NI 111

Query: 243 EKLPEEIG-NLESL-----KIMLANETAISQ--NLVDMSLVDCGITELP--ESLGRSPSL 292
            ++    G   +++     KI +  +        +  + L    I  +   E    S +L
Sbjct: 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 293 KFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNL 352
           + LNL  N    +   +   + L  L L +  +L  +                 ++ + +
Sbjct: 172 EHLNLQYNFIYDVKGQV-VFAKLKTLDLSSN-KLAFMGP-------------EFQSAAGV 216

Query: 353 STL 355
           + +
Sbjct: 217 TWI 219

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  108 bits (271), Expect = 5e-25
 Identities = 51/304 (16%), Positives = 94/304 (30%), Gaps = 33/304 (10%)

Query: 65  NIPEHLVSLEMPHSNIEQLWNGVQN--LAALKRLNLSYCKQLSRIPDLSLALNLEWLDLV 122
           +  +      +P  N  +  + ++   +     L L+    LS +PD +L   +  L++ 
Sbjct: 31  SAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRL-NLSSLPD-NLPPQITVLEIT 88

Query: 123 GCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISC 182
              +LI +      L  L   +      L +LP      SLK L +     L    E+  
Sbjct: 89  QN-ALISLPELPASLEYLDACDN----RLSTLPE--LPASLKHLDVDNN-QLTMLPELPA 140

Query: 183 NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKL 242
            +E ++     +  LP    +L  L    + N  +L  +       +SL+ L +S    L
Sbjct: 141 LLEYINADNNQLTMLPELPTSLEVL---SVRNN-QLTFLPELP---ESLEALDVSTN-LL 192

Query: 243 EKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDF 302
           E LP         +          +  +     +  IT +PE++        + L +N  
Sbjct: 193 ESLPAVPVRNHHSE----------ETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242

Query: 303 EKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSEL 362
                                             N   R      T        +  S++
Sbjct: 243 SSRIRESLSQQTAQPDYHGP---RIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQI 299

Query: 363 WQAF 366
           W AF
Sbjct: 300 WHAF 303

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  105 bits (263), Expect = 3e-24
 Identities = 59/317 (18%), Positives = 122/317 (38%), Gaps = 36/317 (11%)

Query: 57  PLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNL 116
           P+  + +       +   +  +N+    +   +L  +  L       +  I  +    NL
Sbjct: 13  PINQIFTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRL-GIKSIDGVEYLNNL 70

Query: 117 EWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGC--SNL 174
             ++       +   + +++L KLV + +     +  +    NL +L  L L     +++
Sbjct: 71  TQINFSNN--QLTDITPLKNLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNNQITDI 127

Query: 175 KRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYL 234
                ++ N+  L+LS   I ++ + +  L+ L +L   N     +    L NL +L+ L
Sbjct: 128 DPLKNLT-NLNRLELSSNTISDISA-LSGLTSLQQLSFGNQ---VTDLKPLANLTTLERL 182

Query: 235 FLSGCLKLEKLPEEIGNLESLKIMLANETAIS--------QNLVDMSLVDCGITELPESL 286
            +S   K+  +   +  L +L+ ++A    IS         NL ++SL    + ++  +L
Sbjct: 183 DISSN-KVSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TL 239

Query: 287 GRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCK--------RLQSLPELPCGSNI 338
               +L  L+LA N    +   +  L+ L  L L   +         L +L  L    N 
Sbjct: 240 ASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 298

Query: 339 FARYCTSLETLSNLSTL 355
                  +  +SNL  L
Sbjct: 299 L----EDISPISNLKNL 311

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  101 bits (255), Expect = 3e-23
 Identities = 58/304 (19%), Positives = 119/304 (39%), Gaps = 32/304 (10%)

Query: 69  HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLI 128
           +L  LE+  + I  + + +  L +L++L+     Q++ +  L+    LE LD+      +
Sbjct: 135 NLNRLELSSNTISDI-SALSGLTSLQQLSFGN--QVTDLKPLANLTTLERLDISSNK--V 189

Query: 129 EIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISC--NIEN 186
              S +  L  L  L       +  +     L +L  L L G   LK    ++   N+ +
Sbjct: 190 SDISVLAKLTNLESLIATNN-QISDITPLGILTNLDELSLNGN-QLKDIGTLASLTNLTD 247

Query: 187 LDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLP 246
           LDL+   I  L   +  L++L  L L    ++ ++S  L  L +L  L L+   +LE + 
Sbjct: 248 LDLANNQISNLAP-LSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNEN-QLEDIS 303

Query: 247 EEIGNLESLKIMLANETAIS--------QNLVDMSLVDCGITELPESLGRSPSLKFLNLA 298
             I NL++L  +      IS          L  +   +  ++++   L    ++ +L+  
Sbjct: 304 P-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAG 361

Query: 299 ENDFEKIPSSIKQLSNLLFLTLQNCK-------RLQSLPELPCGSNIFARYCTSLETLSN 351
            N    +   +  L+ +  L L +            ++       N+      +  T+S+
Sbjct: 362 HNQISDLT-PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL-IAPATISD 419

Query: 352 LSTL 355
             + 
Sbjct: 420 GGSY 423

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 94.3 bits (235), Expect = 1e-20
 Identities = 50/280 (17%), Positives = 109/280 (38%), Gaps = 32/280 (11%)

Query: 93  LKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLK 152
           L    ++    +++I   +         L G  ++ +   S   L+++  L   R   +K
Sbjct: 3   LGSATITQDTPINQIFTDTALAEKMKTVL-GKTNVTDT-VSQTDLDQVTTLQADRL-GIK 59

Query: 153 SLPTGINLDSLKVLYLGGCSNLKRFLEISC--NIENLDLSETAIEELPSSIGNLSRLVRL 210
           S+     L++L  +       L     +     + ++ ++   I ++   + NL+ L  L
Sbjct: 60  SIDGVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGL 117

Query: 211 DLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIM-----LANETAI 265
            L N  ++  +   L NL +L  L LS    +  +   +  L SL+ +     + +   +
Sbjct: 118 TLFNN-QITDIDP-LKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLSFGNQVTDLKPL 173

Query: 266 SQ--NLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC 323
           +    L  + +    ++++   L +  +L+ L    N    I   +  L+NL  L+L   
Sbjct: 174 ANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGN 231

Query: 324 K--------RLQSLPELPCGSNIFARYCTSLETLSNLSTL 355
           +         L +L +L   +N      ++L  LS L+ L
Sbjct: 232 QLKDIGTLASLTNLTDLDLANNQI----SNLAPLSGLTKL 267

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 35/184 (19%), Positives = 67/184 (36%), Gaps = 14/184 (7%)

Query: 57  PLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNL 116
           PL  L +      L +LE+  + +E + + + NL  L  L L +   +S I  +S    L
Sbjct: 282 PLAGLTA------LTNLELNENQLEDI-SPISNLKNLTYLTLYFN-NISDISPVSSLTKL 333

Query: 117 EWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGC--SNL 174
           + L        +   SS+ +L  + +L+ G    +  L    NL  +  L L     +N 
Sbjct: 334 QRLFFYNN--KVSDVSSLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQAWTNA 390

Query: 175 KRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYL 234
               + + +I N   + T     P++I +       D+T  +     +           +
Sbjct: 391 PVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITW-NLPSYTNEVSYTFSQPVTI 449

Query: 235 FLSG 238
               
Sbjct: 450 GKGT 453

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  105 bits (265), Expect = 3e-24
 Identities = 73/376 (19%), Positives = 135/376 (35%), Gaps = 40/376 (10%)

Query: 5   IEGISLDMFRMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSK 64
           +  I    F+  RL      N+F  +N  K           + L   ++          K
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 65  NIPEHLVSLEMPHSNIEQLWNGV-------QNLAALKRLNLSYCKQLSRIPDLSLALNLE 117
           +  E L +L +    +  L   +         L  +   +L     + R+ D S     +
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKDFSYNFGWQ 307

Query: 118 WLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRF 177
            L+LV C         ++ L +L F +        +  + ++L SL+ L L       + 
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTSN----KGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 178 LEISC-----NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNS--LCNLKS 230
                     +++ LDLS   +  + S+   L +L  LD  +   LK +S      +L++
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRN 422

Query: 231 LQYLFLSGCLKLEKLPEEIGNLESLKIM-----------LANETAISQNLVDMSLVDCGI 279
           L YL +S              L SL+++           L +     +NL  + L  C +
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 280 TEL-PESLGRSPSLKFLNLAENDFEK-IPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSN 337
            +L P +     SL+ LN++ N+F        K L++L  L       + +  +      
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKK-----Q 536

Query: 338 IFARYCTSLETLSNLS 353
               + +SL  L NL+
Sbjct: 537 ELQHFPSSLAFL-NLT 551

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.9 bits (221), Expect = 9e-19
 Identities = 58/306 (18%), Positives = 105/306 (34%), Gaps = 46/306 (15%)

Query: 93  LKRLNLSYCKQLSRIPDLSLAL--NLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCIS 150
            K L+LS+   L  +   S      L+ LDL  C        + Q L+ L  L L     
Sbjct: 30  TKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-P 87

Query: 151 LKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEEL-PSSIGNLSRLVR 209
           ++SL  G            G S+L++          L   ET +  L    IG+L  L  
Sbjct: 88  IQSLALGA---------FSGLSSLQK----------LVAVETNLASLENFPIGHLKTLKE 128

Query: 210 LDLTNCSRLKSV--SNSLCNLKSLQYLFLSGCLKLEKL-PEEIGNLESLKIMLANETAIS 266
           L++ +   ++S        NL +L++L LS   K++ +   ++  L  + +         
Sbjct: 129 LNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPL--------- 177

Query: 267 QNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDF--EKIPSSIKQLSNLLFLTLQNCK 324
              + + L    +  +     +   L  L L  N      + + I+ L+ L    L   +
Sbjct: 178 -LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 325 RLQSLPELPCGSNIFARYCTSLE----TLSNLSTLFTRSSELWQAFDFCNCFKLNRNEIG 380
             ++   L            +L      L+ L        +L+      + F L    I 
Sbjct: 237 -FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

Query: 381 EIVDGA 386
            + D +
Sbjct: 296 RVKDFS 301

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 81.2 bits (201), Expect = 3e-16
 Identities = 51/218 (23%), Positives = 80/218 (36%), Gaps = 46/218 (21%)

Query: 179 EISCNIENLDLSETAIEEL-PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLS 237
            +  + +NLDLS   +  L   S  +   L  LDL+ C        +  +L  L  L L+
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 238 GCLKLEKL-PEEIGNLESLKIMLANETAISQNLVDMSLVDCGITEL-PESLGRSPSLKFL 295
           G   ++ L       L SL+               +  V+  +  L    +G   +LK L
Sbjct: 85  GN-PIQSLALGAFSGLSSLQK--------------LVAVETNLASLENFPIGHLKTLKEL 129

Query: 296 NLAENDFE--KIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLS 353
           N+A N  +  K+P     L+NL  L L + K +QS+              T L  L  + 
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYC------------TDLRVLHQMP 176

Query: 354 TLFTRSSELWQAFDFCNCFKLNRNEIGEIVDGALKKIQ 391
            L                  L+ N +  I  GA K+I+
Sbjct: 177 LLNLSLD-------------LSLNPMNFIQPGAFKEIR 201

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.1 bits (193), Expect = 2e-15
 Identities = 51/292 (17%), Positives = 95/292 (32%), Gaps = 37/292 (12%)

Query: 64  KNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLA--LNLEWLDL 121
             +P   +SL++  + +  +  G      L +L L        +    +     LE   L
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 122 VGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEIS 181
                   +    ++   L   +      L +L       +    YL    +L   L   
Sbjct: 233 --------VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT-- 282

Query: 182 CNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLK 241
            N+ +  L    IE +            L+L NC   +  +  L +LK L +    G   
Sbjct: 283 -NVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG--- 337

Query: 242 LEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAEND 301
                    +L SL+ +  +   +S                 +S   + SLK+L+L+ N 
Sbjct: 338 --GNAFSEVDLPSLEFLDLSRNGLS-----------FKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 302 FEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLS 353
              + S+   L  L  L  Q+   L+ + E     +       +L  L ++S
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLS-----LRNLIYL-DIS 429

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  105 bits (263), Expect = 7e-24
 Identities = 59/340 (17%), Positives = 122/340 (35%), Gaps = 46/340 (13%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLAL-- 114
           L  +P  ++P ++  L + H+ + +L        + L  L++ +   +S++         
Sbjct: 16  LTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLP 73

Query: 115 NLEWLDLVGCASLIEIH-SSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGC 171
            L+ L+L     L ++   +      L  L+L    S++ +         +L  L L   
Sbjct: 74  MLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHN 131

Query: 172 SNLKRFLEISC----NIENLDLSETAIEELPS---SIGNLSRLVRLDLTNCSRLKSVSNS 224
             L      +     N++ L LS   I+ L S    I   S L +L+L++    +     
Sbjct: 132 -GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190

Query: 225 LCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPE 284
              +  L  LFL+       L E++    +             ++ ++SL +  ++    
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANT-----------SIRNLSLSNSQLSTTSN 239

Query: 285 SLG---RSPSLKFLNLAENDFEKI-PSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFA 340
           +     +  +L  L+L+ N+   +   S   L  L +  L+    +Q L           
Sbjct: 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFS--------- 289

Query: 341 RYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKLNRNEIG 380
               SL  L N+  L  + S   Q+    +  K++     
Sbjct: 290 ---HSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 96.6 bits (241), Expect = 4e-21
 Identities = 63/336 (18%), Positives = 121/336 (36%), Gaps = 49/336 (14%)

Query: 56  YPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA- 113
           + L ++   N+        +  +++ ++ +   Q L  L+ LN+     +  I       
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTG 351

Query: 114 -LNLEWLDLVG-CASLIEIHSSI---QHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVL 166
            +NL++L L     SL  + +        + L  LNL +   +  + +     L  L+VL
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN-KISKIESDAFSWLGHLEVL 410

Query: 167 YLGGCSNLKRFLEISC-----NIENLDLSETAIEEL-PSSIGNLSRLVRLDLTNC--SRL 218
            LG    + + L         NI  + LS     +L  +S   +  L RL L       +
Sbjct: 411 DLGLN-EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNV 469

Query: 219 KSVSNSLCNLKSLQYLFLSGCLKLEKLPEE-IGNLESLKIM------------------L 259
            S  +    L++L  L LS    +  + ++ +  LE L+I+                   
Sbjct: 470 DSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528

Query: 260 ANETAISQNLVDMSLVDCGITEL-PESLGRSPSLKFLNLAENDFEKI-PSSIKQLSNLLF 317
                   +L  ++L   G  E+  E       LK ++L  N+   +  S      +L  
Sbjct: 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588

Query: 318 LTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLS 353
           L LQ    + S+ +      +F     +L  L ++ 
Sbjct: 589 LNLQKNL-ITSVEK-----KVFGPAFRNLTEL-DMR 617

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 88.9 bits (221), Expect = 1e-18
 Identities = 69/328 (21%), Positives = 112/328 (34%), Gaps = 51/328 (15%)

Query: 69  HLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSY--------CKQLSRIPDLSLAL--NLE 117
            L    + ++NI+ L++     L  ++ LNL             L +I D S      LE
Sbjct: 273 QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332

Query: 118 WLDLVGCASLIEIHSSIQHLNKLVFLNLGR-CISLKSLP----TGINLDSLKVLYLGGC- 171
            L++          +    L  L +L+L     SL++L       +    L +L L    
Sbjct: 333 HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK 392

Query: 172 --SNLKRFLEISCNIENLDLSETAIEEL--PSSIGNLSRLVRLDLTNCSRLKSVSNSLCN 227
                        ++E LDL    I +         L  +  + L+    L+   NS   
Sbjct: 393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL 452

Query: 228 LKSLQYLFLSGCL--KLEKLPEEIGNLESLKIMLANETAIS----------QNLVDMSLV 275
           + SLQ L L       ++  P     L +L I+  +   I+          + L  + L 
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512

Query: 276 DCGITEL---------PESLGRSPSLKFLNLAENDFEKI-PSSIKQLSNLLFLTLQNCKR 325
              +  L            L     L  LNL  N F++I     K L  L  + L     
Sbjct: 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-N 571

Query: 326 LQSLPELPCGSNIFARYCTSLETLSNLS 353
           L +LP      ++F     SL++L NL 
Sbjct: 572 LNTLPA-----SVFNN-QVSLKSL-NLQ 592

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 81.2 bits (201), Expect = 3e-16
 Identities = 41/197 (20%), Positives = 73/197 (37%), Gaps = 27/197 (13%)

Query: 162 SLKVLYLGGCSNLKRF-LEISCNIENLDLSETAIEEL-PSSIGNLSRLVRLDLTNCSRLK 219
           S +V        L +   ++  NI  L+L+   +  L  ++    S+L  LD+   +  K
Sbjct: 5   SHEVADCSHL-KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 220 SVSNSLCNLKSLQYLFLSGCLKLEKLPEE-IGNLESLKIMLANETAISQNLVDMSLVDCG 278
                   L  L+ L L    +L +L ++      +L                + L+   
Sbjct: 64  LEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTE--------------LHLMSNS 108

Query: 279 ITEL-PESLGRSPSLKFLNLAENDFEKI-PSSIKQLSNLLFLTLQNCKRLQSLPELPCGS 336
           I ++      +  +L  L+L+ N        +  QL NL  L L N K +Q+L       
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKS----E 163

Query: 337 NIFARYCTSLETLSNLS 353
            +     +SL+ L  LS
Sbjct: 164 ELDIFANSSLKKL-ELS 179

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 78.9 bits (195), Expect = 2e-15
 Identities = 59/281 (20%), Positives = 101/281 (35%), Gaps = 44/281 (15%)

Query: 68  EHLVSLEMPHSNIEQL--WNGVQNLAALKRLNLSYCKQLSRIPDLSLAL--NLEWLDLVG 123
            HL  L++  + I Q       + L  +  + LSY K   ++   S AL  +L+ L L  
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRR 463

Query: 124 C--ASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLE 179
               ++    S  Q L  L  L+L    ++ ++   +   L+ L++L L           
Sbjct: 464 VALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHN-------- 514

Query: 180 ISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVS-NSLCNLKSLQYLFLSG 238
              N+  L             +  LS L  L+L +      +      +L  L+ + L  
Sbjct: 515 ---NLARLW-KHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGL 569

Query: 239 CLKLEKLPEEI-GNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRS--PSLKFL 295
              L  LP  +  N  SLK +      + +NL         IT + + +      +L  L
Sbjct: 570 N-NLNTLPASVFNNQVSLKSLN-----LQKNL---------ITSVEKKVFGPAFRNLTEL 614

Query: 296 NLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGS 336
           ++  N F+    SI    N +  T  N   L S     C +
Sbjct: 615 DMRFNPFDCTCESIAWFVNWINETHTNIPELSS--HYLCNT 653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  100 bits (250), Expect = 1e-22
 Identities = 44/249 (17%), Positives = 86/249 (34%), Gaps = 23/249 (9%)

Query: 88  QNLAALKRLNLSYCKQLSRIPDLSLAL--NLEWLDLVGCASLIEIH-SSIQHLNKLVFLN 144
           QN    K   ++    L +          N++ LDL G   L +I  + +    KL  LN
Sbjct: 7   QNGNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLN 64

Query: 145 LGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNL 204
           L     L       +L +L+ L L    N  + L +  +IE L  +   I  +  S    
Sbjct: 65  LSSN-VLYETLDLESLSTLRTLDLNN--NYVQELLVGPSIETLHAANNNISRVSCSR--G 119

Query: 205 SRLVRLDLTNCSRLKSV-SNSLCNLKSLQYLFLSGCLKLEKLPEE--IGNLESLKIMLAN 261
                + L N  ++  +          +QYL L    +++ +       + ++L+ +   
Sbjct: 120 QGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQ 177

Query: 262 ETAIS--------QNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLS 313
              I           L  + L    +  +      +  + +++L  N    I  +++   
Sbjct: 178 YNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237

Query: 314 NLLFLTLQN 322
           NL    L+ 
Sbjct: 238 NLEHFDLRG 246

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 84.9 bits (210), Expect = 1e-17
 Identities = 34/287 (11%), Positives = 85/287 (29%), Gaps = 31/287 (10%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLA--LN 115
           ++ L        + +L   ++NI ++          K + L+   +++ + DL       
Sbjct: 92  VQELLV---GPSIETLHAANNNISRV--SCSRGQGKKNIYLANN-KITMLRDLDEGCRSR 145

Query: 116 LEWLDLVGCA-SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGC--S 172
           +++LDL       +         + L  LNL     +  +   +    LK L L     +
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNKLA 204

Query: 173 NLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDL--------------TNCSRL 218
            +    + +  +  + L    +  +  ++     L   DL              +   R+
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

Query: 219 KSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLAN--ETAISQNLVDMSLVD 276
           ++V+     +K L       C             E L    A+       +    +S   
Sbjct: 265 QTVAKQ--TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQG 322

Query: 277 CGITELPESLGRSPSLKFLNLAENDFEKIPSSI-KQLSNLLFLTLQN 322
                L          + ++  +  +  +   +  +    + L  + 
Sbjct: 323 SETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK 369

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 74.9 bits (184), Expect = 2e-14
 Identities = 43/242 (17%), Positives = 86/242 (35%), Gaps = 40/242 (16%)

Query: 130 IHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEISC----N 183
           IH   Q+ N+     +    SLK     +  +  ++K L L G   L +           
Sbjct: 2   IHEIKQNGNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTK 59

Query: 184 IENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLE 243
           +E L+LS   + E    + +LS L  LDL N   ++     L    S++ L  +    + 
Sbjct: 60  LELLNLSSNVLYETL-DLESLSTLRTLDLNNN-YVQ----ELLVGPSIETLHAANN-NIS 112

Query: 244 KLPEEIG-NLESL-----KIMLANETAISQ--NLVDMSLVDCGITELP--ESLGRSPSLK 293
           ++    G   +++     KI +  +        +  + L    I  +   E    S +L+
Sbjct: 113 RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172

Query: 294 FLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLS 353
            LNL  N    +   +   + L  L L +  +L  +                 ++ + ++
Sbjct: 173 HLNLQYNFIYDVKGQV-VFAKLKTLDLSSN-KLAFMGP-------------EFQSAAGVT 217

Query: 354 TL 355
            +
Sbjct: 218 WI 219

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 99.7 bits (249), Expect = 4e-22
 Identities = 60/300 (20%), Positives = 116/300 (38%), Gaps = 39/300 (13%)

Query: 69  HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLA--LNLEWLDLVGCAS 126
            L  L++  +++ +L +G+  L+ LK+L LS   +   +  +S +   +L  L + G   
Sbjct: 279 GLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTK 337

Query: 127 LIEIHS-SIQHLNKLVFLNLGRC-ISLKSLPTGI--NLDSLKVLYLGGC--SNLKRFLEI 180
            +E+ +  +++L  L  L+L    I           NL  L+ L L      +LK     
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 181 SC-NIENLDLSETAIEEL--PSSIGNLSRLVRLDLTNCSRLKSVSN-SLCNLKSLQYLFL 236
            C  +E LDL+ T ++     S   NL  L  L+L++   L   S      L +LQ+L L
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISSEQLFDGLPALQHLNL 456

Query: 237 SGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELP-ESLGRSPSLKFL 295
            G    +   ++  +L++L             L  + L  C ++ +   +      +  +
Sbjct: 457 QGNHFPKGNIQKTNSLQTLG-----------RLEILVLSFCDLSSIDQHAFTSLKMMNHV 505

Query: 296 NLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTL 355
           +L+ N               ++L L +   +  +              + L  LS   T+
Sbjct: 506 DLSHNRLTSSSIEALSHLKGIYLNLAS-NHISIILP------------SLLPILSQQRTI 552

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 96.2 bits (240), Expect = 5e-21
 Identities = 59/323 (18%), Positives = 112/323 (34%), Gaps = 40/323 (12%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA--L 114
           L  +P   +P     LE   + +  + N     L  L  L+L+ C Q+  I + +     
Sbjct: 24  LNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQH 81

Query: 115 NLEWLDLVGCASLIEIHSSI-QHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGC 171
            L+ L L     LI +  +       L  L   +   + S+      N  +L+ LYLG  
Sbjct: 82  RLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSN 139

Query: 172 SNLKRFLEISC----NIENLDLSETAIEEL-PSSIGNLSRLVRLDL-TNCSRLKSVSNSL 225
            ++             ++ LD    AI  L    + +L +   L L  N + +  +    
Sbjct: 140 -HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198

Query: 226 CNLKSLQYLFLSGCLKLEKLPEE-----IGNLESLKIMLANETAISQ---------NLVD 271
            +    Q L   G   L  + +      I +L        ++  IS          ++  
Sbjct: 199 FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258

Query: 272 MSLVDCGITEL-PESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLP 330
           ++L       +   +      L+ L+L      ++PS +  LS L  L L    + ++L 
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLC 317

Query: 331 ELPCGSNIFARYCTSLETLSNLS 353
           ++   +        SL  L ++ 
Sbjct: 318 QISASN------FPSLTHL-SIK 333

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 88.5 bits (220), Expect = 1e-18
 Identities = 67/345 (19%), Positives = 117/345 (33%), Gaps = 51/345 (14%)

Query: 69  HLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA----LNLEWLDLVG 123
            L SL +  ++I  +          LK L+      +  +    ++         L+L G
Sbjct: 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNG 188

Query: 124 CASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI---NLDSLKVLYLGGCSNLKRFLEI 180
              +  I            LN G   +L  +  G+    + SL +       + +     
Sbjct: 189 N-DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM-DDEDISPA 246

Query: 181 S------CNIENLDLSETAIEEL-PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQY 233
                   ++E+++L +     +  ++    S L  LDLT    L  + + L  L +L+ 
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKK 305

Query: 234 LFLSGCLKLEKLPEE-IGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSL 292
           L LS   K E L +    N  SL        +I  N   + L           L    +L
Sbjct: 306 LVLSAN-KFENLCQISASNFPSLT-----HLSIKGNTKRLELG-------TGCLENLENL 352

Query: 293 KFLNLAENDFEKIPS---SIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETL 349
           + L+L+ +D E        ++ LS+L  L L   +   SL      +  F   C  LE L
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLK-----TEAFKE-CPQLELL 405

Query: 350 SNLSTLFTRSSELWQAFDFCNCFKL-----NRNEIGEIVDGALKK 389
            +L+  FTR         F N   L     + + +    +     
Sbjct: 406 -DLA--FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.9 bits (208), Expect = 3e-17
 Identities = 57/296 (19%), Positives = 105/296 (35%), Gaps = 36/296 (12%)

Query: 69  HLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA--LNLEWLDLVGCA 125
            L  L +  +  E L      N  +L  L++    +   +    L    NL  LDL    
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 126 --SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEIS 181
             +    +  +++L+ L  LNL       SL T        L++L L     LK     S
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFT-RLKVKDAQS 419

Query: 182 C-----NIENLDLSETAIEELP-SSIGNLSRLVRLDLTNCSRLKSV----SNSLCNLKSL 231
                  ++ L+LS + ++         L  L  L+L             +NSL  L  L
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRL 478

Query: 232 QYLFLSGCLKLEKLPEEI-GNLESLKIMLANETAISQ---------NLVDMSLVDCGITE 281
           + L LS C  L  + +    +L+ +  +  +   ++            + ++L    I+ 
Sbjct: 479 EILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISI 537

Query: 282 LPES-LGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGS 336
           +  S L      + +NL +N  +   S        L    +N ++L+   +  C +
Sbjct: 538 ILPSLLPILSQQRTINLRQNPLDCTCS----NIYFLEWYKENMQKLEDTEDTLCEN 589

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.8 bits (187), Expect = 1e-14
 Identities = 39/216 (18%), Positives = 65/216 (30%), Gaps = 47/216 (21%)

Query: 180 ISCNIENLDLSETAIEEL-PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSG 238
           +  + E L+ S   +  +  ++   L  L  LDLT C       ++  +   L  L L+ 
Sbjct: 31  LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 239 CLKLEKLPEEI-GNLESLKIMLANETAISQNLVDMSLVDCGITELPE-SLGRSPSLKFLN 296
              L  + E      ++LK               +  +  GI+ +    L    +L+ L 
Sbjct: 91  N-PLIFMAETALSGPKALKH--------------LFFIQTGISSIDFIPLHNQKTLESLY 135

Query: 297 LAENDFEKIP-SSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTL 355
           L  N    I          L  L  QN   +  L +              + +L   + L
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSK------------EDMSSLQQATNL 182

Query: 356 FTRSSELWQAFDFCNCFKLNRNEIGEIVDGALKKIQ 391
                             LN N+I  I  GA     
Sbjct: 183 S---------------LNLNGNDIAGIEPGAFDSAV 203

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 98.6 bits (246), Expect = 7e-22
 Identities = 75/363 (20%), Positives = 137/363 (37%), Gaps = 46/363 (12%)

Query: 5   IEGISLDMFRMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSK 64
           +  I    F+  RL      N+F  +N  K           + L   ++          K
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248

Query: 65  NIPEHLVSLEMPHSNIEQLWNGV-------QNLAALKRLNLSYCKQLSRIPDLSLALNLE 117
           +  E L +L +    +  L   +         L  +   +L     + R+ D S     +
Sbjct: 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKDFSYNFGWQ 307

Query: 118 WLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRF 177
            L+LV C         ++ L +L F +        +  + ++L SL+ L L    N   F
Sbjct: 308 HLELVNCKFGQFPTLKLKSLKRLTFTS----NKGGNAFSEVDLPSLEFLDLSR--NGLSF 361

Query: 178 LEIS-------CNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNS--LCNL 228
                       +++ LDLS   +  + S+   L +L  LD  +   LK +S      +L
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSL 420

Query: 229 KSLQYLFLSGCLKLEKLPEEI-GNLESLKIMLANETAISQNLVDMSLVDCGITELPESLG 287
           ++L YL +S           I   L SL+++     +  +N             LP+   
Sbjct: 421 RNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENF------------LPDIFT 467

Query: 288 RSPSLKFLNLAENDFEKIPSSI-KQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSL 346
              +L FL+L++   E++  +    LS+L  L + +  +L+S+P+      IF R  TSL
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPD-----GIFDR-LTSL 520

Query: 347 ETL 349
           + +
Sbjct: 521 QKI 523

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.5 bits (212), Expect = 1e-17
 Identities = 66/326 (20%), Positives = 119/326 (36%), Gaps = 38/326 (11%)

Query: 5   IEGISLDMF-RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPS 63
           +E         +  L   +F  +        +     L +    +  F      ++ +  
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLA---YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 64  KNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVG 123
            +       LE+ +    Q       L +LKRL  +  K  +   ++ L  +LE+LDL  
Sbjct: 300 FSYNFGWQHLELVNCKFGQF--PTLKLKSLKRLTFTSNKGGNAFSEVDLP-SLEFLDLSR 356

Query: 124 CA-SLIEIHS-SIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEI 180
              S     S S      L +L+L     + ++ +    L+ L+ L      NLK+  E 
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEF 414

Query: 181 SC-----NIENLDLSETAIEELPSSI-GNLSRLVRLDLTNCSRLKSV--SNSLCNLKSLQ 232
           S      N+  LD+S T      + I   LS L  L +      +     +    L++L 
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLT 473

Query: 233 YLFLSGCLKLEKLPEEI-GNLESLKIMLANETAISQNLVDMSLVDCGITELPES-LGRSP 290
           +L LS C +LE+L      +L SL+++              ++    +  +P+    R  
Sbjct: 474 FLDLSQC-QLEQLSPTAFNSLSSLQVL--------------NMASNQLKSVPDGIFDRLT 518

Query: 291 SLKFLNLAENDFEKIPSSIKQLSNLL 316
           SL+ + L  N ++     I  LS  L
Sbjct: 519 SLQKIWLHTNPWDCSCPRIDYLSRWL 544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.8 bits (197), Expect = 7e-16
 Identities = 68/331 (20%), Positives = 115/331 (34%), Gaps = 50/331 (15%)

Query: 58  LKSLPSKNIP--EHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA- 113
           L+ L S +      L  L++    I+ + +G  Q+L+ L  L L+    +  +   + + 
Sbjct: 40  LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSG 98

Query: 114 -LNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI---NLDSLKVLYLG 169
             +L+ L  V        +  I HL  L  LN+     ++S        NL +L+ L L 
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLS 157

Query: 170 G-------CSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSV- 221
                   C++L+   ++     +LDLS   +  +        RL +L L N     +V 
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217

Query: 222 SNSLCNLKSLQYLFLSGCL----------------KLEKLPEEIGNLESLKIMLANETAI 265
              +  L  L+   L                     L  L  E   L  L   L +   +
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277

Query: 266 SQNLVD---MSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQN 322
              L +    SLV   I  + +        + L L    F + P+   +L +L  LT  +
Sbjct: 278 FNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTL--KLKSLKRLTFTS 334

Query: 323 CKRLQSLPELPCGSNIFARYCTSLETLSNLS 353
            K            +       SLE L +LS
Sbjct: 335 NK----GGNAFSEVD-----LPSLEFL-DLS 355

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 70.1 bits (172), Expect = 7e-13
 Identities = 49/217 (22%), Positives = 78/217 (35%), Gaps = 44/217 (20%)

Query: 179 EISCNIENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLS 237
            +  + +NLDLS   +  L S S  +   L  LDL+ C        +  +L  L  L L+
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 238 GCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPE-SLGRSPSLKFLN 296
           G   ++ L         L            +L  +  V+  +  L    +G   +LK LN
Sbjct: 85  GN-PIQSLALGA--FSGLS-----------SLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 297 LAENDFEKI--PSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLST 354
           +A N  +    P     L+NL  L L + K +QS+                   L  L  
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYC---------------TDLRVLHQ 174

Query: 355 LFTRSSELWQAFDFCNCFKLNRNEIGEIVDGALKKIQ 391
           +   +  L           L+ N +  I  GA K+I+
Sbjct: 175 MPLLNLSLD----------LSLNPMNFIQPGAFKEIR 201

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.7 bits (163), Expect = 8e-12
 Identities = 57/295 (19%), Positives = 105/295 (35%), Gaps = 38/295 (12%)

Query: 69  HLVSLEMPHSNIEQLWNG--VQNLAALKRLNLSYCKQLSRIPD------LSLALNLEWLD 120
            L  L + H+ I+         NL  L+ L+LS   ++  I          + L    LD
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 121 LVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYL-----GGCSN 173
           L     +  I        +L  L L       ++       L  L+V  L         N
Sbjct: 184 LSLN-PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 174 LKRFLE------ISCNIENLDLS--ETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNS- 224
           L++F +       +  IE   L+  +  ++++      L+ +    L + + ++ V +  
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKDFS 301

Query: 225 -LCNLKSLQYLFLSGC----LKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGI 279
                + L+ +         LKL+ L        S K   A       +L  + L   G+
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRL--TFTSNKGGNAFSEVDLPSLEFLDLSRNGL 359

Query: 280 TEL---PESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPE 331
           +      +S   + SLK+L+L+ N    + S+   L  L  L  Q+   L+ + E
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSE 413

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 97.5 bits (243), Expect = 1e-21
 Identities = 57/279 (20%), Positives = 104/279 (37%), Gaps = 31/279 (11%)

Query: 69  HLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA--LNLEWLDLVGCA 125
           HL  LE+  + +  +  G   NL  L+ L L    +L  IP        NL  LD+    
Sbjct: 57  HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISEN- 114

Query: 126 SLIEIHSSI-QHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEISC 182
            ++ +   + Q L  L  L +G    L  +       L+SL+ L L         +    
Sbjct: 115 KIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLE--KCNLTSIPTEA 171

Query: 183 -----NIENLDLSETAIEELPSSI-GNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFL 236
                 +  L L    I  +       L RL  L++++   L +++ +     +L  L +
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231

Query: 237 SGCLKLEKLPEE-IGNLESLKIMLANETAIS----------QNLVDMSLVDCGITELPE- 284
           + C  L  +P   + +L  L+ +  +   IS            L ++ LV   +  +   
Sbjct: 232 THC-NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY 290

Query: 285 SLGRSPSLKFLNLAENDFEKIPSSI-KQLSNLLFLTLQN 322
           +      L+ LN++ N    +  S+   + NL  L L +
Sbjct: 291 AFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 42/224 (18%), Positives = 77/224 (34%), Gaps = 50/224 (22%)

Query: 181 SCNIEN--LDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVS-NSLCNLKSLQYLFLS 237
            C+ ++  +         +P  I   +    LDL    R+K+++ +   +   L+ L L+
Sbjct: 8   ECSAQDRAVLCHRKRFVAVPEGI--PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELN 64

Query: 238 GCLKLEKLPEEI-GNLESLKIMLANETAISQ----------NLVDMSLVDCGITELPESL 286
               +  +      NL +L+ +      +            NL  + + +  I  L + +
Sbjct: 65  EN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM 123

Query: 287 GRS-PSLKFLNLAENDFEKIPSSI-KQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCT 344
            +   +LK L + +ND   I       L++L  LTL+ C  L S+P              
Sbjct: 124 FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPT------------E 170

Query: 345 SLETLSNLSTLFTRSSELWQAFDFCNCFKLNRNEIGEIVDGALK 388
           +L  L  L  L                  L    I  I D + K
Sbjct: 171 ALSHLHGLIVLR-----------------LRHLNINAIRDYSFK 197

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 95.5 bits (238), Expect = 2e-21
 Identities = 59/350 (16%), Positives = 124/350 (35%), Gaps = 49/350 (14%)

Query: 24  YNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPE-----HLVSLEMPHS 78
           YN  P   + K     C++S       F      +++       E     +   +   +S
Sbjct: 1   YNVKPRQPEYK-----CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS 55

Query: 79  NIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA--LNLEWLDLVGCASLIEIHSSI- 134
            + +L   +  +   ++ LNL+   Q+  I   + A    ++ L +    ++  +   + 
Sbjct: 56  TMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVF 113

Query: 135 QHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEISC-----NIENL 187
           Q++  L  L L R   L SLP GI  N   L  L +    N    +E        +++NL
Sbjct: 114 QNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSN--NNLERIEDDTFQATTSLQNL 170

Query: 188 DLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPE 247
            LS   +  +   +  +  L   +++    L +++       +++ L  S    +  +  
Sbjct: 171 QLSSNRLTHVD--LSLIPSLFHANVSYN-LLSTLA----IPIAVEELDASHN-SINVVRG 222

Query: 248 EI-GNLESLKI---MLANETAISQ--NLVDMSLVDCGITELPE-SLGRSPSLKFLNLAEN 300
            +   L  LK+    L +   +     LV++ L    + ++      +   L+ L ++ N
Sbjct: 223 PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282

Query: 301 DFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLS 350
               +    + +  L  L L +   L  +       N        LE L 
Sbjct: 283 RLVALNLYGQPIPTLKVLDLSHN-HLLHVER-----NQP--QFDRLENLY 324

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 93.6 bits (233), Expect = 9e-21
 Identities = 61/268 (22%), Positives = 92/268 (34%), Gaps = 31/268 (11%)

Query: 69  HLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA--LNLEWLDLVGCA 125
            +  L M  + I  L   V QN+  L  L L     LS +P         L  L +    
Sbjct: 94  TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN- 151

Query: 126 SLIEIHSSI-QHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNI 184
           +L  I     Q    L  L L     L  +     + SL    +    NL   L I   +
Sbjct: 152 NLERIEDDTFQATTSLQNLQLSSN-RLTHVDLS-LIPSLFHANVSY--NLLSTLAIPIAV 207

Query: 185 ENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEK 244
           E LD S  +I  +   +     L  L L +   L   +  L N   L  + LS   +LEK
Sbjct: 208 EELDASHNSINVVRGPV--NVELTILKLQHN-NLTDTA-WLLNYPGLVEVDLSYN-ELEK 262

Query: 245 LPEEI-GNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFE 303
           +       ++ L+ +      IS N          +  L       P+LK L+L+ N   
Sbjct: 263 IMYHPFVKMQRLERLY-----ISNNR---------LVALNLYGQPIPTLKVLDLSHNHLL 308

Query: 304 KIPSSIKQLSNLLFLTLQNCKRLQSLPE 331
            +  +  Q   L  L L +   + +L  
Sbjct: 309 HVERNQPQFDRLENLYLDHN-SIVTLKL 335

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 82.4 bits (204), Expect = 4e-17
 Identities = 48/261 (18%), Positives = 102/261 (39%), Gaps = 33/261 (12%)

Query: 69  HLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASL 127
            L +L M ++N+E++ +   Q   +L+ L LS   +L+ +    +  +L   ++    S 
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIP-SLFHANV----SY 195

Query: 128 IEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGC--SNLKRFLEISCNIE 185
             + S++     +  L+     S+  +   +    L +L L     ++    L     + 
Sbjct: 196 NLL-STLAIPIAVEELDASHN-SINVVRGPV-NVELTILKLQHNNLTDTAWLLNYP-GLV 251

Query: 186 NLDLSETAIEELPSSI-GNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEK 244
            +DLS   +E++       + RL RL ++N +RL +++     + +L+ L LS    L  
Sbjct: 252 EVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLH 309

Query: 245 LPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEK 304
           +       + L+ +               L    I  L  S     +LK L L+ ND++ 
Sbjct: 310 VERNQPQFDRLENL--------------YLDHNSIVTLKLST--HHTLKNLTLSHNDWDC 353

Query: 305 IPSSIKQLSNLLFLTLQNCKR 325
                    N+    + +  +
Sbjct: 354 NSLR-ALFRNVARPAVDDADQ 373

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.1 bits (172), Expect = 5e-13
 Identities = 34/232 (14%), Positives = 89/232 (38%), Gaps = 28/232 (12%)

Query: 183 NIENLDLSETAIEELPSSI-GNLSRLVRLDLTNCSRLKSVS-NSLCNLKSLQYLFLSGCL 240
           N + +    + + +LP+++  +  ++  L+L +  +++ +   +     ++Q L++    
Sbjct: 46  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN- 103

Query: 241 KLEKLPEEI-GNLESLKIMLANETAISQ----------NLVDMSLVDCGITELPESLGRS 289
            +  LP  +  N+  L +++     +S            L  +S+ +  +  + +   ++
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163

Query: 290 -PSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYC--TSL 346
             SL+ L L+ N    +  S   + +L    +     L +L        + A +     +
Sbjct: 164 TTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYN-LLSTLAIPIAVEELDASHNSINVV 220

Query: 347 E--TLSNLSTLFTRSSELWQAFDFCNCFKL-----NRNEIGEIVDGALKKIQ 391
                  L+ L  + + L       N   L     + NE+ +I+     K+Q
Sbjct: 221 RGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 30/219 (13%), Positives = 73/219 (33%), Gaps = 44/219 (20%)

Query: 186 NLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKL 245
           N+   +   + + S++        + +   ++          L + + +       + KL
Sbjct: 2   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKL 60

Query: 246 PEEI-GNLESLKIMLANETAISQ----------NLVDMSLVDCGITELPESLGRS-PSLK 293
           P  +  +   ++++  N+  I +           +  + +    I  LP  + ++ P L 
Sbjct: 61  PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120

Query: 294 FLNLAENDFEKIPSSI-KQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNL 352
            L L  ND   +P  I      L  L++ N   L+ + +     + F +  TSL+ L   
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIED-----DTF-QATTSLQNL--- 170

Query: 353 STLFTRSSELWQAFDFCNCFKLNRNEIGEIVDGALKKIQ 391
                               +L+ N +  +    +  + 
Sbjct: 171 --------------------QLSSNRLTHVDLSLIPSLF 189

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 95.0 bits (236), Expect = 1e-20
 Identities = 51/300 (17%), Positives = 110/300 (36%), Gaps = 39/300 (13%)

Query: 69  HLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA--LNLEWLDLVGCA 125
           +   +   +S + +L   +  +   ++ LNL+   Q+  I   + A    ++ L +    
Sbjct: 52  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN- 109

Query: 126 SLIEIHSSI-QHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEISC 182
           ++  +   + Q++  L  L L R   L SLP GI  N   L  L +    N    +E   
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSN--NNLERIEDDT 166

Query: 183 -----NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLS 237
                +++NL LS   +  +   +  +  L   +++    L +++       +++ L  S
Sbjct: 167 FQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN-LLSTLA----IPIAVEELDAS 219

Query: 238 GCLKLEKLPEEI-GNLESLKI---MLANETAISQ--NLVDMSLVDCGITELPE-SLGRSP 290
               +  +   +   L  LK+    L +   +     LV++ L    + ++      +  
Sbjct: 220 HN-SINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278

Query: 291 SLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLS 350
            L+ L ++ N    +    + +  L  L L +   L  +       N        LE L 
Sbjct: 279 RLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVER-----NQP--QFDRLENLY 330

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 93.8 bits (233), Expect = 3e-20
 Identities = 58/267 (21%), Positives = 90/267 (33%), Gaps = 29/267 (10%)

Query: 69  HLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA--LNLEWLDLVGCA 125
            +  L M  + I  L   V QN+  L  L L     LS +P         L  L +    
Sbjct: 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN- 157

Query: 126 SLIEIHSSI-QHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNI 184
           +L  I     Q    L  L L     L  +     + SL    +    NL   L I   +
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSN-RLTHVDLS-LIPSLFHANVSY--NLLSTLAIPIAV 213

Query: 185 ENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEK 244
           E LD S  +I  +   +     L  L L +   L   +  L N   L  + LS   +LEK
Sbjct: 214 EELDASHNSINVVRGPV--NVELTILKLQHN-NLTDTA-WLLNYPGLVEVDLSYN-ELEK 268

Query: 245 LPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEK 304
           +         ++            L  + + +  +  L       P+LK L+L+ N    
Sbjct: 269 IMYHP--FVKMQ-----------RLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH 315

Query: 305 IPSSIKQLSNLLFLTLQNCKRLQSLPE 331
           +  +  Q   L  L L +   + +L  
Sbjct: 316 VERNQPQFDRLENLYLDHN-SIVTLKL 341

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 69.6 bits (170), Expect = 1e-12
 Identities = 33/230 (14%), Positives = 87/230 (37%), Gaps = 28/230 (12%)

Query: 183 NIENLDLSETAIEELPSSI-GNLSRLVRLDLTNCSRLKSV-SNSLCNLKSLQYLFLSGCL 240
           N + +    + + +LP+++  +  ++  L+L +  +++ + + +     ++Q L++    
Sbjct: 52  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN- 109

Query: 241 KLEKLPEEI-GNLESLKIMLANETAISQ----------NLVDMSLVDCGITELPESLGRS 289
            +  LP  +  N+  L +++     +S            L  +S+ +  +  + +   ++
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 169

Query: 290 -PSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYC--TSL 346
             SL+ L L+ N    +  S   + +L    +     L +L        + A +     +
Sbjct: 170 TTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYN-LLSTLAIPIAVEELDASHNSINVV 226

Query: 347 E--TLSNLSTLFTRSSELWQAFDFCNCFKLN-----RNEIGEIVDGALKK 389
                  L+ L  + + L       N   L       NE+ +I+     K
Sbjct: 227 RGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 30/181 (16%), Positives = 67/181 (37%), Gaps = 22/181 (12%)

Query: 186 NLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKL 245
           N+   +   + + S++        + +   ++          L + + +       + KL
Sbjct: 8   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKL 66

Query: 246 PEEI-GNLESLKIMLANETAISQ----------NLVDMSLVDCGITELPESLGRS-PSLK 293
           P  +  +   ++++  N+  I +           +  + +    I  LP  + ++ P L 
Sbjct: 67  PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126

Query: 294 FLNLAENDFEKIPSSI-KQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNL 352
            L L  ND   +P  I      L  L++ N   L+ + +     + F +  TSL+ L  L
Sbjct: 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIED-----DTF-QATTSLQNL-QL 178

Query: 353 S 353
           S
Sbjct: 179 S 179

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 90.1 bits (224), Expect = 5e-20
 Identities = 52/244 (21%), Positives = 96/244 (39%), Gaps = 21/244 (8%)

Query: 89  NLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRC 148
            LA   ++       ++     +    +  L   G    +     +Q+LN L+ L L   
Sbjct: 17  ALANAIKIAAGKS-NVTDTVTQADLDGITTLSAFGT--GVTTIEGVQYLNNLIGLELKDN 73

Query: 149 ISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISC--NIENLDLSETAIEELPSSIGNLSR 206
             +  L    NL  +  L L G   LK    I+   +I+ LDL+ T I ++ + +  LS 
Sbjct: 74  -QITDLAPLKNLTKITELELSGN-PLKNVSAIAGLQSIKTLDLTSTQITDV-TPLAGLSN 130

Query: 207 LVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAIS 266
           L  L L    ++ ++S  L  L +LQYL +    ++  L   + NL  L  + A++  IS
Sbjct: 131 LQVLYLDLN-QITNISP-LAGLTNLQYLSIGNA-QVSDL-TPLANLSKLTTLKADDNKIS 186

Query: 267 --------QNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFL 318
                    NL+++ L +  I+++   L  + +L  + L        P        +  +
Sbjct: 187 DISPLASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNV 245

Query: 319 TLQN 322
               
Sbjct: 246 VKGP 249

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 87.4 bits (217), Expect = 6e-19
 Identities = 60/319 (18%), Positives = 120/319 (37%), Gaps = 47/319 (14%)

Query: 25  NSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLW 84
             FPE+ + +     C       LR  Q     L+ +P  ++P     L++ ++ I ++ 
Sbjct: 10  EHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIK 68

Query: 85  NGV-QNLAALKRLNLSYCKQLSRIPDLSLA--LNLEWLDLVGCASLIEIHSSIQHLNKLV 141
           +G  +NL  L  L L    ++S+I   + A  + LE L L     L E+   +     L 
Sbjct: 69  DGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN-QLKELPEKM--PKTLQ 124

Query: 142 FLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEIS-------CNIENLDLSET 192
            L +     +  +   +   L+ + V+ LG  +N  +   I          +  + +++T
Sbjct: 125 ELRVHEN-EITKVRKSVFNGLNQMIVVELG--TNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 193 AIEELPSSIGNLSRLVRLDLTNCSRLKSVS-NSLCNLKSLQYLFLSGCLKLEKLPEEI-G 250
            I  +P   G    L  L L    ++  V   SL  L +L  L LS    +  +      
Sbjct: 182 NITTIPQ--GLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLA 237

Query: 251 NLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSS-- 308
           N   L+              ++ L +  + ++P  L     ++ + L  N+   I S+  
Sbjct: 238 NTPHLR--------------ELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283

Query: 309 -----IKQLSNLLFLTLQN 322
                  + ++   ++L +
Sbjct: 284 CPPGYNTKKASYSGVSLFS 302

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 88.9 bits (221), Expect = 8e-19
 Identities = 59/276 (21%), Positives = 100/276 (36%), Gaps = 38/276 (13%)

Query: 88  QNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGR 147
             LA +  ++L+    +  + D+      + L ++ C  L +  +    L  L  L L  
Sbjct: 282 HCLANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRC-QLKQFPT--LDLPFLKSLTLTM 337

Query: 148 CISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISC------NIENLDLSETAIEELPSSI 201
                     + L SL  L L     L      S       ++ +LDLS      + ++ 
Sbjct: 338 N-KGSISFKKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF 395

Query: 202 GNLSRLVRLDLTNCSRLKSVSN--SLCNLKSLQYLFLSGCLKLEKLPEEI-GNLESLKIM 258
             L  L  LD  + S LK V+   +  +L+ L YL +S     +   + I   L SL  +
Sbjct: 396 MGLEELQHLDFQH-STLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTL 453

Query: 259 LANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIP-SSIKQLSNLLF 317
                 ++ N    S  D     L      + +L FL+L++   E+I       L  L  
Sbjct: 454 K-----MAGN----SFKDNT---LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQL 501

Query: 318 LTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLS 353
           L + +   L  L       + +     SL TL + S
Sbjct: 502 LNMSHN-NLLFLDS-----SHY-NQLYSLSTL-DCS 529

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 88.6 bits (220), Expect = 1e-18
 Identities = 58/365 (15%), Positives = 119/365 (32%), Gaps = 85/365 (23%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLALNL 116
           L  +P  +IP    ++++  + ++ L +    N + L+ L+LS C ++  I D       
Sbjct: 23  LSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIED------- 73

Query: 117 EWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKR 176
                           +   L+ L  L L     ++S   G            G ++L+ 
Sbjct: 74  ---------------KAWHGLHHLSNLILTGN-PIQSFSPGS---------FSGLTSLEN 108

Query: 177 FLEISCNIENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVS--NSLCNLKSLQY 233
                     L   ET +  L S  IG L  L +L++ +   + S        NL +L +
Sbjct: 109 ----------LVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVH 157

Query: 234 LFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLK 293
           + LS    ++ +             L       Q  + + +    I  + +   +   L 
Sbjct: 158 VDLSYN-YIQTITVN---------DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLH 207

Query: 294 FLNLAENDF--EKIPSSIKQLSNLLFLTLQNCKR-------------LQSLPELPC---- 334
            L L  N      + + ++ L+ L    L   +              ++ L ++      
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 335 --GSNIFARYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKL-----NRNEIGEIVDGAL 387
              +N F+        L+N+S +      +    D    FK       R ++ +     L
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDL 327

Query: 388 KKIQV 392
             ++ 
Sbjct: 328 PFLKS 332

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 87.8 bits (218), Expect = 2e-18
 Identities = 65/278 (23%), Positives = 99/278 (35%), Gaps = 33/278 (11%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLE 117
           +K L          SL +    ++Q      +L  LK L L+  K  S         +L 
Sbjct: 297 IKYLEDVPKHFKWQSLSIIRCQLKQF--PTLDLPFLKSLTLTMNK-GSISFKKVALPSLS 353

Query: 118 WLDLVGCA--SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNL 174
           +LDL   A         S    N L  L+L        +      L+ L+ L     S L
Sbjct: 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQH-STL 411

Query: 175 KRFLEISC-----NIENLDLSETAIEELPSSI-GNLSRLVRLDLTNCSRLKSV-SNSLCN 227
           KR  E S       +  LD+S T  +     I   L+ L  L +   S   +  SN   N
Sbjct: 412 KRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471

Query: 228 LKSLQYLFLSGCLKLEKLPEEI-GNLESLKIMLANETAISQNLVDMSLVDCGITELPES- 285
             +L +L LS C +LE++   +   L  L+++      +S N          +  L  S 
Sbjct: 472 TTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLN-----MSHNN---------LLFLDSSH 516

Query: 286 LGRSPSLKFLNLAENDFEKIPSSI-KQLSNLLFLTLQN 322
             +  SL  L+ + N  E     +     +L F  L N
Sbjct: 517 YNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.4 bits (191), Expect = 4e-15
 Identities = 56/295 (18%), Positives = 99/295 (33%), Gaps = 41/295 (13%)

Query: 88  QNLAALKRLNLSYCKQLSRIPDLSLA------LNLEWLDLVGCASLIEIHSSIQHLNKLV 141
            NL  L  ++LSY   +  I    L            LD+     +  I        KL 
Sbjct: 150 SNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDMSLN-PIDFIQDQAFQGIKLH 207

Query: 142 FLNLGRCISLKSLPTGI--NLDSLKVLYL-----GGCSNLKRFLE------ISCNIENLD 188
            L L    +  ++      NL  L V  L         NL+ F            I+   
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 189 LSETAIEEL-PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPE 247
           L+ T            L+ +  + L   S +K +   +      Q L +  C +L++ P 
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLE-DVPKHFKWQSLSIIRC-QLKQFPT 324

Query: 248 E-IGNLESL-----KIMLANETAISQNLVDMSLVDCGITELPE---SLGRSPSLKFLNLA 298
             +  L+SL     K  ++ +     +L  + L    ++       S   + SL+ L+L+
Sbjct: 325 LDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384

Query: 299 ENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLS 353
            N    + ++   L  L  L  Q+   L+ + E     +        L  L ++S
Sbjct: 385 FNGAIIMSANFMGLEELQHLDFQHS-TLKRVTEFSAFLS-----LEKLLYL-DIS 432

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 88.6 bits (220), Expect = 9e-19
 Identities = 59/311 (18%), Positives = 114/311 (36%), Gaps = 25/311 (8%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA--L 114
             S+PS  +   + SL++  + I  + +G  +  A L+ L L    +++ I   +     
Sbjct: 17  FTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLG 74

Query: 115 NLEWLDLVGCASLIEIHSS-IQHLNKLVFLNLGRCISLKSLPTGI---NLDSLKVLYLGG 170
           +LE LDL     L  + SS    L+ L +LNL      ++L       NL +L+ L +G 
Sbjct: 75  SLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGN 132

Query: 171 CSNLKRFLEISC----NIENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVSNSL 225
                    I      ++  L++   ++    S S+ ++  +  L L        +    
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA 192

Query: 226 CNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPES 285
             L S++YL L     L +       ++ +   +         L D S     + +L   
Sbjct: 193 DILSSVRYLELR-DTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF--NELLKLLRY 249

Query: 286 LGRSPSLKFLNLAENDFEKI-PSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCT 344
           +     ++F +   N      PS    +S L  +     +RL  +P+      +F    T
Sbjct: 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL-HIPQF----YLFYDLST 304

Query: 345 SLETLSNLSTL 355
               L  +  +
Sbjct: 305 VYSLLEKVKRI 315

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 82.9 bits (205), Expect = 7e-17
 Identities = 58/335 (17%), Positives = 118/335 (35%), Gaps = 43/335 (12%)

Query: 5   IEGISLDMFRMRRLRFFKFY--NSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLP 62
           +  + L    + R +F           M K   R S   +  FNEL         L  + 
Sbjct: 198 VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257

Query: 63  SKNIPEHLVSLEMPHSNIEQLWNGVQ-NLAALKRLNLSYCKQLSRIPD-LSLALNLEWLD 120
             +        +   S  + +    +     ++RL++        +    SL   ++ + 
Sbjct: 258 FDDCT-LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316

Query: 121 LVGCASLIEIHSSI-QHLNKLVFLNLGR-CISLKSLPTGI---NLDSLKVLYLGGCSNLK 175
           +     +  +  S  QHL  L FL+L    +  + L          SL+ L L    N  
Sbjct: 317 VENS-KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ--NHL 373

Query: 176 RFLEISC-------NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNL 228
           R ++ +        N+ +LD+S      +P S     ++  L+L++   ++ V    C  
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKT--CIP 430

Query: 229 KSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGR 288
           ++L+ L +S    L+     +  L+ L                  +    +  LP++   
Sbjct: 431 QTLEVLDVSNN-NLDSFSLFLPRLQEL-----------------YISRNKLKTLPDA-SL 471

Query: 289 SPSLKFLNLAENDFEKIPSSI-KQLSNLLFLTLQN 322
            P L  + ++ N  + +P  I  +L++L  + L  
Sbjct: 472 FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 46/289 (15%), Positives = 97/289 (33%), Gaps = 36/289 (12%)

Query: 88  QNLAALKRLNLSYCKQLSRIPDLSLA--LNLEWLDLVGCASLIEIHS-SIQHLNKLVFLN 144
            NL  L+ L +   +  S I  +  A   +L  L++    SL    S S++ +  +  L 
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLT 178

Query: 145 LGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEI-----------SCNIENLDLSE 191
           L        L       L S++ L L   +  +                        L++
Sbjct: 179 LHLS-ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 192 TAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGN 251
            +  EL   +  +  L  ++  +C+       +      +  L     + + +L     +
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL-----H 292

Query: 252 LESLKIMLANETAISQ--NLVDMSLVDCGITELPESLGRS-PSLKFLNLAENDFEKI--- 305
           +    +     T  S    +  +++ +  +  +P S  +   SL+FL+L+EN   +    
Sbjct: 293 IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK 352

Query: 306 -PSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLS 353
             +      +L  L L        L  +     I      +L +L ++S
Sbjct: 353 NSACKGAWPSLQTLVLSQNH----LRSMQKTGEILLTL-KNLTSL-DIS 395

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 39/283 (13%), Positives = 104/283 (36%), Gaps = 26/283 (9%)

Query: 69  HLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLAL--NLEWLDLVGCA 125
            L  LE+   ++    +   +++  +  L L    + + + ++   +  ++ +L+L    
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDT- 206

Query: 126 SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCN-I 184
           +L     S   ++++             L      + LK+L      +   F + + N +
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266

Query: 185 ENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEK 244
            + + SE+ +      +  ++ + RL +        +S     L+ ++ + +    K+  
Sbjct: 267 GDFNPSESDVVSELGKVETVT-IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFL 324

Query: 245 LPEEIG----NLESL--------KIMLANETAISQ--NLVDMSLVDCGITELPESLG--- 287
           +P        +LE L        +  L N        +L  + L    +  + ++     
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384

Query: 288 RSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLP 330
              +L  L+++ N F  +P S +    + FL L +   ++ + 
Sbjct: 385 TLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVK 426

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 47/230 (20%), Positives = 81/230 (35%), Gaps = 34/230 (14%)

Query: 179 EISCNIENLDLSETAIEELP-SSIGNLSRLVRLDLTNCSRLKSV-SNSLCNLKSLQYLFL 236
            ++  +++LDLS   I  +    +   + L  L L +  R+ ++  ++  +L SL++L L
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDL 81

Query: 237 SGCLKLEKLPEE-IGNLESLK-----------IMLANETAISQNLVDMSLVDC-GITELP 283
           S    L  L     G L SLK           + + +      NL  + + +    +E+ 
Sbjct: 82  SDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140

Query: 284 E-SLGRSPSLKFLNLAENDFEKIPS-SIKQLSNLLFLTLQNCK----------RLQSLPE 331
                   SL  L +         S S+K + ++  LTL   +           L S+  
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRY 200

Query: 332 LP----CGSNIFARYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKLNRN 377
           L       +          E  S +  L  R S L     F    KL R 
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL-TDESFNELLKLLRY 249

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 83.9 bits (208), Expect = 2e-18
 Identities = 35/215 (16%), Positives = 77/215 (35%), Gaps = 19/215 (8%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA--L 114
           ++ +PS  +P    +L++  +++  + +    NL  + R+ +S    L ++   S     
Sbjct: 23  IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS 80

Query: 115 NLEWLDLVGCASLIEIHSSI-QHLNKLVFLNLGRCISLKSLPTGI---NLDSLKVLYLGG 170
            +  +++    +L  I     + L  L FL +     LK  P      + D   +L +  
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITD 139

Query: 171 CSNLKR-----FLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVS-NS 224
              +       F  +      L L       +     N ++L  + L     L  +  ++
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDA 199

Query: 225 LCNLKS-LQYLFLSGCLKLEKLPEEI-GNLESLKI 257
              + S    L +S    +  LP +   +L+ L  
Sbjct: 200 FGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIA 233

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 73.1 bits (180), Expect = 8e-15
 Identities = 37/206 (17%), Positives = 76/206 (36%), Gaps = 26/206 (12%)

Query: 171 CSNLKRFLEISCNIENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSV-SNSLCNL 228
           C +++R   +  + + L L ET +  +PS +  NL  + R+ ++    L+ + S+S  NL
Sbjct: 20  CKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL 79

Query: 229 KSLQYLFLSGCLKLEKLPEEI----GNLESLKI------MLANETAISQNLVDMSLVDCG 278
             + ++ +     L  +  +       L+ L I      M  + T +    +   L    
Sbjct: 80  SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITD 139

Query: 279 ---ITELPESL--GRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELP 333
              +T +P +   G       L L  N F  +       + L  + L   K L  + +  
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK-- 197

Query: 334 CGSNIFARYCTSLETLS----NLSTL 355
              + F    +    L     +++ L
Sbjct: 198 ---DAFGGVYSGPSLLDVSQTSVTAL 220

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 87.1 bits (215), Expect = 3e-18
 Identities = 38/205 (18%), Positives = 80/205 (39%), Gaps = 13/205 (6%)

Query: 68  EHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASL 127
              +   +   ++         L ++ ++  +    +  +  +    N+  L L G   L
Sbjct: 21  AETIKDNLKKKSVTDA-VTQNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGN-KL 77

Query: 128 IEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGC--SNLKRFLEISCNIE 185
            +I   + +L  L +L L     +K L +  +L  LK L L     S++   L     +E
Sbjct: 78  TDI-KPLTNLKNLGWLFLDEN-KIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLE 134

Query: 186 NLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKL 245
           +L L    I ++ + +  L++L  L L +  ++  +   L  L  LQ L+LS    +  L
Sbjct: 135 SLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDL 190

Query: 246 PEEIGNLESLKIMLANETAISQNLV 270
              +  L++L ++           +
Sbjct: 191 -RALAGLKNLDVLELFSQECLNKPI 214

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.8 bits (209), Expect = 2e-17
 Identities = 65/407 (15%), Positives = 119/407 (29%), Gaps = 70/407 (17%)

Query: 132 SSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISC--NIENLDL 189
                  + +  NL +  S+    T   L+S+  +      ++K    I    N+  L L
Sbjct: 15  FPDDAFAETIKDNLKKK-SVTDAVTQNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFL 72

Query: 190 SETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEI 249
           +   + ++   + NL  L  L L    ++K +S+ L +LK L+ L L            I
Sbjct: 73  NGNKLTDI-KPLTNLKNLGWLFLDEN-KIKDLSS-LKDLKKLKSLSLEHN--------GI 121

Query: 250 GNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSI 309
            ++  L  +          L  + L +  IT++   L R   L  L+L +N    I   +
Sbjct: 122 SDINGLVHL--------PQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-VPL 171

Query: 310 KQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSELWQAFDFC 369
             L+ L  L L     +  L                L  L NL  L              
Sbjct: 172 AGLTKLQNLYLSKNH-ISDLRA--------------LAGLKNLDVL-------------- 202

Query: 370 NCFKLNRNEIGEIVDGALKKIQVMATWWK---QQDPVTLYEDYHNPPRGCVSYPGSEIPE 426
              +L   E           + V  T            +  D  +  +  V +   E   
Sbjct: 203 ---ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTN 259

Query: 427 WFSYQSMGSSVTLELPPGWVNNNFVGFALCAIVPDHHGDTRGFTVRCILKTKDDIAVCFL 486
             S+               +      F      P     T  + V   +      A   +
Sbjct: 260 EVSFIFYQPVT--------IGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRI 311

Query: 487 YVWEDYF--GVNSSIESDHVLLGYDFSVSSDSFGGSNSEFCIQFYIQ 531
              +     G            G++++ ++D   G++      F  +
Sbjct: 312 TAPKPPTKQGYVFKGWYTEKNGGHEWNFNTDYMSGNDFTLYAVFKAE 358

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 86.3 bits (214), Expect = 4e-18
 Identities = 60/274 (21%), Positives = 104/274 (37%), Gaps = 49/274 (17%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA--L 114
           L  +P   IP +   L +  +NI+ +     ++L  L+ L L     + +I   +     
Sbjct: 66  LSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLA 123

Query: 115 NLEWLDLVGCASLIEIHSSI-QHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGC 171
           +L  L+L     L  I S   ++L+KL  L L     ++S+P+     + SL  L LG  
Sbjct: 124 SLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGEL 181

Query: 172 SNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSL 231
             L                   I     +   L  L  L+L  C  +K +  +L  L  L
Sbjct: 182 KKL-----------------EYIS--EGAFEGLFNLKYLNLGMC-NIKDM-PNLTPLVGL 220

Query: 232 QYLFLSGCLKLEKLPEE-IGNLESLKIMLANETAISQNLVDMSLVDCGITELPE-SLGRS 289
           + L +SG     ++       L SLK +               +++  ++ +   +    
Sbjct: 221 EELEMSGN-HFPEIRPGSFHGLSSLKKL--------------WVMNSQVSLIERNAFDGL 265

Query: 290 PSLKFLNLAENDFEKIPSSI-KQLSNLLFLTLQN 322
            SL  LNLA N+   +P  +   L  L+ L L +
Sbjct: 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 39/223 (17%), Positives = 73/223 (32%), Gaps = 48/223 (21%)

Query: 180 ISCNIENLDLSETAIEELPSSI-GNLSRLVRLDLTNCSRLKSVS-NSLCNLKSLQYLFLS 237
           I  N   L+L E  I+ + +    +L  L  L L     ++ +   +   L SL  L L 
Sbjct: 73  IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELF 131

Query: 238 GCLKLEKLPEEI-GNLESLKIMLANETAIS----------QNLVDMSLVDCG-ITELPE- 284
               L  +P      L  L+ +      I            +L+ + L +   +  + E 
Sbjct: 132 DN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190

Query: 285 SLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCT 344
           +     +LK+LNL   + + +P ++  L  L  L +        +         F     
Sbjct: 191 AFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGN-HFPEIRP-----GSFHG--- 240

Query: 345 SLETLSNLSTLFTRSSELWQAFDFCNCFKLNRNEIGEIVDGAL 387
               LS+L  L+                 +  +++  I   A 
Sbjct: 241 ----LSSLKKLW-----------------VMNSQVSLIERNAF 262

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.3 bits (209), Expect = 4e-18
 Identities = 66/275 (24%), Positives = 106/275 (38%), Gaps = 46/275 (16%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLAL-- 114
           L S+P+  IP     LE+  + ++ L +GV   L  L +L+LS    LS     S +   
Sbjct: 19  LTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFG 76

Query: 115 --NLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCS 172
             +L++LDL     +I + S+   L +L  L+     +LK +       SL         
Sbjct: 77  TTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSL--------R 126

Query: 173 NLKRFLEISCNIENLDLSETAIEELPSSI-GNLSRLVRLDLTNCSRLKSV-SNSLCNLKS 230
           NL            LD+S T      + I   LS L  L +   S  ++   +    L++
Sbjct: 127 NLIY----------LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176

Query: 231 LQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRS- 289
           L +L LS C +LE+L        SL            +L  +++       L     +  
Sbjct: 177 LTFLDLSQC-QLEQLSPTA--FNSL-----------SSLQVLNMSHNNFFSLDTFPYKCL 222

Query: 290 PSLKFLNLAENDFEKIPSSIKQ--LSNLLFLTLQN 322
            SL+ L+ + N          Q   S+L FL L  
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 40/223 (17%), Positives = 73/223 (32%), Gaps = 42/223 (18%)

Query: 180 ISCNIENLDLSETAIEELPSSI-GNLSRLVRLDLTNC--SRLKSVSNSLCNLKSLQYLFL 236
           I  +   L+L    ++ LP  +   L++L +L L++   S     S S     SL+YL L
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85

Query: 237 SGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPES--LGRSPSLKF 294
           S    +  +      LE L+               +      + ++ E        +L +
Sbjct: 86  SFN-GVITMSSNFLGLEQLEH--------------LDFQHSNLKQMSEFSVFLSLRNLIY 130

Query: 295 LNLAENDFEKIPSSI-KQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLS--- 350
           L+++        + I   LS+L  L +      ++        +IF     +L  L    
Sbjct: 131 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP-----DIFTE-LRNLTFLDLSQ 184

Query: 351 -NLSTL----FTRSSELWQAFDFCNCFKLNRNEIGEIVDGALK 388
             L  L    F   S L           ++ N    +     K
Sbjct: 185 CQLEQLSPTAFNSLSSLQV-------LNMSHNNFFSLDTFPYK 220

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 11/121 (9%)

Query: 57  PLKSLPSKNIPEHLVSLE---MPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSL 112
            LK +   ++   L +L    + H++    +NG+   L++L+ L ++             
Sbjct: 112 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171

Query: 113 AL--NLEWLDLVGCASLIEIHSSI-QHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLY 167
               NL +LDL  C  L ++  +    L+ L  LN+    +  SL T     L+SL+VL 
Sbjct: 172 TELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLD 229

Query: 168 L 168
            
Sbjct: 230 Y 230

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 49/180 (27%)

Query: 181 SCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSV-SNSLCNLKSLQYLFLSGC 239
           SC+   +  +   +  +P+ I   S   RL+L +  +L+S+       L  L  L LS  
Sbjct: 6   SCSGTEIRCNSKGLTSVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSN 62

Query: 240 LKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAE 299
             L        +                                       SLK+L+L+ 
Sbjct: 63  -GLSFKGCCSQSDFGT----------------------------------TSLKYLDLSF 87

Query: 300 NDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLS----NLSTL 355
           N    + S+   L  L  L  Q+   L+ + E     ++F     +L  L     +    
Sbjct: 88  NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSE----FSVF-LSLRNLIYLDISHTHTRVA 141

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 86.3 bits (214), Expect = 4e-18
 Identities = 40/283 (14%), Positives = 85/283 (30%), Gaps = 36/283 (12%)

Query: 87  VQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLG 146
            + LA L  L+      ++ +  +     L  L      ++  +   +     L +L   
Sbjct: 38  EEQLATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSN-NITTL--DLSQNTNLTYLACD 93

Query: 147 RCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSR 206
               L +L     L  L  L        K  +  +  +  L+ +   + E+   + + ++
Sbjct: 94  SN-KLTNLDVT-PLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID--VSHNTQ 149

Query: 207 LVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAIS 266
           L  LD     ++  +   +     L  L  S   K+ +L   +   + L  +  +   I+
Sbjct: 150 LTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTNNIT 204

Query: 267 -------QNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLT 319
                    L  +      +TE+   +     L + + + N   ++  S   LS L  L 
Sbjct: 205 KLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVS--TLSKLTTLH 260

Query: 320 LQNCK-------RLQSLPELPCGSN-----IFARYCTSLETLS 350
                           L             +   + T L  L 
Sbjct: 261 CIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD 303

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 82.8 bits (205), Expect = 4e-17
 Identities = 56/323 (17%), Positives = 109/323 (33%), Gaps = 47/323 (14%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLE 117
             ++  + +   L SL+  +S+I  +  G++ L  L +L  +    ++ + DLS   NL 
Sbjct: 33  TDTISEEQLA-TLTSLDCHNSSITDM-TGIEKLTGLTKLICTSN-NITTL-DLSQNTNLT 88

Query: 118 WLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRF 177
           +L       L  +   +  L KL +LN      L  L        L  L      N    
Sbjct: 89  YLACDSN-KLTNL--DVTPLTKLTYLNCDTN-KLTKLDVS-QNPLLTYLNCAR--NTLTE 141

Query: 178 LEISC--NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLF 235
           +++S    +  LD            +   ++L  LD +   ++  +   +   K L  L 
Sbjct: 142 IDVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFN-KITEL--DVSQNKLLNRLN 197

Query: 236 LSGCLKLEKLPEEIGNLESLKIMLANETAIS-------QNLVDMSLVDCGITELPESLGR 288
                 + KL   +     L  +  +   ++         L         +TEL  S   
Sbjct: 198 CDTN-NITKLD--LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVST-- 252

Query: 289 SPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLP--------ELPCGSN--- 337
              L  L+  + D  +I   +   + L++   + C++++ L          L C +    
Sbjct: 253 LSKLTTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT 310

Query: 338 -IFARYCTSLETLS----NLSTL 355
            +       L  L      L+ L
Sbjct: 311 ELDLSQNPKLVYLYLNNTELTEL 333

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 75.5 bits (186), Expect = 1e-14
 Identities = 57/324 (17%), Positives = 109/324 (33%), Gaps = 54/324 (16%)

Query: 43  SFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCK 102
           S   +L           +         L +L+   + I +L   V     L RLN     
Sbjct: 145 SHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL--DVSQNKLLNRLNCDTN- 201

Query: 103 QLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDS 162
            ++++ DL+  + L +LD                 NKL  +++     L       +   
Sbjct: 202 NITKL-DLNQNIQLTFLDCSS--------------NKLTEIDVTPLTQLTYF----DCSV 242

Query: 163 --LKVLYLGGCSNLKRFLEISCNIENLDLSE-TAIEELPSSIGNLSRLVRLDLTNCSRLK 219
             L  L +   S L     I  ++  +DL+  T +           ++  LD+T+ ++L 
Sbjct: 243 NPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF--QAEGCRKIKELDVTHNTQLY 300

Query: 220 SVSNS--------LCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVD 271
            +           L     L YL+L+   +L +L   + +                 L  
Sbjct: 301 LLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHN--------------TKLKS 343

Query: 272 MSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNL-LFLTLQNCKRLQSLP 330
           +S V+  I +    +G+ P+L     AE     +P      ++L + ++     +  +  
Sbjct: 344 LSCVNAHIQDFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPM 402

Query: 331 ELPCGSNIFARYCTSLETLSNLST 354
            +  G        T+  T  NLST
Sbjct: 403 NIEPGDGGVYDQATNTITWENLST 426

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 34/191 (17%), Positives = 54/191 (28%), Gaps = 44/191 (23%)

Query: 172 SNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSL 231
            N    +  +  ++  D           S   L+ L  LD  N   +  ++  +  L  L
Sbjct: 18  DNFASEVAAAFEMQATD---------TISEEQLATLTSLDCHNS-SITDMTG-IEKLTGL 66

Query: 232 QYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPS 291
             L  +    +  L   +                  NL  ++     +T L   +     
Sbjct: 67  TKLICTSN-NITTLD--LSQN--------------TNLTYLACDSNKLTNLD--VTPLTK 107

Query: 292 LKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCK-------RLQSLPELPCGSN-----IF 339
           L +LN   N   K+  S  Q   L +L                 L EL C  N     + 
Sbjct: 108 LTYLNCDTNKLTKLDVS--QNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD 165

Query: 340 ARYCTSLETLS 350
               T L TL 
Sbjct: 166 VTPQTQLTTLD 176

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.8 bits (210), Expect = 5e-18
 Identities = 69/303 (22%), Positives = 121/303 (39%), Gaps = 48/303 (15%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA--L 114
           L S+PS  + E + SL++ ++ I  + N   Q    L+ L L+    ++ I + S +   
Sbjct: 43  LNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLG 100

Query: 115 NLEWLDLVGCASLIEIHSSI-QHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSN 173
           +LE LDL     L  + SS  + L+ L FLNL      K+L        L  L +    N
Sbjct: 101 SLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGN 158

Query: 174 LKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVS-NSLCNLKSLQ 232
           +  F +I                       L+ L  L++     L+S    SL +++++ 
Sbjct: 159 MDTFTKIQ----------------RKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVS 201

Query: 233 YLFLSGCLKLEKLPEEI-GNLESLKIMLANETAISQNLVDMSLVDCGITELPE----SLG 287
           +L L    +   L E       S++            L D  L     +EL      SL 
Sbjct: 202 HLILHM-KQHILLLEIFVDVTSSVE---------CLELRDTDLDTFHFSELSTGETNSLI 251

Query: 288 RSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLE 347
           +  + + + + +    ++   + Q+S LL L      +L+S+P+      IF R  TSL+
Sbjct: 252 KKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPD-----GIFDRL-TSLQ 304

Query: 348 TLS 350
            + 
Sbjct: 305 KIW 307

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.2 bits (154), Expect = 7e-11
 Identities = 30/168 (17%), Positives = 62/168 (36%), Gaps = 20/168 (11%)

Query: 88  QNLAALKRLNLSYCKQLSRIPDLSLA--LNLEWLDLVGCASLIEI-HSSIQHLNKLVFLN 144
            +L  L+ L +      ++I     A    LE L++     L      S++ +  +  L 
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLI 204

Query: 145 LGRCISLKSLPTGI--NLDSLKVLYLGG-----------CSNLKRFLEISCNIENLDLSE 191
           L        L         S++ L L              +     L       N+ +++
Sbjct: 205 LHMK-QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263

Query: 192 TAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLC-NLKSLQYLFLSG 238
            ++ ++   +  +S L+ L+ +   +LKSV + +   L SLQ ++L  
Sbjct: 264 ESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHT 310

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 85.2 bits (211), Expect = 7e-18
 Identities = 63/273 (23%), Positives = 106/273 (38%), Gaps = 47/273 (17%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA--L 114
           L+ +P   I  +   L +  + I+ +     ++L  L+ L LS    +  I   +     
Sbjct: 55  LREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLA 112

Query: 115 NLEWLDLVGCASLIEIHSSI-QHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGC 171
           NL  L+L     L  I +    +L+KL  L L     ++S+P+     + SL+ L LG  
Sbjct: 113 NLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGEL 170

Query: 172 SNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSL 231
             L              +SE A E        LS L  L+L  C  L+ +  +L  L  L
Sbjct: 171 KRLSY------------ISEGAFE-------GLSNLRYLNLAMC-NLREI-PNLTPLIKL 209

Query: 232 QYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPE-SLGRSP 290
             L LSG   L  +    G+ + L            +L  + ++   I  +   +     
Sbjct: 210 DELDLSGN-HLSAIRP--GSFQGLM-----------HLQKLWMIQSQIQVIERNAFDNLQ 255

Query: 291 SLKFLNLAENDFEKIPSSI-KQLSNLLFLTLQN 322
           SL  +NLA N+   +P  +   L +L  + L +
Sbjct: 256 SLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 53/229 (23%), Positives = 87/229 (37%), Gaps = 46/229 (20%)

Query: 169 GGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSV-SNSLCN 227
             CS   +F ++ C  +NL        E+P  I   +    L+L    +++ +  NS  +
Sbjct: 37  SVCSCSNQFSKVICVRKNLR-------EVPDGI--STNTRLLNLHEN-QIQIIKVNSFKH 86

Query: 228 LKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPE-SL 286
           L+ L+ L LS    +  +    G    L            NL  + L D  +T +P  + 
Sbjct: 87  LRHLEILQLSRN-HIRTIEI--GAFNGLA-----------NLNTLELFDNRLTTIPNGAF 132

Query: 287 GRSPSLKFLNLAENDFEKIPSSI-KQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTS 345
                LK L L  N  E IPS    ++ +L  L L   KRL  + E       F    ++
Sbjct: 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE-----GAFEG-LSN 186

Query: 346 LETLS----NLSTL--FTRSSELWQAFDFCNCFKLNRNEIGEIVDGALK 388
           L  L+    NL  +   T   +L +         L+ N +  I  G+ +
Sbjct: 187 LRYLNLAMCNLREIPNLTPLIKLDE-------LDLSGNHLSAIRPGSFQ 228

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 50/282 (17%), Positives = 110/282 (39%), Gaps = 40/282 (14%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA--L 114
           LK++P   I      L++ +++I +L     + L  L  L L    ++S+I + + +   
Sbjct: 45  LKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLR 102

Query: 115 NLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGG-- 170
            L+ L +     L+EI  ++   + LV L +     ++ +P G+   L ++  + +GG  
Sbjct: 103 KLQKLYISKN-HLVEIPPNL--PSSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNP 158

Query: 171 --CSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVS-NSLCN 227
              S  +        +  L +SE  +  +P        L  L L + ++++++    L  
Sbjct: 159 LENSGFEPGAFDGLKLNYLRISEAKLTGIPK--DLPETLNELHLDH-NKIQAIELEDLLR 215

Query: 228 LKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLG 287
              L  L L    ++  +      L  L             L ++ L +  ++ +P  L 
Sbjct: 216 YSKLYRLGLGHN-QIRMIENGS--LSFLP-----------TLRELHLDNNKLSRVPAGLP 261

Query: 288 RSPSLKFLNLAENDFEKIPSSI-------KQLSNLLFLTLQN 322
               L+ + L  N+  K+  +         + +    ++L N
Sbjct: 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.6 bits (202), Expect = 5e-17
 Identities = 48/267 (17%), Positives = 105/267 (39%), Gaps = 23/267 (8%)

Query: 69  HLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASL 127
           HL +L + ++ I ++       L  L++L +S    L  IP    + +L  L +     +
Sbjct: 79  HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLPS-SLVELRIHDN-RI 135

Query: 128 IEIHSSI-QHLNKLVFLNLGR-CISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISC--N 183
            ++   +   L  +  + +G   +       G   D LK+ YL         +       
Sbjct: 136 RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-FDGLKLNYLRISEAKLTGIPKDLPET 194

Query: 184 IENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVS-NSLCNLKSLQYLFLSGCLK 241
           +  L L    I+ +    +   S+L RL L +  +++ +   SL  L +L+ L L    K
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-K 252

Query: 242 LEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAEND 301
           L ++P  + +L+ L+++      +  N  +++ V            +      ++L  N 
Sbjct: 253 LSRVPAGLPDLKLLQVVY-----LHTN--NITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305

Query: 302 FEKI---PSSIKQLSNLLFLTLQNCKR 325
                  P++ + +++ L +   N K+
Sbjct: 306 VPYWEVQPATFRCVTDRLAIQFGNYKK 332

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.4 bits (121), Expect = 7e-07
 Identities = 38/229 (16%), Positives = 80/229 (34%), Gaps = 43/229 (18%)

Query: 181 SCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVS-NSLCNLKSLQYLFLSGC 239
            C++  +  S+  ++ +P  I        LDL N   +  +  +    L+ L  L L   
Sbjct: 32  HCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNN 88

Query: 240 LKLEKLPEEI-GNLESLKI-MLAN------ETAISQNLVDMSLVDCGITELPE-SLGRSP 290
            K+ K+ E+    L  L+   ++          +  +LV++ + D  I ++P+       
Sbjct: 89  -KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 291 SLKFLNLAENDFEK--IPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLET 348
           ++  + +  N  E             L +L +    +L  +P      ++      +L  
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIP-----KDLP----ETLNE 197

Query: 349 LS----NLSTLFTRSSELWQAFDFCNCFKL-----NRNEIGEIVDGALK 388
           L      +  +        +  D     KL       N+I  I +G+L 
Sbjct: 198 LHLDHNKIQAI--------ELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 81.8 bits (203), Expect = 3e-17
 Identities = 60/291 (20%), Positives = 107/291 (36%), Gaps = 54/291 (18%)

Query: 69  HLVSLEMPHSNIE---QLWNGVQNLAALKRLNLSYCKQLS-RIPD-LSLALNLEWLDLVG 123
            + +L++   N+     + + + NL  L  L +     L   IP  ++    L +L +  
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 124 CASLI-EIHSSIQHLNKLVFLNLGRCISLK-SLPTGI-NLDSLKVLYL------------ 168
             ++   I   +  +  LV L+     +L  +LP  I +L +L  +              
Sbjct: 111 T-NVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 169 -GGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLK-SVSNSLC 226
            G  S L   + IS N   L        ++P +  NL+ L  +DL+    L+   S    
Sbjct: 169 YGSFSKLFTSMTISRN--RL------TGKIPPTFANLN-LAFVDLSRN-MLEGDASVLFG 218

Query: 227 NLKSLQYLFLSGCLKLE-KLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGIT-ELPE 284
           + K+ Q + L+    L   L + +G  ++L  +      +  N          I   LP+
Sbjct: 219 SDKNTQKIHLAKN-SLAFDLGK-VGLSKNLNGL-----DLRNN---------RIYGTLPQ 262

Query: 285 SLGRSPSLKFLNLAENDFE-KIPSSIKQLSNLLFLTLQNCKRLQSLPELPC 334
            L +   L  LN++ N+   +IP     L         N K L   P   C
Sbjct: 263 GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 76.4 bits (189), Expect = 2e-15
 Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 17/130 (13%)

Query: 197 LPSSIGNLSRLVRLDLTNC--SRLKSVSNSLCNLKSLQYLFLSGCLKLE-KLPEEIGNLE 253
           L  +     R+  LDL+     +   + +SL NL  L +L++ G   L   +P  I  L 
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 254 SLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFE-KIPSSIKQL 312
            L  +    T +S           G   +P+ L +  +L  L+ + N     +P SI  L
Sbjct: 102 QLHYLYITHTNVS-----------G--AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 313 SNLLFLTLQN 322
            NL+ +T   
Sbjct: 149 PNLVGITFDG 158

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 71.0 bits (175), Expect = 1e-13
 Identities = 45/243 (18%), Positives = 88/243 (36%), Gaps = 55/243 (22%)

Query: 132 SSIQHLNKLVFLNLGRC-ISL-KSLPTGI-NLDSLKVLYLGGCSNLKRFLEISCNIENLD 188
            +     ++  L+L    +     +P+ + NL  L  LY+GG +NL              
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-------------- 89

Query: 189 LSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLE-KLPE 247
                +  +P +I  L++L  L +T+ +   ++ + L  +K+L  L  S    L   LP 
Sbjct: 90  -----VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPP 143

Query: 248 EIGNLESLKIM--------------LANETAISQNLVDMSLVDCGIT-ELPESLGRSPSL 292
            I +L +L  +                +    S+    M++    +T ++P +     +L
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGS---FSKLFTSMTISRNRLTGKIPPTFANL-NL 199

Query: 293 KFLNLAENDFE-KIPSSIKQLSNLLFLTLQNCKRLQ-SLPELPCGSNIFARYCTSLETLS 350
            F++L+ N  E           N   + L     L   L ++            +L  L 
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLGKV--------GLSKNLNGL- 249

Query: 351 NLS 353
           +L 
Sbjct: 250 DLR 252

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 84.5 bits (209), Expect = 3e-17
 Identities = 64/322 (19%), Positives = 118/322 (36%), Gaps = 34/322 (10%)

Query: 20  FFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSN 79
           F    +     +     H       F+ ++    +      L   +    +  L++ H  
Sbjct: 224 FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN--TFAGLARSS----VRHLDLSHGF 277

Query: 80  IEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA--LNLEWLDLVGCASLIEIHSSI-Q 135
           +  L + V + L  LK LNL+Y  ++++I D +     NL+ L+L     L E++SS   
Sbjct: 278 VFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFY 335

Query: 136 HLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETA 193
            L K+ +++L +   +  +       L+ L+ L L    N    +    +I ++ LS   
Sbjct: 336 GLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDL--RDNALTTIHFIPSIPDIFLSGNK 392

Query: 194 IEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEE--IGN 251
           +  LP      + +  L       L  +   L  +  LQ L L+   +      +     
Sbjct: 393 LVTLPKINLTANLI-HLSENRLENLDILY-FLLRVPHLQILILNQN-RFSSCSGDQTPSE 449

Query: 252 LESLKIMLANETAISQNLVDMSLVDCGITELPESLGRS-PSLKFLNLAENDFEKIPSSI- 309
             SL+ +          L +  L     TEL   +      L+ L L  N    +P  + 
Sbjct: 450 NPSLEQL---------FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVF 500

Query: 310 KQLSNLLFLTLQNCKRLQSLPE 331
             L+ L  L+L +  RL  L  
Sbjct: 501 SHLTALRGLSLNSN-RLTVLSH 521

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 82.9 bits (205), Expect = 1e-16
 Identities = 57/289 (19%), Positives = 107/289 (37%), Gaps = 34/289 (11%)

Query: 88  QNLAALKRLNLSYCKQLSRIPDLSLA--LNLEWLDLVGCASLIEIHS-SIQHLNKLVFLN 144
           Q L   +RL LS+   +  +   S      L+ L+L    + + I   + ++L  L  L+
Sbjct: 21  QVLNTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 145 LGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEISC-----NIENLDLSETAIEEL 197
           LG    +  L       L  L  L L  C      L+         +  LDLS+  I  L
Sbjct: 80  LGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138

Query: 198 P--SSIGNLSRLVRLDLTNCSRLKSVS-NSLCNL--KSLQYLFLSGCLKLEKLPEEIGN- 251
               S G L+ L  +D ++  ++  V  + L  L  K+L +  L+      ++  + G  
Sbjct: 139 YLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

Query: 252 LESLKIMLANETAISQNLVDMSLVDCGITELPE----SLGRSPSLKFLNLAENDFEKIPS 307
           +   + M+     +S N   + +       + +    SL  +  +       ++ +    
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257

Query: 308 SI---KQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLS 353
           +       S++  L L +   + SL      S +F      L+ L NL+
Sbjct: 258 NTFAGLARSSVRHLDLSHG-FVFSLN-----SRVF-ETLKDLKVL-NLA 298

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 80.6 bits (199), Expect = 5e-16
 Identities = 50/263 (19%), Positives = 96/263 (36%), Gaps = 30/263 (11%)

Query: 69  HLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLAL--NLEWLDLVGCA 125
            L  L + ++ I ++ +     L  L+ LNLSY   L  +   +      + ++DL    
Sbjct: 291 DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN- 348

Query: 126 SLIEIHSSI-QHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNI 184
            +  I     + L KL  L+L    +L ++     + S+  ++L G   L    +I+   
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDN-ALTTIH---FIPSIPDIFLSGN-KLVTLPKINLTA 403

Query: 185 ENLDLSETAIEELP--SSIGNLSRLVRLDLTNCSRLKSVSNSLC-NLKSLQYLFLSGC-- 239
             + LSE  +E L     +  +  L  L L          +       SL+ LFL     
Sbjct: 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463

Query: 240 ---LKLEKLPEEIGNLESLKIMLANETAISQ----------NLVDMSLVDCGITELPESL 286
               + E   +    L  L+++  N   ++            L  +SL    +T L  + 
Sbjct: 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523

Query: 287 GRSPSLKFLNLAENDFEKIPSSI 309
               +L+ L+++ N        +
Sbjct: 524 -LPANLEILDISRNQLLAPNPDV 545

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.9 bits (166), Expect = 5e-12
 Identities = 61/314 (19%), Positives = 111/314 (35%), Gaps = 27/314 (8%)

Query: 57  PLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNL 116
            L S  S +  + +      +  +E L             N S     S+   L LA ++
Sbjct: 185 SLYSRVSVDWGKCMNPFR--NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242

Query: 117 EWLDLVGCASLIEIHSSI---QHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGC 171
                    ++ +   +       + +  L+L     + SL + +   L  LKVL L   
Sbjct: 243 MGAGFGF-HNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYN 300

Query: 172 S----NLKRFLEISCNIENLDLSETAIEELPSSI-GNLSRLVRLDLTNCSRLKSVSNSLC 226
                  + F  +  N++ L+LS   + EL SS    L ++  +DL           +  
Sbjct: 301 KINKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359

Query: 227 NLKSLQYLFLSGCL-----KLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITE 281
            L+ LQ L L          +  +P+   +   L  +   +  ++ NL+ +S       +
Sbjct: 360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTL--PKINLTANLIHLSENRLENLD 417

Query: 282 LPESLGRSPSLKFLNLAENDFEKIPSS--IKQLSNLLFLTLQNCKRLQSLPELPCGSNIF 339
           +   L R P L+ L L +N F          +  +L  L L     LQ   E     ++F
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM-LQLAWETELCWDVF 476

Query: 340 ARYCTSLETLSNLS 353
               + L+ L  L+
Sbjct: 477 -EGLSHLQVL-YLN 488

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 29/170 (17%), Positives = 66/170 (38%), Gaps = 24/170 (14%)

Query: 181 SCNIEN--LDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSV-SNSLCNLKSLQYLFLS 237
           SC+ +          + ++P  +       RL L+    +++V ++S   L+ LQ L L 
Sbjct: 1   SCSFDGRIAFYRFCNLTQVPQVLNTTE---RLLLSFN-YIRTVTASSFPFLEQLQLLELG 56

Query: 238 GCLKLEKLPEEI----GNLESLKIMLANETAIS-------QNLVDMSLVDCGITEL---P 283
                  + +E      NL  L +  +    +         +L ++ L  CG+++     
Sbjct: 57  SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 284 ESLGRSPSLKFLNLAENDFEKIP--SSIKQLSNLLFLTLQNCKRLQSLPE 331
                  +L  L+L++N    +    S  +L++L  +   + + +  + E
Sbjct: 117 GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCE 165

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 47/257 (18%), Positives = 93/257 (36%), Gaps = 30/257 (11%)

Query: 68  EHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASL 127
              +   +   ++         L ++ ++  +    +  +  +    N+  L L G   L
Sbjct: 24  AETIKDNLKKKSVTDA-VTQNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGN-KL 80

Query: 128 IEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGC--SNLKRFLEISCNIE 185
            +I   + +L  L +L L     +K L +  +L  LK L L     S++   L     +E
Sbjct: 81  TDI-KPLANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLE 137

Query: 186 NLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKL 245
           +L L    I ++ + +  L++L  L L +  ++  +   L  L  LQ L+LS        
Sbjct: 138 SLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKNHI---- 190

Query: 246 PEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKI 305
             ++  L  LK           NL  + L        P +     +L   N  +N    +
Sbjct: 191 -SDLRALAGLK-----------NLDVLELFSQECLNKPIN--HQSNLVVPNTVKNTDGSL 236

Query: 306 PSSIKQLSNLLFLTLQN 322
             + + +S+       N
Sbjct: 237 -VTPEIISDDGDYEKPN 252

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 24/189 (12%)

Query: 183 NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKL 242
                +L + ++ +   +   L+ + ++   N   +KSV   +  L ++  LFL+G  KL
Sbjct: 25  ETIKDNLKKKSVTDA-VTQNELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGN-KL 80

Query: 243 EKLPEEIGNLESLKIMLANETAISQ--------NLVDMSLVDCGITELPESLGRSPSLKF 294
             + + + NL++L  +  +E  +           L  +SL   GI+++   L   P L+ 
Sbjct: 81  TDI-KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLES 138

Query: 295 LNLAENDFEKIPSSIKQLSNLLFLTLQNCK--------RLQSLPELPCGSNIFARYCTSL 346
           L L  N    I + + +L+ L  L+L++ +         L  L  L    N  +    +L
Sbjct: 139 LYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-RAL 196

Query: 347 ETLSNLSTL 355
             L NL  L
Sbjct: 197 AGLKNLDVL 205

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 77.3 bits (190), Expect = 4e-15
 Identities = 40/287 (13%), Positives = 88/287 (30%), Gaps = 30/287 (10%)

Query: 88  QNLAALKRLNLSYCKQLSRIPDLSLAL------NLEWLDLVGCASLIEIHSSIQHLNKLV 141
           Q+  +L+ LN     + ++I    L        +L  + +     ++E+    +    L 
Sbjct: 189 QHNTSLEVLNFYMT-EFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLE 246

Query: 142 FLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSN-----LKRFLEISCNIENLDLSETAI- 194
               G       +P    NL   + L   G S      +      +  I  LDL    + 
Sbjct: 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE 306

Query: 195 -EELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNL- 252
            E+  + I     L  L+  N    + +       K L+ L +      + + +E G + 
Sbjct: 307 TEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366

Query: 253 -ESLKIMLANETAISQ-NLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIK 310
              L  +      +    +    + +  +  +   L      + + L   +      +  
Sbjct: 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE----RITDL 422

Query: 311 QLSNLLFLTLQNCKRLQSLPELPCGSNI-------FARYCTSLETLS 350
            L N +   L  CK+L+          +         +Y  ++  + 
Sbjct: 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 71.5 bits (175), Expect = 3e-13
 Identities = 41/269 (15%), Positives = 92/269 (34%), Gaps = 37/269 (13%)

Query: 89  NLAALKRLNLSYCKQLSR--IPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLG 146
             A +++L+L Y    +      +    NLE L+         +    Q+  +L  L + 
Sbjct: 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350

Query: 147 RCISLKSLPTGINL---DSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGN 203
           R    + +     L     L  L   GC  L+  + +  +    D++  ++E + + + N
Sbjct: 351 RGADEQGMEDEEGLVSQRGLIAL-AQGCQELEY-MAVYVS----DITNESLESIGTYLKN 404

Query: 204 LSRLVRLDLTNCSRL------KSVSNSLCNLKSLQYLFLSGCLK------LEKLPEEIGN 251
           L     + L    R+        V + L   K L+               L  + +   N
Sbjct: 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN 464

Query: 252 LESLKIMLANETAIS--------QNLVDMSLVDCGITE--LPESLGRSPSLKFLNL---- 297
           +  + +    E+            NL  + +  C  +E  +  ++ + PSL++L +    
Sbjct: 465 VRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524

Query: 298 AENDFEKIPSSIKQLSNLLFLTLQNCKRL 326
           A    + +    +   N+  +  +    +
Sbjct: 525 ASMTGQDLMQMARPYWNIELIPSRRVPEV 553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 69.6 bits (170), Expect = 1e-12
 Identities = 68/382 (17%), Positives = 120/382 (31%), Gaps = 63/382 (16%)

Query: 27  FPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG 86
           FP +   K++       F      +     P  +  S N+   L S+      +      
Sbjct: 72  FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR-QLKSVHFRRMIVSD--LD 128

Query: 87  VQNLAA-----LKRLNLSYCKQLSRIPDLSLAL---NLEWLDLVGCA----SLIEIHSSI 134
           +  LA      L+ L L  C   +    LS+      ++ L +   +        +H   
Sbjct: 129 LDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188

Query: 135 QHLNKLVFLNLGRC----ISLKSLPT-GINLDSLKVLYLGGCS------------NLKRF 177
           QH   L  LN        IS K L T   N  SL  + +G               NL+ F
Sbjct: 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248

Query: 178 LEISCN-----------------IENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRL-K 219
              S N                 +  L LS     E+P      +++ +LDL       +
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE 308

Query: 220 SVSNSLCNLKSLQYLFLSGCLK---LEKLPEEIGNLESLKIMLANETAISQNLVDMSLVD 276
                +    +L+ L     +    LE L +    L+ L+I             +  +  
Sbjct: 309 DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIER-GADEQGMEDEEGLVSQ 367

Query: 277 CGITELPESLGRSPSLKFLNLAEND-----FEKIPSSIKQLSNLLFLTLQNCKRLQSLPE 331
            G+  L +       L+++ +  +D      E I + +K L +   + L   +R+  LP 
Sbjct: 368 RGLIALAQGC---QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424

Query: 332 LPCGSNIFARYCTSLETLSNLS 353
                ++    C  L   +   
Sbjct: 425 DNGVRSL-LIGCKKLRRFAFYL 445

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 61.5 bits (149), Expect = 4e-10
 Identities = 48/305 (15%), Positives = 86/305 (28%), Gaps = 52/305 (17%)

Query: 69  HLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIPDLSLAL---NLEWLDLVGC 124
           +L        N +        NL   ++L       +       L      +  LDL+  
Sbjct: 244 NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYA 303

Query: 125 ASLIEIH-SSIQHLNKLVFLNLGRCISLKSLPT-GINLDSLKVLYLGGCSNLKRFLEISC 182
               E H + IQ    L  L     I  + L         LK L +   ++ +       
Sbjct: 304 LLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQ-----GM 358

Query: 183 NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSR-----LKSVSNSLCNLKSLQYLFLS 237
             E   +S+  +  L         L  + +   S      L+S+   L NL   + + L 
Sbjct: 359 EDEEGLVSQRGLIALAQ---GCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLD 414

Query: 238 GCLKLEKLPEEIG------NLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRS-P 290
              ++  LP + G        + L+            L D+ L           +G+  P
Sbjct: 415 REERITDLPLDNGVRSLLIGCKKLRRF--AFYLRQGGLTDLGL---------SYIGQYSP 463

Query: 291 SLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSL-----PELPCGSNIFARYCTS 345
           +++++ L           + +         + C  LQ L                    S
Sbjct: 464 NVRWMLLGYVGE--SDEGLMEF-------SRGCPNLQKLEMRGCCFSERAIAAAVTKLPS 514

Query: 346 LETLS 350
           L  L 
Sbjct: 515 LRYLW 519

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 57.6 bits (139), Expect = 6e-09
 Identities = 40/219 (18%), Positives = 71/219 (32%), Gaps = 44/219 (20%)

Query: 65  NIPEHLVSLEMPHSNIEQLW-------NGVQNLAA----LKRLNLSYCKQL-------SR 106
              E   +L     N+E L         G++ LA     LKRL +               
Sbjct: 305 LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGL 364

Query: 107 IPDLSLAL------NLEWLDLVGC----ASLIEIHSSIQHLNKLVFLNLGRCISLKSLPT 156
           +    L         LE++ +        SL  I + +++L     + L R   +  LP 
Sbjct: 365 VSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424

Query: 157 -------GINLDSLKVLYLGGCSN------LKRFLEISCNIENLDLSETAI--EELPSSI 201
                   I    L+               L    + S N+  + L       E L    
Sbjct: 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS 484

Query: 202 GNLSRLVRLDLTNCSRL-KSVSNSLCNLKSLQYLFLSGC 239
                L +L++  C    ++++ ++  L SL+YL++ G 
Sbjct: 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY 523

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 3e-04
 Identities = 40/256 (15%), Positives = 86/256 (33%), Gaps = 49/256 (19%)

Query: 175 KRFLEISCNI-ENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCN------ 227
           +R+ +I     E++ ++                L  L L    R    +    N      
Sbjct: 42  RRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVT 101

Query: 228 ---------LKSLQYLFLSGC----LKLEKLPEEIG-NLESLKIM---------LANETA 264
                    L+ L+ +         L L++L +    +LE+LK+          L +   
Sbjct: 102 PWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVT 161

Query: 265 ISQNLVDMSLVDCGITE-----LPESLGRSPSLKFLNLAENDFEKI-PSSIKQLSNLLFL 318
             + +  + + +   +E     L E    + SL+ LN    +F KI P  ++ ++     
Sbjct: 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA----- 216

Query: 319 TLQNCKRLQSLPELPCGSNI----FARYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKL 374
             +NC+ L S+ ++     +    F +   +LE      +L        +  +     KL
Sbjct: 217 --RNCRSLVSV-KVGDFEILELVGFFKAAANLEEF-CGGSLNEDIGMPEKYMNLVFPRKL 272

Query: 375 NRNEIGEIVDGALKKI 390
            R  +  +    +  +
Sbjct: 273 CRLGLSYMGPNEMPIL 288

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 71.6 bits (176), Expect = 4e-14
 Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 27/198 (13%)

Query: 68  EHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASL 127
            + V   +   ++  L    + L+ ++  N      +  +  +    NL+ L L     +
Sbjct: 19  ANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNS-NIQSLAGMQFFTNLKELHLSHN-QI 75

Query: 128 IEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGC--------SNLKRFLE 179
            ++ S ++ L KL  L++ R   LK+L  GI    L  L+L            +LK    
Sbjct: 76  SDL-SPLKDLTKLEELSVNRN-RLKNLN-GIPSACLSRLFLDNNELRDTDSLIHLK---- 128

Query: 180 ISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGC 239
              N+E L +    ++ +   +G LS+L  LDL     + +    L  LK + ++ L+G 
Sbjct: 129 ---NLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGN-EITNTGG-LTRLKKVNWIDLTGQ 182

Query: 240 LKLEKLPEEIGNLESLKI 257
            K    P +      L I
Sbjct: 183 -KCVNEPVK--YQPELYI 197

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 62.0 bits (151), Expect = 8e-11
 Identities = 35/181 (19%), Positives = 66/181 (36%), Gaps = 31/181 (17%)

Query: 183 NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKL 242
           N    +L + ++ +L  S   LS +   +  N   ++S++  +    +L+ L LS   ++
Sbjct: 20  NAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNS-NIQSLAG-MQFFTNLKELHLSHN-QI 75

Query: 243 EKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDF 302
                 +  L+ L             L ++S+    +  L  +   S  L  L L  N+ 
Sbjct: 76  SD----LSPLKDLT-----------KLEELSVNRNRLKNL--NGIPSACLSRLFLDNNEL 118

Query: 303 EKIPSSIKQLSNLLFLTLQNCK--------RLQSLPELPCGSNIFARYCTSLETLSNLST 354
                S+  L NL  L+++N K         L  L  L    N        L  L  ++ 
Sbjct: 119 RDT-DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNW 176

Query: 355 L 355
           +
Sbjct: 177 I 177

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 69.6 bits (171), Expect = 6e-14
 Identities = 27/179 (15%), Positives = 61/179 (34%), Gaps = 27/179 (15%)

Query: 89  NLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRC 148
            + +L  + L+    ++ +  +  A N++ L +         ++ I  L+ L  L +   
Sbjct: 42  QMNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNI--HATNYNPISGLSNLERLRIMGK 98

Query: 149 -ISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRL 207
            ++   +P    L SL +L +                ++  L         + I  L ++
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDIS-----------HSAHDDSIL---------TKINTLPKV 138

Query: 208 VRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAIS 266
             +DL+    +  +   L  L  L+ L +     +      I +   L  + A    I 
Sbjct: 139 NSIDLSYNGAITDIMP-LKTLPELKSLNIQFD-GVHDY-RGIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.6 bits (158), Expect = 4e-12
 Identities = 37/190 (19%), Positives = 64/190 (33%), Gaps = 21/190 (11%)

Query: 137 LNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGC--SNLKRFLEISCNIENLDLSETAI 194
               +   LG+  S  +  T   ++SL  + L     ++L   +E + NI++L ++    
Sbjct: 22  FKAYLNGLLGQ--SSTANITEAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHA 78

Query: 195 EELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLES 254
               + I  LS L RL +           +L  L SL  L +S     + +  +I  L  
Sbjct: 79  TNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL-- 135

Query: 255 LKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSN 314
                         +  + L   G       L   P LK LN+  +        I+    
Sbjct: 136 ------------PKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFPK 182

Query: 315 LLFLTLQNCK 324
           L  L   +  
Sbjct: 183 LNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 26/147 (17%), Positives = 53/147 (36%), Gaps = 24/147 (16%)

Query: 69  HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCK-QLSRIPDLSLALNLEWLDLVGCASL 127
           ++  L + + +     N +  L+ L+RL +        +IP+LS   +L  LD+   A  
Sbjct: 67  NIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 128 IEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENL 187
             I + I  L K+  ++L    ++  +     L  LK L +               + + 
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQ-----------FDGVHDY 174

Query: 188 DLSETAIEELPSSIGNLSRLVRLDLTN 214
                        I +  +L +L   +
Sbjct: 175 -----------RGIEDFPKLNQLYAFS 190

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 72.5 bits (177), Expect = 1e-13
 Identities = 51/308 (16%), Positives = 97/308 (31%), Gaps = 31/308 (10%)

Query: 18  LRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMP- 76
           L             +     +R    +  +L     +    +              E   
Sbjct: 274 LLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVL 333

Query: 77  -HSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQ 135
                E           L R  LS  K      +L     L+ L+      L+ I   ++
Sbjct: 334 LKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR 393

Query: 136 HLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRF-----LEISCNIENLDLS 190
            L+ L++        L+   T   +D ++  YL    +              ++  L L+
Sbjct: 394 ALDPLLYEKET----LQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA 449

Query: 191 ETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIG 250
              +  L   +  L  +  LDL++  RL+++  +L  L+ L+ L  S    LE +   + 
Sbjct: 450 HKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVDG-VA 505

Query: 251 NLESLKIMLANETAISQNLVDMSLVDCGITELPE--SLGRSPSLKFLNLAENDFEKIPSS 308
           NL                L ++ L +  + +      L   P L  LNL  N   +    
Sbjct: 506 NL--------------PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551

Query: 309 IKQLSNLL 316
            ++L+ +L
Sbjct: 552 QERLAEML 559

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 4e-09
 Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 17/175 (9%)

Query: 183 NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYL--FLSGCL 240
            +   +LS      L S + +   L  L+  N   L ++   +  L  L Y    L    
Sbjct: 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 241 KLEKL-PEEIGNLESLKIMLANETAISQNLVDM----SLVDCGITELPESLGRSPSLKFL 295
            L+ + P     L+ L+     E ++ +          L    +T L   L +   +  L
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CHLEQLLLVTHL 468

Query: 296 NLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLS 350
           +L+ N    +P ++  L  L  L   +   L+++  +             L+ L 
Sbjct: 469 DLSHNRLRALPPALAALRCLEVLQASDN-ALENVDGVAN--------LPRLQELL 514

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 72.1 bits (177), Expect = 1e-13
 Identities = 64/348 (18%), Positives = 119/348 (34%), Gaps = 71/348 (20%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA--L 114
           L  +P   +P H+  +++  ++I +L       L  L+ L +        I + +     
Sbjct: 22  LHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS 79

Query: 115 NLEWLDLVGCASLIEIHSSI-QHLNKLVFLNLGRC-ISLKSLPTGI--NLDSLKVLYLGG 170
           +L  L L      +++ +     L  L  L L +C +    L       L SL++L L  
Sbjct: 80  SLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD 138

Query: 171 CSNLKRFLEISC-----NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSL 225
            +N+K+    S          LDL+   ++ +         L+     + + L+  S +L
Sbjct: 139 -NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-----LLNFQGKHFTLLRLSSITL 192

Query: 226 C----------------NLKSLQYLFLSG----CLKLEKLPEEIGNLESLKIMLANETAI 265
                               S+  L LSG        ++  + I   +   ++L+N   +
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252

Query: 266 SQNLVDMSLVDC---------------------GITELPESL-GRSPSLKFLNLAENDFE 303
             +    +  D                       I  L +S+      L+ L LA+N+  
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN 312

Query: 304 KIPSSI-KQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLS 350
           KI  +    L++LL L L     L S+        +F      LE L 
Sbjct: 313 KIDDNAFWGLTHLLKLNLSQNF-LGSIDS-----RMFEN-LDKLEVLD 353

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 43/243 (17%), Positives = 78/243 (32%), Gaps = 24/243 (9%)

Query: 9   SLDMFRMRRLRFFK-FYNSFPEMNKCKVRHSRCLESFFN--ELRYFQWDGYPLKSLPSKN 65
            L  F+ +     +    +  +MN+  +   +C  + F    +      G   K   +K 
Sbjct: 173 DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC-GNPFKNTSITTLDLSGNGFKESMAKR 231

Query: 66  IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCA 125
             + +   ++    +   +N   +       +               A  ++  DL   +
Sbjct: 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLE-----ASGVKTCDLSK-S 285

Query: 126 SLIEIHSSI-QHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEISC 182
            +  +  S+  H   L  L L +   +  +       L  L  L L    N    ++   
Sbjct: 286 KIFALLKSVFSHFTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKLNLS--QNFLGSIDSRM 342

Query: 183 -----NIENLDLSETAIEELPSSI-GNLSRLVRLDLTNCSRLKSVSNS-LCNLKSLQYLF 235
                 +E LDLS   I  L       L  L  L L    +LKSV +     L SLQ ++
Sbjct: 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIW 401

Query: 236 LSG 238
           L  
Sbjct: 402 LHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 42/213 (19%), Positives = 74/213 (34%), Gaps = 26/213 (12%)

Query: 171 CSN--LKRFLEISCNIENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVSNSLC- 226
           C N  L +  E+  ++  +DLS  +I EL   S   L  L  L +   +    + N+   
Sbjct: 17  CINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR 76

Query: 227 NLKSLQYLFLSGCLKLEKLPEEI-GNLESLKIMLANETAIS------------QNLVDMS 273
            L SL  L L    +  +L       L +L+++   +  +              +L  + 
Sbjct: 77  GLSSLIILKLDYN-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLV 135

Query: 274 LVDCGITEL-PESL-GRSPSLKFLNLAENDFEKIPSSI-KQLSNLLFLTLQNCK-RLQSL 329
           L D  I ++ P S          L+L  N  + I            F  L+     LQ +
Sbjct: 136 LRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM 195

Query: 330 PELPCGSNIFARYCTSLETLSNLSTLFTRSSEL 362
            E   G       C +    ++++TL    +  
Sbjct: 196 NEYWLGWEK----CGNPFKNTSITTLDLSGNGF 224

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 56/274 (20%), Positives = 89/274 (32%), Gaps = 71/274 (25%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA--L 114
           L+++P   IP     + +  + I  +     +    L  L L     L+RI   +     
Sbjct: 23  LQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLA 80

Query: 115 NLEWLDLVGCASLIEIHSSI-QHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGC 171
            LE LDL   A L  +  +    L +L  L+L RC  L+ L  G+   L +L+ LYL   
Sbjct: 81  LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDN 139

Query: 172 SNLKRFLEISCNIENLDLSETAIEELPSSI-GNLSRLVRLDLTNCSRLKSVS-NSLCNLK 229
           +                     ++ LP     +L  L  L L   +R+ SV   +   L 
Sbjct: 140 A---------------------LQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLH 177

Query: 230 SLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRS 289
           SL  L L    ++  +         L                                  
Sbjct: 178 SLDRLLLHQN-RVAHVHP--HAFRDL---------------------------------- 200

Query: 290 PSLKFLNLAENDFEKIPSSI-KQLSNLLFLTLQN 322
             L  L L  N+   +P+     L  L +L L +
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.9 bits (164), Expect = 2e-12
 Identities = 39/195 (20%), Positives = 64/195 (32%), Gaps = 27/195 (13%)

Query: 180 ISCNIENLDLSETAIEELPSSI-GNLSRLVRLDLTNCSRLKSVS-NSLCNLKSLQYLFLS 237
           I    + + L    I  +P++       L  L L +   L  +   +   L  L+ L LS
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLS 88

Query: 238 GCLKLEKLPEEI-GNLESLKIMLANETAIS----------QNLVDMSLVDCGITELPE-S 285
              +L  +       L  L  +  +   +             L  + L D  +  LP+ +
Sbjct: 89  DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148

Query: 286 LGRSPSLKFLNLAENDFEKIPSSI-KQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCT 344
                +L  L L  N    +P    + L +L  L L    R+  +       + F     
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHP-----HAFRD-LG 201

Query: 345 SLETLS----NLSTL 355
            L TL     NLS L
Sbjct: 202 RLMTLYLFANNLSAL 216

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 53/271 (19%), Positives = 100/271 (36%), Gaps = 62/271 (22%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLALNL 116
              +P  N+P    +L++  + +  L +    +   L+ L+LS C ++  I D       
Sbjct: 19  FYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIED------- 69

Query: 117 EWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKR 176
                           + Q L+ L  L L     ++SL  G            G S+L++
Sbjct: 70  ---------------GAYQSLSHLSTLILTG-NPIQSLALGA---------FSGLSSLQK 104

Query: 177 FLEISCNIENLDLSETAIEELPSSI-GNLSRLVRLDLTNCSRLKSV--SNSLCNLKSLQY 233
                     L   ET +  L +   G+L  L  L++ + + ++S        NL +L++
Sbjct: 105 ----------LVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEH 153

Query: 234 LFLSGCLKLEKLPEEI-GNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSL 292
           L LS   K++ +       L  + + L     +S N          +  +     +   L
Sbjct: 154 LDLSSN-KIQSIYCTDLRVLHQMPL-LNLSLDLSLN---------PMNFIQPGAFKEIRL 202

Query: 293 KFLNLAENDFEKIPSSI-KQLSNLLFLTLQN 322
           K L L  N  + +P  I  +L++L  + L  
Sbjct: 203 KELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 48/218 (22%), Positives = 80/218 (36%), Gaps = 48/218 (22%)

Query: 180 ISCNIENLDLSETAIEELPSSI-GNLSRLVRLDLTNCSRLKSV-SNSLCNLKSLQYLFLS 237
           +  + +NLDLS   +  L S    +   L  LDL+ C  ++++   +  +L  L  L L+
Sbjct: 26  LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILT 84

Query: 238 GCLKLEKLPEEI-GNLESLKIMLANETAISQNLVDMSLVDCGITELPESL-GRSPSLKFL 295
           G   ++ L       L SL+ +                V+  +  L     G   +LK L
Sbjct: 85  GN-PIQSLALGAFSGLSSLQKL--------------VAVETNLASLENFPIGHLKTLKEL 129

Query: 296 NLAENDFEKIPSS--IKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLS 353
           N+A N  +          L+NL  L L + K +QS+                   L  L 
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYC---------------TDLRVLH 173

Query: 354 TLFTRSSELWQAFDFCNCFKLNRNEIGEIVDGALKKIQ 391
            +   +  L           L+ N +  I  GA K+I+
Sbjct: 174 QMPLLNLSLD----------LSLNPMNFIQPGAFKEIR 201

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 46/232 (19%), Positives = 86/232 (37%), Gaps = 32/232 (13%)

Query: 60  SLPSKNIPEHLVSLEMPHSNI--EQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLAL--- 114
            L     P  +  +++ +S I    L   +   + L+ L+L       R+ D  +     
Sbjct: 85  PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL----RLSDPIVNTLAK 140

Query: 115 --NLEWLDLVGC-----ASLIEIHSSIQHLNKLVFLNLGRCISLKSLP----TGINLDSL 163
             NL  L+L GC      +L  +   +   ++L  LNL  C                +++
Sbjct: 141 NSNLVRLNLSGCSGFSEFALQTL---LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197

Query: 164 KVLYLGGCSN------LKRFLEISCNIENLDLSETAI--EELPSSIGNLSRLVRLDLTNC 215
             L L G         L   +    N+ +LDLS++ +   +       L+ L  L L+ C
Sbjct: 198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257

Query: 216 SRLKSVS-NSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAIS 266
             +   +   L  + +L+ L + G +    L      L  L+I  ++ T I+
Sbjct: 258 YDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIA 309

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 66.1 bits (161), Expect = 8e-12
 Identities = 46/194 (23%), Positives = 77/194 (39%), Gaps = 26/194 (13%)

Query: 70  LVSLEMPHSNIEQLWNGVQNLAALKRLNLSYC----KQLSRIPDLSLALNLEWLDLVGCA 125
           +++   P S ++Q      +   ++ ++LS        L  I  LS    L+ L L G  
Sbjct: 72  VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI--LSQCSKLQNLSLEGLR 129

Query: 126 SLIEIHSSIQHLNKLVFLNLGRC--ISLKSLPT-GINLDSLKVLYLGGCSN-----LKRF 177
               I +++   + LV LNL  C   S  +L T   +   L  L L  C +     ++  
Sbjct: 130 LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189

Query: 178 LEISC-NIENLDLS-------ETAIEELPSSIGNLSRLVRLDLTNCSRLKSVS-NSLCNL 228
           +      I  L+LS       ++ +  L   +     LV LDL++   LK+        L
Sbjct: 190 VAHVSETITQLNLSGYRKNLQKSDLSTL---VRRCPNLVHLDLSDSVMLKNDCFQEFFQL 246

Query: 229 KSLQYLFLSGCLKL 242
             LQ+L LS C  +
Sbjct: 247 NYLQHLSLSRCYDI 260

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 44/245 (17%), Positives = 80/245 (32%), Gaps = 35/245 (14%)

Query: 146 GRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISC-NIENLDLSETAIEE--LPSSIG 202
           G+ +        ++   +         +       S   ++++DLS + IE   L   + 
Sbjct: 56  GKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS 115

Query: 203 NLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLK-----LEKLPEEIGNLESLKI 257
             S+L  L L        + N+L    +L  L LSGC       L+ L      L+ L +
Sbjct: 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 175

Query: 258 ----------MLANETAISQNLVDMSLVDC-------GITELPESLGRSPSLKFLNLAEN 300
                     +      +S+ +  ++L           ++ L       P+L  L+L+++
Sbjct: 176 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC---PNLVHLDLSDS 232

Query: 301 DF--EKIPSSIKQLSNLLFLTLQNCKR-----LQSLPELPCGSNIFARYCTSLETLSNLS 353
                       QL+ L  L+L  C       L  L E+P    +         TL  L 
Sbjct: 233 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK 292

Query: 354 TLFTR 358
                
Sbjct: 293 EALPH 297

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.8 bits (163), Expect = 4e-12
 Identities = 39/228 (17%), Positives = 77/228 (33%), Gaps = 45/228 (19%)

Query: 180 ISCNIENLDLSETAIEELPSSI-GNLSRLVRLDLTNCSRLKSV-SNSLCNLKSLQYLFLS 237
           +  N   L    T +  +          L +++++    L+ + ++   NL  L  + + 
Sbjct: 28  LPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87

Query: 238 GCLKLEKLPEEI-GNLESLKIMLANETAI----------SQNLVDMSLVD-CGITELPES 285
               L  +  E   NL +L+ +L + T I          S   V + + D   I  +  +
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 286 L--GRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYC 343
              G S     L L +N  ++I +S    + L  L L +   L+ LP      ++F    
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN-----DVFHG-- 200

Query: 344 TSLETLSNLSTLFTRSSELWQAFDFCNCFKLNRNEIGEIVDGALKKIQ 391
                 S    L                  ++R  I  +    L+ ++
Sbjct: 201 -----ASGPVILD-----------------ISRTRIHSLPSYGLENLK 226

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.8 bits (145), Expect = 8e-10
 Identities = 35/196 (17%), Positives = 77/196 (39%), Gaps = 27/196 (13%)

Query: 69  HLVSLEMPHSNI-EQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA--LNLEWLDLVGC 124
            L  +E+  +++ E +   V  NL  L  + +     L  I   +     NL++L +   
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 125 ASLIEIHSSI-QHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCN 183
             +  +      H  + V L++   I++ ++                      F+ +S  
Sbjct: 115 G-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS------------------FVGLSFE 155

Query: 184 IENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVS-NSLCNLKSLQYLFLSGCLKL 242
              L L++  I+E+ +S  N ++L  L+L++ + L+ +  +          L +S   ++
Sbjct: 156 SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RI 214

Query: 243 EKLPEEI-GNLESLKI 257
             LP     NL+ L+ 
Sbjct: 215 HSLPSYGLENLKKLRA 230

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 30/218 (13%), Positives = 72/218 (33%), Gaps = 36/218 (16%)

Query: 181 SCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSV-SNSLCNLKSLQYLFLSGC 239
            C+       E+ + E+PS +      + L     ++L+ +   +      L+ + +S  
Sbjct: 8   HCSNRVFLCQESKVTEIPSDL--PRNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQN 64

Query: 240 LKLEKLPEEI----GNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRS-PSLKF 294
             LE +  ++      L  ++I  AN                 +  +     ++ P+L++
Sbjct: 65  DVLEVIEADVFSNLPKLHEIRIEKANN----------------LLYINPEAFQNLPNLQY 108

Query: 295 LNLAENDFEKIPSSIKQ-LSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLS 353
           L ++    + +P   K      + L +Q+   + ++       N F         L    
Sbjct: 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER-----NSFVGLSFESVILWLNK 163

Query: 354 TLFTRSSELWQAFDFCNCFKL---NRNEIGEIVDGALK 388
                      AF+     +L   + N + E+ +    
Sbjct: 164 NGIQEIHN--SAFNGTQLDELNLSDNNNLEELPNDVFH 199

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 34/175 (19%), Positives = 64/175 (36%), Gaps = 24/175 (13%)

Query: 5   IEGISLDMFR-MRRLRFFKFYN----SFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLK 59
           +  I+ + F+ +  L++    N      P+++K        L+   N           + 
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI---------NIH 142

Query: 60  SLPSK---NIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLA--L 114
           ++       +    V L +  + I+++ N   N   L  LNLS    L  +P+       
Sbjct: 143 TIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202

Query: 115 NLEWLDLVGCASLIEIHSSI-QHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYL 168
               LD+     +  + S   ++L KL   +     +LK LPT   L +L    L
Sbjct: 203 GPVILDISRT-RIHSLPSYGLENLKKLRARSTY---NLKKLPTLEKLVALMEASL 253

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 52/316 (16%), Positives = 96/316 (30%), Gaps = 49/316 (15%)

Query: 69  HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLI 128
               + + +         ++    ++ + L          D +L       D  G     
Sbjct: 44  CRRKVFIGNCYAVSPATVIRRFPKVRSVELKGK---PHFADFNL-----VPDGWGGYVYP 95

Query: 129 EIHSSIQHLNKLVFLNLGRC-ISLKSLPT-GINLDSLKVLYLGGCSN-----LKRFLEIS 181
            I +       L  + L R  ++   L     +  + KVL L  C       L       
Sbjct: 96  WIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC 155

Query: 182 CNIENLDLSETAIEE-----LPSSIGNLSRLVRLDLTNCSRL---KSVSNSLCNLKSLQY 233
            N++ LDL E+ +++     L       + LV L+++  +      ++   +    +L+ 
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215

Query: 234 LFLSGCLKLEKLPEEIGNLESLK----------------IMLANETAISQNLVDMS-LVD 276
           L L+  + LEKL   +     L+                  L+   +  + L  +S   D
Sbjct: 216 LKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275

Query: 277 CGITELPESLGRSPSLKFLNLAENDF--EKIPSSIKQLSNLLFLTLQNCKRLQSLPELPC 334
                LP        L  LNL+        +   + Q   L  L + +      L  L  
Sbjct: 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL-- 333

Query: 335 GSNIFARYCTSLETLS 350
                A  C  L  L 
Sbjct: 334 -----ASTCKDLRELR 344

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 35/242 (14%), Positives = 67/242 (27%), Gaps = 46/242 (19%)

Query: 88  QNLAALKRLNLSYCKQLSR--IPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNL 145
              + L  LNLSY    S   +  L     L+ L ++       +         L  L +
Sbjct: 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRV 345

Query: 146 GRCISLKSLP-TGINLDSLKVLYLGGCSNLKRFLEISCNI---------------ENLDL 189
                    P   +    L  +   GC  L+  L     +                   L
Sbjct: 346 FPSEPFVMEPNVALTEQGLVSV-SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL 404

Query: 190 S------ETAIEELPSSIG------NLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLS 237
                     +   P  IG      +   L RL L+     K         K ++ L ++
Sbjct: 405 CIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVA 464

Query: 238 GCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITE--LPESLGRSPSLKFL 295
                        +   +  +L+       +L  + + DC   +  L  +  +  +++ L
Sbjct: 465 FA--------GDSD-LGMHHVLSG----CDSLRKLEIRDCPFGDKALLANASKLETMRSL 511

Query: 296 NL 297
            +
Sbjct: 512 WM 513

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 23/172 (13%), Positives = 61/172 (35%), Gaps = 42/172 (24%)

Query: 87  VQNLAALKRLNLSYCKQLSRIPDLSLAL------NLEWLDLVGCASLIEIHSSIQHLN-- 138
                 L+ + L +C+Q++   + +L        N+    L         + +++ L+  
Sbjct: 368 SMGCPKLESV-LYFCRQMT---NAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG 423

Query: 139 ---------KLVFLNLGRCISLKSLPT-GINLDSLKVLYLGGCSNLKRFLEISCNIENLD 188
                     L  L+L   ++ K     G     +++L +                    
Sbjct: 424 FGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFA----------------G 467

Query: 189 LSETAIEELPSSIGNLSRLVRLDLTNCSRL-KSVSNSLCNLKSLQYLFLSGC 239
            S+  +  +   +     L +L++ +C    K++  +   L++++ L++S C
Sbjct: 468 DSDLGMHHV---LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 41/291 (14%), Positives = 84/291 (28%), Gaps = 49/291 (16%)

Query: 69  HLVSLEMPHS-NIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASL 127
           +L SL++  +  +E+L   +Q    L+ L         R    S                
Sbjct: 212 NLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG--------------- 256

Query: 128 IEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENL 187
             +  ++    +L  L+         LP               CS L            L
Sbjct: 257 --LSVALSGCKELRCLSGFWDAVPAYLPA----------VYSVCSRLTT----------L 294

Query: 188 DLSETAI--EELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKL 245
           +LS   +   +L   +    +L RL + +      +       K L+ L +         
Sbjct: 295 NLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVME 354

Query: 246 PEEIGNLESLKIMLANETAISQNLVDMSLV-DCGITELPESLGRSPSLKFLNLAENDFEK 304
           P      + L  +      +   L     + +  +  +  +    P++    L   + + 
Sbjct: 355 PNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR---PNMTRFRLCIIEPKA 411

Query: 305 IPSSIKQLSNLLFLTL-QNCKRLQSLPELPC----GSNIFARYCTSLETLS 350
                 +  ++ F  + ++CK L+ L                Y   +E LS
Sbjct: 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLS 462

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 40/243 (16%), Positives = 78/243 (32%), Gaps = 38/243 (15%)

Query: 175 KRFLEISCNIE-NLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQY 233
           K + EI       + +         + I    ++  ++L         +          Y
Sbjct: 35  KSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVY 94

Query: 234 LFL----SGCLKLEKLPEEIGNLESLKIMLANETAISQ---NLVDMSLVDC-GITE--LP 283
            ++    S    LE++      L+ + +       I++   N   + L  C G +   L 
Sbjct: 95  PWIEAMSSSYTWLEEI-----RLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA 149

Query: 284 ESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNI----- 338
                  +LK L+L E+D + +  S   LS+           L SL      S +     
Sbjct: 150 AIAATCRNLKELDLRESDVDDV--SGHWLSHF----PDTYTSLVSLNISCLASEVSFSAL 203

Query: 339 --FARYCTSLETLS--------NLSTLFTRSSELWQAFDFCNCFKLNRNEIGEIVDGALK 388
                 C +L++L          L+TL  R+ +L +           R ++   +  AL 
Sbjct: 204 ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQL-EELGTGGYTAEVRPDVYSGLSVALS 262

Query: 389 KIQ 391
             +
Sbjct: 263 GCK 265

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 39/279 (13%), Positives = 83/279 (29%), Gaps = 42/279 (15%)

Query: 101 CKQLSRIPDLS-LALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGIN 159
           CK    I       + +     V  A++I     ++ +      +      +     G  
Sbjct: 34  CKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYV 93

Query: 160 LDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRL- 218
              ++ +     + L+        ++ + +++  +E +     +      L L++C    
Sbjct: 94  YPWIEAM-SSSYTWLE-----EIRLKRMVVTDDCLELIAK---SFKNFKVLVLSSCEGFS 144

Query: 219 -KSVSNSLCNLKSLQYLFLSGCLK-------LEKLPEEIGNLESLKIMLANETAISQNLV 270
              ++      ++L+ L L            L   P+   +L SL I          + +
Sbjct: 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNI----------SCL 194

Query: 271 DMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLP 330
              +    +  L     R P+LK L L         +    L  L  L LQ   +L+ L 
Sbjct: 195 ASEVSFSALERLVT---RCPNLKSLKL---------NRAVPLEKLATL-LQRAPQLEELG 241

Query: 331 ELPCGSNIFARYCTSLETLSNLSTLFTRSSELWQAFDFC 369
                + +     + L    +        S  W A    
Sbjct: 242 TGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAY 280

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.1 bits (156), Expect = 5e-11
 Identities = 53/301 (17%), Positives = 104/301 (34%), Gaps = 33/301 (10%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLE 117
           +K +   N   + +S+        +L N   N       +     QL     +    ++ 
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV-WYFSIS 255

Query: 118 WLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLK 175
            + L G     +   S   L  L    +   +      + I     ++ +      S  +
Sbjct: 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV-FGFPQSYIYEIFSNMNIKNFT-VSGTR 313

Query: 176 RFLEISC----NIENLDLSETAIEELPSSI-GNLSRLVRLDLTNC--SRLKSVSNSLCNL 228
               +         +LD S   + +      G+L+ L  L L       L  ++     +
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373

Query: 229 KSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGR 288
           KSLQ L +S         +  G+    K           +L+ +++    +T+       
Sbjct: 374 KSLQQLDISQNSVSYDEKK--GDCSWTK-----------SLLSLNMSSNILTDTIFRCL- 419

Query: 289 SPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLET 348
            P +K L+L  N  + IP  + +L  L  L + + + L+S+P+      IF R  TSL+ 
Sbjct: 420 PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPD-----GIFDR-LTSLQK 472

Query: 349 L 349
           +
Sbjct: 473 I 473

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 50/307 (16%), Positives = 94/307 (30%), Gaps = 21/307 (6%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNG--VQNLAALKRLNLSYCKQLSRIPDLSLALN 115
           L  +       +L  L++  +  + L       N++ LK L LS    L +   L +A  
Sbjct: 81  LVKISCHPTV-NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKSSVLPIAHL 138

Query: 116 LEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLK 175
                L+            + L      +L            I   S+K +     SN+K
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198

Query: 176 RFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLF 235
             LE +     L +          S   L+ +     +    L+ V ++     S+  + 
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258

Query: 236 LSGCLKLEKLPEEIGNLESLKIMLANETAIS----------QNLVDMSLVDCGITELPE- 284
           L G L          +L++L I                    N+   +    G   +   
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318

Query: 285 SLGRSPSLKFLNLAENDFEKIPSSI-KQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYC 343
              +      L+ + N            L+ L  L LQ  + L+ L ++   + +  +  
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKI---AEMTTQM- 373

Query: 344 TSLETLS 350
            SL+ L 
Sbjct: 374 KSLQQLD 380

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 37/241 (15%), Positives = 87/241 (36%), Gaps = 33/241 (13%)

Query: 89  NLAALKRLNLSYCKQLSRIPDLSLAL-NLEWLDLVGCASLIEIHS-SIQHLNKLVFLNLG 146
           +L AL    +           +     N+   +    +    +H      ++  + L+  
Sbjct: 274 SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF-TVSGTRMVHMLCPSKISPFLHLDFS 332

Query: 147 RCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEISC------NIENLDLSETAIEELP 198
               L         +L  L+ L L   + LK   +I+       +++ LD+S+ ++    
Sbjct: 333 NN-LLTDTVFENCGHLTELETLILQM-NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390

Query: 199 SSIG--NLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLK 256
                     L+ L++++     ++   L     ++ L L    K++ +P+++  LE+L+
Sbjct: 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSN-KIKSIPKQVVKLEALQ 447

Query: 257 IMLANETAISQNLVDMSLVDCGITELPE-SLGRSPSLKFLNLAENDFEKIPSSIKQLSNL 315
            +              ++    +  +P+    R  SL+ + L  N ++     I  LS  
Sbjct: 448 EL--------------NVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 493

Query: 316 L 316
           L
Sbjct: 494 L 494

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 38/188 (20%), Positives = 65/188 (34%), Gaps = 22/188 (11%)

Query: 180 ISCNIENLDLSETAIEELPSS-IGNLSRLVRLDLTNCSRLKSVSNSLC-NLKSLQYLFLS 237
           +S     L++S+  I EL +S I +LS+L  L +++  R++ +  S+    + L+YL LS
Sbjct: 19  LSQKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLS 77

Query: 238 GCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPES--LGRSPSLKFL 295
              KL K+        +LK +               L       LP     G    LKFL
Sbjct: 78  HN-KLVKIS--CHPTVNLKHL--------------DLSFNAFDALPICKEFGNMSQLKFL 120

Query: 296 NLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTL 355
            L+    EK         N+  + L   +      +     +        +   +     
Sbjct: 121 GLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF 180

Query: 356 FTRSSELW 363
               S   
Sbjct: 181 ILDVSVKT 188

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.6 bits (145), Expect = 5e-10
 Identities = 52/205 (25%), Positives = 81/205 (39%), Gaps = 42/205 (20%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIP-----DLS 111
           L ++PS NIP     L++  + +  L +     L  L+ L L+   +L  +P     +L 
Sbjct: 28  LTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELK 85

Query: 112 LALNLEWLDLVGCASLIEIHSSI-QHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYL 168
              NLE L +     L  +   +   L  L  L L R   LKSLP  +  +L  L  L L
Sbjct: 86  ---NLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSL 140

Query: 169 GGC-------------SNLKRFLEISCNIENLDLSETAIEELPSSI-GNLSRLVRLDLTN 214
           G               ++LK           L L    ++ +P      L+ L  L L N
Sbjct: 141 GYNELQSLPKGVFDKLTSLKE----------LRLYNNQLKRVPEGAFDKLTELKTLKLDN 190

Query: 215 CSRLKSVS-NSLCNLKSLQYLFLSG 238
            ++LK V   +  +L+ L+ L L  
Sbjct: 191 -NQLKRVPEGAFDSLEKLKMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 46/187 (24%), Positives = 87/187 (46%), Gaps = 32/187 (17%)

Query: 180 ISCNIENLDLSETAIEELPSSI-GNLSRLVRLDLTNCSRLKSVSNSLCN-LKSLQYLFLS 237
           I  + + LDL    +  LPS     L++L  L L + ++L+++   +   LK+L+ L+++
Sbjct: 35  IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVT 93

Query: 238 GCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRS-PSLKFLN 296
              KL+ LP  +   + L            NL ++ L    +  LP  +  S   L +L+
Sbjct: 94  DN-KLQALPIGV--FDQLV-----------NLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139

Query: 297 LAENDFEKIPSSI-KQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTL 355
           L  N+ + +P  +  +L++L  L L N + L+ +PE       F +       L+ L TL
Sbjct: 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPE-----GAFDK-------LTELKTL 186

Query: 356 FTRSSEL 362
              +++L
Sbjct: 187 KLDNNQL 193

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.0 bits (148), Expect = 6e-10
 Identities = 51/315 (16%), Positives = 99/315 (31%), Gaps = 48/315 (15%)

Query: 47  ELRYFQWDGYPLKSLPSKNIP--EHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQ 103
           +L   + +    + L +           L +   +IE  W   V+         + Y   
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY--- 280

Query: 104 LSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLD 161
                     LN+  L +       E   S   L  L+  ++            +     
Sbjct: 281 ----------LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ-VFLFSKEALYSVFA 329

Query: 162 SLKVLYLGGCSNLKRFLE----ISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSR 217
            + +  L   S+             +   L+ ++    +        S L RL      R
Sbjct: 330 EMNIKMLSI-SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF--QGCSTLKRLQTLILQR 386

Query: 218 --LKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLV 275
             LK+        K++  L     + L  L     +            A +++++ ++L 
Sbjct: 387 NGLKNFFKVALMTKNMSSLETLD-VSLNSLNSHAYD---------RTCAWAESILVLNLS 436

Query: 276 DCGITELP-ESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPC 334
              +T      L   P +K L+L  N    IP  +  L  L  L + +  +L+S+P+   
Sbjct: 437 SNMLTGSVFRCL--PPKVKVLDLHNNRIMSIPKDVTHLQALQELNVAS-NQLKSVPD--- 490

Query: 335 GSNIFARYCTSLETL 349
              +F R  TSL+ +
Sbjct: 491 --GVFDR-LTSLQYI 502

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 34/220 (15%)

Query: 47  ELRYFQWDGYPLKSLPSKNI-------PEHLVSLEMPHSNIEQLW-NGVQNLAA------ 92
           +   F +    LKSL  +++        +  +       NI+ L  +    +        
Sbjct: 293 DREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSP 352

Query: 93  --LKRLNLSYCKQLSRIPDLSLAL-NLEWLDL--VGCASLIEIHSSIQHLNKLVFLNLGR 147
                LN +       +      L  L+ L L   G  +  ++    ++++ L  L++  
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV-- 410

Query: 148 CISLKSLPTGIN------LDSLKVLYLGGCSNLKR--FLEISCNIENLDLSETAIEELPS 199
             SL SL +          +S+ VL L     L    F  +   ++ LDL    I  +P 
Sbjct: 411 --SLNSLNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLPPKVKVLDLHNNRIMSIPK 467

Query: 200 SIGNLSRLVRLDLTNCSRLKSVSN-SLCNLKSLQYLFLSG 238
            + +L  L  L++ + ++LKSV +     L SLQY++L  
Sbjct: 468 DVTHLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 50/330 (15%), Positives = 101/330 (30%), Gaps = 52/330 (15%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLA--L 114
           L  +P  ++P    +L +  ++I +L       L+ L+ L LS+  ++  +         
Sbjct: 43  LTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQ 100

Query: 115 NLEWLDLVGCASLIEIHS-SIQHLNKLVFLNLGRCISLKSLPTGI---NLDSLKVLYLGG 170
           +LE+LD+    S   + + S   +  L  L+L        LP      NL  L  L L  
Sbjct: 101 DLEYLDV----SHNRLQNISCCPMASLRHLDLS-FNDFDVLPVCKEFGNLTKLTFLGLSA 155

Query: 171 ----CSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLC 226
                 +L     +  +   LDL    I+   +    +     L L              
Sbjct: 156 AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215

Query: 227 NLKSLQYLFLSG--------------------CLKLEKLPEEIGNLESLKIMLANETAIS 266
           ++ +L +L LS                        L  +  +         +   +    
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275

Query: 267 QNLVDMSLVDCGITELPE------SLGRSPSLKFLNLAENDFEKIPSSI-KQLSNLLFLT 319
           + +  +++ +  ITE  +      S     SL   ++    F     ++    + +    
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335

Query: 320 LQNCKRLQSLPELPCGSNIFARYCTSLETL 349
           L        +  +   S       +S   L
Sbjct: 336 LSI-SDTPFIHMVCPPS------PSSFTFL 358

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 58/237 (24%), Positives = 81/237 (34%), Gaps = 41/237 (17%)

Query: 88  QNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGR 147
             +A+   +N    + L+ +P   L  +   L L          +++    +L  LNL R
Sbjct: 7   SKVASHLEVNCDK-RNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 148 CISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRL 207
              L  L     L  L                       LDLS   ++ LP     L  L
Sbjct: 65  A-ELTKLQVDGTLPVLG---------------------TLDLSHNQLQSLPLLGQTLPAL 102

Query: 208 VRLDLTNCSRLKSVSNSL-CNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAIS 266
             LD++   RL S+       L  LQ L+L G  +L+ LP   G L              
Sbjct: 103 TVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPP--GLLTPT----------- 147

Query: 267 QNLVDMSLVDCGITELPESLGRS-PSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQN 322
             L  +SL +  +TELP  L     +L  L L EN    IP        L F  L  
Sbjct: 148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 41/193 (21%), Positives = 69/193 (35%), Gaps = 45/193 (23%)

Query: 47  ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSR 106
            L     D   L  L        L +L++ H+ ++ L    Q L AL  L++S+  +L+ 
Sbjct: 56  RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTS 114

Query: 107 IPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVL 166
           +P                        +++ L +L  L L     LK+LP G+ L      
Sbjct: 115 LP----------------------LGALRGLGELQELYLKGN-ELKTLPPGL-LTPT--- 147

Query: 167 YLGGCSNLKRFLEISCNIENLDLSETAIEELPSSI-GNLSRLVRLDLTNCSRLKSVSNSL 225
                  L++          L L+   + ELP+ +   L  L  L L   + L ++    
Sbjct: 148 -----PKLEK----------LSLANNNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGF 191

Query: 226 CNLKSLQYLFLSG 238
                L + FL G
Sbjct: 192 FGSHLLPFAFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 30/139 (21%), Positives = 44/139 (31%), Gaps = 26/139 (18%)

Query: 214 NCS--RLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVD 271
           NC    L ++   L   K    L LS    L         L                L  
Sbjct: 16  NCDKRNLTALPPDL--PKDTTILHLSEN-LLYTFSL--ATLMPYT-----------RLTQ 59

Query: 272 MSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPE 331
           ++L    +T+L    G  P L  L+L+ N  + +P   + L  L  L +   + L SLP 
Sbjct: 60  LNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPL 117

Query: 332 LPCGSNIFARYCTSLETLS 350
                         L+ L 
Sbjct: 118 -----GALRG-LGELQELY 130

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.8 bits (142), Expect = 1e-09
 Identities = 51/281 (18%), Positives = 99/281 (35%), Gaps = 39/281 (13%)

Query: 75  MPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHS-- 132
           +  +++E    G      LKR++      L +  D+  +L+L+ L +        I    
Sbjct: 31  LGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88

Query: 133 ----SIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEIS------- 181
                I  L +L   NL    +            L +L L   S   R   ++       
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 182 CNIENLDLSETAIEELP-SSIGNLSRLVRLDLTNCSRL--KSVSNSLC--NLKSLQYLFL 236
             ++ L +++          +     L  LDL++   L  + + ++LC     +LQ L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 237 SGCLKLEKLPEEIGNLESLKIML---------------ANETAISQNLVDMSLVDCGITE 281
                +E        L + ++ L               A        L  ++L   G+ +
Sbjct: 209 RN-AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267

Query: 282 LPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQN 322
           +P+ L     L  L+L+ N  ++ PS   +L  +  L+L+ 
Sbjct: 268 VPKGL--PAKLSVLDLSYNRLDRNPSPD-ELPQVGNLSLKG 305

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 30/161 (18%), Positives = 52/161 (32%), Gaps = 14/161 (8%)

Query: 66  IPEHLVSLEMPHSNIEQL-WNGVQNLAALKRLNLSYCKQLSRIPDLSLAL-----NLEWL 119
           +   L  L +  ++        V+   AL  L+LS   +L     +S         L+ L
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 120 DLVGC--ASL-IEIHSSIQHLNKLVFLNLGRCISLKSLPTGIN---LDSLKVLYLGGCSN 173
            L      +      +      +L  L+L    SL+      +      L  L L     
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTGL 265

Query: 174 LKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTN 214
            +    +   +  LDLS   ++  P S   L ++  L L  
Sbjct: 266 KQVPKGLPAKLSVLDLSYNRLDRNP-SPDELPQVGNLSLKG 305

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 41/281 (14%), Positives = 78/281 (27%), Gaps = 70/281 (24%)

Query: 93  LKRLNLSYCKQLSRIPD--------LSLAL----NLEWLDLVGC----------ASLIEI 130
           L+    S      R+ D        L  AL     L  + L                +  
Sbjct: 62  LEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSK 120

Query: 131 HSSIQHLN-----------KLVFLNLGRCISLKSLPTGINLDSLKVLYLG-------GCS 172
           H+ ++HL              +   L      K      N   L+ +  G          
Sbjct: 121 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA---KNAPPLRSIICGRNRLENGSMK 177

Query: 173 NLKRFLEISCNIENLDLS------ETAIEELPSSIGNLSRLVRLDLTNCSRL-----KSV 221
              +  +    +  + +       E     L   +     L  LDL +          ++
Sbjct: 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSAL 236

Query: 222 SNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITE 281
           + +L +  +L+ L L+ CL        +    +  ++ A     +  L  + L    I  
Sbjct: 237 AIALKSWPNLRELGLNDCL--------LSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288

Query: 282 -----LPESLGRS-PSLKFLNLAENDFEKIPSSIKQLSNLL 316
                L   +    P L FL L  N F +    + ++  + 
Sbjct: 289 DAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVF 329

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 44/292 (15%), Positives = 84/292 (28%), Gaps = 72/292 (24%)

Query: 93  LKRLNLSYCKQLSR--IPDLSLAL----NLEWLDLVGC----------ASLIEIHSSIQH 136
           ++  +L     ++      +   L    +++ + L G           +  I     ++ 
Sbjct: 6   IEGKSLKLD-AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 137 LNKLVFLNLGRCIS-----LKSLPTGI-NLDSLKVLYLG-------GCSNLKRFLEISCN 183
                 +  GR        L+ L   +     L  + L            L  FL     
Sbjct: 65  AE-FSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 123

Query: 184 IENLDLSETAIEE--------------LPSSIGNLSRLVRLDLTNCSRL-----KSVSNS 224
           +E+L L    +                +     N   L  +      RL     K  + +
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKT 182

Query: 225 LCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITE--- 281
             + + L  + +            I   E ++ +L    A  Q L  + L D   T    
Sbjct: 183 FQSHRLLHTVKMVQN--------GIRP-EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 233

Query: 282 --LPESLGRSPSLKFLNLAENDF-----EKIPSSIKQLSN--LLFLTLQNCK 324
             L  +L   P+L+ L L +          +  +  +L N  L  L LQ  +
Sbjct: 234 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 59/296 (19%), Positives = 105/296 (35%), Gaps = 67/296 (22%)

Query: 68  EHLVSLEMPHSNIEQLWNGVQNLAA--------LKRLNLSYCKQLSRIPD-----LSLAL 114
             L  L +  + +     GV  +          +++L+L  C     +       LS  L
Sbjct: 56  PALAELNLRSNELGD--VGVHCVLQGLQTPSCKIQKLSLQNC----CLTGAGCGVLSSTL 109

Query: 115 ----NLEWLDL----VGCASLIEIHSSIQHLN-KLVFLNLGRCISLKSLPTGINLDSLKV 165
                L+ L L    +G A L  +   +     +L  L L  C         ++  S + 
Sbjct: 110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC--------SLSAASCEP 161

Query: 166 L--YLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIG-NLSRLVRLDLTNCS----RL 218
           L   L    +  + L +S N    D++E  +  L   +  +  +L  L L +C       
Sbjct: 162 LASVLRAKPDF-KELTVSNN----DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216

Query: 219 KSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCG 278
           + +   + +  SL+ L L           ++G+   +  +       S  L  + + +CG
Sbjct: 217 RDLCGIVASKASLRELALGSN--------KLGD-VGMAELCPGLLHPSSRLRTLWIWECG 267

Query: 279 ITE-----LPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSL 329
           IT      L   L    SLK L+LA N+        + L   L   L+   +L+SL
Sbjct: 268 ITAKGCGDLCRVLRAKESLKELSLAGNELG--DEGARLLCETL---LEPGCQLESL 318

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 54.2 bits (131), Expect = 6e-08
 Identities = 59/313 (18%), Positives = 106/313 (33%), Gaps = 71/313 (22%)

Query: 72  SLEMPHSNIEQLW--------NGVQNLAA-------LKRLNLSYCK-QLSRIPDLSLAL- 114
            L  P   +E+L            + LA+        K L +S      + +  L   L 
Sbjct: 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK 195

Query: 115 ----NLEWLDLVGC----ASLIEIHSSIQHLNKLVFLNLGRC----ISLKSLPTGI--NL 160
                LE L L  C     +  ++   +     L  L LG      + +  L  G+    
Sbjct: 196 DSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS 255

Query: 161 DSLKVLYLG-------GCSNLKRFLEISCNIENLDLSETAIEE------LPSSIGNLSRL 207
             L+ L++        GC +L R L    +++ L L+   + +        + +    +L
Sbjct: 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQL 315

Query: 208 VRLDLTNCS----RLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGN--LESLKIMLAN 261
             L + +CS         S+ L   + L  L +S           + +  +  L   L  
Sbjct: 316 ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN--------RLEDAGVRELCQGLGQ 367

Query: 262 ETAISQNLVDMSLVDCGITE-----LPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLL 316
                  L  + L DC +++     L  +L  + SL+ L+L+ N      + I QL   +
Sbjct: 368 ---PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG--DAGILQLVESV 422

Query: 317 FLTLQNCKRLQSL 329
               Q    L+ L
Sbjct: 423 ---RQPGCLLEQL 432

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 42/235 (17%), Positives = 82/235 (34%), Gaps = 52/235 (22%)

Query: 114 LNLEWLDLVGC----ASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLG 169
           L+++ LD+       A   E+   +Q    +    L  C           L         
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVV---RLDDC----------GLTE------A 43

Query: 170 GCSNLKRFLEISCNIENLDLSETAI-----EELPSSIGNLS-RLVRLDLTNCS----RLK 219
            C ++   L ++  +  L+L    +       +   +   S ++ +L L NC        
Sbjct: 44  RCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103

Query: 220 SVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGI 279
            +S++L  L +LQ L LS           +G+   L+++          L  + L  C +
Sbjct: 104 VLSSTLRTLPTLQELHLSDN--------LLGD-AGLQLLCEGLLDPQCRLEKLQLEYCSL 154

Query: 280 TE-----LPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSL 329
           +      L   L   P  K L ++ ND     + ++ L   L     +  +L++L
Sbjct: 155 SAASCEPLASVLRAKPDFKELTVSNNDIN--EAGVRVLCQGL---KDSPCQLEAL 204

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 48.0 bits (115), Expect = 6e-06
 Identities = 46/282 (16%), Positives = 87/282 (30%), Gaps = 70/282 (24%)

Query: 72  SLEMPHSNIEQLW--------NGVQNLAA-------LKRLNLSYCKQLSR-IPDLSLAL- 114
            L+     +E L         +  ++L         L+ L L   K     + +L   L 
Sbjct: 193 GLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL 252

Query: 115 ----NLEWLDLVGC----ASLIEIHSSIQHLNKLVFLNLGRC----ISLKSLPTGI--NL 160
                L  L +  C        ++   ++    L  L+L          + L   +    
Sbjct: 253 HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPG 312

Query: 161 DSLKVLYLG-------GCSNLKRFLEISCNIENLDLSETAI---------EELPSSIGNL 204
             L+ L++         CS+    L  +  +  L +S   +         + L       
Sbjct: 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ---PG 369

Query: 205 SRLVRLDLTNCS----RLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGN------LES 254
           S L  L L +C        S++ +L    SL+ L LS           +G+      +ES
Sbjct: 370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN--------CLGDAGILQLVES 421

Query: 255 LKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLN 296
           ++        +   L D+   +     L       PSL+ ++
Sbjct: 422 VRQPGCLLEQL--VLYDIYWSEEMEDRLQALEKDKPSLRVIS 461

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.2 bits (137), Expect = 1e-08
 Identities = 50/292 (17%), Positives = 100/292 (34%), Gaps = 68/292 (23%)

Query: 2   SEAIEG--ISLDMF--RMR----RLRFFKFYNSFPEMNKCKVRHSRCLESFFNEL----- 48
            E +      L +    +R        +K  N       C  + +  +ES  N L     
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVN-------CD-KLTTIIESSLNVLEPAEY 371

Query: 49  -RYFQWDGYPLKSLP-SKNIPEHLVSL---EMPHSNIEQLWNGVQNLAALKRLNLSYCKQ 103
            + F      L   P S +IP  L+SL   ++  S++  + N +   + +++      + 
Sbjct: 372 RKMFD----RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK---QPKES 424

Query: 104 LSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSL 163
              IP + L L ++        +   +H SI  ++     N+ +      L     LD  
Sbjct: 425 TISIPSIYLELKVK------LENEYALHRSI--VDHY---NIPKTFDSDDLIP-PYLDQY 472

Query: 164 KVLYLG----GCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLK 219
              ++G       + +R         +                 L + +R D T  +   
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRF--------------LEQKIRHDSTAWNASG 518

Query: 220 SVSNSLCNLKS-LQYLFLSGCLKLEKLPEEIGN-LESL--KIMLANETAISQ 267
           S+ N+L  LK    Y+  +   K E+L   I + L  +   ++ +  T + +
Sbjct: 519 SILNTLQQLKFYKPYICDN-DPKYERLVNAILDFLPKIEENLICSKYTDLLR 569

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 2e-08
 Identities = 44/299 (14%), Positives = 84/299 (28%), Gaps = 94/299 (31%)

Query: 214 NCSRLKSVS---NSLCNLKSLQYLFL---SGCLKLEKLPEEIGNLESLKIMLANETAISQ 267
           N SRL+       +L  L+  + + +    G           G     K  +A +  +S 
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGS----------G-----KTWVALDVCLSY 174

Query: 268 NLVDMSLVDCGITELPESLGRSPSLKF-LNLAENDFEKIPSSIKQLSNLLFLTLQN-CKR 325
            +      D  I              F LNL   +     + ++ L  LL+    N   R
Sbjct: 175 KVQCKM--DFKI--------------FWLNLKNCN--SPETVLEMLQKLLYQIDPNWTSR 216

Query: 326 LQSLPELPCGSN--------IFA--RYCTSLETLSNLSTLFTRSSELWQAFDF-CNCFKL 374
                 +    +        +     Y   L  L N+     ++++ W AF+  C     
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-----QNAKAWNAFNLSCKILLT 271

Query: 375 NRN-EIGEIVDGALKKIQVMATWWKQQDPVT------LYEDYHN------PPRGCVSYP- 420
            R  ++ + +  A      +         +T      L   Y +      P     + P 
Sbjct: 272 TRFKQVTDFLSAATTTHISLD---HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 421 -----GSEIPE----WFSYQSMGS-------SVTLE-LPPGWVNNNFVGFALCAIVPDH 462
                   I +    W +++ +           +L  L P      F      ++ P  
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL---SVFPPS 384

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 56/323 (17%), Positives = 103/323 (31%), Gaps = 86/323 (26%)

Query: 18  LRFFKFYNSFPE----MNKCKVRHSRCLESFFNELR--YFQWDG-YPLKSLPSKNIPEHL 70
              +K           +N   +++    E+    L+   +Q D  +  +S  S NI   +
Sbjct: 171 CLSYKVQCKMDFKIFWLN---LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227

Query: 71  VSLEMPHSNIEQLWNG---------VQNLAALKRLNLSYCKQL--SRIPDLSLALNLEWL 119
            S++     + +             VQN  A    NLS CK L  +R     +       
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-CKILLTTR--FKQVT------ 278

Query: 120 DLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLE 179
           D +   +    H S+ H +                   +  D +K L       L ++L+
Sbjct: 279 DFLS--AATTTHISLDHHSM-----------------TLTPDEVKSL-------LLKYLD 312

Query: 180 ISCNIENLDLSETAIEELP---SSIG-----NLSRLVRLDLTNCSRLKSV-SNSLCNLKS 230
                   DL    +   P   S I       L+        NC +L ++  +SL  L+ 
Sbjct: 313 CRPQ----DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 231 --LQYLFLSGCLKLEKLPEEIGNLES--LKIMLANETA-----ISQNLVDMSLVDCGITE 281
              + +F      L   P    ++ +  L ++  +        +   L   SLV+    E
Sbjct: 369 AEYRKMFDR----LSVFPPSA-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 282 LPESLGRSPSLKFLNLAENDFEK 304
              S+   PS+      + + E 
Sbjct: 424 STISI---PSIYLELKVKLENEY 443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 11/152 (7%)

Query: 187 LDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCL--KLEK 244
           L      IE++ +++  L     L L + + ++ +S+ L  +++L+ L L   L  K+E 
Sbjct: 30  LHGMIPPIEKMDATLSTLKACKHLAL-STNNIEKISS-LSGMENLRILSLGRNLIKKIEN 87

Query: 245 LPEEIGNLESLKIMLANETAIS-----QNLVDMSLVDCGITELPE--SLGRSPSLKFLNL 297
           L      LE L I      ++S      NL  + + +  IT   E   L     L+ L L
Sbjct: 88  LDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147

Query: 298 AENDFEKIPSSIKQLSNLLFLTLQNCKRLQSL 329
           A N            S      ++    L+ L
Sbjct: 148 AGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 30/163 (18%)

Query: 194 IEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLE 253
            EE  S +   +  V L       ++ +  +L  LK+ ++L LS    +EK    I +L 
Sbjct: 14  FEERKSVVATEAEKVELHG-MIPPIEKMDATLSTLKACKHLALSTN-NIEK----ISSLS 67

Query: 254 SLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLS 313
            ++           NL  +SL    I ++      + +L+ L ++ N    + S I++L 
Sbjct: 68  GME-----------NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASL-SGIEKLV 115

Query: 314 NLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLF 356
           NL  L + N K + +  E+             L  L  L  L 
Sbjct: 116 NLRVLYMSNNK-ITNWGEI-----------DKLAALDKLEDLL 146

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 39/177 (22%), Positives = 60/177 (33%), Gaps = 50/177 (28%)

Query: 64  KNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVG 123
                  V L      IE++   +  L A K L LS    + +I                
Sbjct: 21  VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKI---------------- 63

Query: 124 CASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCN 183
                   SS+  +  L  L+LGR   +K +    NLD++                 +  
Sbjct: 64  --------SSLSGMENLRILSLGRN-LIKKIE---NLDAV-----------------ADT 94

Query: 184 IENLDLSETAIEELPSSIGNLSRLVRLDLTNC--SRLKSVSNSLCNLKSLQYLFLSG 238
           +E L +S   I  L S I  L  L  L ++N   +    +   L  L  L+ L L+G
Sbjct: 95  LEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDK-LAALDKLEDLLLAG 149

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 32/177 (18%), Positives = 57/177 (32%), Gaps = 27/177 (15%)

Query: 181 SCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCL 240
            C    L  S+  +  +P S+ + + L+ L   N SRL++   +   L +L  L LS   
Sbjct: 17  LCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRA-EWTPTRLTNLHSLLLSHN- 74

Query: 241 KLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNLAE 299
            L  +         +            NL  + L    +  L         +L+ L L  
Sbjct: 75  HLNFISS--EAFVPVP-----------NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121

Query: 300 NDFEKIPSSI-KQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTL 355
           N    +  +  + ++ L  L L    ++   P       +          L  L  L
Sbjct: 122 NHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPV-----ELIK----DGNKLPKLMLL 168

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 17/191 (8%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLE 117
           +    ++N    +  +   +++  +   G+Q L  ++ L L    +L  I  L    NL 
Sbjct: 31  VTDAVTQNELNSIDQIIA-NNSDIKSVQGIQYLPNVRYLALGG-NKLHDISALKELTNLT 88

Query: 118 WLDLVGCASLIEIHSSI-QHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNL 174
           +L L     L  + + +   L  L  L L     L+SLP G+   L +L  L L    N 
Sbjct: 89  YLIL-TGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLA--HNQ 144

Query: 175 KRFLEIS-----CNIENLDLSETAIEELPSSI-GNLSRLVRLDLTNCSRLKSVSN-SLCN 227
            + L         N+  LDLS   ++ LP  +   L++L  L L   ++LKSV +     
Sbjct: 145 LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDR 203

Query: 228 LKSLQYLFLSG 238
           L SLQY++L  
Sbjct: 204 LTSLQYIWLHD 214

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 16/163 (9%)

Query: 180 ISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGC 239
                   +L + ++ +  +    L+ + ++   N S +KSV   +  L +++YL L G 
Sbjct: 17  AFAETIKANLKKKSVTDAVTQNE-LNSIDQIIANN-SDIKSVQ-GIQYLPNVRYLALGGN 73

Query: 240 LKLEKLP--EEIGNLESLKIMLANETAIS----QNLVDMSLVDC---GITELPESLGRSP 290
            KL  +   +E+ NL  L +      ++       L ++  +      +  LP+ +    
Sbjct: 74  -KLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKL 132

Query: 291 -SLKFLNLAENDFEKIPSSI-KQLSNLLFLTLQNCKRLQSLPE 331
            +L +LNLA N  + +P  +  +L+NL  L L   + LQSLPE
Sbjct: 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPE 174

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 51/298 (17%), Positives = 99/298 (33%), Gaps = 67/298 (22%)

Query: 86  GVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNL 145
           G Q L   + L+  +        +   +               E+ SS++ LN L  + +
Sbjct: 42  GRQVLPPSELLDHLFF--HYEFQNQRFSA--------------EVLSSLRQLN-LAGVRM 84

Query: 146 GR------CISLKSLPTGINLDSLKVLYLGGCS----NLKRFLEISCNIENLDLS----- 190
                      L S        +L  + L  C      L+  L +      L L      
Sbjct: 85  TPVKCTVVAAVLGS-----GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG 139

Query: 191 ETAIEELPSSI-GNLSRLVRLDLTNC----SRLKSVSNSLCNLKSLQYLFLSGCLKLEKL 245
             A ++L   +  +  ++  L L+N     + +  +   L    S+ +L L         
Sbjct: 140 PEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT------ 193

Query: 246 PEEIGN--LESLKIMLANETAISQNLVDMSLVDCGITE-----LPESLGRSPSLKFLNLA 298
              +G+  LE L   L      ++ L ++++   G  +     L  +    PSL+ L+L 
Sbjct: 194 --GLGDEGLELLAAQLDR----NRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247

Query: 299 ENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSL-ETLSNLSTL 355
            N+        + L +L     +   R+     L  G+ +   +   L E   NL++ 
Sbjct: 248 FNELS--SEGRQVLRDLGGA-AEGGARVVVS--LTEGTAVSEYWSVILSEVQRNLNSW 300

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 24/135 (17%), Positives = 45/135 (33%), Gaps = 26/135 (19%)

Query: 114 LNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRC-----ISLKSLPTGINL-DSLKVLY 167
             ++ +D      +      ++ L  +  + L +C       L+ L    NL  S+  + 
Sbjct: 61  YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEME 120

Query: 168 LGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCN 227
           +  C N               +++  I  L     +   L  L L++   +K     +  
Sbjct: 121 IISCGN---------------VTDKGIIAL----HHFRNLKYLFLSDLPGVKEKEKIVQA 161

Query: 228 LK-SLQYLFLSGCLK 241
            K SL  L L   LK
Sbjct: 162 FKTSLPSLELKLDLK 176

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 21/133 (15%), Positives = 58/133 (43%), Gaps = 17/133 (12%)

Query: 197 LPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLK 256
           LP+   +  ++  +D T+   +    + +  L+ ++ + L  C         I +   L+
Sbjct: 53  LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC-------HYIED-GCLE 104

Query: 257 IMLANETAISQNLVDMSLVDCG-ITEL-PESLGRSPSLKFLNLAENDFEKIPSSIKQLSN 314
             L+    + +++++M ++ CG +T+    +L    +LK+L L++         +K+   
Sbjct: 105 -RLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL------PGVKEKEK 157

Query: 315 LLFLTLQNCKRLQ 327
           ++     +   L+
Sbjct: 158 IVQAFKTSLPSLE 170

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 34/184 (18%), Positives = 68/184 (36%), Gaps = 48/184 (26%)

Query: 58  LKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKRLNLSYCKQLSRIPDLSLALNL 116
           L  +P+ N+PE +  + +  + I+ +  G       L+R++LS   Q+S +         
Sbjct: 23  LTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAP------- 73

Query: 117 EWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKR 176
                           + Q L  L  L L     +  LP  +  + L  L          
Sbjct: 74  ---------------DAFQGLRSLNSLVLYGN-KITELPKSL-FEGLFSL---------- 106

Query: 177 FLEISCNIENLDLSETAIEELPSSI-GNLSRLVRLDLTNCSRLKSVSN-SLCNLKSLQYL 234
                   + L L+   I  L      +L  L  L L + ++L++++  +   L+++Q +
Sbjct: 107 --------QLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTM 157

Query: 235 FLSG 238
            L+ 
Sbjct: 158 HLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 32/148 (21%), Positives = 62/148 (41%), Gaps = 21/148 (14%)

Query: 180 ISCNIENLDLSETAIEELPSSI-GNLSRLVRLDLTNCSRLKSVSNSLCN-LKSLQYLFLS 237
           +   I  + L +  I+ +P        +L R+DL+N +++  ++      L+SL  L L 
Sbjct: 30  LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQGLRSLNSLVLY 88

Query: 238 GCLKLEKLPEEI-GNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRS-PSLKFL 295
           G  K+ +LP+ +   L SL+++L     ++ N          I  L     +   +L  L
Sbjct: 89  GN-KITELPKSLFEGLFSLQLLL-----LNAN---------KINCLRVDAFQDLHNLNLL 133

Query: 296 NLAENDFEKIPSSI-KQLSNLLFLTLQN 322
           +L +N  + I       L  +  + L  
Sbjct: 134 SLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 55/345 (15%), Positives = 109/345 (31%), Gaps = 75/345 (21%)

Query: 66  IPEHLVSLEMPHSNIEQLWNGVQNLAA--------LKRLNLSYCK-QLSRIPDLSLAL-- 114
           IP  + SL++  +N+         L          +  LNLS          +L   L  
Sbjct: 20  IPHGVTSLDLSLNNLYS--ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 115 ---NLEWLDLVGC----ASLIEIHSSIQHLN-KLVFLNLGRCI-----------SLKSLP 155
              N+  L+L G      S  E+  ++  +   +  L+LG              +  +LP
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 156 TGINLDSLKVLYLG-------GCSNLKRFLE-ISCNIENLDLSETAI-----EELPSSIG 202
                 S+  L L            L + L  I  N+ +L+L    +      EL   + 
Sbjct: 138 A-----SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLA 192

Query: 203 NL-SRLVRLDLTNC----SRLKSVSNSL-CNLKSLQYLFLSGCLKLEKLPEEIGN--LES 254
           ++ + +  LDL+           ++         +  L L            +    LE+
Sbjct: 193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN--------CLHGPSLEN 244

Query: 255 LKIMLANETAISQ-NLVDMSLVDCG---ITELPESLGRSPSLKFLNLAENDFEKIPSSIK 310
           LK++  +   +    L    + +        L  +      +  ++    +    PS   
Sbjct: 245 LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH--PSHSI 302

Query: 311 QLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTL 355
            +SNL+    +   +      L        ++ T++E L+    L
Sbjct: 303 PISNLI---RELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDEL 344

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 38/252 (15%), Positives = 78/252 (30%), Gaps = 40/252 (15%)

Query: 150 SLKSLPTGINLDSLKVLYLGGCSNLKRFLEISC---NIENLDLSETAIEELPSSIGNLSR 206
           +L S+ T    +S+  L L G  N + F  +     +++ LD+S   I+      G    
Sbjct: 14  TLISMMTEEEANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYP- 72

Query: 207 LVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEK--LPE---EIG--------NLE 253
               +      + +   +     ++      G   LEK  L E    I         NL+
Sbjct: 73  ----NGKFYIYMANFVPA-YAFSNVVNGVTKGKQTLEKVILSEKIKNIEDAAFKGCDNLK 127

Query: 254 SLKIMLANETAISQNLVDMSL----VDCGITELPESLGRSPSLKFLNLAENDFEKIPSSI 309
             +I       +    +  S+    +  G ++      R     F+     +      ++
Sbjct: 128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM 187

Query: 310 KQLSNLLFLTLQNCKRLQSLPELPCGSNI-------FARYCTSLETLSNLSTLFTRSSEL 362
            +L + +    +   + + +  L     +          Y  +L +L    T  T   + 
Sbjct: 188 GKLEDEIM---KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD- 243

Query: 363 WQAFDFCNCFKL 374
              F F     L
Sbjct: 244 ---FTFAQKKYL 252

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 34/142 (23%), Positives = 51/142 (35%), Gaps = 28/142 (19%)

Query: 186 NLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSG---CLKL 242
            LD  ++   ++         L  L L N   L SVSN L  L  L+ L LS       L
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSN-LPKLPKLKKLELSENRIFGGL 87

Query: 243 EKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPE--SLGRSPSLKFLNLAEN 300
           + L E++ NL  L                 +L    + ++     L +   LK L+L   
Sbjct: 88  DMLAEKLPNLTHL-----------------NLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

Query: 301 DFEKIP----SSIKQLSNLLFL 318
           +   +     S  K L  L +L
Sbjct: 131 EVTNLNDYRESVFKLLPQLTYL 152

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 35/142 (24%), Positives = 50/142 (35%), Gaps = 28/142 (19%)

Query: 186 NLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSG---CLKL 242
            LD S +   +L         L  L   N   L S++N L  L  L+ L LS       L
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIAN-LPKLNKLKKLELSDNRVSGGL 80

Query: 243 EKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPE--SLGRSPSLKFLNLAEN 300
           E L E+  NL  L                 +L    I +L     L +  +LK L+L   
Sbjct: 81  EVLAEKCPNLTHL-----------------NLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

Query: 301 DFEKIP----SSIKQLSNLLFL 318
           +   +     +  K L  L +L
Sbjct: 124 EVTNLNDYRENVFKLLPQLTYL 145

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 12/112 (10%)

Query: 135 QHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEISC-----NIENL 187
             L  L  L LG    L +LP G+  +L  L VL LG  +N    L  +      +++ L
Sbjct: 61  DSLINLKELYLGS-NQLGALPVGVFDSLTQLTVLDLG--TNQLTVLPSAVFDRLVHLKEL 117

Query: 188 DLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSN-SLCNLKSLQYLFLSG 238
            +    + ELP  I  L+ L  L L   ++LKS+ + +   L SL + +L G
Sbjct: 118 FMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFG 168

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 17/108 (15%), Positives = 32/108 (29%), Gaps = 15/108 (13%)

Query: 196 ELPSSIGNLSRLVRLDLTNCSRLKSV-SNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLES 254
           +    +     L  L + N   L+ +    L  L  L+ L +     L  +  +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDA--FHF 78

Query: 255 LKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDF 302
                         L  ++L    +  L     +  SL+ L L+ N  
Sbjct: 79  TP-----------RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 20/127 (15%), Positives = 48/127 (37%), Gaps = 18/127 (14%)

Query: 182 CNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLK 241
                LDL    I  + +    L +   +D ++   ++ +      L+ L+ L ++   +
Sbjct: 19  VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKLDG-FPLLRRLKTLLVNNN-R 75

Query: 242 LEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPE--SLGRSPSLKFLNLAE 299
           + ++ E +   ++L            +L ++ L +  + EL +   L    SL +L +  
Sbjct: 76  ICRIGEGL--DQALP-----------DLTELILTNNSLVELGDLDPLASLKSLTYLCILR 122

Query: 300 NDFEKIP 306
           N      
Sbjct: 123 NPVTNKK 129

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.1 bits (95), Expect = 7e-04
 Identities = 27/184 (14%), Positives = 61/184 (33%), Gaps = 33/184 (17%)

Query: 171 CSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKS 230
            ++ +       + E  ++S     +L   +  +  L  L +   + L        NLKS
Sbjct: 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKS 197

Query: 231 LQYLFLSGCLKLEKLPEEIG-----NLESLKIMLANETAIS----------------QNL 269
           L+   +      + + E+I      NLE L + +  E                     NL
Sbjct: 198 LE---IISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNL 254

Query: 270 VDMSLVDCGIT-ELPESLGRSP---SLKFLNLAENDF-----EKIPSSIKQLSNLLFLTL 320
             + +VD      + E    S     L+ ++++           +   + ++ +L F+ +
Sbjct: 255 KWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314

Query: 321 QNCK 324
           +   
Sbjct: 315 KYNY 318

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	583
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.95
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.91
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.88
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.88
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.87
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.86
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.86
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.85
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.84
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.83
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.82
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.81
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.79
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.79
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.78
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.77
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.76
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.76
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.75
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.74
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.74
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.74
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.73
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.72
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.7
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.69
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.67
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.67
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.66
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.66
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.66
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.65
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.65
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.62
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.58
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.58
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.57
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.57
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.56
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.55
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.54
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.53
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.49
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.48
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.48
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.48
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.48
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.48
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.47
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.47
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.46
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.46
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.46
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.45
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.39
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.37
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.36
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.32
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.32
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.31
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.29
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.28
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.26
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.25
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.24
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.24
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.2
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.19
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.09
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.03
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.01
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.97
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.95
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.93
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.93
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.81
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.68
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.66
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.65
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.58
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.51
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.47
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.35
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.29
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.16
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.04
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.96
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.86
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.78
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.59
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.47
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.41
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.32
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.53
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.42
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.05
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=4.8e-31  Score=300.55  Aligned_cols=332  Identities=21%  Similarity=0.265  Sum_probs=233.3

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCC-CCCCCC-CCCCceEEEccCCChh-hhccc-ccC
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLK-SLPSKN-IPEHLVSLEMPHSNIE-QLWNG-VQN   89 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-~lp~~~-~~~~L~~L~L~~~~l~-~l~~~-~~~   89 (583)
                      .+++|+.|++++|.     ....+|..+....++|++|++++|.+. .+|..+ .+++|++|++++|.+. .+|.. +..
T Consensus       267 ~l~~L~~L~L~~n~-----l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~  341 (768)
T 3rgz_A          267 PLKSLQYLSLAENK-----FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK  341 (768)
T ss_dssp             CCTTCCEEECCSSE-----EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTT
T ss_pred             ccCCCCEEECcCCc-----cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhc
Confidence            46667777776663     233555555544346666666666654 444444 5566666666666655 45443 555


Q ss_pred             CCCccEEeccCCCCCCCCC--------------------------CCCC--CCCcCEEeeeCCCCchhhhhhccCCCCCC
Q 036772           90 LAALKRLNLSYCKQLSRIP--------------------------DLSL--ALNLEWLDLVGCASLIEIHSSIQHLNKLV  141 (583)
Q Consensus        90 l~~L~~L~Ls~~~~l~~~p--------------------------~l~~--l~~L~~L~L~~~~~l~~~~~~i~~l~~L~  141 (583)
                      +++|++|++++|.....+|                          .+..  +++|++|++++|.....+|..++.+++|+
T Consensus       342 l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~  421 (768)
T 3rgz_A          342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV  421 (768)
T ss_dssp             CTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCC
T ss_pred             CCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCC
Confidence            5566666665554432222                          2222  55677777777766667777788888888


Q ss_pred             EEEccCCCCCCcCCCcC-CCCCccEEEecCCCCccccccc---CCCcCEEeccCCCCc-cccccccCCCCccEEeeeCCC
Q 036772          142 FLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEI---SCNIENLDLSETAIE-ELPSSIGNLSRLVRLDLTNCS  216 (583)
Q Consensus       142 ~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~~---~~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~  216 (583)
                      .|++++|...+.+|..+ .+++|++|++++|.....+|..   ..+|+.|++++|.++ .+|..++.+++|++|++++|.
T Consensus       422 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~  501 (768)
T 3rgz_A          422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR  501 (768)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             EEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc
Confidence            88888865555667666 7888888888887765555543   467888888888887 567778888888888888888


Q ss_pred             CCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccc------------------------------
Q 036772          217 RLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAIS------------------------------  266 (583)
Q Consensus       217 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~------------------------------  266 (583)
                      ....+|..++.+++|++|++++|...+.+|..++.+++|+.|++++|.+.                              
T Consensus       502 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~  581 (768)
T 3rgz_A          502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND  581 (768)
T ss_dssp             CCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECC
T ss_pred             cCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccc
Confidence            87788888888888888888888877788888888888888888887654                              


Q ss_pred             --------------------------------------------------cCccEEEeccCCCcc-cCccCCCCCCCCEE
Q 036772          267 --------------------------------------------------QNLVDMSLVDCGITE-LPESLGRSPSLKFL  295 (583)
Q Consensus       267 --------------------------------------------------~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L  295 (583)
                                                                        ..|+.|++++|.+++ +|..++.+++|+.|
T Consensus       582 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  661 (768)
T 3rgz_A          582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL  661 (768)
T ss_dssp             SCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEE
T ss_pred             cccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEE
Confidence                                                              125678888888875 77788888888888


Q ss_pred             EccCCCCc-ccChhhhccCcccccccccccccccCCCCCCCCeeeeeCCcCcccccCcccccccccccc
Q 036772          296 NLAENDFE-KIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSELW  363 (583)
Q Consensus       296 ~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~~l~~~~c~sL~~l~~l~~l~~~~~~~~  363 (583)
                      +|++|.++ .+|..++.+++|+.|+|++|+--..+|             ..+..++.|+.+.++.|.+.
T Consensus       662 ~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip-------------~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP-------------QAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC-------------GGGGGCCCCSEEECCSSEEE
T ss_pred             eCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC-------------hHHhCCCCCCEEECcCCccc
Confidence            88888887 778888888888888888875444555             45666777777776666543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=4.2e-30  Score=286.47  Aligned_cols=282  Identities=17%  Similarity=0.154  Sum_probs=185.2

Q ss_pred             cCCcccccCCCccEEEecCCCCCC------------------CCCCCC---CCCceEEEccCCChh-hhcccccCCCCcc
Q 036772           37 HSRCLESFFNELRYFQWDGYPLKS------------------LPSKNI---PEHLVSLEMPHSNIE-QLWNGVQNLAALK   94 (583)
Q Consensus        37 l~~~l~~l~~~Lr~L~l~~~~l~~------------------lp~~~~---~~~L~~L~L~~~~l~-~l~~~~~~l~~L~   94 (583)
                      +|..+..+ ++|++|++++|.++.                  +|..+.   +++|++|++++|.+. .+|..+.++++|+
T Consensus       198 ip~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  276 (636)
T 4eco_A          198 VSKAVMRL-TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ  276 (636)
T ss_dssp             ECGGGGGC-TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred             CCHHHhcc-cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence            55566666 367777777777666                  666543   667777777776654 4566667777777


Q ss_pred             EEeccCCC-CCC-CCC-CCCCC------CCcCEEeeeCCCCchhhhh--hccCCCCCCEEEccCCCCCCcCCCcC-CCCC
Q 036772           95 RLNLSYCK-QLS-RIP-DLSLA------LNLEWLDLVGCASLIEIHS--SIQHLNKLVFLNLGRCISLKSLPTGI-NLDS  162 (583)
Q Consensus        95 ~L~Ls~~~-~l~-~~p-~l~~l------~~L~~L~L~~~~~l~~~~~--~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~  162 (583)
                      +|+|++|+ ... .+| .++.+      ++|++|++++|... .+|.  .++.+++|+.|++++|...+.+| .+ .+++
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~  354 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIK  354 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCC
Confidence            77777775 332 344 24333      67777777776544 6666  67777777777777644333666 44 6677


Q ss_pred             ccEEEecCCCCcccccccC---CC-cCEEeccCCCCccccccccCCC--CccEEeeeCCCCCcccccccc-------CCC
Q 036772          163 LKVLYLGGCSNLKRFLEIS---CN-IENLDLSETAIEELPSSIGNLS--RLVRLDLTNCSRLKSVSNSLC-------NLK  229 (583)
Q Consensus       163 L~~L~L~~c~~l~~~~~~~---~~-L~~L~L~~~~i~~lp~~i~~l~--~L~~L~L~~~~~l~~lp~~l~-------~l~  229 (583)
                      |++|++++|. +..+|..+   .+ |+.|++++|.++.+|..+..++  +|+.|++++|......|..+.       .++
T Consensus       355 L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~  433 (636)
T 4eco_A          355 LASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI  433 (636)
T ss_dssp             ESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred             CCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence            7777777653 33444332   34 7777777777777776665544  677777777776666666666       666


Q ss_pred             CCcEEEccCCCCCCccccc-cCCCCcccEEEccCCcccc-----------------CccEEEeccCCCcccCccCC--CC
Q 036772          230 SLQYLFLSGCLKLEKLPEE-IGNLESLKIMLANETAISQ-----------------NLVDMSLVDCGITELPESLG--RS  289 (583)
Q Consensus       230 ~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~~~i~~-----------------~L~~L~L~~~~l~~lp~~l~--~l  289 (583)
                      +|++|++++|... .+|.. +..+++|+.|++++|.+..                 .|+.|++++|.++.+|..+.  .+
T Consensus       434 ~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l  512 (636)
T 4eco_A          434 NVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTL  512 (636)
T ss_dssp             CEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTC
T ss_pred             CCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccC
Confidence            7777777776554 44443 4457777777777766541                 46777777777777777665  77


Q ss_pred             CCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772          290 PSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       290 ~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c  323 (583)
                      ++|+.|+|++|.++.+|..+..+++|+.|++++|
T Consensus       513 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N  546 (636)
T 4eco_A          513 PYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ  546 (636)
T ss_dssp             TTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSC
T ss_pred             CCcCEEECCCCCCCCcChhhhcCCCCCEEECCCC
Confidence            7777777777777777777777777777777543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=1.1e-29  Score=289.39  Aligned_cols=284  Identities=22%  Similarity=0.264  Sum_probs=202.2

Q ss_pred             CccEEEecCCCCCCCCCCCCCCCceEEEccCCChh-hhcccccCC-CCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeC
Q 036772           47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIE-QLWNGVQNL-AALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVG  123 (583)
Q Consensus        47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~-~l~~~~~~l-~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~  123 (583)
                      +|++|++++|.+....+...+++|++|++++|.+. .+|..+... ++|++|+|++|.....+| .++.+++|++|++++
T Consensus       248 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~  327 (768)
T 3rgz_A          248 ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS  327 (768)
T ss_dssp             SCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCS
T ss_pred             CCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCC
Confidence            44444444444332222224445555555555554 444444433 666666666665554444 356666666666666


Q ss_pred             CCCchhhhhh-ccCCCCCCEEEccCCCCCCcCCCcC-CCC-CccEEEecCCCCccccccc-----CCCcCEEeccCCCCc
Q 036772          124 CASLIEIHSS-IQHLNKLVFLNLGRCISLKSLPTGI-NLD-SLKVLYLGGCSNLKRFLEI-----SCNIENLDLSETAIE  195 (583)
Q Consensus       124 ~~~l~~~~~~-i~~l~~L~~L~L~~c~~l~~lp~~~-~l~-~L~~L~L~~c~~l~~~~~~-----~~~L~~L~L~~~~i~  195 (583)
                      |.....+|.. ++.+++|++|++++|.....+|..+ .++ +|++|++++|.....+|..     ..+|+.|++++|.++
T Consensus       328 n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~  407 (768)
T 3rgz_A          328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT  407 (768)
T ss_dssp             SEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEE
T ss_pred             CcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccc
Confidence            6554455543 6666666666666654333555555 444 6777777666544333433     346888888888887


Q ss_pred             -cccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccC------
Q 036772          196 -ELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQN------  268 (583)
Q Consensus       196 -~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~------  268 (583)
                       .+|..++.+++|+.|++++|.....+|..+.++++|++|++++|...+.+|..+..+++|+.|++++|.+...      
T Consensus       408 ~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~  487 (768)
T 3rgz_A          408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS  487 (768)
T ss_dssp             EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred             cccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh
Confidence             6788899999999999999988778888999999999999999988888999999999999999999887642      


Q ss_pred             ----ccEEEeccCCCcc-cCccCCCCCCCCEEEccCCCCc-ccChhhhccCcccccccccccccccCC
Q 036772          269 ----LVDMSLVDCGITE-LPESLGRSPSLKFLNLAENDFE-KIPSSIKQLSNLLFLTLQNCKRLQSLP  330 (583)
Q Consensus       269 ----L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp  330 (583)
                          |+.|++++|.+++ +|.+++.+++|++|+|++|.++ .+|..++.+++|+.|++++|+-...+|
T Consensus       488 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip  555 (768)
T 3rgz_A          488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP  555 (768)
T ss_dssp             GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred             cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence                8999999999985 8889999999999999999998 889999999999999999987655666

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.96  E-value=2.3e-28  Score=271.15  Aligned_cols=305  Identities=21%  Similarity=0.204  Sum_probs=197.7

Q ss_pred             cCCCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChhhh-ccccc
Q 036772           12 MFRMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQL-WNGVQ   88 (583)
Q Consensus        12 ~~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l-~~~~~   88 (583)
                      +.++++||.|++++|.     .....|..+..+ ++|++|++++|.+..+++ .+ .+++|++|++++|.++.+ +..+.
T Consensus        53 ~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~  126 (606)
T 3t6q_A           53 FSRLINLTFLDLTRCQ-----IYWIHEDTFQSQ-HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH  126 (606)
T ss_dssp             STTCTTCSEEECTTCC-----CCEECTTTTTTC-TTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCT
T ss_pred             hccCccceEEECCCCc-----cceeChhhccCc-cccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhc
Confidence            3488999999998885     334457778888 589999999999887744 45 789999999999999987 56689


Q ss_pred             CCCCccEEeccCCCCCC-CCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCC--EEEccCCCCCCcCCCcCCCCCccE
Q 036772           89 NLAALKRLNLSYCKQLS-RIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLV--FLNLGRCISLKSLPTGINLDSLKV  165 (583)
Q Consensus        89 ~l~~L~~L~Ls~~~~l~-~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~--~L~L~~c~~l~~lp~~~~l~~L~~  165 (583)
                      ++++|++|++++|.... ..|.+..+++|++|++++|......+..++.+++|+  .|++++|......|..+...+|++
T Consensus       127 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~  206 (606)
T 3t6q_A          127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS  206 (606)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEE
T ss_pred             cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccc
Confidence            99999999999997666 446677799999999999877666678889999999  899998654444444446677777


Q ss_pred             EEecCCCCccccccc-----------------------------C--CCcCEEeccCCCCcccccc-ccCCCCccEEeee
Q 036772          166 LYLGGCSNLKRFLEI-----------------------------S--CNIENLDLSETAIEELPSS-IGNLSRLVRLDLT  213 (583)
Q Consensus       166 L~L~~c~~l~~~~~~-----------------------------~--~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~  213 (583)
                      |++++|..+...+..                             .  .+++.|++++|.++.++.. ++.+++|++|+++
T Consensus       207 L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  286 (606)
T 3t6q_A          207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT  286 (606)
T ss_dssp             EECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECT
T ss_pred             cccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEecc
Confidence            777776522111100                             0  0345555555555555443 5555555555555


Q ss_pred             CCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcccc-----------CccEEEeccCCCccc
Q 036772          214 NCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ-----------NLVDMSLVDCGITEL  282 (583)
Q Consensus       214 ~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~-----------~L~~L~L~~~~l~~l  282 (583)
                      +|.. ..+|..+.++++|++|++++|......|..+..+++|+.|++++|.+..           .|+.|++++|.+.++
T Consensus       287 ~n~l-~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  365 (606)
T 3t6q_A          287 ATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS  365 (606)
T ss_dssp             TSCC-SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCcc-CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccc
Confidence            5533 2455555555555555555554444444455555555555555554331           155555555555543


Q ss_pred             ---CccCCCCCCCCEEEccCCCCccc-ChhhhccCcccccccccc
Q 036772          283 ---PESLGRSPSLKFLNLAENDFEKI-PSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       283 ---p~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c  323 (583)
                         +..++.+++|++|++++|.++.+ |..+..+++|+.|++++|
T Consensus       366 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  410 (606)
T 3t6q_A          366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT  410 (606)
T ss_dssp             EESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred             cCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence               44455555555555555555533 334555555555555555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=5.4e-29  Score=277.57  Aligned_cols=315  Identities=17%  Similarity=0.181  Sum_probs=261.6

Q ss_pred             ceEEEEEecCCCCCcceEEEecCCCCCCcccee-----------------cCCccc--ccCCCccEEEecCCCC-CCCCC
Q 036772            4 AIEGISLDMFRMRRLRFFKFYNSFPEMNKCKVR-----------------HSRCLE--SFFNELRYFQWDGYPL-KSLPS   63 (583)
Q Consensus         4 ~ve~i~ld~~~m~~Lr~L~l~~~~~~~~~~~~~-----------------l~~~l~--~l~~~Lr~L~l~~~~l-~~lp~   63 (583)
                      .+.||.-.+.++++|+.|++++|.+     ...                 +|..+.  .+ ++|++|++++|.+ ..+|.
T Consensus       194 ~l~~ip~~l~~l~~L~~L~Ls~n~l-----~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l-~~L~~L~L~~n~l~~~~p~  267 (636)
T 4eco_A          194 NITFVSKAVMRLTKLRQFYMGNSPF-----VAENICEAWENENSEYAQQYKTEDLKWDNL-KDLTDVEVYNCPNLTKLPT  267 (636)
T ss_dssp             EEEEECGGGGGCTTCCEEEEESCCC-----CGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEECCTTCSSCCT
T ss_pred             CCccCCHHHhcccCCCEEECcCCcc-----ccccccccccccccchhcccCchhhhhccc-CCCCEEEecCCcCCccChH
Confidence            5667655567999999999999964     221                 899888  88 5999999999985 56887


Q ss_pred             CC-CCCCceEEEccCCC-hhh--hcccccCC------CCccEEeccCCCCCCCCCC---CCCCCCcCEEeeeCCCCchhh
Q 036772           64 KN-IPEHLVSLEMPHSN-IEQ--LWNGVQNL------AALKRLNLSYCKQLSRIPD---LSLALNLEWLDLVGCASLIEI  130 (583)
Q Consensus        64 ~~-~~~~L~~L~L~~~~-l~~--l~~~~~~l------~~L~~L~Ls~~~~l~~~p~---l~~l~~L~~L~L~~~~~l~~~  130 (583)
                      .+ .+++|++|++++|+ ++.  +|..+..+      ++|++|+|++|... .+|.   ++.+++|++|++++|.....+
T Consensus       268 ~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~i  346 (636)
T 4eco_A          268 FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKL  346 (636)
T ss_dssp             TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred             HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccch
Confidence            76 89999999999998 874  88877665      99999999999877 7776   899999999999998877688


Q ss_pred             hhhccCCCCCCEEEccCCCCCCcCCCcC-CCCC-ccEEEecCCCCcccccccCC-----CcCEEeccCCCCcc-cccccc
Q 036772          131 HSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDS-LKVLYLGGCSNLKRFLEISC-----NIENLDLSETAIEE-LPSSIG  202 (583)
Q Consensus       131 ~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~-L~~L~L~~c~~l~~~~~~~~-----~L~~L~L~~~~i~~-lp~~i~  202 (583)
                      | .++.+++|+.|++++| .+..+|..+ .+++ |++|++++|. +..+|..+.     +|+.|++++|.++. +|..+.
T Consensus       347 p-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  423 (636)
T 4eco_A          347 P-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD  423 (636)
T ss_dssp             C-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred             h-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence            8 8999999999999985 566899888 8888 9999999976 447776543     68899999999985 566677


Q ss_pred             -------CCCCccEEeeeCCCCCcccccc-ccCCCCCcEEEccCCCCCCccccccCC--------CCcccEEEccCCccc
Q 036772          203 -------NLSRLVRLDLTNCSRLKSVSNS-LCNLKSLQYLFLSGCLKLEKLPEEIGN--------LESLKIMLANETAIS  266 (583)
Q Consensus       203 -------~l~~L~~L~L~~~~~l~~lp~~-l~~l~~L~~L~l~~c~~l~~lp~~l~~--------l~~L~~L~l~~~~i~  266 (583)
                             .+++|++|++++|... .+|.. +..+++|++|++++|... .+|.....        +++|+.|++++|.+.
T Consensus       424 ~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  501 (636)
T 4eco_A          424 PLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT  501 (636)
T ss_dssp             TTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred             ccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC
Confidence                   7889999999998776 56654 456899999999998765 66654332        339999999998765


Q ss_pred             c-----------CccEEEeccCCCcccCccCCCCCCCCEEEcc------CCCCc-ccChhhhccCccccccccccccccc
Q 036772          267 Q-----------NLVDMSLVDCGITELPESLGRSPSLKFLNLA------ENDFE-KIPSSIKQLSNLLFLTLQNCKRLQS  328 (583)
Q Consensus       267 ~-----------~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls------~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~  328 (583)
                      .           .|+.|++++|.++++|..+..+++|+.|+|+      +|.+. .+|..+..+++|+.|++++|. +++
T Consensus       502 ~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~  580 (636)
T 4eco_A          502 KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRK  580 (636)
T ss_dssp             BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCB
T ss_pred             ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCc
Confidence            3           2899999999999999999999999999995      45554 889999999999999999985 488


Q ss_pred             CCC
Q 036772          329 LPE  331 (583)
Q Consensus       329 lp~  331 (583)
                      +|.
T Consensus       581 ip~  583 (636)
T 4eco_A          581 VNE  583 (636)
T ss_dssp             CCS
T ss_pred             cCH
Confidence            874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.1e-28  Score=268.69  Aligned_cols=166  Identities=23%  Similarity=0.350  Sum_probs=136.7

Q ss_pred             CcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCC--ccccccCCCCcccEEEc
Q 036772          183 NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLE--KLPEEIGNLESLKIMLA  260 (583)
Q Consensus       183 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l  260 (583)
                      +|+.|+++++.+..++. ...+++|++|++++|......|..+.++++|++|++++|...+  .+|..+..+++|+.|++
T Consensus       303 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L  381 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI  381 (520)
T ss_dssp             CCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred             ceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence            46667777766655442 2688999999999998888788899999999999999987765  66778999999999999


Q ss_pred             cCCcccc-----------CccEEEeccCCCcc-cCccCCCCCCCCEEEccCCCCcccChhhhccCccccccccccccccc
Q 036772          261 NETAISQ-----------NLVDMSLVDCGITE-LPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQS  328 (583)
Q Consensus       261 ~~~~i~~-----------~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~  328 (583)
                      ++|.+..           .|+.|++++|.+++ +|..+.  ++|+.|++++|.++.+|..+..+++|+.|++++| +++.
T Consensus       382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~  458 (520)
T 2z7x_B          382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN-QLKS  458 (520)
T ss_dssp             CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCCC
T ss_pred             CCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCC-cCCc
Confidence            9998875           28999999999866 555554  7999999999999999999999999999999998 5677


Q ss_pred             CCCCCCCCeeeeeCCcCcccccCcccccccccccce
Q 036772          329 LPELPCGSNIFARYCTSLETLSNLSTLFTRSSELWQ  364 (583)
Q Consensus       329 lp~lp~~~~l~~~~c~sL~~l~~l~~l~~~~~~~~~  364 (583)
                      +|.            ..+..+++|+.+.+.+|++.+
T Consensus       459 l~~------------~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          459 VPD------------GIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             CCT------------TTTTTCTTCCEEECCSSCBCC
T ss_pred             cCH------------HHhccCCcccEEECcCCCCcc
Confidence            663            136667788888888888754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=4e-28  Score=276.30  Aligned_cols=282  Identities=17%  Similarity=0.165  Sum_probs=217.5

Q ss_pred             cCCcccccCCCccEEEecCCCCCC------------------CCCCC---CCCCceEEEccCCChh-hhcccccCCCCcc
Q 036772           37 HSRCLESFFNELRYFQWDGYPLKS------------------LPSKN---IPEHLVSLEMPHSNIE-QLWNGVQNLAALK   94 (583)
Q Consensus        37 l~~~l~~l~~~Lr~L~l~~~~l~~------------------lp~~~---~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~   94 (583)
                      +|..+..+ ++|++|++++|.++.                  +|..+   .+++|++|++++|.+. .+|..+.++++|+
T Consensus       440 IP~~l~~L-~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~  518 (876)
T 4ecn_A          440 ISKAIQRL-TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ  518 (876)
T ss_dssp             ECGGGGGC-TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred             hhHHHhcC-CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence            67777777 488888888888887                  88775   5888888888888754 6777788888888


Q ss_pred             EEeccCCC-CCC-CCC--------CCCCCCCcCEEeeeCCCCchhhhh--hccCCCCCCEEEccCCCCCCcCCCcC-CCC
Q 036772           95 RLNLSYCK-QLS-RIP--------DLSLALNLEWLDLVGCASLIEIHS--SIQHLNKLVFLNLGRCISLKSLPTGI-NLD  161 (583)
Q Consensus        95 ~L~Ls~~~-~l~-~~p--------~l~~l~~L~~L~L~~~~~l~~~~~--~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~  161 (583)
                      .|+|++|+ ... .+|        .+..+++|++|+|++|... .+|.  .++.+++|+.|+|++| .+..+| .+ .++
T Consensus       519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~~~~L~  595 (876)
T 4ecn_A          519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHN-KVRHLE-AFGTNV  595 (876)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTS-CCCBCC-CCCTTS
T ss_pred             EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCC-Ccccch-hhcCCC
Confidence            88888887 333 344        2344568888888887765 7777  8888888888888885 455888 45 788


Q ss_pred             CccEEEecCCCCcccccccC---CC-cCEEeccCCCCccccccccCCCC--ccEEeeeCCCCCccccc---ccc--CCCC
Q 036772          162 SLKVLYLGGCSNLKRFLEIS---CN-IENLDLSETAIEELPSSIGNLSR--LVRLDLTNCSRLKSVSN---SLC--NLKS  230 (583)
Q Consensus       162 ~L~~L~L~~c~~l~~~~~~~---~~-L~~L~L~~~~i~~lp~~i~~l~~--L~~L~L~~~~~l~~lp~---~l~--~l~~  230 (583)
                      +|+.|++++|..- .+|..+   .+ |+.|++++|.++.+|..+..++.  |+.|++++|.....+|.   .+.  .+++
T Consensus       596 ~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~  674 (876)
T 4ecn_A          596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN  674 (876)
T ss_dssp             EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred             cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence            8888888886543 666443   45 88888888888888887776654  88888888877655443   222  3457


Q ss_pred             CcEEEccCCCCCCcccccc-CCCCcccEEEccCCcccc-----------------CccEEEeccCCCcccCccCC--CCC
Q 036772          231 LQYLFLSGCLKLEKLPEEI-GNLESLKIMLANETAISQ-----------------NLVDMSLVDCGITELPESLG--RSP  290 (583)
Q Consensus       231 L~~L~l~~c~~l~~lp~~l-~~l~~L~~L~l~~~~i~~-----------------~L~~L~L~~~~l~~lp~~l~--~l~  290 (583)
                      |+.|++++|... .+|..+ ..+++|+.|++++|.+..                 .|+.|+|++|.++.+|..+.  .++
T Consensus       675 L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~  753 (876)
T 4ecn_A          675 ASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP  753 (876)
T ss_dssp             EEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCT
T ss_pred             cCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCC
Confidence            888999887655 566654 478889999998877542                 47889999999888888887  889


Q ss_pred             CCCEEEccCCCCcccChhhhccCccccccccccc
Q 036772          291 SLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCK  324 (583)
Q Consensus       291 ~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~  324 (583)
                      +|+.|+|++|.++.+|..+..+++|+.|+|++|+
T Consensus       754 ~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~  787 (876)
T 4ecn_A          754 YLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR  787 (876)
T ss_dssp             TCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB
T ss_pred             CcCEEEeCCCCCCccchhhhcCCCCCEEECCCCC
Confidence            9999999999998888888899999999987743

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=5.7e-28  Score=268.01  Aligned_cols=106  Identities=20%  Similarity=0.234  Sum_probs=67.5

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCC-CCCC-CCCCceEEEccCCChhhhc-ccccCC
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSL-PSKN-IPEHLVSLEMPHSNIEQLW-NGVQNL   90 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~l~~l~-~~~~~l   90 (583)
                      ++++||.|++++|.     .....|..+..+ ++|++|++++|.++.+ |..+ .+++|++|++++|.+..++ ..+.++
T Consensus        54 ~l~~L~~L~Ls~n~-----l~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  127 (606)
T 3vq2_A           54 NFSELQWLDLSRCE-----IETIEDKAWHGL-HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQL  127 (606)
T ss_dssp             TCTTCCEEECTTCC-----CCEECTTTTTTC-TTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTC
T ss_pred             CCccCcEEeCCCCc-----ccccCHHHhhch-hhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCC
Confidence            67777777777664     222234556666 4777777777777766 4444 6677777777777776665 446677


Q ss_pred             CCccEEeccCCCCCC-CCC-CCCCCCCcCEEeeeCCC
Q 036772           91 AALKRLNLSYCKQLS-RIP-DLSLALNLEWLDLVGCA  125 (583)
Q Consensus        91 ~~L~~L~Ls~~~~l~-~~p-~l~~l~~L~~L~L~~~~  125 (583)
                      ++|++|++++|.... .+| .++.+++|++|++++|.
T Consensus       128 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A          128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred             CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence            777777777775543 334 36666666666666654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=5.1e-28  Score=268.39  Aligned_cols=301  Identities=22%  Similarity=0.183  Sum_probs=196.7

Q ss_pred             CCCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChh--hhccccc
Q 036772           13 FRMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIE--QLWNGVQ   88 (583)
Q Consensus        13 ~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~--~l~~~~~   88 (583)
                      .++++||+|++++|.     .....|..+..+ .+|++|++++|.++.+|. .+ .+++|++|++++|.+.  .+|..+.
T Consensus        77 ~~l~~L~~L~Ls~n~-----l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~  150 (606)
T 3vq2_A           77 HGLHHLSNLILTGNP-----IQSFSPGSFSGL-TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS  150 (606)
T ss_dssp             TTCTTCCEEECTTCC-----CCCCCTTSSTTC-TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred             hchhhcCEeECCCCc-----ccccChhhcCCc-ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHh
Confidence            489999999999885     233347788888 589999999999998884 34 8899999999999998  4788899


Q ss_pred             CCCCccEEeccCCCCCCCCCC-CC---------------------------CCCCcCEEeeeCCCCc-------------
Q 036772           89 NLAALKRLNLSYCKQLSRIPD-LS---------------------------LALNLEWLDLVGCASL-------------  127 (583)
Q Consensus        89 ~l~~L~~L~Ls~~~~l~~~p~-l~---------------------------~l~~L~~L~L~~~~~l-------------  127 (583)
                      ++++|++|++++|......+. ++                           ...+|++|++++|...             
T Consensus       151 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  230 (606)
T 3vq2_A          151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAG  230 (606)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTT
T ss_pred             hcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccc
Confidence            999999999998865433221 11                           1125566666655332             


Q ss_pred             -------------------------------------------------------------------hhhhhhccCCCCC
Q 036772          128 -------------------------------------------------------------------IEIHSSIQHLNKL  140 (583)
Q Consensus       128 -------------------------------------------------------------------~~~~~~i~~l~~L  140 (583)
                                                                                         ..+| .+..+++|
T Consensus       231 L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L  309 (606)
T 3vq2_A          231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE-DVPKHFKW  309 (606)
T ss_dssp             CEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC-CCCTTCCC
T ss_pred             cccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhh-hccccccC
Confidence                                                                               1122 45566788


Q ss_pred             CEEEccCCCCCCcCCCcCCCCCccEEEecCCCCccccc-ccCCCcCEEeccCCCCccc---cccccCCCCccEEeeeCCC
Q 036772          141 VFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFL-EISCNIENLDLSETAIEEL---PSSIGNLSRLVRLDLTNCS  216 (583)
Q Consensus       141 ~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~-~~~~~L~~L~L~~~~i~~l---p~~i~~l~~L~~L~L~~~~  216 (583)
                      +.|++++|.. +.+|.. .+++|++|++++|..+..++ ...++|+.|++++|.++.+   |..+..+++|++|++++|.
T Consensus       310 ~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  387 (606)
T 3vq2_A          310 QSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG  387 (606)
T ss_dssp             SEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS
T ss_pred             CEEEcccccC-cccccC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc
Confidence            8888988655 888854 88888888888875544332 2345666677776666654   4556666666666666654


Q ss_pred             CCccccccccCCCCCcEEEccCCCCCCccc-cccCCCCcccEEEccCCccccC----------ccEEEeccCCCcc--cC
Q 036772          217 RLKSVSNSLCNLKSLQYLFLSGCLKLEKLP-EEIGNLESLKIMLANETAISQN----------LVDMSLVDCGITE--LP  283 (583)
Q Consensus       217 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~~----------L~~L~L~~~~l~~--lp  283 (583)
                      . ..+|..+..+++|++|++++|...+..| ..+..+++|+.|++++|.+...          |+.|++++|.+.+  +|
T Consensus       388 l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  466 (606)
T 3vq2_A          388 A-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS  466 (606)
T ss_dssp             E-EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred             c-ccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH
Confidence            2 3345556666666666666655544444 4555666666666666554331          5666666666554  45


Q ss_pred             ccCCCCCCCCEEEccCCCCccc-ChhhhccCcccccccccc
Q 036772          284 ESLGRSPSLKFLNLAENDFEKI-PSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       284 ~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c  323 (583)
                      ..++.+++|+.|++++|.++.+ |..++.+++|+.|++++|
T Consensus       467 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN  507 (606)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             HhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence            5566666666666666665543 344556666666666665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=6.1e-28  Score=274.79  Aligned_cols=319  Identities=19%  Similarity=0.205  Sum_probs=255.9

Q ss_pred             ceEEEEEecCCCCCcceEEEecCCCCCCc------------cceecCCccc--ccCCCccEEEecCCC-CCCCCCCC-CC
Q 036772            4 AIEGISLDMFRMRRLRFFKFYNSFPEMNK------------CKVRHSRCLE--SFFNELRYFQWDGYP-LKSLPSKN-IP   67 (583)
Q Consensus         4 ~ve~i~ld~~~m~~Lr~L~l~~~~~~~~~------------~~~~l~~~l~--~l~~~Lr~L~l~~~~-l~~lp~~~-~~   67 (583)
                      .+.+|.-.+.+|++|+.|++++|.+....            ....+|..+.  .+ ++|++|++++|. ...+|..+ .+
T Consensus       436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L-~~L~~L~Ls~N~l~~~iP~~l~~L  514 (876)
T 4ecn_A          436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL-KDLTDVELYNCPNMTQLPDFLYDL  514 (876)
T ss_dssp             EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC-TTCCEEEEESCTTCCSCCGGGGGC
T ss_pred             cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC-CCCCEEECcCCCCCccChHHHhCC
Confidence            45666555679999999999999641100            0003888876  88 599999999998 56788766 89


Q ss_pred             CCceEEEccCCC-hhh--hcccccCC-------CCccEEeccCCCCCCCCCC---CCCCCCcCEEeeeCCCCchhhhhhc
Q 036772           68 EHLVSLEMPHSN-IEQ--LWNGVQNL-------AALKRLNLSYCKQLSRIPD---LSLALNLEWLDLVGCASLIEIHSSI  134 (583)
Q Consensus        68 ~~L~~L~L~~~~-l~~--l~~~~~~l-------~~L~~L~Ls~~~~l~~~p~---l~~l~~L~~L~L~~~~~l~~~~~~i  134 (583)
                      ++|++|++++|+ ++.  +|..+..+       ++|+.|+|++|... .+|.   ++.+++|++|+|++|... .+| .+
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~  591 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AF  591 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CC
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hh
Confidence            999999999998 774  77655544       59999999999877 7776   899999999999998765 788 89


Q ss_pred             cCCCCCCEEEccCCCCCCcCCCcC-CCCC-ccEEEecCCCCcccccccCC-----CcCEEeccCCCCccccc----ccc-
Q 036772          135 QHLNKLVFLNLGRCISLKSLPTGI-NLDS-LKVLYLGGCSNLKRFLEISC-----NIENLDLSETAIEELPS----SIG-  202 (583)
Q Consensus       135 ~~l~~L~~L~L~~c~~l~~lp~~~-~l~~-L~~L~L~~c~~l~~~~~~~~-----~L~~L~L~~~~i~~lp~----~i~-  202 (583)
                      +.+++|+.|+|++| .+..+|..+ .+++ |++|++++|. +..+|..+.     +|+.|++++|.+...++    .+. 
T Consensus       592 ~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~  669 (876)
T 4ecn_A          592 GTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD  669 (876)
T ss_dssp             CTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred             cCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence            99999999999995 466899878 7888 9999999976 447776543     38899999999875433    233 


Q ss_pred             -CCCCccEEeeeCCCCCccccccc-cCCCCCcEEEccCCCCCCccccccCC--------CCcccEEEccCCcccc-----
Q 036772          203 -NLSRLVRLDLTNCSRLKSVSNSL-CNLKSLQYLFLSGCLKLEKLPEEIGN--------LESLKIMLANETAISQ-----  267 (583)
Q Consensus       203 -~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~l~~c~~l~~lp~~l~~--------l~~L~~L~l~~~~i~~-----  267 (583)
                       .+++|+.|++++|... .+|..+ ..+++|+.|++++|... .+|..+..        +++|+.|++++|.+..     
T Consensus       670 ~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l  747 (876)
T 4ecn_A          670 YKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDF  747 (876)
T ss_dssp             CCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGG
T ss_pred             ccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHh
Confidence             4458999999998766 666655 48999999999998654 67765443        3499999999987653     


Q ss_pred             ------CccEEEeccCCCcccCccCCCCCCCCEEEccC------CCCc-ccChhhhccCcccccccccccccccCCC
Q 036772          268 ------NLVDMSLVDCGITELPESLGRSPSLKFLNLAE------NDFE-KIPSSIKQLSNLLFLTLQNCKRLQSLPE  331 (583)
Q Consensus       268 ------~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~------n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~  331 (583)
                            .|+.|+|++|.++++|..+..+++|+.|+|++      |.+. .+|..+..+++|+.|+|++|. +..+|.
T Consensus       748 ~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~  823 (876)
T 4ecn_A          748 RATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDE  823 (876)
T ss_dssp             STTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCS
T ss_pred             hhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCH
Confidence                  28899999999999999999999999999977      5554 889999999999999999995 488874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=8.2e-28  Score=261.80  Aligned_cols=298  Identities=16%  Similarity=0.199  Sum_probs=195.0

Q ss_pred             CCcceEEEecCCCCCCccceec-CCcccccCCCccEEEecCCCCCCC-CCCC-CCCCceEEEccCCChhhhcccccCCCC
Q 036772           16 RRLRFFKFYNSFPEMNKCKVRH-SRCLESFFNELRYFQWDGYPLKSL-PSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAA   92 (583)
Q Consensus        16 ~~Lr~L~l~~~~~~~~~~~~~l-~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~   92 (583)
                      ++|+.|++++|.+      ..+ |..+..+ ++|++|++++|.++.+ |..+ .+++|++|++++|+++.+|..  .+++
T Consensus        21 ~~L~~L~Ls~n~i------~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~   91 (520)
T 2z7x_B           21 QKTTILNISQNYI------SELWTSDILSL-SKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVN   91 (520)
T ss_dssp             TTCSEEECCSSCC------CCCCHHHHTTC-TTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCC
T ss_pred             ccccEEECCCCcc------cccChhhcccc-ccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCC
Confidence            4677777766642      222 2455555 3677777777776666 3333 566777777777777766665  6677


Q ss_pred             ccEEeccCCCCCC-CCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCC--CEEEccCCCC--CCcCCCcC--------
Q 036772           93 LKRLNLSYCKQLS-RIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKL--VFLNLGRCIS--LKSLPTGI--------  158 (583)
Q Consensus        93 L~~L~Ls~~~~l~-~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L--~~L~L~~c~~--l~~lp~~~--------  158 (583)
                      |++|+|++|.... .+| .++.+++|++|++++|....   ..++.+++|  +.|++++|..  ....|..+        
T Consensus        92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l  168 (520)
T 2z7x_B           92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL  168 (520)
T ss_dssp             CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEE
T ss_pred             ccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceE
Confidence            7777777776554 244 46667777777777665433   234455555  6666666543  22222222        


Q ss_pred             -------------------CCCCccEEEecCCC------------------------------Ccc----cccc--cCCC
Q 036772          159 -------------------NLDSLKVLYLGGCS------------------------------NLK----RFLE--ISCN  183 (583)
Q Consensus       159 -------------------~l~~L~~L~L~~c~------------------------------~l~----~~~~--~~~~  183 (583)
                                         .+++|+.|++++|.                              ...    .++.  ...+
T Consensus       169 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~  248 (520)
T 2z7x_B          169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT  248 (520)
T ss_dssp             EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSS
T ss_pred             EEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCc
Confidence                               24555555555543                              000    0000  0236


Q ss_pred             cCEEeccCCCCc-cccccc-----cCCCCccEEeee--------------------------CCCCCccccccccCCCCC
Q 036772          184 IENLDLSETAIE-ELPSSI-----GNLSRLVRLDLT--------------------------NCSRLKSVSNSLCNLKSL  231 (583)
Q Consensus       184 L~~L~L~~~~i~-~lp~~i-----~~l~~L~~L~L~--------------------------~~~~l~~lp~~l~~l~~L  231 (583)
                      |+.|++++|.++ .+|..+     +.+++|+.++++                          +|..... + ....+++|
T Consensus       249 L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~-~~~~l~~L  326 (520)
T 2z7x_B          249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM-L-CPSKISPF  326 (520)
T ss_dssp             CSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCC-C-CCSSCCCC
T ss_pred             ccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccc-c-chhhCCcc
Confidence            777777777776 667666     555555555544                          4432211 1 12678999


Q ss_pred             cEEEccCCCCCCccccccCCCCcccEEEccCCcccc------------CccEEEeccCCCcc-cCcc-CCCCCCCCEEEc
Q 036772          232 QYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ------------NLVDMSLVDCGITE-LPES-LGRSPSLKFLNL  297 (583)
Q Consensus       232 ~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~------------~L~~L~L~~~~l~~-lp~~-l~~l~~L~~L~L  297 (583)
                      ++|++++|...+..|..++.+++|+.|++++|.+..            .|+.|++++|.+.+ +|.. +..+++|++|++
T Consensus       327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L  406 (520)
T 2z7x_B          327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM  406 (520)
T ss_dssp             CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred             cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence            999999998888889999999999999999998874            29999999999998 8864 788999999999


Q ss_pred             cCCCCc-ccChhhhccCcccccccccccccccCC
Q 036772          298 AENDFE-KIPSSIKQLSNLLFLTLQNCKRLQSLP  330 (583)
Q Consensus       298 s~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp  330 (583)
                      ++|.++ .+|..+.  ++|+.|++++| +++++|
T Consensus       407 s~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip  437 (520)
T 2z7x_B          407 SSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIP  437 (520)
T ss_dssp             CSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCC
T ss_pred             cCCCCCcchhhhhc--ccCCEEECCCC-cccccc
Confidence            999986 5555443  68999999998 566766

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=4.4e-28  Score=265.62  Aligned_cols=115  Identities=18%  Similarity=0.140  Sum_probs=57.6

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhh--cccccC
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQL--WNGVQN   89 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l--~~~~~~   89 (583)
                      ++++||+|++++|.     .....|..+..+ .+|++|++++|.++.+|+. + .+++|++|++++|.++.+  +..+.+
T Consensus        48 ~l~~L~~L~Ls~n~-----i~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  121 (549)
T 2z81_A           48 ACANLQVLILKSSR-----INTIEGDAFYSL-GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN  121 (549)
T ss_dssp             SCTTCCEEECTTSC-----CCEECTTTTTTC-TTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTT
T ss_pred             cCCcccEEECCCCC-----cCccChhhcccc-ccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhc
Confidence            55555555555553     122223444444 3555555555555555543 2 455555555555555532  344555


Q ss_pred             CCCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCchhhhhhc
Q 036772           90 LAALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGCASLIEIHSSI  134 (583)
Q Consensus        90 l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~~~~i  134 (583)
                      +++|++|++++|.....+|  .+..+++|++|++++|......|..+
T Consensus       122 l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  168 (549)
T 2z81_A          122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL  168 (549)
T ss_dssp             CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred             cCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence            5555555555555444433  35555555555555554443333333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=3.3e-27  Score=243.31  Aligned_cols=291  Identities=19%  Similarity=0.246  Sum_probs=186.9

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCc
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAAL   93 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L   93 (583)
                      .+++|+.|+++++.      ...++ ++..+ ++|++|++++|.++.+|....+++|++|++++|.++.++ .+..+++|
T Consensus        42 ~l~~L~~L~l~~~~------i~~~~-~~~~~-~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L  112 (347)
T 4fmz_A           42 ELESITKLVVAGEK------VASIQ-GIEYL-TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNL  112 (347)
T ss_dssp             HHTTCSEEECCSSC------CCCCT-TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTC
T ss_pred             hcccccEEEEeCCc------cccch-hhhhc-CCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcC
Confidence            66778888887763      23333 36666 478888888888877777447778888888888777764 47778888


Q ss_pred             cEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCC
Q 036772           94 KRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSN  173 (583)
Q Consensus        94 ~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~  173 (583)
                      ++|++++|.. ..++.+..+++|++|++++|.....++. +..+++|+.|++++| .+..++....+++|++|++++|..
T Consensus       113 ~~L~l~~n~i-~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~-~~~~~~~~~~l~~L~~L~l~~n~l  189 (347)
T 4fmz_A          113 RELYLNEDNI-SDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES-KVKDVTPIANLTDLYSLSLNYNQI  189 (347)
T ss_dssp             SEEECTTSCC-CCCGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECTTSCC
T ss_pred             CEEECcCCcc-cCchhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCC-CcCCchhhccCCCCCEEEccCCcc
Confidence            8888887754 3445577778888888888765555443 777888888888775 344444422677888888877642


Q ss_pred             ccccc--ccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCC
Q 036772          174 LKRFL--EISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGN  251 (583)
Q Consensus       174 l~~~~--~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~  251 (583)
                       ..++  ....+|+.|++++|.++.++. +..+++|+.|++++|.... ++. +..+++|++|++++|.... + +.+..
T Consensus       190 -~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~  263 (347)
T 4fmz_A          190 -EDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKD  263 (347)
T ss_dssp             -CCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTT
T ss_pred             -cccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhc
Confidence             2222  345677778888877777665 7777788888887776543 333 6777788888887765433 3 34667


Q ss_pred             CCcccEEEccCCccccC--------ccEEEeccCCCccc-CccCCCCCCCCEEEccCCCCcccChhhhccCccccccccc
Q 036772          252 LESLKIMLANETAISQN--------LVDMSLVDCGITEL-PESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQN  322 (583)
Q Consensus       252 l~~L~~L~l~~~~i~~~--------L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~  322 (583)
                      +++|+.|++++|.+...        |+.|++++|.+++. |..++.+++|+.|++++|.++.++. +..+++|+.|++++
T Consensus       264 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~  342 (347)
T 4fmz_A          264 LTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFAN  342 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSC
T ss_pred             CCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhh
Confidence            77777777777665432        45555555554442 2334445555555555555554443 44455555555554


Q ss_pred             c
Q 036772          323 C  323 (583)
Q Consensus       323 c  323 (583)
                      |
T Consensus       343 N  343 (347)
T 4fmz_A          343 Q  343 (347)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=1.2e-27  Score=255.94  Aligned_cols=311  Identities=17%  Similarity=0.189  Sum_probs=172.6

Q ss_pred             CCcccccCCCccEEEecCCCCC-CCCC-CC-CCCCceEEEccCCChhhh-cccccCCCCccEEeccCCCCCCCCC-C--C
Q 036772           38 SRCLESFFNELRYFQWDGYPLK-SLPS-KN-IPEHLVSLEMPHSNIEQL-WNGVQNLAALKRLNLSYCKQLSRIP-D--L  110 (583)
Q Consensus        38 ~~~l~~l~~~Lr~L~l~~~~l~-~lp~-~~-~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p-~--l  110 (583)
                      |..+..+ ++|++|++++|.+. .++. .+ .+++|++|++++|.+..+ +..+.++++|++|+|++|......+ .  +
T Consensus        47 ~~~~~~l-~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  125 (455)
T 3v47_A           47 ETSFSRL-QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF  125 (455)
T ss_dssp             TTTTSSC-TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTT
T ss_pred             hhHhccC-ccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccc
Confidence            3444444 24555555555443 2322 22 445555555555555443 3344555555555555554332222 1  4


Q ss_pred             CCCCCcCEEeeeCCCCchhhhhh-ccCCCCCCEEEccCCCCCCcCCCcC---CCCCccEEEecCCCCccccc--------
Q 036772          111 SLALNLEWLDLVGCASLIEIHSS-IQHLNKLVFLNLGRCISLKSLPTGI---NLDSLKVLYLGGCSNLKRFL--------  178 (583)
Q Consensus       111 ~~l~~L~~L~L~~~~~l~~~~~~-i~~l~~L~~L~L~~c~~l~~lp~~~---~l~~L~~L~L~~c~~l~~~~--------  178 (583)
                      ..+++|++|++++|......|.. ++.+++|++|++++|......|..+   ...+|+.|++++|......+        
T Consensus       126 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~  205 (455)
T 3v47_A          126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC  205 (455)
T ss_dssp             TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHH
T ss_pred             cCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccc
Confidence            44555555555554433333332 4445555555555433222222222   12445555555433211100        


Q ss_pred             ---ccCCCcCEEeccCCCCcc-cccccc---CCCCccEEeeeCCCCCccc----------ccccc--CCCCCcEEEccCC
Q 036772          179 ---EISCNIENLDLSETAIEE-LPSSIG---NLSRLVRLDLTNCSRLKSV----------SNSLC--NLKSLQYLFLSGC  239 (583)
Q Consensus       179 ---~~~~~L~~L~L~~~~i~~-lp~~i~---~l~~L~~L~L~~~~~l~~l----------p~~l~--~l~~L~~L~l~~c  239 (583)
                         ....+|+.|++++|.++. .|..+.   ..++|+.|++++|......          +..+.  ..++|++|++++|
T Consensus       206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n  285 (455)
T 3v47_A          206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS  285 (455)
T ss_dssp             CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred             ccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc
Confidence               011345556666655542 222221   1245555555554322210          00111  2357888888888


Q ss_pred             CCCCccccccCCCCcccEEEccCCccccC----------ccEEEeccCCCccc-CccCCCCCCCCEEEccCCCCccc-Ch
Q 036772          240 LKLEKLPEEIGNLESLKIMLANETAISQN----------LVDMSLVDCGITEL-PESLGRSPSLKFLNLAENDFEKI-PS  307 (583)
Q Consensus       240 ~~l~~lp~~l~~l~~L~~L~l~~~~i~~~----------L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~l-p~  307 (583)
                      ...+..|..++.+++|+.|++++|.+...          |+.|++++|.++++ |..++.+++|++|+|++|.++.+ |.
T Consensus       286 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  365 (455)
T 3v47_A          286 KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ  365 (455)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT
T ss_pred             cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh
Confidence            77777788888888888888888876532          88888888888886 56788899999999999998866 66


Q ss_pred             hhhccCcccccccccccccccCCCCCCCCeeeeeCCcCcccccCccccccccccc
Q 036772          308 SIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSEL  362 (583)
Q Consensus       308 ~i~~l~~L~~L~L~~c~~L~~lp~lp~~~~l~~~~c~sL~~l~~l~~l~~~~~~~  362 (583)
                      .+..+++|+.|++++| +++.+|.            ..+..+++|+.+.+.+|++
T Consensus       366 ~~~~l~~L~~L~L~~N-~l~~~~~------------~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          366 SFLGLPNLKELALDTN-QLKSVPD------------GIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             TTTTCTTCCEEECCSS-CCSCCCT------------TTTTTCTTCCEEECCSSCB
T ss_pred             hccccccccEEECCCC-ccccCCH------------hHhccCCcccEEEccCCCc
Confidence            7888999999999987 5566552            2345666777777766654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=1.4e-27  Score=262.61  Aligned_cols=321  Identities=19%  Similarity=0.209  Sum_probs=219.6

Q ss_pred             CCcceEEEecCCCCCCccceecC-CcccccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChhhhcccccCCCC
Q 036772           16 RRLRFFKFYNSFPEMNKCKVRHS-RCLESFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQLWNGVQNLAA   92 (583)
Q Consensus        16 ~~Lr~L~l~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~   92 (583)
                      ++|+.|++++|.      ...++ ..+..+ ++|++|++++|.++.+++ .| .+++|++|++++|.++.+|..  .+++
T Consensus        52 ~~L~~L~Ls~N~------i~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~  122 (562)
T 3a79_B           52 PRTKALSLSQNS------ISELRMPDISFL-SELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMAS  122 (562)
T ss_dssp             TTCCEEECCSSC------CCCCCGGGTTTC-TTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTT
T ss_pred             CCcCEEECCCCC------ccccChhhhccC-CCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--cccc
Confidence            467777777764      22333 456666 367777777777776643 34 567777777777777777665  6777


Q ss_pred             ccEEeccCCCCCC-CCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCC--CEEEccCCCC--CCcCCCcC-C------
Q 036772           93 LKRLNLSYCKQLS-RIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKL--VFLNLGRCIS--LKSLPTGI-N------  159 (583)
Q Consensus        93 L~~L~Ls~~~~l~-~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L--~~L~L~~c~~--l~~lp~~~-~------  159 (583)
                      |++|+|++|+... ..| .++.+++|++|++++|.....   .+..+++|  +.|++++|..  ....|..+ .      
T Consensus       123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l  199 (562)
T 3a79_B          123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVL  199 (562)
T ss_dssp             CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEE
T ss_pred             CCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceE
Confidence            7777777776544 222 466777777777777654332   23333344  6666666433  12222211 1      


Q ss_pred             --------------------C-------------------------------------------------------CCcc
Q 036772          160 --------------------L-------------------------------------------------------DSLK  164 (583)
Q Consensus       160 --------------------l-------------------------------------------------------~~L~  164 (583)
                                          +                                                       ++|+
T Consensus       200 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~  279 (562)
T 3a79_B          200 HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE  279 (562)
T ss_dssp             EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEE
T ss_pred             EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhccccc
Confidence                                1                                                       1455


Q ss_pred             EEEecCCCCcccccccC----------------------------------CCcCEEeccCCCCccccccccCCCCccEE
Q 036772          165 VLYLGGCSNLKRFLEIS----------------------------------CNIENLDLSETAIEELPSSIGNLSRLVRL  210 (583)
Q Consensus       165 ~L~L~~c~~l~~~~~~~----------------------------------~~L~~L~L~~~~i~~lp~~i~~l~~L~~L  210 (583)
                      +|++++|.....+|...                                  .+++.|+++++.+..++. .+.+++|++|
T Consensus       280 ~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L  358 (562)
T 3a79_B          280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFL  358 (562)
T ss_dssp             EEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEE
T ss_pred             EEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEE
Confidence            55555543222333322                                  347777788777765442 2678899999


Q ss_pred             eeeCCCCCccccccccCCCCCcEEEccCCCCCC--ccccccCCCCcccEEEccCCcccc-----------CccEEEeccC
Q 036772          211 DLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLE--KLPEEIGNLESLKIMLANETAISQ-----------NLVDMSLVDC  277 (583)
Q Consensus       211 ~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~--~lp~~l~~l~~L~~L~l~~~~i~~-----------~L~~L~L~~~  277 (583)
                      ++++|......|..+.++++|++|++++|....  .+|..+..+++|+.|++++|.+..           .|+.|++++|
T Consensus       359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n  438 (562)
T 3a79_B          359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN  438 (562)
T ss_dssp             ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred             ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence            999998887788889999999999999976543  445678899999999999988765           2889999999


Q ss_pred             CCcc-cCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccccccccCCCCCCCCeeeeeCCcCcccccCccccc
Q 036772          278 GITE-LPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLF  356 (583)
Q Consensus       278 ~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~~l~~~~c~sL~~l~~l~~l~  356 (583)
                      .+++ +|..+.  ++|+.|++++|.++.+|..+..+++|+.|++++| +++.+|.            ..+..+++++.+.
T Consensus       439 ~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~------------~~~~~l~~L~~L~  503 (562)
T 3a79_B          439 MLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPD------------GVFDRLTSLQYIW  503 (562)
T ss_dssp             CCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS-CCCCCCT------------TSTTTCTTCCCEE
T ss_pred             CCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC-CCCCCCH------------HHHhcCCCCCEEE
Confidence            9866 455443  7999999999999999998889999999999998 5667663            1366677788888


Q ss_pred             ccccccce
Q 036772          357 TRSSELWQ  364 (583)
Q Consensus       357 ~~~~~~~~  364 (583)
                      +.+|++.+
T Consensus       504 l~~N~~~c  511 (562)
T 3a79_B          504 LHDNPWDC  511 (562)
T ss_dssp             CCSCCBCC
T ss_pred             ecCCCcCC
Confidence            88888753

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=1.3e-27  Score=255.66  Aligned_cols=306  Identities=17%  Similarity=0.161  Sum_probs=234.2

Q ss_pred             CCCCCcceEEEecCCCCCCccceec-CCcccccCCCccEEEecCCCCCCC-CCCC-CCCCceEEEccCCChhh-hccc--
Q 036772           13 FRMRRLRFFKFYNSFPEMNKCKVRH-SRCLESFFNELRYFQWDGYPLKSL-PSKN-IPEHLVSLEMPHSNIEQ-LWNG--   86 (583)
Q Consensus        13 ~~m~~Lr~L~l~~~~~~~~~~~~~l-~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~l~~-l~~~--   86 (583)
                      .++++|+.|++++|.     ....+ +..+..+ ++|++|++++|.+..+ |..+ .+++|++|++++|.++. ++..  
T Consensus        51 ~~l~~L~~L~L~~n~-----~~~~i~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  124 (455)
T 3v47_A           51 SRLQDLQFLKVEQQT-----PGLVIRNNTFRGL-SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF  124 (455)
T ss_dssp             SSCTTCCEEECCCCS-----TTCEECTTTTTTC-TTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSST
T ss_pred             ccCccccEEECcCCc-----ccceECccccccc-ccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCccc
Confidence            389999999999885     23344 4567777 5999999999999887 5555 79999999999999985 4444  


Q ss_pred             ccCCCCccEEeccCCCCCCCCCC--CCCCCCcCEEeeeCCCCchhhhhhccCC--CCCCEEEccCCCCCCcCCCc-----
Q 036772           87 VQNLAALKRLNLSYCKQLSRIPD--LSLALNLEWLDLVGCASLIEIHSSIQHL--NKLVFLNLGRCISLKSLPTG-----  157 (583)
Q Consensus        87 ~~~l~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~~~~l~~~~~~i~~l--~~L~~L~L~~c~~l~~lp~~-----  157 (583)
                      +..+++|++|+|++|......|.  +..+++|++|++++|......+..+..+  .+|+.|++++| .+..++..     
T Consensus       125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n-~l~~~~~~~~~~~  203 (455)
T 3v47_A          125 FKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI-TLQDMNEYWLGWE  203 (455)
T ss_dssp             TTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC-BCTTCSTTCTTHH
T ss_pred             ccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccC-cccccchhhcccc
Confidence            89999999999999988777675  8899999999999998777667777665  78999999885 44444432     


Q ss_pred             -----CCCCCccEEEecCCCCcccccccC------CCcCEEeccCCCCccccc-----------ccc--CCCCccEEeee
Q 036772          158 -----INLDSLKVLYLGGCSNLKRFLEIS------CNIENLDLSETAIEELPS-----------SIG--NLSRLVRLDLT  213 (583)
Q Consensus       158 -----~~l~~L~~L~L~~c~~l~~~~~~~------~~L~~L~L~~~~i~~lp~-----------~i~--~l~~L~~L~L~  213 (583)
                           ..+++|++|++++|......|..+      .+++.|+++++.......           .+.  ..++|+.|+++
T Consensus       204 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  283 (455)
T 3v47_A          204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLS  283 (455)
T ss_dssp             HHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECC
T ss_pred             ccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEec
Confidence                 156789999999986554444322      567777777664332110           111  23577788888


Q ss_pred             CCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccC----------ccEEEeccCCCccc-
Q 036772          214 NCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQN----------LVDMSLVDCGITEL-  282 (583)
Q Consensus       214 ~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~----------L~~L~L~~~~l~~l-  282 (583)
                      +|......|..+..+++|++|++++|...+..|..+..+++|+.|++++|.+...          |+.|++++|.++++ 
T Consensus       284 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  363 (455)
T 3v47_A          284 KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG  363 (455)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC
T ss_pred             CccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC
Confidence            7777666777777778888888887776666666777778888888887766432          77888888888885 


Q ss_pred             CccCCCCCCCCEEEccCCCCcccChh-hhccCcccccccccccc
Q 036772          283 PESLGRSPSLKFLNLAENDFEKIPSS-IKQLSNLLFLTLQNCKR  325 (583)
Q Consensus       283 p~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~  325 (583)
                      |..+..+++|++|++++|.++.+|.. +..+++|+.|++++|+-
T Consensus       364 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          364 DQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             hhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence            67899999999999999999988865 58899999999999853

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=4.7e-27  Score=260.64  Aligned_cols=277  Identities=19%  Similarity=0.190  Sum_probs=143.7

Q ss_pred             eEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCC
Q 036772           71 VSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRC  148 (583)
Q Consensus        71 ~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c  148 (583)
                      ++|++++|.+..++.. +..+++|++|++++|... .+| .+..+++|++|++++|......+..++.+++|+.|++++|
T Consensus       257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  335 (606)
T 3t6q_A          257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN  335 (606)
T ss_dssp             EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSC
T ss_pred             eEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCC
Confidence            3333333333333322 455555555555555433 333 3555555556665555544444445555555666666554


Q ss_pred             CCCCcCCCc-C-CCCCccEEEecCCCCcccc-----cccCCCcCEEeccCCCCccc-cccccCCCCccEEeeeCCCCCcc
Q 036772          149 ISLKSLPTG-I-NLDSLKVLYLGGCSNLKRF-----LEISCNIENLDLSETAIEEL-PSSIGNLSRLVRLDLTNCSRLKS  220 (583)
Q Consensus       149 ~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~~-----~~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~  220 (583)
                      .....+|.. + .+++|++|++++|......     ...+.+|+.|++++|.+..+ |..++.+++|+.|++++|.....
T Consensus       336 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  415 (606)
T 3t6q_A          336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK  415 (606)
T ss_dssp             SSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC
T ss_pred             CcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc
Confidence            444344443 2 5556666666554432211     12234555666666655544 33455556666666665554443


Q ss_pred             ccc-cccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcccc-------------CccEEEeccCCCccc-Ccc
Q 036772          221 VSN-SLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ-------------NLVDMSLVDCGITEL-PES  285 (583)
Q Consensus       221 lp~-~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~-------------~L~~L~L~~~~l~~l-p~~  285 (583)
                      .+. .+..+++|++|++++|......|..+..+++|+.|++++|.+.+             .|+.|++++|.++++ |..
T Consensus       416 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  495 (606)
T 3t6q_A          416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA  495 (606)
T ss_dssp             TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT
T ss_pred             ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh
Confidence            332 25556666666666655555555555566666666666655432             155666666666553 355


Q ss_pred             CCCCCCCCEEEccCCCCcc-cChhhhccCcccccccccccccccCCCCCCCCeeeeeCCcCcccccCccccccccccc
Q 036772          286 LGRSPSLKFLNLAENDFEK-IPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSEL  362 (583)
Q Consensus       286 l~~l~~L~~L~Ls~n~l~~-lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~~l~~~~c~sL~~l~~l~~l~~~~~~~  362 (583)
                      ++.+++|++|+|++|.++. .|..+..+++| .|++++| +++.++            ...+..+++++.+.+.+|++
T Consensus       496 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~------------~~~~~~l~~L~~L~l~~N~~  559 (606)
T 3t6q_A          496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIIL------------PSLLPILSQQRTINLRQNPL  559 (606)
T ss_dssp             TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCC------------GGGHHHHHTSSEEECTTCCE
T ss_pred             hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccC------------HhhcccCCCCCEEeCCCCCc
Confidence            5566666666666666553 34455555556 5666555 222222            12345556666666665554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=6.5e-27  Score=257.28  Aligned_cols=299  Identities=16%  Similarity=0.196  Sum_probs=220.1

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChhhh-cccccCC
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQL-WNGVQNL   90 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l-~~~~~~l   90 (583)
                      .+...+.++++++.      ...+|.++   +++|++|++++|.++.+|+ .+ .+++|++|++++|.++.+ +..+..+
T Consensus        29 ~~~~~~~l~ls~~~------L~~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l   99 (562)
T 3a79_B           29 SNELESMVDYSNRN------LTHVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN   99 (562)
T ss_dssp             ----CCEEECTTSC------CCSCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred             ccCCCcEEEcCCCC------CccCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC
Confidence            34455889998874      34567654   4689999999999999884 34 789999999999999987 4568999


Q ss_pred             CCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCch-hhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCc--cEE
Q 036772           91 AALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLI-EIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSL--KVL  166 (583)
Q Consensus        91 ~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L--~~L  166 (583)
                      ++|++|+|++|... .+|.. .+++|++|++++|.... .+|..++++++|++|+++++ .+...  .+ .+++|  ++|
T Consensus       100 ~~L~~L~Ls~N~l~-~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~--~~~~l~~L~L~~L  174 (562)
T 3a79_B          100 QDLEYLDVSHNRLQ-NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQL--DLLPVAHLHLSCI  174 (562)
T ss_dssp             TTCCEEECTTSCCC-EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTT--TTGGGTTSCEEEE
T ss_pred             CCCCEEECCCCcCC-ccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccC--chhhhhhceeeEE
Confidence            99999999999754 66655 88999999999987654 34578999999999999985 34432  23 45555  999


Q ss_pred             EecCCCC--ccccccc----------------------------------------------------------------
Q 036772          167 YLGGCSN--LKRFLEI----------------------------------------------------------------  180 (583)
Q Consensus       167 ~L~~c~~--l~~~~~~----------------------------------------------------------------  180 (583)
                      ++++|..  ....|..                                                                
T Consensus       175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L  254 (562)
T 3a79_B          175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV  254 (562)
T ss_dssp             EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEE
T ss_pred             EeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEE
Confidence            9988754  1111100                                                                


Q ss_pred             --------------------CCCcCEEeccCCCCc-cccccc-----cCCC--------------------------Ccc
Q 036772          181 --------------------SCNIENLDLSETAIE-ELPSSI-----GNLS--------------------------RLV  208 (583)
Q Consensus       181 --------------------~~~L~~L~L~~~~i~-~lp~~i-----~~l~--------------------------~L~  208 (583)
                                          ..+|++|++++|.++ .+|..+     ..++                          +|+
T Consensus       255 ~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~  334 (562)
T 3a79_B          255 TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK  334 (562)
T ss_dssp             EEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCS
T ss_pred             EecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcce
Confidence                                015666777777666 666654     3333                          366


Q ss_pred             EEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcccc------------CccEEEecc
Q 036772          209 RLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ------------NLVDMSLVD  276 (583)
Q Consensus       209 ~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~------------~L~~L~L~~  276 (583)
                      .|++++|......  ....+++|++|++++|...+..|..+..+++|+.|++++|.+..            .|+.|++++
T Consensus       335 ~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~  412 (562)
T 3a79_B          335 MLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL  412 (562)
T ss_dssp             EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred             EEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence            6666666542211  12678899999999998888888889999999999999988764            288999999


Q ss_pred             CCCcc-cCc-cCCCCCCCCEEEccCCCCc-ccChhhhccCcccccccccccccccCCC
Q 036772          277 CGITE-LPE-SLGRSPSLKFLNLAENDFE-KIPSSIKQLSNLLFLTLQNCKRLQSLPE  331 (583)
Q Consensus       277 ~~l~~-lp~-~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~  331 (583)
                      |.+++ +|. .+..+++|++|++++|.++ .+|..+.  ++|+.|++++| +++++|.
T Consensus       413 N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~  467 (562)
T 3a79_B          413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPK  467 (562)
T ss_dssp             SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCT
T ss_pred             CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccCh
Confidence            99988 775 4788899999999999986 4444332  68999999998 6777763

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.95  E-value=5.9e-27  Score=245.61  Aligned_cols=305  Identities=19%  Similarity=0.147  Sum_probs=244.1

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCc-ccccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChhhhccc-ccC
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRC-LESFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQLWNG-VQN   89 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~-l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l~~~-~~~   89 (583)
                      .+.+||.|+++++      ....+|.. +..+ ++|++|+++++.++.++. .+ .+++|++|++++|.++.++.. +..
T Consensus        43 ~l~~l~~l~l~~~------~l~~l~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  115 (390)
T 3o6n_A           43 TLNNQKIVTFKNS------TMRKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN  115 (390)
T ss_dssp             GGCCCSEEEEESC------EESEECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccCCceEEEecCC------chhhCChhHhccc-ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcC
Confidence            6789999999987      45667776 4566 589999999999998876 34 789999999999999988654 899


Q ss_pred             CCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEe
Q 036772           90 LAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYL  168 (583)
Q Consensus        90 l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L  168 (583)
                      +++|++|+|++|......+. +..+++|++|++++|......+..++.+++|+.|++++| .++.++. ..+++|+.|++
T Consensus       116 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~l~~L~~L~l  193 (390)
T 3o6n_A          116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDL-SLIPSLFHANV  193 (390)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCCG-GGCTTCSEEEC
T ss_pred             CCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCcccc-ccccccceeec
Confidence            99999999999965543334 688999999999998776666677999999999999984 5555542 26899999999


Q ss_pred             cCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccc
Q 036772          169 GGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEE  248 (583)
Q Consensus       169 ~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~  248 (583)
                      ++|. +..+ ....+|+.|++++|.++.+|..  ..++|+.|++++|.....  ..+..+++|++|++++|...+..|..
T Consensus       194 ~~n~-l~~~-~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~  267 (390)
T 3o6n_A          194 SYNL-LSTL-AIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP  267 (390)
T ss_dssp             CSSC-CSEE-ECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             cccc-cccc-CCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence            9864 3333 2345899999999999988764  358999999999876543  57888999999999999877777888


Q ss_pred             cCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCccccccccccccccc
Q 036772          249 IGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQS  328 (583)
Q Consensus       249 l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~  328 (583)
                      +..+++|+.|++++|.+.              ++|..+..+++|++|++++|.++.+|..+..+++|+.|++++|+ ++.
T Consensus       268 ~~~l~~L~~L~L~~n~l~--------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~  332 (390)
T 3o6n_A          268 FVKMQRLERLYISNNRLV--------------ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVT  332 (390)
T ss_dssp             GTTCSSCCEEECCSSCCC--------------EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCC
T ss_pred             ccccccCCEEECCCCcCc--------------ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc-cce
Confidence            888888887777766644              46777788899999999999999999889999999999999984 444


Q ss_pred             CCCCCCCCeeeeeCCcCcccccCcccccccccccc
Q 036772          329 LPELPCGSNIFARYCTSLETLSNLSTLFTRSSELW  363 (583)
Q Consensus       329 lp~lp~~~~l~~~~c~sL~~l~~l~~l~~~~~~~~  363 (583)
                      ++               +..+++|+.+.+.+|++.
T Consensus       333 ~~---------------~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          333 LK---------------LSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             CC---------------CCTTCCCSEEECCSSCEE
T ss_pred             eC---------------chhhccCCEEEcCCCCcc
Confidence            32               344566677777777763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=2.9e-27  Score=260.13  Aligned_cols=121  Identities=27%  Similarity=0.317  Sum_probs=72.9

Q ss_pred             cCCCCccEEeeeCCCCCccc--cccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcccc-----------C
Q 036772          202 GNLSRLVRLDLTNCSRLKSV--SNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ-----------N  268 (583)
Q Consensus       202 ~~l~~L~~L~L~~~~~l~~l--p~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~-----------~  268 (583)
                      ..+++|+.|++++|......  +..+..+++|++|++++|... .+|..+..+++|+.|++++|.+..           .
T Consensus       344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  422 (570)
T 2z63_A          344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN  422 (570)
T ss_dssp             CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred             ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence            34556666666665543322  455666677777777766433 333336666667777666655432           1


Q ss_pred             ccEEEeccCCCcc-cCccCCCCCCCCEEEccCCCCc--ccChhhhccCcccccccccc
Q 036772          269 LVDMSLVDCGITE-LPESLGRSPSLKFLNLAENDFE--KIPSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       269 L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~L~~L~L~~c  323 (583)
                      |+.|++++|.+.+ .|..+..+++|++|++++|.++  .+|..+..+++|+.|++++|
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n  480 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  480 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence            6666666666665 4455666666666666666665  46666666666666666666

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=2.2e-26  Score=237.18  Aligned_cols=294  Identities=20%  Similarity=0.222  Sum_probs=241.3

Q ss_pred             ccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEe
Q 036772           41 LESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLD  120 (583)
Q Consensus        41 l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~  120 (583)
                      +..+ ++|+.|+++++.+..+|....+++|++|++++|.++.++. +..+++|++|++++|. +..++.+..+++|++|+
T Consensus        40 ~~~l-~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~  116 (347)
T 4fmz_A           40 QEEL-ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDISALQNLTNLRELY  116 (347)
T ss_dssp             HHHH-TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEE
T ss_pred             chhc-ccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEE
Confidence            3455 5899999999999999875589999999999999999877 9999999999999995 55678899999999999


Q ss_pred             eeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccc-cccCCCcCEEeccCCCCccccc
Q 036772          121 LVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRF-LEISCNIENLDLSETAIEELPS  199 (583)
Q Consensus       121 L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~-~~~~~~L~~L~L~~~~i~~lp~  199 (583)
                      +++|... .++. +..+++|+.|++++|..+..++....+++|++|++++|...... .....+|+.|++++|.++.++.
T Consensus       117 l~~n~i~-~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  194 (347)
T 4fmz_A          117 LNEDNIS-DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP  194 (347)
T ss_dssp             CTTSCCC-CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG
T ss_pred             CcCCccc-Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc
Confidence            9998754 4444 88999999999999888887776448999999999998643322 3456799999999999999887


Q ss_pred             cccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccC--------ccE
Q 036772          200 SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQN--------LVD  271 (583)
Q Consensus       200 ~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~--------L~~  271 (583)
                       +..+++|+.|++++|......+  +..+++|++|++++|.... ++. +..+++|+.|++++|.+...        |+.
T Consensus       195 -~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~  269 (347)
T 4fmz_A          195 -LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKM  269 (347)
T ss_dssp             -GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred             -ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCChhHhcCCCcCE
Confidence             8899999999999987655433  8889999999999986544 444 88999999999999887653        899


Q ss_pred             EEeccCCCcccCccCCCCCCCCEEEccCCCCccc-ChhhhccCcccccccccccccccCCCCCCCCeeeeeCCcCccccc
Q 036772          272 MSLVDCGITELPESLGRSPSLKFLNLAENDFEKI-PSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLS  350 (583)
Q Consensus       272 L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~~l~~~~c~sL~~l~  350 (583)
                      |++++|.+++++ .+..+++|+.|++++|.++.. |..++.+++|+.|++++|+ ++.++              .+..++
T Consensus       270 L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~--------------~~~~l~  333 (347)
T 4fmz_A          270 LNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIR--------------PLASLS  333 (347)
T ss_dssp             EECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCG--------------GGGGCT
T ss_pred             EEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-ccccc--------------Chhhhh
Confidence            999999998874 578889999999999998844 5668889999999999984 44433              144555


Q ss_pred             Cccccccccc
Q 036772          351 NLSTLFTRSS  360 (583)
Q Consensus       351 ~l~~l~~~~~  360 (583)
                      +|+.+.+.+|
T Consensus       334 ~L~~L~l~~N  343 (347)
T 4fmz_A          334 KMDSADFANQ  343 (347)
T ss_dssp             TCSEESSSCC
T ss_pred             ccceeehhhh
Confidence            5666655444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=2.3e-26  Score=247.05  Aligned_cols=293  Identities=20%  Similarity=0.269  Sum_probs=210.5

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCc
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAAL   93 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L   93 (583)
                      .+++|+.|++.++.      ...+| ++..+ ++|++|++++|.++.+|....+++|++|++++|.+..++. +.++++|
T Consensus        44 ~l~~l~~L~l~~~~------i~~l~-~~~~l-~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L  114 (466)
T 1o6v_A           44 DLDQVTTLQADRLG------IKSID-GVEYL-NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNL  114 (466)
T ss_dssp             HHHTCCEEECCSSC------CCCCT-TGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred             HhccccEEecCCCC------CccCc-chhhh-cCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCC
Confidence            46788888888763      23444 46666 5899999999988888874478889999999998888776 8888999


Q ss_pred             cEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCC
Q 036772           94 KRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSN  173 (583)
Q Consensus        94 ~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~  173 (583)
                      ++|++++|. +..++.+..+++|++|++++|... .++ .++.+++|+.|++.+  .+..++....+++|++|++++|. 
T Consensus       115 ~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~-~~~-~~~~l~~L~~L~l~~--~~~~~~~~~~l~~L~~L~l~~n~-  188 (466)
T 1o6v_A          115 TGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLSFGN--QVTDLKPLANLTTLERLDISSNK-  188 (466)
T ss_dssp             CEEECCSSC-CCCCGGGTTCTTCSEEEEEEEEEC-CCG-GGTTCTTCSEEEEEE--SCCCCGGGTTCTTCCEEECCSSC-
T ss_pred             CEEECCCCC-CCCChHHcCCCCCCEEECCCCccC-CCh-hhccCCcccEeecCC--cccCchhhccCCCCCEEECcCCc-
Confidence            999998885 444555888889999999887533 333 477788888888853  33344432277888888888765 


Q ss_pred             ccccc--ccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCC
Q 036772          174 LKRFL--EISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGN  251 (583)
Q Consensus       174 l~~~~--~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~  251 (583)
                      +..++  ..+.+|+.|++++|.++.+++ ++.+++|+.|++++|.... + ..+..+++|++|++++|......+  +..
T Consensus       189 l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~  263 (466)
T 1o6v_A          189 VSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSG  263 (466)
T ss_dssp             CCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             CCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhc
Confidence            33222  344678888888888777665 6777888888888776433 3 346677788888888776544333  677


Q ss_pred             CCcccEEEccCCccccC--------ccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772          252 LESLKIMLANETAISQN--------LVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       252 l~~L~~L~l~~~~i~~~--------L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c  323 (583)
                      +++|+.|++++|.+...        |+.|++++|.+.+++. ++.+++|+.|++++|.++.++. +..+++|+.|++++|
T Consensus       264 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          264 LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS
T ss_pred             CCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC
Confidence            77888888888766542        7788888888777655 6777888888888888776664 677788888888877


Q ss_pred             cccccC
Q 036772          324 KRLQSL  329 (583)
Q Consensus       324 ~~L~~l  329 (583)
                       .+..+
T Consensus       342 -~l~~~  346 (466)
T 1o6v_A          342 -KVSDV  346 (466)
T ss_dssp             -CCCCC
T ss_pred             -ccCCc
Confidence             34433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=2.9e-26  Score=246.17  Aligned_cols=289  Identities=19%  Similarity=0.255  Sum_probs=141.8

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCc
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAAL   93 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L   93 (583)
                      .+++|+.|++++|.+      ..++. +..+ ++|++|++++|.+..++....+++|++|++++|.++.++. +..+++|
T Consensus        66 ~l~~L~~L~Ls~n~l------~~~~~-~~~l-~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L  136 (466)
T 1o6v_A           66 YLNNLTQINFSNNQL------TDITP-LKNL-TKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNL  136 (466)
T ss_dssp             GCTTCCEEECCSSCC------CCCGG-GTTC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred             hhcCCCEEECCCCcc------CCchh-hhcc-ccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCC
Confidence            455555555555431      22222 4444 3555555555555555542355555555555555555543 5555555


Q ss_pred             cEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCC
Q 036772           94 KRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSN  173 (583)
Q Consensus        94 ~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~  173 (583)
                      ++|++++|. +..++.+..+++|++|++.++  ...++ .++.+++|+.|++++| .+..++....+++|++|++++|..
T Consensus       137 ~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~--~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l  211 (466)
T 1o6v_A          137 NRLELSSNT-ISDISALSGLTSLQQLSFGNQ--VTDLK-PLANLTTLERLDISSN-KVSDISVLAKLTNLESLIATNNQI  211 (466)
T ss_dssp             SEEEEEEEE-ECCCGGGTTCTTCSEEEEEES--CCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCC
T ss_pred             CEEECCCCc-cCCChhhccCCcccEeecCCc--ccCch-hhccCCCCCEEECcCC-cCCCChhhccCCCCCEEEecCCcc
Confidence            555555553 223344555555555555431  11111 2555555555555553 233333222455555555555432


Q ss_pred             ccccc-ccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCC
Q 036772          174 LKRFL-EISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNL  252 (583)
Q Consensus       174 l~~~~-~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l  252 (583)
                      ....+ ..+.+|+.|++++|.++.++ .+..+++|+.|++++|......+  +..+++|++|++++|.... ++. +..+
T Consensus       212 ~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l  286 (466)
T 1o6v_A          212 SDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGL  286 (466)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTC
T ss_pred             cccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCC
Confidence            22111 22345555555555555543 24555555555555554433222  4555555555555543332 222 4555


Q ss_pred             CcccEEEccCCccccC--------ccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772          253 ESLKIMLANETAISQN--------LVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       253 ~~L~~L~l~~~~i~~~--------L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c  323 (583)
                      ++|+.|++++|.+...        |+.|++++|.+++++. +..+++|+.|++++|.++.++ .+..+++|+.|++++|
T Consensus       287 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n  363 (466)
T 1o6v_A          287 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHN  363 (466)
T ss_dssp             TTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS
T ss_pred             CccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCC
Confidence            5555555555554322        5555555555555433 445555555555555555543 3455555555555555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=3.2e-26  Score=263.39  Aligned_cols=108  Identities=18%  Similarity=0.234  Sum_probs=56.5

Q ss_pred             CCCCcceEEEecCCCCCCccceec-CCcccccCCCccEEEecCCCCCCC-CCCC-CCCCceEEEccCCChhh-hccc--c
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRH-SRCLESFFNELRYFQWDGYPLKSL-PSKN-IPEHLVSLEMPHSNIEQ-LWNG--V   87 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l-~~~l~~l~~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~l~~-l~~~--~   87 (583)
                      ++++||+|++++|.     ....+ |..+..+ ++|++|++++|.+..+ |..| .+++|++|+|++|.+.. ++..  +
T Consensus        46 ~l~~L~~LdLs~n~-----~~~~i~~~~f~~L-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  119 (844)
T 3j0a_A           46 FLEQLQLLELGSQY-----TPLTIDKEAFRNL-PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF  119 (844)
T ss_dssp             SCCSCSEEEECTTC-----CCCEECTTTTSSC-TTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred             ccccCeEEeCCCCC-----CccccCHHHhcCC-CCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence            55555555555543     22333 4445555 3566666666655554 3333 55556666666665553 2332  5


Q ss_pred             cCCCCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCc
Q 036772           88 QNLAALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGCASL  127 (583)
Q Consensus        88 ~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l  127 (583)
                      .++++|++|+|++|......+  .++.+++|++|+|++|...
T Consensus       120 ~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A          120 RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             SSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             cccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            556666666666655444332  2555666666666655443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=4e-26  Score=245.76  Aligned_cols=271  Identities=20%  Similarity=0.189  Sum_probs=197.2

Q ss_pred             eecCCcccccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChhhh-cccccCCCCccEEeccCCCCCCCCCC-C
Q 036772           35 VRHSRCLESFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQL-WNGVQNLAALKRLNLSYCKQLSRIPD-L  110 (583)
Q Consensus        35 ~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-l  110 (583)
                      ..+|.+   +|.++++|++++|.++.++. .| .+++|++|++++|.++.+ +..+.++++|++|+|++|......+. |
T Consensus        24 ~~ip~~---~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  100 (477)
T 2id5_A           24 VAVPEG---IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF  100 (477)
T ss_dssp             SSCCSC---CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSS
T ss_pred             CcCCCC---CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccc
Confidence            345543   45789999999999988864 34 788999999999999877 56689999999999999865544333 7


Q ss_pred             CCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCccccc----ccCCCcC
Q 036772          111 SLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFL----EISCNIE  185 (583)
Q Consensus       111 ~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~----~~~~~L~  185 (583)
                      ..+++|++|+|++|......+..+..+++|+.|++++|......+..+ .+++|++|++++|. +..++    ..+.+|+
T Consensus       101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~  179 (477)
T 2id5_A          101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLI  179 (477)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCC
T ss_pred             cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCc
Confidence            889999999999988777777788999999999998854333334455 78999999999874 33333    3457888


Q ss_pred             EEeccCCCCccccc-cccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCc
Q 036772          186 NLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETA  264 (583)
Q Consensus       186 ~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  264 (583)
                      .|++++|.+..++. .+..+++|+.|++++|.....+|.......+|++|++++|......+..+..+++|+.|++++|.
T Consensus       180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  259 (477)
T 2id5_A          180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP  259 (477)
T ss_dssp             EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred             EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence            89999988887765 57888899999999988888888777777789999999876544333567888888888887776


Q ss_pred             cccCccEEEeccCCCcccC-ccCCCCCCCCEEEccCCCCccc-ChhhhccCcccccccccc
Q 036772          265 ISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNLAENDFEKI-PSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       265 i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c  323 (583)
                      +..              ++ ..+..+++|+.|+|++|.++.+ |..+..+++|+.|++++|
T Consensus       260 l~~--------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  306 (477)
T 2id5_A          260 IST--------------IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN  306 (477)
T ss_dssp             CCE--------------ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred             CCc--------------cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence            543              22 2344455555555555555433 334445555555555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=6e-26  Score=261.17  Aligned_cols=307  Identities=17%  Similarity=0.149  Sum_probs=203.7

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCC-CCCC-CCCC-CCCCceEEEccCCChhhh-cccccC
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYP-LKSL-PSKN-IPEHLVSLEMPHSNIEQL-WNGVQN   89 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~-l~~l-p~~~-~~~~L~~L~L~~~~l~~l-~~~~~~   89 (583)
                      -.++|+.|++++|.     .....+..+..+ .+|++|++++|. ...+ |..| .+++|++|+|++|.+..+ |..+.+
T Consensus        22 lp~~l~~LdLs~N~-----i~~i~~~~~~~l-~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~   95 (844)
T 3j0a_A           22 VLNTTERLLLSFNY-----IRTVTASSFPFL-EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG   95 (844)
T ss_dssp             SCTTCCEEEEESCC-----CCEECSSSCSSC-CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred             CCCCcCEEECCCCc-----CCccChhHCccc-ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence            34789999999986     334457788888 599999999994 5566 4455 899999999999999977 677999


Q ss_pred             CCCccEEeccCCCCCCCCCC---CCCCCCcCEEeeeCCCCchhhh-hhccCCCCCCEEEccCCCCCCcCCCcC-CC--CC
Q 036772           90 LAALKRLNLSYCKQLSRIPD---LSLALNLEWLDLVGCASLIEIH-SSIQHLNKLVFLNLGRCISLKSLPTGI-NL--DS  162 (583)
Q Consensus        90 l~~L~~L~Ls~~~~l~~~p~---l~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l--~~  162 (583)
                      +++|++|+|++|......+.   +..+++|++|+|++|......+ ..++++++|++|++++|......+..+ .+  ++
T Consensus        96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~  175 (844)
T 3j0a_A           96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT  175 (844)
T ss_dssp             CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred             CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence            99999999999987765553   8899999999999987665443 578999999999999965444344444 33  66


Q ss_pred             ccEEEecCCCCcccccccCC---------CcCEEeccCCCCcc-cccc--------------------------------
Q 036772          163 LKVLYLGGCSNLKRFLEISC---------NIENLDLSETAIEE-LPSS--------------------------------  200 (583)
Q Consensus       163 L~~L~L~~c~~l~~~~~~~~---------~L~~L~L~~~~i~~-lp~~--------------------------------  200 (583)
                      |+.|++++|......+..+.         .|+.|++++|.+.. ++..                                
T Consensus       176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~  255 (844)
T 3j0a_A          176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP  255 (844)
T ss_dssp             SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred             cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence            77777766544333322211         25666666654431 1111                                


Q ss_pred             ----ccC--CCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccC------
Q 036772          201 ----IGN--LSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQN------  268 (583)
Q Consensus       201 ----i~~--l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~------  268 (583)
                          +..  .++|+.|++++|......+..+..+++|+.|++++|......|..+..+++|+.|++++|.+...      
T Consensus       256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  335 (844)
T 3j0a_A          256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY  335 (844)
T ss_dssp             GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred             ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc
Confidence                111  14566666666655555555566666666666666655555555666666666666666655332      


Q ss_pred             ----ccEEEeccCCCcccC-ccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccccccccCCC
Q 036772          269 ----LVDMSLVDCGITELP-ESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPE  331 (583)
Q Consensus       269 ----L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~  331 (583)
                          |+.|++++|.+..++ ..+..+++|+.|++++|.++.++.    +++|+.|++++| ++..+|.
T Consensus       336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N-~l~~l~~  398 (844)
T 3j0a_A          336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGN-KLVTLPK  398 (844)
T ss_dssp             SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESC-CCCCCCC
T ss_pred             CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC----CCCcchhccCCC-Ccccccc
Confidence                666666666666654 345666666666666666665543    555666666655 3344443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=1.9e-26  Score=252.69  Aligned_cols=298  Identities=18%  Similarity=0.231  Sum_probs=201.6

Q ss_pred             CCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChhhhccc-ccCCCC
Q 036772           16 RRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQLWNG-VQNLAA   92 (583)
Q Consensus        16 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~   92 (583)
                      ++|+.|++++|.     .....|..+..+ ++|++|++++|.++.+++ .+ .+++|++|++++|.+..++.. +.++++
T Consensus        26 ~~L~~L~Ls~n~-----l~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~   99 (549)
T 2z81_A           26 AAMKSLDLSFNK-----ITYIGHGDLRAC-ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS   99 (549)
T ss_dssp             TTCCEEECCSSC-----CCEECSSTTSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred             CCccEEECcCCc-----cCccChhhhhcC-CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence            589999999985     233446778888 599999999999998875 34 889999999999999988765 899999


Q ss_pred             ccEEeccCCCCCC-CCC-CCCCCCCcCEEeeeCCCCchhhh-hhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEe
Q 036772           93 LKRLNLSYCKQLS-RIP-DLSLALNLEWLDLVGCASLIEIH-SSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYL  168 (583)
Q Consensus        93 L~~L~Ls~~~~l~-~~p-~l~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L  168 (583)
                      |++|+|++|.... ..| .++.+++|++|++++|.....++ ..++.+++|++|++++|......|..+ .+++|++|++
T Consensus       100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  179 (549)
T 2z81_A          100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL  179 (549)
T ss_dssp             CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred             CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence            9999999997664 333 58999999999999998677776 578999999999999976555567666 6777777777


Q ss_pred             cCCCCccccc----ccCCCcCEEeccCCCCcccc--------------------------------ccccCC--------
Q 036772          169 GGCSNLKRFL----EISCNIENLDLSETAIEELP--------------------------------SSIGNL--------  204 (583)
Q Consensus       169 ~~c~~l~~~~----~~~~~L~~L~L~~~~i~~lp--------------------------------~~i~~l--------  204 (583)
                      +++.. ..++    ..+.+|+.|++++|.++.++                                ..+..+        
T Consensus       180 ~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l  258 (549)
T 2z81_A          180 HLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF  258 (549)
T ss_dssp             ECSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred             ccCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence            66532 2222    22455666666655554431                                001111        


Q ss_pred             ---------------------------------------------------CCccEEeeeCCCCCccccccc-cCCCCCc
Q 036772          205 ---------------------------------------------------SRLVRLDLTNCSRLKSVSNSL-CNLKSLQ  232 (583)
Q Consensus       205 ---------------------------------------------------~~L~~L~L~~~~~l~~lp~~l-~~l~~L~  232 (583)
                                                                         ++|+.|++++|.. ..+|..+ ..+++|+
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l-~~ip~~~~~~l~~L~  337 (549)
T 2z81_A          259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLE  337 (549)
T ss_dssp             ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCC-CCCCHHHHHHCTTCC
T ss_pred             ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCcc-ccCCHHHHhcCcccc
Confidence                                                               2333344443322 2344333 3466667


Q ss_pred             EEEccCCCCCCcccc---ccCCCCcccEEEccCCcccc------------CccEEEeccCCCcccCccCCCCCCCCEEEc
Q 036772          233 YLFLSGCLKLEKLPE---EIGNLESLKIMLANETAISQ------------NLVDMSLVDCGITELPESLGRSPSLKFLNL  297 (583)
Q Consensus       233 ~L~l~~c~~l~~lp~---~l~~l~~L~~L~l~~~~i~~------------~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L  297 (583)
                      +|++++|...+.+|.   .++.+++|+.|++++|.+..            .|+.|++++|.++.+|..+..+++|++|++
T Consensus       338 ~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~L  417 (549)
T 2z81_A          338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL  417 (549)
T ss_dssp             EEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEEC
T ss_pred             EEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEEC
Confidence            777766665554432   25566667777777666532            266677777776666666666677777777


Q ss_pred             cCCCCcccChhhhccCcccccccccc
Q 036772          298 AENDFEKIPSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       298 s~n~l~~lp~~i~~l~~L~~L~L~~c  323 (583)
                      ++|.++.+|..+.  ++|+.|++++|
T Consensus       418 s~N~l~~l~~~~~--~~L~~L~Ls~N  441 (549)
T 2z81_A          418 SSTGIRVVKTCIP--QTLEVLDVSNN  441 (549)
T ss_dssp             TTSCCSCCCTTSC--TTCSEEECCSS
T ss_pred             CCCCcccccchhc--CCceEEECCCC
Confidence            7776666654432  35555555555

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=6.8e-26  Score=243.97  Aligned_cols=267  Identities=20%  Similarity=0.206  Sum_probs=213.5

Q ss_pred             CccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCC
Q 036772           47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGC  124 (583)
Q Consensus        47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~  124 (583)
                      .-+.++.++..++.+|..+ ++++++|++++|+++.++ ..+.++++|++|+|++|......| .|..+++|++|+|++|
T Consensus        12 ~~~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n   90 (477)
T 2id5_A           12 QDRAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN   90 (477)
T ss_dssp             TTTEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence            3467888888999999765 568999999999999885 569999999999999997666555 5899999999999998


Q ss_pred             CCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCccccc---ccCCCcCEEeccCCCCccccc-
Q 036772          125 ASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFL---EISCNIENLDLSETAIEELPS-  199 (583)
Q Consensus       125 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~---~~~~~L~~L~L~~~~i~~lp~-  199 (583)
                      ......+..++.+++|+.|+|++|......|..+ .+++|++|++++|......+   ..+.+|+.|++++|.++.+|. 
T Consensus        91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  170 (477)
T 2id5_A           91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE  170 (477)
T ss_dssp             CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred             cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence            6543333467899999999999965444445556 89999999999975433222   344689999999999998875 


Q ss_pred             cccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCC
Q 036772          200 SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGI  279 (583)
Q Consensus       200 ~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l  279 (583)
                      .+..+++|+.|++++|......+..+..+++|++|++++|..++.+|.......+              |+.|++++|.+
T Consensus       171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--------------L~~L~l~~n~l  236 (477)
T 2id5_A          171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN--------------LTSLSITHCNL  236 (477)
T ss_dssp             HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCC--------------CSEEEEESSCC
T ss_pred             HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcc--------------ccEEECcCCcc
Confidence            4888999999999998877666778888999999999998888887776555444              45556666666


Q ss_pred             cccC-ccCCCCCCCCEEEccCCCCcccCh-hhhccCcccccccccccccccC
Q 036772          280 TELP-ESLGRSPSLKFLNLAENDFEKIPS-SIKQLSNLLFLTLQNCKRLQSL  329 (583)
Q Consensus       280 ~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~l  329 (583)
                      +++| ..+..+++|+.|+|++|.++.++. .+..+++|+.|++++|. +..+
T Consensus       237 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~  287 (477)
T 2id5_A          237 TAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVV  287 (477)
T ss_dssp             CSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEE
T ss_pred             cccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceE
Confidence            6687 568899999999999999997764 57899999999999983 4443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=3e-26  Score=253.67  Aligned_cols=282  Identities=18%  Similarity=0.148  Sum_probs=223.4

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCc-ccccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChhhhccc-ccC
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRC-LESFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQLWNG-VQN   89 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~-l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l~~~-~~~   89 (583)
                      .+.+++.|+++++      ....+|.. +..+ ++|++|++++|.+..+|+ .+ .+++|++|++++|.+..++.. +..
T Consensus        49 ~l~~l~~l~l~~~------~l~~lp~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  121 (597)
T 3oja_B           49 TLNNQKIVTFKNS------TMRKLPAALLDSF-RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN  121 (597)
T ss_dssp             GGCCCSEEEESSC------EESEECTHHHHHC-CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cCCCceEEEeeCC------CCCCcCHHHHccC-CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence            5688999999887      45667765 4556 589999999999998876 44 789999999999999988765 689


Q ss_pred             CCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEe
Q 036772           90 LAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYL  168 (583)
Q Consensus        90 l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L  168 (583)
                      +++|++|+|++|......+. |+.+++|++|+|++|......|..++.+++|+.|++++| .++.++. ..+++|+.|++
T Consensus       122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~l~~L~~L~l  199 (597)
T 3oja_B          122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDL-SLIPSLFHANV  199 (597)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCCG-GGCTTCSEEEC
T ss_pred             CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcCh-hhhhhhhhhhc
Confidence            99999999999976544444 689999999999998876666778999999999999985 5665542 26889999999


Q ss_pred             cCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccc
Q 036772          169 GGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEE  248 (583)
Q Consensus       169 ~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~  248 (583)
                      ++|. +..+ ....+|+.|++++|.+..+|..+  .++|+.|++++|....  +..+..+++|+.|++++|...+..|..
T Consensus       200 ~~n~-l~~l-~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~  273 (597)
T 3oja_B          200 SYNL-LSTL-AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP  273 (597)
T ss_dssp             CSSC-CSEE-ECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred             ccCc-cccc-cCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence            9863 3333 24468999999999999887654  3789999999987654  467888999999999999887788888


Q ss_pred             cCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCccccccccccc
Q 036772          249 IGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCK  324 (583)
Q Consensus       249 l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~  324 (583)
                      ++.+++|+.|++++|.+.              .+|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|.
T Consensus       274 ~~~l~~L~~L~Ls~N~l~--------------~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          274 FVKMQRLERLYISNNRLV--------------ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             GTTCSSCCEEECTTSCCC--------------EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC
T ss_pred             hcCccCCCEEECCCCCCC--------------CCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC
Confidence            999988888777776654              35666666777777777777777777777777777777777763

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=2.4e-25  Score=250.29  Aligned_cols=341  Identities=19%  Similarity=0.146  Sum_probs=211.2

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhc-ccccCC
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLW-NGVQNL   90 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~-~~~~~l   90 (583)
                      ++++|+.|++++|.     .....|..+..+ ++|++|++++|.++.+|.. | .+++|++|++++|.+..++ ..+.++
T Consensus        47 ~l~~L~~L~Ls~n~-----l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  120 (680)
T 1ziw_A           47 RYSQLTSLDVGFNT-----ISKLEPELCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ  120 (680)
T ss_dssp             GGTTCSEEECCSSC-----CCCCCTTHHHHC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC
T ss_pred             CCCcCcEEECCCCc-----cCccCHHHHhcc-cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHcccc
Confidence            56677777776664     222334556666 4777777777777777763 4 6777777777777777665 347777


Q ss_pred             CCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhcc--CCCCCCEEEccCCCCCCcCC-CcC-CC-----
Q 036772           91 AALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQ--HLNKLVFLNLGRCISLKSLP-TGI-NL-----  160 (583)
Q Consensus        91 ~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~--~l~~L~~L~L~~c~~l~~lp-~~~-~l-----  160 (583)
                      ++|++|+|++|......+ .+..+++|++|++++|......+..++  .+++|+.|++++|. ++.++ ..+ .+     
T Consensus       121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~  199 (680)
T 1ziw_A          121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFG  199 (680)
T ss_dssp             TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CCCBCTTGGGGSSEECE
T ss_pred             CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc-ccccChhhhhhhhhhhh
Confidence            777777777776655544 366777777777777655444444332  45677777777653 33332 211 12     


Q ss_pred             ----------------------CCccEEEecCCCCcccccccC-----CCcCEEeccCCCCcccc-ccccCCCCccEEee
Q 036772          161 ----------------------DSLKVLYLGGCSNLKRFLEIS-----CNIENLDLSETAIEELP-SSIGNLSRLVRLDL  212 (583)
Q Consensus       161 ----------------------~~L~~L~L~~c~~l~~~~~~~-----~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L  212 (583)
                                            ++|++|++++|......+..+     .+|+.|++++|.++.++ ..++.+++|++|++
T Consensus       200 L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  279 (680)
T 1ziw_A          200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL  279 (680)
T ss_dssp             EECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             hhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeC
Confidence                                  344555555543222222222     23777777777776554 34666777777777


Q ss_pred             eCCCCCccccccc---------------------------------cCCCCCcEEEccCCCCCCccccccCCCCcccEEE
Q 036772          213 TNCSRLKSVSNSL---------------------------------CNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIML  259 (583)
Q Consensus       213 ~~~~~l~~lp~~l---------------------------------~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~  259 (583)
                      ++|......|..+                                 ..+++|++|++++|...+..+..+..+++|+.|+
T Consensus       280 ~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  359 (680)
T 1ziw_A          280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS  359 (680)
T ss_dssp             CSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEE
T ss_pred             CCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEE
Confidence            7765544444444                                 4455555555555555555555677777788888


Q ss_pred             ccCCccc--------------cCccEEEeccCCCccc-CccCCCCCCCCEEEccCCCCc-ccC-hhhhccCccccccccc
Q 036772          260 ANETAIS--------------QNLVDMSLVDCGITEL-PESLGRSPSLKFLNLAENDFE-KIP-SSIKQLSNLLFLTLQN  322 (583)
Q Consensus       260 l~~~~i~--------------~~L~~L~L~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~-~lp-~~i~~l~~L~~L~L~~  322 (583)
                      +++|.+.              ..|+.|++++|.++++ |..+..+++|+.|++++|.++ .+| ..+..+++|+.|++++
T Consensus       360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~  439 (680)
T 1ziw_A          360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY  439 (680)
T ss_dssp             CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCS
T ss_pred             CCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCC
Confidence            7776421              2478888888888885 567888999999999999987 465 5678889999999988


Q ss_pred             ccccccCC-----CCCCCCeeeeeCC---------cCcccccCccccccccccc
Q 036772          323 CKRLQSLP-----ELPCGSNIFARYC---------TSLETLSNLSTLFTRSSEL  362 (583)
Q Consensus       323 c~~L~~lp-----~lp~~~~l~~~~c---------~sL~~l~~l~~l~~~~~~~  362 (583)
                      |+ +..++     .+|....+...++         ..+..+++|+.+.+..+.+
T Consensus       440 n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l  492 (680)
T 1ziw_A          440 NK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI  492 (680)
T ss_dssp             CS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC
T ss_pred             CC-cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCC
Confidence            85 33322     2222224433322         2344556666666655543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=2.4e-26  Score=252.77  Aligned_cols=142  Identities=18%  Similarity=0.182  Sum_probs=108.4

Q ss_pred             CCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCcccccc--------------------ccCCCCCcEEEccCCCC
Q 036772          182 CNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNS--------------------LCNLKSLQYLFLSGCLK  241 (583)
Q Consensus       182 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~--------------------l~~l~~L~~L~l~~c~~  241 (583)
                      .+|+.|+++++.++.+|..+..+ +|+.|++++|... .+|..                    ...+++|++|++++|..
T Consensus       282 ~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l  359 (570)
T 2z63_A          282 TNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGL  359 (570)
T ss_dssp             TTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCC
T ss_pred             CcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCcc
Confidence            56777777777777777766666 6666666665543 22221                    15678899999988765


Q ss_pred             CCc--cccccCCCCcccEEEccCCcccc---------CccEEEeccCCCcccC--ccCCCCCCCCEEEccCCCCcc-cCh
Q 036772          242 LEK--LPEEIGNLESLKIMLANETAISQ---------NLVDMSLVDCGITELP--ESLGRSPSLKFLNLAENDFEK-IPS  307 (583)
Q Consensus       242 l~~--lp~~l~~l~~L~~L~l~~~~i~~---------~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~-lp~  307 (583)
                      ...  .|..+..+++|+.|++++|.+..         .|+.|++++|.+.+.+  ..+..+++|++|++++|.++. .|.
T Consensus       360 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  439 (570)
T 2z63_A          360 SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG  439 (570)
T ss_dssp             BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred             CccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh
Confidence            433  26778899999999999987653         3899999999988854  468899999999999999885 566


Q ss_pred             hhhccCcccccccccccc
Q 036772          308 SIKQLSNLLFLTLQNCKR  325 (583)
Q Consensus       308 ~i~~l~~L~~L~L~~c~~  325 (583)
                      .+..+++|+.|++++|.-
T Consensus       440 ~~~~l~~L~~L~l~~n~l  457 (570)
T 2z63_A          440 IFNGLSSLEVLKMAGNSF  457 (570)
T ss_dssp             TTTTCTTCCEEECTTCEE
T ss_pred             hhhcCCcCcEEECcCCcC
Confidence            788999999999999854

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=1.4e-25  Score=235.25  Aligned_cols=290  Identities=14%  Similarity=0.125  Sum_probs=222.5

Q ss_pred             CCccEEEecCCCCCCCCCCC--CCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEee
Q 036772           46 NELRYFQWDGYPLKSLPSKN--IPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDL  121 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L  121 (583)
                      .++++|+++++.++.+|..+  .+++|++|++++|.++.++. .+..+++|++|+|++|......|. ++.+++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            58999999999999999864  78999999999999998875 689999999999999987666664 789999999999


Q ss_pred             eCCCCchhhhhh-ccCCCCCCEEEccCCCCCCcCCC-cC-CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCcccc
Q 036772          122 VGCASLIEIHSS-IQHLNKLVFLNLGRCISLKSLPT-GI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELP  198 (583)
Q Consensus       122 ~~~~~l~~~~~~-i~~l~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp  198 (583)
                      ++|... .+|.. ++.+++|++|++++| .++.++. .+ .+++|++|++++|..-..-...+++|+.|++++|.++.++
T Consensus       125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~  202 (390)
T 3o6n_A          125 ERNDLS-SLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA  202 (390)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred             CCCccC-cCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC
Confidence            998654 56654 589999999999995 4555544 45 7999999999997654444466788999999999887654


Q ss_pred             ccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCC
Q 036772          199 SSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCG  278 (583)
Q Consensus       199 ~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~  278 (583)
                          ..++|+.|++++|.... +|..  ..++|+.|++++|.....  ..+..+++|+.|++++|.+             
T Consensus       203 ----~~~~L~~L~l~~n~l~~-~~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l-------------  260 (390)
T 3o6n_A          203 ----IPIAVEELDASHNSINV-VRGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNEL-------------  260 (390)
T ss_dssp             ----CCSSCSEEECCSSCCCE-EECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC-------------
T ss_pred             ----CCCcceEEECCCCeeee-cccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcC-------------
Confidence                34689999999876543 3432  357899999998865542  4566777777666666554             


Q ss_pred             Ccc-cCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccccccccCCCCCCCCeeeeeCCcCcccccCcccccc
Q 036772          279 ITE-LPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFT  357 (583)
Q Consensus       279 l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~~l~~~~c~sL~~l~~l~~l~~  357 (583)
                       .+ .|..+..+++|++|++++|.++.+|..+..+++|+.|++++| .+..+|.             .+..+++|+.+.+
T Consensus       261 -~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-------------~~~~l~~L~~L~L  325 (390)
T 3o6n_A          261 -EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVER-------------NQPQFDRLENLYL  325 (390)
T ss_dssp             -CEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSS-CCCCCGG-------------GHHHHTTCSEEEC
T ss_pred             -CCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCC-cceecCc-------------cccccCcCCEEEC
Confidence             44 477899999999999999999999988889999999999998 5666552             2344555666666


Q ss_pred             cccccceeeeecccccCC
Q 036772          358 RSSELWQAFDFCNCFKLN  375 (583)
Q Consensus       358 ~~~~~~~~l~~~~C~~L~  375 (583)
                      .+|.+ ..+.+..+.+|.
T Consensus       326 ~~N~i-~~~~~~~~~~L~  342 (390)
T 3o6n_A          326 DHNSI-VTLKLSTHHTLK  342 (390)
T ss_dssp             CSSCC-CCCCCCTTCCCS
T ss_pred             CCCcc-ceeCchhhccCC
Confidence            65554 233455555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=3.7e-25  Score=248.81  Aligned_cols=309  Identities=22%  Similarity=0.245  Sum_probs=211.8

Q ss_pred             CCcceEEEecCCCCCCccceecCCcccccC-CCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhc-ccccCCC
Q 036772           16 RRLRFFKFYNSFPEMNKCKVRHSRCLESFF-NELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLW-NGVQNLA   91 (583)
Q Consensus        16 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~-~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~-~~~~~l~   91 (583)
                      ++|+.|++++|.     .....+..+..+. .+|+.|++++|.++.++.. + .+++|++|++++|.+..++ ..+..++
T Consensus       222 ~~L~~L~L~~n~-----l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  296 (680)
T 1ziw_A          222 TSIRNLSLSNSQ-----LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF  296 (680)
T ss_dssp             SCCCEEECTTSC-----CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCT
T ss_pred             ccccEEEccCCc-----ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCC
Confidence            667888887774     3344456666653 3599999999998877643 4 7889999999999888654 4588899


Q ss_pred             CccEEeccCCCCCC-----CCC-----CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCC-CCCcCCCcC--
Q 036772           92 ALKRLNLSYCKQLS-----RIP-----DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCI-SLKSLPTGI--  158 (583)
Q Consensus        92 ~L~~L~Ls~~~~l~-----~~p-----~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~-~l~~lp~~~--  158 (583)
                      +|+.|++++|....     .+|     .+..+++|++|++++|......+..+..+++|++|++++|. .+..++...  
T Consensus       297 ~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~  376 (680)
T 1ziw_A          297 NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFV  376 (680)
T ss_dssp             TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTG
T ss_pred             CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhc
Confidence            99999998765332     233     46778899999999887766666778888999999988763 233343322  


Q ss_pred             --CCCCccEEEecCCCCcccccc---cCCCcCEEeccCCCCc-ccc-ccccCCCCccEEeeeCCCCCccccccccCCCCC
Q 036772          159 --NLDSLKVLYLGGCSNLKRFLE---ISCNIENLDLSETAIE-ELP-SSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSL  231 (583)
Q Consensus       159 --~l~~L~~L~L~~c~~l~~~~~---~~~~L~~L~L~~~~i~-~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L  231 (583)
                        ..++|+.|++++|......|.   ...+|+.|++++|.+. .+| ..+..+++|++|++++|......+..+..+++|
T Consensus       377 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L  456 (680)
T 1ziw_A          377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL  456 (680)
T ss_dssp             GGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTC
T ss_pred             ccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccc
Confidence              235777788777654433332   3456777888877776 354 457777777788777776655556666677777


Q ss_pred             cEEEccCCCCC--CccccccCCCCcccEEEccCCccccC----------ccEEEeccCCCcccCc---------cCCCCC
Q 036772          232 QYLFLSGCLKL--EKLPEEIGNLESLKIMLANETAISQN----------LVDMSLVDCGITELPE---------SLGRSP  290 (583)
Q Consensus       232 ~~L~l~~c~~l--~~lp~~l~~l~~L~~L~l~~~~i~~~----------L~~L~L~~~~l~~lp~---------~l~~l~  290 (583)
                      +.|++++|...  +..|..+..+++|+.|++++|.+...          |+.|++++|.++.++.         .+..++
T Consensus       457 ~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~  536 (680)
T 1ziw_A          457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS  536 (680)
T ss_dssp             CEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT
T ss_pred             ccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCC
Confidence            77777776542  45666677777777777777665432          6777777777665421         256677


Q ss_pred             CCCEEEccCCCCcccChh-hhccCcccccccccccccccCC
Q 036772          291 SLKFLNLAENDFEKIPSS-IKQLSNLLFLTLQNCKRLQSLP  330 (583)
Q Consensus       291 ~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~~lp  330 (583)
                      +|+.|+|++|.++.+|.. +..+++|+.|++++| +++.+|
T Consensus       537 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~  576 (680)
T 1ziw_A          537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN-NLNTLP  576 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred             CCCEEECCCCCCCCCCHHHcccccCcceeECCCC-CCCcCC
Confidence            777777777777777653 567777777777665 455555

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.93  E-value=1.3e-24  Score=232.23  Aligned_cols=308  Identities=22%  Similarity=0.236  Sum_probs=219.8

Q ss_pred             CCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccE
Q 036772           16 RRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKR   95 (583)
Q Consensus        16 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~   95 (583)
                      ++|+.|++++|.+      ..+|..    +.+|++|++++|.++.+|..  +++|++|++++|.++.+| .+.++++|++
T Consensus        91 ~~L~~L~l~~n~l------~~lp~~----~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~lp-~~~~l~~L~~  157 (454)
T 1jl5_A           91 PHLESLVASCNSL------TELPEL----PQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLP-ELQNSSFLKI  157 (454)
T ss_dssp             TTCSEEECCSSCC------SSCCCC----CTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred             CCCCEEEccCCcC------Cccccc----cCCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence            5799999988853      235542    36899999999999888764  378999999999999988 5999999999


Q ss_pred             EeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcc
Q 036772           96 LNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLK  175 (583)
Q Consensus        96 L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~  175 (583)
                      |++++|+.. .+|..  .++|++|++++|... .+| .++.+++|+.|++++| .++.+|..  .++|++|++++|. +.
T Consensus       158 L~l~~N~l~-~lp~~--~~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~N-~l~~l~~~--~~~L~~L~l~~n~-l~  228 (454)
T 1jl5_A          158 IDVDNNSLK-KLPDL--PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNN-SLKKLPDL--PLSLESIVAGNNI-LE  228 (454)
T ss_dssp             EECCSSCCS-CCCCC--CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSS-CCSSCCCC--CTTCCEEECCSSC-CS
T ss_pred             EECCCCcCc-ccCCC--cccccEEECcCCcCC-cCc-cccCCCCCCEEECCCC-cCCcCCCC--cCcccEEECcCCc-CC
Confidence            999999654 46643  358999999998644 466 6899999999999985 56666653  3689999999974 44


Q ss_pred             cccc--cCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCC
Q 036772          176 RFLE--ISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLE  253 (583)
Q Consensus       176 ~~~~--~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~  253 (583)
                      .+|.  .+++|+.|++++|.++.+|..   +++|+.|++++|.... +|..   .++|++|++++|...+ +|..   .+
T Consensus       229 ~lp~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~  297 (454)
T 1jl5_A          229 ELPELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PP  297 (454)
T ss_dssp             SCCCCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CT
T ss_pred             cccccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CC
Confidence            6664  345789999999999988863   4789999999886543 5543   4789999999976433 3321   26


Q ss_pred             cccEEEccCCcccc------CccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccccccc
Q 036772          254 SLKIMLANETAISQ------NLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQ  327 (583)
Q Consensus       254 ~L~~L~l~~~~i~~------~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~  327 (583)
                      +|+.|++++|.+..      .|+.|++++|.++++|..   +++|+.|++++|.++.+|.   .+++|+.|++++| .++
T Consensus       298 ~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N-~l~  370 (454)
T 1jl5_A          298 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYN-PLR  370 (454)
T ss_dssp             TCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCS
T ss_pred             cCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccccccc---hhhhccEEECCCC-CCC
Confidence            88899999887764      589999999999888765   5889999999999998887   4788999999987 667


Q ss_pred             cCCCCCCCC-eeeeeCC--cCcccccCcccccccccccc
Q 036772          328 SLPELPCGS-NIFARYC--TSLETLSNLSTLFTRSSELW  363 (583)
Q Consensus       328 ~lp~lp~~~-~l~~~~c--~sL~~l~~l~~l~~~~~~~~  363 (583)
                      .+|.+|..+ .+.....  .-...+++|+.+.+..|.+.
T Consensus       371 ~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~  409 (454)
T 1jl5_A          371 EFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR  409 (454)
T ss_dssp             SCCCCCTTCCEEECCC-----------------------
T ss_pred             cCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence            777777665 4321100  00011245666666666543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.93  E-value=1.1e-24  Score=232.96  Aligned_cols=280  Identities=18%  Similarity=0.142  Sum_probs=215.9

Q ss_pred             CCCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCC
Q 036772           13 FRMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAA   92 (583)
Q Consensus        13 ~~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~   92 (583)
                      .++++|+.|++++|.+      ..+| ++..+ ++|++|++++|.++.+| ...+++|++|++++|.++.++  +..+++
T Consensus        39 ~~l~~L~~L~Ls~n~l------~~~~-~l~~l-~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~  107 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSI------TDMT-GIEKL-TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTK  107 (457)
T ss_dssp             HHHTTCCEEECCSSCC------CCCT-TGGGC-TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTT
T ss_pred             hHcCCCCEEEccCCCc------ccCh-hhccc-CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCc
Confidence            3789999999999853      2345 67777 59999999999999997 448899999999999999885  889999


Q ss_pred             ccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCC
Q 036772           93 LKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCS  172 (583)
Q Consensus        93 L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~  172 (583)
                      |++|++++|.... ++ ++.+++|++|++++|.... +  .++.+++|+.|++++|..++.++ ...+++|++|++++|.
T Consensus       108 L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          108 LTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             CCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCc
Confidence            9999999996554 55 8999999999999987544 4  38899999999999987888773 2279999999999974


Q ss_pred             Cccccc-ccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCC
Q 036772          173 NLKRFL-EISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGN  251 (583)
Q Consensus       173 ~l~~~~-~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~  251 (583)
                       +..+| ...++|+.|++++|.++.++  ++.+++|+.|++++|.... +|  +..+++|+.|++++|...+ +|  ++.
T Consensus       182 -l~~l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~-~~--~~~  252 (457)
T 3bz5_A          182 -ITELDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE-LD--VST  252 (457)
T ss_dssp             -CCCCCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTT
T ss_pred             -cceeccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC-cC--HHH
Confidence             44444 34568999999999999884  8899999999999987655 66  8899999999999986554 34  456


Q ss_pred             CCcccEEEccCCccccCccEEEeccCCCcc-cCccCCCCCCCCEEEccCCCC-cccChhhhccCcccccccccccccc
Q 036772          252 LESLKIMLANETAISQNLVDMSLVDCGITE-LPESLGRSPSLKFLNLAENDF-EKIPSSIKQLSNLLFLTLQNCKRLQ  327 (583)
Q Consensus       252 l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l-~~lp~~i~~l~~L~~L~L~~c~~L~  327 (583)
                      +++|+.|+++.+.    |+.|++++|...+ +|  ++.+++|+.|++++|.. ..+|.   ..++|+.|++++|+.|+
T Consensus       253 l~~L~~L~l~~n~----L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~~~L~  321 (457)
T 3bz5_A          253 LSKLTTLHCIQTD----LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQNPKLV  321 (457)
T ss_dssp             CTTCCEEECTTCC----CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTCTTCC
T ss_pred             CCCCCEEeccCCC----CCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhcccCC
Confidence            7788888888775    5566777776443 44  45667777777777763 34442   22334444444444433

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=5.9e-25  Score=243.32  Aligned_cols=260  Identities=15%  Similarity=0.102  Sum_probs=207.7

Q ss_pred             CCccEEEecCCCCCCCCCCC--CCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEee
Q 036772           46 NELRYFQWDGYPLKSLPSKN--IPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDL  121 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L  121 (583)
                      .+++.|+++++.+..+|+.+  .+++|++|++++|.+..++. .+..+++|++|+|++|......|. |+.+++|++|+|
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            58999999999999999864  68999999999999998875 689999999999999986666554 789999999999


Q ss_pred             eCCCCchhhhh-hccCCCCCCEEEccCCCCCCcCC-CcC-CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCcccc
Q 036772          122 VGCASLIEIHS-SIQHLNKLVFLNLGRCISLKSLP-TGI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELP  198 (583)
Q Consensus       122 ~~~~~l~~~~~-~i~~l~~L~~L~L~~c~~l~~lp-~~~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp  198 (583)
                      ++|... .+|. .++.+++|++|+|++|. +..++ ..+ .+++|++|++++|..-..-+..+++|+.|++++|.++.++
T Consensus       131 ~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~  208 (597)
T 3oja_B          131 ERNDLS-SLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA  208 (597)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE
T ss_pred             eCCCCC-CCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc
Confidence            998654 5554 46899999999999964 45544 445 8999999999997654444566788999999999887654


Q ss_pred             ccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCC
Q 036772          199 SSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCG  278 (583)
Q Consensus       199 ~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~  278 (583)
                          ..++|+.|++++|... .++..+  .++|+.|++++|...+  +..+..+++|+.|++++|.+...          
T Consensus       209 ----~~~~L~~L~ls~n~l~-~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~----------  269 (597)
T 3oja_B          209 ----IPIAVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI----------  269 (597)
T ss_dssp             ----CCTTCSEEECCSSCCC-EEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE----------
T ss_pred             ----CCchhheeeccCCccc-cccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCC----------
Confidence                4568999999987654 334333  3689999999987654  35677777777766666654431          


Q ss_pred             CcccCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccccccccCC
Q 036772          279 ITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLP  330 (583)
Q Consensus       279 l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp  330 (583)
                         .|..++.+++|+.|+|++|.++.+|..+..+++|+.|+|++| .+..+|
T Consensus       270 ---~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~  317 (597)
T 3oja_B          270 ---MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVE  317 (597)
T ss_dssp             ---ESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSS-CCCCCG
T ss_pred             ---CHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCC-CCCccC
Confidence               578899999999999999999999988888999999999998 455555

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=4.4e-24  Score=218.52  Aligned_cols=279  Identities=18%  Similarity=0.208  Sum_probs=176.8

Q ss_pred             CcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhh-cccccCCCCc
Q 036772           17 RLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQL-WNGVQNLAAL   93 (583)
Q Consensus        17 ~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l-~~~~~~l~~L   93 (583)
                      +|+.++++++.      ...+|..+   ++.|++|++++|.++.+|.. + .+++|++|++++|.++.+ |..+..+++|
T Consensus        32 ~l~~l~~~~~~------l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (330)
T 1xku_A           32 HLRVVQCSDLG------LEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL  102 (330)
T ss_dssp             ETTEEECTTSC------CCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CCeEEEecCCC------ccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence            56777776552      33445433   35777778877777777653 3 677777888877777766 5567777778


Q ss_pred             cEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCC--cCCCcC-CCCCccEEEec
Q 036772           94 KRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLK--SLPTGI-NLDSLKVLYLG  169 (583)
Q Consensus        94 ~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~--~lp~~~-~l~~L~~L~L~  169 (583)
                      ++|+|++|... .+|. +.  ++|++|++++|......+..+..+++|+.|++++|....  ..+..+ .+++|++|+++
T Consensus       103 ~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  179 (330)
T 1xku_A          103 ERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA  179 (330)
T ss_dssp             CEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred             CEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence            88888777543 4442 22  677777777776555555567777777888777753321  334444 67777777777


Q ss_pred             CCCCccccccc-CCCcCEEeccCCCCccc-cccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcccc
Q 036772          170 GCSNLKRFLEI-SCNIENLDLSETAIEEL-PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPE  247 (583)
Q Consensus       170 ~c~~l~~~~~~-~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~  247 (583)
                      +|. +..+|.. ..+|+.|++++|.++.+ |..+..+++|+.|++++|......+..+..+++|++|++++|. +..+|.
T Consensus       180 ~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~  257 (330)
T 1xku_A          180 DTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPG  257 (330)
T ss_dssp             SSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCT
T ss_pred             CCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCCh
Confidence            754 3334432 35677777777777765 4457777777777777776655555567777777777777764 346666


Q ss_pred             ccCCCCcccEEEccCCccccCccEEEeccCCCcccCc-cC------CCCCCCCEEEccCCCCcc--c-ChhhhccCcccc
Q 036772          248 EIGNLESLKIMLANETAISQNLVDMSLVDCGITELPE-SL------GRSPSLKFLNLAENDFEK--I-PSSIKQLSNLLF  317 (583)
Q Consensus       248 ~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~-~l------~~l~~L~~L~Ls~n~l~~--l-p~~i~~l~~L~~  317 (583)
                      .+..+++|+.|++++|.+..              ++. .+      ...++|+.|++++|.+..  + |..+..+.+|+.
T Consensus       258 ~l~~l~~L~~L~l~~N~i~~--------------~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~  323 (330)
T 1xku_A          258 GLADHKYIQVVYLHNNNISA--------------IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA  323 (330)
T ss_dssp             TTTTCSSCCEEECCSSCCCC--------------CCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred             hhccCCCcCEEECCCCcCCc--------------cChhhcCCcccccccccccceEeecCcccccccCccccccccceeE
Confidence            66666666666666555443              332 12      124677777787777652  3 345666777777


Q ss_pred             cccccc
Q 036772          318 LTLQNC  323 (583)
Q Consensus       318 L~L~~c  323 (583)
                      +++++|
T Consensus       324 l~L~~N  329 (330)
T 1xku_A          324 VQLGNY  329 (330)
T ss_dssp             EEC---
T ss_pred             EEeccc
Confidence            777765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.93  E-value=5.6e-24  Score=227.21  Aligned_cols=271  Identities=25%  Similarity=0.305  Sum_probs=202.8

Q ss_pred             CCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCC
Q 036772           45 FNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGC  124 (583)
Q Consensus        45 ~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~  124 (583)
                      |++|++|++++|.++.+|..  +++|++|++++|.++.++..   .++|++|++++|... .+|+++.+++|++|++++|
T Consensus        90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~-~lp~~~~l~~L~~L~l~~N  163 (454)
T 1jl5_A           90 PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLE-KLPELQNSSFLKIIDVDNN  163 (454)
T ss_dssp             CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSS
T ss_pred             cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCC-CCcccCCCCCCCEEECCCC
Confidence            35666666666666666643  35667777777666655432   267888888888654 4778888888888888887


Q ss_pred             CCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCC
Q 036772          125 ASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNL  204 (583)
Q Consensus       125 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l  204 (583)
                      ... .+|..   ..+|++|++++| .++.+|....+++|++|++++|. +..+|....+|+.|++++|.++.+|. ++.+
T Consensus       164 ~l~-~lp~~---~~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l  236 (454)
T 1jl5_A          164 SLK-KLPDL---PPSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELPE-LQNL  236 (454)
T ss_dssp             CCS-CCCCC---CTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCCC-CTTC
T ss_pred             cCc-ccCCC---cccccEEECcCC-cCCcCccccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCcccc-cCCC
Confidence            543 45543   358888888885 56667743389999999999864 55577777899999999999998885 8899


Q ss_pred             CCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcccc------CccEEEeccCC
Q 036772          205 SRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ------NLVDMSLVDCG  278 (583)
Q Consensus       205 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~------~L~~L~L~~~~  278 (583)
                      ++|++|++++|... .+|..   +++|++|++++|... .+|..   +++|+.|++++|.+..      .|+.|++++|.
T Consensus       237 ~~L~~L~l~~N~l~-~l~~~---~~~L~~L~l~~N~l~-~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~  308 (454)
T 1jl5_A          237 PFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLT-DLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNE  308 (454)
T ss_dssp             TTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCcCC-ccccc---ccccCEEECCCCccc-ccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCc
Confidence            99999999997654 45543   478999999987644 46653   4789999999987765      49999999999


Q ss_pred             CcccCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccccccccCCCCCCCC-eeeeeCC
Q 036772          279 ITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGS-NIFARYC  343 (583)
Q Consensus       279 l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~-~l~~~~c  343 (583)
                      +++++..   .++|+.|++++|.++.+|..   +++|+.|++++| +++.+|..+..+ .+...++
T Consensus       309 l~~i~~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~l~~lp~~l~~L~~L~L~~N  367 (454)
T 1jl5_A          309 IRSLCDL---PPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPELPQNLKQLHVEYN  367 (454)
T ss_dssp             CSEECCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS
T ss_pred             CCcccCC---cCcCCEEECCCCcccccccc---CCcCCEEECCCC-ccccccchhhhccEEECCCC
Confidence            9886632   25899999999999998865   589999999998 677888755555 5555443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.93  E-value=3.5e-24  Score=228.97  Aligned_cols=296  Identities=17%  Similarity=0.142  Sum_probs=224.7

Q ss_pred             CcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCE
Q 036772           39 RCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEW  118 (583)
Q Consensus        39 ~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~  118 (583)
                      ..+..+ ++|++|+++++.++.+|....+++|++|++++|.++.++  +..+++|++|++++|.... ++ ++.+++|++
T Consensus        36 ~~~~~l-~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~-~~~l~~L~~  110 (457)
T 3bz5_A           36 ISEEQL-ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD-VTPLTKLTY  110 (457)
T ss_dssp             EEHHHH-TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCE
T ss_pred             cChhHc-CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee-cCCCCcCCE
Confidence            355666 599999999999999985458999999999999999885  8899999999999997544 44 889999999


Q ss_pred             EeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCccccc-ccCCCcCEEeccCCCCccc
Q 036772          119 LDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFL-EISCNIENLDLSETAIEEL  197 (583)
Q Consensus       119 L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~-~~~~~L~~L~L~~~~i~~l  197 (583)
                      |++++|.... ++  ++.+++|+.|++++| .++.++ ...+++|++|++++|..+..++ ..+.+|+.|++++|.++.+
T Consensus       111 L~L~~N~l~~-l~--~~~l~~L~~L~l~~N-~l~~l~-l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l  185 (457)
T 3bz5_A          111 LNCDTNKLTK-LD--VSQNPLLTYLNCARN-TLTEID-VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL  185 (457)
T ss_dssp             EECCSSCCSC-CC--CTTCTTCCEEECTTS-CCSCCC-CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC
T ss_pred             EECCCCcCCe-ec--CCCCCcCCEEECCCC-ccceec-cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee
Confidence            9999986543 44  889999999999985 566664 2279999999999997776653 3457899999999999998


Q ss_pred             cccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccC
Q 036772          198 PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDC  277 (583)
Q Consensus       198 p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~  277 (583)
                      |  ++.+++|+.|++++|.....   .+..+++|++|++++|...+ +|  ++.+++|+.|++++|.+..          
T Consensus       186 ~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~----------  247 (457)
T 3bz5_A          186 D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE----------  247 (457)
T ss_dssp             C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC----------
T ss_pred             c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC----------
Confidence            7  88999999999999876543   37889999999999986554 66  7788888888777776554          


Q ss_pred             CCcccCccCCCCCCCCEEEccCCCCc-----------ccChhhhccCcccccccccccccccCCCCCCCC-eeeeeCCcC
Q 036772          278 GITELPESLGRSPSLKFLNLAENDFE-----------KIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGS-NIFARYCTS  345 (583)
Q Consensus       278 ~l~~lp~~l~~l~~L~~L~Ls~n~l~-----------~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~-~l~~~~c~s  345 (583)
                          +|  ++.+++|+.|++++|.++           .+|  .+.+++|+.|++++|+.+..+|.-...+ .+...+   
T Consensus       248 ----~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~---  316 (457)
T 3bz5_A          248 ----LD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ---  316 (457)
T ss_dssp             ----CC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT---
T ss_pred             ----cC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhh---
Confidence                33  344555555555544443           334  4678999999999999888877432333 343333   


Q ss_pred             cccccCcccccccccccceeeeecccccCCcc
Q 036772          346 LETLSNLSTLFTRSSELWQAFDFCNCFKLNRN  377 (583)
Q Consensus       346 L~~l~~l~~l~~~~~~~~~~l~~~~C~~L~~~  377 (583)
                         .++|+.+.+..|.+.. +++.+|.+|..-
T Consensus       317 ---~~~L~~L~L~~N~l~~-l~l~~l~~L~~L  344 (457)
T 3bz5_A          317 ---NPKLVYLYLNNTELTE-LDVSHNTKLKSL  344 (457)
T ss_dssp             ---CTTCCEEECTTCCCSC-CCCTTCTTCSEE
T ss_pred             ---cccCCEEECCCCcccc-cccccCCcCcEE
Confidence               3455666666666433 567777776543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=3.3e-24  Score=219.67  Aligned_cols=279  Identities=17%  Similarity=0.215  Sum_probs=145.6

Q ss_pred             CcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChhhh-cccccCCCCc
Q 036772           17 RLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQL-WNGVQNLAAL   93 (583)
Q Consensus        17 ~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l-~~~~~~l~~L   93 (583)
                      +|+.++++++.      ...+|..+   +++|++|++++|.++.+++ .+ .+++|++|++++|.++.+ +..+..+++|
T Consensus        34 ~l~~l~~~~~~------l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  104 (332)
T 2ft3_A           34 HLRVVQCSDLG------LKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL  104 (332)
T ss_dssp             ETTEEECCSSC------CSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred             cCCEEECCCCC------ccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence            45666665542      23344433   2456666666666665543 23 556666666666666654 4446666666


Q ss_pred             cEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCC--CcCCCcC-CCCCccEEEec
Q 036772           94 KRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISL--KSLPTGI-NLDSLKVLYLG  169 (583)
Q Consensus        94 ~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l--~~lp~~~-~l~~L~~L~L~  169 (583)
                      ++|+|++|... .+|. +.  ++|++|++++|......+..++.+++|+.|++++|..-  ...|..+ .+ +|++|+++
T Consensus       105 ~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~  180 (332)
T 2ft3_A          105 QKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS  180 (332)
T ss_dssp             CEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred             CEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence            66666666433 3332 22  56666666665443333334566666666666654321  1223333 23 56666666


Q ss_pred             CCCCccccccc-CCCcCEEeccCCCCcccc-ccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcccc
Q 036772          170 GCSNLKRFLEI-SCNIENLDLSETAIEELP-SSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPE  247 (583)
Q Consensus       170 ~c~~l~~~~~~-~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~  247 (583)
                      +|. +..+|.. ..+|+.|++++|.++.++ ..+..+++|+.|++++|......+..+..+++|++|++++|. +..+|.
T Consensus       181 ~n~-l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~  258 (332)
T 2ft3_A          181 EAK-LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPA  258 (332)
T ss_dssp             SSB-CSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCT
T ss_pred             CCC-CCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecCh
Confidence            543 3333322 235666666666666554 345566666666666655544444455566666666666553 235555


Q ss_pred             ccCCCCcccEEEccCCccccCccEEEeccCCCcccC-ccCCC------CCCCCEEEccCCCCc--cc-ChhhhccCcccc
Q 036772          248 EIGNLESLKIMLANETAISQNLVDMSLVDCGITELP-ESLGR------SPSLKFLNLAENDFE--KI-PSSIKQLSNLLF  317 (583)
Q Consensus       248 ~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~------l~~L~~L~Ls~n~l~--~l-p~~i~~l~~L~~  317 (583)
                      .+..+++|+.|++++|.+.              +++ ..+..      .++|+.|++++|.+.  .+ |..+..+++|+.
T Consensus       259 ~l~~l~~L~~L~l~~N~l~--------------~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~  324 (332)
T 2ft3_A          259 GLPDLKLLQVVYLHTNNIT--------------KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA  324 (332)
T ss_dssp             TGGGCTTCCEEECCSSCCC--------------BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTT
T ss_pred             hhhcCccCCEEECCCCCCC--------------ccChhHccccccccccccccceEeecCcccccccCcccccccchhhh
Confidence            5555555555555444433              233 12211      356677777777665  23 344566677777


Q ss_pred             ccccccc
Q 036772          318 LTLQNCK  324 (583)
Q Consensus       318 L~L~~c~  324 (583)
                      +++++|+
T Consensus       325 l~l~~n~  331 (332)
T 2ft3_A          325 IQFGNYK  331 (332)
T ss_dssp             EEC----
T ss_pred             hhccccc
Confidence            7776654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=1.7e-24  Score=221.46  Aligned_cols=230  Identities=25%  Similarity=0.327  Sum_probs=161.2

Q ss_pred             CCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEc
Q 036772           67 PEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNL  145 (583)
Q Consensus        67 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L  145 (583)
                      ..++++|++++|.++.+|..+.++++|++|+|++|... .+| .++.+++|++|+|++|... .+|..++.+++|++|++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            35677777777777777777777777888888777655 555 4777778888888876544 67777888888888888


Q ss_pred             cCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccc
Q 036772          146 GRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSL  225 (583)
Q Consensus       146 ~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l  225 (583)
                      ++|+.++.+|..+.     ...+.+      ....+.+|+.|++++|.++.+|..++.+++|++|++++|... .+|..+
T Consensus       158 ~~n~~~~~~p~~~~-----~~~~~~------~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l  225 (328)
T 4fcg_A          158 RACPELTELPEPLA-----STDASG------EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAI  225 (328)
T ss_dssp             EEETTCCCCCSCSE-----EEC-CC------CEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGG
T ss_pred             CCCCCccccChhHh-----hccchh------hhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhh
Confidence            88777777776551     011100      012233455555555666677777777788888888877654 466667


Q ss_pred             cCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCc-c
Q 036772          226 CNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFE-K  304 (583)
Q Consensus       226 ~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~-~  304 (583)
                      ..+++|++|++++|...+.+|..++.+++|+.|++++|.+..             .+|..++.+++|+.|+|++|.+. .
T Consensus       226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-------------~~p~~~~~l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-------------TLPLDIHRLTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC-------------BCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred             ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh-------------hcchhhhcCCCCCEEeCCCCCchhh
Confidence            777888888888877777777777777777766666654332             36777888888888888887754 7


Q ss_pred             cChhhhccCcccccccccc
Q 036772          305 IPSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       305 lp~~i~~l~~L~~L~L~~c  323 (583)
                      +|..++.+++|+.+++...
T Consensus       293 iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          293 LPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CCGGGGGSCTTCEEECCGG
T ss_pred             ccHHHhhccCceEEeCCHH
Confidence            8888888888888887753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.91  E-value=8.4e-24  Score=216.65  Aligned_cols=258  Identities=19%  Similarity=0.192  Sum_probs=206.6

Q ss_pred             CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeC
Q 036772           46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVG  123 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~  123 (583)
                      .+++.++++++.++.+|..+ .++|++|++++|.++.++. .+.++++|++|+|++|......| .+..+++|++|++++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  111 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK  111 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred             ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence            36999999999999999866 4789999999999998854 69999999999999997666555 589999999999999


Q ss_pred             CCCchhhhhhccCCCCCCEEEccCCCCCCcCCCc-C-CCCCccEEEecCCCCcc--cccccCC--CcCEEeccCCCCccc
Q 036772          124 CASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTG-I-NLDSLKVLYLGGCSNLK--RFLEISC--NIENLDLSETAIEEL  197 (583)
Q Consensus       124 ~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~L~~c~~l~--~~~~~~~--~L~~L~L~~~~i~~l  197 (583)
                      |.. ..+|..+.  ++|++|++++ +.++.+|.. + .+++|++|++++|..-.  ..+..+.  +|+.|++++|.++.+
T Consensus       112 n~l-~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l  187 (332)
T 2ft3_A          112 NHL-VEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGI  187 (332)
T ss_dssp             SCC-CSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSC
T ss_pred             CcC-CccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCcc
Confidence            764 46676555  8999999998 456777765 3 79999999999976421  2233222  788999999999999


Q ss_pred             cccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccC
Q 036772          198 PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDC  277 (583)
Q Consensus       198 p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~  277 (583)
                      |..+.  ++|+.|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|.             
T Consensus       188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-------------  252 (332)
T 2ft3_A          188 PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-------------  252 (332)
T ss_dssp             CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-------------
T ss_pred             Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-------------
Confidence            87654  799999999988777677888899999999999987666666677777777766666555             


Q ss_pred             CCcccCccCCCCCCCCEEEccCCCCcccChh-hhc------cCccccccccccc
Q 036772          278 GITELPESLGRSPSLKFLNLAENDFEKIPSS-IKQ------LSNLLFLTLQNCK  324 (583)
Q Consensus       278 ~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~------l~~L~~L~L~~c~  324 (583)
                       ++.+|..+..+++|+.|++++|.++.+|.. +..      ...|+.|++++|+
T Consensus       253 -l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          253 -LSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             -CCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             -CeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence             445888899999999999999999987643 222      4668888888875

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.91  E-value=3.2e-23  Score=212.09  Aligned_cols=258  Identities=20%  Similarity=0.212  Sum_probs=200.5

Q ss_pred             CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeC
Q 036772           46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVG  123 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~  123 (583)
                      .+++.++++++.++.+|..+ +++|++|++++|+++.++. .+.++++|++|+|++|......| .+..+++|++|++++
T Consensus        31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            37999999999999999765 4689999999999998876 58999999999999997766656 588999999999999


Q ss_pred             CCCchhhhhhccCCCCCCEEEccCCCCCCcCCCc-C-CCCCccEEEecCCCCcc--c---ccccCCCcCEEeccCCCCcc
Q 036772          124 CASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTG-I-NLDSLKVLYLGGCSNLK--R---FLEISCNIENLDLSETAIEE  196 (583)
Q Consensus       124 ~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~L~~c~~l~--~---~~~~~~~L~~L~L~~~~i~~  196 (583)
                      |. +..+|..+.  ++|+.|++++| .++.++.. + .+++|++|++++|..-.  .   ....+.+|+.|++++|.++.
T Consensus       110 n~-l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          110 NQ-LKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SC-CSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             Cc-CCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            76 446666554  79999999985 56666654 3 79999999999876421  1   22345788889999998888


Q ss_pred             ccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEecc
Q 036772          197 LPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVD  276 (583)
Q Consensus       197 lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~  276 (583)
                      +|..+.  ++|++|++++|......|..+..+++|++|++++|......+..+..+++|+.|++++|.            
T Consensus       186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~------------  251 (330)
T 1xku_A          186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK------------  251 (330)
T ss_dssp             CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC------------
T ss_pred             CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc------------
Confidence            887654  788999998887766667788888889999998887665555567777776666555554            


Q ss_pred             CCCcccCccCCCCCCCCEEEccCCCCcccChhhh-------ccCccccccccccc
Q 036772          277 CGITELPESLGRSPSLKFLNLAENDFEKIPSSIK-------QLSNLLFLTLQNCK  324 (583)
Q Consensus       277 ~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~-------~l~~L~~L~L~~c~  324 (583)
                        ++.+|..+..+++|++|++++|.++.+|...-       ..+.|+.|++++++
T Consensus       252 --l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          252 --LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             --CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             --CccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence              44588888899999999999999988765321       23667777777764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.91  E-value=3.8e-23  Score=229.81  Aligned_cols=125  Identities=16%  Similarity=0.138  Sum_probs=96.0

Q ss_pred             CcceEEEecCCCCCCccceecC-CcccccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhccc-ccCCCC
Q 036772           17 RLRFFKFYNSFPEMNKCKVRHS-RCLESFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLWNG-VQNLAA   92 (583)
Q Consensus        17 ~Lr~L~l~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~   92 (583)
                      +++.|++++|.      ...++ ..|..+ ++|++|++++|.++.+|+. | .+++|++|+|++|+++.++.+ +.++++
T Consensus        53 ~~~~LdLs~N~------i~~l~~~~f~~l-~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~  125 (635)
T 4g8a_A           53 STKNLDLSFNP------LRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  125 (635)
T ss_dssp             TCCEEECTTSC------CCEECTTTTTTC-TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred             CCCEEEeeCCC------CCCCCHHHHhCC-CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence            68888888884      34554 467777 4888888888888888764 4 688888888888888888754 788888


Q ss_pred             ccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCch-hhhhhccCCCCCCEEEccCC
Q 036772           93 LKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLI-EIHSSIQHLNKLVFLNLGRC  148 (583)
Q Consensus        93 L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~-~~~~~i~~l~~L~~L~L~~c  148 (583)
                      |++|+|++|......+ .|+.+++|++|++++|.... .+|..++.+++|++|++++|
T Consensus       126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence            8888888886544433 37888888888888876543 45677788888888888774

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=5.6e-24  Score=217.60  Aligned_cols=224  Identities=23%  Similarity=0.358  Sum_probs=175.3

Q ss_pred             CCccEEEecCCCCCCCCCCC-CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeC
Q 036772           46 NELRYFQWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVG  123 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~  123 (583)
                      .+++.|+++++.++.+|..+ .+++|++|++++|.++.+|..+..+++|++|+|++|... .+| .+..+++|++|++++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence            57889999999988888765 788899999999988888888888999999999988766 555 588888999999998


Q ss_pred             CCCchhhhhhccC---------CCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCcccccccCCCcCEEeccCCC
Q 036772          124 CASLIEIHSSIQH---------LNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETA  193 (583)
Q Consensus       124 ~~~l~~~~~~i~~---------l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~  193 (583)
                      |.....+|..++.         +++|+.|++++| .++.+|..+ .+++|++|++++                     |.
T Consensus       160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~---------------------N~  217 (328)
T 4fcg_A          160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRN---------------------SP  217 (328)
T ss_dssp             ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEES---------------------SC
T ss_pred             CCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccC---------------------CC
Confidence            8888777776654         677777777664 445666554 455555555544                     56


Q ss_pred             CccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEE
Q 036772          194 IEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMS  273 (583)
Q Consensus       194 i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~  273 (583)
                      ++.+|..++.+++|++|++++|.....+|..+..+++|++|++++|...+.+|..+..+++|+.|++++|.+..      
T Consensus       218 l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~------  291 (328)
T 4fcg_A          218 LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS------  291 (328)
T ss_dssp             CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC------
T ss_pred             CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh------
Confidence            66777778888899999999888888888888888999999999988888888888888887777776665433      


Q ss_pred             eccCCCcccCccCCCCCCCCEEEccCCCCccc
Q 036772          274 LVDCGITELPESLGRSPSLKFLNLAENDFEKI  305 (583)
Q Consensus       274 L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l  305 (583)
                             .+|..++.+++|+.+++..+.+..+
T Consensus       292 -------~iP~~l~~L~~L~~l~l~~~~~~~l  316 (328)
T 4fcg_A          292 -------RLPSLIAQLPANCIILVPPHLQAQL  316 (328)
T ss_dssp             -------CCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred             -------hccHHHhhccCceEEeCCHHHHHHH
Confidence                   3888888899999988887655544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=1.6e-24  Score=220.15  Aligned_cols=247  Identities=20%  Similarity=0.217  Sum_probs=178.8

Q ss_pred             CCceEEEccCCChh---hhcccccCCCCccEEeccC-CCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCE
Q 036772           68 EHLVSLEMPHSNIE---QLWNGVQNLAALKRLNLSY-CKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVF  142 (583)
Q Consensus        68 ~~L~~L~L~~~~l~---~l~~~~~~l~~L~~L~Ls~-~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~  142 (583)
                      .++++|+++++.+.   .+|..+.++++|++|+|++ |.....+| .++.+++|++|++++|.....+|..++.+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            57888888888887   4777788888888888884 66665666 4788888888888887766677888888888888


Q ss_pred             EEccCCCCCCcCCCcC-CCCCccEEEecCCCCcccccccC---C-CcCEEeccCCCCc-cccccccCCCCccEEeeeCCC
Q 036772          143 LNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEIS---C-NIENLDLSETAIE-ELPSSIGNLSRLVRLDLTNCS  216 (583)
Q Consensus       143 L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~~~---~-~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~  216 (583)
                      |++++|.....+|..+ .+++|++|++++|.....+|..+   . +|+.|++++|.++ .+|..++.++ |+.|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            8888865444677666 77888888888765443444332   2 5667777777776 5666677776 8888887777


Q ss_pred             CCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEE
Q 036772          217 RLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLN  296 (583)
Q Consensus       217 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~  296 (583)
                      .....|..+..+++|++|++++|......|. +..+++|++|++++|.+..             .+|..+..+++|+.|+
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-------------~~p~~l~~l~~L~~L~  274 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG-------------TLPQGLTQLKFLHSLN  274 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE-------------CCCGGGGGCTTCCEEE
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC-------------cCChHHhcCcCCCEEE
Confidence            6666777777777888888877765544444 5556666555555554432             3788888889999999


Q ss_pred             ccCCCCc-ccChhhhccCcccccccccccccccCC
Q 036772          297 LAENDFE-KIPSSIKQLSNLLFLTLQNCKRLQSLP  330 (583)
Q Consensus       297 Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp  330 (583)
                      +++|.++ .+|.. +.+++|+.|++++|+.+...|
T Consensus       275 Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          275 VSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred             CcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence            9999888 66654 788889999998887665433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.90  E-value=2.1e-22  Score=222.06  Aligned_cols=249  Identities=20%  Similarity=0.223  Sum_probs=127.2

Q ss_pred             CccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCC
Q 036772           47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCAS  126 (583)
Q Consensus        47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~  126 (583)
                      +++.|+++++.++.+|..+. ++|++|++++|+++.+|.   .+++|++|+|++|. ++.+|.  .+++|++|++++|..
T Consensus        41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~l  113 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSIFSNPL  113 (622)
T ss_dssp             CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEECSCCC
T ss_pred             CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEECcCCcC
Confidence            34555555555555544332 445555555555554444   34445555555543 223333  344555555554432


Q ss_pred             chhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCC
Q 036772          127 LIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSR  206 (583)
Q Consensus       127 l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~  206 (583)
                       ..+|.   .+++|+.|++++| .++.+|..  +++|++|++++| .+..+|..+.+|+.|++++|.++.+|   ..+++
T Consensus       114 -~~l~~---~l~~L~~L~L~~N-~l~~lp~~--l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~~  182 (622)
T 3g06_A          114 -THLPA---LPSGLCKLWIFGN-QLTSLPVL--PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLP---MLPSG  182 (622)
T ss_dssp             -CCCCC---CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCCTT
T ss_pred             -CCCCC---CCCCcCEEECCCC-CCCcCCCC--CCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCc---ccCCC
Confidence             22222   3444555555442 34444432  345555555553 33344444445555555555555554   23445


Q ss_pred             ccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcccc------CccEEEeccCCCc
Q 036772          207 LVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ------NLVDMSLVDCGIT  280 (583)
Q Consensus       207 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~------~L~~L~L~~~~l~  280 (583)
                      |+.|++++|... .+|..   +++|+.|++++|. +..+|..   +++|+.|++++|.+..      .|+.|++++|.++
T Consensus       183 L~~L~Ls~N~l~-~l~~~---~~~L~~L~L~~N~-l~~l~~~---~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~  254 (622)
T 3g06_A          183 LQELSVSDNQLA-SLPTL---PSELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT  254 (622)
T ss_dssp             CCEEECCSSCCS-CCCCC---CTTCCEEECCSSC-CSSCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             CcEEECCCCCCC-CCCCc---cchhhEEECcCCc-ccccCCC---CCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCC
Confidence            555555554332 23321   2445555555443 2233321   2445555555544432      2566666666666


Q ss_pred             ccCccCCCCCCCCEEEccCCCCcccChhhhccCccccccccccc
Q 036772          281 ELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCK  324 (583)
Q Consensus       281 ~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~  324 (583)
                      .+|.   .+++|+.|+|++|.++.+|..+..+++|+.|+|++|+
T Consensus       255 ~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          255 SLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             cCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCC
Confidence            6766   5677888888888888888777788888888887774

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=1.8e-23  Score=216.09  Aligned_cols=261  Identities=20%  Similarity=0.192  Sum_probs=186.3

Q ss_pred             CccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCC
Q 036772           47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGC  124 (583)
Q Consensus        47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~  124 (583)
                      .....+.+++.++.+|..+. ++|++|++++|.++.++. .+.++++|++|+|++|......+ .+..+++|++|++++|
T Consensus        32 ~~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (353)
T 2z80_A           32 RNGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN  110 (353)
T ss_dssp             TTSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC
Confidence            45568889999999998654 589999999999998876 68999999999999997665555 4899999999999998


Q ss_pred             CCchhhhhhccCCCCCCEEEccCCCCCCcCCC--cC-CCCCccEEEecCCCCcccccc----cCCCcCEEeccCCCCccc
Q 036772          125 ASLIEIHSSIQHLNKLVFLNLGRCISLKSLPT--GI-NLDSLKVLYLGGCSNLKRFLE----ISCNIENLDLSETAIEEL  197 (583)
Q Consensus       125 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~L~~c~~l~~~~~----~~~~L~~L~L~~~~i~~l  197 (583)
                      ......+..++.+++|++|++++| .++.+|.  .+ .+++|++|++++|..+..++.    ...+|++|++++|.++.+
T Consensus       111 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  189 (353)
T 2z80_A          111 YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY  189 (353)
T ss_dssp             CCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred             cCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence            755444445899999999999984 6777877  44 799999999999865555432    234566677777777655


Q ss_pred             -cccccCCCCccEEeeeCCCCCccccc-cccCCCCCcEEEccCCCCCCccccccC---CCCcccEEEccCCccccCccEE
Q 036772          198 -PSSIGNLSRLVRLDLTNCSRLKSVSN-SLCNLKSLQYLFLSGCLKLEKLPEEIG---NLESLKIMLANETAISQNLVDM  272 (583)
Q Consensus       198 -p~~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~l~---~l~~L~~L~l~~~~i~~~L~~L  272 (583)
                       |..++.+++|++|++++|.. ..+|. .+..+++|++|++++|......+..+.   ....              ++.+
T Consensus       190 ~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~--------------l~~l  254 (353)
T 2z80_A          190 EPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL--------------IKKF  254 (353)
T ss_dssp             CTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCC--------------CCEE
T ss_pred             CHHHHhccccCCeecCCCCcc-ccchhhhhhhcccccEEECCCCccccccccccccccccch--------------hhcc
Confidence             55677777777777777654 33333 233466777777777654433222221   1222              3334


Q ss_pred             EeccCCCc-----ccCccCCCCCCCCEEEccCCCCcccChhh-hccCccccccccccc
Q 036772          273 SLVDCGIT-----ELPESLGRSPSLKFLNLAENDFEKIPSSI-KQLSNLLFLTLQNCK  324 (583)
Q Consensus       273 ~L~~~~l~-----~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i-~~l~~L~~L~L~~c~  324 (583)
                      +++++.+.     .+|..+..+++|+.|++++|.++.+|..+ +.+++|+.|++++|+
T Consensus       255 ~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          255 TFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             EEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCC
Confidence            44444333     36777778888888888888888888764 778888888888773

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=2.1e-23  Score=211.96  Aligned_cols=245  Identities=17%  Similarity=0.191  Sum_probs=199.7

Q ss_pred             CCccEEeccCCCCCC--CCC-CCCCCCCcCEEeeeC-CCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccE
Q 036772           91 AALKRLNLSYCKQLS--RIP-DLSLALNLEWLDLVG-CASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKV  165 (583)
Q Consensus        91 ~~L~~L~Ls~~~~l~--~~p-~l~~l~~L~~L~L~~-~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~  165 (583)
                      .+++.|+|++|....  .+| .+..+++|++|++++ +.....+|..++.+++|++|++++|.....+|..+ .+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            689999999998776  566 589999999999996 66666889999999999999999965555788877 8999999


Q ss_pred             EEecCCCCcccccc---cCCCcCEEeccCCCCc-cccccccCCC-CccEEeeeCCCCCccccccccCCCCCcEEEccCCC
Q 036772          166 LYLGGCSNLKRFLE---ISCNIENLDLSETAIE-ELPSSIGNLS-RLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCL  240 (583)
Q Consensus       166 L~L~~c~~l~~~~~---~~~~L~~L~L~~~~i~-~lp~~i~~l~-~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~  240 (583)
                      |++++|.....+|.   .+++|++|++++|.++ .+|..++.++ +|+.|++++|.....+|..+..++ |++|++++|.
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            99999764434443   4578999999999998 7888888888 999999999887778888888887 9999999988


Q ss_pred             CCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCc-ccChhhhccCcccccc
Q 036772          241 KLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFE-KIPSSIKQLSNLLFLT  319 (583)
Q Consensus       241 ~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~~L~~L~  319 (583)
                      ..+..|..+..+++|+.|++++|.+..              .+..+..+++|++|++++|.++ .+|..+..+++|+.|+
T Consensus       209 l~~~~~~~~~~l~~L~~L~L~~N~l~~--------------~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  274 (313)
T 1ogq_A          209 LEGDASVLFGSDKNTQKIHLAKNSLAF--------------DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN  274 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECC--------------BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE
T ss_pred             ccCcCCHHHhcCCCCCEEECCCCceee--------------ecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEE
Confidence            777788888888888888777776543              4445788999999999999998 8899999999999999


Q ss_pred             cccccccccCCCCCCCCeeeeeCCcCcccccCcccccccccccce
Q 036772          320 LQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSELWQ  364 (583)
Q Consensus       320 L~~c~~L~~lp~lp~~~~l~~~~c~sL~~l~~l~~l~~~~~~~~~  364 (583)
                      +++|+--..+|.              ...++.++.+.+.+|+...
T Consensus       275 Ls~N~l~~~ip~--------------~~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          275 VSFNNLCGEIPQ--------------GGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             CCSSEEEEECCC--------------STTGGGSCGGGTCSSSEEE
T ss_pred             CcCCcccccCCC--------------CccccccChHHhcCCCCcc
Confidence            999964446653              2445566667666665443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.89  E-value=7.1e-22  Score=217.78  Aligned_cols=262  Identities=23%  Similarity=0.259  Sum_probs=213.0

Q ss_pred             CCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccE
Q 036772           16 RRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKR   95 (583)
Q Consensus        16 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~   95 (583)
                      .+++.|+++++.      ...+|..+.   ++|++|++++|.++.+|.  .+++|++|++++|+++.+|.   .+++|++
T Consensus        40 ~~l~~L~ls~n~------L~~lp~~l~---~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~  105 (622)
T 3g06_A           40 NGNAVLNVGESG------LTTLPDCLP---AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLE  105 (622)
T ss_dssp             HCCCEEECCSSC------CSCCCSCCC---TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCE
T ss_pred             CCCcEEEecCCC------cCccChhhC---CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCE
Confidence            368899998884      346776553   689999999999999998  67899999999999999887   7899999


Q ss_pred             EeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcc
Q 036772           96 LNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLK  175 (583)
Q Consensus        96 L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~  175 (583)
                      |+|++|.. ..+|.  .+++|+.|++++|. +..+|..   +++|++|++++| .++.+|.  .+++|+.|++++| .+.
T Consensus       106 L~Ls~N~l-~~l~~--~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N-~l~~l~~--~~~~L~~L~L~~N-~l~  174 (622)
T 3g06_A          106 LSIFSNPL-THLPA--LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDN-QLASLPA--LPSELCKLWAYNN-QLT  174 (622)
T ss_dssp             EEECSCCC-CCCCC--CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCS
T ss_pred             EECcCCcC-CCCCC--CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCC-cCCCcCC--ccCCCCEEECCCC-CCC
Confidence            99999954 44555  67899999999976 4456653   589999999985 6777775  4678999999985 566


Q ss_pred             cccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcc
Q 036772          176 RFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESL  255 (583)
Q Consensus       176 ~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L  255 (583)
                      .+|..+.+|+.|++++|.++.+|..   +++|+.|++++|... .+|..   +++|++|++++|. +..+|   ..+++|
T Consensus       175 ~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~-L~~lp---~~l~~L  243 (622)
T 3g06_A          175 SLPMLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNR-LTSLP---VLPSEL  243 (622)
T ss_dssp             CCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSC-CSCCC---CCCTTC
T ss_pred             CCcccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCCC---CCCCCEEEccCCc-cCcCC---CCCCcC
Confidence            6787788999999999999998863   478999999987654 55543   4789999999974 44566   456889


Q ss_pred             cEEEccCCcccc------CccEEEeccCCCcccCccCCCCCCCCEEEccCCCCc-ccChhhhccC
Q 036772          256 KIMLANETAISQ------NLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFE-KIPSSIKQLS  313 (583)
Q Consensus       256 ~~L~l~~~~i~~------~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~l~  313 (583)
                      +.|++++|.+..      .|+.|++++|.++.+|..+..+++|+.|+|++|.++ ..|..+..++
T Consensus       244 ~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          244 KELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             CEEECCSSCCSCCCCCCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             cEEECCCCCCCcCCcccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            999999998875      399999999999999999999999999999999998 4455454443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=8.7e-22  Score=210.43  Aligned_cols=241  Identities=21%  Similarity=0.208  Sum_probs=181.7

Q ss_pred             CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeC
Q 036772           46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVG  123 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~  123 (583)
                      ...+.++.++..++.+|..+ +++|++|++++|+++.++ ..+.++++|+.|+|++|......+ .|..+++|++|+|++
T Consensus        54 ~~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~  132 (452)
T 3zyi_A           54 NQFSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD  132 (452)
T ss_dssp             SSSCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCCcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence            35677888888899998754 468999999999998774 558899999999999997665544 488899999999999


Q ss_pred             CCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCCCcccccc----cCCCcCEEeccCCCCccc
Q 036772          124 CASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLE----ISCNIENLDLSETAIEEL  197 (583)
Q Consensus       124 ~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~~----~~~~L~~L~L~~~~i~~l  197 (583)
                      |......+..++.+++|++|+|++| .++.+|...  .+++|++|++++|..+..++.    .+.+|+.|++++|.++.+
T Consensus       133 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          133 NWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            8755444456888999999999884 566776643  799999999999888776654    346788888888888877


Q ss_pred             cccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccC
Q 036772          198 PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDC  277 (583)
Q Consensus       198 p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~  277 (583)
                      |. +..+++|+.|++++|......|..+.++++|++|++++|......|..+..+++|+.|++++|.+.           
T Consensus       212 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------  279 (452)
T 3zyi_A          212 PN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-----------  279 (452)
T ss_dssp             CC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-----------
T ss_pred             cc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-----------
Confidence            64 777888888888887776666777888888888888877666555666666666666555555443           


Q ss_pred             CCcccC-ccCCCCCCCCEEEccCCCCc
Q 036772          278 GITELP-ESLGRSPSLKFLNLAENDFE  303 (583)
Q Consensus       278 ~l~~lp-~~l~~l~~L~~L~Ls~n~l~  303 (583)
                         .+| ..+..+++|+.|+|++|.+.
T Consensus       280 ---~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          280 ---SLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             ---CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             ---ccChHHhccccCCCEEEccCCCcC
Confidence               344 34566777777777777654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.89  E-value=7.3e-22  Score=219.45  Aligned_cols=131  Identities=24%  Similarity=0.181  Sum_probs=108.1

Q ss_pred             ccccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCCCC-CCCCCCCc
Q 036772           41 LESFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSRIP-DLSLALNL  116 (583)
Q Consensus        41 l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L  116 (583)
                      +..+|.++++|++++|.++.+|+. | .+++|++|+|++|+++.++.+ |.++++|++|+|++|+.....+ .|.++++|
T Consensus        47 P~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L  126 (635)
T 4g8a_A           47 PDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  126 (635)
T ss_dssp             CSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred             CCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence            344678999999999999999864 5 899999999999999999765 8999999999999997544333 38999999


Q ss_pred             CEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCc--CCCcC-CCCCccEEEecCCC
Q 036772          117 EWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKS--LPTGI-NLDSLKVLYLGGCS  172 (583)
Q Consensus       117 ~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~--lp~~~-~l~~L~~L~L~~c~  172 (583)
                      ++|+|++|......+..++++++|++|++++| .++.  +|..+ .+++|++|++++|.
T Consensus       127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          127 QKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcc
Confidence            99999998755444457899999999999995 4443  45555 78999999998864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.88  E-value=1.1e-21  Score=208.91  Aligned_cols=241  Identities=22%  Similarity=0.214  Sum_probs=168.0

Q ss_pred             CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeC
Q 036772           46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVG  123 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~  123 (583)
                      ...+.++.++..++.+|..+. ++++.|++++|+++.++ ..+.++++|++|+|++|......+ .|..+++|++|+|++
T Consensus        43 ~~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           43 NQFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             TTSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CCCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            356788888888888887553 68899999999988776 458889999999999986554443 488889999999998


Q ss_pred             CCCchhhhhhccCCCCCCEEEccCCCCCCcCCCc-C-CCCCccEEEecCCCCcccccc----cCCCcCEEeccCCCCccc
Q 036772          124 CASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTG-I-NLDSLKVLYLGGCSNLKRFLE----ISCNIENLDLSETAIEEL  197 (583)
Q Consensus       124 ~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~~~~----~~~~L~~L~L~~~~i~~l  197 (583)
                      |......+..+..+++|+.|+|++| .++.+|.. + .+++|++|++++|..+..++.    .+.+|+.|++++|.++.+
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  200 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI  200 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred             CcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence            7654433456888999999999884 56666653 3 788999999988777766553    245677777777777777


Q ss_pred             cccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccC
Q 036772          198 PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDC  277 (583)
Q Consensus       198 p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~  277 (583)
                      |. +..+++|+.|++++|......|..+.++++|++|++++|......+..+..+++|+.|++++|.+.           
T Consensus       201 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-----------  268 (440)
T 3zyj_A          201 PN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-----------  268 (440)
T ss_dssp             CC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-----------
T ss_pred             cc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-----------
Confidence            64 667777777777777665555666677777777777766555444555555555555444444333           


Q ss_pred             CCcccC-ccCCCCCCCCEEEccCCCCc
Q 036772          278 GITELP-ESLGRSPSLKFLNLAENDFE  303 (583)
Q Consensus       278 ~l~~lp-~~l~~l~~L~~L~Ls~n~l~  303 (583)
                         .+| ..+..+++|+.|+|++|.+.
T Consensus       269 ---~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          269 ---LLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             ---CCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ---ccChhHhccccCCCEEEcCCCCcc
Confidence               233 33455666666666666543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.88  E-value=5e-22  Score=200.88  Aligned_cols=239  Identities=25%  Similarity=0.299  Sum_probs=156.4

Q ss_pred             cEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCC---CCCCCCCCCcCEEeeeCC
Q 036772           49 RYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSR---IPDLSLALNLEWLDLVGC  124 (583)
Q Consensus        49 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~---~p~l~~l~~L~~L~L~~~  124 (583)
                      +.++++++.++.+|..+ +++|++|++++|.++.++.. +.++++|++|+|++|.....   .+.+..+++|++|++++|
T Consensus        10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             CEEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence            45566666666666543 24666666666666666654 46666677777766654322   123445666777777665


Q ss_pred             CCchhhhhhccCCCCCCEEEccCCCCCCcCCC--cC-CCCCccEEEecCCCCcccccc---cCCCcCEEeccCCCCcc--
Q 036772          125 ASLIEIHSSIQHLNKLVFLNLGRCISLKSLPT--GI-NLDSLKVLYLGGCSNLKRFLE---ISCNIENLDLSETAIEE--  196 (583)
Q Consensus       125 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~--~~-~l~~L~~L~L~~c~~l~~~~~---~~~~L~~L~L~~~~i~~--  196 (583)
                      . +..++..+..+++|++|++++| .++.++.  .+ .+++|++|++++|......+.   ...+|+.|++++|.++.  
T Consensus        89 ~-i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           89 G-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             S-EEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             c-cccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            4 3345555666777777777663 4444443  23 567777777776643333222   23567777777777764  


Q ss_pred             ccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEecc
Q 036772          197 LPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVD  276 (583)
Q Consensus       197 lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~  276 (583)
                      +|..+..+++|++|++++|......|..+..+++|++|++++|......+..+..+++|+.|++++|.+...        
T Consensus       167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------  238 (306)
T 2z66_A          167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS--------  238 (306)
T ss_dssp             ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC--------
T ss_pred             chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc--------
Confidence            677788888888888888877666677888888888888888776555555677777777776666655431        


Q ss_pred             CCCcccCccCCCCC-CCCEEEccCCCCc
Q 036772          277 CGITELPESLGRSP-SLKFLNLAENDFE  303 (583)
Q Consensus       277 ~~l~~lp~~l~~l~-~L~~L~Ls~n~l~  303 (583)
                           .|..+..++ +|+.|++++|.++
T Consensus       239 -----~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          239 -----KKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             -----SSSSCCCCCTTCCEEECTTCCEE
T ss_pred             -----CHHHHHhhhccCCEEEccCCCee
Confidence                 456677774 8999999999876

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.88  E-value=1.4e-22  Score=206.18  Aligned_cols=233  Identities=19%  Similarity=0.136  Sum_probs=125.0

Q ss_pred             CCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEE
Q 036772           89 NLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLY  167 (583)
Q Consensus        89 ~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~  167 (583)
                      .+++|+.|+|++|......| .+..+++|++|+|++|......+  +..+++|++|++++| .++.++   ..++|++|+
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~---~~~~L~~L~  105 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL---VGPSIETLH  105 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEE---ECTTCCEEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-cccccc---CCCCcCEEE
Confidence            34444444444443333222 24444444444444443322211  444444555555442 233322   124455555


Q ss_pred             ecCCCCcccccccCCCcCEEeccCCCCccccc-cccCCCCccEEeeeCCCCCccccccc-cCCCCCcEEEccCCCCCCcc
Q 036772          168 LGGCSNLKRFLEISCNIENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVSNSL-CNLKSLQYLFLSGCLKLEKL  245 (583)
Q Consensus       168 L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~l~~c~~l~~l  245 (583)
                      +++|..-...+..+.+|+.|++++|.++.+++ .++.+++|++|++++|......+..+ ..+++|++|++++|... .+
T Consensus       106 l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~  184 (317)
T 3o53_A          106 AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV  184 (317)
T ss_dssp             CCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EE
T ss_pred             CCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-cc
Confidence            55443333333334445555555555554432 34445555555555554443333333 24455555555554322 22


Q ss_pred             ccccCCCCcccEEEccCCccccC---------ccEEEeccCCCcccCccCCCCCCCCEEEccCCCCc--ccChhhhccCc
Q 036772          246 PEEIGNLESLKIMLANETAISQN---------LVDMSLVDCGITELPESLGRSPSLKFLNLAENDFE--KIPSSIKQLSN  314 (583)
Q Consensus       246 p~~l~~l~~L~~L~l~~~~i~~~---------L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~--~lp~~i~~l~~  314 (583)
                      +. ...+++|+.|++++|.+...         |+.|++++|.++.+|..+..+++|+.|++++|.+.  .+|..+..+++
T Consensus       185 ~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~  263 (317)
T 3o53_A          185 KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR  263 (317)
T ss_dssp             EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred             cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence            21 12345555555555544321         56666666667778888999999999999999988  77888899999


Q ss_pred             ccccccccccccccC
Q 036772          315 LLFLTLQNCKRLQSL  329 (583)
Q Consensus       315 L~~L~L~~c~~L~~l  329 (583)
                      |+.|++.+++.++..
T Consensus       264 L~~l~l~~~~~l~~~  278 (317)
T 3o53_A          264 VQTVAKQTVKKLTGQ  278 (317)
T ss_dssp             HHHHHHHHHHHHHSS
T ss_pred             ceEEECCCchhccCC
Confidence            999999988776654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.87  E-value=2.2e-24  Score=230.85  Aligned_cols=302  Identities=19%  Similarity=0.204  Sum_probs=193.1

Q ss_pred             CCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCC-----CCCCCC-CCCCceEEEccCCChhhh-c-ccc
Q 036772           16 RRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLK-----SLPSKN-IPEHLVSLEMPHSNIEQL-W-NGV   87 (583)
Q Consensus        16 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~-----~lp~~~-~~~~L~~L~L~~~~l~~l-~-~~~   87 (583)
                      ++|+.|+++++.+    ........+..+ ++|++|++++|.+.     .++..+ .+++|++|++++|.+... + .-.
T Consensus         3 ~~l~~L~Ls~~~l----~~~~~~~~~~~~-~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~   77 (461)
T 1z7x_W            3 LDIQSLDIQCEEL----SDARWAELLPLL-QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL   77 (461)
T ss_dssp             EEEEEEEEESCCC----CHHHHHHHHHHH-TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             ccceehhhhhccc----CchhHHHHHhhc-CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHH
Confidence            4577888877643    222222335555 47888888888876     334433 567788888888877642 1 112


Q ss_pred             cCCC----CccEEeccCCCCCC----CCC-CCCCCCCcCEEeeeCCCCchhhhhhc-----cCCCCCCEEEccCCCCCCc
Q 036772           88 QNLA----ALKRLNLSYCKQLS----RIP-DLSLALNLEWLDLVGCASLIEIHSSI-----QHLNKLVFLNLGRCISLKS  153 (583)
Q Consensus        88 ~~l~----~L~~L~Ls~~~~l~----~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i-----~~l~~L~~L~L~~c~~l~~  153 (583)
                      ..++    +|++|+|++|....    .++ .+..+++|++|++++|......+..+     ...++|++|++++|. ++.
T Consensus        78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~  156 (461)
T 1z7x_W           78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSA  156 (461)
T ss_dssp             HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBG
T ss_pred             HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCH
Confidence            2333    68888888886543    223 46777888888888877543333322     235678888888763 332


Q ss_pred             -----CCCcC-CCCCccEEEecCCCCccc----ccc----cCCCcCEEeccCCCCcc-----ccccccCCCCccEEeeeC
Q 036772          154 -----LPTGI-NLDSLKVLYLGGCSNLKR----FLE----ISCNIENLDLSETAIEE-----LPSSIGNLSRLVRLDLTN  214 (583)
Q Consensus       154 -----lp~~~-~l~~L~~L~L~~c~~l~~----~~~----~~~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~  214 (583)
                           ++..+ .+++|++|++++|..-..    +..    ..++|+.|++++|.++.     ++..+..+++|++|++++
T Consensus       157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~  236 (461)
T 1z7x_W          157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS  236 (461)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence                 23323 567888888888763221    111    23478888888888775     566677788888888888


Q ss_pred             CCCCcc----c-cccccCCCCCcEEEccCCCCCCc----cccccCCCCcccEEEccCCccc---------------cCcc
Q 036772          215 CSRLKS----V-SNSLCNLKSLQYLFLSGCLKLEK----LPEEIGNLESLKIMLANETAIS---------------QNLV  270 (583)
Q Consensus       215 ~~~l~~----l-p~~l~~l~~L~~L~l~~c~~l~~----lp~~l~~l~~L~~L~l~~~~i~---------------~~L~  270 (583)
                      |.....    + +.....+++|++|++++|.....    ++..+..+++|+.|++++|.+.               ..|+
T Consensus       237 n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~  316 (461)
T 1z7x_W          237 NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLE  316 (461)
T ss_dssp             SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCC
T ss_pred             CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccce
Confidence            754332    1 22233577888888888754432    5666777788888888887764               2478


Q ss_pred             EEEeccCCCcc-----cCccCCCCCCCCEEEccCCCCccc-Chhhhc-----cCcccccccccc
Q 036772          271 DMSLVDCGITE-----LPESLGRSPSLKFLNLAENDFEKI-PSSIKQ-----LSNLLFLTLQNC  323 (583)
Q Consensus       271 ~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~-----l~~L~~L~L~~c  323 (583)
                      .|++++|.+++     ++..+..+++|++|++++|.++.. +..+..     .++|+.|++++|
T Consensus       317 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  380 (461)
T 1z7x_W          317 SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC  380 (461)
T ss_dssp             EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             eeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence            88888887765     455566778888888888877633 222221     567888888877

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.87  E-value=1.6e-21  Score=195.09  Aligned_cols=215  Identities=21%  Similarity=0.194  Sum_probs=122.6

Q ss_pred             ccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCC
Q 036772           48 LRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCA  125 (583)
Q Consensus        48 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~  125 (583)
                      -+.++.++..++.+|..+ +++|++|++++|.++.++. .+..+++|++|+|++|......| .+..+++|++|++++|.
T Consensus        13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence            356777777777777543 4677777777777777664 46777777777777775544434 46777777777777776


Q ss_pred             Cchhh-hhhccCCCCCCEEEccCCCCCCcC-CCcC-CCCCccEEEecCCCCccccc----ccCCCcCEEeccCCCCcccc
Q 036772          126 SLIEI-HSSIQHLNKLVFLNLGRCISLKSL-PTGI-NLDSLKVLYLGGCSNLKRFL----EISCNIENLDLSETAIEELP  198 (583)
Q Consensus       126 ~l~~~-~~~i~~l~~L~~L~L~~c~~l~~l-p~~~-~l~~L~~L~L~~c~~l~~~~----~~~~~L~~L~L~~~~i~~lp  198 (583)
                      .+..+ +..+..+++|++|++++|. ++.+ |..+ .+++|++|++++|.. ..++    ..+.+|+.|++++|.++.+|
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~  169 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRISSVP  169 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             CccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcc-cccCHhHhccCCCccEEECCCCcccccC
Confidence            44444 5567777777777777743 3334 3334 566666666666432 1111    11234444444445555444


Q ss_pred             cc-ccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcc
Q 036772          199 SS-IGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAI  265 (583)
Q Consensus       199 ~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i  265 (583)
                      .. +..+++|+.|++++|......|..+..+++|++|++++|......+..+..+++|+.|++++|.+
T Consensus       170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            32 45555555555555554444445555555555555555443333333344444444444444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=1.5e-21  Score=197.31  Aligned_cols=234  Identities=20%  Similarity=0.238  Sum_probs=141.2

Q ss_pred             eEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCC-C-CCCCCCcCEEeeeCCCCch--hhhhhccCCCCCCEEEcc
Q 036772           71 VSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP-D-LSLALNLEWLDLVGCASLI--EIHSSIQHLNKLVFLNLG  146 (583)
Q Consensus        71 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~-l~~l~~L~~L~L~~~~~l~--~~~~~i~~l~~L~~L~L~  146 (583)
                      +.++.+++.++.+|.++.  ++|++|+|++|... .+| . +..+++|++|++++|....  ..+..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCcccCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            478999999999998654  79999999999755 555 3 7899999999999987542  235667789999999999


Q ss_pred             CCCCCCcCCCcC-CCCCccEEEecCCCCccccc-----ccCCCcCEEeccCCCCccc-cccccCCCCccEEeeeCCCCCc
Q 036772          147 RCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFL-----EISCNIENLDLSETAIEEL-PSSIGNLSRLVRLDLTNCSRLK  219 (583)
Q Consensus       147 ~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~-----~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~  219 (583)
                      +| .+..+|..+ .+++|++|++++|. +..++     ..+.+|+.|++++|.++.. +..+..+++|++|++++|....
T Consensus        87 ~n-~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A           87 FN-GVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             SC-SEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CC-ccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence            95 566777766 78888888888753 22211     2234555555555555533 2234555555555555554433


Q ss_pred             -cccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccC-ccCCCCCCCCEEEc
Q 036772          220 -SVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNL  297 (583)
Q Consensus       220 -~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L  297 (583)
                       .+|..+..+++|++|++++|......|..+..+++|+.|++++|.+.              +++ ..+..+++|+.|++
T Consensus       165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--------------~~~~~~~~~l~~L~~L~L  230 (306)
T 2z66_A          165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF--------------SLDTFPYKCLNSLQVLDY  230 (306)
T ss_dssp             GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS--------------BCCSGGGTTCTTCCEEEC
T ss_pred             ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC--------------ccChhhccCcccCCEeEC
Confidence             24445555555555555555443333444444444444444333322              232 23445555555555


Q ss_pred             cCCCCcc-cChhhhccC-cccccccccc
Q 036772          298 AENDFEK-IPSSIKQLS-NLLFLTLQNC  323 (583)
Q Consensus       298 s~n~l~~-lp~~i~~l~-~L~~L~L~~c  323 (583)
                      ++|.++. .|..+..++ +|+.|++++|
T Consensus       231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          231 SLNHIMTSKKQELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             TTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred             CCCCCcccCHHHHHhhhccCCEEEccCC
Confidence            5555543 233344442 4555555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.86  E-value=1.2e-20  Score=200.75  Aligned_cols=229  Identities=19%  Similarity=0.177  Sum_probs=194.1

Q ss_pred             eecCCcccccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCC-CC
Q 036772           35 VRHSRCLESFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIP-DL  110 (583)
Q Consensus        35 ~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l  110 (583)
                      ..+|.+   ++.++++|++++|.++.++.. | .+++|++|++++|.++.++ ..+.++++|++|+|++|......+ .+
T Consensus        56 ~~iP~~---~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  132 (440)
T 3zyj_A           56 REVPDG---ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF  132 (440)
T ss_dssp             SSCCSC---CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred             CcCCCC---CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHh
Confidence            345544   457899999999999988754 4 8999999999999999876 458999999999999997654444 48


Q ss_pred             CCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCCCccccccc--CCCcCE
Q 036772          111 SLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEI--SCNIEN  186 (583)
Q Consensus       111 ~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~~~--~~~L~~  186 (583)
                      ..+++|++|+|++|......+..+..+++|+.|++++|+.+..++...  .+++|++|++++| .+..+|..  +.+|+.
T Consensus       133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~  211 (440)
T 3zyj_A          133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDE  211 (440)
T ss_dssp             CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCE
T ss_pred             hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCE
Confidence            999999999999987655445678999999999999999999988754  8999999999997 45566643  458999


Q ss_pred             EeccCCCCccc-cccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcc
Q 036772          187 LDLSETAIEEL-PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAI  265 (583)
Q Consensus       187 L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i  265 (583)
                      |++++|.++.+ |..+..+++|+.|++++|......+..+.++++|++|++++|......+..+..+++|+.|++++|.+
T Consensus       212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            99999999987 56799999999999999988777788899999999999999877666666788999999999999986


Q ss_pred             cc
Q 036772          266 SQ  267 (583)
Q Consensus       266 ~~  267 (583)
                      .-
T Consensus       292 ~C  293 (440)
T 3zyj_A          292 NC  293 (440)
T ss_dssp             EC
T ss_pred             cC
Confidence            53

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.86  E-value=1.3e-20  Score=201.24  Aligned_cols=224  Identities=21%  Similarity=0.182  Sum_probs=190.9

Q ss_pred             ccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCCC-CCCCCCcCE
Q 036772           43 SFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEW  118 (583)
Q Consensus        43 ~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~  118 (583)
                      .+|.+|++|++++|.++.++.. | .+++|++|++++|.++.++ ..+.++++|++|+|++|......+. +..+++|++
T Consensus        72 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  151 (452)
T 3zyi_A           72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE  151 (452)
T ss_dssp             CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred             CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence            3457999999999999988644 4 8999999999999999876 5589999999999999976655444 889999999


Q ss_pred             EeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCCCcccccc--cCCCcCEEeccCCCC
Q 036772          119 LDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLE--ISCNIENLDLSETAI  194 (583)
Q Consensus       119 L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~~--~~~~L~~L~L~~~~i  194 (583)
                      |+|++|......+..+..+++|+.|++++|+.++.++...  .+++|++|++++|. +..+|.  .+.+|+.|++++|.+
T Consensus       152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCCCTTCTTCCEEECTTSCC
T ss_pred             EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-ccccccccccccccEEECcCCcC
Confidence            9999987654444578999999999999999999998754  89999999999974 445553  346899999999999


Q ss_pred             ccc-cccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcccc
Q 036772          195 EEL-PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ  267 (583)
Q Consensus       195 ~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~  267 (583)
                      +.+ |..+..+++|+.|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.+.-
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            987 5679999999999999998887788889999999999999987665555667889999999999998653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.86  E-value=2.8e-21  Score=199.61  Aligned_cols=267  Identities=15%  Similarity=0.140  Sum_probs=204.9

Q ss_pred             CCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChhhhc-ccccCCC
Q 036772           15 MRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQLW-NGVQNLA   91 (583)
Q Consensus        15 m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l~-~~~~~l~   91 (583)
                      +......+.+++      ....+|.++   +++|++|++++|.++.+|. .+ .+++|++|++++|.++.++ ..+.+++
T Consensus        30 C~~~~~c~~~~~------~l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  100 (353)
T 2z80_A           30 CDRNGICKGSSG------SLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG  100 (353)
T ss_dssp             ECTTSEEECCST------TCSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CCCCeEeeCCCC------Ccccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence            344444555554      344566543   4689999999999999987 34 8999999999999999875 4589999


Q ss_pred             CccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCCCchhhhh--hccCCCCCCEEEccCCCCCCcCCC-cC-CCCCccEE
Q 036772           92 ALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCASLIEIHS--SIQHLNKLVFLNLGRCISLKSLPT-GI-NLDSLKVL  166 (583)
Q Consensus        92 ~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~~~--~i~~l~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L  166 (583)
                      +|++|+|++|......+. +..+++|++|++++|... .++.  .++.+++|+.|++++|..++.++. .+ .+++|++|
T Consensus       101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  179 (353)
T 2z80_A          101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL  179 (353)
T ss_dssp             TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred             CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence            999999999976544444 889999999999998644 5555  788999999999999877777754 44 89999999


Q ss_pred             EecCCCCcccccccC---CCcCEEeccCCCCcccccc-ccCCCCccEEeeeCCCCCccccccc---cCCCCCcEEEccCC
Q 036772          167 YLGGCSNLKRFLEIS---CNIENLDLSETAIEELPSS-IGNLSRLVRLDLTNCSRLKSVSNSL---CNLKSLQYLFLSGC  239 (583)
Q Consensus       167 ~L~~c~~l~~~~~~~---~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l---~~l~~L~~L~l~~c  239 (583)
                      ++++|......|..+   .+|++|++++|.++.+|.. +..+++|+.|++++|......+..+   .....++.++++++
T Consensus       180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~  259 (353)
T 2z80_A          180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV  259 (353)
T ss_dssp             EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred             ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence            999986554445444   5788899999999988875 4468999999999988765443333   34667889999887


Q ss_pred             CCCC----ccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCcc-CCCCCCCCEEEccCCCCccc
Q 036772          240 LKLE----KLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPES-LGRSPSLKFLNLAENDFEKI  305 (583)
Q Consensus       240 ~~l~----~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~l  305 (583)
                      ....    .+|+.+..+++|+.|++++|.+              +.+|.. +..+++|++|++++|.+..-
T Consensus       260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l--------------~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          260 KITDESLFQVMKLLNQISGLLELEFSRNQL--------------KSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             BCCHHHHHHHHHHHHTCTTCCEEECCSSCC--------------CCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             cccCcchhhhHHHHhcccCCCEEECCCCCC--------------CccCHHHHhcCCCCCEEEeeCCCccCc
Confidence            6543    4677778888877766666554              458876 48999999999999998743

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.86  E-value=2.3e-23  Score=222.93  Aligned_cols=308  Identities=17%  Similarity=0.155  Sum_probs=229.3

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCC--CCC-CCC----CceEEEccCCChh-----
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLP--SKN-IPE----HLVSLEMPHSNIE-----   81 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp--~~~-~~~----~L~~L~L~~~~l~-----   81 (583)
                      .+++|+.|++++|.+ .......++..+..+ ++|++|++++|.+....  ..+ .++    +|++|++++|.+.     
T Consensus        26 ~~~~L~~L~L~~~~l-~~~~~~~l~~~l~~~-~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  103 (461)
T 1z7x_W           26 LLQQCQVVRLDDCGL-TEARCKDISSALRVN-PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  103 (461)
T ss_dssp             HHTTCSEEEEESSCC-CHHHHHHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hcCCccEEEccCCCC-CHHHHHHHHHHHHhC-CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence            678999999999864 111112456677777 58999999999875421  111 223    7999999999988     


Q ss_pred             hhcccccCCCCccEEeccCCCCCCCCC-C-----CCCCCCcCEEeeeCCCCch----hhhhhccCCCCCCEEEccCCCCC
Q 036772           82 QLWNGVQNLAALKRLNLSYCKQLSRIP-D-----LSLALNLEWLDLVGCASLI----EIHSSIQHLNKLVFLNLGRCISL  151 (583)
Q Consensus        82 ~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~-----l~~l~~L~~L~L~~~~~l~----~~~~~i~~l~~L~~L~L~~c~~l  151 (583)
                      .++..+..+++|++|+|++|......+ .     ....++|++|++++|....    .++..+..+++|+.|++++|. +
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i  182 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-I  182 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-C
T ss_pred             HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-c
Confidence            467779999999999999997543211 1     2345689999999997665    346677889999999999965 4


Q ss_pred             CcCC-----CcC--CCCCccEEEecCCCCccc----ccc---cCCCcCEEeccCCCCccc------cccccCCCCccEEe
Q 036772          152 KSLP-----TGI--NLDSLKVLYLGGCSNLKR----FLE---ISCNIENLDLSETAIEEL------PSSIGNLSRLVRLD  211 (583)
Q Consensus       152 ~~lp-----~~~--~l~~L~~L~L~~c~~l~~----~~~---~~~~L~~L~L~~~~i~~l------p~~i~~l~~L~~L~  211 (583)
                      +...     ..+  ..++|++|++++|..-..    ++.   ..++|++|++++|.++..      +.....+++|++|+
T Consensus       183 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~  262 (461)
T 1z7x_W          183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLW  262 (461)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             chHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEE
Confidence            4321     111  266999999999854321    333   457999999999988753      22234689999999


Q ss_pred             eeCCCCCcc----ccccccCCCCCcEEEccCCCCCCccccccC-----CCCcccEEEccCCcccc--------------C
Q 036772          212 LTNCSRLKS----VSNSLCNLKSLQYLFLSGCLKLEKLPEEIG-----NLESLKIMLANETAISQ--------------N  268 (583)
Q Consensus       212 L~~~~~l~~----lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~-----~l~~L~~L~l~~~~i~~--------------~  268 (583)
                      +++|.....    ++..+.++++|++|++++|......+..+.     ..++|+.|++++|.+..              .
T Consensus       263 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  342 (461)
T 1z7x_W          263 IWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF  342 (461)
T ss_dssp             CTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS
T ss_pred             CcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCC
Confidence            999976543    677788899999999999865433222222     23699999999998763              4


Q ss_pred             ccEEEeccCCCccc-C----ccCC-CCCCCCEEEccCCCCc-----ccChhhhccCccccccccccc
Q 036772          269 LVDMSLVDCGITEL-P----ESLG-RSPSLKFLNLAENDFE-----KIPSSIKQLSNLLFLTLQNCK  324 (583)
Q Consensus       269 L~~L~L~~~~l~~l-p----~~l~-~l~~L~~L~Ls~n~l~-----~lp~~i~~l~~L~~L~L~~c~  324 (583)
                      |+.|++++|.+.+. +    ..+. ..++|++|++++|.++     .+|..+..+++|+.|++++|+
T Consensus       343 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             ccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            99999999998872 2    2232 2789999999999998     688889999999999999983

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.85  E-value=4.1e-20  Score=184.90  Aligned_cols=218  Identities=23%  Similarity=0.277  Sum_probs=140.8

Q ss_pred             ceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCC
Q 036772           70 LVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRC  148 (583)
Q Consensus        70 L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c  148 (583)
                      -++++.+++.++.+|.++  .++|++|++++|......+ .+..+++|++|++++|......+..++.+++|++|++++|
T Consensus        13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            368899999999998755  5799999999997655444 4888999999999998765555778899999999999997


Q ss_pred             CCCCcC-CCcC-CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccc-cccccCCCCccEEeeeCCCCCccccccc
Q 036772          149 ISLKSL-PTGI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEEL-PSSIGNLSRLVRLDLTNCSRLKSVSNSL  225 (583)
Q Consensus       149 ~~l~~l-p~~~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l  225 (583)
                      ..++.+ |..+ .+++|++|++++|.                     ++.+ |..+..+++|++|++++|......+..+
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~---------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  149 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCG---------------------LQELGPGLFRGLAALQYLYLQDNALQALPDDTF  149 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSC---------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCc---------------------CCEECHhHhhCCcCCCEEECCCCcccccCHhHh
Confidence            667777 4444 67778887777753                     3333 2334555555555555554443333445


Q ss_pred             cCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCccc
Q 036772          226 CNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKI  305 (583)
Q Consensus       226 ~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l  305 (583)
                      ..+++|++|++++|......+..+..+++|+.|++++|.+...             .|..+..+++|+.|++++|.++.+
T Consensus       150 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~  216 (285)
T 1ozn_A          150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV-------------HPHAFRDLGRLMTLYLFANNLSAL  216 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-------------CTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc-------------CHhHccCcccccEeeCCCCcCCcC
Confidence            5555666666655543322223355555555444444433220             245566666666666666666665


Q ss_pred             Ch-hhhccCcccccccccc
Q 036772          306 PS-SIKQLSNLLFLTLQNC  323 (583)
Q Consensus       306 p~-~i~~l~~L~~L~L~~c  323 (583)
                      |. .+..+++|+.|++++|
T Consensus       217 ~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          217 PTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             CHHHHTTCTTCCEEECCSS
T ss_pred             CHHHcccCcccCEEeccCC
Confidence            53 3566666666666665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=9.4e-21  Score=204.11  Aligned_cols=234  Identities=17%  Similarity=0.145  Sum_probs=135.4

Q ss_pred             CCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEcc
Q 036772           68 EHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLG  146 (583)
Q Consensus        68 ~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~  146 (583)
                      ++|++|++++|.+..++ ..+..+++|++|+|++|......| +..+++|++|+|++|.. ..++    ..++|+.|+++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~----~~~~L~~L~L~  107 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-QELL----VGPSIETLHAA  107 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEE-EEEE----ECTTCCEEECC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcC-CCCC----CCCCcCEEECc
Confidence            36777777777766654 346667777777777765443333 66666777777766542 2222    23666666666


Q ss_pred             CCCCCCcCCCcCCCCCccEEEecCCCCccccc---ccCCCcCEEeccCCCCccc-ccccc-CCCCccEEeeeCCCCCccc
Q 036772          147 RCISLKSLPTGINLDSLKVLYLGGCSNLKRFL---EISCNIENLDLSETAIEEL-PSSIG-NLSRLVRLDLTNCSRLKSV  221 (583)
Q Consensus       147 ~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~---~~~~~L~~L~L~~~~i~~l-p~~i~-~l~~L~~L~L~~~~~l~~l  221 (583)
                      +| .+..++.. .+++|++|++++|..-...|   ..+++|+.|++++|.++.+ |..+. .+++|+.|++++|..... 
T Consensus       108 ~N-~l~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-  184 (487)
T 3oja_A          108 NN-NISRVSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-  184 (487)
T ss_dssp             SS-CCCCEEEC-CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred             CC-cCCCCCcc-ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence            64 33333321 34556666666654332222   1234555555555555542 33333 455555555555543322 


Q ss_pred             cccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCC
Q 036772          222 SNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAEND  301 (583)
Q Consensus       222 p~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~  301 (583)
                      |. ...+++|++|++++|... .+|..+..+++|              +.|++++|.++.+|..+..+++|+.|++++|.
T Consensus       185 ~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L--------------~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          185 KG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGV--------------TWISLRNNKLVLIEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             EC-CCCCTTCCEEECCSSCCC-EECGGGGGGTTC--------------SEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred             cc-cccCCCCCEEECCCCCCC-CCCHhHcCCCCc--------------cEEEecCCcCcccchhhccCCCCCEEEcCCCC
Confidence            21 223555555555554332 333334444444              45555555566688888889999999999999


Q ss_pred             Cc--ccChhhhccCccccccccccccc
Q 036772          302 FE--KIPSSIKQLSNLLFLTLQNCKRL  326 (583)
Q Consensus       302 l~--~lp~~i~~l~~L~~L~L~~c~~L  326 (583)
                      +.  .+|..+..++.|+.+++..+..+
T Consensus       249 l~c~~~~~~~~~l~~L~~l~~~~~~~~  275 (487)
T 3oja_A          249 FHCGTLRDFFSKNQRVQTVAKQTVKKL  275 (487)
T ss_dssp             BCHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcCcchHHHHHhCCCCcEEeccccccc
Confidence            87  77788888888888888755443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.83  E-value=5.4e-21  Score=194.45  Aligned_cols=226  Identities=18%  Similarity=0.129  Sum_probs=162.2

Q ss_pred             ccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCC
Q 036772           93 LKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGC  171 (583)
Q Consensus        93 L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c  171 (583)
                      ++.++++.+........ +..+++|++|+|++|......+..++.+++|+.|+|++| .+...+....+++|++|++++|
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLDLESLSTLRTLDLNNN   90 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEEETTCTTCCEEECCSS
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchhhhhcCCCCEEECcCC
Confidence            44445554432222222 445679999999999877766788999999999999995 4554444338999999999996


Q ss_pred             CCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcccccc-C
Q 036772          172 SNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEI-G  250 (583)
Q Consensus       172 ~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l-~  250 (583)
                      . +..++. .++|+.|++++|.++.++..  .+++|+.|++++|......+..+..+++|++|++++|......+..+ .
T Consensus        91 ~-l~~l~~-~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  166 (317)
T 3o53_A           91 Y-VQELLV-GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA  166 (317)
T ss_dssp             E-EEEEEE-CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred             c-cccccC-CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh
Confidence            4 555553 38999999999999988753  47899999999998877777788899999999999987766656655 4


Q ss_pred             CCCcccEEEccCCcccc--------CccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCccccccccc
Q 036772          251 NLESLKIMLANETAISQ--------NLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQN  322 (583)
Q Consensus       251 ~l~~L~~L~l~~~~i~~--------~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~  322 (583)
                      .+++|+.|++++|.+..        .|+.|++++|.++++|..+..+++|+.|++++|.++.+|..+..+++|+.|++++
T Consensus       167 ~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~  246 (317)
T 3o53_A          167 SSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG  246 (317)
T ss_dssp             GTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTT
T ss_pred             ccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccC
Confidence            68888888888887653        2555555555555555555555555555555555555555555555555555555


Q ss_pred             c
Q 036772          323 C  323 (583)
Q Consensus       323 c  323 (583)
                      |
T Consensus       247 N  247 (317)
T 3o53_A          247 N  247 (317)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=2.9e-21  Score=196.05  Aligned_cols=233  Identities=18%  Similarity=0.201  Sum_probs=144.0

Q ss_pred             CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhh--hccccc-------CCCCccEEeccCCCCCCCCCC-C--CCC
Q 036772           46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQ--LWNGVQ-------NLAALKRLNLSYCKQLSRIPD-L--SLA  113 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~--l~~~~~-------~l~~L~~L~Ls~~~~l~~~p~-l--~~l  113 (583)
                      .+|++|+++++.+ .+|..+. ..|++|++++|.+..  ++..+.       ++++|++|+|++|......|. +  ..+
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  120 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG  120 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred             CCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence            4688888888888 7776442 128888999988864  444443       789999999999988777774 4  889


Q ss_pred             CCcCEEeeeCCCCchhhhhhccCC-----CCCCEEEccCCCCCCcCC-CcC-CCCCccEEEecCCCCccc--cc-----c
Q 036772          114 LNLEWLDLVGCASLIEIHSSIQHL-----NKLVFLNLGRCISLKSLP-TGI-NLDSLKVLYLGGCSNLKR--FL-----E  179 (583)
Q Consensus       114 ~~L~~L~L~~~~~l~~~~~~i~~l-----~~L~~L~L~~c~~l~~lp-~~~-~l~~L~~L~L~~c~~l~~--~~-----~  179 (583)
                      ++|++|++++|..... |..++.+     ++|++|++++|. ++.++ ..+ .+++|++|++++|.....  ++     .
T Consensus       121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~  198 (312)
T 1wwl_A          121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL  198 (312)
T ss_dssp             CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred             CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence            9999999999875554 6666655     899999999854 55555 555 788899999888764332  11     2


Q ss_pred             cCCCcCEEeccCCCCccccc---c-ccCCCCccEEeeeCCCCCcccc-ccccCCCCCcEEEccCCCCCCccccccCCCCc
Q 036772          180 ISCNIENLDLSETAIEELPS---S-IGNLSRLVRLDLTNCSRLKSVS-NSLCNLKSLQYLFLSGCLKLEKLPEEIGNLES  254 (583)
Q Consensus       180 ~~~~L~~L~L~~~~i~~lp~---~-i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~  254 (583)
                      .+.+|++|++++|.++.++.   . +..+++|++|++++|......| ..+..+++|++|++++|.              
T Consensus       199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~--------------  264 (312)
T 1wwl_A          199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG--------------  264 (312)
T ss_dssp             SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC--------------
T ss_pred             cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc--------------
Confidence            33455555555555553221   1 2344455555555544333322 222333444444444432              


Q ss_pred             ccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772          255 LKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       255 L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c  323 (583)
                                              ++++|..+.  ++|++|++++|+++.+|. +..+++|+.|+++++
T Consensus       265 ------------------------l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          265 ------------------------LKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGN  306 (312)
T ss_dssp             ------------------------CSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTC
T ss_pred             ------------------------cChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCC
Confidence                                    233444443  555555555555555554 555555555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.82  E-value=9.6e-22  Score=199.56  Aligned_cols=238  Identities=17%  Similarity=0.155  Sum_probs=148.3

Q ss_pred             CCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCCCc-hhhhhhcc-------CCCCCCEEEccCCCCCCcCCCcC-
Q 036772           89 NLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCASL-IEIHSSIQ-------HLNKLVFLNLGRCISLKSLPTGI-  158 (583)
Q Consensus        89 ~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~l-~~~~~~i~-------~l~~L~~L~L~~c~~l~~lp~~~-  158 (583)
                      ..++|+.|++++|..  .+|. +...  |+.|+|++|... ..++..+.       .+++|++|++++|.....+|..+ 
T Consensus        41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            344555556666554  3332 2221  555555554431 12333332       56666666666654433555542 


Q ss_pred             --CCCCccEEEecCCCCcccccc---c-----CCCcCEEeccCCCCcccc-ccccCCCCccEEeeeCCCCCcc--ccccc
Q 036772          159 --NLDSLKVLYLGGCSNLKRFLE---I-----SCNIENLDLSETAIEELP-SSIGNLSRLVRLDLTNCSRLKS--VSNSL  225 (583)
Q Consensus       159 --~l~~L~~L~L~~c~~l~~~~~---~-----~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~--lp~~l  225 (583)
                        .+++|++|++++|..-. .|.   .     ..+|++|++++|.++.++ ..++.+++|++|++++|.....  ++..+
T Consensus       117 ~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 EATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             SCCSCCCSEEEEESCBCSS-SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             HhcCCCccEEEccCCCCcc-hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence              46666666666643221 121   1     156777777777777776 5688888888888888876544  33344


Q ss_pred             --cCCCCCcEEEccCCCCCC--ccc-cccCCCCcccEEEccCCccccCccEEEeccCCCcccC--ccCCCCCCCCEEEcc
Q 036772          226 --CNLKSLQYLFLSGCLKLE--KLP-EEIGNLESLKIMLANETAISQNLVDMSLVDCGITELP--ESLGRSPSLKFLNLA  298 (583)
Q Consensus       226 --~~l~~L~~L~l~~c~~l~--~lp-~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls  298 (583)
                        ..+++|++|++++|....  .++ ..+..+++|+.|++++|.+              ++.+  ..+..+++|++|+++
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l--------------~~~~~~~~~~~l~~L~~L~Ls  261 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL--------------RDAAGAPSCDWPSQLNSLNLS  261 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCC--------------CSSCCCSCCCCCTTCCEEECT
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcC--------------CcccchhhhhhcCCCCEEECC
Confidence              778888888888875442  222 2234556666666655554              4433  456678999999999


Q ss_pred             CCCCcccChhhhccCcccccccccccccccCCCCCCCCeeeeeCCcCcccccCccccccccccc
Q 036772          299 ENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSEL  362 (583)
Q Consensus       299 ~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~~l~~~~c~sL~~l~~l~~l~~~~~~~  362 (583)
                      +|.++.+|..+.  ++|+.|++++| +++.+|.              +..+++|+.+.+.+|++
T Consensus       262 ~N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~--------------~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          262 FTGLKQVPKGLP--AKLSVLDLSYN-RLDRNPS--------------PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             TSCCSSCCSSCC--SEEEEEECCSS-CCCSCCC--------------TTTSCEEEEEECTTCTT
T ss_pred             CCccChhhhhcc--CCceEEECCCC-CCCCChh--------------HhhCCCCCEEeccCCCC
Confidence            999999998776  89999999998 5666552              45566677777777765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=7.8e-20  Score=196.95  Aligned_cols=217  Identities=19%  Similarity=0.136  Sum_probs=164.0

Q ss_pred             ccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccE
Q 036772           87 VQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKV  165 (583)
Q Consensus        87 ~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~  165 (583)
                      ...+++|+.|+|++|......| .+..+++|++|+|++|......+  ++.+++|++|+|++| .++.+|.   .++|++
T Consensus        30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~---~~~L~~  103 (487)
T 3oja_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV---GPSIET  103 (487)
T ss_dssp             STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE---CTTCCE
T ss_pred             cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC---CCCcCE
Confidence            3455689999999997766655 58899999999999987654444  889999999999985 5665553   378888


Q ss_pred             EEecCCCCcccccccCCCcCEEeccCCCCccc-cccccCCCCccEEeeeCCCCCcccccccc-CCCCCcEEEccCCCCCC
Q 036772          166 LYLGGCSNLKRFLEISCNIENLDLSETAIEEL-PSSIGNLSRLVRLDLTNCSRLKSVSNSLC-NLKSLQYLFLSGCLKLE  243 (583)
Q Consensus       166 L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~l~~c~~l~  243 (583)
                      |++++|......+..+++|+.|++++|.++.+ |..++.+++|+.|++++|......|..+. .+++|++|++++|....
T Consensus       104 L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          104 LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             EECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             EECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence            88888765555555667788888888888866 44577788888888888777666666665 67888888888876433


Q ss_pred             ccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772          244 KLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       244 ~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c  323 (583)
                      . |. ...+++|+              .|++++|.++++|..+..+++|+.|+|++|.++.+|..+..+++|+.|++++|
T Consensus       184 ~-~~-~~~l~~L~--------------~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          184 V-KG-QVVFAKLK--------------TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             E-EC-CCCCTTCC--------------EEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTC
T ss_pred             c-cc-cccCCCCC--------------EEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCC
Confidence            2 22 22345544              45555555666888888999999999999999999999999999999999987


Q ss_pred             cc
Q 036772          324 KR  325 (583)
Q Consensus       324 ~~  325 (583)
                      +-
T Consensus       248 ~l  249 (487)
T 3oja_A          248 GF  249 (487)
T ss_dssp             CB
T ss_pred             CC
Confidence            53

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.80  E-value=1.1e-18  Score=173.65  Aligned_cols=217  Identities=22%  Similarity=0.243  Sum_probs=122.8

Q ss_pred             EEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCc
Q 036772           50 YFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASL  127 (583)
Q Consensus        50 ~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l  127 (583)
                      ..+..+..+..+|..+ +++|++|++++|.++.++. .+.++++|++|+|++|......+ .+..+++|++|++++|...
T Consensus        11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             EEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             eEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence            4555666777788754 3578888888888887765 57788888888888885544333 3677777777777776654


Q ss_pred             hhhhhhccCCCCCCEEEccCCCCCCcCCC-cC-CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCcc--ccccccC
Q 036772          128 IEIHSSIQHLNKLVFLNLGRCISLKSLPT-GI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEE--LPSSIGN  203 (583)
Q Consensus       128 ~~~~~~i~~l~~L~~L~L~~c~~l~~lp~-~~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~--lp~~i~~  203 (583)
                      ...+..+..+++|+.|++++| .+..++. .+ .+++|++|++++                     |.++.  +|..++.
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~---------------------n~l~~~~l~~~~~~  147 (276)
T 2z62_A           90 SLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAH---------------------NLIQSFKLPEYFSN  147 (276)
T ss_dssp             EECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCS---------------------SCCCCCCCCGGGGG
T ss_pred             ccChhhhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcC---------------------CccceecCchhhcc
Confidence            444456666667777766663 3333332 12 333333333333                     33332  3444555


Q ss_pred             CCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccC
Q 036772          204 LSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELP  283 (583)
Q Consensus       204 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp  283 (583)
                      +++|++|++++|......+..+..+++|+                     .|.             ..|++++|.+..++
T Consensus       148 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~---------------------~l~-------------l~L~ls~n~l~~~~  193 (276)
T 2z62_A          148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMP---------------------LLN-------------LSLDLSLNPMNFIQ  193 (276)
T ss_dssp             CTTCCEEECCSSCCCEECGGGGHHHHTCT---------------------TCC-------------EEEECCSSCCCEEC
T ss_pred             CCCCCEEECCCCCCCcCCHHHhhhhhhcc---------------------ccc-------------eeeecCCCcccccC
Confidence            55555555555544333333333332222                     000             02334444444455


Q ss_pred             ccCCCCCCCCEEEccCCCCcccChh-hhccCcccccccccc
Q 036772          284 ESLGRSPSLKFLNLAENDFEKIPSS-IKQLSNLLFLTLQNC  323 (583)
Q Consensus       284 ~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c  323 (583)
                      .......+|+.|++++|.++.+|.. +..+++|+.|++++|
T Consensus       194 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          194 PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             TTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             ccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence            4444445677777777776666554 356666666666665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.79  E-value=2.6e-18  Score=172.25  Aligned_cols=198  Identities=25%  Similarity=0.238  Sum_probs=123.0

Q ss_pred             ccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccE
Q 036772           87 VQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKV  165 (583)
Q Consensus        87 ~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~  165 (583)
                      +.++++|+.++++++.. +.+| .+.  ++|+.|+|++|......+..+..+++|+.|+|++| .++.++....+++|++
T Consensus         6 ~~~l~~l~~l~~~~~~l-~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~   81 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGT   81 (290)
T ss_dssp             EECSTTCCEEECTTSCC-SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCE
T ss_pred             ccccCCccEEECCCCCC-CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCCCCCCcCCE
Confidence            34556666666666533 3333 232  46666666666654444566777777777777763 4444443333444444


Q ss_pred             EEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcc
Q 036772          166 LYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKL  245 (583)
Q Consensus       166 L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l  245 (583)
                      |+                     +++|.++.+|..+..+++|++|++++|......+..+.++++|++|++++|......
T Consensus        82 L~---------------------Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~  140 (290)
T 1p9a_G           82 LD---------------------LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP  140 (290)
T ss_dssp             EE---------------------CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred             EE---------------------CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC
Confidence            44                     444556666666677777777777776655544566777777777777776554444


Q ss_pred             ccccCCCCcccEEEccCCccccCccEEEeccCCCcccCc-cCCCCCCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772          246 PEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPE-SLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       246 p~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c  323 (583)
                      +..+..+++|+.|++++|.+              +.+|. .+..+++|+.|+|++|.++.+|..+..+.+|+.|++++|
T Consensus       141 ~~~~~~l~~L~~L~L~~N~l--------------~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          141 PGLLTPTPKLEKLSLANNNL--------------TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             TTTTTTCTTCCEEECTTSCC--------------SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred             hhhcccccCCCEEECCCCcC--------------CccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence            44456666666555555443              34554 346778888888888888888877777777777777766

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.79  E-value=2.4e-18  Score=171.12  Aligned_cols=200  Identities=23%  Similarity=0.194  Sum_probs=141.8

Q ss_pred             ccCCCccEEEecCCCCCCCCC-CC-CCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCC-CCCCCCCcCE
Q 036772           43 SFFNELRYFQWDGYPLKSLPS-KN-IPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEW  118 (583)
Q Consensus        43 ~l~~~Lr~L~l~~~~l~~lp~-~~-~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~  118 (583)
                      .+|++|++|++++|.++.++. .+ .+++|++|++++|.++.++. .+..+++|++|+|++|......+ .+..+++|++
T Consensus        25 ~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (276)
T 2z62_A           25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  104 (276)
T ss_dssp             SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence            346789999999999999886 34 78999999999999998875 58999999999999997666554 4899999999


Q ss_pred             EeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCc--CCCcC-CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCc
Q 036772          119 LDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKS--LPTGI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIE  195 (583)
Q Consensus       119 L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~--lp~~~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~  195 (583)
                      |++++|......+..++.+++|++|++++| .++.  +|..+ .+++|++|++++                     |.++
T Consensus       105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~---------------------N~l~  162 (276)
T 2z62_A          105 LVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSS---------------------NKIQ  162 (276)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCS---------------------SCCC
T ss_pred             EECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCC---------------------CCCC
Confidence            999998766555557899999999999995 4444  45555 567777776666                     4455


Q ss_pred             cccc-cccCCCCcc----EEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCcc
Q 036772          196 ELPS-SIGNLSRLV----RLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLV  270 (583)
Q Consensus       196 ~lp~-~i~~l~~L~----~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~  270 (583)
                      .++. .+..+++|+    .|++++|.... ++.......+|++|+                                   
T Consensus       163 ~~~~~~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~~~~~L~~L~-----------------------------------  206 (276)
T 2z62_A          163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELA-----------------------------------  206 (276)
T ss_dssp             EECGGGGHHHHTCTTCCEEEECCSSCCCE-ECTTSSCSCCEEEEE-----------------------------------
T ss_pred             cCCHHHhhhhhhccccceeeecCCCcccc-cCccccCCCcccEEE-----------------------------------
Confidence            4432 344444444    67777655432 222222222333333                                   


Q ss_pred             EEEeccCCCcccCc-cCCCCCCCCEEEccCCCCc
Q 036772          271 DMSLVDCGITELPE-SLGRSPSLKFLNLAENDFE  303 (583)
Q Consensus       271 ~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~  303 (583)
                         +++|.++++|. .+..+++|+.|++++|.+.
T Consensus       207 ---L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          207 ---LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             ---CCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             ---CCCCceeecCHhHhcccccccEEEccCCccc
Confidence               33334444554 3577888888888888766

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.78  E-value=2.5e-20  Score=205.75  Aligned_cols=277  Identities=17%  Similarity=0.112  Sum_probs=179.7

Q ss_pred             CCccEEEecCCCCCCCC-----CCC-CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCC----CCCCCCCCC
Q 036772           46 NELRYFQWDGYPLKSLP-----SKN-IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSR----IPDLSLALN  115 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp-----~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~----~p~l~~l~~  115 (583)
                      ++|+.|+++++.+..+.     ..+ .+++|++|+++++.+..++..+..+++|+.|+++.......    ...+..+++
T Consensus       192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~  271 (592)
T 3ogk_B          192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK  271 (592)
T ss_dssp             CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred             CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence            36666666666654222     111 45667777777776666666666677777777764322211    124566777


Q ss_pred             cCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCC--CcC-CCCCccEEEecCCCCc---ccccccCCCcCEEec
Q 036772          116 LEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLP--TGI-NLDSLKVLYLGGCSNL---KRFLEISCNIENLDL  189 (583)
Q Consensus       116 L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp--~~~-~l~~L~~L~L~~c~~l---~~~~~~~~~L~~L~L  189 (583)
                      |+.|+++++ ....++..+..+++|++|++++|. +....  ..+ .+++|++|+++++..-   ..+....++|++|++
T Consensus       272 L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L  349 (592)
T 3ogk_B          272 LCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI  349 (592)
T ss_dssp             CCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred             ccccCcccc-chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence            888887774 345566777778888888888876 43211  112 6788888888743221   222344577888888


Q ss_pred             cC-----------CCCcc--ccccccCCCCccEEeeeCCCCCccccccccC-CCCCcEEEccC---CCCCCcc------c
Q 036772          190 SE-----------TAIEE--LPSSIGNLSRLVRLDLTNCSRLKSVSNSLCN-LKSLQYLFLSG---CLKLEKL------P  246 (583)
Q Consensus       190 ~~-----------~~i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~-l~~L~~L~l~~---c~~l~~l------p  246 (583)
                      ++           +.++.  ++.....+++|++|++..+......+..+.. +++|++|++++   |+.+...      +
T Consensus       350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~  429 (592)
T 3ogk_B          350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR  429 (592)
T ss_dssp             ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred             ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence            83           45542  3333456788888888665555444555554 78889998874   4455543      3


Q ss_pred             cccCCCCcccEEEccCCc--cc-----------cCccEEEeccCCCcc--cCccCCCCCCCCEEEccCCCCc--ccChhh
Q 036772          247 EEIGNLESLKIMLANETA--IS-----------QNLVDMSLVDCGITE--LPESLGRSPSLKFLNLAENDFE--KIPSSI  309 (583)
Q Consensus       247 ~~l~~l~~L~~L~l~~~~--i~-----------~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~Ls~n~l~--~lp~~i  309 (583)
                      ..+..+++|+.|+++.+.  +.           ..|+.|++++|++++  ++..+..+++|+.|+|++|.++  .++..+
T Consensus       430 ~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~  509 (592)
T 3ogk_B          430 SLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV  509 (592)
T ss_dssp             HHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred             HHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence            346668889999886432  22           238889999888876  5566678889999999999876  355556


Q ss_pred             hccCccccccccccc
Q 036772          310 KQLSNLLFLTLQNCK  324 (583)
Q Consensus       310 ~~l~~L~~L~L~~c~  324 (583)
                      ..+++|+.|++++|+
T Consensus       510 ~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          510 TKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHCSSCCEEEEESCB
T ss_pred             HhcCccCeeECcCCc
Confidence            778899999999885

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.78  E-value=1.4e-17  Score=165.02  Aligned_cols=102  Identities=20%  Similarity=0.134  Sum_probs=71.1

Q ss_pred             CCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeee
Q 036772           45 FNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLV  122 (583)
Q Consensus        45 ~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~  122 (583)
                      ...++.++++++.++.+|..+. ++|++|++++|+++.++. .+.++++|++|+|++|......+. +..+++|++|+++
T Consensus        15 ~~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           15 NNNKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             ETTTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred             CCCCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence            3467888998888888887543 678888888888887765 478888888888888865433333 5667777777777


Q ss_pred             CCCCchhhhhhccCCCCCCEEEccC
Q 036772          123 GCASLIEIHSSIQHLNKLVFLNLGR  147 (583)
Q Consensus       123 ~~~~l~~~~~~i~~l~~L~~L~L~~  147 (583)
                      +|......+..+..+++|+.|++++
T Consensus        94 ~n~l~~~~~~~~~~l~~L~~L~l~~  118 (270)
T 2o6q_A           94 DNKLQALPIGVFDQLVNLAELRLDR  118 (270)
T ss_dssp             SSCCCCCCTTTTTTCSSCCEEECCS
T ss_pred             CCcCCcCCHhHcccccCCCEEECCC
Confidence            7654333333455666666666665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=3.5e-18  Score=176.17  Aligned_cols=190  Identities=20%  Similarity=0.234  Sum_probs=138.0

Q ss_pred             ccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCC
Q 036772           48 LRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGC  124 (583)
Q Consensus        48 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~  124 (583)
                      -+.++.+++.++++|..+ ++++++|+|++|+|+.++.+ |.++++|++|+|++|+....+|  .|..+++|+++...++
T Consensus        11 ~~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           11 NRVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TTEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CCEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            367888899999999876 57899999999999999875 8999999999999998877766  3788999887655544


Q ss_pred             CCchhh-hhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCCCccccccc-----CCCcCEEeccCCCCcc
Q 036772          125 ASLIEI-HSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEI-----SCNIENLDLSETAIEE  196 (583)
Q Consensus       125 ~~l~~~-~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~~~-----~~~L~~L~L~~~~i~~  196 (583)
                      ..+..+ +..++.+++|++|++++ +.++.+|...  ...++..|++.++..+..++..     ...++.|++++|.++.
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CcccccCchhhhhccccccccccc-cccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            455555 56789999999999998 4567776644  6677888888887777665532     1245566777777766


Q ss_pred             ccccccCCCCccEEeeeCCCCCccccc-cccCCCCCcEEEccCC
Q 036772          197 LPSSIGNLSRLVRLDLTNCSRLKSVSN-SLCNLKSLQYLFLSGC  239 (583)
Q Consensus       197 lp~~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~c  239 (583)
                      +|..+....+|+.|++.+++.++.+|. .+..+++|++|++++|
T Consensus       169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N  212 (350)
T 4ay9_X          169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT  212 (350)
T ss_dssp             ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred             CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence            666555555666666665555555543 3455555555555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.77  E-value=1.8e-19  Score=184.37  Aligned_cols=196  Identities=23%  Similarity=0.286  Sum_probs=99.9

Q ss_pred             CCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCC-CC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEc
Q 036772           68 EHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSR-IP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNL  145 (583)
Q Consensus        68 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~-~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L  145 (583)
                      ++++.|++++|.+...+..+..+++|++|+|++|..... ++ .+..+++|++|++++|......+..++.+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            344444444444444443344445555555554432211 22 2344445555555554433344444445555555555


Q ss_pred             cCCCCCCc--CCCcC-CCCCccEEEecCCCCccc--c---cccCC-CcCEEeccCCC--C--ccccccccCCCCccEEee
Q 036772          146 GRCISLKS--LPTGI-NLDSLKVLYLGGCSNLKR--F---LEISC-NIENLDLSETA--I--EELPSSIGNLSRLVRLDL  212 (583)
Q Consensus       146 ~~c~~l~~--lp~~~-~l~~L~~L~L~~c~~l~~--~---~~~~~-~L~~L~L~~~~--i--~~lp~~i~~l~~L~~L~L  212 (583)
                      ++|..++.  ++..+ .+++|++|++++|..+..  +   ....+ +|++|++++|.  +  ..+|..+..+++|+.|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            55433332  23222 445555555555422221  1   12234 55555555553  2  345666667778888888


Q ss_pred             eCCCC-CccccccccCCCCCcEEEccCCCCCC-ccccccCCCCcccEEEccCC
Q 036772          213 TNCSR-LKSVSNSLCNLKSLQYLFLSGCLKLE-KLPEEIGNLESLKIMLANET  263 (583)
Q Consensus       213 ~~~~~-l~~lp~~l~~l~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~~  263 (583)
                      ++|.. ....+..+.++++|++|++++|..+. .....+.++++|+.|+++++
T Consensus       230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            77773 34456667777888888888775221 11224556666666666655

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.77  E-value=7.9e-19  Score=174.36  Aligned_cols=39  Identities=18%  Similarity=0.261  Sum_probs=18.8

Q ss_pred             CCCCCCCCEEEccCCCCcccChhhhccCcccccccccccccccCC
Q 036772          286 LGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLP  330 (583)
Q Consensus       286 l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp  330 (583)
                      +..+++|+.|++++|.+.      +.+++|+.|+++.+..-..+|
T Consensus       201 ~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip  239 (272)
T 3rfs_A          201 FDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVR  239 (272)
T ss_dssp             TTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBB
T ss_pred             HhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCccc
Confidence            445555555555555443      223345555555543333443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.76  E-value=7.4e-18  Score=163.91  Aligned_cols=205  Identities=18%  Similarity=0.175  Sum_probs=129.9

Q ss_pred             hhhhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhh-hccCCCCCCEEEccCCCCCCcCCCc
Q 036772           80 IEQLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHS-SIQHLNKLVFLNLGRCISLKSLPTG  157 (583)
Q Consensus        80 l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~-~i~~l~~L~~L~L~~c~~l~~lp~~  157 (583)
                      ++.+|. +  .++|++|++++|......+ .+..+++|++|++++|..+..++. .+..+++|+.|++++|+.++.+|..
T Consensus        23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            555555 2  2367777777765443333 366666777777776653444443 5666666666666665555555543


Q ss_pred             C--CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCcc---EEeeeCCCCCcccc-ccccCCCCC
Q 036772          158 I--NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLV---RLDLTNCSRLKSVS-NSLCNLKSL  231 (583)
Q Consensus       158 ~--~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~---~L~L~~~~~l~~lp-~~l~~l~~L  231 (583)
                      .  .+++|++|++++                     |.++.+|. +..+++|+   .|++++|..+..+| ..+.++++|
T Consensus       100 ~f~~l~~L~~L~l~~---------------------n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L  157 (239)
T 2xwt_C          100 ALKELPLLKFLGIFN---------------------TGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE  157 (239)
T ss_dssp             SEECCTTCCEEEEEE---------------------ECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS
T ss_pred             HhCCCCCCCEEeCCC---------------------CCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcc
Confidence            2  455555555554                     55666665 66677776   88888883444444 457788888


Q ss_pred             c-EEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccC-ccCCCC-CCCCEEEccCCCCcccChh
Q 036772          232 Q-YLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELP-ESLGRS-PSLKFLNLAENDFEKIPSS  308 (583)
Q Consensus       232 ~-~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~l-~~L~~L~Ls~n~l~~lp~~  308 (583)
                      + +|++++|... .+|......++|+.|++++|.             .++.+| ..+..+ ++|+.|++++|.++.+|..
T Consensus       158 ~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~-------------~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~  223 (239)
T 2xwt_C          158 TLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNK-------------YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK  223 (239)
T ss_dssp             EEEEECCSCCCC-EECTTTTTTCEEEEEECTTCT-------------TCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred             eeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCC-------------CcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence            8 8888887544 555543333555544444442             255565 567888 9999999999999999875


Q ss_pred             hhccCcccccccccccc
Q 036772          309 IKQLSNLLFLTLQNCKR  325 (583)
Q Consensus       309 i~~l~~L~~L~L~~c~~  325 (583)
                        .+++|+.|+++++..
T Consensus       224 --~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          224 --GLEHLKELIARNTWT  238 (239)
T ss_dssp             --TCTTCSEEECTTC--
T ss_pred             --HhccCceeeccCccC
Confidence              688899999887753

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.76  E-value=4.1e-17  Score=161.77  Aligned_cols=167  Identities=21%  Similarity=0.197  Sum_probs=90.7

Q ss_pred             CceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhh-hhccCCCCCCEEEcc
Q 036772           69 HLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIH-SSIQHLNKLVFLNLG  146 (583)
Q Consensus        69 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~  146 (583)
                      +.+.++++++.++.+|..+.  ++|+.|+|++|......+ .+..+++|++|++++|... .++ ..+..+++|++|+++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~   93 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT   93 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred             CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence            46677888887777776553  567777877776544333 3667777777777776543 333 334666667777766


Q ss_pred             CCCCCCcCCCcC--CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccc-cccCCCCccEEeeeCCCCCccccc
Q 036772          147 RCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVSN  223 (583)
Q Consensus       147 ~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~  223 (583)
                      +| .++.+|...  .+++|++|++++                     |.++.++. .++.+++|++|++++|......+.
T Consensus        94 ~n-~l~~~~~~~~~~l~~L~~L~l~~---------------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  151 (270)
T 2o6q_A           94 DN-KLQALPIGVFDQLVNLAELRLDR---------------------NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG  151 (270)
T ss_dssp             SS-CCCCCCTTTTTTCSSCCEEECCS---------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CC-cCCcCCHhHcccccCCCEEECCC---------------------CccCeeCHHHhCcCcCCCEEECCCCcCCccCHh
Confidence            63 344444332  344444444444                     34444433 245566666666666544333333


Q ss_pred             cccCCCCCcEEEccCCCCCCccccccCCCCcccEEEc
Q 036772          224 SLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLA  260 (583)
Q Consensus       224 ~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  260 (583)
                      .+..+++|++|++++|......+..+..+++|+.|++
T Consensus       152 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  188 (270)
T 2o6q_A          152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL  188 (270)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             HccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence            3455555555555554333322223444444443333

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.76  E-value=2.1e-17  Score=165.71  Aligned_cols=202  Identities=20%  Similarity=0.164  Sum_probs=123.5

Q ss_pred             ccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEE
Q 036772           41 LESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWL  119 (583)
Q Consensus        41 l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L  119 (583)
                      +..+ .+++.++++++.++++|..+. +++++|++++|.+..++ ..+..+++|++|+|++|.. ..++..+.+++|++|
T Consensus         6 ~~~l-~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L   82 (290)
T 1p9a_G            6 VSKV-ASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTL   82 (290)
T ss_dssp             EECS-TTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECCSCCTTCCEE
T ss_pred             cccc-CCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc-CcccCCCCCCcCCEE
Confidence            4445 478999999999999987653 68899999999988764 4588888888888888853 334444566666666


Q ss_pred             eeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccc
Q 036772          120 DLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPS  199 (583)
Q Consensus       120 ~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~  199 (583)
                      ++++|.. ..+|..+..+++|+.|++++| .++.+|.                                          .
T Consensus        83 ~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N-~l~~l~~------------------------------------------~  118 (290)
T 1p9a_G           83 DLSHNQL-QSLPLLGQTLPALTVLDVSFN-RLTSLPL------------------------------------------G  118 (290)
T ss_dssp             ECCSSCC-SSCCCCTTTCTTCCEEECCSS-CCCCCCS------------------------------------------S
T ss_pred             ECCCCcC-CcCchhhccCCCCCEEECCCC-cCcccCH------------------------------------------H
Confidence            6666532 344444444555555555442 2333332                                          2


Q ss_pred             cccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCC
Q 036772          200 SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGI  279 (583)
Q Consensus       200 ~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l  279 (583)
                      .+..+++|++|++++|......+..+..+++|+.|++++|......+..+..+++|+.|++++|.              +
T Consensus       119 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~--------------l  184 (290)
T 1p9a_G          119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS--------------L  184 (290)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC--------------C
T ss_pred             HHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc--------------C
Confidence            24445555555555544433333344555566666666554332222234555555555444444              3


Q ss_pred             cccCccCCCCCCCCEEEccCCCCc
Q 036772          280 TELPESLGRSPSLKFLNLAENDFE  303 (583)
Q Consensus       280 ~~lp~~l~~l~~L~~L~Ls~n~l~  303 (583)
                      +.+|..+..+++|+.|+|++|.+.
T Consensus       185 ~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          185 YTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CccChhhcccccCCeEEeCCCCcc
Confidence            347777778888999999988765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.75  E-value=1.2e-17  Score=162.46  Aligned_cols=204  Identities=19%  Similarity=0.280  Sum_probs=129.8

Q ss_pred             CCCCCCCCCCCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCchhhh-h
Q 036772           57 PLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGCASLIEIH-S  132 (583)
Q Consensus        57 ~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~~-~  132 (583)
                      .++++|.  .+++|++|++++|+++.++. .+..+++|++|++++|+.++.++  .|..+++|++|++++|..+..++ .
T Consensus        22 ~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~   99 (239)
T 2xwt_C           22 DIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD   99 (239)
T ss_dssp             SCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred             CccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence            3777887  45588888888888888876 47888999999999887455554  47888899999998833444554 5


Q ss_pred             hccCCCCCCEEEccCCCCCCcCCCcCCCCCcc---EEEecCCCCcccccccCCCcCEEeccCCCCccccc-cccCCCCcc
Q 036772          133 SIQHLNKLVFLNLGRCISLKSLPTGINLDSLK---VLYLGGCSNLKRFLEISCNIENLDLSETAIEELPS-SIGNLSRLV  208 (583)
Q Consensus       133 ~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~---~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~  208 (583)
                      .+..+++|+.|++++| .++.+|....+++|+   +|++++|..+.                    .+|. .+..+++|+
T Consensus       100 ~f~~l~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~--------------------~i~~~~~~~l~~L~  158 (239)
T 2xwt_C          100 ALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMT--------------------SIPVNAFQGLCNET  158 (239)
T ss_dssp             SEECCTTCCEEEEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCC--------------------EECTTTTTTTBSSE
T ss_pred             HhCCCCCCCEEeCCCC-CCccccccccccccccccEEECCCCcchh--------------------hcCcccccchhcce
Confidence            6788999999999884 466677622666666   77777653333                    3333 245555666


Q ss_pred             -EEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcc-ccccCCC-CcccEEEccCCccccCccEEEeccCCCcccCcc
Q 036772          209 -RLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKL-PEEIGNL-ESLKIMLANETAISQNLVDMSLVDCGITELPES  285 (583)
Q Consensus       209 -~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l-~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~  285 (583)
                       .|++++|... .+|......++|++|++++|..+..+ +..+..+ ++|+.|++++|.+              +.+|..
T Consensus       159 ~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l--------------~~l~~~  223 (239)
T 2xwt_C          159 LTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV--------------TALPSK  223 (239)
T ss_dssp             EEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC--------------CCCCCT
T ss_pred             eEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc--------------ccCChh
Confidence             6666555443 34433333356666666665433333 2344555 5555444444433              335543


Q ss_pred             CCCCCCCCEEEccCC
Q 036772          286 LGRSPSLKFLNLAEN  300 (583)
Q Consensus       286 l~~l~~L~~L~Ls~n  300 (583)
                        .+++|+.|+++++
T Consensus       224 --~~~~L~~L~l~~~  236 (239)
T 2xwt_C          224 --GLEHLKELIARNT  236 (239)
T ss_dssp             --TCTTCSEEECTTC
T ss_pred             --HhccCceeeccCc
Confidence              5677777777665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.74  E-value=1.1e-18  Score=178.48  Aligned_cols=238  Identities=18%  Similarity=0.223  Sum_probs=178.2

Q ss_pred             CCCceEEEccCCChhhhcccccCC--CCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchh-hhhhccCCCCCCEE
Q 036772           67 PEHLVSLEMPHSNIEQLWNGVQNL--AALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIE-IHSSIQHLNKLVFL  143 (583)
Q Consensus        67 ~~~L~~L~L~~~~l~~l~~~~~~l--~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~-~~~~i~~l~~L~~L  143 (583)
                      +..++.++++++.+.  +..+..+  ++++.|++++|......+.+..+++|++|++++|..... ++..+..+++|++|
T Consensus        46 ~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L  123 (336)
T 2ast_B           46 ESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL  123 (336)
T ss_dssp             STTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             chhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence            345788999988776  3445556  899999999998877777788899999999999986555 78889999999999


Q ss_pred             EccCCCCCCcCCCcC-CCCCccEEEecCCCCccc--cc---ccCCCcCEEeccCC-CCcc--ccccccCCC-CccEEeee
Q 036772          144 NLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKR--FL---EISCNIENLDLSET-AIEE--LPSSIGNLS-RLVRLDLT  213 (583)
Q Consensus       144 ~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~--~~---~~~~~L~~L~L~~~-~i~~--lp~~i~~l~-~L~~L~L~  213 (583)
                      ++++|......+..+ .+++|++|++++|..+..  ++   ...++|++|++++| .++.  ++..+..++ +|++|+++
T Consensus       124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~  203 (336)
T 2ast_B          124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  203 (336)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence            999985433455545 799999999999965552  33   34678999999999 8874  677788888 99999999


Q ss_pred             CCC--CC-ccccccccCCCCCcEEEccCCCC-CCccccccCCCCcccEEEccCCc-cccCccEEEeccCCCcccCccCCC
Q 036772          214 NCS--RL-KSVSNSLCNLKSLQYLFLSGCLK-LEKLPEEIGNLESLKIMLANETA-ISQNLVDMSLVDCGITELPESLGR  288 (583)
Q Consensus       214 ~~~--~l-~~lp~~l~~l~~L~~L~l~~c~~-l~~lp~~l~~l~~L~~L~l~~~~-i~~~L~~L~L~~~~l~~lp~~l~~  288 (583)
                      +|.  .. ..++..+.++++|++|++++|.. ....+..+..+++|+.|++++|. +..             .....+..
T Consensus       204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-------------~~~~~l~~  270 (336)
T 2ast_B          204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP-------------ETLLELGE  270 (336)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG-------------GGGGGGGG
T ss_pred             CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH-------------HHHHHHhc
Confidence            984  32 34677777889999999999884 34666777778887777777663 111             01134677


Q ss_pred             CCCCCEEEccCCCCcccCh-hhhcc-Ccccccccccc
Q 036772          289 SPSLKFLNLAENDFEKIPS-SIKQL-SNLLFLTLQNC  323 (583)
Q Consensus       289 l~~L~~L~Ls~n~l~~lp~-~i~~l-~~L~~L~L~~c  323 (583)
                      +++|+.|++++|    ++. .+..+ .+|..|++++|
T Consensus       271 ~~~L~~L~l~~~----i~~~~~~~l~~~l~~L~l~~n  303 (336)
T 2ast_B          271 IPTLKTLQVFGI----VPDGTLQLLKEALPHLQINCS  303 (336)
T ss_dssp             CTTCCEEECTTS----SCTTCHHHHHHHSTTSEESCC
T ss_pred             CCCCCEEeccCc----cCHHHHHHHHhhCcceEEecc
Confidence            899999999988    332 23333 24667777655

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.74  E-value=2e-17  Score=164.24  Aligned_cols=205  Identities=22%  Similarity=0.243  Sum_probs=101.1

Q ss_pred             CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEc
Q 036772           66 IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNL  145 (583)
Q Consensus        66 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L  145 (583)
                      .+++|++|++.++.++.++ ++..+++|++|++++|.. ..++.+..+++|++|++++|......+..++.+++|++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKL-HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCC-CCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCC-CCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            3444444444444444332 244445555555555432 22334445555555555554433222333455555555555


Q ss_pred             cCCCCCCcCCCc-C-CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCcccccc-ccCCCCccEEeeeCCCCCcccc
Q 036772          146 GRCISLKSLPTG-I-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSS-IGNLSRLVRLDLTNCSRLKSVS  222 (583)
Q Consensus       146 ~~c~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp  222 (583)
                      ++| .++.++.. + .+++|++|++++|                     .++.+|.. ++.+++|+.|++++|......+
T Consensus       117 ~~n-~l~~~~~~~~~~l~~L~~L~L~~n---------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  174 (272)
T 3rfs_A          117 VEN-QLQSLPDGVFDKLTNLTYLNLAHN---------------------QLQSLPKGVFDKLTNLTELDLSYNQLQSLPE  174 (272)
T ss_dssp             TTS-CCCCCCTTTTTTCTTCCEEECCSS---------------------CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCC-cCCccCHHHhccCCCCCEEECCCC---------------------ccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence            553 23333332 2 3444554444443                     22333222 3445555555555554443333


Q ss_pred             ccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCC
Q 036772          223 NSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDF  302 (583)
Q Consensus       223 ~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l  302 (583)
                      ..+..+++|++|++++|...+..+..+..+++|+.|++++|.+.                    +.+++|+.|+++.|.+
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------------------~~~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------------------CTCPGIRYLSEWINKH  234 (272)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC--------------------CCTTTTHHHHHHHHHT
T ss_pred             HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc--------------------ccCcHHHHHHHHHHhC
Confidence            34455566666666665544444444556666666666555432                    2355677777777777


Q ss_pred             c-ccChhhhccCc
Q 036772          303 E-KIPSSIKQLSN  314 (583)
Q Consensus       303 ~-~lp~~i~~l~~  314 (583)
                      + .+|.+++.++.
T Consensus       235 ~g~ip~~~~~~~~  247 (272)
T 3rfs_A          235 SGVVRNSAGSVAP  247 (272)
T ss_dssp             GGGBBCTTSCBCG
T ss_pred             CCcccCcccccCC
Confidence            6 67776665544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.74  E-value=2.7e-17  Score=166.34  Aligned_cols=195  Identities=18%  Similarity=0.271  Sum_probs=103.2

Q ss_pred             CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCC
Q 036772           46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCA  125 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~  125 (583)
                      ++|++|+++++.++.+|....+++|++|++++|.+..++. +..+++|++|+|++|. +..++.+..+++|++|++++|.
T Consensus        41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~  118 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQ  118 (308)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSC
T ss_pred             CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCC
Confidence            3666777766666666643356666666666666666555 6666666666666664 3334445555555555555543


Q ss_pred             CchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCC
Q 036772          126 SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLS  205 (583)
Q Consensus       126 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~  205 (583)
                      .. .++. +..+++|+.|++++|                                            .++.++. ++.++
T Consensus       119 l~-~~~~-l~~l~~L~~L~l~~n--------------------------------------------~l~~~~~-l~~l~  151 (308)
T 1h6u_A          119 IT-DVTP-LAGLSNLQVLYLDLN--------------------------------------------QITNISP-LAGLT  151 (308)
T ss_dssp             CC-CCGG-GTTCTTCCEEECCSS--------------------------------------------CCCCCGG-GGGCT
T ss_pred             CC-Cchh-hcCCCCCCEEECCCC--------------------------------------------ccCcCcc-ccCCC
Confidence            22 2221 444444444444442                                            2222222 34444


Q ss_pred             CccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCcc
Q 036772          206 RLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPES  285 (583)
Q Consensus       206 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~  285 (583)
                      +|+.|++++|... .++. +..+++|++|++++|... .++. +..+++|+.|++++|.+              .+++ .
T Consensus       152 ~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~L~~N~l--------------~~~~-~  212 (308)
T 1h6u_A          152 NLQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQI--------------SDVS-P  212 (308)
T ss_dssp             TCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCC-CCGG-GGGCTTCCEEECTTSCC--------------CBCG-G
T ss_pred             CccEEEccCCcCC-CChh-hcCCCCCCEEECCCCccC-cChh-hcCCCCCCEEEccCCcc--------------Cccc-c
Confidence            4444444444322 2222 444555555555554322 2222 44445544444444443              3344 3


Q ss_pred             CCCCCCCCEEEccCCCCcccChh
Q 036772          286 LGRSPSLKFLNLAENDFEKIPSS  308 (583)
Q Consensus       286 l~~l~~L~~L~Ls~n~l~~lp~~  308 (583)
                      +..+++|+.|++++|.++..|..
T Consensus       213 l~~l~~L~~L~l~~N~i~~~~~~  235 (308)
T 1h6u_A          213 LANTSNLFIVTLTNQTITNQPVF  235 (308)
T ss_dssp             GTTCTTCCEEEEEEEEEECCCEE
T ss_pred             ccCCCCCCEEEccCCeeecCCee
Confidence            67788889999999888877753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.74  E-value=3.5e-17  Score=165.56  Aligned_cols=196  Identities=26%  Similarity=0.358  Sum_probs=140.2

Q ss_pred             cCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEE
Q 036772           88 QNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLY  167 (583)
Q Consensus        88 ~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~  167 (583)
                      ..+++|+.|++++|. +..++.+..+++|++|++++|.. ..++. +..+++|++|++++| .++.++....+++|++|+
T Consensus        38 ~~l~~L~~L~l~~~~-i~~l~~~~~l~~L~~L~L~~n~i-~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~  113 (308)
T 1h6u_A           38 ADLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDNQI-TDLAP-LKNLTKITELELSGN-PLKNVSAIAGLQSIKTLD  113 (308)
T ss_dssp             HHHHTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCC-CCCGG-GTTCCSCCEEECCSC-CCSCCGGGTTCTTCCEEE
T ss_pred             HHcCCcCEEEeeCCC-ccCchhhhccCCCCEEEccCCcC-CCChh-HccCCCCCEEEccCC-cCCCchhhcCCCCCCEEE
Confidence            456677777777774 34456677777777777777643 33444 777777777777774 355554322455555555


Q ss_pred             ecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcccc
Q 036772          168 LGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPE  247 (583)
Q Consensus       168 L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~  247 (583)
                      +++                     |.++.++. +..+++|+.|++++|.... ++. +..+++|++|++++|... .++.
T Consensus       114 l~~---------------------n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~~  168 (308)
T 1h6u_A          114 LTS---------------------TQITDVTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVS-DLTP  168 (308)
T ss_dssp             CTT---------------------SCCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCGG
T ss_pred             CCC---------------------CCCCCchh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCC-CChh
Confidence            544                     56666665 8899999999999987654 443 888999999999998544 4554


Q ss_pred             ccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccccccc
Q 036772          248 EIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQ  327 (583)
Q Consensus       248 ~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~  327 (583)
                       +..+++|+.|++++|.+.              +++. +..+++|++|++++|.++.++. +..+++|+.|++++|+ +.
T Consensus       169 -l~~l~~L~~L~l~~n~l~--------------~~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~-i~  230 (308)
T 1h6u_A          169 -LANLSKLTTLKADDNKIS--------------DISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT-IT  230 (308)
T ss_dssp             -GTTCTTCCEEECCSSCCC--------------CCGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE-EE
T ss_pred             -hcCCCCCCEEECCCCccC--------------cChh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe-ee
Confidence             778888777777666654              3554 7889999999999999998884 8899999999999984 44


Q ss_pred             cCC
Q 036772          328 SLP  330 (583)
Q Consensus       328 ~lp  330 (583)
                      ..|
T Consensus       231 ~~~  233 (308)
T 1h6u_A          231 NQP  233 (308)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.73  E-value=1.8e-17  Score=167.88  Aligned_cols=219  Identities=19%  Similarity=0.177  Sum_probs=127.2

Q ss_pred             CCCCceEEEccCCChhh--hcc--cccCCCCccEEeccCCCCCCCCCC-C--CCCCCcCEEeeeCCCCchhhh----hhc
Q 036772           66 IPEHLVSLEMPHSNIEQ--LWN--GVQNLAALKRLNLSYCKQLSRIPD-L--SLALNLEWLDLVGCASLIEIH----SSI  134 (583)
Q Consensus        66 ~~~~L~~L~L~~~~l~~--l~~--~~~~l~~L~~L~Ls~~~~l~~~p~-l--~~l~~L~~L~L~~~~~l~~~~----~~i  134 (583)
                      ....++.|.+.+..+..  +..  ....+++|++|++++|......|. +  ..+++|++|+|++|......+    ..+
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            34457788888776642  111  123456799999999987777764 4  889999999999987665332    345


Q ss_pred             cCCCCCCEEEccCCCCCCcCC-CcC-CCCCccEEEecCCCCccc--c-----cccCCCcCEEeccCCCCccccccccCCC
Q 036772          135 QHLNKLVFLNLGRCISLKSLP-TGI-NLDSLKVLYLGGCSNLKR--F-----LEISCNIENLDLSETAIEELPSSIGNLS  205 (583)
Q Consensus       135 ~~l~~L~~L~L~~c~~l~~lp-~~~-~l~~L~~L~L~~c~~l~~--~-----~~~~~~L~~L~L~~~~i~~lp~~i~~l~  205 (583)
                      ..+++|++|+|++|. +..++ ..+ .+++|++|++++|.....  +     +..+++|++|++++|.++.++..     
T Consensus       142 ~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~-----  215 (310)
T 4glp_A          142 WLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV-----  215 (310)
T ss_dssp             TBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH-----
T ss_pred             hhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH-----
Confidence            689999999999865 45444 445 788888888888754321  1     12234455555555555443331     


Q ss_pred             CccEEeeeCCCCCccccc-cccCCCCCcEEEccCCCCCCccccccCCC---CcccEEEccCCccccCccEEEeccCCCcc
Q 036772          206 RLVRLDLTNCSRLKSVSN-SLCNLKSLQYLFLSGCLKLEKLPEEIGNL---ESLKIMLANETAISQNLVDMSLVDCGITE  281 (583)
Q Consensus       206 ~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~l~~l---~~L~~L~l~~~~i~~~L~~L~L~~~~l~~  281 (583)
                                      +. .+..+++|++|++++|......|+.+..+   ++|+.              |++++|.+++
T Consensus       216 ----------------~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~--------------L~Ls~N~l~~  265 (310)
T 4glp_A          216 ----------------CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNS--------------LNLSFAGLEQ  265 (310)
T ss_dssp             ----------------HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCC--------------EECCSSCCCS
T ss_pred             ----------------HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCE--------------EECCCCCCCc
Confidence                            01 12334445555555444433334433333   23333              3333333333


Q ss_pred             cCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772          282 LPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       282 lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c  323 (583)
                      +|..+.  ++|+.|+|++|.++.+|. +..+++|+.|++++|
T Consensus       266 lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          266 VPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGN  304 (310)
T ss_dssp             CCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSST
T ss_pred             hhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCC
Confidence            555443  566666666666666554 455666666666665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.73  E-value=1.4e-19  Score=199.77  Aligned_cols=190  Identities=18%  Similarity=0.202  Sum_probs=119.4

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCccc-ccCCCccEEEecCC-CCCC--CCCCC-CCCCceEEEccCCChhh-----h
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLE-SFFNELRYFQWDGY-PLKS--LPSKN-IPEHLVSLEMPHSNIEQ-----L   83 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~-~l~~~Lr~L~l~~~-~l~~--lp~~~-~~~~L~~L~L~~~~l~~-----l   83 (583)
                      .+++|+.|+++++.+     ....+..+. .+ ++|+.|++++| .+..  ++... .+++|++|++++|.+..     +
T Consensus       103 ~~~~L~~L~L~~~~~-----~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l  176 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVV-----TDDCLELIAKSF-KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL  176 (594)
T ss_dssp             HCTTCCEEEEESCBC-----CHHHHHHHHHHC-TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred             hCCCCCeEEeeCcEE-----cHHHHHHHHHhC-CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence            578899999987742     222223332 35 48999999888 3433  43333 57889999999887653     3


Q ss_pred             cccccCCCCccEEeccCCCCCCCCC-----C-CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCC---------
Q 036772           84 WNGVQNLAALKRLNLSYCKQLSRIP-----D-LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRC---------  148 (583)
Q Consensus        84 ~~~~~~l~~L~~L~Ls~~~~l~~~p-----~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c---------  148 (583)
                      +.....+++|+.|++++|.  ..++     . +..+++|++|++++|.....++..+..+++|+.|++..|         
T Consensus       177 ~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~  254 (594)
T 2p1m_B          177 SHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY  254 (594)
T ss_dssp             GGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred             HHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhH
Confidence            3334577889999998886  2222     1 234688999999988666667777777888888875443         


Q ss_pred             ----------CCCCcC-----------CCcC-CCCCccEEEecCCCCccc-----ccccCCCcCEEeccCCCCc--cccc
Q 036772          149 ----------ISLKSL-----------PTGI-NLDSLKVLYLGGCSNLKR-----FLEISCNIENLDLSETAIE--ELPS  199 (583)
Q Consensus       149 ----------~~l~~l-----------p~~~-~l~~L~~L~L~~c~~l~~-----~~~~~~~L~~L~L~~~~i~--~lp~  199 (583)
                                ..++.+           +..+ .+++|++|++++|. +..     +....++|+.|++.++ +.  .++.
T Consensus       255 ~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~  332 (594)
T 2p1m_B          255 SGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEV  332 (594)
T ss_dssp             HHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHH
T ss_pred             HHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHH
Confidence                      222221           1111 46788888888876 322     1234567777777766 33  1222


Q ss_pred             cccCCCCccEEeee
Q 036772          200 SIGNLSRLVRLDLT  213 (583)
Q Consensus       200 ~i~~l~~L~~L~L~  213 (583)
                      ....+++|+.|++.
T Consensus       333 l~~~~~~L~~L~L~  346 (594)
T 2p1m_B          333 LASTCKDLRELRVF  346 (594)
T ss_dssp             HHHHCTTCCEEEEE
T ss_pred             HHHhCCCCCEEEEe
Confidence            23346677777773

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.72  E-value=1e-18  Score=182.55  Aligned_cols=230  Identities=15%  Similarity=0.135  Sum_probs=120.0

Q ss_pred             CCCCceEEEccCCChhh-----hcccccCCCCccEEeccCCCCCC---CCC-C-------CCCCCCcCEEeeeCCCCch-
Q 036772           66 IPEHLVSLEMPHSNIEQ-----LWNGVQNLAALKRLNLSYCKQLS---RIP-D-------LSLALNLEWLDLVGCASLI-  128 (583)
Q Consensus        66 ~~~~L~~L~L~~~~l~~-----l~~~~~~l~~L~~L~Ls~~~~l~---~~p-~-------l~~l~~L~~L~L~~~~~l~-  128 (583)
                      .+++|++|++++|.+..     +...+..+++|++|+|++|....   .+| .       +..+++|++|+|++|.... 
T Consensus        30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~  109 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  109 (386)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence            45556666666665553     23335556666666666652211   112 1       1344555555555554433 


Q ss_pred             ---hhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccC------------CCcCEEeccCCC
Q 036772          129 ---EIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEIS------------CNIENLDLSETA  193 (583)
Q Consensus       129 ---~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~------------~~L~~L~L~~~~  193 (583)
                         .++..+..+++|++|+|++|.. +....                  ..++..+            ++|++|++++|.
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l-~~~~~------------------~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~  170 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGL-GPQAG------------------AKIARALQELAVNKKAKNAPPLRSIICGRNR  170 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCC-HHHHH------------------HHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCC-CHHHH------------------HHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence               2444455555555555555322 11100                  0111111            455555555555


Q ss_pred             Cc--ccc---ccccCCCCccEEeeeCCCCCc-----cccccccCCCCCcEEEccCCCCC----CccccccCCCCcccEEE
Q 036772          194 IE--ELP---SSIGNLSRLVRLDLTNCSRLK-----SVSNSLCNLKSLQYLFLSGCLKL----EKLPEEIGNLESLKIML  259 (583)
Q Consensus       194 i~--~lp---~~i~~l~~L~~L~L~~~~~l~-----~lp~~l~~l~~L~~L~l~~c~~l----~~lp~~l~~l~~L~~L~  259 (583)
                      ++  .+|   ..+..+++|++|++++|....     ..+..+..+++|++|++++|...    ..+|..+..+++|+.|+
T Consensus       171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~  250 (386)
T 2ca6_A          171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG  250 (386)
T ss_dssp             CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred             CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence            54  233   345566677777777665432     12335666667777777766542    44555666666666655


Q ss_pred             ccCCccccCccEEEeccCCCcccCccC--CCCCCCCEEEccCCCCcc-----cChhh-hccCcccccccccc
Q 036772          260 ANETAISQNLVDMSLVDCGITELPESL--GRSPSLKFLNLAENDFEK-----IPSSI-KQLSNLLFLTLQNC  323 (583)
Q Consensus       260 l~~~~i~~~L~~L~L~~~~l~~lp~~l--~~l~~L~~L~Ls~n~l~~-----lp~~i-~~l~~L~~L~L~~c  323 (583)
                      +++|.+...         ....++..+  +.+++|+.|+|++|.++.     +|..+ .++++|+.|++++|
T Consensus       251 L~~n~i~~~---------~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          251 LNDCLLSAR---------GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             CTTCCCCHH---------HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             CCCCCCchh---------hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence            555544320         000134444  346777777777777775     66666 55677777777776

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.71  E-value=8.2e-19  Score=193.64  Aligned_cols=262  Identities=19%  Similarity=0.163  Sum_probs=183.4

Q ss_pred             ccccCCCccEEEecCCCCCCCCCCC-CCCCceEEEccCCCh----hhhcccccCCCCccEEeccCCCCCCCCCC-CCCCC
Q 036772           41 LESFFNELRYFQWDGYPLKSLPSKN-IPEHLVSLEMPHSNI----EQLWNGVQNLAALKRLNLSYCKQLSRIPD-LSLAL  114 (583)
Q Consensus        41 l~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l----~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~  114 (583)
                      +..+ ++|+.|++++|.+..+|..+ .+++|++|++.....    ...+..+..+++|+.|+++++ ....+|. +..++
T Consensus       216 ~~~~-~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~  293 (592)
T 3ogk_B          216 ARNC-RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAA  293 (592)
T ss_dssp             HHHC-TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGG
T ss_pred             HhhC-CCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcC
Confidence            3445 58999999999888887655 788999999985322    233455778889999999875 3344453 66788


Q ss_pred             CcCEEeeeCCCCchhh-hhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecC----------CCCccc-----c
Q 036772          115 NLEWLDLVGCASLIEI-HSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGG----------CSNLKR-----F  177 (583)
Q Consensus       115 ~L~~L~L~~~~~l~~~-~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~----------c~~l~~-----~  177 (583)
                      +|++|+|++|...... ...+..+++|+.|+++++..-..++... .+++|++|++++          |..+..     +
T Consensus       294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l  373 (592)
T 3ogk_B          294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL  373 (592)
T ss_dssp             GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHH
T ss_pred             CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHH
Confidence            9999999998844333 3456889999999997432212222222 578899999994          666542     2


Q ss_pred             cccCCCcCEEeccCCCCcc-ccccccC-CCCccEEeeeC---CCCCcc------ccccccCCCCCcEEEccCCCC--CCc
Q 036772          178 LEISCNIENLDLSETAIEE-LPSSIGN-LSRLVRLDLTN---CSRLKS------VSNSLCNLKSLQYLFLSGCLK--LEK  244 (583)
Q Consensus       178 ~~~~~~L~~L~L~~~~i~~-lp~~i~~-l~~L~~L~L~~---~~~l~~------lp~~l~~l~~L~~L~l~~c~~--l~~  244 (583)
                      ....++|+.|++..+.++. .+..++. +++|+.|++++   |..++.      ++..+.++++|++|+++.|..  ...
T Consensus       374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~  453 (592)
T 3ogk_B          374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL  453 (592)
T ss_dssp             HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred             HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence            3446789999998777763 2333444 88999999973   344443      333466788999999987652  222


Q ss_pred             ccccc-CCCCcccEEEccCCcccc-----------CccEEEeccCCCcc--cCccCCCCCCCCEEEccCCCCcc
Q 036772          245 LPEEI-GNLESLKIMLANETAISQ-----------NLVDMSLVDCGITE--LPESLGRSPSLKFLNLAENDFEK  304 (583)
Q Consensus       245 lp~~l-~~l~~L~~L~l~~~~i~~-----------~L~~L~L~~~~l~~--lp~~l~~l~~L~~L~Ls~n~l~~  304 (583)
                      .+..+ ..+++|+.|++++|.+.+           .|+.|++++|.+++  ++..+..+++|++|+|++|+++.
T Consensus       454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            22333 347889999999888754           28999999999765  45556678999999999999873

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.70  E-value=9e-19  Score=183.03  Aligned_cols=243  Identities=18%  Similarity=0.133  Sum_probs=164.1

Q ss_pred             cceecCCcccccCCCccEEEecCCCCCC-----CCCCC-CCCCceEEEccCCChhh----hccc-------ccCCCCccE
Q 036772           33 CKVRHSRCLESFFNELRYFQWDGYPLKS-----LPSKN-IPEHLVSLEMPHSNIEQ----LWNG-------VQNLAALKR   95 (583)
Q Consensus        33 ~~~~l~~~l~~l~~~Lr~L~l~~~~l~~-----lp~~~-~~~~L~~L~L~~~~l~~----l~~~-------~~~l~~L~~   95 (583)
                      ....++..+..+ ++|++|++++|.+..     ++..+ .+++|++|+++++.+..    +|.+       +..+++|++
T Consensus        20 ~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~   98 (386)
T 2ca6_A           20 DEKSVFAVLLED-DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT   98 (386)
T ss_dssp             HHHTTSHHHHHC-SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred             HHHHHHHHHhcC-CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence            345567777777 589999999998765     33333 68899999999975543    2333       478999999


Q ss_pred             EeccCCCCCCC----CC-CCCCCCCcCEEeeeCCCCchhh----hhhccCC---------CCCCEEEccCCCCC-CcCC-
Q 036772           96 LNLSYCKQLSR----IP-DLSLALNLEWLDLVGCASLIEI----HSSIQHL---------NKLVFLNLGRCISL-KSLP-  155 (583)
Q Consensus        96 L~Ls~~~~l~~----~p-~l~~l~~L~~L~L~~~~~l~~~----~~~i~~l---------~~L~~L~L~~c~~l-~~lp-  155 (583)
                      |+|++|.....    ++ .+..+++|++|+|++|......    +..+..+         ++|++|++++|..- ..+| 
T Consensus        99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~  178 (386)
T 2ca6_A           99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE  178 (386)
T ss_dssp             EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred             EECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence            99999976653    34 4778899999999999865433    3334444         88888888885422 1222 


Q ss_pred             --CcC-CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCc------cccccccCCCCccEEeeeCCCCC----cccc
Q 036772          156 --TGI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIE------ELPSSIGNLSRLVRLDLTNCSRL----KSVS  222 (583)
Q Consensus       156 --~~~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~------~lp~~i~~l~~L~~L~L~~~~~l----~~lp  222 (583)
                        ..+ .+++|++|++++                     |.++      -+|..+..+++|+.|+|++|...    ..+|
T Consensus       179 l~~~l~~~~~L~~L~L~~---------------------n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~  237 (386)
T 2ca6_A          179 WAKTFQSHRLLHTVKMVQ---------------------NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  237 (386)
T ss_dssp             HHHHHHHCTTCCEEECCS---------------------SCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             HHHHHHhCCCcCEEECcC---------------------CCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence              122 355555555555                     4444      12335777888888888887754    4567


Q ss_pred             ccccCCCCCcEEEccCCCCCCc----ccccc--CCCCcccEEEccCCccccCccEEEeccCCCcccCccC-CCCCCCCEE
Q 036772          223 NSLCNLKSLQYLFLSGCLKLEK----LPEEI--GNLESLKIMLANETAISQNLVDMSLVDCGITELPESL-GRSPSLKFL  295 (583)
Q Consensus       223 ~~l~~l~~L~~L~l~~c~~l~~----lp~~l--~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l-~~l~~L~~L  295 (583)
                      ..+..+++|++|++++|.....    ++..+  +.+++|+.|++++|.+...         .+..+|..+ ..+++|+.|
T Consensus       238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~---------g~~~l~~~l~~~l~~L~~L  308 (386)
T 2ca6_A          238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD---------AVRTLKTVIDEKMPDLLFL  308 (386)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH---------HHHHHHHHHHHHCTTCCEE
T ss_pred             HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH---------HHHHHHHHHHhcCCCceEE
Confidence            7777888888888888775443    45555  3366666665555554320         000166666 568999999


Q ss_pred             EccCCCCcccC
Q 036772          296 NLAENDFEKIP  306 (583)
Q Consensus       296 ~Ls~n~l~~lp  306 (583)
                      ++++|.++...
T Consensus       309 ~l~~N~l~~~~  319 (386)
T 2ca6_A          309 ELNGNRFSEED  319 (386)
T ss_dssp             ECTTSBSCTTS
T ss_pred             EccCCcCCcch
Confidence            99999998555

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.69  E-value=6.7e-16  Score=151.23  Aligned_cols=172  Identities=25%  Similarity=0.302  Sum_probs=108.2

Q ss_pred             CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeC
Q 036772           46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVG  123 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~  123 (583)
                      ...+.++++++.++++|..+. ++|++|++++|.+..++. .+.++++|++|+|++|......+. +..+++|++|+|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~   92 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN   92 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence            357788888888888887654 678888888888887655 477888888888888866555443 67777788888877


Q ss_pred             CCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccc-c
Q 036772          124 CASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPS-S  200 (583)
Q Consensus       124 ~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~  200 (583)
                      |......+..++.+++|++|+|++| .++.+|...  .+++|++|++++                     |.++.+|. .
T Consensus        93 n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~---------------------N~l~~~~~~~  150 (251)
T 3m19_A           93 NQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNT---------------------NQLQSIPAGA  150 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS---------------------SCCCCCCTTT
T ss_pred             CcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcC---------------------CcCCccCHHH
Confidence            6654444455666777777777663 455554432  344444444443                     44444444 3


Q ss_pred             ccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCC
Q 036772          201 IGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCL  240 (583)
Q Consensus       201 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~  240 (583)
                      ++.+++|++|++++|......+..+..+++|++|++++|.
T Consensus       151 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence            5555666666666655443333344555555555555543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.67  E-value=1.6e-18  Score=191.32  Aligned_cols=307  Identities=16%  Similarity=0.115  Sum_probs=195.5

Q ss_pred             CCCCcceEEEecCCCCCCccceecC------------CcccccCCCccEEEecCCCCCCCC-CCC--CCCCceEEEccCC
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHS------------RCLESFFNELRYFQWDGYPLKSLP-SKN--IPEHLVSLEMPHS   78 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~------------~~l~~l~~~Lr~L~l~~~~l~~lp-~~~--~~~~L~~L~L~~~   78 (583)
                      ++++|+.|+++++....  .....|            .....+ ++|++|+++++.+.... ..+  .+++|++|+++++
T Consensus        64 ~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFA--DFNLVPDGWGGYVYPWIEAMSSSY-TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HCTTCCEEEEECSCGGG--GGTCSCTTSCCBCHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             hCCCceEEeccCCCchh--hcccccccccchhhHHHHHHHHhC-CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            68999999999985200  001111            112344 58999999999765321 112  4789999999998


Q ss_pred             -Chhh--hcccccCCCCccEEeccCCCCCCCC----CC-CCCCCCcCEEeeeCCC-Cc--hhhhhhccCCCCCCEEEccC
Q 036772           79 -NIEQ--LWNGVQNLAALKRLNLSYCKQLSRI----PD-LSLALNLEWLDLVGCA-SL--IEIHSSIQHLNKLVFLNLGR  147 (583)
Q Consensus        79 -~l~~--l~~~~~~l~~L~~L~Ls~~~~l~~~----p~-l~~l~~L~~L~L~~~~-~l--~~~~~~i~~l~~L~~L~L~~  147 (583)
                       .+..  ++....++++|++|+|++|......    +. ...+++|++|++++|. ..  ..+...+..+++|+.|++++
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~  220 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR  220 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence             5553  5555668999999999999743322    22 2367899999999986 11  22334446689999999999


Q ss_pred             CCCCCcCCCcC-CCCCccEEEecCCC-------------------Cccc-----------cc---ccCCCcCEEeccCCC
Q 036772          148 CISLKSLPTGI-NLDSLKVLYLGGCS-------------------NLKR-----------FL---EISCNIENLDLSETA  193 (583)
Q Consensus       148 c~~l~~lp~~~-~l~~L~~L~L~~c~-------------------~l~~-----------~~---~~~~~L~~L~L~~~~  193 (583)
                      |..++.+|..+ .+++|++|++.+|.                   .++.           ++   ....+|++|+++++.
T Consensus       221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  300 (594)
T 2p1m_B          221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT  300 (594)
T ss_dssp             TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC
T ss_pred             CCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC
Confidence            87777766655 78889999865442                   2221           12   134688888888887


Q ss_pred             Ccc--ccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccC--------CCCCCc--cccccCCCCcccEEEcc
Q 036772          194 IEE--LPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSG--------CLKLEK--LPEEIGNLESLKIMLAN  261 (583)
Q Consensus       194 i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~--------c~~l~~--lp~~l~~l~~L~~L~l~  261 (583)
                      ++.  ++..+..+++|+.|++++|.....++.....+++|++|++++        |..+..  +......+++|+.|.+.
T Consensus       301 l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~  380 (594)
T 2p1m_B          301 VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF  380 (594)
T ss_dssp             CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh
Confidence            663  333466788888888888722122333334578888888844        233321  11122246778888776


Q ss_pred             CCcccc-----------CccEEEec--c----CCCcccC------ccCCCCCCCCEEEccCCCCc-ccChhhhc-cCccc
Q 036772          262 ETAISQ-----------NLVDMSLV--D----CGITELP------ESLGRSPSLKFLNLAENDFE-KIPSSIKQ-LSNLL  316 (583)
Q Consensus       262 ~~~i~~-----------~L~~L~L~--~----~~l~~lp------~~l~~l~~L~~L~Ls~n~l~-~lp~~i~~-l~~L~  316 (583)
                      .+.+..           .|+.|+++  +    +.+++.|      ..+..+++|+.|++++ .++ ..+..+.. +++|+
T Consensus       381 ~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~  459 (594)
T 2p1m_B          381 CRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKME  459 (594)
T ss_dssp             ESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCC
T ss_pred             cCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhcc
Confidence            666542           37888888  3    3455332      2255677888888876 444 22233443 77788


Q ss_pred             cccccccc
Q 036772          317 FLTLQNCK  324 (583)
Q Consensus       317 ~L~L~~c~  324 (583)
                      .|++++|.
T Consensus       460 ~L~L~~~~  467 (594)
T 2p1m_B          460 MLSVAFAG  467 (594)
T ss_dssp             EEEEESCC
T ss_pred             EeeccCCC
Confidence            88887774

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.67  E-value=1.5e-15  Score=148.81  Aligned_cols=176  Identities=22%  Similarity=0.326  Sum_probs=96.9

Q ss_pred             CCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEcc
Q 036772           68 EHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLG  146 (583)
Q Consensus        68 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~  146 (583)
                      ...++++++++.++.+|.++.  ++|+.|+|++|......+ .+..+++|++|+|++|......+..+..+++|+.|+|+
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~   91 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA   91 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence            345677777777777776654  577777777776555444 36667777777777765544444455666666666666


Q ss_pred             CCCCCCcCCCcC--CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCcccccc-ccCCCCccEEeeeCCCCCccccc
Q 036772          147 RCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSS-IGNLSRLVRLDLTNCSRLKSVSN  223 (583)
Q Consensus       147 ~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~  223 (583)
                      +| .++.+|...  .+++|++|+++                     +|.++.+|.. +..+++|+.|++++|......+ 
T Consensus        92 ~n-~l~~~~~~~~~~l~~L~~L~L~---------------------~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-  148 (251)
T 3m19_A           92 NN-QLASLPLGVFDHLTQLDKLYLG---------------------GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-  148 (251)
T ss_dssp             TS-CCCCCCTTTTTTCTTCCEEECC---------------------SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-
T ss_pred             CC-cccccChhHhcccCCCCEEEcC---------------------CCcCCCcChhHhccCCcccEEECcCCcCCccCH-
Confidence            53 333443322  33333333333                     2344444432 3445555555555543332222 


Q ss_pred             cccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccC-ccCCCCCCCCEEEccCCCC
Q 036772          224 SLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNLAENDF  302 (583)
Q Consensus       224 ~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l  302 (583)
                                             ..+..+++|+.|++++|.+.              .++ ..+..+++|+.|++++|.+
T Consensus       149 -----------------------~~~~~l~~L~~L~L~~N~l~--------------~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          149 -----------------------GAFDKLTNLQTLSLSTNQLQ--------------SVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             -----------------------TTTTTCTTCCEEECCSSCCS--------------CCCTTTTTTCTTCCEEECCSCCB
T ss_pred             -----------------------HHcCcCcCCCEEECCCCcCC--------------ccCHHHHhCCCCCCEEEeeCCce
Confidence                                   23444444444444443332              244 3567777888888888887


Q ss_pred             ccc
Q 036772          303 EKI  305 (583)
Q Consensus       303 ~~l  305 (583)
                      ..-
T Consensus       192 ~c~  194 (251)
T 3m19_A          192 DCS  194 (251)
T ss_dssp             CTT
T ss_pred             eCC
Confidence            643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.66  E-value=6.6e-16  Score=168.21  Aligned_cols=189  Identities=21%  Similarity=0.287  Sum_probs=137.2

Q ss_pred             CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCC
Q 036772           46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCA  125 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~  125 (583)
                      .+|+.|+++++.++.+|..+ +++|++|++++|.++.+|   ..+++|++|+|++|.+.. +|.+..  +|++|+|++|.
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~N~  131 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVDNNQ  131 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCSSC
T ss_pred             CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECCCCc
Confidence            37888888888888888765 377888888888888887   457888888888886544 666443  88888888876


Q ss_pred             CchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCC
Q 036772          126 SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLS  205 (583)
Q Consensus       126 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~  205 (583)
                      ... +|.   .+++|+.|+|++ +.++.+|.  .+++|++|++++|. +..+|....+|+.|++++|.++.+|. +..  
T Consensus       132 l~~-lp~---~l~~L~~L~Ls~-N~l~~lp~--~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~L~~lp~-~~~--  200 (571)
T 3cvr_A          132 LTM-LPE---LPALLEYINADN-NQLTMLPE--LPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNLLESLPA-VPV--  200 (571)
T ss_dssp             CSC-CCC---CCTTCCEEECCS-SCCSCCCC--CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCC-CC---
T ss_pred             CCC-CCC---cCccccEEeCCC-CccCcCCC--cCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCCCCchhh-HHH--
Confidence            443 555   678888888887 45666776  57788888888864 44455534678888888888888877 544  


Q ss_pred             Cc-------cEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCC
Q 036772          206 RL-------VRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLE  253 (583)
Q Consensus       206 ~L-------~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~  253 (583)
                      +|       +.|++++|.. ..+|..+..+++|+.|++++|...+..|..+..+.
T Consensus       201 ~L~~~~~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          201 RNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             -------CCEEEECCSSCC-CCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             hhhcccccceEEecCCCcc-eecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            66       8888887654 35777777788888888888777776776655543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.66  E-value=6.3e-16  Score=168.40  Aligned_cols=189  Identities=17%  Similarity=0.211  Sum_probs=157.5

Q ss_pred             CcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEE
Q 036772           17 RLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRL   96 (583)
Q Consensus        17 ~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L   96 (583)
                      +|+.|++++|.+      ..+|..+   +++|++|++++|.++.+|  ..+++|++|++++|.++.+|. +..  +|++|
T Consensus        60 ~L~~L~Ls~n~L------~~lp~~l---~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L  125 (571)
T 3cvr_A           60 QFSELQLNRLNL------SSLPDNL---PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHL  125 (571)
T ss_dssp             TCSEEECCSSCC------SCCCSCC---CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEE
T ss_pred             CccEEEeCCCCC------CccCHhH---cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEE
Confidence            899999998853      3477655   368999999999999999  457899999999999999988 655  99999


Q ss_pred             eccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCccc
Q 036772           97 NLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKR  176 (583)
Q Consensus        97 ~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~  176 (583)
                      +|++|.+.. +|.  .+++|+.|+|++|... .+|.   .+++|+.|+|++| .++.+|. +. ++|+.|+|++| .+..
T Consensus       126 ~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N-~L~~lp~-l~-~~L~~L~Ls~N-~L~~  194 (571)
T 3cvr_A          126 DVDNNQLTM-LPE--LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNN-QLTFLPE-LP-ESLEALDVSTN-LLES  194 (571)
T ss_dssp             ECCSSCCSC-CCC--CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSS-CCSCCCC-CC-TTCCEEECCSS-CCSS
T ss_pred             ECCCCcCCC-CCC--cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCC-CCCCcch-hh-CCCCEEECcCC-CCCc
Confidence            999997554 776  7899999999998754 4665   6789999999995 6777888 65 99999999997 5667


Q ss_pred             ccccCCCc-------CEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCC
Q 036772          177 FLEISCNI-------ENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKS  230 (583)
Q Consensus       177 ~~~~~~~L-------~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~  230 (583)
                      +|....+|       +.|++++|.++.+|..+..+++|+.|++++|......|..+..+..
T Consensus       195 lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          195 LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             hhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            77744578       9999999999999999999999999999999988888877766543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.66  E-value=2.3e-15  Score=154.97  Aligned_cols=220  Identities=20%  Similarity=0.237  Sum_probs=148.4

Q ss_pred             eEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCchhhhh-hccCCCCCCEEEccC
Q 036772           71 VSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGCASLIEIHS-SIQHLNKLVFLNLGR  147 (583)
Q Consensus        71 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~~~-~i~~l~~L~~L~L~~  147 (583)
                      ++++.++++++++|.++  .++++.|+|++|++. .+|  .|..+++|++|+|++|.....++. .+.++++|+.+...+
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            46777888888888766  367888888888644 444  377888888888888776665653 567777777655555


Q ss_pred             CCCCCcCCCcC--CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccc-cccCCCCccEEeeeCCCCCccccc-
Q 036772          148 CISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVSN-  223 (583)
Q Consensus       148 c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~-  223 (583)
                      ++.++.++...  .+++|++|++++                     |.++.+|. .+....++..|++.++..+..++. 
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~---------------------n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~  147 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISN---------------------TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN  147 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEE---------------------ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT
T ss_pred             CCcccccCchhhhhccccccccccc---------------------cccccCCchhhcccchhhhhhhcccccccccccc
Confidence            56676665433  566666666665                     44555443 234556778888887766666554 


Q ss_pred             cccCCC-CCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCc-cCCCCCCCCEEEccCCC
Q 036772          224 SLCNLK-SLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPE-SLGRSPSLKFLNLAEND  301 (583)
Q Consensus       224 ~l~~l~-~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~  301 (583)
                      .+..+. .++.|++++|. +..+|.......+|+.+.+.+             ++.++.+|. .+..+++|+.|+|++|+
T Consensus       148 ~f~~~~~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~-------------~n~l~~i~~~~f~~l~~L~~LdLs~N~  213 (350)
T 4ay9_X          148 SFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSD-------------NNNLEELPNDVFHGASGPVILDISRTR  213 (350)
T ss_dssp             SSTTSBSSCEEEECCSSC-CCEECTTSSTTEEEEEEECTT-------------CTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred             chhhcchhhhhhcccccc-ccCCChhhccccchhHHhhcc-------------CCcccCCCHHHhccCcccchhhcCCCC
Confidence            445543 57888888864 445555544445555554432             234556875 57899999999999999


Q ss_pred             CcccChhhhccCcccccccccccccccCC
Q 036772          302 FEKIPSSIKQLSNLLFLTLQNCKRLQSLP  330 (583)
Q Consensus       302 l~~lp~~i~~l~~L~~L~L~~c~~L~~lp  330 (583)
                      ++.+|..  .+.+|+.|.+.++..++++|
T Consensus       214 l~~lp~~--~~~~L~~L~~l~~~~l~~lP  240 (350)
T 4ay9_X          214 IHSLPSY--GLENLKKLRARSTYNLKKLP  240 (350)
T ss_dssp             CCCCCSS--SCTTCCEEECTTCTTCCCCC
T ss_pred             cCccChh--hhccchHhhhccCCCcCcCC
Confidence            9999864  35667777777777777776

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.65  E-value=2.4e-16  Score=159.44  Aligned_cols=217  Identities=17%  Similarity=0.164  Sum_probs=148.4

Q ss_pred             CCcCEEeeeCCCCchhh-hh--hccCCCCCCEEEccCCCCCCcCCCcC---CCCCccEEEecCCCCccccc-------cc
Q 036772          114 LNLEWLDLVGCASLIEI-HS--SIQHLNKLVFLNLGRCISLKSLPTGI---NLDSLKVLYLGGCSNLKRFL-------EI  180 (583)
Q Consensus       114 ~~L~~L~L~~~~~l~~~-~~--~i~~l~~L~~L~L~~c~~l~~lp~~~---~l~~L~~L~L~~c~~l~~~~-------~~  180 (583)
                      ..++.|.+.++...... ..  ....+++|++|++++|...+..|..+   .+++|++|++++|..-...+       ..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            34666666665543211 11  11234567777777765555555542   47777778887765443222       23


Q ss_pred             CCCcCEEeccCCCCcccc-ccccCCCCccEEeeeCCCCCcc--cc--ccccCCCCCcEEEccCCCCCCcccc----ccCC
Q 036772          181 SCNIENLDLSETAIEELP-SSIGNLSRLVRLDLTNCSRLKS--VS--NSLCNLKSLQYLFLSGCLKLEKLPE----EIGN  251 (583)
Q Consensus       181 ~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~--lp--~~l~~l~~L~~L~l~~c~~l~~lp~----~l~~  251 (583)
                      ..+|+.|++++|.+..++ ..++.+++|++|++++|.....  ++  ..+..+++|++|++++|.. ..++.    .++.
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhc
Confidence            568888888889998776 4688999999999999986543  32  3346899999999999865 44444    2456


Q ss_pred             CCcccEEEccCCccccCccEEEeccCCCccc-CccCCCC---CCCCEEEccCCCCcccChhhhccCcccccccccccccc
Q 036772          252 LESLKIMLANETAISQNLVDMSLVDCGITEL-PESLGRS---PSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQ  327 (583)
Q Consensus       252 l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~l-p~~l~~l---~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~  327 (583)
                      +++|++|++++|.+.              ++ |..+..+   ++|++|+|++|.++.+|..+.  ++|+.|++++| +++
T Consensus       223 l~~L~~L~Ls~N~l~--------------~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N-~l~  285 (310)
T 4glp_A          223 GVQPHSLDLSHNSLR--------------ATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSN-RLN  285 (310)
T ss_dssp             TCCCSSEECTTSCCC--------------CCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSC-CCC
T ss_pred             CCCCCEEECCCCCCC--------------ccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCC-cCC
Confidence            677776666665544              44 7666666   799999999999999998774  89999999998 566


Q ss_pred             cCCCCCCCCeeeeeCCcCcccccCccccccccccc
Q 036772          328 SLPELPCGSNIFARYCTSLETLSNLSTLFTRSSEL  362 (583)
Q Consensus       328 ~lp~lp~~~~l~~~~c~sL~~l~~l~~l~~~~~~~  362 (583)
                      .+|.              +..+++|+.+.+.+|++
T Consensus       286 ~~~~--------------~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          286 RAPQ--------------PDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             SCCC--------------TTSCCCCSCEECSSTTT
T ss_pred             CCch--------------hhhCCCccEEECcCCCC
Confidence            5542              34456666777777765

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.65  E-value=1.3e-17  Score=172.82  Aligned_cols=122  Identities=20%  Similarity=0.205  Sum_probs=76.8

Q ss_pred             EEEecCCCCCCCCCCC--CCCCceEEEccCCChhhhc-----ccccCCC-CccEEeccCCCCCCCCC-CCCCC-----CC
Q 036772           50 YFQWDGYPLKSLPSKN--IPEHLVSLEMPHSNIEQLW-----NGVQNLA-ALKRLNLSYCKQLSRIP-DLSLA-----LN  115 (583)
Q Consensus        50 ~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~l~~l~-----~~~~~l~-~L~~L~Ls~~~~l~~~p-~l~~l-----~~  115 (583)
                      +++++.+.+....+.+  .+++|++|++++|.+...+     ..+..++ +|++|+|++|......+ .+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            4566777766543333  4455888888888887665     4567777 78888888886554433 23332     78


Q ss_pred             cCEEeeeCCCCchhhhh----hccCC-CCCCEEEccCCCCCCcCCCcC------C-CCCccEEEecCCC
Q 036772          116 LEWLDLVGCASLIEIHS----SIQHL-NKLVFLNLGRCISLKSLPTGI------N-LDSLKVLYLGGCS  172 (583)
Q Consensus       116 L~~L~L~~~~~l~~~~~----~i~~l-~~L~~L~L~~c~~l~~lp~~~------~-l~~L~~L~L~~c~  172 (583)
                      |++|+|++|......+.    .+..+ ++|+.|++++|. ++..+...      . .++|++|++++|.
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence            88888888775444333    34444 788888887754 44444311      1 2467777777653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.62  E-value=1.2e-16  Score=165.37  Aligned_cols=243  Identities=13%  Similarity=0.101  Sum_probs=144.9

Q ss_pred             EEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCC-----CCCCCC-CcCEEeeeCCCCchhhhhhccCC-----CC
Q 036772           72 SLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIP-----DLSLAL-NLEWLDLVGCASLIEIHSSIQHL-----NK  139 (583)
Q Consensus        72 ~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p-----~l~~l~-~L~~L~L~~~~~l~~~~~~i~~l-----~~  139 (583)
                      .+++++|.+.... ..+...++|++|+|++|......+     .+..++ +|++|+|++|......+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            4678888888544 444555569999999997554432     366777 89999999987665545555443     89


Q ss_pred             CCEEEccCCCCCCcCCCc-----C-CC-CCccEEEecCCCCcccccc-------c-CCCcCEEeccCCCCc-----cccc
Q 036772          140 LVFLNLGRCISLKSLPTG-----I-NL-DSLKVLYLGGCSNLKRFLE-------I-SCNIENLDLSETAIE-----ELPS  199 (583)
Q Consensus       140 L~~L~L~~c~~l~~lp~~-----~-~l-~~L~~L~L~~c~~l~~~~~-------~-~~~L~~L~L~~~~i~-----~lp~  199 (583)
                      |++|+|++|. ++..+..     + .+ ++|++|++++|..-...+.       . ..+|++|++++|.++     .++.
T Consensus        82 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           82 VTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             CCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             ccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            9999999864 5544332     2 33 7888888888753221111       1 247777777777776     3444


Q ss_pred             cccCCC-CccEEeeeCCCCCccccc----cccCC-CCCcEEEccCCCCCC----ccccccCC-CCcccEEEccCCccccC
Q 036772          200 SIGNLS-RLVRLDLTNCSRLKSVSN----SLCNL-KSLQYLFLSGCLKLE----KLPEEIGN-LESLKIMLANETAISQN  268 (583)
Q Consensus       200 ~i~~l~-~L~~L~L~~~~~l~~lp~----~l~~l-~~L~~L~l~~c~~l~----~lp~~l~~-l~~L~~L~l~~~~i~~~  268 (583)
                      .+..++ +|++|++++|......+.    .+... ++|++|++++|....    .++..+.. .++|+.|++++|.+.+.
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  240 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP  240 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence            445554 777777777765444333    23334 477777777765332    13333333 23555555555443320


Q ss_pred             ccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcc--------cChhhhccCccccccccccc
Q 036772          269 LVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEK--------IPSSIKQLSNLLFLTLQNCK  324 (583)
Q Consensus       269 L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~--------lp~~i~~l~~L~~L~L~~c~  324 (583)
                               ....+...+..+++|+.|++++|.+..        ++..+..+++|+.|++++++
T Consensus       241 ---------~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          241 ---------SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             ---------CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             ---------HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence                     000122345667777788877777332        23345566677777777663

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.61  E-value=5.2e-15  Score=148.24  Aligned_cols=37  Identities=27%  Similarity=0.317  Sum_probs=23.6

Q ss_pred             CCCCCCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772          286 LGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       286 l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c  323 (583)
                      +..+++|+.|++++|.++.+|. +..+++|+.|++++|
T Consensus       174 l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          174 LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQ  210 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEE
T ss_pred             hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCC
Confidence            5556666666666666666653 566666666666665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.58  E-value=1.2e-14  Score=137.82  Aligned_cols=175  Identities=22%  Similarity=0.251  Sum_probs=100.3

Q ss_pred             cEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCCC
Q 036772           49 RYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCAS  126 (583)
Q Consensus        49 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~~  126 (583)
                      +.++.+++.++.+|..+ +++|++|++++|+++.++.. +..+++|++|++++|+.....+. +..+++|++|++++|..
T Consensus        10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            45566666666666543 34677777777776666544 56677777777777654433332 56666777777776654


Q ss_pred             chhhhhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCcccccc-ccC
Q 036772          127 LIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSS-IGN  203 (583)
Q Consensus       127 l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~-i~~  203 (583)
                      ....+..++.+++|+.|++++| .++.+|...  .+++|++|++++                     |.++.+|.. +..
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~---------------------N~l~~~~~~~~~~  146 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQ---------------------NQLKSVPDGVFDR  146 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS---------------------SCCSCCCTTTTTT
T ss_pred             CccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCC---------------------CccceeCHHHhcc
Confidence            3333334566666777776663 444444432  445555554444                     344444443 556


Q ss_pred             CCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCC
Q 036772          204 LSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLE  253 (583)
Q Consensus       204 l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~  253 (583)
                      +++|+.|++++|...       +.++.|+.|+++.+...+.+|+.++.++
T Consensus       147 l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          147 LTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             CTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             CCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence            666777777666432       3345666666666666666666555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.58  E-value=7e-15  Score=147.32  Aligned_cols=166  Identities=22%  Similarity=0.226  Sum_probs=101.0

Q ss_pred             CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCC
Q 036772           46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCA  125 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~  125 (583)
                      ++|++|+++++.++.+|....+++|++|++++|.++.++. +..+++|++|++++|. +..++.+..+++|++|++++|.
T Consensus        46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~  123 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNG  123 (291)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSC
T ss_pred             CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCCc
Confidence            4677777777777777654466777777777777776655 6777777777777774 3445566677777777777765


Q ss_pred             CchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCC
Q 036772          126 SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLS  205 (583)
Q Consensus       126 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~  205 (583)
                      ... + +.+..+++|+.|++++| .++.++....+++|++|++++                     |.++.+++ +..++
T Consensus       124 i~~-~-~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~---------------------N~l~~~~~-l~~l~  178 (291)
T 1h6t_A          124 ISD-I-NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLED---------------------NQISDIVP-LAGLT  178 (291)
T ss_dssp             CCC-C-GGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCS---------------------SCCCCCGG-GTTCT
T ss_pred             CCC-C-hhhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccC---------------------Cccccchh-hcCCC
Confidence            332 2 34666677777777663 344442211455555555544                     45555544 55666


Q ss_pred             CccEEeeeCCCCCccccccccCCCCCcEEEccCCC
Q 036772          206 RLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCL  240 (583)
Q Consensus       206 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~  240 (583)
                      +|+.|++++|... .++ .+..+++|+.|++++|.
T Consensus       179 ~L~~L~L~~N~i~-~l~-~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          179 KLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             TCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEEEE
T ss_pred             ccCEEECCCCcCC-CCh-hhccCCCCCEEECcCCc
Confidence            6666666665432 233 25566666666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.57  E-value=6.8e-15  Score=161.86  Aligned_cols=174  Identities=22%  Similarity=0.287  Sum_probs=80.5

Q ss_pred             cCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEE
Q 036772           88 QNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLY  167 (583)
Q Consensus        88 ~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~  167 (583)
                      ..+++|+.|++++|. +..++.+..+++|+.|+|++|.... ++. +..+++|+.|+|++| .+..+|....+++|+.|+
T Consensus        40 ~~L~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~  115 (605)
T 1m9s_A           40 NELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFLDEN-KIKDLSSLKDLKKLKSLS  115 (605)
T ss_dssp             HHHTTCCCCBCTTCC-CCCCTTGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEECCSS-CCCCCTTSTTCTTCCEEE
T ss_pred             hcCCCCCEEECcCCC-CCCChHHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEECcCC-CCCCChhhccCCCCCEEE
Confidence            344555555555553 3334445555555555555544322 222 555556666666553 344444222455555555


Q ss_pred             ecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcccc
Q 036772          168 LGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPE  247 (583)
Q Consensus       168 L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~  247 (583)
                      |++|                     .+..++ .+..+++|+.|+|++|.... + ..+..+++|+.|+|++|......| 
T Consensus       116 Ls~N---------------------~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~~~~-  170 (605)
T 1m9s_A          116 LEHN---------------------GISDIN-GLVHLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP-  170 (605)
T ss_dssp             CTTS---------------------CCCCCG-GGGGCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred             ecCC---------------------CCCCCc-cccCCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCCchh-
Confidence            5443                     222222 24444455555555443322 1 334445555555555543332222 


Q ss_pred             ccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccC
Q 036772          248 EIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIP  306 (583)
Q Consensus       248 ~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp  306 (583)
                       +..+++|+.|++++|.+.              ++| .+..+++|+.|+|++|.+...|
T Consensus       171 -l~~l~~L~~L~Ls~N~i~--------------~l~-~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          171 -LAGLTKLQNLYLSKNHIS--------------DLR-ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             -GTTCTTCCEEECCSSCCC--------------BCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred             -hccCCCCCEEECcCCCCC--------------CCh-HHccCCCCCEEEccCCcCcCCc
Confidence             444444444444443332              232 3555666666666666655443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.57  E-value=1.1e-14  Score=137.01  Aligned_cols=122  Identities=21%  Similarity=0.229  Sum_probs=63.5

Q ss_pred             CccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCC-CCCCCCCCCcCEEeeeCCC
Q 036772           47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSR-IPDLSLALNLEWLDLVGCA  125 (583)
Q Consensus        47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~-~p~l~~l~~L~~L~L~~~~  125 (583)
                      +|++|+++++.++.+|....+++|++|++++|.++.++ .+..+++|++|++++|..... .+.++.+++|++|++++|.
T Consensus        45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  123 (197)
T 4ezg_A           45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA  123 (197)
T ss_dssp             TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB
T ss_pred             CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc
Confidence            56666666666665553235555666666655554442 455556666666665544432 2245555666666666655


Q ss_pred             CchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEec
Q 036772          126 SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLG  169 (583)
Q Consensus       126 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~  169 (583)
                      .....+..++.+++|+.|++++|..++.+|....+++|++|+++
T Consensus       124 i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~  167 (197)
T 4ezg_A          124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQ  167 (197)
T ss_dssp             CBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECT
T ss_pred             cCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECC
Confidence            54445555555555555555554434444321133444444333

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.56  E-value=1.6e-14  Score=158.82  Aligned_cols=169  Identities=21%  Similarity=0.230  Sum_probs=99.6

Q ss_pred             cccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEee
Q 036772           42 ESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDL  121 (583)
Q Consensus        42 ~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L  121 (583)
                      ..+ ++|+.|+++++.+..+|....+++|++|+|++|.+..++. +..+++|+.|+|++|. +..++.+..+++|++|+|
T Consensus        40 ~~L-~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~L  116 (605)
T 1m9s_A           40 NEL-NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSL  116 (605)
T ss_dssp             HHH-TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEEC
T ss_pred             hcC-CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEe
Confidence            344 4777777877777777754467777777777777777665 7777777777777774 344566777777777777


Q ss_pred             eCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccc
Q 036772          122 VGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSI  201 (583)
Q Consensus       122 ~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i  201 (583)
                      ++|.... + +.+..+++|+.|+|++| .+..++....+++|+.|+|++                     |.+..+++ +
T Consensus       117 s~N~l~~-l-~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~---------------------N~l~~~~~-l  171 (605)
T 1m9s_A          117 EHNGISD-I-NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLED---------------------NQISDIVP-L  171 (605)
T ss_dssp             TTSCCCC-C-GGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCS---------------------SCCCCCGG-G
T ss_pred             cCCCCCC-C-ccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcC---------------------CcCCCchh-h
Confidence            7765432 2 34666777777777664 344442211455555555544                     33444333 4


Q ss_pred             cCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCC
Q 036772          202 GNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCL  240 (583)
Q Consensus       202 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~  240 (583)
                      ..+++|+.|+|++|.... ++ .+..+++|+.|++++|.
T Consensus       172 ~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          172 AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEE
T ss_pred             ccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCc
Confidence            455555555555543322 22 34444555555555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.55  E-value=4.1e-14  Score=134.18  Aligned_cols=166  Identities=23%  Similarity=0.181  Sum_probs=125.8

Q ss_pred             ceecCCcccccCCCccEEEecCCCCCCCCCCC--CCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCCCCC-
Q 036772           34 KVRHSRCLESFFNELRYFQWDGYPLKSLPSKN--IPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSRIPD-  109 (583)
Q Consensus        34 ~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~-  109 (583)
                      ...+|.+   ++++|++|+++++.++.+|...  .+++|++|++++|+++.++.. +..+++|++|+|++|......+. 
T Consensus        19 l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~   95 (208)
T 2o6s_A           19 RTSVPTG---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGV   95 (208)
T ss_dssp             CSSCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ccCCCCC---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhH
Confidence            3445544   3568999999999999998753  789999999999999988765 68999999999999976654443 


Q ss_pred             CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCc-C-CCCCccEEEecCCCCcccccccCCCcCEE
Q 036772          110 LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTG-I-NLDSLKVLYLGGCSNLKRFLEISCNIENL  187 (583)
Q Consensus       110 l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L  187 (583)
                      +..+++|++|++++|......+..++.+++|+.|++++| .++.+|.. + .+++|++|++++|..              
T Consensus        96 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~--------------  160 (208)
T 2o6s_A           96 FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW--------------  160 (208)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB--------------
T ss_pred             hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCe--------------
Confidence            789999999999998765444456899999999999995 56677765 3 688888888888632              


Q ss_pred             eccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCC
Q 036772          188 DLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKS  230 (583)
Q Consensus       188 ~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~  230 (583)
                                   .+.+++|+.|+++.|.....+|..++.++.
T Consensus       161 -------------~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          161 -------------DCTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             -------------CCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             -------------ecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence                         123445666666665555556655554443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.54  E-value=1.5e-14  Score=136.04  Aligned_cols=81  Identities=19%  Similarity=0.278  Sum_probs=48.3

Q ss_pred             CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEc
Q 036772           66 IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNL  145 (583)
Q Consensus        66 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L  145 (583)
                      .+++|++|++++|.++.++ ++..+++|++|++++| ....++.+..+++|++|++++|......+..++.+++|+.|++
T Consensus        42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            4556666666666666665 5666666666666666 3444455666666666666665554444555555555555555


Q ss_pred             cCC
Q 036772          146 GRC  148 (583)
Q Consensus       146 ~~c  148 (583)
                      ++|
T Consensus       120 s~n  122 (197)
T 4ezg_A          120 SHS  122 (197)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            553

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.53  E-value=1.4e-16  Score=174.14  Aligned_cols=189  Identities=17%  Similarity=0.163  Sum_probs=122.8

Q ss_pred             CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCC-------------CCCcCCCcC-CCCCccEEE-ecCCC--
Q 036772          110 LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCI-------------SLKSLPTGI-NLDSLKVLY-LGGCS--  172 (583)
Q Consensus       110 l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~-------------~l~~lp~~~-~l~~L~~L~-L~~c~--  172 (583)
                      +...++|+.|+|++|. +..+|.+++.+++|+.|+++++.             ..+..|..+ .+++|+.|+ ++.+.  
T Consensus       345 ~~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          345 SATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             CSTTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             cccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            3556777777777754 45777778778888877775532             223333333 566666666 33210  


Q ss_pred             ----------CcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCC
Q 036772          173 ----------NLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKL  242 (583)
Q Consensus       173 ----------~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l  242 (583)
                                .+..++.  ..|+.|++++|.++.+|. ++.+++|+.|++++|... .+|..++++++|+.|++++|...
T Consensus       424 ~L~~l~l~~n~i~~l~~--~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  499 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEY--ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE  499 (567)
T ss_dssp             HHHHHHHHHHHHHHHHH--TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             hhhhhhhhcccccccCc--cCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence                      1122221  257778888888888876 788888888888887654 67777888888888888876544


Q ss_pred             CccccccCCCCcccEEEccCCccccCccEEEeccCCCccc--CccCCCCCCCCEEEccCCCCcccChhh----hccCccc
Q 036772          243 EKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITEL--PESLGRSPSLKFLNLAENDFEKIPSSI----KQLSNLL  316 (583)
Q Consensus       243 ~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~l--p~~l~~l~~L~~L~Ls~n~l~~lp~~i----~~l~~L~  316 (583)
                       .+| .++.+++|+.|++++|.+.              ++  |..++.+++|+.|+|++|.++.+|+.+    ..+++|+
T Consensus       500 -~lp-~l~~l~~L~~L~Ls~N~l~--------------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~  563 (567)
T 1dce_A          500 -NVD-GVANLPRLQELLLCNNRLQ--------------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS  563 (567)
T ss_dssp             -CCG-GGTTCSSCCEEECCSSCCC--------------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred             -CCc-ccCCCCCCcEEECCCCCCC--------------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence             356 6777777666655555543              34  677777888888888888877666533    2356666


Q ss_pred             ccc
Q 036772          317 FLT  319 (583)
Q Consensus       317 ~L~  319 (583)
                      .|+
T Consensus       564 ~L~  566 (567)
T 1dce_A          564 SIL  566 (567)
T ss_dssp             EEE
T ss_pred             ccC
Confidence            654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.49  E-value=3.4e-13  Score=129.20  Aligned_cols=100  Identities=17%  Similarity=0.113  Sum_probs=70.8

Q ss_pred             ccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcc--cccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCC
Q 036772           48 LRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN--GVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGC  124 (583)
Q Consensus        48 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~--~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~  124 (583)
                      -+.++++++.++.+|..+ +..+++|++++|.++.++.  .+..+++|++|+|++|++....+ .|..+++|++|+|++|
T Consensus        13 ~~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TTEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            457888888888888654 4557788888888887743  26788888888888886554444 4777777777777777


Q ss_pred             CCchhhhhhccCCCCCCEEEccCC
Q 036772          125 ASLIEIHSSIQHLNKLVFLNLGRC  148 (583)
Q Consensus       125 ~~l~~~~~~i~~l~~L~~L~L~~c  148 (583)
                      ......+..++.+++|++|+|++|
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N  115 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSN  115 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTS
T ss_pred             ccCccCHhHhcCCcCCCEEECCCC
Confidence            655444555667777777777664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.48  E-value=3.3e-13  Score=129.26  Aligned_cols=129  Identities=22%  Similarity=0.314  Sum_probs=89.1

Q ss_pred             CCcCEEeccCCCCccccc-cccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEc
Q 036772          182 CNIENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLA  260 (583)
Q Consensus       182 ~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  260 (583)
                      .+++.|++++|.++.++. .+..+++|+.|++++|......|..+.++++|++|++++|......+..+..+++|+.|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            356666666677777665 5777788888888887766666777788888888888876554333344566777666666


Q ss_pred             cCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccCh-hhhccCcccccccccc
Q 036772          261 NETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPS-SIKQLSNLLFLTLQNC  323 (583)
Q Consensus       261 ~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~~c  323 (583)
                      ++|.+...             .|..+..+++|+.|+|++|.++.++. .+..+++|+.|++++|
T Consensus       112 ~~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          112 NANKINCL-------------RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN  162 (220)
T ss_dssp             CSSCCCCC-------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCCEe-------------CHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence            66554431             24567778888888888888887764 3667777777777776

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.48  E-value=8.9e-14  Score=137.08  Aligned_cols=172  Identities=20%  Similarity=0.259  Sum_probs=97.0

Q ss_pred             CCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEcc
Q 036772           67 PEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLG  146 (583)
Q Consensus        67 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~  146 (583)
                      +.+++.+++.++.++.++ .+..+++|++|++++|. +..++.+..+++|++|++++|.. ..++. ++.+++|+.|+++
T Consensus        18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~L~~N~i-~~~~~-l~~l~~L~~L~L~   93 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSHNQI-SDLSP-LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSC-CCCCTTGGGCTTCCEEECCSSCC-CCCGG-GTTCSSCCEEECC
T ss_pred             HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCC-cccchHHhhCCCCCEEECCCCcc-CCChh-hccCCCCCEEECC
Confidence            344555566666666655 45667777777777763 44555666677777777776643 33333 6667777777776


Q ss_pred             CCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCcccccccc
Q 036772          147 RCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLC  226 (583)
Q Consensus       147 ~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~  226 (583)
                      +| .++.+|.... ++                     |+.|++++|.++.++ .++.+++|+.|++++|.... ++ .+.
T Consensus        94 ~N-~l~~l~~~~~-~~---------------------L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~  147 (263)
T 1xeu_A           94 RN-RLKNLNGIPS-AC---------------------LSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS-IV-MLG  147 (263)
T ss_dssp             SS-CCSCCTTCCC-SS---------------------CCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-CG-GGG
T ss_pred             CC-ccCCcCcccc-Cc---------------------ccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC-Ch-HHc
Confidence            63 4444443212 33                     344444445555554 35666666666666654322 22 334


Q ss_pred             CCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccC
Q 036772          227 NLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIP  306 (583)
Q Consensus       227 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp  306 (583)
                      .+++|++|++++                        |.+.              ++ ..+..+++|+.|++++|.++..|
T Consensus       148 ~l~~L~~L~L~~------------------------N~i~--------------~~-~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          148 FLSKLEVLDLHG------------------------NEIT--------------NT-GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             GCTTCCEEECTT------------------------SCCC--------------BC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             cCCCCCEEECCC------------------------CcCc--------------ch-HHhccCCCCCEEeCCCCcccCCc
Confidence            444444444443                        3322              23 44666778888888888877665


Q ss_pred             h
Q 036772          307 S  307 (583)
Q Consensus       307 ~  307 (583)
                      .
T Consensus       189 ~  189 (263)
T 1xeu_A          189 V  189 (263)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.48  E-value=1.5e-13  Score=142.05  Aligned_cols=99  Identities=21%  Similarity=0.167  Sum_probs=63.4

Q ss_pred             ccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhccc-cc-CCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCC
Q 036772           48 LRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG-VQ-NLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGC  124 (583)
Q Consensus        48 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~-~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~  124 (583)
                      -+.++++++.++.+|..+ ++.++.|+|++|+++.++.. +. .+++|+.|+|++|.+....+ .|..+++|++|+|++|
T Consensus        20 ~~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TTEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            357778888888887644 34577788888887777654 44 67777777777775444333 3666666777776665


Q ss_pred             CCchhhhhhccCCCCCCEEEccC
Q 036772          125 ASLIEIHSSIQHLNKLVFLNLGR  147 (583)
Q Consensus       125 ~~l~~~~~~i~~l~~L~~L~L~~  147 (583)
                      ......+..+..+++|+.|+|++
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~  121 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYN  121 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCS
T ss_pred             cCCcCCHHHhCCCcCCCEEECCC
Confidence            54333333455666666666655

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.48  E-value=3.7e-13  Score=128.94  Aligned_cols=128  Identities=18%  Similarity=0.228  Sum_probs=82.3

Q ss_pred             CcCEEeccCCCCccccc--cccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEc
Q 036772          183 NIENLDLSETAIEELPS--SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLA  260 (583)
Q Consensus       183 ~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  260 (583)
                      .++.|++++|.++.+++  .+..+++|++|++++|......+..+.++++|++|++++|......+..+..+++|++|++
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  112 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML  112 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence            34555556666666632  2567777777777776655544556777777777777776655555555666666666655


Q ss_pred             cCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCccc-ChhhhccCcccccccccc
Q 036772          261 NETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKI-PSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       261 ~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c  323 (583)
                      ++|.+...             .|..+..+++|+.|+|++|.++.+ |..+..+++|+.|++++|
T Consensus       113 s~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  163 (220)
T 2v70_A          113 RSNRITCV-------------GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN  163 (220)
T ss_dssp             TTSCCCCB-------------CTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCCcCCeE-------------CHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence            55554331             245667777777777777777766 556677777777777765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.48  E-value=4.9e-13  Score=128.91  Aligned_cols=77  Identities=19%  Similarity=0.088  Sum_probs=43.4

Q ss_pred             ccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhh-cccccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCC
Q 036772           48 LRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQL-WNGVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCA  125 (583)
Q Consensus        48 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~  125 (583)
                      .+.++.+++.++.+|..+ +++|++|++++|.++.+ +..+..+++|++|+|++|......+. |..+++|++|+|++|.
T Consensus        21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~   99 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ   99 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence            456666677777777543 35666666666666655 33456666666666666643222222 4455555555555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.47  E-value=4.6e-13  Score=138.30  Aligned_cols=129  Identities=22%  Similarity=0.296  Sum_probs=87.8

Q ss_pred             CCCcCEEeccCCCCccccc-cccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEE
Q 036772          181 SCNIENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIML  259 (583)
Q Consensus       181 ~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~  259 (583)
                      +.+|+.|+|++|.++.+++ .+..+++|++|+|++|......+..+..+++|++|++++|......|..+..+++|+.|+
T Consensus        63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  142 (361)
T 2xot_A           63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY  142 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence            3456666666677776664 477778888888888765544455677788888888888766655566677777766666


Q ss_pred             ccCCccccCccEEEeccCCCcccCccC----CCCCCCCEEEccCCCCcccCh-hhhccCc--ccccccccc
Q 036772          260 ANETAISQNLVDMSLVDCGITELPESL----GRSPSLKFLNLAENDFEKIPS-SIKQLSN--LLFLTLQNC  323 (583)
Q Consensus       260 l~~~~i~~~L~~L~L~~~~l~~lp~~l----~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~--L~~L~L~~c  323 (583)
                      +++|.+.              .+|..+    ..+++|+.|+|++|.++.+|. .+..++.  |+.|++++|
T Consensus       143 L~~N~l~--------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          143 LSQNQIS--------------RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             CCSSCCC--------------SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             CCCCcCC--------------eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence            5555543              466543    568888888888888888874 4566665  377777765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.47  E-value=3.4e-13  Score=130.05  Aligned_cols=145  Identities=23%  Similarity=0.213  Sum_probs=65.9

Q ss_pred             cEEEecCCCCcccccc-cCCCcCEEeccCCCCccc-cccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCC
Q 036772          164 KVLYLGGCSNLKRFLE-ISCNIENLDLSETAIEEL-PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLK  241 (583)
Q Consensus       164 ~~L~L~~c~~l~~~~~-~~~~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~  241 (583)
                      +.++.++ ..+..+|. ...+|+.|++++|.++.+ |..+..+++|+.|+|++|......+..+..+++|++|++++|..
T Consensus        22 ~~v~c~~-~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           22 TTVDCRS-KRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL  100 (229)
T ss_dssp             TEEECTT-SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEeEccC-CCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence            3444443 23344443 223555555555555544 33345555555555555443222223344555555555555433


Q ss_pred             CCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccCh-hhhccCccccccc
Q 036772          242 LEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPS-SIKQLSNLLFLTL  320 (583)
Q Consensus       242 l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L  320 (583)
                      ....+..+..+++|+.|++++|.+              +.+|..+..+++|+.|+|++|.++.+|. .+..+++|+.|++
T Consensus       101 ~~l~~~~~~~l~~L~~L~Ls~N~l--------------~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  166 (229)
T 3e6j_A          101 TVLPSAVFDRLVHLKELFMCCNKL--------------TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL  166 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCC--------------CSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CccChhHhCcchhhCeEeccCCcc--------------cccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence            322222334444444333333332              2345555555555555555555554442 2444555555555


Q ss_pred             ccc
Q 036772          321 QNC  323 (583)
Q Consensus       321 ~~c  323 (583)
                      ++|
T Consensus       167 ~~N  169 (229)
T 3e6j_A          167 FGN  169 (229)
T ss_dssp             TTS
T ss_pred             eCC
Confidence            544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.46  E-value=5.4e-13  Score=127.76  Aligned_cols=74  Identities=19%  Similarity=0.257  Sum_probs=39.6

Q ss_pred             cEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeC
Q 036772           49 RYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVG  123 (583)
Q Consensus        49 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~  123 (583)
                      +.++.+++.++.+|..+. ++|++|++++|.++.++. .+..+++|+.|+|++|+.....| .|..+++|++|+|++
T Consensus        14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            456666666776665432 566666666666665544 35555555555555554333222 244444444444444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.46  E-value=7.4e-14  Score=137.67  Aligned_cols=101  Identities=20%  Similarity=0.267  Sum_probs=51.2

Q ss_pred             ccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEe
Q 036772           41 LESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLD  120 (583)
Q Consensus        41 l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~  120 (583)
                      +..+ ++|++|+++++.++.+|....+++|++|++++|.++.++. +..+++|+.|+|++|+. ..+|.+.. ++|++|+
T Consensus        37 ~~~l-~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l-~~l~~~~~-~~L~~L~  112 (263)
T 1xeu_A           37 QKEL-SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRL-KNLNGIPS-ACLSRLF  112 (263)
T ss_dssp             HHHH-TTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCC-SCCTTCCC-SSCCEEE
T ss_pred             hhhc-CcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCcc-CCcCcccc-CcccEEE
Confidence            3444 3566666666666655533355556666666665555544 55556666666665532 23333333 5555555


Q ss_pred             eeCCCCchhhhhhccCCCCCCEEEccC
Q 036772          121 LVGCASLIEIHSSIQHLNKLVFLNLGR  147 (583)
Q Consensus       121 L~~~~~l~~~~~~i~~l~~L~~L~L~~  147 (583)
                      +++|.... ++ .++.+++|+.|++++
T Consensus       113 L~~N~l~~-~~-~l~~l~~L~~L~Ls~  137 (263)
T 1xeu_A          113 LDNNELRD-TD-SLIHLKNLEILSIRN  137 (263)
T ss_dssp             CCSSCCSB-SG-GGTTCTTCCEEECTT
T ss_pred             ccCCccCC-Ch-hhcCcccccEEECCC
Confidence            55543222 21 344444444444444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.46  E-value=1.5e-15  Score=165.92  Aligned_cols=192  Identities=20%  Similarity=0.189  Sum_probs=126.0

Q ss_pred             CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCC-------------CCCCC-CCCCCCCcCEEe-eeCCCCchhh
Q 036772           66 IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQ-------------LSRIP-DLSLALNLEWLD-LVGCASLIEI  130 (583)
Q Consensus        66 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~-------------l~~~p-~l~~l~~L~~L~-L~~~~~l~~~  130 (583)
                      ..++|+.|+|++|.++.+|..+.++++|+.|++++|..             ....| .++.+++|+.|+ ++.+. ...+
T Consensus       347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~L  425 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDDL  425 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHHH
T ss_pred             cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cchh
Confidence            57788999999999999999999999999999876641             11122 234444555554 22211 1111


Q ss_pred             hh------hccC--CCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccc
Q 036772          131 HS------SIQH--LNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSI  201 (583)
Q Consensus       131 ~~------~i~~--l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i  201 (583)
                      +.      .+..  ...|+.|+|++| .++.+|. + .++                     +|+.|++++|.++.+|..+
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~~l~---------------------~L~~L~Ls~N~l~~lp~~~  482 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLL---------------------LVTHLDLSHNRLRALPPAL  482 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GGGGT---------------------TCCEEECCSSCCCCCCGGG
T ss_pred             hhhhhhcccccccCccCceEEEecCC-CCCCCcC-ccccc---------------------cCcEeecCcccccccchhh
Confidence            10      0000  113555555542 3444443 2 333                     5555666667788888888


Q ss_pred             cCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcc-ccccCCCCcccEEEccCCccccCccEEEeccCCCc
Q 036772          202 GNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKL-PEEIGNLESLKIMLANETAISQNLVDMSLVDCGIT  280 (583)
Q Consensus       202 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~  280 (583)
                      +.+++|+.|+|++|.... +| .++.+++|++|++++|...+.. |..++.+++|+.|++++|.+..             
T Consensus       483 ~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~-------------  547 (567)
T 1dce_A          483 AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-------------  547 (567)
T ss_dssp             GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG-------------
T ss_pred             hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC-------------
Confidence            999999999999876654 67 7888999999999988665554 8888888888888777776654             


Q ss_pred             ccCccC----CCCCCCCEEEc
Q 036772          281 ELPESL----GRSPSLKFLNL  297 (583)
Q Consensus       281 ~lp~~l----~~l~~L~~L~L  297 (583)
                       +|+..    ..+++|+.|++
T Consensus       548 -~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          548 -EEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             -SSSCTTHHHHHCTTCSEEEC
T ss_pred             -CccHHHHHHHHCcccCccCC
Confidence             44433    33788888864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.45  E-value=2.6e-13  Score=123.99  Aligned_cols=132  Identities=21%  Similarity=0.235  Sum_probs=104.6

Q ss_pred             CCcCEEeccCCCCc--cccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEE
Q 036772          182 CNIENLDLSETAIE--ELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIML  259 (583)
Q Consensus       182 ~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~  259 (583)
                      .+++.|++++|.++  .+|..+..+++|+.|++++|.... + ..+..+++|++|++++|.....+|..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            56777777778887  788878888999999999887544 3 6788889999999999877666777777777777766


Q ss_pred             ccCCccccCccEEEeccCCCcccC--ccCCCCCCCCEEEccCCCCcccCh----hhhccCcccccccccccccccCC
Q 036772          260 ANETAISQNLVDMSLVDCGITELP--ESLGRSPSLKFLNLAENDFEKIPS----SIKQLSNLLFLTLQNCKRLQSLP  330 (583)
Q Consensus       260 l~~~~i~~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~i~~l~~L~~L~L~~c~~L~~lp  330 (583)
                      +++|.+.              ++|  ..+..+++|+.|++++|.++.+|.    .+..+++|+.|++++| .+.++|
T Consensus       102 Ls~N~l~--------------~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~  163 (168)
T 2ell_A          102 LSGNKLK--------------DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAP  163 (168)
T ss_dssp             CBSSSCC--------------SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCC
T ss_pred             ccCCccC--------------cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhcc
Confidence            6666544              455  678889999999999999998886    6888999999999998 345554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.39  E-value=5.3e-13  Score=119.32  Aligned_cols=125  Identities=21%  Similarity=0.206  Sum_probs=101.3

Q ss_pred             CCcCEEeccCCCCc--cccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEE
Q 036772          182 CNIENLDLSETAIE--ELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIML  259 (583)
Q Consensus       182 ~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~  259 (583)
                      ++++.|++++|.++  .+|..+..+++|+.|++++|.....  ..+..+++|++|++++|.....+|..+..+++|+.|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            56777788888887  7888888999999999999865443  6788899999999999877766888777788877777


Q ss_pred             ccCCccccCccEEEeccCCCcccC--ccCCCCCCCCEEEccCCCCcccCh----hhhccCccccccccc
Q 036772          260 ANETAISQNLVDMSLVDCGITELP--ESLGRSPSLKFLNLAENDFEKIPS----SIKQLSNLLFLTLQN  322 (583)
Q Consensus       260 l~~~~i~~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~i~~l~~L~~L~L~~  322 (583)
                      +++|.+.              +++  ..++.+++|++|++++|.++.+|.    .+..+++|+.|++++
T Consensus        95 ls~N~i~--------------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIK--------------DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCC--------------SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCC--------------ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            6666554              344  778899999999999999998876    688899999998864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.37  E-value=1.1e-13  Score=155.84  Aligned_cols=118  Identities=25%  Similarity=0.271  Sum_probs=55.5

Q ss_pred             cccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCC
Q 036772           84 WNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLD  161 (583)
Q Consensus        84 ~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~  161 (583)
                      +..+..+++|+.|+|++|... .+| .+..+++|++|+|++|... .+|..++.+++|+.|+|++| .++.+|..+ .++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~  293 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF  293 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence            334455555555555555433 232 3444555555555554332 44555555555555555552 233444443 333


Q ss_pred             CccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccc
Q 036772          162 SLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSL  225 (583)
Q Consensus       162 ~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l  225 (583)
                      +|++|+|++                     |.++.+|..++.+++|+.|+|++|.....+|..+
T Consensus       294 ~L~~L~L~~---------------------N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          294 QLKYFYFFD---------------------NMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             TCSEEECCS---------------------SCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CCCEEECCC---------------------CCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            333333333                     4445555555556666666666655544444444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.36  E-value=1.8e-12  Score=118.36  Aligned_cols=79  Identities=18%  Similarity=0.178  Sum_probs=41.8

Q ss_pred             CCceEEEccCCChh--hhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEc
Q 036772           68 EHLVSLEMPHSNIE--QLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNL  145 (583)
Q Consensus        68 ~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L  145 (583)
                      ++|++|++++|.+.  .+|..+..+++|++|++++|.... ++.+..+++|++|++++|.....+|..++.+++|+.|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-CSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-hhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            44555555555554  444445555666666666654332 244555556666666655544334444445555555555


Q ss_pred             cC
Q 036772          146 GR  147 (583)
Q Consensus       146 ~~  147 (583)
                      ++
T Consensus       103 s~  104 (168)
T 2ell_A          103 SG  104 (168)
T ss_dssp             BS
T ss_pred             cC
Confidence            55

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.32  E-value=8.8e-13  Score=148.47  Aligned_cols=116  Identities=23%  Similarity=0.275  Sum_probs=53.4

Q ss_pred             hhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCCCcccccc---cCCCcCEEeccCCCCccccccccCCCC
Q 036772          131 HSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLE---ISCNIENLDLSETAIEELPSSIGNLSR  206 (583)
Q Consensus       131 ~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~---~~~~L~~L~L~~~~i~~lp~~i~~l~~  206 (583)
                      +..+..+++|+.|+|++| .+..+|..+ .+++|++|+|++|. +..+|.   .+.+|+.|+|++|.++.+|..++.+++
T Consensus       217 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  294 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ  294 (727)
T ss_dssp             -----CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred             hhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence            344455555555555542 233444433 34444444444421 112221   112333334444455555555666666


Q ss_pred             ccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcccccc
Q 036772          207 LVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEI  249 (583)
Q Consensus       207 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l  249 (583)
                      |++|+|++|.. ..+|..+.++++|++|+|++|...+.+|..+
T Consensus       295 L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          295 LKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             CSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             CCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            66666666543 3455556666666666666655555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.32  E-value=1.3e-11  Score=115.45  Aligned_cols=123  Identities=20%  Similarity=0.174  Sum_probs=104.0

Q ss_pred             ccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCC
Q 036772           48 LRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCAS  126 (583)
Q Consensus        48 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~  126 (583)
                      -++++++++.++.+|..+ +++|++|++++|.++.+|..+..+++|+.|+|++|.+....+ .|..+++|++|+|++|..
T Consensus        12 ~~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            368899999999999764 468999999999999999889999999999999997666555 489999999999999876


Q ss_pred             chhhhhhccCCCCCCEEEccCCCCCCcCCCc-C-CCCCccEEEecCCC
Q 036772          127 LIEIHSSIQHLNKLVFLNLGRCISLKSLPTG-I-NLDSLKVLYLGGCS  172 (583)
Q Consensus       127 l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~L~~c~  172 (583)
                      ....+..+..+++|+.|+|++ +.++.+|.. + .+++|+.|++++|.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence            665666899999999999998 567777775 3 68888888888754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.31  E-value=1.1e-11  Score=116.00  Aligned_cols=124  Identities=20%  Similarity=0.154  Sum_probs=96.3

Q ss_pred             ccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhccc--ccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCC
Q 036772           48 LRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG--VQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGC  124 (583)
Q Consensus        48 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~--~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~  124 (583)
                      -+.++++++.++.+|..+. .+|++|++++|+++.++..  +..+++|++|+|++|.+....| .|..+++|++|+|++|
T Consensus        10 ~~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            3788888888988887653 3889999999998888754  7889999999999987766655 4888899999999988


Q ss_pred             CCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEEEecCCC
Q 036772          125 ASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVLYLGGCS  172 (583)
Q Consensus       125 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~  172 (583)
                      ......+..++.+++|++|+|++|......|..+ .+++|++|++++|.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            7665555668888999999998854433445555 67888888887754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.29  E-value=3.4e-12  Score=114.00  Aligned_cols=101  Identities=20%  Similarity=0.171  Sum_probs=47.0

Q ss_pred             CCccEEEecCCCCC--CCCCCC-CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEee
Q 036772           46 NELRYFQWDGYPLK--SLPSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDL  121 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~--~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L  121 (583)
                      ++|+.|++++|.++  .+|..+ .+++|++|++++|.++.+ ..+..+++|++|++++|.....+|. +..+++|++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            45566666665555  455443 445555555555555544 3344455555555555543333332 223444444444


Q ss_pred             eCCCCchh-hhhhccCCCCCCEEEccC
Q 036772          122 VGCASLIE-IHSSIQHLNKLVFLNLGR  147 (583)
Q Consensus       122 ~~~~~l~~-~~~~i~~l~~L~~L~L~~  147 (583)
                      ++|..... .+..++.+++|+.|++++
T Consensus        96 s~N~i~~~~~~~~~~~l~~L~~L~l~~  122 (149)
T 2je0_A           96 SGNKIKDLSTIEPLKKLENLKSLDLFN  122 (149)
T ss_dssp             TTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred             CCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence            44432221 123444444444444444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.28  E-value=1.7e-11  Score=114.56  Aligned_cols=123  Identities=21%  Similarity=0.233  Sum_probs=62.3

Q ss_pred             CEEeccCCCCccccccccCCCCccEEeeeCCCCCccccc-cccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCC
Q 036772          185 ENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSN-SLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANET  263 (583)
Q Consensus       185 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~-~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~  263 (583)
                      +.++++++.++++|..+..  +|+.|++++|......+. .+..+++|++|++++|...+..|..+..+++|+.|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            3455555555555543322  555555555543332222 2455555555555555544444555555555554444444


Q ss_pred             ccccCccEEEeccCCCcccC-ccCCCCCCCCEEEccCCCCccc-ChhhhccCcccccccccc
Q 036772          264 AISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNLAENDFEKI-PSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       264 ~i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~l-p~~i~~l~~L~~L~L~~c  323 (583)
                      .+..              ++ ..+..+++|++|+|++|.++.+ |..+..+++|+.|++++|
T Consensus        89 ~l~~--------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           89 KIKE--------------ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCCE--------------ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             cCCc--------------cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            4332              22 3355556666666666665533 444555555666555554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.26  E-value=9e-12  Score=114.70  Aligned_cols=124  Identities=19%  Similarity=0.254  Sum_probs=74.4

Q ss_pred             cCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccc-cCCCCcccEEEccC
Q 036772          184 IENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEE-IGNLESLKIMLANE  262 (583)
Q Consensus       184 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~-l~~l~~L~~L~l~~  262 (583)
                      |+.|++++|.++.+|......++|++|++++|.... + ..+..+++|++|++++|... .+|.. +..+++|+.|++++
T Consensus        21 L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~   97 (176)
T 1a9n_A           21 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTN   97 (176)
T ss_dssp             CEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCS
T ss_pred             ceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCC
Confidence            344444444555554322222366666666654433 2 45556666666666665433 33332 35555655555544


Q ss_pred             CccccCccEEEeccCCCcccCc--cCCCCCCCCEEEccCCCCcccChh----hhccCccccccccccc
Q 036772          263 TAISQNLVDMSLVDCGITELPE--SLGRSPSLKFLNLAENDFEKIPSS----IKQLSNLLFLTLQNCK  324 (583)
Q Consensus       263 ~~i~~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~~----i~~l~~L~~L~L~~c~  324 (583)
                      |.+              .++|.  .+..+++|+.|++++|.++.+|..    +..+++|+.|++++++
T Consensus        98 N~i--------------~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           98 NSL--------------VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CCC--------------CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CcC--------------CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            443              33554  677788888888888888888875    7888888888888763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.25  E-value=4.6e-11  Score=111.78  Aligned_cols=81  Identities=22%  Similarity=0.279  Sum_probs=43.3

Q ss_pred             CcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccC
Q 036772          183 NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANE  262 (583)
Q Consensus       183 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  262 (583)
                      +++.|++++|.++.+|..+..+++|+.|++++|......+..+.++++|++|++++|......|..+..+++|+.|++++
T Consensus        32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~  111 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG  111 (193)
T ss_dssp             TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence            44555555555666665566666666666666555444444555566666666665544433333444444444444433


Q ss_pred             C
Q 036772          263 T  263 (583)
Q Consensus       263 ~  263 (583)
                      |
T Consensus       112 N  112 (193)
T 2wfh_A          112 N  112 (193)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.24  E-value=2.1e-11  Score=124.07  Aligned_cols=211  Identities=12%  Similarity=0.107  Sum_probs=99.9

Q ss_pred             CCCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCC---CCCcCCCc-C-CCCC
Q 036772           90 LAALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCI---SLKSLPTG-I-NLDS  162 (583)
Q Consensus        90 l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~---~l~~lp~~-~-~l~~  162 (583)
                      +++|+.|+|.+  .++.++  .|..+++|+.|++.++.....-+..+..+.++..+.+....   ....+... + .+..
T Consensus       100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            66666666666  233333  36666666666666654433333455555555544443210   11111111 1 3334


Q ss_pred             cc-EEEecCCCCcccccc----cCCCcCEEeccCCCCcccccc-ccCCCCccEEeeeCCCCCccccccccCCCCCcEEEc
Q 036772          163 LK-VLYLGGCSNLKRFLE----ISCNIENLDLSETAIEELPSS-IGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFL  236 (583)
Q Consensus       163 L~-~L~L~~c~~l~~~~~----~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l  236 (583)
                      |+ .+.+.....+.....    ...++..+.+.++-...-... ...+++|+.+++++|.....-+..+.++.+|+.|++
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l  257 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL  257 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence            44 333333222211110    112233333332211100000 112455666666654433333344555666666666


Q ss_pred             cCCCCCCccc-cccCCCCccc-EEEccCCccccCccEEEeccCCCcccC-ccCCCCCCCCEEEccCCCCcccCh-hhhcc
Q 036772          237 SGCLKLEKLP-EEIGNLESLK-IMLANETAISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNLAENDFEKIPS-SIKQL  312 (583)
Q Consensus       237 ~~c~~l~~lp-~~l~~l~~L~-~L~l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l  312 (583)
                      ..+  +..++ ..+.++++|+ .+.+.+ .              ++.++ ..+..+++|+.|++++|.++.++. .+..+
T Consensus       258 ~~n--i~~I~~~aF~~~~~L~~~l~l~~-~--------------l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~  320 (329)
T 3sb4_A          258 PHN--LKTIGQRVFSNCGRLAGTLELPA-S--------------VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG  320 (329)
T ss_dssp             CTT--CCEECTTTTTTCTTCCEEEEECT-T--------------CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred             Ccc--cceehHHHhhCChhccEEEEEcc-c--------------ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence            553  33333 3455555555 554443 2              22343 567788888888888888887765 46677


Q ss_pred             Ccccccc
Q 036772          313 SNLLFLT  319 (583)
Q Consensus       313 ~~L~~L~  319 (583)
                      ++|+.++
T Consensus       321 ~~L~~ly  327 (329)
T 3sb4_A          321 VPSKLIY  327 (329)
T ss_dssp             CCCCEEE
T ss_pred             cchhhhc
Confidence            7777664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.24  E-value=7e-12  Score=115.43  Aligned_cols=124  Identities=17%  Similarity=0.219  Sum_probs=91.5

Q ss_pred             CCccEEEecCCCCCCCCCCCCC-CCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeC
Q 036772           46 NELRYFQWDGYPLKSLPSKNIP-EHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVG  123 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~~~~-~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~  123 (583)
                      .+|+.|++++|.++.+|..... ++|++|++++|.++.+ ..+..+++|++|+|++|......+. +..+++|++|++++
T Consensus        19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~   97 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   97 (176)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence            5788888888888888665444 3888888888888877 6688888888888888865543334 47788888888888


Q ss_pred             CCCchhhhh--hccCCCCCCEEEccCCCCCCcCCCc----C-CCCCccEEEecCCC
Q 036772          124 CASLIEIHS--SIQHLNKLVFLNLGRCISLKSLPTG----I-NLDSLKVLYLGGCS  172 (583)
Q Consensus       124 ~~~l~~~~~--~i~~l~~L~~L~L~~c~~l~~lp~~----~-~l~~L~~L~L~~c~  172 (583)
                      |.. ..+|.  .++.+++|+.|++++| .+..+|..    + .+++|+.|++++|.
T Consensus        98 N~i-~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           98 NSL-VELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             CCC-CCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CcC-CcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            764 55565  6778888888888884 45666664    3 67777777777654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.20  E-value=1.1e-10  Score=107.26  Aligned_cols=124  Identities=22%  Similarity=0.277  Sum_probs=77.8

Q ss_pred             cCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCC
Q 036772          184 IENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANET  263 (583)
Q Consensus       184 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~  263 (583)
                      .+.++++++.++.+|..+  .++|+.|++++|......+..+..+++|++|++++|......+..+..+++|+.|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            345666666677666543  357777777776654444445566777777777776544333344566666665555555


Q ss_pred             ccccCccEEEeccCCCcccCc-cCCCCCCCCEEEccCCCCcccChhh-hccCcccccccccc
Q 036772          264 AISQNLVDMSLVDCGITELPE-SLGRSPSLKFLNLAENDFEKIPSSI-KQLSNLLFLTLQNC  323 (583)
Q Consensus       264 ~i~~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp~~i-~~l~~L~~L~L~~c  323 (583)
                      .+.              ++|. .+..+++|+.|++++|.++.+|..+ ..+++|+.|++++|
T Consensus        87 ~l~--------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           87 KLQ--------------SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             CCC--------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             Ccc--------------ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence            443              3443 4567777777777777777776653 56777777777766

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.19  E-value=1.9e-10  Score=105.85  Aligned_cols=124  Identities=25%  Similarity=0.274  Sum_probs=92.7

Q ss_pred             CccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCC
Q 036772           47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGC  124 (583)
Q Consensus        47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~  124 (583)
                      ..+.++++++.++.+|..+ +++|++|++++|+++.++.. +..+++|++|++++|......+. +..+++|++|++++|
T Consensus         8 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            3567888888888888544 46888888888888877654 57888899999988865544443 678888888888887


Q ss_pred             CCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCC
Q 036772          125 ASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCS  172 (583)
Q Consensus       125 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~  172 (583)
                      ......+..++.+++|+.|++++| .++.+|...  .+++|++|++++|.
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence            655444455788888999998884 666777654  57888888887764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.09  E-value=8.8e-10  Score=112.03  Aligned_cols=96  Identities=22%  Similarity=0.341  Sum_probs=58.3

Q ss_pred             cCEEeccCCCCccccc-cccCCCCccEEeeeCCCCCccc-cccccCCCCCc-EEEccCCCCCCcc-ccccCCCCcccEEE
Q 036772          184 IENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSV-SNSLCNLKSLQ-YLFLSGCLKLEKL-PEEIGNLESLKIML  259 (583)
Q Consensus       184 L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~-~L~l~~c~~l~~l-p~~l~~l~~L~~L~  259 (583)
                      |+.+++++|.++.+|. .+..+++|+.+++.++  +..+ +..|.++.+|+ .+++..  .+..+ +..+.++++|+.++
T Consensus       228 L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~  303 (329)
T 3sb4_A          228 LVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVL  303 (329)
T ss_dssp             CCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEE
T ss_pred             CeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEE
Confidence            3334444455666654 3677777777777765  3333 34567777777 777776  33333 35667777766666


Q ss_pred             ccCCccccCccEEEeccCCCcccC-ccCCCCCCCCEEEc
Q 036772          260 ANETAISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNL  297 (583)
Q Consensus       260 l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~L  297 (583)
                      ++.+.+.              .++ ..+..+++|+.+..
T Consensus       304 l~~n~i~--------------~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          304 ATGDKIT--------------TLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECSSCCC--------------EECTTTTCTTCCCCEEEC
T ss_pred             eCCCccC--------------ccchhhhcCCcchhhhcc
Confidence            5555443              355 46777888887753

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.06  E-value=6.7e-10  Score=101.93  Aligned_cols=111  Identities=18%  Similarity=0.191  Sum_probs=80.6

Q ss_pred             cCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCC
Q 036772          184 IENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANET  263 (583)
Q Consensus       184 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~  263 (583)
                      -+.++++++.++.+|..+.  ++|+.|++++|......|..+.++++|++|++++|......+..+..+++|+.|++++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            3567888888888887664  78899999988776666778888888888888887544433334567777776666665


Q ss_pred             ccccCccEEEeccCCCcccCcc-CCCCCCCCEEEccCCCCcccChhhh
Q 036772          264 AISQNLVDMSLVDCGITELPES-LGRSPSLKFLNLAENDFEKIPSSIK  310 (583)
Q Consensus       264 ~i~~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~Ls~n~l~~lp~~i~  310 (583)
                      .+.              .+|.. +..+++|+.|+|++|.+...+..+.
T Consensus        92 ~l~--------------~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~  125 (174)
T 2r9u_A           92 HLK--------------SIPRGAFDNLKSLTHIYLYNNPWDCECRDIM  125 (174)
T ss_dssp             CCC--------------CCCTTTTTTCTTCSEEECCSSCBCTTBGGGH
T ss_pred             ccc--------------eeCHHHhccccCCCEEEeCCCCcccccccHH
Confidence            544              46654 7788888888888888876665443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.03  E-value=1.2e-09  Score=99.86  Aligned_cols=108  Identities=18%  Similarity=0.163  Sum_probs=80.0

Q ss_pred             CcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccC
Q 036772          183 NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANE  262 (583)
Q Consensus       183 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  262 (583)
                      ..+.++++++.++.+|..+.  ++|+.|++++|......|..+.++++|++|++++|......+..+..+++|+.|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            34678888888888887663  7889999998877766677888888899999888765544444567777777666666


Q ss_pred             CccccCccEEEeccCCCcccCc-cCCCCCCCCEEEccCCCCcccC
Q 036772          263 TAISQNLVDMSLVDCGITELPE-SLGRSPSLKFLNLAENDFEKIP  306 (583)
Q Consensus       263 ~~i~~~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp  306 (583)
                      |.+.              .+|. .+..+++|+.|+|++|.++..+
T Consensus        88 N~l~--------------~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           88 NQLK--------------SIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SCCC--------------CCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CccC--------------EeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            5544              3654 5788888899999888876444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.01  E-value=1.5e-11  Score=115.48  Aligned_cols=120  Identities=26%  Similarity=0.230  Sum_probs=61.9

Q ss_pred             CCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEcc
Q 036772          182 CNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLAN  261 (583)
Q Consensus       182 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~  261 (583)
                      .+|+.|++++|.++.+| .+..+++|+.|++++|... .+|..+..+++|++|++++|... .+| .+..+++|+     
T Consensus        48 ~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~-~l~-~~~~l~~L~-----  118 (198)
T 1ds9_A           48 KACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLR-----  118 (198)
T ss_dssp             TTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC-CHH-HHHHHHHSS-----
T ss_pred             CCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC-cCC-ccccCCCCC-----
Confidence            45555555555555555 4555555555555554332 34444444455555555554322 233 233344433     


Q ss_pred             CCccccCccEEEeccCCCcccCc--cCCCCCCCCEEEccCCCCcccChh-----------hhccCcccccc
Q 036772          262 ETAISQNLVDMSLVDCGITELPE--SLGRSPSLKFLNLAENDFEKIPSS-----------IKQLSNLLFLT  319 (583)
Q Consensus       262 ~~~i~~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~Ls~n~l~~lp~~-----------i~~l~~L~~L~  319 (583)
                               .|++++|.+++++.  .+..+++|++|++++|.++..+..           +..+++|+.|+
T Consensus       119 ---------~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          119 ---------VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ---------EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             ---------EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence                     33444444444443  566777777777777776543221           45566666555

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.97  E-value=2.5e-09  Score=97.70  Aligned_cols=101  Identities=19%  Similarity=0.134  Sum_probs=66.0

Q ss_pred             CccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCC
Q 036772           47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGC  124 (583)
Q Consensus        47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~  124 (583)
                      ..+.++++++.++.+|..+ +++|++|++++|.++.++ ..+..+++|++|+|++|++....+. |..+++|++|+|++|
T Consensus        10 ~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            3567778888888877655 367777888888777763 4477777777777777765443333 566777777777776


Q ss_pred             CCchhhhhhccCCCCCCEEEccCC
Q 036772          125 ASLIEIHSSIQHLNKLVFLNLGRC  148 (583)
Q Consensus       125 ~~l~~~~~~i~~l~~L~~L~L~~c  148 (583)
                      ......+..+..+++|+.|+|++|
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCC
Confidence            543333334666666666666653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.95  E-value=4.6e-08  Score=102.02  Aligned_cols=181  Identities=11%  Similarity=0.115  Sum_probs=89.5

Q ss_pred             CCccEEEecCCCCCCCCCC-CCCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCCCC--CCCCCCCcCEEee
Q 036772           46 NELRYFQWDGYPLKSLPSK-NIPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSRIP--DLSLALNLEWLDL  121 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~-~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L  121 (583)
                      ..++.+.+.. .++.++.. |.-.+|+.+.+..+ ++.+... |.+ .+|+.+.+..  .+..++  .|..+++|+.+++
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l  187 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADL  187 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEEC
T ss_pred             CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeec
Confidence            3444444432 24444433 32235666666554 5555433 444 3566666664  233333  3666666666666


Q ss_pred             eCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCCCccccccc---CCCcCEEeccCCCCcc
Q 036772          122 VGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRFLEI---SCNIENLDLSETAIEE  196 (583)
Q Consensus       122 ~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~~~---~~~L~~L~L~~~~i~~  196 (583)
                      .++. +..++...-...+|+.+.+..  .++.++...  ++++|+.+++..+  +..+...   -.+|+.+.+. +.++.
T Consensus       188 ~~n~-l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~lp-~~i~~  261 (401)
T 4fdw_A          188 SKTK-ITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKLP-NGVTN  261 (401)
T ss_dssp             TTSC-CSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEEE-TTCCE
T ss_pred             CCCc-ceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEeC-CCccE
Confidence            6543 333443222246667766653  355555443  5666666666542  2221111   1345555552 33455


Q ss_pred             cc-ccccCCCCccEEeeeCCCCC-----ccccccccCCCCCcEEEcc
Q 036772          197 LP-SSIGNLSRLVRLDLTNCSRL-----KSVSNSLCNLKSLQYLFLS  237 (583)
Q Consensus       197 lp-~~i~~l~~L~~L~L~~~~~l-----~~lp~~l~~l~~L~~L~l~  237 (583)
                      ++ ..+.++++|+.+.+.++...     ..-+..+.++++|+.+.+.
T Consensus       262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence            53 24666677777776654332     1223345555556655554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.93  E-value=4.1e-09  Score=96.64  Aligned_cols=100  Identities=17%  Similarity=0.110  Sum_probs=65.0

Q ss_pred             ccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCCC
Q 036772           48 LRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGCA  125 (583)
Q Consensus        48 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~~  125 (583)
                      -+.++++++.++++|..+. ++|++|+|++|.++.++ ..+..+++|++|+|++|++....+. |..+++|++|+|++|.
T Consensus        14 ~~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CcEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            3677788888888877553 67788888888777763 4577777777777777754443333 5667777777777654


Q ss_pred             CchhhhhhccCCCCCCEEEccCC
Q 036772          126 SLIEIHSSIQHLNKLVFLNLGRC  148 (583)
Q Consensus       126 ~l~~~~~~i~~l~~L~~L~L~~c  148 (583)
                      .....+..++.+++|+.|+|++|
T Consensus        93 l~~l~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           93 LKSIPRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             CCCCCTTTTTTCTTCSEEECCSS
T ss_pred             cceeCHHHhccccCCCEEEeCCC
Confidence            43222233666666666666663

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.93  E-value=3.8e-12  Score=119.66  Aligned_cols=111  Identities=17%  Similarity=0.106  Sum_probs=71.7

Q ss_pred             cCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCc
Q 036772           37 HSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNL  116 (583)
Q Consensus        37 l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L  116 (583)
                      +|..+..+ ++|++|++++|.++.+|....+++|++|++++|.++.+|..+..+++|++|++++|+.. .+|.+..+++|
T Consensus        40 l~~~~~~l-~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~-~l~~~~~l~~L  117 (198)
T 1ds9_A           40 MDATLSTL-KACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA-SLSGIEKLVNL  117 (198)
T ss_dssp             CHHHHHHT-TTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECC-CHHHHHHHHHS
T ss_pred             hhHHHhcC-CCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCC-cCCccccCCCC
Confidence            33366666 47777777777777777222667777777777777777666666677777777777433 35556666777


Q ss_pred             CEEeeeCCCCchhhh-hhccCCCCCCEEEccCCC
Q 036772          117 EWLDLVGCASLIEIH-SSIQHLNKLVFLNLGRCI  149 (583)
Q Consensus       117 ~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~~c~  149 (583)
                      ++|++++|.....-+ ..+..+++|+.|++++|.
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence            777777765432111 356677777777777653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.81  E-value=2e-07  Score=97.18  Aligned_cols=252  Identities=12%  Similarity=0.162  Sum_probs=171.7

Q ss_pred             CCCCcceEEEecCCCCCCccceecCC-cccccCCCccEEEecCCCCCCCCCC-CCCCCceEEEccCCChhhhccc-ccCC
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSR-CLESFFNELRYFQWDGYPLKSLPSK-NIPEHLVSLEMPHSNIEQLWNG-VQNL   90 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lp~~-~~~~~L~~L~L~~~~l~~l~~~-~~~l   90 (583)
                      .+.+++...+.++       ...++. .|..  .+|+.+.+..+ ++.++.. |.-.+|+++.++. .++.+... |.++
T Consensus       111 ~~~~l~~i~ip~~-------i~~I~~~aF~~--~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c  179 (401)
T 4fdw_A          111 ILKGYNEIILPNS-------VKSIPKDAFRN--SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYC  179 (401)
T ss_dssp             ECSSCSEEECCTT-------CCEECTTTTTT--CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTC
T ss_pred             ecCCccEEEECCc-------cCEehHhhccc--CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCc
Confidence            3456666666442       334443 3333  36899988765 7777765 4445799999986 67777644 8899


Q ss_pred             CCccEEeccCCCCCCCCC-C-CCCCCCcCEEeeeCCCCchhhh-hhccCCCCCCEEEccCCCCCCcCCCcC-CCCCccEE
Q 036772           91 AALKRLNLSYCKQLSRIP-D-LSLALNLEWLDLVGCASLIEIH-SSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSLKVL  166 (583)
Q Consensus        91 ~~L~~L~Ls~~~~l~~~p-~-l~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L  166 (583)
                      .+|+.++|+.|.. ..++ . |. ..+|+.+.|..+  +..++ ..+.++++|+.+++..  .++.++... .-.+|+.+
T Consensus       180 ~~L~~l~l~~n~l-~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i  253 (401)
T 4fdw_A          180 YNLKKADLSKTKI-TKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTV  253 (401)
T ss_dssp             TTCCEEECTTSCC-SEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEE
T ss_pred             ccCCeeecCCCcc-eEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC--CccCccccccccCCccEE
Confidence            9999999988754 3444 3 54 588999999853  44444 5678899999999976  466666655 44789999


Q ss_pred             EecCCCCccccc----ccCCCcCEEeccCCCCc-----ccc-ccccCCCCccEEeeeCCCCCccc-cccccCCCCCcEEE
Q 036772          167 YLGGCSNLKRFL----EISCNIENLDLSETAIE-----ELP-SSIGNLSRLVRLDLTNCSRLKSV-SNSLCNLKSLQYLF  235 (583)
Q Consensus       167 ~L~~c~~l~~~~----~~~~~L~~L~L~~~~i~-----~lp-~~i~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~L~~L~  235 (583)
                      .+.+  .+..++    ....+|+.+.+.++.+.     .++ ..+..+++|+.+.+.++  +..+ ...+.++.+|+.+.
T Consensus       254 ~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~  329 (401)
T 4fdw_A          254 KLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLT  329 (401)
T ss_dssp             EEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEE
T ss_pred             EeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEE
Confidence            8854  344333    33468889988887665     454 35889999999999852  4444 45778899999999


Q ss_pred             ccCCCCCCcc-ccccCCCCcccEEEccCCccccCccEEEeccCCCcccC-ccCCCC-CCCCEEEccCCCCc
Q 036772          236 LSGCLKLEKL-PEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELP-ESLGRS-PSLKFLNLAENDFE  303 (583)
Q Consensus       236 l~~c~~l~~l-p~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~l-~~L~~L~Ls~n~l~  303 (583)
                      +..+  +..+ ...+.++ +|+.+.+.++.+..              ++ ..+..+ .+++.|.+..+.+.
T Consensus       330 lp~~--l~~I~~~aF~~~-~L~~l~l~~n~~~~--------------l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          330 IPAN--VTQINFSAFNNT-GIKEVKVEGTTPPQ--------------VFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             ECTT--CCEECTTSSSSS-CCCEEEECCSSCCB--------------CCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             ECcc--ccEEcHHhCCCC-CCCEEEEcCCCCcc--------------cccccccCCCCCccEEEeCHHHHH
Confidence            9653  4433 3456667 77777776665443              43 455566 47899999887755

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.68  E-value=6.5e-07  Score=93.14  Aligned_cols=59  Identities=12%  Similarity=0.149  Sum_probs=37.8

Q ss_pred             cccccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhccc-ccCCCCccEEeccCC
Q 036772           40 CLESFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYC  101 (583)
Q Consensus        40 ~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~  101 (583)
                      .|... .+|+.+.+.. .++.++.. | .+.+|+.++++.+ ++.+... +..+.+|+.+.+..+
T Consensus        66 AF~~c-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~  127 (394)
T 4fs7_A           66 AFQGC-RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM  127 (394)
T ss_dssp             TTTTC-TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             HhhCC-CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc
Confidence            34444 4788888753 36777654 4 6778888888754 5555443 677777777666543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.66  E-value=8.1e-08  Score=98.05  Aligned_cols=105  Identities=18%  Similarity=0.091  Sum_probs=78.2

Q ss_pred             EEeccCC-CCccccccccCCCCccEEeeeC-CCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCC
Q 036772          186 NLDLSET-AIEELPSSIGNLSRLVRLDLTN-CSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANET  263 (583)
Q Consensus       186 ~L~L~~~-~i~~lp~~i~~l~~L~~L~L~~-~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~  263 (583)
                      .++++++ .++.+|. +..+++|+.|+|++ |......+..+.++++|+.|+|++|...+..|..+.++++|+.|++++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4677776 7888898 88899999999986 5554444567888999999999998766666667788888777776666


Q ss_pred             ccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCccc
Q 036772          264 AISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKI  305 (583)
Q Consensus       264 ~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l  305 (583)
                      .+.              .+|..+.....|+.|+|.+|.+...
T Consensus        91 ~l~--------------~~~~~~~~~~~L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           91 ALE--------------SLSWKTVQGLSLQELVLSGNPLHCS  118 (347)
T ss_dssp             CCS--------------CCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred             ccc--------------eeCHHHcccCCceEEEeeCCCccCC
Confidence            554              4665443333499999999988743

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.65  E-value=2.9e-09  Score=109.98  Aligned_cols=21  Identities=29%  Similarity=0.455  Sum_probs=12.7

Q ss_pred             CccCCCCCCCCEEEccCCCCc
Q 036772          283 PESLGRSPSLKFLNLAENDFE  303 (583)
Q Consensus       283 p~~l~~l~~L~~L~Ls~n~l~  303 (583)
                      ...+...++|++|+|++|.|+
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHhCCCCCEEeccCCCCC
Confidence            334445566677777777665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.58  E-value=1.1e-08  Score=105.53  Aligned_cols=156  Identities=21%  Similarity=0.202  Sum_probs=92.5

Q ss_pred             CCCccEEEecCCCCccc----ccc----cCCCcCEEeccCCCCcc--ccccccCCCCccEEeeeCCCCCccccccc----
Q 036772          160 LDSLKVLYLGGCSNLKR----FLE----ISCNIENLDLSETAIEE--LPSSIGNLSRLVRLDLTNCSRLKSVSNSL----  225 (583)
Q Consensus       160 l~~L~~L~L~~c~~l~~----~~~----~~~~L~~L~L~~~~i~~--lp~~i~~l~~L~~L~L~~~~~l~~lp~~l----  225 (583)
                      +++|++|++++|..-..    +..    ...+|++|+|++|.++.  +..-...+++|+.|+|++|.........+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            45677888877653211    111    12467777777777653  12212234567777777775543322222    


Q ss_pred             -cCCCCCcEEEccCCCCCC----ccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCC
Q 036772          226 -CNLKSLQYLFLSGCLKLE----KLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAEN  300 (583)
Q Consensus       226 -~~l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n  300 (583)
                       ...+.|++|++++|....    .++..+..+++|++|++++|.+.+.         ....++..+...++|++|+|++|
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~---------g~~~L~~~L~~~~~L~~L~Ls~N  221 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE---------GLELLAAQLDRNRQLQELNVAYN  221 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHH---------HHHHHHHHGGGCSCCCEEECCSS
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcH---------HHHHHHHHHhcCCCcCeEECCCC
Confidence             235667777777765422    2334445555666555555554320         00014556677789999999999


Q ss_pred             CCcc-----cChhhhccCccccccccccc
Q 036772          301 DFEK-----IPSSIKQLSNLLFLTLQNCK  324 (583)
Q Consensus       301 ~l~~-----lp~~i~~l~~L~~L~L~~c~  324 (583)
                      .++.     ++..+...++|+.|+|++|.
T Consensus       222 ~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          222 GAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            9973     44556678999999999984

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.51  E-value=2.2e-07  Score=94.79  Aligned_cols=96  Identities=21%  Similarity=0.135  Sum_probs=48.9

Q ss_pred             EccCC-ChhhhcccccCCCCccEEeccC-CCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCC
Q 036772           74 EMPHS-NIEQLWNGVQNLAALKRLNLSY-CKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCIS  150 (583)
Q Consensus        74 ~L~~~-~l~~l~~~~~~l~~L~~L~Ls~-~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~  150 (583)
                      +++++ +++.+|. +..+++|+.|+|++ |.+....+ .|..+++|++|+|++|......+..++.+++|+.|+|++ +.
T Consensus        14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~   91 (347)
T 2ifg_A           14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NA   91 (347)
T ss_dssp             ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SC
T ss_pred             EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-Cc
Confidence            44444 4555555 55555555555553 43222222 255555555555555544333344556666666666666 44


Q ss_pred             CCcCCCcC-CCCCccEEEecCC
Q 036772          151 LKSLPTGI-NLDSLKVLYLGGC  171 (583)
Q Consensus       151 l~~lp~~~-~l~~L~~L~L~~c  171 (583)
                      ++.+|..+ ....|+.|+|.+|
T Consensus        92 l~~~~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           92 LESLSWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             CSCCCSTTTCSCCCCEEECCSS
T ss_pred             cceeCHHHcccCCceEEEeeCC
Confidence            55555543 2223666666553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.47  E-value=2e-07  Score=95.57  Aligned_cols=129  Identities=17%  Similarity=0.204  Sum_probs=71.3

Q ss_pred             cccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhcc--CCCCCCEEEccCCC-------CCCcCCC
Q 036772           86 GVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQ--HLNKLVFLNLGRCI-------SLKSLPT  156 (583)
Q Consensus        86 ~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~--~l~~L~~L~L~~c~-------~l~~lp~  156 (583)
                      .+..+|+|+.|+|++|... .++.+. .++|++|+|..|.........+.  .+++|+.|+|+.+.       .+..+..
T Consensus       167 ll~~~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          167 VLDAMPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             HHHTCTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             HHhcCCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            3567788999998887433 233343 78899999988775554444443  68889998885311       1212211


Q ss_pred             cC---CCCCccEEEecCCCCcccc----c--ccCCCcCEEeccCCCCcc-----ccccccCCCCccEEeeeCCC
Q 036772          157 GI---NLDSLKVLYLGGCSNLKRF----L--EISCNIENLDLSETAIEE-----LPSSIGNLSRLVRLDLTNCS  216 (583)
Q Consensus       157 ~~---~l~~L~~L~L~~c~~l~~~----~--~~~~~L~~L~L~~~~i~~-----lp~~i~~l~~L~~L~L~~~~  216 (583)
                      .+   .+++|++|++.+|......    .  ..+++|+.|+|+.|.++.     ++..+..+++|+.|++++|.
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            22   3677888877776543211    1  123345555555554442     22223344455555554443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.35  E-value=3e-05  Score=80.46  Aligned_cols=273  Identities=15%  Similarity=0.092  Sum_probs=128.5

Q ss_pred             CCCCcceEEEecCCCCCCccceecCC-cccccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhcc-cccC
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSR-CLESFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLWN-GVQN   89 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~~-~~~~   89 (583)
                      ++.+|+.+.|..+       ...+.. .|... .+|+.+++..+ ++.++.. | .+..|+.+.++.+ ++.+.. .+.+
T Consensus        69 ~c~~L~~i~lp~~-------i~~I~~~aF~~c-~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~  138 (394)
T 4fs7_A           69 GCRKVTEIKIPST-------VREIGEFAFENC-SKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKG  138 (394)
T ss_dssp             TCTTEEEEECCTT-------CCEECTTTTTTC-TTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             CCCCceEEEeCCC-------ccCcchhHhhCC-CCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeec
Confidence            8899999999643       344543 55555 58999988643 6666544 3 5666776666543 222221 1333


Q ss_pred             CCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhh-hhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEE
Q 036772           90 LAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIH-SSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVL  166 (583)
Q Consensus        90 l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~-~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L  166 (583)
                      +..++......... .....|..+.+|+.+.+.+.  ...++ ..+.++.+|+.+.+..  .++.++...  .+..|+.+
T Consensus       139 ~~~~~~~~~~~~~~-i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i  213 (394)
T 4fs7_A          139 CDFKEITIPEGVTV-IGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENM  213 (394)
T ss_dssp             CCCSEEECCTTCCE-ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBC
T ss_pred             ccccccccCccccc-cchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC--CceEeCchhhcccccccee
Confidence            33222222111110 01112445555555555432  11222 2344455555554432  133332222  33344433


Q ss_pred             EecCCC--------------------Ccccc----cccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCcccc
Q 036772          167 YLGGCS--------------------NLKRF----LEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVS  222 (583)
Q Consensus       167 ~L~~c~--------------------~l~~~----~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp  222 (583)
                      .+....                    .+..+    ......++.+.+..+...--...+..+..++.+......   ...
T Consensus       214 ~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~  290 (394)
T 4fs7_A          214 EFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPE  290 (394)
T ss_dssp             CCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECT
T ss_pred             ecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---ecc
Confidence            332211                    01111    111123444444333221112223444444444443211   111


Q ss_pred             ccccCCCCCcEEEccCCCCCCccc-cccCCCCcccEEEccCCccccCccEEEeccCCCcccC-ccCCCCCCCCEEEccCC
Q 036772          223 NSLCNLKSLQYLFLSGCLKLEKLP-EEIGNLESLKIMLANETAISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNLAEN  300 (583)
Q Consensus       223 ~~l~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n  300 (583)
                      ..+..+.+|+.+.+...  +..++ ..+.++.+|+.+.+..               .++.+. ..+..+++|+.+++..+
T Consensus       291 ~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~---------------~v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY---------------LVEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT---------------TCCEECTTTTTTCTTCCEECCCTT
T ss_pred             ccccccccccccccccc--cceechhhhcCCCCCCEEEeCC---------------cccEEhHHhccCCCCCCEEEECcc
Confidence            23445556666655432  22222 2344555555554432               234454 56778899999998765


Q ss_pred             CCcccCh-hhhccCccccccccc
Q 036772          301 DFEKIPS-SIKQLSNLLFLTLQN  322 (583)
Q Consensus       301 ~l~~lp~-~i~~l~~L~~L~L~~  322 (583)
                       ++.++. .+..|.+|+.+++..
T Consensus       354 -l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          354 -LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             -CCEECTTTBTTCTTCCEEEEEG
T ss_pred             -ccEehHHHhhCCCCCCEEEECC
Confidence             776653 567788888888764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.29  E-value=7.1e-07  Score=91.45  Aligned_cols=36  Identities=11%  Similarity=0.357  Sum_probs=26.8

Q ss_pred             CCCCCCEEEccCCCCcc-----cChhhhccCcccccccccc
Q 036772          288 RSPSLKFLNLAENDFEK-----IPSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       288 ~l~~L~~L~Ls~n~l~~-----lp~~i~~l~~L~~L~L~~c  323 (583)
                      .+++|++|+|+.|.++.     ++..+..+++|+.|++++|
T Consensus       277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            46788888888888763     4455567788888888877

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.16  E-value=1.8e-06  Score=78.26  Aligned_cols=94  Identities=16%  Similarity=0.318  Sum_probs=54.9

Q ss_pred             CCCCCC-CCCCceEEEccCCChhhh-cccccCCCCccEEeccCCCCCCCCC--CCCCC----CCcCEEeeeCCCCchh-h
Q 036772           60 SLPSKN-IPEHLVSLEMPHSNIEQL-WNGVQNLAALKRLNLSYCKQLSRIP--DLSLA----LNLEWLDLVGCASLIE-I  130 (583)
Q Consensus        60 ~lp~~~-~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l----~~L~~L~L~~~~~l~~-~  130 (583)
                      .+|... ...+|++||++++.++.. ...+..+++|+.|+|++|..+++..  .++.+    ++|++|+|++|..++. -
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            345443 334677777777766532 1335677777777777776555422  23332    3577777777765443 2


Q ss_pred             hhhccCCCCCCEEEccCCCCCCc
Q 036772          131 HSSIQHLNKLVFLNLGRCISLKS  153 (583)
Q Consensus       131 ~~~i~~l~~L~~L~L~~c~~l~~  153 (583)
                      -..+..+++|++|+|++|..+++
T Consensus       132 l~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHhcCCCCCEEECCCCCCCCc
Confidence            23455666777777776666554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.04  E-value=2.4e-06  Score=77.44  Aligned_cols=95  Identities=14%  Similarity=0.215  Sum_probs=67.4

Q ss_pred             hhcccccCCCCccEEeccCCCCCCC-CCCCCCCCCcCEEeeeCCCCchh-hhhhccCC----CCCCEEEccCCCCCCcCC
Q 036772           82 QLWNGVQNLAALKRLNLSYCKQLSR-IPDLSLALNLEWLDLVGCASLIE-IHSSIQHL----NKLVFLNLGRCISLKSLP  155 (583)
Q Consensus        82 ~l~~~~~~l~~L~~L~Ls~~~~l~~-~p~l~~l~~L~~L~L~~~~~l~~-~~~~i~~l----~~L~~L~L~~c~~l~~lp  155 (583)
                      .+|.....-.+|+.||+++|..... +..+..+++|++|+|++|..++. --..+..+    ++|++|+|++|..+++-.
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            4455443445799999999973322 33578899999999999986654 23455554    479999999998887532


Q ss_pred             Cc-C-CCCCccEEEecCCCCccc
Q 036772          156 TG-I-NLDSLKVLYLGGCSNLKR  176 (583)
Q Consensus       156 ~~-~-~l~~L~~L~L~~c~~l~~  176 (583)
                      -. + .+++|++|++++|..++.
T Consensus       132 l~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHhcCCCCCEEECCCCCCCCc
Confidence            11 1 689999999999987653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.96  E-value=0.00071  Score=69.96  Aligned_cols=77  Identities=8%  Similarity=0.065  Sum_probs=31.8

Q ss_pred             CCCCceEEEccCC---Chhhhccc-ccCCCCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCchhhh-hhccCCC
Q 036772           66 IPEHLVSLEMPHS---NIEQLWNG-VQNLAALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGCASLIEIH-SSIQHLN  138 (583)
Q Consensus        66 ~~~~L~~L~L~~~---~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~~-~~i~~l~  138 (583)
                      .+.+|+.+.+..+   .++.+... |..+.+|+.+.+..+  ++.++  .|..+.+|+.+.+...  ...+. ..+..+.
T Consensus        85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~  160 (394)
T 4gt6_A           85 NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCY  160 (394)
T ss_dssp             TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred             CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccccccce--eeeecccceeccc
Confidence            3455555554433   23333222 444444444444332  22222  2444555555555431  11111 2344455


Q ss_pred             CCCEEEcc
Q 036772          139 KLVFLNLG  146 (583)
Q Consensus       139 ~L~~L~L~  146 (583)
                      +|+.+.+.
T Consensus       161 ~L~~i~~~  168 (394)
T 4gt6_A          161 SLHTVTLP  168 (394)
T ss_dssp             TCCEEECC
T ss_pred             cccccccc
Confidence            55555553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.86  E-value=0.0012  Score=68.21  Aligned_cols=275  Identities=12%  Similarity=0.173  Sum_probs=165.0

Q ss_pred             CCC-CcceEEEecCCCCCCccceecC-CcccccCCCccEEEecCCC---CCCCCCC-C-CCCCceEEEccCCChhhhccc
Q 036772           14 RMR-RLRFFKFYNSFPEMNKCKVRHS-RCLESFFNELRYFQWDGYP---LKSLPSK-N-IPEHLVSLEMPHSNIEQLWNG   86 (583)
Q Consensus        14 ~m~-~Lr~L~l~~~~~~~~~~~~~l~-~~l~~l~~~Lr~L~l~~~~---l~~lp~~-~-~~~~L~~L~L~~~~l~~l~~~   86 (583)
                      +++ .|+...|..+       ...+. ..|... .+|+.+.+..+.   ++.++.. | .+.+|+.+.+..+ ++.+...
T Consensus        61 ~~~~~L~sI~iP~s-------vt~Ig~~AF~~C-~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~  131 (394)
T 4gt6_A           61 NYKYVLTSVQIPDT-------VTEIGSNAFYNC-TSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE  131 (394)
T ss_dssp             TCCSCCCEEEECTT-------CCEECTTTTTTC-TTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred             CCCCcCEEEEECCC-------eeEEhHHHhhCC-ccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence            453 4888888542       33444 355555 589999998763   6667654 3 6778888877654 5555443


Q ss_pred             -ccCCCCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCc-C-CCC
Q 036772           87 -VQNLAALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTG-I-NLD  161 (583)
Q Consensus        87 -~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~  161 (583)
                       +..+.+|+.+.+..+  ...++  .|..+.+|+.+.+...  +..+....-...+|+.+.+..  .+..+... + .+.
T Consensus       132 aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~--~~~~i~~~af~~c~  205 (394)
T 4gt6_A          132 AFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPA--KVTRIGTNAFSECF  205 (394)
T ss_dssp             TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECT--TCCEECTTTTTTCT
T ss_pred             hhhhhcccccccccce--eeeecccceecccccccccccce--eeEeccccccccceeEEEECC--cccccccchhhhcc
Confidence             788999999999764  33333  4788899999999763  344443322346788888764  23333222 2 566


Q ss_pred             CccEEEecCCCCc--cc------------ccc--cCCCcCEEeccCCCCcccc-ccccCCCCccEEeeeCCCCCcccccc
Q 036772          162 SLKVLYLGGCSNL--KR------------FLE--ISCNIENLDLSETAIEELP-SSIGNLSRLVRLDLTNCSRLKSVSNS  224 (583)
Q Consensus       162 ~L~~L~L~~c~~l--~~------------~~~--~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~lp~~  224 (583)
                      +++..........  ..            +..  ....+..+.+. +.++.+. ..+..+..|+.+.+.+.. ...-...
T Consensus       206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~a  283 (394)
T 4gt6_A          206 ALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSV-VSIGTGA  283 (394)
T ss_dssp             TCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTC-CEECTTT
T ss_pred             ccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEeccccc-ceecCcc
Confidence            6666655432110  00            000  00112222222 1222232 246778888888886532 2223456


Q ss_pred             ccCCCCCcEEEccCCCCCCccc-cccCCCCcccEEEccCCccccCccEEEeccCCCcccC-ccCCCCCCCCEEEccCCCC
Q 036772          225 LCNLKSLQYLFLSGCLKLEKLP-EEIGNLESLKIMLANETAISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNLAENDF  302 (583)
Q Consensus       225 l~~l~~L~~L~l~~c~~l~~lp-~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l  302 (583)
                      +.++..|+.+.+..  .+..++ ..+.++.+|+.+.+..+               ++.+. ..+..+.+|+.+.|.. .+
T Consensus       284 F~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~---------------v~~I~~~aF~~C~~L~~i~ip~-sv  345 (394)
T 4gt6_A          284 FMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG---------------ITQILDDAFAGCEQLERIAIPS-SV  345 (394)
T ss_dssp             TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT---------------CCEECTTTTTTCTTCCEEEECT-TC
T ss_pred             cccccccccccCCC--cccccCceeecCCCCcCEEEeCCc---------------ccEehHhHhhCCCCCCEEEECc-cc
Confidence            77788999988863  344444 35677788887776542               23343 4677888999998864 36


Q ss_pred             cccCh-hhhccCcccccccccc
Q 036772          303 EKIPS-SIKQLSNLLFLTLQNC  323 (583)
Q Consensus       303 ~~lp~-~i~~l~~L~~L~L~~c  323 (583)
                      +.++. .+..|++|+.+++.+.
T Consensus       346 ~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          346 TKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CBCCGGGGTTCTTCCEEEESSC
T ss_pred             CEEhHhHhhCCCCCCEEEECCc
Confidence            77753 4677888888887764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.78  E-value=9.1e-06  Score=74.88  Aligned_cols=118  Identities=20%  Similarity=0.200  Sum_probs=73.5

Q ss_pred             ccccccCCCCccEEeeeCC-CCCcc----ccccccCCCCCcEEEccCCCCCC----ccccccCCCCcccEEEccCCcccc
Q 036772          197 LPSSIGNLSRLVRLDLTNC-SRLKS----VSNSLCNLKSLQYLFLSGCLKLE----KLPEEIGNLESLKIMLANETAISQ  267 (583)
Q Consensus       197 lp~~i~~l~~L~~L~L~~~-~~l~~----lp~~l~~l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~  267 (583)
                      +...+...+.|++|+|++| .....    +...+...++|++|++++|....    .+.+.+...++|++|++++|.+.+
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3344667788888888887 44322    44556667788888888876542    223334444555555555554432


Q ss_pred             CccEEEeccCCCcccCccCCCCCCCCEEEc--cCCCCcc-----cChhhhccCcccccccccc
Q 036772          268 NLVDMSLVDCGITELPESLGRSPSLKFLNL--AENDFEK-----IPSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       268 ~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L--s~n~l~~-----lp~~i~~l~~L~~L~L~~c  323 (583)
                      .         ....+...+...++|++|+|  ++|.+..     +...+...++|+.|++++|
T Consensus       108 ~---------g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          108 S---------GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             H---------HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             H---------HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            1         00014556677788999999  7788772     4455666778888888776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.59  E-value=1.5e-05  Score=73.44  Aligned_cols=117  Identities=12%  Similarity=0.114  Sum_probs=83.3

Q ss_pred             cccCCCcCEEeccCC-CCcc-----ccccccCCCCccEEeeeCCCCCcc----ccccccCCCCCcEEEccCCCCCCc---
Q 036772          178 LEISCNIENLDLSET-AIEE-----LPSSIGNLSRLVRLDLTNCSRLKS----VSNSLCNLKSLQYLFLSGCLKLEK---  244 (583)
Q Consensus       178 ~~~~~~L~~L~L~~~-~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~l~~c~~l~~---  244 (583)
                      ....++|++|+|++| .+..     +...+...++|++|+|++|.....    +...+...++|++|++++|.....   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344578999999999 8863     556677889999999999986543    445566678999999999876532   


Q ss_pred             -cccccCCCCcccEEEc--cCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCc
Q 036772          245 -LPEEIGNLESLKIMLA--NETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFE  303 (583)
Q Consensus       245 -lp~~l~~l~~L~~L~l--~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~  303 (583)
                       +.+.+...++|+.|++  ++|.+.+.         ....+...+...++|++|+|++|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~---------g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNN---------VEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHH---------HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHH---------HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence             4556666677777777  55655431         00013445556789999999999875

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.47  E-value=0.013  Score=59.90  Aligned_cols=247  Identities=10%  Similarity=0.123  Sum_probs=121.3

Q ss_pred             CCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCCCC--CCCCCCCcCEEe
Q 036772           46 NELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSRIP--DLSLALNLEWLD  120 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~  120 (583)
                      .+|+.+.+.. .+++++.. | .+.+|+.++++.+ ++.+... |.++ +|+.+.+..+  +..+.  .|.. .+|+.+.
T Consensus        46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~-~~L~~i~  119 (379)
T 4h09_A           46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQG-TDLDDFE  119 (379)
T ss_dssp             GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTT-CCCSEEE
T ss_pred             cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceecc-CCccccc
Confidence            4677777743 46666654 3 6778888888754 6666544 5555 5777766543  33333  2444 3788888


Q ss_pred             eeCCCCchhhhh-hccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCCCcccc---------------cccCC
Q 036772          121 LVGCASLIEIHS-SIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRF---------------LEISC  182 (583)
Q Consensus       121 L~~~~~l~~~~~-~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~---------------~~~~~  182 (583)
                      +...  +..+.. .+.+ .+|+...+..  .++.+....  .+..++...+.........               .....
T Consensus       120 lp~~--~~~i~~~~F~~-~~l~~~~~~~--~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (379)
T 4h09_A          120 FPGA--TTEIGNYIFYN-SSVKRIVIPK--SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK  194 (379)
T ss_dssp             CCTT--CCEECTTTTTT-CCCCEEEECT--TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred             CCCc--ccccccccccc-ceeeeeeccc--eeeccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence            7653  223332 2333 3455555543  233333322  5666666666543221100               00111


Q ss_pred             CcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCcc-ccccCCCCcccEEEcc
Q 036772          183 NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKL-PEEIGNLESLKIMLAN  261 (583)
Q Consensus       183 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l-p~~l~~l~~L~~L~l~  261 (583)
                      .+..+.+...........+..+.+|+.+.+... ....-...+..+..|+.+.+..+  +..+ ...+.++.+|+.+.+.
T Consensus       195 ~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~  271 (379)
T 4h09_A          195 TGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFY  271 (379)
T ss_dssp             CCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEEC
T ss_pred             cccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccc
Confidence            233333322221112223455666777666542 11112334556677777776542  2222 2234455566655543


Q ss_pred             CCccccCccEEEeccCCCcccC-ccCCCCCCCCEEEccCCCCcccCh-hhhccCcccccccc
Q 036772          262 ETAISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNLAENDFEKIPS-SIKQLSNLLFLTLQ  321 (583)
Q Consensus       262 ~~~i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-~i~~l~~L~~L~L~  321 (583)
                      .+               +..++ ..+..+++|+.+.+.++.++.++. .+..+.+|+.+.|.
T Consensus       272 ~~---------------i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          272 AK---------------VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             CC---------------CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             cc---------------ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            22               12222 244555666666666555555542 34455555555553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.41  E-value=0.033  Score=56.79  Aligned_cols=279  Identities=10%  Similarity=0.082  Sum_probs=153.5

Q ss_pred             CCCCcceEEEecCCCCCCccceecCC-cccccCCCccEEEecCCCCCCCCCC-CCCCCceEEEccCCChhhhccc-ccCC
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSR-CLESFFNELRYFQWDGYPLKSLPSK-NIPEHLVSLEMPHSNIEQLWNG-VQNL   90 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~-~l~~l~~~Lr~L~l~~~~l~~lp~~-~~~~~L~~L~L~~~~l~~l~~~-~~~l   90 (583)
                      ...+|+.+.|..       ....+++ .|... .+|+.+.+.. .++.++.. |.-.+|..+.+.. +++.+... +.. 
T Consensus        44 ~~~~i~~v~ip~-------~vt~Ig~~aF~~C-~~L~~I~lp~-~v~~Ig~~aF~~c~l~~i~~~~-~l~~I~~~aF~~-  112 (379)
T 4h09_A           44 DRDRISEVRVNS-------GITSIGEANFNSC-YNMTKVTVAS-TVTSIGDGAFADTKLQSYTGME-RVKKFGDYVFQG-  112 (379)
T ss_dssp             GGGGCSEEEECT-------TEEEECTTTTTTC-TTCCEEEECT-TCCEECTTTTTTCCCCEEEECT-TCCEECTTTTTT-
T ss_pred             cccCCEEEEeCC-------CccChHHHHhhCC-CCCCEEEeCC-cceEechhhhcCCCCceEECCc-eeeEeccceecc-
Confidence            445677777754       3445554 45555 5899999864 37777655 3333677777764 36666554 443 


Q ss_pred             CCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCchhh-hhhccCCCCCCEEEccCCCCCCcCCC-----------
Q 036772           91 AALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGCASLIEI-HSSIQHLNKLVFLNLGRCISLKSLPT-----------  156 (583)
Q Consensus        91 ~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~-~~~i~~l~~L~~L~L~~c~~l~~lp~-----------  156 (583)
                      .+|+.+.+..+  ...+.  .|.. .+|+.+.+...  +..+ ...+..+.+++...+...........           
T Consensus       113 ~~L~~i~lp~~--~~~i~~~~F~~-~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (379)
T 4h09_A          113 TDLDDFEFPGA--TTEIGNYIFYN-SSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTIL  187 (379)
T ss_dssp             CCCSEEECCTT--CCEECTTTTTT-CCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEE
T ss_pred             CCcccccCCCc--ccccccccccc-ceeeeeeccce--eeccccchhcccccccccccccccceeecccceeccccccee
Confidence            47888888764  22222  2333 35666665542  2222 23455667777766654322111100           


Q ss_pred             -cC-CCCCccEEEecCCCCcc--cccccCCCcCEEeccCCCCcccc-ccccCCCCccEEeeeCCCCCccc-cccccCCCC
Q 036772          157 -GI-NLDSLKVLYLGGCSNLK--RFLEISCNIENLDLSETAIEELP-SSIGNLSRLVRLDLTNCSRLKSV-SNSLCNLKS  230 (583)
Q Consensus       157 -~~-~l~~L~~L~L~~c~~l~--~~~~~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~~~~l~~l-p~~l~~l~~  230 (583)
                       .+ ....+..+.+.......  .......+++.+.+..+ ++.+. ..+..+..|+.+.+..+  +..+ ...+.++..
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~  264 (379)
T 4h09_A          188 ESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTA  264 (379)
T ss_dssp             EECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTT
T ss_pred             ccccccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeeh
Confidence             01 22333333332211100  01112235566655433 34443 34667888888888653  3333 345667888


Q ss_pred             CcEEEccCCCCCCcccc-ccCCCCcccEEEccCCccccCccEEEeccCCCcccC-ccCCCCCCCCEEEccCCCCcccCh-
Q 036772          231 LQYLFLSGCLKLEKLPE-EIGNLESLKIMLANETAISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNLAENDFEKIPS-  307 (583)
Q Consensus       231 L~~L~l~~c~~l~~lp~-~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~-  307 (583)
                      |+.+.+...  +..++. .+..+.+|+.+.+.++.              ++.++ ..+..+.+|+.+.|..+ ++.|+. 
T Consensus       265 l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~--------------i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~  327 (379)
T 4h09_A          265 LKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSA--------------IETLEPRVFMDCVKLSSVTLPTA-LKTIQVY  327 (379)
T ss_dssp             CCEEEECCC--CSEECTTTTTTCTTCCEEEECCTT--------------CCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred             hcccccccc--ceeccccccccccccccccccccc--------------cceehhhhhcCCCCCCEEEcCcc-ccEEHHH
Confidence            888888642  333333 45667777766655443              34454 56788999999999653 676654 


Q ss_pred             hhhccCcccccccccccccccCC
Q 036772          308 SIKQLSNLLFLTLQNCKRLQSLP  330 (583)
Q Consensus       308 ~i~~l~~L~~L~L~~c~~L~~lp  330 (583)
                      .+..|++|+.+.+..  .++.|.
T Consensus       328 aF~~C~~L~~i~ip~--~v~~I~  348 (379)
T 4h09_A          328 AFKNCKALSTISYPK--SITLIE  348 (379)
T ss_dssp             TTTTCTTCCCCCCCT--TCCEEC
T ss_pred             HhhCCCCCCEEEECC--ccCEEc
Confidence            466777777777643  244443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.32  E-value=9.8e-05  Score=71.84  Aligned_cols=93  Identities=20%  Similarity=0.174  Sum_probs=46.9

Q ss_pred             EEccCCChhhhccc----ccCCCCccEEeccCCCCCC--CCCC-CCCCCCcCEEeeeCCCCchhhhhhccCCC--CCCEE
Q 036772           73 LEMPHSNIEQLWNG----VQNLAALKRLNLSYCKQLS--RIPD-LSLALNLEWLDLVGCASLIEIHSSIQHLN--KLVFL  143 (583)
Q Consensus        73 L~L~~~~l~~l~~~----~~~l~~L~~L~Ls~~~~l~--~~p~-l~~l~~L~~L~L~~~~~l~~~~~~i~~l~--~L~~L  143 (583)
                      ++++.|....++..    ..++++|+.|+|++|++..  .+|+ +..+++|+.|+|++|.....  ..+..+.  +|+.|
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L  225 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL  225 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence            44555544433221    1456666777777665433  2222 34566677777766554332  1222222  67777


Q ss_pred             EccCCCCCCcCCCc-------C-CCCCccEEE
Q 036772          144 NLGRCISLKSLPTG-------I-NLDSLKVLY  167 (583)
Q Consensus       144 ~L~~c~~l~~lp~~-------~-~l~~L~~L~  167 (583)
                      +|++|..-..+|..       + .+++|+.||
T Consensus       226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             EccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            77665443334421       1 466666664

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.05  E-value=0.00032  Score=68.17  Aligned_cols=79  Identities=28%  Similarity=0.165  Sum_probs=53.7

Q ss_pred             CCCCceEEEccCCChhhhc---ccccCCCCccEEeccCCCCCCCCCCCCCCC--CcCEEeeeCCCCchhhh-------hh
Q 036772           66 IPEHLVSLEMPHSNIEQLW---NGVQNLAALKRLNLSYCKQLSRIPDLSLAL--NLEWLDLVGCASLIEIH-------SS  133 (583)
Q Consensus        66 ~~~~L~~L~L~~~~l~~l~---~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~--~L~~L~L~~~~~l~~~~-------~~  133 (583)
                      .+++|++|+|++|++..+.   ..+..+++|+.|+|++|++.. +.++..+.  +|++|+|++|.....+|       ..
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-GGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-chhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            3567788888888777543   345678888888888886543 33333333  88888888887654332       34


Q ss_pred             ccCCCCCCEEEc
Q 036772          134 IQHLNKLVFLNL  145 (583)
Q Consensus       134 i~~l~~L~~L~L  145 (583)
                      +..+++|+.||=
T Consensus       247 l~~~P~L~~LDg  258 (267)
T 3rw6_A          247 RERFPKLLRLDG  258 (267)
T ss_dssp             HHHCTTCCEESS
T ss_pred             HHHCcccCeECC
Confidence            678899998874

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.53  E-value=0.017  Score=49.30  Aligned_cols=52  Identities=25%  Similarity=0.332  Sum_probs=34.4

Q ss_pred             EEEecCCCCC--CCCCCCCCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCC
Q 036772           50 YFQWDGYPLK--SLPSKNIPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCK  102 (583)
Q Consensus        50 ~L~l~~~~l~--~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~  102 (583)
                      .++.++..++  ++|.. .+++|++|+|++|+|+.++.+ +..+++|+.|+|++|.
T Consensus        12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            5666666776  77754 344577777777777777654 5666777777777664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.42  E-value=0.013  Score=53.79  Aligned_cols=107  Identities=18%  Similarity=0.180  Sum_probs=52.2

Q ss_pred             ccCCCCccEEeeeCCCCCcc-----ccccccCCCCCcEEEccCCCCCC----ccccccCCCCcccEEEccCCccccCccE
Q 036772          201 IGNLSRLVRLDLTNCSRLKS-----VSNSLCNLKSLQYLFLSGCLKLE----KLPEEIGNLESLKIMLANETAISQNLVD  271 (583)
Q Consensus       201 i~~l~~L~~L~L~~~~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~~L~~  271 (583)
                      +.+-+.|+.|+|++++.+..     +-..+..-+.|+.|+|++|....    .+-+.+..-+.              |+.
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~t--------------L~~  102 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPS--------------LRV  102 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSS--------------CCE
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCc--------------cCe
Confidence            34456677777766422221     23344445566666666654331    12222223333              444


Q ss_pred             EEeccCCCcc-----cCccCCCCCCCCEEEccCCC---Cc-----ccChhhhccCcccccccc
Q 036772          272 MSLVDCGITE-----LPESLGRSPSLKFLNLAEND---FE-----KIPSSIKQLSNLLFLTLQ  321 (583)
Q Consensus       272 L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~---l~-----~lp~~i~~l~~L~~L~L~  321 (583)
                      |+|++|.+.+     +-+.+..-+.|++|+|++|.   +.     .+...+..-+.|+.|+++
T Consensus       103 L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~  165 (197)
T 1pgv_A          103 LNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS  165 (197)
T ss_dssp             EECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             EecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence            4444444443     34455556678888887653   22     122334444555555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.05  E-value=0.062  Score=45.78  Aligned_cols=50  Identities=22%  Similarity=0.308  Sum_probs=28.9

Q ss_pred             EEeccCCCc--ccCccCCCCCCCCEEEccCCCCcccChh-hhccCcccccccccc
Q 036772          272 MSLVDCGIT--ELPESLGRSPSLKFLNLAENDFEKIPSS-IKQLSNLLFLTLQNC  323 (583)
Q Consensus       272 L~L~~~~l~--~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c  323 (583)
                      ++-++.+++  .+|..+  .++|+.|+|++|.|+.+|.. +..+++|+.|+|++|
T Consensus        13 v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           13 VDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             EECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             EEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            344444444  455432  23567777777777766644 455666666666655

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.04  E-value=0.026  Score=51.82  Aligned_cols=112  Identities=13%  Similarity=0.131  Sum_probs=74.8

Q ss_pred             cCCCcCEEeccCC-CCcc-----ccccccCCCCccEEeeeCCCCCcc----ccccccCCCCCcEEEccCCCCCC----cc
Q 036772          180 ISCNIENLDLSET-AIEE-----LPSSIGNLSRLVRLDLTNCSRLKS----VSNSLCNLKSLQYLFLSGCLKLE----KL  245 (583)
Q Consensus       180 ~~~~L~~L~L~~~-~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~l~~c~~l~----~l  245 (583)
                      .-+.|++|+|+++ .|..     +-..+..-+.|+.|+|++|.....    +...+..-+.|++|+|++|....    .+
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3467999999985 7752     555677788999999999987543    44455567899999999987653    23


Q ss_pred             ccccCCCCcccEEEccCCccccCccEEEeccCCCcc-----cCccCCCCCCCCEEEccCCCC
Q 036772          246 PEEIGNLESLKIMLANETAISQNLVDMSLVDCGITE-----LPESLGRSPSLKFLNLAENDF  302 (583)
Q Consensus       246 p~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l  302 (583)
                      -+.+..-+.|+.|+++++...           .+.+     +-..+..-+.|+.|+++.+.+
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~-----------~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQS-----------VLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSC-----------CCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHhhCCceeEEECCCCcCc-----------CcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            344555566777766543210           1111     333445567889999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	583
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	1e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.6 bits (135), Expect = 2e-09
 Identities = 44/277 (15%), Positives = 83/277 (29%), Gaps = 23/277 (8%)

Query: 93  LKRLNLSYCKQLSRIPDLSLA--LNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCIS 150
              L+L    +++ I D       NL  L L+          +   L KL  L L +   
Sbjct: 33  TALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-Q 90

Query: 151 LKSLPTGINLD--SLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLV 208
           LK LP  +      L+V         K        +  ++L    ++      G    + 
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 209 RLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKI----------M 258
           +L     +     +       SL  L L G    +     +  L +L            +
Sbjct: 151 KLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 210

Query: 259 LANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFL 318
                A + +L ++ L +  + ++P  L     ++ + L  N+   I S+        F 
Sbjct: 211 DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND-------FC 263

Query: 319 TLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTL 355
                 +  S   +   SN    +     T   +   
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR 300

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.8 bits (133), Expect = 4e-09
 Identities = 36/205 (17%), Positives = 70/205 (34%), Gaps = 15/205 (7%)

Query: 179 EISCNIENLDLSETAIEEL-PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLS 237
           ++  +   LDL    I E+      NL  L  L L N    K    +   L  L+ L+LS
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 238 GCLKLEKLPEEIG-----------NLESLKIMLANETAISQNLVDMSLVDCGITELPESL 286
              +L++LPE++             +  ++  + N       +   +           + 
Sbjct: 88  KN-QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 287 GRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSL 346
                L ++ +A+ +   IP  +    +L  L L   K  +       G N  A+   S 
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 347 ETLSNLSTLFTRSSELWQAFDFCNC 371
            ++S +      ++   +     N 
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNN 229

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.1 bits (113), Expect = 1e-06
 Identities = 45/264 (17%), Positives = 88/264 (33%), Gaps = 20/264 (7%)

Query: 102 KQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NL 160
             L ++P   L  +   LDL             ++L  L  L L      K  P     L
Sbjct: 20  LGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL 78

Query: 161 DSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIG---NLSRLVRLDLTNCSR 217
             L+ LYL      +   ++   ++ L + E  I ++  S+    N   +V L       
Sbjct: 79  VKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 138

Query: 218 LKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDC 277
               + +   +K L Y+ ++    +  +P+  G   SL  +  +   I++          
Sbjct: 139 SGIENGAFQGMKKLSYIRIADT-NITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLN 195

Query: 278 GITELPESLGR-----------SPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRL 326
            + +L  S              +P L+ L+L  N   K+P  +     +  + L N   +
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN-NI 254

Query: 327 QSLPELPCGSNIFARYCTSLETLS 350
            ++         +     S   +S
Sbjct: 255 SAIGSNDFCPPGYNTKKASYSGVS 278

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.6 bits (130), Expect = 2e-08
 Identities = 47/228 (20%), Positives = 76/228 (33%), Gaps = 23/228 (10%)

Query: 73  LEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHS 132
                SN     + +  L  L+ L  +   Q+S I  L +  NL+ L L G    ++   
Sbjct: 179 RLDISSNKVSDISVLAKLTNLESLIATNN-QISDITPLGILTNLDELSLNGN--QLKDIG 235

Query: 133 SIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSET 192
           ++  L  L  L+L     + +L     L  L  L LG                       
Sbjct: 236 TLASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE 294

Query: 193 AIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNL 252
              E  S I NL  L  L L     +  +S  + +L  LQ LF +   K+  +   + NL
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFN-NISDIS-PVSSLTKLQRLFFANN-KVSDVSS-LANL 350

Query: 253 ESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAEN 300
            ++  +              S     I++L   L     +  L L + 
Sbjct: 351 TNINWL--------------SAGHNQISDLTP-LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 3e-06
 Identities = 33/177 (18%), Positives = 64/177 (36%), Gaps = 20/177 (11%)

Query: 180 ISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGC 239
           I  N++ L L+   ++++ + + +L+ L  LDL N     S    L  L  L  L L   
Sbjct: 217 ILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQ--ISNLAPLSGLTKLTELKLGAN 273

Query: 240 LKLEKLPEEIGNLESLKIMLANETAISQN------LVDMSLVDCGITELPESLGRSPSLK 293
                 P       +   +  N+            L  ++L    I+++   +     L+
Sbjct: 274 QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQ 332

Query: 294 FLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLS 350
            L  A N    + S +  L+N+ +L+  +  ++  L  L           T +  L 
Sbjct: 333 RLFFANNKVSDVSS-LANLTNINWLSAGHN-QISDLTPL--------ANLTRITQLG 379

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 4e-07
 Identities = 40/244 (16%), Positives = 78/244 (31%), Gaps = 41/244 (16%)

Query: 66  IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLAL--NLEWLDLVG 123
           + + +++   P S ++Q      +   ++ ++LS            L+    L+ L L G
Sbjct: 21  LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80

Query: 124 CASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLY---------------- 167
                 I +++   + LV LNL  C           L S   L                 
Sbjct: 81  LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 140

Query: 168 --------------LGGCSNLKRFLEISCNIE--------NLDLSETAIEELPSSIGNLS 205
                         L G     +  ++S  +         +L  S     +       L+
Sbjct: 141 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 200

Query: 206 RLVRLDLTNCSRLKSVS-NSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETA 264
            L  L L+ C  +   +   L  + +L+ L + G +    L      L  L+I  ++ T 
Sbjct: 201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTT 260

Query: 265 ISQN 268
           I++ 
Sbjct: 261 IARP 264

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 182 CNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLK 241
            ++E L++S   + ELP+    L RL     +    L  V     NLK L    +     
Sbjct: 284 PSLEELNVSNNKLIELPALPPRLERL---IASFN-HLAEVPELPQNLKQLH---VEYN-P 335

Query: 242 LEKLPEEIGNLESLKI 257
           L + P+   ++E L++
Sbjct: 336 LREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 4e-06
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 21/90 (23%)

Query: 226 CNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPES 285
               SL+ L +S   KL +LP     LE L                       + E+PE 
Sbjct: 281 DLPPSLEELNVSNN-KLIELPALPPRLERL-----------------IASFNHLAEVPEL 322

Query: 286 LGRSPSLKFLNLAENDFEKIPSSIKQLSNL 315
                +LK L++  N   + P   + + +L
Sbjct: 323 PQ---NLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 5e-05
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 267 QNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRL 326
            +L ++++ +  + ELP      P L+ L  + N   ++P       NL  L ++    L
Sbjct: 284 PSLEELNVSNNKLIELPALP---PRLERLIASFNHLAEVPEL---PQNLKQLHVEYNP-L 336

Query: 327 QSLPELP 333
           +  P++P
Sbjct: 337 REFPDIP 343

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 9e-05
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 148 CISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRL 207
             S +         SL+ L +     L     +   +E L  S   + E+P    NL   
Sbjct: 271 ASSNEIRSLCDLPPSLEELNVSNN-KLIELPALPPRLERLIASFNHLAEVPELPQNLK-- 327

Query: 208 VRLDLTNCSRLKSVSNSLCNLKSLQ 232
            +L +     L+   +   +++ L+
Sbjct: 328 -QLHVEYN-PLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 5/107 (4%)

Query: 268 NLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLS--NLLFLTLQNCKR 325
              ++ L + G++ LPE     P L+ L  + N   ++P   + L    +    L+    
Sbjct: 39  QAHELELNNLGLSSLPELP---PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 95

Query: 326 LQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSELWQAFDFCNCF 372
           L  L E    SN        L+  S L  +   ++ L +  D     
Sbjct: 96  LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL 142

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 27/162 (16%), Positives = 58/162 (35%), Gaps = 13/162 (8%)

Query: 179 EISCNIENLDLSET--AIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFL 236
            ++   E ++L      IE++ +++  L     L L+    ++ +S+ L  +++L+ L L
Sbjct: 20  VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKISS-LSGMENLRILSL 77

Query: 237 SGCLKLEK---------LPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLG 287
              L  +          L E   +   +  +   E  ++  ++ MS          + L 
Sbjct: 78  GRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLA 137

Query: 288 RSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSL 329
               L+ L LA N            S      ++    L+ L
Sbjct: 138 ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 16/130 (12%)

Query: 187 LDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLP 246
           L L+   +  L   +  L  +  LDL++  RL+++  +L  L+ L+ L  S         
Sbjct: 3   LHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNAL----- 55

Query: 247 EEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIP 306
                    + +           + +       +   + L   P L  LNL  N   +  
Sbjct: 56  ---------ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 106

Query: 307 SSIKQLSNLL 316
              ++L+ +L
Sbjct: 107 GIQERLAEML 116

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 13/55 (23%), Positives = 18/55 (32%)

Query: 280 TELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPC 334
             LP+ L +   L  LN++ N+          L         N K L   P   C
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 312

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 34/209 (16%), Positives = 61/209 (29%), Gaps = 12/209 (5%)

Query: 37  HSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGV-QNLAALKR 95
           H  C  S          D   L +LP  ++P+    L +  + +             L +
Sbjct: 1   HPICEVSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQ 59

Query: 96  LNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLP 155
           LNL   +      D +L +           + ++    +      + +       L SLP
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGTL---DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116

Query: 156 TGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAI------EELPSSIGNLSRLVR 209
            G      ++  L    N  + L          L + ++      E     +  L  L  
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176

Query: 210 LDLTNCSRLKSVSNSLCNLKSLQYLFLSG 238
           L L     L ++         L + FL G
Sbjct: 177 LLLQEN-SLYTIPKGFFGSHLLPFAFLHG 204

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 181 SCNIENLDLSETAI--EELPSSIGNLSRLVRLDLTNCS----RLKSVSNSLCNLKSLQYL 234
           S +I++LD+    +        +  L +   + L +C     R K +S++L    +L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 235 FLSGC 239
            L   
Sbjct: 61  NLRSN 65

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 18/164 (10%), Positives = 43/164 (26%), Gaps = 5/164 (3%)

Query: 266 SQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDF-----EKIPSSIKQLSNLLFLTL 320
            ++L   ++       +   L    S+K + L+ N         +  +I    +L     
Sbjct: 7   GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 321 QNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKLNRNEIG 380
            +    +   E+P    +  +       L  +           Q        K    E  
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 381 EIVDGALKKIQVMATWWKQQDPVTLYEDYHNPPRGCVSYPGSEI 424
            + +  L            Q+     +  + PP   +    + +
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 170

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 32/171 (18%), Positives = 63/171 (36%), Gaps = 7/171 (4%)

Query: 68  EHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASL 127
             +  +   +S+I+ +  G+Q L  + +L L+   +L+ I  L+   NL+ L  +     
Sbjct: 46  NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLA---NLKNLGWLFLDEN 100

Query: 128 IEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENL 187
                S     K +         +  +   ++L  L+ LYLG        +       + 
Sbjct: 101 KVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDT 160

Query: 188 DLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSG 238
              E         +  L++L  L L+    +  +  +L  LK+L  L L  
Sbjct: 161 LSLEDNQISDIVPLAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFS 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	583
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.89
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.87
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.86
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.85
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.83
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.76
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.75
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.75
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.73
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.71
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.61
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.58
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.55
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.54
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.51
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.48
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.47
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.38
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.34
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.33
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.27
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.22
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.21
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.21
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.13
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.13
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.01
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.92
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.87
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.81
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.71
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.0
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.92
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.84
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.39
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.88
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.78

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.89  E-value=7.7e-22  Score=202.96  Aligned_cols=314  Identities=19%  Similarity=0.228  Sum_probs=197.3

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCc
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAAL   93 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L   93 (583)
                      .+.+|+.|+++++.+      ..+ +++..+ ++|++|++++|.++.+|+.-.+++|++|++++|.+..++. +..+++|
T Consensus        42 ~l~~l~~L~l~~~~I------~~l-~gl~~L-~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L  112 (384)
T d2omza2          42 DLDQVTTLQADRLGI------KSI-DGVEYL-NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNL  112 (384)
T ss_dssp             HHTTCCEEECCSSCC------CCC-TTGGGC-TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred             HhCCCCEEECCCCCC------CCc-cccccC-CCCCEEeCcCCcCCCCccccCCcccccccccccccccccc-ccccccc
Confidence            456777777776632      223 466666 4777777777777777764467777777777777776643 6777777


Q ss_pred             cEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhh-------------------hhhccCCCCCCEEEccCCCCCCcC
Q 036772           94 KRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEI-------------------HSSIQHLNKLVFLNLGRCISLKSL  154 (583)
Q Consensus        94 ~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~-------------------~~~i~~l~~L~~L~L~~c~~l~~l  154 (583)
                      +.|+++++... ..+.......+..+....+......                   ...+.............+ .....
T Consensus       113 ~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  190 (384)
T d2omza2         113 TGLTLFNNQIT-DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDI  190 (384)
T ss_dssp             CEEECCSSCCC-CCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCC
T ss_pred             ccccccccccc-ccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccc-ccccc
Confidence            77777766433 3333333344444444332111000                   011112222222222221 11111


Q ss_pred             CCcCCCCCccEEEecCCCCccccc-ccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcE
Q 036772          155 PTGINLDSLKVLYLGGCSNLKRFL-EISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQY  233 (583)
Q Consensus       155 p~~~~l~~L~~L~L~~c~~l~~~~-~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~  233 (583)
                      .....+++++.+++++|..-...+ ....+|+.|++++|.++.++ .+..+++|+.|++++|.... ++ .+..+++|++
T Consensus       191 ~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~-~~-~~~~~~~L~~  267 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISN-LA-PLSGLTKLTE  267 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCSE
T ss_pred             cccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCC-CC-cccccccCCE
Confidence            111157788888888764332222 33467888888888888776 47788888888888876543 33 3677888888


Q ss_pred             EEccCCCCCCccccccCCCCcccEEEccCCccccC--------ccEEEeccCCCcccCccCCCCCCCCEEEccCCCCccc
Q 036772          234 LFLSGCLKLEKLPEEIGNLESLKIMLANETAISQN--------LVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKI  305 (583)
Q Consensus       234 L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~--------L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l  305 (583)
                      |+++++... .++ .+..++.++.+.+..+.+...        ++.|++++|++++++. +..+++|++|++++|.++.+
T Consensus       268 L~l~~~~l~-~~~-~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l  344 (384)
T d2omza2         268 LKLGANQIS-NIS-PLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDV  344 (384)
T ss_dssp             EECCSSCCC-CCG-GGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred             eeccCcccC-CCC-ccccccccccccccccccccccccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCCC
Confidence            888876543 333 366777888888888776532        7888888888888753 77889999999999999887


Q ss_pred             ChhhhccCcccccccccccccccCCCCCCCCeeeeeCCcCcccccCccccccccc
Q 036772          306 PSSIKQLSNLLFLTLQNCKRLQSLPELPCGSNIFARYCTSLETLSNLSTLFTRSS  360 (583)
Q Consensus       306 p~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~~l~~~~c~sL~~l~~l~~l~~~~~  360 (583)
                      + .++.+++|+.|++++| +++.++              .+..+++|+.+.++.|
T Consensus       345 ~-~l~~l~~L~~L~l~~N-~l~~l~--------------~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         345 S-SLANLTNINWLSAGHN-QISDLT--------------PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             G-GGGGCTTCCEEECCSS-CCCBCG--------------GGTTCTTCSEEECCCE
T ss_pred             h-hHcCCCCCCEEECCCC-cCCCCh--------------hhccCCCCCEeeCCCC
Confidence            7 5888999999999887 455544              2445556666655443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=1e-20  Score=194.43  Aligned_cols=307  Identities=19%  Similarity=0.264  Sum_probs=222.7

Q ss_pred             ccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeee
Q 036772           43 SFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLV  122 (583)
Q Consensus        43 ~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~  122 (583)
                      .+ .+|+.|++++++++++...-.+++|++|++++|+++.++. ++++++|++|++++|+. ..++.++.+++|+.|++.
T Consensus        42 ~l-~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i-~~i~~l~~l~~L~~L~~~  118 (384)
T d2omza2          42 DL-DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI-ADITPLANLTNLTGLTLF  118 (384)
T ss_dssp             HH-TTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECC
T ss_pred             Hh-CCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCcc-ccCCccccccccccccc-cccccccccccccccccc
Confidence            45 5899999999999998654478999999999999999874 89999999999999964 456678999999999999


Q ss_pred             CCCCchhhhhhccCCCCCCEEEccCCCCCCcCC--------------------CcC-CCCCccEEEecCCCC-ccccccc
Q 036772          123 GCASLIEIHSSIQHLNKLVFLNLGRCISLKSLP--------------------TGI-NLDSLKVLYLGGCSN-LKRFLEI  180 (583)
Q Consensus       123 ~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp--------------------~~~-~l~~L~~L~L~~c~~-l~~~~~~  180 (583)
                      ++......+  ......+..+....+ .+..+.                    ..+ ............+.. .......
T Consensus       119 ~~~~~~~~~--~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (384)
T d2omza2         119 NNQITDIDP--LKNLTNLNRLELSSN-TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK  195 (384)
T ss_dssp             SSCCCCCGG--GTTCTTCSEEEEEEE-EECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred             ccccccccc--ccccccccccccccc-cccccccccccccccccccccccchhhhhcccccccccccccccccccccccc
Confidence            876443222  233445555544321 110000                    001 222333333333222 2233455


Q ss_pred             CCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEc
Q 036772          181 SCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLA  260 (583)
Q Consensus       181 ~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l  260 (583)
                      ..+++.++++++.++.+++ ....++|+.|++++|... .++ .+..+++|+.|++++|... .++ .+..+++|+.|++
T Consensus       196 l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~-~~~-~~~~~~~L~~L~l  270 (384)
T d2omza2         196 LTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQIS-NLA-PLSGLTKLTELKL  270 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEEC
T ss_pred             ccccceeeccCCccCCCCc-ccccCCCCEEECCCCCCC-Ccc-hhhcccccchhccccCccC-CCC-cccccccCCEeec
Confidence            6789999999999998876 677899999999998653 343 6788999999999998654 444 3788999999999


Q ss_pred             cCCccccC--------ccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccccccccCCCC
Q 036772          261 NETAISQN--------LVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPEL  332 (583)
Q Consensus       261 ~~~~i~~~--------L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l  332 (583)
                      +++.+...        ++.+.+.+|.+.+++ .+..+++++.|++++|+++.++ .+..+++|+.|++++| +++.++  
T Consensus       271 ~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n-~l~~l~--  345 (384)
T d2omza2         271 GANQISNISPLAGLTALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANN-KVSDVS--  345 (384)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSS-CCCCCG--
T ss_pred             cCcccCCCCcccccccccccccccccccccc-ccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCC-CCCCCh--
Confidence            99887643        788999999988754 4788999999999999999887 4889999999999999 566544  


Q ss_pred             CCCCeeeeeCCcCcccccCcccccccccccceeeeecccccCCcc
Q 036772          333 PCGSNIFARYCTSLETLSNLSTLFTRSSELWQAFDFCNCFKLNRN  377 (583)
Q Consensus       333 p~~~~l~~~~c~sL~~l~~l~~l~~~~~~~~~~l~~~~C~~L~~~  377 (583)
                                  .+..+++|+.+.+++|++.....+.++.+|...
T Consensus       346 ------------~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L  378 (384)
T d2omza2         346 ------------SLANLTNINWLSAGHNQISDLTPLANLTRITQL  378 (384)
T ss_dssp             ------------GGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEE
T ss_pred             ------------hHcCCCCCCEEECCCCcCCCChhhccCCCCCEe
Confidence                        345556666666666665443345666666543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=1.9e-20  Score=186.79  Aligned_cols=257  Identities=20%  Similarity=0.216  Sum_probs=169.5

Q ss_pred             CccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCC
Q 036772           47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGC  124 (583)
Q Consensus        47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~  124 (583)
                      .++.+++++..++++|+.+ ++++++|++++|+++.++. .+.++++|++|++++|......|+ |..+++|++|++++|
T Consensus        11 ~~~~~~C~~~~L~~lP~~l-~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             cCCEEEecCCCCCccCCCC-CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            5677888888888888865 4678888888888888876 478888888888888876665553 778888888888887


Q ss_pred             CCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCCCccc-----ccccCCCcCEEeccCCCCccc
Q 036772          125 ASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKR-----FLEISCNIENLDLSETAIEEL  197 (583)
Q Consensus       125 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~-----~~~~~~~L~~L~L~~~~i~~l  197 (583)
                      . +..+|..  ....++.|++.+ +.+..++...  ....+..++...+.....     ......+|+.++++++.+..+
T Consensus        90 ~-l~~l~~~--~~~~l~~L~~~~-n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          90 Q-LKELPEK--MPKTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             C-CSBCCSS--CCTTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             c-cCcCccc--hhhhhhhhhccc-cchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence            5 4455543  345778888777 3455555433  455666666665432221     123345667777777777766


Q ss_pred             cccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccC
Q 036772          198 PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDC  277 (583)
Q Consensus       198 p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~  277 (583)
                      |..+  +++|+.|++++|......+..+.+++.++.|++++|......+..+.++++|++|++++|              
T Consensus       166 ~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N--------------  229 (305)
T d1xkua_         166 PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN--------------  229 (305)
T ss_dssp             CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS--------------
T ss_pred             Cccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccc--------------
Confidence            6533  567777777777666666666777777777777776554444555555555554444443              


Q ss_pred             CCcccCccCCCCCCCCEEEccCCCCcccChh-------hhccCccccccccccc
Q 036772          278 GITELPESLGRSPSLKFLNLAENDFEKIPSS-------IKQLSNLLFLTLQNCK  324 (583)
Q Consensus       278 ~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~-------i~~l~~L~~L~L~~c~  324 (583)
                      +++.+|..+..+++|++|+|++|+++.++..       ...+.+|+.|+|++|+
T Consensus       230 ~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         230 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             cccccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            3444676777777777777777777766432       2334566666666653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.85  E-value=1.1e-21  Score=196.76  Aligned_cols=247  Identities=19%  Similarity=0.188  Sum_probs=183.6

Q ss_pred             CCceEEEccCCChh---hhcccccCCCCccEEeccC-CCCCCCCC-CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCE
Q 036772           68 EHLVSLEMPHSNIE---QLWNGVQNLAALKRLNLSY-CKQLSRIP-DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVF  142 (583)
Q Consensus        68 ~~L~~L~L~~~~l~---~l~~~~~~l~~L~~L~Ls~-~~~l~~~p-~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~  142 (583)
                      .++++|+|+++.+.   .+|..+.++++|++|+|++ |.....+| .++++++|++|+|++|......+..+..+.+|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            35788888887776   4677788888888888876 45555666 4788888888888887766666667778888888


Q ss_pred             EEccCCCCCCcCCCcC-CCCCccEEEecCCCCcccccccCC----CcCEEeccCCCCccc-cccccCCCCccEEeeeCCC
Q 036772          143 LNLGRCISLKSLPTGI-NLDSLKVLYLGGCSNLKRFLEISC----NIENLDLSETAIEEL-PSSIGNLSRLVRLDLTNCS  216 (583)
Q Consensus       143 L~L~~c~~l~~lp~~~-~l~~L~~L~L~~c~~l~~~~~~~~----~L~~L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~  216 (583)
                      +++++|.....+|..+ .++.|+++++++|.....+|....    .++.+++++|.++.. |..++.+..+ .+++.++.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~  208 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM  208 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred             cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            8888877777777777 788888888888765555554432    236677888877744 4455555444 68888887


Q ss_pred             CCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEE
Q 036772          217 RLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLN  296 (583)
Q Consensus       217 ~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~  296 (583)
                      ....+|..+..+++|+.+++++|.....+| .++.+++|+.|++++|++..             .+|..++.+++|++|+
T Consensus       209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g-------------~iP~~l~~L~~L~~L~  274 (313)
T d1ogqa_         209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYG-------------TLPQGLTQLKFLHSLN  274 (313)
T ss_dssp             EEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEE-------------CCCGGGGGCTTCCEEE
T ss_pred             cccccccccccccccccccccccccccccc-ccccccccccccCccCeecc-------------cCChHHhCCCCCCEEE
Confidence            777788888888999999998887655444 56677776666665555442             3899999999999999


Q ss_pred             ccCCCCc-ccChhhhccCcccccccccccccccCC
Q 036772          297 LAENDFE-KIPSSIKQLSNLLFLTLQNCKRLQSLP  330 (583)
Q Consensus       297 Ls~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp  330 (583)
                      |++|+++ .+|. ++++++|+.+++++|+.+...|
T Consensus       275 Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         275 VSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             CCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTT
T ss_pred             CcCCcccccCCC-cccCCCCCHHHhCCCccccCCC
Confidence            9999998 7884 5788999999999987766544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=9.3e-19  Score=174.35  Aligned_cols=256  Identities=17%  Similarity=0.197  Sum_probs=197.8

Q ss_pred             ceecCCcccccCCCccEEEecCCCCCCCCCC-C-CCCCceEEEccCCChhhhc-ccccCCCCccEEeccCCCCCCCCCCC
Q 036772           34 KVRHSRCLESFFNELRYFQWDGYPLKSLPSK-N-IPEHLVSLEMPHSNIEQLW-NGVQNLAALKRLNLSYCKQLSRIPDL  110 (583)
Q Consensus        34 ~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~-~-~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~~~~l~~~p~l  110 (583)
                      ...+|.+   +|+++++|++++|.++.+|+. | .+++|++|++++|.+..++ ..+.++++|++|++++|+ ++.+|. 
T Consensus        22 L~~lP~~---l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~-   96 (305)
T d1xkua_          22 LEKVPKD---LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPE-   96 (305)
T ss_dssp             CCSCCCS---CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCS-
T ss_pred             CCccCCC---CCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCcc-
Confidence            3455654   467899999999999999964 5 7899999999999999884 559999999999999996 445553 


Q ss_pred             CCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCC--cCCCcC-CCCCccEEEecCCCCccccc-ccCCCcCE
Q 036772          111 SLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLK--SLPTGI-NLDSLKVLYLGGCSNLKRFL-EISCNIEN  186 (583)
Q Consensus       111 ~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~--~lp~~~-~l~~L~~L~L~~c~~l~~~~-~~~~~L~~  186 (583)
                      .....|+.|.+.++......+..+.....++.++...+....  ..+..+ .+++|+.+++++|.. ..++ ....+|+.
T Consensus        97 ~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l-~~l~~~~~~~L~~  175 (305)
T d1xkua_          97 KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLPPSLTE  175 (305)
T ss_dssp             SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSSCCTTCSE
T ss_pred             chhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc-cccCcccCCccCE
Confidence            234689999999977655555567778888999887753322  223333 689999999998754 3343 44579999


Q ss_pred             EeccCCCCccc-cccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcc
Q 036772          187 LDLSETAIEEL-PSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAI  265 (583)
Q Consensus       187 L~L~~~~i~~l-p~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i  265 (583)
                      |+++++.+... +..+..++.+++|++++|......+..+.++++|++|++++| .+..+|+.+..+++|+.|++++|+|
T Consensus       176 L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~i  254 (305)
T d1xkua_         176 LHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNI  254 (305)
T ss_dssp             EECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCC
T ss_pred             EECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccc-cccccccccccccCCCEEECCCCcc
Confidence            99999988854 567899999999999999877767788899999999999998 5667898999999999988888876


Q ss_pred             ccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCc
Q 036772          266 SQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFE  303 (583)
Q Consensus       266 ~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~  303 (583)
                      ...      .... -..+.....+++|+.|+|++|.++
T Consensus       255 ~~i------~~~~-f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         255 SAI------GSND-FCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCC------CTTS-SSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             Ccc------Chhh-ccCcchhcccCCCCEEECCCCcCc
Confidence            541      0000 001233456789999999999987

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.82  E-value=1.4e-20  Score=188.63  Aligned_cols=241  Identities=20%  Similarity=0.189  Sum_probs=156.8

Q ss_pred             CccEEEecCCCCC---CCCCCC-CCCCceEEEccC-CChh-hhcccccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEE
Q 036772           47 ELRYFQWDGYPLK---SLPSKN-IPEHLVSLEMPH-SNIE-QLWNGVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWL  119 (583)
Q Consensus        47 ~Lr~L~l~~~~l~---~lp~~~-~~~~L~~L~L~~-~~l~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L  119 (583)
                      +++.|+++++.+.   .+|+.+ .+++|++|++++ |++. .+|..+.++++|++|+|++|+.....+. +..+++|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            4566666666554   355544 566666666654 4555 5666666666666666666655544442 5556666666


Q ss_pred             eeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC-CCCCc-cEEEecCCCCcccccccCC--CcCEEeccCCCCc
Q 036772          120 DLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI-NLDSL-KVLYLGGCSNLKRFLEISC--NIENLDLSETAIE  195 (583)
Q Consensus       120 ~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~-~l~~L-~~L~L~~c~~l~~~~~~~~--~L~~L~L~~~~i~  195 (583)
                      ++++|.....+|.+++.+++|+.++++++.....+|..+ .+..+ +.+++++|......|..+.  ....+++..+...
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~  210 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE  210 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            666666666666666666677777766655444566555 44443 5566655443333333333  2334666655554


Q ss_pred             -cccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEe
Q 036772          196 -ELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSL  274 (583)
Q Consensus       196 -~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L  274 (583)
                       .+|..++.+++|+.+++++|.....+ ..+..+++|+.|++++|...+.+|+.++++++|++|++++|.+..       
T Consensus       211 ~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g-------  282 (313)
T d1ogqa_         211 GDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG-------  282 (313)
T ss_dssp             ECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE-------
T ss_pred             ccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccc-------
Confidence             45666788888888888887765544 467788889999998888777888888888888888777776553       


Q ss_pred             ccCCCcccCccCCCCCCCCEEEccCCCC
Q 036772          275 VDCGITELPESLGRSPSLKFLNLAENDF  302 (583)
Q Consensus       275 ~~~~l~~lp~~l~~l~~L~~L~Ls~n~l  302 (583)
                            .+|. ++.+++|+.+++++|+.
T Consensus       283 ------~iP~-~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         283 ------EIPQ-GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             ------ECCC-STTGGGSCGGGTCSSSE
T ss_pred             ------cCCC-cccCCCCCHHHhCCCcc
Confidence                  2664 57888999999999983

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=8.5e-18  Score=169.88  Aligned_cols=286  Identities=23%  Similarity=0.288  Sum_probs=177.1

Q ss_pred             CCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccE
Q 036772           16 RRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKR   95 (583)
Q Consensus        16 ~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~   95 (583)
                      .+|+.|+++++.      ...+|+    .+++|++|++++|.++++|..  +.+|++|++.+|.++.++.-   .+.|++
T Consensus        38 ~~l~~LdLs~~~------L~~lp~----~~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~l---p~~L~~  102 (353)
T d1jl5a_          38 RQAHELELNNLG------LSSLPE----LPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEY  102 (353)
T ss_dssp             HTCSEEECTTSC------CSCCCS----CCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCE
T ss_pred             cCCCEEEeCCCC------CCCCCC----CCCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhhh---cccccc
Confidence            367888888773      335564    345888888888888888864  46788888888888776531   246888


Q ss_pred             EeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcc
Q 036772           96 LNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLK  175 (583)
Q Consensus        96 L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~  175 (583)
                      |++++|. +..+|.++.+++|++|+++++... ..+   .....+..+.+..+... .....-.++.++.|++.++. ..
T Consensus       103 L~L~~n~-l~~lp~~~~l~~L~~L~l~~~~~~-~~~---~~~~~l~~l~~~~~~~~-~~~~l~~l~~l~~L~l~~n~-~~  175 (353)
T d1jl5a_         103 LGVSNNQ-LEKLPELQNSSFLKIIDVDNNSLK-KLP---DLPPSLEFIAAGNNQLE-ELPELQNLPFLTAIYADNNS-LK  175 (353)
T ss_dssp             EECCSSC-CSSCCCCTTCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSC-CS
T ss_pred             ccccccc-cccccchhhhccceeecccccccc-ccc---cccccccchhhcccccc-ccccccccccceeccccccc-cc
Confidence            8888885 556777788888888888886543 222   23456667777653322 22221267788888888754 33


Q ss_pred             cccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCC----
Q 036772          176 RFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGN----  251 (583)
Q Consensus       176 ~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~----  251 (583)
                      ..+......+.+...+..+..++. ...++.|+.+++++|... .++.   ...++..+.+..+.... .+.....    
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~L~~l~l~~n~~~-~~~~---~~~~l~~~~~~~~~~~~-~~~~~~~l~~~  249 (353)
T d1jl5a_         176 KLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLK-TLPD---LPPSLEALNVRDNYLTD-LPELPQSLTFL  249 (353)
T ss_dssp             SCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCS-SCCS---CCTTCCEEECCSSCCSC-CCCCCTTCCEE
T ss_pred             cccccccccccccccccccccccc-cccccccccccccccccc-cccc---ccccccccccccccccc-ccccccccccc
Confidence            444445556667777776666665 667888888888886543 2332   23445555555543221 1111110    


Q ss_pred             ------------C-CcccEEEccCCccc------cCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCcccChhhhcc
Q 036772          252 ------------L-ESLKIMLANETAIS------QNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFEKIPSSIKQL  312 (583)
Q Consensus       252 ------------l-~~L~~L~l~~~~i~------~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l  312 (583)
                                  + ......++..+.+.      ..|++|++++|.++.+|..   +++|+.|+|++|+++++|..   +
T Consensus       250 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~l~~~---~  323 (353)
T d1jl5a_         250 DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPEL---P  323 (353)
T ss_dssp             ECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCCC---C
T ss_pred             ccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccCccccc---cCCCCEEECCCCcCCccccc---c
Confidence                        0 11122233332222      2377777777777777643   46677777777777777642   4


Q ss_pred             CcccccccccccccccCCCCCCCC
Q 036772          313 SNLLFLTLQNCKRLQSLPELPCGS  336 (583)
Q Consensus       313 ~~L~~L~L~~c~~L~~lp~lp~~~  336 (583)
                      ++|+.|++++|+ ++++|++|.++
T Consensus       324 ~~L~~L~L~~N~-L~~lp~~~~~L  346 (353)
T d1jl5a_         324 QNLKQLHVEYNP-LREFPDIPESV  346 (353)
T ss_dssp             TTCCEEECCSSC-CSSCCCCCTTC
T ss_pred             CCCCEEECcCCc-CCCCCcccccc
Confidence            567777777774 77777666554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.5e-18  Score=166.99  Aligned_cols=215  Identities=22%  Similarity=0.216  Sum_probs=151.6

Q ss_pred             EEEecCCCCCCCCCCCCCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCCCCc
Q 036772           50 YFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGCASL  127 (583)
Q Consensus        50 ~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~~~l  127 (583)
                      .+..++..++++|..+ +..+++|+|++|+++.++.. +.++++|++|+++++......+ .+...+.++.+....+..+
T Consensus        15 ~v~c~~~~L~~iP~~i-p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             EEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EEEcCCCCCCccCCCC-CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            3455666677777643 35677788888877777653 7777788888887775444333 3566677777776655555


Q ss_pred             hhh-hhhccCCCCCCEEEccCCCCCCcCCCc-C-CCCCccEEEecCCCCcccccc----cCCCcCEEeccCCCCccccc-
Q 036772          128 IEI-HSSIQHLNKLVFLNLGRCISLKSLPTG-I-NLDSLKVLYLGGCSNLKRFLE----ISCNIENLDLSETAIEELPS-  199 (583)
Q Consensus       128 ~~~-~~~i~~l~~L~~L~L~~c~~l~~lp~~-~-~l~~L~~L~L~~c~~l~~~~~----~~~~L~~L~L~~~~i~~lp~-  199 (583)
                      ..+ +..+.++++|+.|++++|. +..++.. + ..++|+.++++++. ++.++.    ...+|+.|++++|.++.+++ 
T Consensus        94 ~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~  171 (284)
T d1ozna_          94 RSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPER  171 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ccccchhhcccccCCEEecCCcc-cccccccccchhcccchhhhcccc-ccccChhHhccccchhhcccccCcccccchh
Confidence            544 4567777788888887753 3443333 3 56777777777743 334432    23567778888888887754 


Q ss_pred             cccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCcccc
Q 036772          200 SIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQ  267 (583)
Q Consensus       200 ~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~  267 (583)
                      .+..+++|+.+++++|......|..+.++++|++|++++|......+..++.+++|++|++++|.+..
T Consensus       172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            57788899999999888877778888889999999999888777777788888889988888887653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.9e-17  Score=161.41  Aligned_cols=99  Identities=20%  Similarity=0.158  Sum_probs=73.4

Q ss_pred             CccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcc-cccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCC
Q 036772           47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWN-GVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCA  125 (583)
Q Consensus        47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~  125 (583)
                      .+...+.+++.++++|+.+ +++|++|+|++|+++.++. .+.++++|++|+|++|+ ++.++.++.+++|++|+|++|.
T Consensus        11 ~~~~v~C~~~~L~~iP~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~Ls~N~   88 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ   88 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC
T ss_pred             CCeEEEccCCCCCeeCcCc-CcCCCEEECcCCcCCCcCHHHhhcccccccccccccc-cccccccccccccccccccccc
Confidence            4555688888889998765 4678999999999988875 47889999999999885 4556666777788888888764


Q ss_pred             CchhhhhhccCCCCCCEEEccCC
Q 036772          126 SLIEIHSSIQHLNKLVFLNLGRC  148 (583)
Q Consensus       126 ~l~~~~~~i~~l~~L~~L~L~~c  148 (583)
                       +...+..+..+++|+.|+++++
T Consensus        89 -l~~~~~~~~~l~~L~~L~l~~~  110 (266)
T d1p9ag_          89 -LQSLPLLGQTLPALTVLDVSFN  110 (266)
T ss_dssp             -CSSCCCCTTTCTTCCEEECCSS
T ss_pred             -cccccccccccccccccccccc
Confidence             3344555666666666666664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.5e-17  Score=160.54  Aligned_cols=117  Identities=26%  Similarity=0.231  Sum_probs=64.9

Q ss_pred             CCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEE
Q 036772          193 AIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDM  272 (583)
Q Consensus       193 ~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L  272 (583)
                      .++..+..+..+++|+.|+++++......+..+..+.++++|++++|......+..+..+++|+.+++++|.+       
T Consensus        88 ~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l-------  160 (266)
T d1p9ag_          88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-------  160 (266)
T ss_dssp             CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-------
T ss_pred             cccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc-------
Confidence            3334444445555555555555554444444455555666666665543333333444455544444444433       


Q ss_pred             EeccCCCcccC-ccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccc
Q 036772          273 SLVDCGITELP-ESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNC  323 (583)
Q Consensus       273 ~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c  323 (583)
                             +.++ ..+..+++|++|+|++|+++.+|..+..+++|+.|+|+++
T Consensus       161 -------~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         161 -------TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             -------SCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred             -------cccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCC
Confidence                   3343 4456677777777777777777776666777777777665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.8e-17  Score=159.00  Aligned_cols=216  Identities=23%  Similarity=0.261  Sum_probs=141.3

Q ss_pred             eEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCC
Q 036772           71 VSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRC  148 (583)
Q Consensus        71 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c  148 (583)
                      ..++.++.+++.+|..+.  ..+++|+|++|++. .+|  .|..+++|++|+++++......+..+..+..++.+....+
T Consensus        14 ~~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGIP--AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCSSCCTTCC--TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCCccCCCCC--CCCCEEECcCCcCC-CCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            456778888888887653  57899999999754 444  4889999999999998766555667788899999998887


Q ss_pred             CCCCcCCCcC--CCCCccEEEecCCCCccccc---ccCCCcCEEeccCCCCccccc-cccCCCCccEEeeeCCCCCcccc
Q 036772          149 ISLKSLPTGI--NLDSLKVLYLGGCSNLKRFL---EISCNIENLDLSETAIEELPS-SIGNLSRLVRLDLTNCSRLKSVS  222 (583)
Q Consensus       149 ~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~~---~~~~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp  222 (583)
                      ..++.++...  ++++|++|++++|......+   ....+|+.+++++|.++.+|+ .+..+++|+.|++++|......+
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~  170 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch
Confidence            8888876544  78889999988865422211   223456667777777766653 35566667777776665444444


Q ss_pred             ccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcccC-ccCCCCCCCCEEEccCCC
Q 036772          223 NSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELP-ESLGRSPSLKFLNLAEND  301 (583)
Q Consensus       223 ~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp-~~l~~l~~L~~L~Ls~n~  301 (583)
                      ..+.++++|+++++++|......|..+..+++|+.|++++|.+..              ++ ..++.+++|++|++++|.
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~--------------~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA--------------LPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC--------------CCHHHHTTCTTCCEEECCSSC
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhccccccccccccc--------------ccccccccccccCEEEecCCC
Confidence            555666666666666665555445555555555444444443322              33 344555555555555555


Q ss_pred             Cc
Q 036772          302 FE  303 (583)
Q Consensus       302 l~  303 (583)
                      +.
T Consensus       237 l~  238 (284)
T d1ozna_         237 WV  238 (284)
T ss_dssp             EE
T ss_pred             CC
Confidence            43

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.71  E-value=2.8e-15  Score=150.96  Aligned_cols=279  Identities=22%  Similarity=0.266  Sum_probs=191.9

Q ss_pred             CCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCC
Q 036772           46 NELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCA  125 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~  125 (583)
                      .++++|+++++.++++|+.  +++|++|++++|+++.+|..   +.+|+.|++++|.. +.++++.  +.|++|++++|.
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l-~~l~~lp--~~L~~L~L~~n~  109 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNL-KALSDLP--PLLEYLGVSNNQ  109 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCC-SCCCSCC--TTCCEEECCSSC
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcccccc---hhhhhhhhhhhccc-chhhhhc--cccccccccccc
Confidence            5799999999999999974  67899999999999999875   46899999999854 4444432  479999999976


Q ss_pred             CchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCccc-ccccCCCcCEEeccCCCCccccccccCC
Q 036772          126 SLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKR-FLEISCNIENLDLSETAIEELPSSIGNL  204 (583)
Q Consensus       126 ~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~-~~~~~~~L~~L~L~~~~i~~lp~~i~~l  204 (583)
                       +..+|. ++.+++|+.|+++++ .+...+.  ....+..+.+..+..... .......++.+.+.++....++...   
T Consensus       110 -l~~lp~-~~~l~~L~~L~l~~~-~~~~~~~--~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~---  181 (353)
T d1jl5a_         110 -LEKLPE-LQNSSFLKIIDVDNN-SLKKLPD--LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---  181 (353)
T ss_dssp             -CSSCCC-CTTCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---
T ss_pred             -cccccc-hhhhccceeeccccc-ccccccc--ccccccchhhccccccccccccccccceeccccccccccccccc---
Confidence             456664 688999999999885 4444443  356677777766544332 2344567888999998887766532   


Q ss_pred             CCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccC------ccEEEeccCC
Q 036772          205 SRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQN------LVDMSLVDCG  278 (583)
Q Consensus       205 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~------L~~L~L~~~~  278 (583)
                      ...+.+...+ .....++ ....++.|+.+++++|... .++..   ..++..+.+..+.+...      +....+..+.
T Consensus       182 ~~~~~l~~~~-~~~~~~~-~~~~l~~L~~l~l~~n~~~-~~~~~---~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  255 (353)
T d1jl5a_         182 LSLESIVAGN-NILEELP-ELQNLPFLTTIYADNNLLK-TLPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSENI  255 (353)
T ss_dssp             TTCCEEECCS-SCCSSCC-CCTTCTTCCEEECCSSCCS-SCCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred             cccccccccc-ccccccc-ccccccccccccccccccc-ccccc---ccccccccccccccccccccccccccccccccc
Confidence            2344555544 3334444 3567899999999987543 34432   33455555555444321      2233333222


Q ss_pred             Ccc-----------------cCccCCCCCCCCEEEccCCCCcccChhhhccCcccccccccccccccCCCCCCCC-eeee
Q 036772          279 ITE-----------------LPESLGRSPSLKFLNLAENDFEKIPSSIKQLSNLLFLTLQNCKRLQSLPELPCGS-NIFA  340 (583)
Q Consensus       279 l~~-----------------lp~~l~~l~~L~~L~Ls~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp~~~-~l~~  340 (583)
                      +..                 ++.....+++|++|+|++|.++.+|..   +++|+.|++++| +++++|+++.++ .+..
T Consensus       256 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N-~L~~l~~~~~~L~~L~L  331 (353)
T d1jl5a_         256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFN-HLAEVPELPQNLKQLHV  331 (353)
T ss_dssp             CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCCCCTTCCEEEC
T ss_pred             ccccccccchhcccccccCccccccccCCCCCEEECCCCccCccccc---cCCCCEEECCCC-cCCccccccCCCCEEEC
Confidence            211                 112223468999999999999999964   678999999988 689999888777 7777


Q ss_pred             eCCcCcccccC
Q 036772          341 RYCTSLETLSN  351 (583)
Q Consensus       341 ~~c~sL~~l~~  351 (583)
                      .+++ ++.++.
T Consensus       332 ~~N~-L~~lp~  341 (353)
T d1jl5a_         332 EYNP-LREFPD  341 (353)
T ss_dssp             CSSC-CSSCCC
T ss_pred             cCCc-CCCCCc
Confidence            7764 776654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=3.3e-15  Score=142.96  Aligned_cols=222  Identities=22%  Similarity=0.288  Sum_probs=145.6

Q ss_pred             ccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhccc-ccCCCCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCC
Q 036772           48 LRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNG-VQNLAALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGC  124 (583)
Q Consensus        48 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~  124 (583)
                      .+.++.++..++++|+.+ +.++++|++++|+++.++.. |.++++|++|++++|.....++  .|..++++++|.+..+
T Consensus        10 ~~~i~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SSEEEEESCSCSSCCSCS-CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CCEEEEeCCCCCCcCCCC-CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            478888888999999765 36899999999999999875 7999999999999998776555  4788999999998876


Q ss_pred             CCchhh-hhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccc-ccc
Q 036772          125 ASLIEI-HSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPS-SIG  202 (583)
Q Consensus       125 ~~l~~~-~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~-~i~  202 (583)
                      ..+... +..+..+++|+.|+++++ .+...+....+.+++.+...                  ...++.+..++. .+.
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~~~~~l~~l~~~------------------~~~n~~l~~i~~~~~~  149 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLD------------------IQDNINIHTIERNSFV  149 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESC-CCCSCCCCTTTCBSSCEEEE------------------EESCTTCCEECTTSST
T ss_pred             ccccccccccccccccccccccchh-hhcccccccccccccccccc------------------cccccccccccccccc
Confidence            555544 456789999999999885 56655553344444444321                  112223333322 122


Q ss_pred             CC-CCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccCccEEEeccCCCcc
Q 036772          203 NL-SRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITE  281 (583)
Q Consensus       203 ~l-~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~  281 (583)
                      .+ ..++.|++++|... .++....+..+++++..                                     ++++++++
T Consensus       150 ~~~~~l~~L~l~~n~l~-~i~~~~~~~~~l~~~~~-------------------------------------l~~n~l~~  191 (242)
T d1xwdc1         150 GLSFESVILWLNKNGIQ-EIHNCAFNGTQLDELNL-------------------------------------SDNNNLEE  191 (242)
T ss_dssp             TSBSSCEEEECCSSCCC-EECTTTTTTCCEEEEEC-------------------------------------TTCTTCCC
T ss_pred             cccccceeeeccccccc-ccccccccchhhhcccc-------------------------------------cccccccc
Confidence            23 35666777664432 33332222222222222                                     22334444


Q ss_pred             cCc-cCCCCCCCCEEEccCCCCcccChh-hhccCcccccccccccccccCC
Q 036772          282 LPE-SLGRSPSLKFLNLAENDFEKIPSS-IKQLSNLLFLTLQNCKRLQSLP  330 (583)
Q Consensus       282 lp~-~l~~l~~L~~L~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~~lp  330 (583)
                      +|. .+..+++|++|+|++|+++.+|.. +..+++|+.+++.+   ++.+|
T Consensus       192 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~---l~~lp  239 (242)
T d1xwdc1         192 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---LKKLP  239 (242)
T ss_dssp             CCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES---SSCSC
T ss_pred             ccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC---CCcCC
Confidence            653 467788999999999999988754 56677777776654   44554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=4.4e-15  Score=140.78  Aligned_cols=166  Identities=22%  Similarity=0.278  Sum_probs=78.8

Q ss_pred             CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEc
Q 036772           66 IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNL  145 (583)
Q Consensus        66 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L  145 (583)
                      .+.+|++|++.+++++.+ +++.++++|++|++++|.. ..++.+..+++|+++++++|.. +.+ +.+..+++|+.+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i-~~~~~l~~l~~l~~l~~~~n~~-~~i-~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQI-TDLAPLKNLTKITELELSGNPL-KNV-SAIAGLQSIKTLDL  114 (227)
T ss_dssp             HHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCC-CCCGGGTTCCSCCEEECCSCCC-SCC-GGGTTCTTCCEEEC
T ss_pred             HcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCcee-eccccccccccccccccccccc-ccc-cccccccccccccc
Confidence            445566666666666655 3456666666666666643 3333456666666666665532 222 23555666666666


Q ss_pred             cCCCCCCcCCCcCCCCCccEEEecCCCCcccc-cccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCcccccc
Q 036772          146 GRCISLKSLPTGINLDSLKVLYLGGCSNLKRF-LEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNS  224 (583)
Q Consensus       146 ~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~-~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~  224 (583)
                      ++|.. ..++.....+.++.+.++++...... .....+|+.|+++++.+...+. ++.+++|+.|++++|. ++.++. 
T Consensus       115 ~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~-l~~l~~-  190 (227)
T d1h6ua2         115 TSTQI-TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP-  190 (227)
T ss_dssp             TTSCC-CCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-
T ss_pred             ccccc-cccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchh-hcccccceecccCCCc-cCCChh-
Confidence            55432 22222224555555555543322111 1222334444444444443332 4444555555555443 222221 


Q ss_pred             ccCCCCCcEEEccCC
Q 036772          225 LCNLKSLQYLFLSGC  239 (583)
Q Consensus       225 l~~l~~L~~L~l~~c  239 (583)
                      ++++++|++|++++|
T Consensus       191 l~~l~~L~~L~Ls~N  205 (227)
T d1h6ua2         191 LASLPNLIEVHLKNN  205 (227)
T ss_dssp             GGGCTTCCEEECTTS
T ss_pred             hcCCCCCCEEECcCC
Confidence            344444444444443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.7e-14  Score=136.61  Aligned_cols=188  Identities=19%  Similarity=0.274  Sum_probs=137.5

Q ss_pred             cccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEee
Q 036772           42 ESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDL  121 (583)
Q Consensus        42 ~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L  121 (583)
                      ..+ .+|+.|++.++.+++++..-.+++|++|++++|.+..+.. +..+++|+.+++++|. .+.++.+..+++|+.+++
T Consensus        38 ~~l-~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~-~~~i~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          38 ADL-DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDL  114 (227)
T ss_dssp             HHH-HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEEC
T ss_pred             HHc-CCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc-cccccccccccccccc-cccccccccccccccccc
Confidence            345 4788888888888888654478888888888888877643 7888888888888874 456677788888888888


Q ss_pred             eCCCCchhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccc-cccCCCcCEEeccCCCCcccccc
Q 036772          122 VGCASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRF-LEISCNIENLDLSETAIEELPSS  200 (583)
Q Consensus       122 ~~~~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~-~~~~~~L~~L~L~~~~i~~lp~~  200 (583)
                      ++|.....  ..+...+.++.+.++++. +...+....+++|++|++++|...... ...+++|+.|++++|.++.++. 
T Consensus       115 ~~~~~~~~--~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~-  190 (227)
T d1h6ua2         115 TSTQITDV--TPLAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-  190 (227)
T ss_dssp             TTSCCCCC--GGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-
T ss_pred             cccccccc--chhccccchhhhhchhhh-hchhhhhccccccccccccccccccchhhcccccceecccCCCccCCChh-
Confidence            87764432  335667788888887643 333333236788888888886533211 2445788889999999888875 


Q ss_pred             ccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccC
Q 036772          201 IGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSG  238 (583)
Q Consensus       201 i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~  238 (583)
                      ++.+++|++|++++|+ ++.++. +.++++|+.|++++
T Consensus       191 l~~l~~L~~L~Ls~N~-lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         191 LASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             GGGCTTCCEEECTTSC-CCBCGG-GTTCTTCCEEEEEE
T ss_pred             hcCCCCCCEEECcCCc-CCCCcc-cccCCCCCEEEeeC
Confidence            8889999999999985 455553 77888888888863

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.55  E-value=4.1e-14  Score=131.10  Aligned_cols=158  Identities=22%  Similarity=0.310  Sum_probs=67.5

Q ss_pred             CCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEcc
Q 036772           67 PEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLG  146 (583)
Q Consensus        67 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~  146 (583)
                      ++++++|+++++.++.+ +++..+++|++|++++|+ ++.++.++.+++|++|++++|... .++ .++++++|+.|+++
T Consensus        39 l~~l~~L~l~~~~i~~l-~~l~~l~nL~~L~Ls~N~-l~~~~~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQ-LTDITPLKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             HTTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECC
T ss_pred             hcCCCEEECCCCCCCCc-cccccCCCcCcCcccccc-ccCcccccCCcccccccccccccc-ccc-cccccccccccccc
Confidence            33444444444444443 234445555555555553 233333455555555555554322 222 24455555555555


Q ss_pred             CCCCCCcCCCcCCCCCccEEEecCCCCccccc--ccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCcccccc
Q 036772          147 RCISLKSLPTGINLDSLKVLYLGGCSNLKRFL--EISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNS  224 (583)
Q Consensus       147 ~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~--~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~  224 (583)
                      +|.. ..++....+++|+.|++++|. +..++  ....+++.|++.+|.++.+++ ++.+++|++|++++|+ ++.++ .
T Consensus       115 ~~~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~-i~~i~-~  189 (199)
T d2omxa2         115 NNQI-TDIDPLKNLTNLNRLELSSNT-ISDISALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNK-VSDIS-V  189 (199)
T ss_dssp             SSCC-CCCGGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-G
T ss_pred             cccc-ccccccchhhhhHHhhhhhhh-hcccccccccccccccccccccccCCcc-ccCCCCCCEEECCCCC-CCCCc-c
Confidence            4322 222211144445444444432 11111  112233333344444444443 5555555555555553 22332 2


Q ss_pred             ccCCCCCcE
Q 036772          225 LCNLKSLQY  233 (583)
Q Consensus       225 l~~l~~L~~  233 (583)
                      ++++++|++
T Consensus       190 l~~L~~L~~  198 (199)
T d2omxa2         190 LAKLTNLES  198 (199)
T ss_dssp             GGGCTTCSE
T ss_pred             ccCCCCCCc
Confidence            444444444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.54  E-value=3.4e-14  Score=132.82  Aligned_cols=163  Identities=21%  Similarity=0.268  Sum_probs=85.6

Q ss_pred             CccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCC
Q 036772           47 ELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCAS  126 (583)
Q Consensus        47 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~  126 (583)
                      +|++|+++++.++.++..-.+++|++|++++|+++.++ .+..+++|++|++++|+ ++.++.+..+++|+.|++++|..
T Consensus        47 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~~~~  124 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNGI  124 (210)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSCC
T ss_pred             CccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCcc-ccccCcccccccccccc-ccccccccccccccccccccccc
Confidence            45555555555555443224445555555555554443 23445555555555543 23344444444555555544432


Q ss_pred             chhhhhhccCCCCCCEEEccCCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCC
Q 036772          127 LIEIHSSIQHLNKLVFLNLGRCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSR  206 (583)
Q Consensus       127 l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~  206 (583)
                      . .+ ..+..+++|+.++++++ .+...+.                     ...+.+|+.+++++|.++.+++ ++++++
T Consensus       125 ~-~~-~~l~~l~~l~~l~~~~n-~l~~~~~---------------------~~~l~~L~~l~l~~n~l~~i~~-l~~l~~  179 (210)
T d1h6ta2         125 S-DI-NGLVHLPQLESLYLGNN-KITDITV---------------------LSRLTKLDTLSLEDNQISDIVP-LAGLTK  179 (210)
T ss_dssp             C-CC-GGGGGCTTCCEEECCSS-CCCCCGG---------------------GGGCTTCSEEECCSSCCCCCGG-GTTCTT
T ss_pred             c-cc-ccccccccccccccccc-ccccccc---------------------cccccccccccccccccccccc-ccCCCC
Confidence            1 11 22344444444444442 2222221                     1223456666666677776664 778888


Q ss_pred             ccEEeeeCCCCCccccccccCCCCCcEEEccC
Q 036772          207 LVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSG  238 (583)
Q Consensus       207 L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~  238 (583)
                      |+.|++++|.. +.++ .+.++++|++|++++
T Consensus       180 L~~L~Ls~N~i-~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         180 LQNLYLSKNHI-SDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCEEECCSSCC-CBCG-GGTTCTTCSEEEEEE
T ss_pred             CCEEECCCCCC-CCCh-hhcCCCCCCEEEccC
Confidence            88888888754 4555 577888888888764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.52  E-value=9e-14  Score=129.92  Aligned_cols=165  Identities=24%  Similarity=0.316  Sum_probs=104.3

Q ss_pred             CCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEcc
Q 036772           67 PEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLG  146 (583)
Q Consensus        67 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~  146 (583)
                      +.+|++|+++++.++.+. ++..+++|++|+|++|+ ++.++.++.+++|++|++++|. +..++ .+..+++|+.|+++
T Consensus        45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~-i~~l~~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEECT
T ss_pred             hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCcc-ccCccccccCcccccccccccc-ccccc-cccccccccccccc
Confidence            455666666666666553 35566666666666663 3334445555666666666553 22333 35555555555555


Q ss_pred             CCCCCCcCCCcCCCCCccEEEecCCCCcccccccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCcccccccc
Q 036772          147 RCISLKSLPTGINLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLC  226 (583)
Q Consensus       147 ~c~~l~~lp~~~~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~  226 (583)
                      +|. +..++..                     ....+++.++++++.++..+ .+..+++|+.+++++|... .++ .+.
T Consensus       121 ~~~-~~~~~~l---------------------~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~-~i~-~l~  175 (210)
T d1h6ta2         121 HNG-ISDINGL---------------------VHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQIS-DIV-PLA  175 (210)
T ss_dssp             TSC-CCCCGGG---------------------GGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC-CCG-GGT
T ss_pred             ccc-ccccccc---------------------cccccccccccccccccccc-ccccccccccccccccccc-ccc-ccc
Confidence            532 2222211                     22345556666667777655 3778999999999998764 444 388


Q ss_pred             CCCCCcEEEccCCCCCCccccccCCCCcccEEEccC
Q 036772          227 NLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANE  262 (583)
Q Consensus       227 ~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  262 (583)
                      ++++|++|++++|. ++.+| .+..+++|+.|++++
T Consensus       176 ~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         176 GLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             TCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEEEEE
T ss_pred             CCCCCCEEECCCCC-CCCCh-hhcCCCCCCEEEccC
Confidence            99999999999985 56666 588999999998864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.7e-15  Score=143.32  Aligned_cols=199  Identities=24%  Similarity=0.347  Sum_probs=109.8

Q ss_pred             CccEEEecCCCCCC-CCCCCCCCCceEEEccCCChh--hhcccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeee
Q 036772           47 ELRYFQWDGYPLKS-LPSKNIPEHLVSLEMPHSNIE--QLWNGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLV  122 (583)
Q Consensus        47 ~Lr~L~l~~~~l~~-lp~~~~~~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~  122 (583)
                      .+..+.+....... +...+.+.+|++|+++++.+.  .+..-+.++++|++|+|++|......+ .+..+++|++|+++
T Consensus        24 ~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          24 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             cceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            45566665444332 222345667888888887765  244446778888888888875432222 35667778888887


Q ss_pred             CCCCchh--hhhhccCCCCCCEEEccCCCCCCcC--CCcC--CCCCccEEEecCCCC-cccccccCCCcCEEeccCCCCc
Q 036772          123 GCASLIE--IHSSIQHLNKLVFLNLGRCISLKSL--PTGI--NLDSLKVLYLGGCSN-LKRFLEISCNIENLDLSETAIE  195 (583)
Q Consensus       123 ~~~~l~~--~~~~i~~l~~L~~L~L~~c~~l~~l--p~~~--~l~~L~~L~L~~c~~-l~~~~~~~~~L~~L~L~~~~i~  195 (583)
                      +|..++.  +..-...+++|++|++++|..+++.  ...+  ..++|+.|++++|.. +..                  .
T Consensus       104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~------------------~  165 (284)
T d2astb2         104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK------------------S  165 (284)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH------------------H
T ss_pred             ccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccc------------------c
Confidence            7766543  2223356777777777777665432  1112  346677777766531 110                  0


Q ss_pred             cccccccCCCCccEEeeeCCCCCc-cccccccCCCCCcEEEccCCCCCC-ccccccCCCCcccEEEccCC
Q 036772          196 ELPSSIGNLSRLVRLDLTNCSRLK-SVSNSLCNLKSLQYLFLSGCLKLE-KLPEEIGNLESLKIMLANET  263 (583)
Q Consensus       196 ~lp~~i~~l~~L~~L~L~~~~~l~-~lp~~l~~l~~L~~L~l~~c~~l~-~lp~~l~~l~~L~~L~l~~~  263 (583)
                      .+.....++++|++|++++|...+ .....+.++++|++|++++|..+. .....++++++|+.|+++++
T Consensus       166 ~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         166 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            122223345566666666655433 234455556666666666665442 22333445555555554443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1e-14  Score=143.24  Aligned_cols=191  Identities=22%  Similarity=0.230  Sum_probs=133.1

Q ss_pred             CCccEEEecCCCCCC--CCCCC-CCCCceEEEccCCChh-hhcccccCCCCccEEeccCCCCCCCCC--C-CCCCCCcCE
Q 036772           46 NELRYFQWDGYPLKS--LPSKN-IPEHLVSLEMPHSNIE-QLWNGVQNLAALKRLNLSYCKQLSRIP--D-LSLALNLEW  118 (583)
Q Consensus        46 ~~Lr~L~l~~~~l~~--lp~~~-~~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~Ls~~~~l~~~p--~-l~~l~~L~~  118 (583)
                      .+|++|+++++.+..  ++..+ .+++|++|+++++.+. .....+..+++|++|++++|..+++..  . ...+++|++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~  125 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  125 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccc
Confidence            589999999887642  33333 6789999999999876 344567889999999999987665422  2 356899999


Q ss_pred             EeeeCCCCchh--hhhhcc-CCCCCCEEEccCCC-CCCc--CCCcC-CCCCccEEEecCCCCcccccccCCCcCEEeccC
Q 036772          119 LDLVGCASLIE--IHSSIQ-HLNKLVFLNLGRCI-SLKS--LPTGI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSE  191 (583)
Q Consensus       119 L~L~~~~~l~~--~~~~i~-~l~~L~~L~L~~c~-~l~~--lp~~~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~  191 (583)
                      |++++|..+..  +...+. ..++|+.|++++|. .+++  +.... ++++|++|++++|..+..               
T Consensus       126 L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd---------------  190 (284)
T d2astb2         126 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN---------------  190 (284)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG---------------
T ss_pred             cccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCc---------------
Confidence            99999976643  333343 45789999999873 3332  22212 578888888888765532               


Q ss_pred             CCCccccccccCCCCccEEeeeCCCCCcc-ccccccCCCCCcEEEccCCCCCCccccccCCCCcc
Q 036772          192 TAIEELPSSIGNLSRLVRLDLTNCSRLKS-VSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESL  255 (583)
Q Consensus       192 ~~i~~lp~~i~~l~~L~~L~L~~~~~l~~-lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L  255 (583)
                          ..+..+..+++|++|++++|..+.. ....++++++|+.|++++|.....++.....+++|
T Consensus       191 ----~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L  251 (284)
T d2astb2         191 ----DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL  251 (284)
T ss_dssp             ----GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS
T ss_pred             ----hhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccc
Confidence                2233466788999999999876543 44567888999999999984333333333334443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.47  E-value=4.9e-13  Score=123.70  Aligned_cols=161  Identities=19%  Similarity=0.254  Sum_probs=99.7

Q ss_pred             eEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCCC
Q 036772           71 VSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCIS  150 (583)
Q Consensus        71 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~~  150 (583)
                      +.+.+..+.+..... ...+.+|+.|++++|. +++++++..+++|++|++++|.. ..+++ ++++++|+.|++++| .
T Consensus        21 i~~~l~~~~~~~~~~-~~~l~~l~~L~l~~~~-i~~l~~l~~l~nL~~L~Ls~N~l-~~~~~-l~~l~~L~~L~l~~n-~   95 (199)
T d2omxa2          21 MKTVLGKTNVTDTVS-QTDLDQVTTLQADRLG-IKSIDGVEYLNNLTQINFSNNQL-TDITP-LKNLTKLVDILMNNN-Q   95 (199)
T ss_dssp             HHHHTTCSSTTSEEC-HHHHTTCCEEECTTSC-CCCCTTGGGCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSS-C
T ss_pred             HHHHhCCCCCCCccC-HHHhcCCCEEECCCCC-CCCccccccCCCcCcCccccccc-cCccc-ccCCccccccccccc-c
Confidence            334455555554322 2467899999999985 55677788899999999999864 44443 889999999999885 4


Q ss_pred             CCcCCCcCCCCCccEEEecCCCCcccc-cccCCCcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCC
Q 036772          151 LKSLPTGINLDSLKVLYLGGCSNLKRF-LEISCNIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLK  229 (583)
Q Consensus       151 l~~lp~~~~l~~L~~L~L~~c~~l~~~-~~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~  229 (583)
                      +..++...++++|+.|++++|...... ...+++|+.|++++|.+..++. +..+++|+.|++.+|... .++ .+++++
T Consensus        96 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~~~~L~~L~l~~n~l~-~l~-~l~~l~  172 (199)
T d2omxa2          96 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLNFSSNQVT-DLK-PLANLT  172 (199)
T ss_dssp             CCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCC-CCG-GGTTCT
T ss_pred             cccccccccccccccccccccccccccccchhhhhHHhhhhhhhhccccc-cccccccccccccccccc-CCc-cccCCC
Confidence            555654337888888888876543321 1223455555555555554442 455555555555554332 222 244455


Q ss_pred             CCcEEEccCC
Q 036772          230 SLQYLFLSGC  239 (583)
Q Consensus       230 ~L~~L~l~~c  239 (583)
                      +|++|++++|
T Consensus       173 ~L~~L~ls~N  182 (199)
T d2omxa2         173 TLERLDISSN  182 (199)
T ss_dssp             TCCEEECCSS
T ss_pred             CCCEEECCCC
Confidence            5555555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=9.7e-12  Score=118.22  Aligned_cols=62  Identities=24%  Similarity=0.344  Sum_probs=45.8

Q ss_pred             ccEEEeccCCCcccCccCCCCCCCCEE-EccCCCCcccChh-hhccCcccccccccccccccCCC
Q 036772          269 LVDMSLVDCGITELPESLGRSPSLKFL-NLAENDFEKIPSS-IKQLSNLLFLTLQNCKRLQSLPE  331 (583)
Q Consensus       269 L~~L~L~~~~l~~lp~~l~~l~~L~~L-~Ls~n~l~~lp~~-i~~l~~L~~L~L~~c~~L~~lp~  331 (583)
                      ++.|+++++++++++..+...++++.+ .+++|.++.+|.. +..+++|+.|++++++ ++++|.
T Consensus       155 l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~  218 (242)
T d1xwdc1         155 SVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS  218 (242)
T ss_dssp             CEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCS
T ss_pred             ceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCH
Confidence            445555556666677666667777666 4677889999865 6889999999999984 777763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.8e-13  Score=142.44  Aligned_cols=302  Identities=18%  Similarity=0.226  Sum_probs=144.4

Q ss_pred             CcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCC-----CCCCC-CCCCceEEEccCCChhh-----hcc
Q 036772           17 RLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKS-----LPSKN-IPEHLVSLEMPHSNIEQ-----LWN   85 (583)
Q Consensus        17 ~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~-----lp~~~-~~~~L~~L~L~~~~l~~-----l~~   85 (583)
                      +|+.|+++++.+    ....+.+-+..+ +++|.|++++|.++.     ++..+ ..++|++|+|++|.+..     +..
T Consensus         3 ~l~~ld~~~~~i----~~~~~~~l~~~l-~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~   77 (460)
T d1z7xw1           3 DIQSLDIQCEEL----SDARWAELLPLL-QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEEESCCC----CHHHHHHHHHHH-TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCCEEEeeCCcC----ChHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHH
Confidence            467777776653    222223333344 467777777776542     11112 45667777777776642     223


Q ss_pred             ccc-CCCCccEEeccCCCCCCC----CC-CCCCCCCcCEEeeeCCCCchh----hhhhc---------------------
Q 036772           86 GVQ-NLAALKRLNLSYCKQLSR----IP-DLSLALNLEWLDLVGCASLIE----IHSSI---------------------  134 (583)
Q Consensus        86 ~~~-~l~~L~~L~Ls~~~~l~~----~p-~l~~l~~L~~L~L~~~~~l~~----~~~~i---------------------  134 (583)
                      .+. ...+|++|+|++|.....    ++ .+..+++|++|++++|.....    +...+                     
T Consensus        78 ~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  157 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS  157 (460)
T ss_dssp             TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             HHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhh
Confidence            332 234677777777753322    11 255667777777777653221    11111                     


Q ss_pred             --------cCCCCCCEEEccCCCCCCc----CCCcC--CCCCccEEEecCCCCccc-------ccccCCCcCEEeccCCC
Q 036772          135 --------QHLNKLVFLNLGRCISLKS----LPTGI--NLDSLKVLYLGGCSNLKR-------FLEISCNIENLDLSETA  193 (583)
Q Consensus       135 --------~~l~~L~~L~L~~c~~l~~----lp~~~--~l~~L~~L~L~~c~~l~~-------~~~~~~~L~~L~L~~~~  193 (583)
                              .....++.++++++.....    ....+  .......+++.+|.....       .......++.+.+..+.
T Consensus       158 ~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~  237 (460)
T d1z7xw1         158 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK  237 (460)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             hcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcc
Confidence                    1223333333333211100    00000  112233344433322110       01122345555555554


Q ss_pred             Ccc------ccccccCCCCccEEeeeCCCCCcc----ccccccCCCCCcEEEccCCCCCCc----ccccc-CCCCcccEE
Q 036772          194 IEE------LPSSIGNLSRLVRLDLTNCSRLKS----VSNSLCNLKSLQYLFLSGCLKLEK----LPEEI-GNLESLKIM  258 (583)
Q Consensus       194 i~~------lp~~i~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~l~~c~~l~~----lp~~l-~~l~~L~~L  258 (583)
                      +..      ++........++.+++++|.....    ....+...+.++.+++++|.....    +...+ .....|+.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l  317 (460)
T d1z7xw1         238 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL  317 (460)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             ccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccc
Confidence            431      122233445666666666544322    122334455666666666543211    11111 123456666


Q ss_pred             EccCCccccC--------------ccEEEeccCCCcc-----cCccCC-CCCCCCEEEccCCCCcc-----cChhhhccC
Q 036772          259 LANETAISQN--------------LVDMSLVDCGITE-----LPESLG-RSPSLKFLNLAENDFEK-----IPSSIKQLS  313 (583)
Q Consensus       259 ~l~~~~i~~~--------------L~~L~L~~~~l~~-----lp~~l~-~l~~L~~L~Ls~n~l~~-----lp~~i~~l~  313 (583)
                      .++++.+...              |++|+|++|.+.+     ++..+. ..+.|++|+|++|.++.     ++..+..++
T Consensus       318 ~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~  397 (460)
T d1z7xw1         318 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH  397 (460)
T ss_dssp             ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred             cccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCC
Confidence            6666554432              6677777776653     333333 35667778887777752     444566667


Q ss_pred             cccccccccc
Q 036772          314 NLLFLTLQNC  323 (583)
Q Consensus       314 ~L~~L~L~~c  323 (583)
                      +|++|+|++|
T Consensus       398 ~L~~L~Ls~N  407 (460)
T d1z7xw1         398 SLRELDLSNN  407 (460)
T ss_dssp             CCCEEECCSS
T ss_pred             CCCEEECCCC
Confidence            7777777776

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.7e-14  Score=146.88  Aligned_cols=308  Identities=16%  Similarity=0.118  Sum_probs=200.9

Q ss_pred             CCCCcceEEEecCCCCCCccceecCCcccccCCCccEEEecCCCCCC-----CCCCC--CCCCceEEEccCCChhh----
Q 036772           14 RMRRLRFFKFYNSFPEMNKCKVRHSRCLESFFNELRYFQWDGYPLKS-----LPSKN--IPEHLVSLEMPHSNIEQ----   82 (583)
Q Consensus        14 ~m~~Lr~L~l~~~~~~~~~~~~~l~~~l~~l~~~Lr~L~l~~~~l~~-----lp~~~--~~~~L~~L~L~~~~l~~----   82 (583)
                      .|++||.|++++|.+ .......+...+... ++|++|++++|+++.     +...+  ...+|++|++++|.++.    
T Consensus        25 ~l~~l~~L~L~~~~i-~~~~~~~l~~~L~~~-~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~  102 (460)
T d1z7xw1          25 LLQQCQVVRLDDCGL-TEARCKDISSALRVN-PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  102 (460)
T ss_dssp             HHTTCSEEEEESSCC-CHHHHHHHHHHHHTC-TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             hCCCCCEEEeCCCCC-CHHHHHHHHHHHhcC-CCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccc
Confidence            789999999999864 111223455666777 489999999998742     22222  34579999999999864    


Q ss_pred             -hcccccCCCCccEEeccCCCCCCC----------------------CCC------------CCCCCCcCEEeeeCCCCc
Q 036772           83 -LWNGVQNLAALKRLNLSYCKQLSR----------------------IPD------------LSLALNLEWLDLVGCASL  127 (583)
Q Consensus        83 -l~~~~~~l~~L~~L~Ls~~~~l~~----------------------~p~------------l~~l~~L~~L~L~~~~~l  127 (583)
                       +...+..+++|++|+|++|.....                      .+.            +.....++.++++++...
T Consensus       103 ~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~  182 (460)
T d1z7xw1         103 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  182 (460)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             cccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccccccccc
Confidence             456688999999999999863210                      000            122356788888876544


Q ss_pred             hh----hhhhc-cCCCCCCEEEccCCCCCCcC----CCcC-CCCCccEEEecCCCCcc--------cccccCCCcCEEec
Q 036772          128 IE----IHSSI-QHLNKLVFLNLGRCISLKSL----PTGI-NLDSLKVLYLGGCSNLK--------RFLEISCNIENLDL  189 (583)
Q Consensus       128 ~~----~~~~i-~~l~~L~~L~L~~c~~l~~l----p~~~-~l~~L~~L~L~~c~~l~--------~~~~~~~~L~~L~L  189 (583)
                      ..    ....+ ........+++.++.....-    .... ..+.++.+++.++....        ........++.+++
T Consensus       183 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l  262 (460)
T d1z7xw1         183 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI  262 (460)
T ss_dssp             HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             cccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccc
Confidence            32    11122 23346677888775332211    1111 46788889888865322        22334467888999


Q ss_pred             cCCCCccc-----cccccCCCCccEEeeeCCCCCcc----ccccc-cCCCCCcEEEccCCCCCCcc----ccccCCCCcc
Q 036772          190 SETAIEEL-----PSSIGNLSRLVRLDLTNCSRLKS----VSNSL-CNLKSLQYLFLSGCLKLEKL----PEEIGNLESL  255 (583)
Q Consensus       190 ~~~~i~~l-----p~~i~~l~~L~~L~L~~~~~l~~----lp~~l-~~l~~L~~L~l~~c~~l~~l----p~~l~~l~~L  255 (583)
                      +++.+...     ...+...+.++.+++++|.....    +...+ .....|+.+++++|......    ...+...++|
T Consensus       263 ~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L  342 (460)
T d1z7xw1         263 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL  342 (460)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccch
Confidence            98887642     23456678889999988765322    11222 23457899999988654332    2233455689


Q ss_pred             cEEEccCCcccc---------------CccEEEeccCCCcc-----cCccCCCCCCCCEEEccCCCCcc-----cChhhh
Q 036772          256 KIMLANETAISQ---------------NLVDMSLVDCGITE-----LPESLGRSPSLKFLNLAENDFEK-----IPSSIK  310 (583)
Q Consensus       256 ~~L~l~~~~i~~---------------~L~~L~L~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~-----lp~~i~  310 (583)
                      ++|++++|.+.+               .|++|++++|.+++     +...+..+++|++|+|++|.++.     +...+.
T Consensus       343 ~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~  422 (460)
T d1z7xw1         343 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR  422 (460)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHT
T ss_pred             hhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHH
Confidence            999999988742               28999999999876     45566778999999999999873     222332


Q ss_pred             -ccCcccccccccc
Q 036772          311 -QLSNLLFLTLQNC  323 (583)
Q Consensus       311 -~l~~L~~L~L~~c  323 (583)
                       ....|+.|++.++
T Consensus       423 ~~~~~L~~l~l~~~  436 (460)
T d1z7xw1         423 QPGCLLEQLVLYDI  436 (460)
T ss_dssp             STTCCCCEEECTTC
T ss_pred             hCCCccCEEECCCC
Confidence             2336788888765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=4.2e-12  Score=107.66  Aligned_cols=98  Identities=19%  Similarity=0.154  Sum_probs=64.0

Q ss_pred             cEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCCCcCEEeeeCCCCch
Q 036772           49 RYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLALNLEWLDLVGCASLI  128 (583)
Q Consensus        49 r~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~~~~l~  128 (583)
                      |+|++++|.++.++....+++|++|++++|.++.+|..+..+++|++|++++|. ++.+|++..+++|++|++++|....
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~~~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSCCCS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhccccccccccc-ccccCccccccccCeEECCCCccCC
Confidence            566777777776665446667777777777777776667777777777777764 3445666677777777777765332


Q ss_pred             h-hhhhccCCCCCCEEEccC
Q 036772          129 E-IHSSIQHLNKLVFLNLGR  147 (583)
Q Consensus       129 ~-~~~~i~~l~~L~~L~L~~  147 (583)
                      . ....++.+++|+.|++++
T Consensus        80 ~~~~~~l~~~~~L~~L~l~~   99 (124)
T d1dcea3          80 SAAIQPLVSCPRLVLLNLQG   99 (124)
T ss_dssp             SSTTGGGGGCTTCCEEECTT
T ss_pred             CCCchhhcCCCCCCEEECCC
Confidence            1 123456677777777766

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.27  E-value=1.4e-11  Score=113.04  Aligned_cols=164  Identities=20%  Similarity=0.137  Sum_probs=113.7

Q ss_pred             ccEEEecCCCCCCCCCCCCCCCceEEEccCCChhh-hc-ccccCCCCccEEeccCCCCCCCCC-CCCCCCCcCEEeeeCC
Q 036772           48 LRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQ-LW-NGVQNLAALKRLNLSYCKQLSRIP-DLSLALNLEWLDLVGC  124 (583)
Q Consensus        48 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~-l~-~~~~~l~~L~~L~Ls~~~~l~~~p-~l~~l~~L~~L~L~~~  124 (583)
                      .+.++.++++++++|..+ ++++++|+|++|.++. ++ ..+.++++|+.|+|++|......+ .+..+++|++|+|++|
T Consensus        10 ~~~v~Cs~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CCEEEEeCCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            457888888899998765 4789999999999975 43 347889999999999987766655 4788899999999998


Q ss_pred             CCchhhhhhccCCCCCCEEEccCCCCCCcCCCcC--CCCCccEEEecCCCCcccc--cccCCCcCEEeccCCCCc-cccc
Q 036772          125 ASLIEIHSSIQHLNKLVFLNLGRCISLKSLPTGI--NLDSLKVLYLGGCSNLKRF--LEISCNIENLDLSETAIE-ELPS  199 (583)
Q Consensus       125 ~~l~~~~~~i~~l~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~L~~c~~l~~~--~~~~~~L~~L~L~~~~i~-~lp~  199 (583)
                      ......+..|.++++|++|+|++ +.++.+|...  .+++|++|+|+++......  ......++.+.+..+.++ ..|.
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~  167 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS  167 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred             cccccCHHHHhCCCcccccccCC-ccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCCh
Confidence            65544456788999999999988 5677776654  7899999999886532111  111112333444445444 2343


Q ss_pred             cccCCCCccEEeeeCCC
Q 036772          200 SIGNLSRLVRLDLTNCS  216 (583)
Q Consensus       200 ~i~~l~~L~~L~L~~~~  216 (583)
                         .+.+++.++++.+.
T Consensus       168 ---~l~~~~l~~L~~n~  181 (192)
T d1w8aa_         168 ---KVRDVQIKDLPHSE  181 (192)
T ss_dssp             ---TTTTSBGGGSCTTT
T ss_pred             ---hhcCCEeeecCHhh
Confidence               34555555665543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=9e-12  Score=110.88  Aligned_cols=123  Identities=16%  Similarity=0.182  Sum_probs=74.7

Q ss_pred             CcCEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccC
Q 036772          183 NIENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANE  262 (583)
Q Consensus       183 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~  262 (583)
                      ++++|+|++|.|+.++.....+++|+.|++++|... .++ .+..+++|++|++++|......+..+..+++|+.|++++
T Consensus        19 ~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~   96 (162)
T d1a9na_          19 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   96 (162)
T ss_dssp             SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             cCcEEECCCCCCCccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceecc
Confidence            455566666666666655566677777777776543 342 356667777777777653332222334556655555555


Q ss_pred             CccccCccEEEeccCCCcccC--ccCCCCCCCCEEEccCCCCcccCh----hhhccCcccccccc
Q 036772          263 TAISQNLVDMSLVDCGITELP--ESLGRSPSLKFLNLAENDFEKIPS----SIKQLSNLLFLTLQ  321 (583)
Q Consensus       263 ~~i~~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp~----~i~~l~~L~~L~L~  321 (583)
                      |.+..              ++  ..+..+++|++|++++|.++..|.    .+..+++|+.|+-.
T Consensus        97 N~i~~--------------~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          97 NSLVE--------------LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CCCCC--------------GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ccccc--------------cccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            54432              33  246677888888888888877764    35667777776643

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.21  E-value=3.1e-11  Score=110.57  Aligned_cols=97  Identities=20%  Similarity=0.155  Sum_probs=41.3

Q ss_pred             EEEecCCCCcccccccC-CCcCEEeccCCCCcc-cc-ccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCC
Q 036772          165 VLYLGGCSNLKRFLEIS-CNIENLDLSETAIEE-LP-SSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLK  241 (583)
Q Consensus       165 ~L~L~~c~~l~~~~~~~-~~L~~L~L~~~~i~~-lp-~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~  241 (583)
                      +++.++ ..+..+|..+ .++++|+|++|.|+. ++ ..++.+++|+.|++++|......+..+..+++|++|++++|..
T Consensus        12 ~v~Cs~-~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l   90 (192)
T d1w8aa_          12 TVDCTG-RGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             EEECTT-SCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             EEEEeC-CCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccc
Confidence            344433 2334444322 345555555555543 21 2234445555555554444444444444444555555544433


Q ss_pred             CCccccccCCCCcccEEEccC
Q 036772          242 LEKLPEEIGNLESLKIMLANE  262 (583)
Q Consensus       242 l~~lp~~l~~l~~L~~L~l~~  262 (583)
                      ....|..+.++++|+.|++++
T Consensus        91 ~~l~~~~F~~l~~L~~L~L~~  111 (192)
T d1w8aa_          91 KEISNKMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCS
T ss_pred             cccCHHHHhCCCcccccccCC
Confidence            322233344444444333333

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=6.2e-12  Score=111.93  Aligned_cols=78  Identities=17%  Similarity=0.184  Sum_probs=40.7

Q ss_pred             CccEEEecCCCCCCCCCCC-CCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCC-CCCCCCcCEEeeeCC
Q 036772           47 ELRYFQWDGYPLKSLPSKN-IPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPD-LSLALNLEWLDLVGC  124 (583)
Q Consensus        47 ~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~~  124 (583)
                      +||.|++++|.++.+|..+ .+++|+.|++++|.++.+ +++..+++|++|++++|+.....+. +..+++|++|++++|
T Consensus        19 ~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N   97 (162)
T d1a9na_          19 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN   97 (162)
T ss_dssp             SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC
T ss_pred             cCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCccccccccccccceeccc
Confidence            5666666666666665443 455566666666655555 3355555555555555543322222 234455555555554


Q ss_pred             C
Q 036772          125 A  125 (583)
Q Consensus       125 ~  125 (583)
                      .
T Consensus        98 ~   98 (162)
T d1a9na_          98 S   98 (162)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.13  E-value=4.5e-12  Score=127.41  Aligned_cols=83  Identities=13%  Similarity=-0.009  Sum_probs=44.0

Q ss_pred             CCCCceEEEccCCChh-----hhcccccCCCCccEEeccCCCCCCCCC-----------CCCCCCCcCEEeeeCCCCch-
Q 036772           66 IPEHLVSLEMPHSNIE-----QLWNGVQNLAALKRLNLSYCKQLSRIP-----------DLSLALNLEWLDLVGCASLI-  128 (583)
Q Consensus        66 ~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~Ls~~~~l~~~p-----------~l~~l~~L~~L~L~~~~~l~-  128 (583)
                      ....|++|+|++|.+.     .+-..+...++|+.|+++++.......           .+...++|++|+|++|.... 
T Consensus        29 ~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  108 (344)
T d2ca6a1          29 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT  108 (344)
T ss_dssp             HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred             hCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccc
Confidence            3566777777777653     344456677777777777653322110           12344555566665554322 


Q ss_pred             ---hhhhhccCCCCCCEEEccCC
Q 036772          129 ---EIHSSIQHLNKLVFLNLGRC  148 (583)
Q Consensus       129 ---~~~~~i~~l~~L~~L~L~~c  148 (583)
                         .+...+...++|+.|++++|
T Consensus       109 ~~~~l~~~l~~~~~L~~L~l~~n  131 (344)
T d2ca6a1         109 AQEPLIDFLSKHTPLEHLYLHNN  131 (344)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSS
T ss_pred             cccchhhhhcccccchheecccc
Confidence               13333444555555555553

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=1.1e-10  Score=98.58  Aligned_cols=104  Identities=25%  Similarity=0.335  Sum_probs=74.9

Q ss_pred             CEEeccCCCCccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCc
Q 036772          185 ENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETA  264 (583)
Q Consensus       185 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~  264 (583)
                      |.|++++|.++.++. ++.+++|++|++++|.. +.+|..++.+++|++|++++|. +..+| .++.+++|+.|++++|.
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~~N~-i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCcc-Ccchhhhhhhhccccccccccc-ccccC-ccccccccCeEECCCCc
Confidence            467888888888875 78888899999988764 5677778888888888888864 44454 36677776666666655


Q ss_pred             cccCccEEEeccCCCcccC--ccCCCCCCCCEEEccCCCCcccC
Q 036772          265 ISQNLVDMSLVDCGITELP--ESLGRSPSLKFLNLAENDFEKIP  306 (583)
Q Consensus       265 i~~~L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp  306 (583)
                      +..              ++  ..+..+++|+.|++++|.++..+
T Consensus        77 i~~--------------~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          77 LQQ--------------SAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CCS--------------SSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             cCC--------------CCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            443              43  35677788888888888776543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.01  E-value=2.6e-10  Score=114.18  Aligned_cols=237  Identities=18%  Similarity=0.152  Sum_probs=125.9

Q ss_pred             ecCCcccccCCCccEEEecCCCCCC-----CCCCC-CCCCceEEEccCCChhh-----------hcccccCCCCccEEec
Q 036772           36 RHSRCLESFFNELRYFQWDGYPLKS-----LPSKN-IPEHLVSLEMPHSNIEQ-----------LWNGVQNLAALKRLNL   98 (583)
Q Consensus        36 ~l~~~l~~l~~~Lr~L~l~~~~l~~-----lp~~~-~~~~L~~L~L~~~~l~~-----------l~~~~~~l~~L~~L~L   98 (583)
                      .+...+... ..|+.|++++|.+..     +...+ ..++|+.|+++++....           +...+...++|+.|+|
T Consensus        22 ~l~~~L~~~-~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L  100 (344)
T d2ca6a1          22 SVFAVLLED-DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  100 (344)
T ss_dssp             TTSHHHHHC-SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHhhC-CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccc
Confidence            344455555 578888888886532     22222 56788888888664331           2233567788888888


Q ss_pred             cCCCCCCCCC-----CCCCCCCcCEEeeeCCCCchhhhh-------------hccCCCCCCEEEccCCCCCCc-----CC
Q 036772           99 SYCKQLSRIP-----DLSLALNLEWLDLVGCASLIEIHS-------------SIQHLNKLVFLNLGRCISLKS-----LP  155 (583)
Q Consensus        99 s~~~~l~~~p-----~l~~l~~L~~L~L~~~~~l~~~~~-------------~i~~l~~L~~L~L~~c~~l~~-----lp  155 (583)
                      ++|.......     .+...++|++|++++|........             .....+.|+.|+++++ .++.     +.
T Consensus       101 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n-~i~~~~~~~l~  179 (344)
T d2ca6a1         101 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWA  179 (344)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHH
T ss_pred             cccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc-ccccccccccc
Confidence            8886544311     234567888888888764322111             1134556666666553 2221     11


Q ss_pred             CcC-CCCCccEEEecCCCCcccccccCCCcCEEeccCCCCcc------ccccccCCCCccEEeeeCCCCCcc----cccc
Q 036772          156 TGI-NLDSLKVLYLGGCSNLKRFLEISCNIENLDLSETAIEE------LPSSIGNLSRLVRLDLTNCSRLKS----VSNS  224 (583)
Q Consensus       156 ~~~-~l~~L~~L~L~~c~~l~~~~~~~~~L~~L~L~~~~i~~------lp~~i~~l~~L~~L~L~~~~~l~~----lp~~  224 (583)
                      ..+ ..+.|++|+++                     +|.+..      +...+..+++|+.|++++|.....    +...
T Consensus       180 ~~l~~~~~L~~L~L~---------------------~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~  238 (344)
T d2ca6a1         180 KTFQSHRLLHTVKMV---------------------QNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  238 (344)
T ss_dssp             HHHHHCTTCCEEECC---------------------SSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             chhhhhhhhcccccc---------------------cccccccccccchhhhhcchhhhccccccccccccccccccccc
Confidence            111 23344444444                     444331      222345556666666666553221    3344


Q ss_pred             ccCCCCCcEEEccCCCCCCc----cccccCC--CCcccEEEccCCccccCccEEEeccCCCcc-----cCccCC-CCCCC
Q 036772          225 LCNLKSLQYLFLSGCLKLEK----LPEEIGN--LESLKIMLANETAISQNLVDMSLVDCGITE-----LPESLG-RSPSL  292 (583)
Q Consensus       225 l~~l~~L~~L~l~~c~~l~~----lp~~l~~--l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~-----lp~~l~-~l~~L  292 (583)
                      +...++|++|++++|.....    +-+.+..  .+.              |++|++++|.+..     +...+. .+++|
T Consensus       239 l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~--------------L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L  304 (344)
T d2ca6a1         239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG--------------LQTLRLQYNEIELDAVRTLKTVIDEKMPDL  304 (344)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC--------------CCEEECCSSCCBHHHHHHHHHHHHHHCTTC
T ss_pred             ccccccchhhhhhcCccCchhhHHHHHHhhhccCCC--------------CCEEECCCCcCChHHHHHHHHHHHccCCCC
Confidence            55566666666666653321    1111211  123              4444444444433     333332 56789


Q ss_pred             CEEEccCCCCcccChhh
Q 036772          293 KFLNLAENDFEKIPSSI  309 (583)
Q Consensus       293 ~~L~Ls~n~l~~lp~~i  309 (583)
                      +.|+|++|.+..-...+
T Consensus       305 ~~L~l~~N~~~~~~~~~  321 (344)
T d2ca6a1         305 LFLELNGNRFSEEDDVV  321 (344)
T ss_dssp             CEEECTTSBSCTTSHHH
T ss_pred             CEEECCCCcCCCcchHH
Confidence            99999999987544433

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.92  E-value=2.8e-11  Score=111.45  Aligned_cols=107  Identities=22%  Similarity=0.263  Sum_probs=52.9

Q ss_pred             CccccccccCCCCccEEeeeCCCCCccccccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCCccccC-----
Q 036772          194 IEELPSSIGNLSRLVRLDLTNCSRLKSVSNSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANETAISQN-----  268 (583)
Q Consensus       194 i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~~i~~~-----  268 (583)
                      ++.++.++..+++|++|++++|.. +.++ .+..+++|++|++++|. +..+|.....+++|+.|++++|.+...     
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~I-~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~  113 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLSGIEK  113 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEEE-SCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEECCCHHHHHH
T ss_pred             hhhhhhHHhcccccceeECcccCC-CCcc-cccCCccccChhhcccc-cccccccccccccccccccccccccccccccc
Confidence            445555566666666666666543 2333 35556666666666653 233443333344455555555444321     


Q ss_pred             ---ccEEEeccCCCcccC--ccCCCCCCCCEEEccCCCCc
Q 036772          269 ---LVDMSLVDCGITELP--ESLGRSPSLKFLNLAENDFE  303 (583)
Q Consensus       269 ---L~~L~L~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~  303 (583)
                         |+.|++++|.+++++  ..+..+++|+.|++++|.+.
T Consensus       114 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         114 LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccccccchhccccccccccCCCccceeecCCCccc
Confidence               333333444343333  23455555555555555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.87  E-value=8.9e-12  Score=114.82  Aligned_cols=111  Identities=17%  Similarity=0.164  Sum_probs=69.2

Q ss_pred             eecCCcccccCCCccEEEecCCCCCCCCCCCCCCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCCCCCCCC
Q 036772           35 VRHSRCLESFFNELRYFQWDGYPLKSLPSKNIPEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIPDLSLAL  114 (583)
Q Consensus        35 ~~l~~~l~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p~l~~l~  114 (583)
                      ..++..+..+ .+|++|++++|.++.++..-.+++|++|++++|.++.++.....+++|++|++++|. ++.++.+..++
T Consensus        38 ~~l~~sl~~L-~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~-i~~l~~~~~l~  115 (198)
T d1m9la_          38 EKMDATLSTL-KACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLSGIEKLV  115 (198)
T ss_dssp             CCCHHHHHHT-TTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEE-CCCHHHHHHHH
T ss_pred             hhhhhHHhcc-cccceeECcccCCCCcccccCCccccChhhccccccccccccccccccccccccccc-ccccccccccc
Confidence            3444556666 467777777777777654336667777777777776665544555667777777764 33445566666


Q ss_pred             CcCEEeeeCCCCchhhh--hhccCCCCCCEEEccCC
Q 036772          115 NLEWLDLVGCASLIEIH--SSIQHLNKLVFLNLGRC  148 (583)
Q Consensus       115 ~L~~L~L~~~~~l~~~~--~~i~~l~~L~~L~L~~c  148 (583)
                      +|++|++++|... .++  ..++.+++|+.|++++|
T Consensus       116 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         116 NLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSS
T ss_pred             cccccccccchhc-cccccccccCCCccceeecCCC
Confidence            7777777765432 222  34666777777777664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=8.4e-09  Score=90.53  Aligned_cols=105  Identities=21%  Similarity=0.165  Sum_probs=74.1

Q ss_pred             CCCceEEEccCCChhhhcccccCCCCccEEeccCCCCCCCCC--CCCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEE
Q 036772           67 PEHLVSLEMPHSNIEQLWNGVQNLAALKRLNLSYCKQLSRIP--DLSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLN  144 (583)
Q Consensus        67 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~~~~l~~~p--~l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~  144 (583)
                      +....+++..++.+...|..+..+++|+.|+++++..++.++  .|..+++|+.|+|++|.....-+..+..+++|+.|+
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            334456777777777777777777788888887665555554  477788888888888764443456678888888888


Q ss_pred             ccCCCCCCcCCCcC-CCCCccEEEecCCC
Q 036772          145 LGRCISLKSLPTGI-NLDSLKVLYLGGCS  172 (583)
Q Consensus       145 L~~c~~l~~lp~~~-~l~~L~~L~L~~c~  172 (583)
                      |++ +.++.+|..+ ...+|++|+|++|+
T Consensus        87 Ls~-N~l~~l~~~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          87 LSF-NALESLSWKTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             CCS-SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             ccC-CCCcccChhhhccccccccccCCCc
Confidence            887 5677777765 55567777777753

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=4.2e-08  Score=85.89  Aligned_cols=105  Identities=17%  Similarity=0.111  Sum_probs=67.2

Q ss_pred             CEEeccCCCCccccccccCCCCccEEeeeCCCCCcccc-ccccCCCCCcEEEccCCCCCCccccccCCCCcccEEEccCC
Q 036772          185 ENLDLSETAIEELPSSIGNLSRLVRLDLTNCSRLKSVS-NSLCNLKSLQYLFLSGCLKLEKLPEEIGNLESLKIMLANET  263 (583)
Q Consensus       185 ~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp-~~l~~l~~L~~L~l~~c~~l~~lp~~l~~l~~L~~L~l~~~  263 (583)
                      +.++..++.+.+.|..+..+++|+.|++++++.++.++ ..|.++++|+.|++++|.....-+..+..+++|+.|++++|
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            44666667777777777778888888887766555554 45777778888887776544333455666666555555554


Q ss_pred             ccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCCCc
Q 036772          264 AISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAENDFE  303 (583)
Q Consensus       264 ~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~  303 (583)
                      ++.              .+|..+....+|+.|+|++|.+.
T Consensus        91 ~l~--------------~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          91 ALE--------------SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCS--------------CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCc--------------ccChhhhccccccccccCCCccc
Confidence            433              35554444446777777777654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.00  E-value=0.00028  Score=61.41  Aligned_cols=112  Identities=16%  Similarity=0.190  Sum_probs=61.5

Q ss_pred             cCCCCccEEeeeCCCCCcc-----ccccccCCCCCcEEEccCCCCCC----ccccccCCCCcccEEEccCCccccCccEE
Q 036772          202 GNLSRLVRLDLTNCSRLKS-----VSNSLCNLKSLQYLFLSGCLKLE----KLPEEIGNLESLKIMLANETAISQNLVDM  272 (583)
Q Consensus       202 ~~l~~L~~L~L~~~~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~----~lp~~l~~l~~L~~L~l~~~~i~~~L~~L  272 (583)
                      .+.+.|+.|+|++++..+.     +-..+...+.|++|++++|....    .+.+.+...+.|+.|++++|.+...    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~----   87 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE----   87 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH----
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH----
Confidence            3567888888887554332     33455667778888888875432    2222333344555544444443320    


Q ss_pred             EeccCCCcccCccCCCCCCCCEEEccCCCCccc--------ChhhhccCccccccccc
Q 036772          273 SLVDCGITELPESLGRSPSLKFLNLAENDFEKI--------PSSIKQLSNLLFLTLQN  322 (583)
Q Consensus       273 ~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~l--------p~~i~~l~~L~~L~L~~  322 (583)
                           ....+-..+...++|++|++++|.+..+        ...+...+.|+.|+++.
T Consensus        88 -----g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          88 -----LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             -----HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             -----HHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence                 0001334566778888888888765533        23334445555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=3.6e-05  Score=67.00  Aligned_cols=37  Identities=22%  Similarity=0.226  Sum_probs=19.5

Q ss_pred             CCCcCEEeccCCCCcccc---ccccCCCCccEEeeeCCCC
Q 036772          181 SCNIENLDLSETAIEELP---SSIGNLSRLVRLDLTNCSR  217 (583)
Q Consensus       181 ~~~L~~L~L~~~~i~~lp---~~i~~l~~L~~L~L~~~~~  217 (583)
                      .++|++|++++|.|+.++   ..+..+++|+.|++++|..
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i  103 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL  103 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCC
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcc
Confidence            445555666666555443   2234455566666655543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=4.1e-05  Score=66.63  Aligned_cols=67  Identities=28%  Similarity=0.140  Sum_probs=37.6

Q ss_pred             hhcccccCCCCccEEeccCCCCCCCCCC----CCCCCCcCEEeeeCCCCchhhhhhccCCCCCCEEEccCCC
Q 036772           82 QLWNGVQNLAALKRLNLSYCKQLSRIPD----LSLALNLEWLDLVGCASLIEIHSSIQHLNKLVFLNLGRCI  149 (583)
Q Consensus        82 ~l~~~~~~l~~L~~L~Ls~~~~l~~~p~----l~~l~~L~~L~L~~~~~l~~~~~~i~~l~~L~~L~L~~c~  149 (583)
                      .+......+++|++|+|++|+... +++    +..+++|+.|+|++|.....-+-......+|+.|+++++.
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~-l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYR-LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCC-CSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             hhHHHHHhCCCCCEeeCCCccccC-CchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence            333334567788888888885443 322    3456777777777765433211122233456777777643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.39  E-value=0.00081  Score=58.35  Aligned_cols=117  Identities=13%  Similarity=0.100  Sum_probs=76.8

Q ss_pred             ccCCCcCEEeccCC-CCcc-----ccccccCCCCccEEeeeCCCCCcc----ccccccCCCCCcEEEccCCCCCC----c
Q 036772          179 EISCNIENLDLSET-AIEE-----LPSSIGNLSRLVRLDLTNCSRLKS----VSNSLCNLKSLQYLFLSGCLKLE----K  244 (583)
Q Consensus       179 ~~~~~L~~L~L~~~-~i~~-----lp~~i~~l~~L~~L~L~~~~~l~~----lp~~l~~l~~L~~L~l~~c~~l~----~  244 (583)
                      ...++|++|+|+++ .++.     +-..+...+.|+.|+|++|.....    +...+...+.|++|++++|....    .
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34578999999974 4652     444577889999999999876533    33455667899999999997543    2


Q ss_pred             cccccCCCCcccEEEccCCccccCccEEEeccCCCcccCccCCCCCCCCEEEccCCC
Q 036772          245 LPEEIGNLESLKIMLANETAISQNLVDMSLVDCGITELPESLGRSPSLKFLNLAEND  301 (583)
Q Consensus       245 lp~~l~~l~~L~~L~l~~~~i~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~Ls~n~  301 (583)
                      +-..+...++|++|+++++.+...      ..-....+...+...++|+.|+++.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~------g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVL------GNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCC------CHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCc------cHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            334566667788777776653320      000001133445567889999987764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.88  E-value=0.002  Score=55.51  Aligned_cols=113  Identities=20%  Similarity=0.222  Sum_probs=63.5

Q ss_pred             ccCCCCccEEeeeCCCCCcc-----ccccccCCCCCcEEEccCCCCCCc----cccccCCCCcccEEEccCCccccCccE
Q 036772          201 IGNLSRLVRLDLTNCSRLKS-----VSNSLCNLKSLQYLFLSGCLKLEK----LPEEIGNLESLKIMLANETAISQNLVD  271 (583)
Q Consensus       201 i~~l~~L~~L~L~~~~~l~~-----lp~~l~~l~~L~~L~l~~c~~l~~----lp~~l~~l~~L~~L~l~~~~i~~~L~~  271 (583)
                      ..+.+.|++|+++++..++.     +-..+...++|++|++++|.....    +-+.+...++++.++++++.+...   
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~---   89 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS---   89 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH---
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch---
Confidence            35668899999887554332     334556678888888888754322    222333444555554444433210   


Q ss_pred             EEeccCCCcccCccCCCCCCCCEEEcc--CCCCc-----ccChhhhccCccccccccc
Q 036772          272 MSLVDCGITELPESLGRSPSLKFLNLA--ENDFE-----KIPSSIKQLSNLLFLTLQN  322 (583)
Q Consensus       272 L~L~~~~l~~lp~~l~~l~~L~~L~Ls--~n~l~-----~lp~~i~~l~~L~~L~L~~  322 (583)
                            ....+...+...++|+.++|.  +|.+.     .+...+...+.|+.|+++.
T Consensus        90 ------g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          90 ------GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             ------HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             ------hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence                  001134556667788876664  44554     3444556667777777654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.78  E-value=0.014  Score=49.84  Aligned_cols=17  Identities=12%  Similarity=0.094  Sum_probs=9.2

Q ss_pred             cCCCCCCCCEEEccCCC
Q 036772          285 SLGRSPSLKFLNLAEND  301 (583)
Q Consensus       285 ~l~~l~~L~~L~Ls~n~  301 (583)
                      .+...++|+.|++..+.
T Consensus       127 ~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         127 MLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHCSSCCEEECCCSS
T ss_pred             HHHhCCCcCEEeCcCCC
Confidence            34445566666665554