Citrus Sinensis ID: 036778

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLLGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWSTIETKGRTLEEIQRSIIKFSQ
Secondary Structure (PSIPRED)
ccccccccccHHHHcHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHEEEEEHHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MLMQTLGGSTAIAYYASSIFDVasnklstkfgNFRISILRHIQSLFqvpvvgssvlladkfgrrplllgytitfskgmvrlpnlimFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWstietkgrTLEEIQRSIIKFSQ
Flexible Loop (DISEMBL)
MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLLGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWSTIETKGRTLEEIQRSIIKFSQ
Low Complexity Region (SEG)
MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLLGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWSTIETKGRTLEEIQRSIIKFSQ
Disordered region (IsUnstruct)
*******GSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLLGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWSTIETKGRTLEEI*********
Disordered Region (DISOPRED)
MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLLGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWSTIETKGRTLEEIQRSII****
Disordered Region (DISEMBL)
********STAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLLGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWSTIETKGRTLEEIQRSIIKFSQ
Disordered Region (DISPRO)
MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLLGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWSTIETKGRTLEEIQRSIIK***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLLGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWSTIETKGRTLEEIQRSIIKFSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
Q3ECP7	470	Sugar transporter ERD6-li	yes	no	0.903	0.278	0.345	6e-19
Q94CI6	478	Sugar transporter ERD6-li	no	no	0.917	0.278	0.331	2e-18
Q94KE0	470	Sugar transporter ERD6-li	no	no	0.937	0.289	0.326	5e-18
Q94CI7	474	Sugar transporter ERD6-li	no	no	0.910	0.278	0.328	2e-17
Q4F7G0	462	Sugar transporter ERD6-li	no	no	0.910	0.285	0.323	2e-15
O04036	496	Sugar transporter ERD6 OS	no	no	0.882	0.258	0.324	3e-15
Q94AF9	467	Sugar transporter ERD6-li	no	no	0.903	0.280	0.31	9e-15
Q93Z80	458	Sugar transporter ERD6-li	no	no	0.903	0.286	0.3	3e-14
Q8LBI9	482	Sugar transporter ERD6-li	no	no	0.910	0.273	0.31	7e-14
P93051	463	Sugar transporter ERD6-li	no	no	0.882	0.276	0.284	3e-13

>sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2

 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/200 (34%), Positives = 93/200 (46%), Gaps = 69/200 (34%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK 60
           M++Q  GG   IA+YASSIF+  S  +S+K G   + ++       Q+P+    VLL DK
Sbjct: 275 MVLQQFGGVNGIAFYASSIFE--SAGVSSKIGMIAMVVV-------QIPMTTLGVLLMDK 325

Query: 61  FGRRPLLL--------------------------------------GYTITFSKGMVRLP 82
            GRRPLLL                                       YT +FS GM  +P
Sbjct: 326 SGRRPLLLISATGTCIGCFLVGLSFSLQFVKQLSGDASYLALTGVLVYTGSFSLGMGGIP 385

Query: 83  NLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWSTI---------------- 126
            +IM E F I+IKGSAGSLVT +    + ++++ FNF++ W+                  
Sbjct: 386 WVIMSEIFPIDIKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFATVCGATVIF 445

Query: 127 ------ETKGRTLEEIQRSI 140
                 ETKGRTLEEIQ SI
Sbjct: 446 VAKLVPETKGRTLEEIQYSI 465

Sugar transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94CI6|EDL18_ARATH Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/202 (33%), Positives = 93/202 (46%), Gaps = 69/202 (34%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK 60
           ML+Q   GS+A+  YAS+I   A          F ++I   +  LF +P     V+L DK
Sbjct: 278 MLIQQFSGSSAVLSYASTILRKA---------GFSVTIGSTLLGLFMIPKAMIGVILVDK 328

Query: 61  FGRRPLLLG--------------------------------------YTITFSKGMVRLP 82
           +GRRPLLL                                       Y  T++ G+  LP
Sbjct: 329 WGRRPLLLTSVSGMCITSMLIGVAFTLQKMQLLPELTPVFTFICVTLYIGTYAIGLGGLP 388

Query: 83  NLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWST----------------- 125
            +IM E F +NIK +AGS+VT +  +S+S+V YAFNF++EWST                 
Sbjct: 389 WVIMSEIFPMNIKVTAGSIVTLVSWSSSSIVTYAFNFLLEWSTQGTFYVFGAVGGLALLF 448

Query: 126 -----IETKGRTLEEIQRSIIK 142
                 ETKG +LEEIQ S+I+
Sbjct: 449 IWLLVPETKGLSLEEIQASLIR 470

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 93/205 (45%), Gaps = 69/205 (33%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK 60
           ML+Q L GS+ + YY  S+FD          G F  SI   I ++  +P     ++L +K
Sbjct: 275 MLLQQLSGSSGLMYYVGSVFDK---------GGFPSSIGSMILAVIMIPKALLGLILVEK 325

Query: 61  FGRRPLLL--------------------------------------GYTITFSKGMVRLP 82
            GRRPLLL                                      G+  +F+ GM  LP
Sbjct: 326 MGRRPLLLASTGGMCFFSLLLSFSFCFRSYGMLDELTPIFTCIGVVGFISSFAVGMGGLP 385

Query: 83  NLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWS---------TI------- 126
            +IM E F +N+K SAG+LVT  + +   +VA+A+NFM+EW+         TI       
Sbjct: 386 WIIMSEIFPMNVKVSAGTLVTLANWSFGWIVAFAYNFMLEWNASGTFLIFFTICGAGIVF 445

Query: 127 ------ETKGRTLEEIQRSIIKFSQ 145
                 ETKGRTLE+IQ S+  F Q
Sbjct: 446 IYAMVPETKGRTLEDIQASLTDFLQ 470

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94CI7|EDL17_ARATH Sugar transporter ERD6-like 17 OS=Arabidopsis thaliana GN=SFP1 PE=2 SV=2

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 91/201 (45%), Gaps = 69/201 (34%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK 60
           ML+Q   GS A+  YAS+IF  A          F ++I   +  +F +P     ++L DK
Sbjct: 274 MLIQQFSGSAAVISYASTIFRKA---------GFSVAIGTTMLGIFVIPKAMIGLILVDK 324

Query: 61  FGRRPLLLG--------------------------------------YTITFSKGMVRLP 82
           +GRRPLL+                                       Y  T++ G+  LP
Sbjct: 325 WGRRPLLMTSAFGMSMTCMLLGVAFTLQKMQLLSELTPILSFICVMMYIATYAIGLGGLP 384

Query: 83  NLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWST----------------- 125
            +IM E F INIK +AGS+VT +  +S+S+V YAFNF+ EWST                 
Sbjct: 385 WVIMSEIFPINIKVTAGSIVTLVSFSSSSIVTYAFNFLFEWSTQGTFFIFAGIGGAALLF 444

Query: 126 -----IETKGRTLEEIQRSII 141
                 ETKG +LEEIQ S+I
Sbjct: 445 IWLLVPETKGLSLEEIQVSLI 465

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q4F7G0|ERDL2_ARATH Sugar transporter ERD6-like 2 OS=Arabidopsis thaliana GN=SUGTL3 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 65/201 (32%), Positives = 88/201 (43%), Gaps = 69/201 (34%)

Query: 4   QTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGR 63
           Q   GS AI+ YA+ IFD A          F   I   I ++  +P     +L  D++GR
Sbjct: 271 QQFCGSAAISAYAARIFDKA---------GFPSDIGTTILAVILIPQSIVVMLTVDRWGR 321

Query: 64  RPLLL--------------------------------------GYTITFSKGMVRLPNLI 85
           RPLL+                                      GY  +F  G+  LP +I
Sbjct: 322 RPLLMISSIGMCICSFFIGLSYYLQKNGEFQKLCSVMLIVGLVGYVSSFGIGLGGLPWVI 381

Query: 86  MFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWS--------------TI----- 126
           M E F +N+K +AGSLVT  +   N ++ Y+FNFMI+WS              TI     
Sbjct: 382 MSEIFPVNVKITAGSLVTMSNWFFNWIIIYSFNFMIQWSASGTYFIFSGVSLVTIVFIWT 441

Query: 127 ---ETKGRTLEEIQRSIIKFS 144
              ETKGRTLEEIQ S+++ S
Sbjct: 442 LVPETKGRTLEEIQTSLVRLS 462

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O04036|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 87/197 (44%), Gaps = 69/197 (35%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK 60
           M +Q L GS+ + YYASS+F    NK     G F  +I   + +   VP    + +L DK
Sbjct: 301 MFLQQLCGSSGVTYYASSLF----NK-----GGFPSAIGTSVIATIMVPKAMLATVLVDK 351

Query: 61  FGRRPLL--------------------------------------LGYTITFSKGMVRLP 82
            GRR LL                                      LG+ ++F+ GM  LP
Sbjct: 352 MGRRTLLMASCSAMGLSALLLSVSYGFQSFGILPELTPIFTCIGVLGHIVSFAMGMGGLP 411

Query: 83  NLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEW--------------STI-- 126
            +IM E F +N+K SAG+LVT  +     ++ Y FNFM+EW              S+I  
Sbjct: 412 WIIMAEIFPMNVKVSAGTLVTVTNWLFGWIITYTFNFMLEWNASGMFLIFSMVSASSIVF 471

Query: 127 ------ETKGRTLEEIQ 137
                 ETKGR+LEEIQ
Sbjct: 472 IYFLVPETKGRSLEEIQ 488

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AF9|EDL11_ARATH Sugar transporter ERD6-like 11 OS=Arabidopsis thaliana GN=At3g05165 PE=2 SV=2

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 86/200 (43%), Gaps = 69/200 (34%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK 60
           ML+Q L G++ I YY+++IF  A    S + G+        I  +F +P     ++L D+
Sbjct: 273 MLIQQLSGASGITYYSNAIFRKAG--FSERLGSM-------IFGVFVIPKALVGLILVDR 323

Query: 61  FGRRPLLLG--------------------------------------YTITFSKGMVRLP 82
           +GRRPLLL                                       Y   F+ G+  LP
Sbjct: 324 WGRRPLLLASAVGMSIGSLLIGVSFTLQQMNVLPELIPIFVFVNILVYFGCFAFGIGGLP 383

Query: 83  NLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWST----------------- 125
            +IM E F INIK SAG++V      S   V+YAFNFM EWS                  
Sbjct: 384 WVIMSEIFPINIKVSAGTIVALTSWTSGWFVSYAFNFMFEWSAQGTFYIFAAVGGMSFIF 443

Query: 126 -----IETKGRTLEEIQRSI 140
                 ETKG++LEE+Q S+
Sbjct: 444 IWMLVPETKGQSLEELQASL 463

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z80|EDL10_ARATH Sugar transporter ERD6-like 10 OS=Arabidopsis thaliana GN=At3g05160 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 85/200 (42%), Gaps = 69/200 (34%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK 60
           ML+Q L G++ I YY+++IF  A    S + G+        I  +F +P     ++L D+
Sbjct: 264 MLIQQLSGASGITYYSNAIFRKAG--FSERLGSM-------IFGVFVIPKALVGLILVDR 314

Query: 61  FGRRPLLLGYTIT--------------------------------------FSKGMVRLP 82
           +GRRPLLL   +                                       F+ G+  LP
Sbjct: 315 WGRRPLLLASAVGMSIGSLLIGVSFTLQEMNLFPEFIPVFVFINILVYFGFFAIGIGGLP 374

Query: 83  NLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWST----------------- 125
            +IM E F INIK SAGS+V      +   V+Y FNFM EWS                  
Sbjct: 375 WIIMSEIFPINIKVSAGSIVALTSWTTGWFVSYGFNFMFEWSAQGTFYIFAMVGGLSLLF 434

Query: 126 -----IETKGRTLEEIQRSI 140
                 ETKG++LEE+Q S+
Sbjct: 435 IWMLVPETKGQSLEELQASL 454

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBI9|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2

 Score = 76.3 bits (186), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 81/200 (40%), Gaps = 68/200 (34%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK 60
           M+ Q   G   I +YAS  F V +   S K G   I+ +       QVP+     +L DK
Sbjct: 287 MVFQQFVGINGIGFYASETF-VKAGFTSGKLGTIAIACV-------QVPITVLGTILIDK 338

Query: 61  FGRRPLL--------------------------------------LGYTITFSKGMVRLP 82
            GRRPL+                                      L Y   FS GM  +P
Sbjct: 339 SGRRPLIMISAGGIFLGCILTGTSFLLKGQSLLLEWVPSLAVGGVLIYVAAFSIGMGPVP 398

Query: 83  NLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWST----------------- 125
            +IM E F IN+KG AGSLV  ++ +    V+Y FNF++ WS+                 
Sbjct: 399 WVIMSEIFPINVKGIAGSLVVLVNWSGAWAVSYTFNFLMSWSSPGTFYLYSAFAAATIIF 458

Query: 126 -----IETKGRTLEEIQRSI 140
                 ETKG+TLEEIQ  I
Sbjct: 459 VAKMVPETKGKTLEEIQACI 478

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|P93051|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 81/197 (41%), Gaps = 69/197 (35%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK 60
           M+ Q  GG   I +Y SSIF+ A     T+ G    ++L+ + +    P+V       D+
Sbjct: 271 MVFQQFGGINGICFYTSSIFEQAG--FPTRLGMIIYAVLQVVITALNAPIV-------DR 321

Query: 61  FGRRPLLLG--------------------------------------YTITFSKGMVRLP 82
            GR+PLLL                                       Y  +FS GM  +P
Sbjct: 322 AGRKPLLLVSATGLVIGCLIAAVSFYLKVHDMAHEAVPVLAVVGIMVYIGSFSAGMGAMP 381

Query: 83  NLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWSTI---------------- 126
            ++M E F INIKG AG + T ++      V+Y FNF++ WS+                 
Sbjct: 382 WVVMSEIFPINIKGVAGGMATLVNWFGAWAVSYTFNFLMSWSSYGTFLIYAAINALAIVF 441

Query: 127 ------ETKGRTLEEIQ 137
                 ETKG+TLE+IQ
Sbjct: 442 VIAIVPETKGKTLEQIQ 458

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
255542516	476	sugar transporter, putative [Ricinus com	0.937	0.285	0.360	3e-21
298205029	474	unnamed protein product [Vitis vinifera]	0.910	0.278	0.368	2e-20
2342688	378	Similar to Beta integral membrane protei	0.931	0.357	0.403	2e-20
359487977	920	PREDICTED: sugar transporter ERD6-like 5	0.910	0.143	0.368	2e-20
310877856	475	putative ERD6-like transporter [Vitis vi	0.910	0.277	0.366	2e-20
310877888	285	putative ERD6-like transporter [Vitis vi	0.937	0.477	0.359	4e-20
359487980	486	PREDICTED: sugar transporter ERD6-like 5	0.937	0.279	0.356	1e-19
124361039	481	General substrate transporter; Sugar tra	0.937	0.282	0.359	1e-19
357512085	495	Sugar transporter ERD6, putative [Medica	0.937	0.274	0.359	1e-19
298205030	437	unnamed protein product [Vitis vinifera]	0.937	0.311	0.354	1e-19

>gi|255542516|ref|XP_002512321.1| sugar transporter, putative [Ricinus communis] gi|223548282|gb|EEF49773.1| sugar transporter, putative [Ricinus communis]

 Score =  106 bits (265), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/205 (36%), Positives = 96/205 (46%), Gaps = 69/205 (33%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK 60
           M  Q  GG+ AIA+YASSIF+ A    S+  G   ++I+       Q+P V  SVLL DK
Sbjct: 281 MAFQQFGGTNAIAFYASSIFEEA--DFSSSVGLISMAII-------QIPAVAISVLLTDK 331

Query: 61  FGRRPLLL--------------------------------------GYTITFSKGMVRLP 82
            GRRPLL+                                      G++I+F  GM  +P
Sbjct: 332 AGRRPLLMVSASGMCLSCLIIGLAFCLQGLDKAKEITPILVYIGIMGFSISFPFGMAGIP 391

Query: 83  NLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWST----------------- 125
            +IM E F INIKG AGSLV  ++   + +V+Y FNFM+EWS+                 
Sbjct: 392 WIIMSEVFPINIKGVAGSLVIAINWTCSWVVSYTFNFMMEWSSSGTFFIYAGVCALAVLF 451

Query: 126 -----IETKGRTLEEIQRSIIKFSQ 145
                 ETKGR LEE+Q SI  F Q
Sbjct: 452 IAKVVPETKGRMLEELQASIAHFLQ 476

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205029|emb|CBI34336.3| unnamed protein product [Vitis vinifera]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/201 (36%), Positives = 94/201 (46%), Gaps = 69/201 (34%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK 60
           M++Q  GGS AIAYYAS+IF+  S   S+ FG   ++IL       Q+PV   +V L DK
Sbjct: 282 MVLQQFGGSNAIAYYASAIFE--SADFSSTFGIRAMAIL-------QIPVTLLAVFLIDK 332

Query: 61  FGRRPLL--------------------------------------LGYTITFSKGMVRLP 82
            GRRPLL                                      L YT +FS G+  LP
Sbjct: 333 CGRRPLLMVSAAGMCLSCLVVALSFLLQDLHQWKEITPILVLIGILAYTASFSMGVAGLP 392

Query: 83  NLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWSTI---------------- 126
            ++M E F INIKGSAGSLVT  +   + +  Y FNF+ EWS+                 
Sbjct: 393 WVVMSEIFPINIKGSAGSLVTLSNWFCSWITTYTFNFVFEWSSAGTFLLFSIICGATVLF 452

Query: 127 ------ETKGRTLEEIQRSII 141
                 ETKGR LEEIQ ++I
Sbjct: 453 VAKLLPETKGRRLEEIQATMI 473

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2342688|gb|AAB70414.1| Similar to Beta integral membrane protein (gb|U43629) [Arabidopsis thaliana]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 91/166 (54%), Gaps = 31/166 (18%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK 60
           ML+Q   GS AI+ YA+ IFD A          F   I   I ++  +P     +L  D+
Sbjct: 222 MLLQQFCGSAAISAYAARIFDKA---------GFPSDIGTTILAVILIPQSIVVMLTVDR 272

Query: 61  FGRRPLLLGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFM 120
           +GRRPLL+GY  +F  G+  LP +IM E F +N+K +AGSLVT  +   N ++ Y+FNFM
Sbjct: 273 WGRRPLLMGYVSSFGIGLGGLPWVIMSEIFPVNVKITAGSLVTMSNWFFNWIIIYSFNFM 332

Query: 121 IEWS--------------TI--------ETKGRTLEEIQRSIIKFS 144
           I+WS              TI        ETKGRTLEEIQ S+++ S
Sbjct: 333 IQWSASGTYFIFSGVSLVTIVFIWTLVPETKGRTLEEIQTSLVRLS 378

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487977|ref|XP_002263553.2| PREDICTED: sugar transporter ERD6-like 5-like [Vitis vinifera]

 Score =  103 bits (258), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/201 (36%), Positives = 94/201 (46%), Gaps = 69/201 (34%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK 60
           M++Q  GGS AIAYYAS+IF+  S   S+ FG   ++IL       Q+PV   +V L DK
Sbjct: 728 MVLQQFGGSNAIAYYASAIFE--SADFSSTFGIRAMAIL-------QIPVTLLAVFLIDK 778

Query: 61  FGRRPLL--------------------------------------LGYTITFSKGMVRLP 82
            GRRPLL                                      L YT +FS G+  LP
Sbjct: 779 CGRRPLLMVSAAGMCLSCLVVALSFLLQDLHQWKEITPILVLIGILAYTASFSMGVAGLP 838

Query: 83  NLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWSTI---------------- 126
            ++M E F INIKGSAGSLVT  +   + +  Y FNF+ EWS+                 
Sbjct: 839 WVVMSEIFPINIKGSAGSLVTLSNWFCSWITTYTFNFVFEWSSAGTFLLFSIICGATVLF 898

Query: 127 ------ETKGRTLEEIQRSII 141
                 ETKGR LEEIQ ++I
Sbjct: 899 VAKLLPETKGRRLEEIQATMI 919

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|310877856|gb|ADP37159.1| putative ERD6-like transporter [Vitis vinifera]

 Score =  103 bits (257), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/202 (36%), Positives = 94/202 (46%), Gaps = 70/202 (34%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK 60
           M++Q  GGS AIAYYAS+IF+  S   S+ FG   ++IL       Q+PV   +V L DK
Sbjct: 282 MVLQQFGGSNAIAYYASAIFE--SADFSSTFGIRAMAIL-------QIPVTLLAVFLIDK 332

Query: 61  FGRRPLL---------------------------------------LGYTITFSKGMVRL 81
            GRRPLL                                       L YT +FS G+  L
Sbjct: 333 CGRRPLLMVSAAGMCLSCLVVALSFLLQQDLHQWKEITPILVLIGILAYTASFSMGVAGL 392

Query: 82  PNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWSTI--------------- 126
           P ++M E F INIKGSAGSLVT  +   + +  Y FNF+ EWS+                
Sbjct: 393 PWVVMSEIFPINIKGSAGSLVTLSNWFCSWITTYTFNFVFEWSSAGTFLLFSIICGATVL 452

Query: 127 -------ETKGRTLEEIQRSII 141
                  ETKGR LEEIQ ++I
Sbjct: 453 FVAKLLPETKGRRLEEIQATMI 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|310877888|gb|ADP37175.1| putative ERD6-like transporter [Vitis vinifera]

 Score =  102 bits (255), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 96/206 (46%), Gaps = 70/206 (33%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK 60
           ML+Q L GS AI  YA SIF+  S   S+ FG    +I+       Q+PVV   VLLAD+
Sbjct: 88  MLLQQLAGSVAIPSYADSIFE--SADFSSTFGTTATAII-------QIPVVVIGVLLADR 138

Query: 61  FGRRPLL---------------------------------------LGYTITFSKGMVRL 81
            GRRPLL                                       + Y   +S G   L
Sbjct: 139 SGRRPLLIVSAAGMCLSCLIIGISFLLQVFSKYKFKHFYWKELTPIMAYLAWYSLGFRGL 198

Query: 82  PNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWSTI--------------- 126
           P +I+ E + +NIKGSAGSLVTF+  +S+++V Y FNF+ EW++                
Sbjct: 199 PWVIISEIYPVNIKGSAGSLVTFILWSSSTIVVYVFNFIFEWNSAGTFFIFSVFSAATVL 258

Query: 127 -------ETKGRTLEEIQRSIIKFSQ 145
                  ETKGRTLEEIQ S+  F Q
Sbjct: 259 FTIKLVPETKGRTLEEIQASMTHFLQ 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487980|ref|XP_003633684.1| PREDICTED: sugar transporter ERD6-like 5-like [Vitis vinifera]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/205 (35%), Positives = 96/205 (46%), Gaps = 69/205 (33%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK 60
           ML+Q L GS AI  YA SIF+  S   S+ FG    +I+       Q+P V   VLLAD+
Sbjct: 290 MLLQQLAGSIAIPSYAGSIFE--SADFSSTFGTTATAII-------QIPAVVIGVLLADR 340

Query: 61  FGRRPLLL--------------------------------------GYTITFSKGMVRLP 82
            GRRPLL+                                       Y   +S G   LP
Sbjct: 341 SGRRPLLIVSAAGMCLSCLIIGISFLLQDHHKWKELTPIMVLIGMVAYLAWYSLGFRGLP 400

Query: 83  NLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWSTI---------------- 126
            +I+ E + +NIKGSAGSLVTF+  +S+++V Y FNFM EW++                 
Sbjct: 401 WVIISEIYPVNIKGSAGSLVTFIVWSSSTIVVYVFNFMFEWNSAGTFFIFSVFSAATVLF 460

Query: 127 ------ETKGRTLEEIQRSIIKFSQ 145
                 ETKG+TLEEIQ S+ +F Q
Sbjct: 461 TKKLVPETKGQTLEEIQASMTQFLQ 485

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124361039|gb|ABN09011.1| General substrate transporter; Sugar transporter superfamily [Medicago truncatula]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 96/203 (47%), Gaps = 67/203 (33%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK 60
           +++Q  GG  AIA+YASSIF   S   S   G   + ++       Q+P+    V+L DK
Sbjct: 270 IILQQFGGVNAIAFYASSIF--VSAGFSRSIGTIAMVVV-------QIPMTALGVILMDK 320

Query: 61  FGRRPLLL------------------------------------GYTITFSKGMVRLPNL 84
            GRRPLLL                                     YT +FS GM  +P +
Sbjct: 321 SGRRPLLLISASGTCLGCFLVSLSFYLQDLHKEFSPILALVGVLVYTGSFSLGMGGIPWV 380

Query: 85  IMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEW---------STI--------- 126
           IM E F IN+KGSAGS VTF+H   + +V+YAFNF++ W         STI         
Sbjct: 381 IMSEIFPINVKGSAGSFVTFVHWLCSWIVSYAFNFLMSWNSAGTFFIFSTICGLTILFVA 440

Query: 127 ----ETKGRTLEEIQRSIIKFSQ 145
               ETKGRTLEE+Q S+  + Q
Sbjct: 441 KLVPETKGRTLEEVQASLNPYQQ 463

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512085|ref|XP_003626331.1| Sugar transporter ERD6, putative [Medicago truncatula] gi|355501346|gb|AES82549.1| Sugar transporter ERD6, putative [Medicago truncatula]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/203 (35%), Positives = 96/203 (47%), Gaps = 67/203 (33%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK 60
           +++Q  GG  AIA+YASSIF   S   S   G   + ++       Q+P+    V+L DK
Sbjct: 284 IILQQFGGVNAIAFYASSIF--VSAGFSRSIGTIAMVVV-------QIPMTALGVILMDK 334

Query: 61  FGRRPLLL------------------------------------GYTITFSKGMVRLPNL 84
            GRRPLLL                                     YT +FS GM  +P +
Sbjct: 335 SGRRPLLLISASGTCLGCFLVSLSFYLQDLHKEFSPILALVGVLVYTGSFSLGMGGIPWV 394

Query: 85  IMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEW---------STI--------- 126
           IM E F IN+KGSAGS VTF+H   + +V+YAFNF++ W         STI         
Sbjct: 395 IMSEIFPINVKGSAGSFVTFVHWLCSWIVSYAFNFLMSWNSAGTFFIFSTICGLTILFVA 454

Query: 127 ----ETKGRTLEEIQRSIIKFSQ 145
               ETKGRTLEE+Q S+  + Q
Sbjct: 455 KLVPETKGRTLEEVQASLNPYQQ 477

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205030|emb|CBI34337.3| unnamed protein product [Vitis vinifera]

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/206 (35%), Positives = 96/206 (46%), Gaps = 70/206 (33%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK 60
           ML+Q L GS AI  YA SIF+  S   S+ FG    +I+       Q+P V   VLLAD+
Sbjct: 240 MLLQQLAGSIAIPSYAGSIFE--SADFSSTFGTTATAII-------QIPAVVIGVLLADR 290

Query: 61  FGRRPLLL---------------------------------------GYTITFSKGMVRL 81
            GRRPLL+                                        Y   +S G   L
Sbjct: 291 SGRRPLLIVSAAGMCLSCLIIGISFLLQQDHHKWKELTPIMVLIGMVAYLAWYSLGFRGL 350

Query: 82  PNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWSTI--------------- 126
           P +I+ E + +NIKGSAGSLVTF+  +S+++V Y FNFM EW++                
Sbjct: 351 PWVIISEIYPVNIKGSAGSLVTFIVWSSSTIVVYVFNFMFEWNSAGTFFIFSVFSAATVL 410

Query: 127 -------ETKGRTLEEIQRSIIKFSQ 145
                  ETKG+TLEEIQ S+ +F Q
Sbjct: 411 FTKKLVPETKGQTLEEIQASMTQFLQ 436

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
TAIR|locus:2199539	470	AT1G54730 [Arabidopsis thalian	0.427	0.131	0.451	2.5e-22
TAIR|locus:2096234	458	AT3G05160 [Arabidopsis thalian	0.4	0.126	0.482	1e-18
TAIR|locus:2144975	482	AT5G18840 "AT5G18840" [Arabido	0.406	0.122	0.457	1.2e-17
TAIR|locus:2146365	478	SFP2 [Arabidopsis thaliana (ta	0.386	0.117	0.517	1.6e-17
TAIR|locus:505006329	467	AT3G05165 [Arabidopsis thalian	0.4	0.124	0.5	1.7e-15
TAIR|locus:2036009	462	AT1G08900 [Arabidopsis thalian	0.427	0.134	0.467	3.8e-15
TAIR|locus:2066400	463	AT2G48020 [Arabidopsis thalian	0.427	0.133	0.403	9.9e-14
TAIR|locus:2079802	462	AT3G05400 [Arabidopsis thalian	0.4	0.125	0.465	2e-13
TAIR|locus:2146350	474	SFP1 [Arabidopsis thaliana (ta	0.386	0.118	0.535	5.6e-13
TAIR|locus:2096219	470	AT3G05150 [Arabidopsis thalian	0.4	0.123	0.482	4.8e-11

TAIR|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 2.5e-22, Sum P(3) = 2.5e-22
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query:    67 LLGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWSTI 126
             +L YT +FS GM  +P +IM E F I+IKGSAGSLVT +    + ++++ FNF++ W+  
Sbjct:   370 VLVYTGSFSLGMGGIPWVIMSEIFPIDIKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPA 429

Query:   127 ET 128
              T
Sbjct:   430 GT 431

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2096234 AT3G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 1.0e-18, Sum P(3) = 1.0e-18
 Identities = 28/58 (48%), Positives = 35/58 (60%)

Query:    67 LLGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWS 124
             +L Y   F+ G+  LP +IM E F INIK SAGS+V      +   V+Y FNFM EWS
Sbjct:   359 ILVYFGFFAIGIGGLPWIIMSEIFPINIKVSAGSIVALTSWTTGWFVSYGFNFMFEWS 416

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2144975 AT5G18840 "AT5G18840" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 1.2e-17, Sum P(3) = 1.2e-17
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query:    67 LLGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWST 125
             +L Y   FS GM  +P +IM E F IN+KG AGSLV  ++ +    V+Y FNF++ WS+
Sbjct:   383 VLIYVAAFSIGMGPVPWVIMSEIFPINVKGIAGSLVVLVNWSGAWAVSYTFNFLMSWSS 441

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2146365 SFP2 [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
 Identities = 29/56 (51%), Positives = 42/56 (75%)

Query:    70 YTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWST 125
             Y  T++ G+  LP +IM E F +NIK +AGS+VT +  +S+S+V YAFNF++EWST
Sbjct:   376 YIGTYAIGLGGLPWVIMSEIFPMNIKVTAGSIVTLVSWSSSSIVTYAFNFLLEWST 431

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:505006329 AT3G05165 [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
 Identities = 29/58 (50%), Positives = 36/58 (62%)

Query:    67 LLGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWS 124
             +L Y   F+ G+  LP +IM E F INIK SAG++V      S   V+YAFNFM EWS
Sbjct:   368 ILVYFGCFAFGIGGLPWVIMSEIFPINIKVSAGTIVALTSWTSGWFVSYAFNFMFEWS 425

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2036009 AT1G08900 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
 Identities = 29/62 (46%), Positives = 41/62 (66%)

Query:    67 LLGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWSTI 126
             L+GY  +F  G+  LP +IM E F +N+K +AGSLVT  +   N ++ Y+FNFMI+WS  
Sbjct:   363 LVGYVSSFGIGLGGLPWVIMSEIFPVNVKITAGSLVTMSNWFFNWIIIYSFNFMIQWSAS 422

Query:   127 ET 128
              T
Sbjct:   423 GT 424

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
 Identities = 25/62 (40%), Positives = 38/62 (61%)

Query:    67 LLGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWSTI 126
             ++ Y  +FS GM  +P ++M E F INIKG AG + T ++      V+Y FNF++ WS+ 
Sbjct:   366 IMVYIGSFSAGMGAMPWVVMSEIFPINIKGVAGGMATLVNWFGAWAVSYTFNFLMSWSSY 425

Query:   127 ET 128
              T
Sbjct:   426 GT 427

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2079802 AT3G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query:    67 LLGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWS 124
             +L +T+ F+ GM  LP +IM E F ++IK  AGSLVT  +  +  +  YAFNFM+ WS
Sbjct:   364 ILSFTMMFAIGMGALPWIIMSEIFPMDIKVLAGSLVTIANWFTGWIANYAFNFMLVWS 421

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2146350 SFP1 [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query:    70 YTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWST 125
             Y  T++ G+  LP +IM E F INIK +AGS+VT +  +S+S+V YAFNF+ EWST
Sbjct:   372 YIATYAIGLGGLPWVIMSEIFPINIKVTAGSIVTLVSFSSSSIVTYAFNFLFEWST 427

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2096219 AT3G05150 [Arabidopsis thaliana (taxid:3702)]

 Score = 129 (50.5 bits), Expect = 4.8e-11, Sum P(2) = 4.8e-11
 Identities = 28/58 (48%), Positives = 41/58 (70%)

Query:    67 LLGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWS 124
             +L Y  +FS GM  +P +IM E F IN+KG+AG LVT ++  S+ LV++ FNF++ WS
Sbjct:   374 VLVYIGSFSIGMGAIPWVIMSEIFPINLKGTAGGLVTVVNWLSSWLVSFTFNFLMIWS 431

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006086001 SubName- Full=Chromosome chr14 scaffold_164, whole genome shotgun sequence; (475 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	145
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-04
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	0.001

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 39/196 (19%), Positives = 67/196 (34%), Gaps = 67/196 (34%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKF-GNFRISILRHIQSLFQVPVVGSSVLLAD 59
            + Q L G  AI YY+ +IF+  +  LS        + ++  + +         ++ L D
Sbjct: 261 QIFQQLTGINAIFYYSPTIFE--TLGLSDSLLVTIIVGVVNFVFTFI-------AIFLVD 311

Query: 60  KFGRRPLLLGYTITFSKGMVRL-------------------------------PNLIMF- 87
           +FGRRPLLL      +   + L                                  + + 
Sbjct: 312 RFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWV 371

Query: 88  ---ETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE---------------------- 122
              E F + ++  A ++ T  +  +N L+ + F  +                        
Sbjct: 372 IVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVF 431

Query: 123 WSTIETKGRTLEEIQR 138
           +   ETKGRTLEEI  
Sbjct: 432 FFVPETKGRTLEEIDE 447

Length = 449

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 42/197 (21%), Positives = 68/197 (34%), Gaps = 68/197 (34%)

Query: 1   MLMQTLGGSTAIAYYASSIFDVASNKLSTKF-GNFRISILRHIQSLFQVPVVGSSVLLAD 59
              Q   G  AI YY+ +IF+ A       F  +  +  +    +   + +V       D
Sbjct: 292 QWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLV-------D 344

Query: 60  KFGRRPLLL--------------------GYTITFSKGMVRLPNLIMF------------ 87
           +FGRRPLLL                        + S G V +  +++F            
Sbjct: 345 RFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVP 404

Query: 88  -----ETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE-------------------- 122
                E F ++++    S+    +  +N +V + F  M+E                    
Sbjct: 405 WVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLI 464

Query: 123 ---WSTIETKGRTLEEI 136
              +   ETKGRTLEEI
Sbjct: 465 FVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
KOG0569	485	consensus Permease of the major facilitator superf	99.85
KOG0254	513	consensus Predicted transporter (major facilitator	99.77
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.63
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.61
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.57
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.2
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.19
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.15
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.15
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.14
PRK10642	490	proline/glycine betaine transporter; Provisional	99.13
TIGR00893	399	2A0114 d-galactonate transporter.	99.06
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.05
TIGR00898	505	2A0119 cation transport protein.	99.03
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.03
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.02
PRK12307	426	putative sialic acid transporter; Provisional	99.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.97
KOG0569	485	consensus Permease of the major facilitator superf	98.97
PRK03545	390	putative arabinose transporter; Provisional	98.96
TIGR00895	398	2A0115 benzoate transport.	98.96
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.94
TIGR00891	405	2A0112 putative sialic acid transporter.	98.93
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.93
TIGR00900	365	2A0121 H+ Antiporter protein.	98.91
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.89
PLN00028	476	nitrate transmembrane transporter; Provisional	98.88
PRK09874	408	drug efflux system protein MdtG; Provisional	98.85
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.84
PRK11663	434	regulatory protein UhpC; Provisional	98.84
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.83
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.83
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.82
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.82
TIGR00898	505	2A0119 cation transport protein.	98.82
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.81
PRK10504	471	putative transporter; Provisional	98.8
PRK10091	382	MFS transport protein AraJ; Provisional	98.79
PRK10489	417	enterobactin exporter EntS; Provisional	98.79
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.79
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.78
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	98.78
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.78
PRK15075	434	citrate-proton symporter; Provisional	98.77
PRK12307	426	putative sialic acid transporter; Provisional	98.76
PRK09952	438	shikimate transporter; Provisional	98.76
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.75
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.74
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.74
PRK10642	490	proline/glycine betaine transporter; Provisional	98.74
PRK10054	395	putative transporter; Provisional	98.73
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.73
PRK15075	434	citrate-proton symporter; Provisional	98.73
PRK03893	496	putative sialic acid transporter; Provisional	98.7
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.7
PRK03699	394	putative transporter; Provisional	98.7
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.7
TIGR00895	398	2A0115 benzoate transport.	98.7
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.69
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.68
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.67
TIGR00891	405	2A0112 putative sialic acid transporter.	98.67
PRK12382	392	putative transporter; Provisional	98.67
TIGR00893	399	2A0114 d-galactonate transporter.	98.67
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.65
PRK09705	393	cynX putative cyanate transporter; Provisional	98.64
PRK03633	381	putative MFS family transporter protein; Provision	98.61
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	98.6
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.6
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.6
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.59
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.59
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.58
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.58
PRK11043	401	putative transporter; Provisional	98.57
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.56
PRK09705	393	cynX putative cyanate transporter; Provisional	98.56
PRK05122	399	major facilitator superfamily transporter; Provisi	98.55
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.55
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	98.54
TIGR00897	402	2A0118 polyol permease family. This family of prot	98.54
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.53
PRK03893	496	putative sialic acid transporter; Provisional	98.53
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.52
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.52
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.5
PRK11663	434	regulatory protein UhpC; Provisional	98.49
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.48
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.47
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.44
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.43
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.43
PRK09952	438	shikimate transporter; Provisional	98.4
PRK10133	438	L-fucose transporter; Provisional	98.37
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.36
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.36
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.35
TIGR00892	455	2A0113 monocarboxylate transporter 1.	98.34
PRK05122	399	major facilitator superfamily transporter; Provisi	98.34
PRK10489	417	enterobactin exporter EntS; Provisional	98.34
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.33
KOG1330	493	consensus Sugar transporter/spinster transmembrane	98.33
KOG0254	513	consensus Predicted transporter (major facilitator	98.33
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.33
KOG2615	451	consensus Permease of the major facilitator superf	98.32
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.3
TIGR00900	365	2A0121 H+ Antiporter protein.	98.3
PRK15011	393	sugar efflux transporter B; Provisional	98.28
PRK03699	394	putative transporter; Provisional	98.25
PRK12382	392	putative transporter; Provisional	98.24
PRK03633	381	putative MFS family transporter protein; Provision	98.24
TIGR00901	356	2A0125 AmpG-related permease.	98.22
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.22
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.2
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.2
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.19
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.17
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.15
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.13
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	98.12
PF12832	77	MFS_1_like: MFS_1 like family	98.11
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.1
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.09
PRK11902	402	ampG muropeptide transporter; Reviewed	98.09
PRK03545	390	putative arabinose transporter; Provisional	98.06
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.05
PRK11010	491	ampG muropeptide transporter; Validated	98.05
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	98.05
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.03
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.02
KOG2532	466	consensus Permease of the major facilitator superf	98.01
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.0
TIGR00805	633	oat sodium-independent organic anion transporter.	97.98
PRK10504	471	putative transporter; Provisional	97.97
PRK09528	420	lacY galactoside permease; Reviewed	97.97
PLN00028	476	nitrate transmembrane transporter; Provisional	97.97
PTZ00207	591	hypothetical protein; Provisional	97.94
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.93
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.87
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.86
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.8
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.8
PRK09874	408	drug efflux system protein MdtG; Provisional	97.8
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	97.79
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.79
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.78
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.74
PRK11010	491	ampG muropeptide transporter; Validated	97.72
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.72
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	97.7
TIGR00901	356	2A0125 AmpG-related permease.	97.68
PRK15011	393	sugar efflux transporter B; Provisional	97.67
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.66
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.65
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.63
PRK09528	420	lacY galactoside permease; Reviewed	97.63
PRK11043	401	putative transporter; Provisional	97.6
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	97.6
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.59
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.57
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.51
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.5
KOG2532	466	consensus Permease of the major facilitator superf	97.5
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.49
PRK10091	382	MFS transport protein AraJ; Provisional	97.47
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	97.41
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.34
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.27
PRK09848	448	glucuronide transporter; Provisional	97.21
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.19
PRK09669	444	putative symporter YagG; Provisional	97.18
PRK10133	438	L-fucose transporter; Provisional	97.17
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	97.17
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	97.16
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.16
PRK10429	473	melibiose:sodium symporter; Provisional	97.15
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.11
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.08
PRK11462	460	putative transporter; Provisional	97.03
PF13347	428	MFS_2: MFS/sugar transport protein	97.01
PF13347	428	MFS_2: MFS/sugar transport protein	96.95
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	96.91
KOG2533	495	consensus Permease of the major facilitator superf	96.91
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	96.86
PRK10213	394	nepI ribonucleoside transporter; Reviewed	96.85
PRK09669	444	putative symporter YagG; Provisional	96.84
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	96.82
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	96.82
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.8
PRK11652	394	emrD multidrug resistance protein D; Provisional	96.75
PRK11462	460	putative transporter; Provisional	96.73
PRK11646	400	multidrug resistance protein MdtH; Provisional	96.73
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	96.69
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	96.61
PRK11195	393	lysophospholipid transporter LplT; Provisional	96.56
PRK10429	473	melibiose:sodium symporter; Provisional	96.56
PRK11902	402	ampG muropeptide transporter; Reviewed	96.54
KOG3764	464	consensus Vesicular amine transporter [Intracellul	96.44
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	96.38
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	96.34
KOG2816	463	consensus Predicted transporter ADD1 (major facili	96.31
PRK10054	395	putative transporter; Provisional	95.94
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	95.76
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	95.73
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	95.6
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	95.6
PRK09848	448	glucuronide transporter; Provisional	95.55
COG2211	467	MelB Na+/melibiose symporter and related transport	95.49
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	95.42
TIGR00788	468	fbt folate/biopterin transporter. The only functio	95.21
KOG2533	495	consensus Permease of the major facilitator superf	95.15
KOG2563	480	consensus Permease of the major facilitator superf	94.97
COG2211	467	MelB Na+/melibiose symporter and related transport	94.65
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	94.58
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	94.08
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	93.59
PRK15403	413	multidrug efflux system protein MdtM; Provisional	93.55
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	93.35
COG0477	338	ProP Permeases of the major facilitator superfamil	93.16
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	91.2
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	91.06
TIGR00788	468	fbt folate/biopterin transporter. The only functio	90.76
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	89.55
KOG1330	493	consensus Sugar transporter/spinster transmembrane	88.66
KOG3762	618	consensus Predicted transporter [General function	88.46
KOG2325	488	consensus Predicted transporter/transmembrane prot	88.33
TIGR00805	633	oat sodium-independent organic anion transporter.	86.15
PRK09584	500	tppB putative tripeptide transporter permease; Rev	85.68
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	85.09
PRK10207	489	dipeptide/tripeptide permease B; Provisional	84.73
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	84.48
KOG0637	498	consensus Sucrose transporter and related proteins	80.12

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.85  E-value=9.8e-21  Score=147.52  Aligned_cols=135  Identities=33%  Similarity=0.445  Sum_probs=118.4

Q ss_pred             hhhhhhchHHHHHhHHHHHhhhCCCCC-cchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-------------
Q 036778            2 LMQTLGGSTAIAYYASSIFDVASNKLS-TKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-------------   67 (145)
Q Consensus         2 ~~~~~~g~~~~~~~~~~i~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-------------   67 (145)
                      +.||++|++++.+|...++++.|++.+ ..+.+...+       ++.++.++.+.+++||.|||+++             
T Consensus       279 ~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g-------~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~  351 (485)
T KOG0569|consen  279 FAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIG-------IVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLL  351 (485)
T ss_pred             HHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            679999999999999999999999621 124555555       99999999999999999999998             


Q ss_pred             -----------------------HHHHHHhhccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh-c
Q 036778           68 -----------------------LGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE-W  123 (145)
Q Consensus        68 -----------------------~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  123 (145)
                                             +.+...+++|.+|++|.+.+|++|++.|+.+.++....+|+++++....+|.+.+ +
T Consensus       352 ~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~  431 (485)
T KOG0569|consen  352 MSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVI  431 (485)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                                   3455667889999999999999999999999999999999999999999999887 4


Q ss_pred             cC---------------------CCCCCCCHHHHHHHHhhc
Q 036778          124 ST---------------------IETKGRTLEEIQRSIIKF  143 (145)
Q Consensus       124 ~~---------------------pet~~~~l~~i~~~~~~~  143 (145)
                      +.                     ||||+|+.+|+.+.++++
T Consensus       432 g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~  472 (485)
T KOG0569|consen  432 GPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR  472 (485)
T ss_pred             cchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence            42                     999999999999988765

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.77  E-value=2.3e-18  Score=136.23  Aligned_cols=135  Identities=30%  Similarity=0.423  Sum_probs=116.3

Q ss_pred             ChhhhhhchHHHHHhHHHHHhhhCCCCCc-chhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH------------
Q 036778            1 MLMQTLGGSTAIAYYASSIFDVASNKLST-KFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL------------   67 (145)
Q Consensus         1 ~~~~~~~g~~~~~~~~~~i~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~------------   67 (145)
                      +.|||++|++.+.+|.+.+++..|.+ +. ...+.+.+       +.+++++.++.+++||+|||+++            
T Consensus       303 ~~fqq~tG~~~~~~Y~~~if~~~g~~-~~~~~~~~~~~-------~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~  374 (513)
T KOG0254|consen  303 QLFQQLTGINYVFYYSTTIFKSAGLK-SDTFLASIILG-------VVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLV  374 (513)
T ss_pred             HHHHHHhCCceEEeehHHHHHhcCCC-CchHHHHHHHH-------HHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHH
Confidence            46899999999999999999999997 44 45555555       88899999999999999999998            


Q ss_pred             ---------------------------HHHHHHhhccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036778           68 ---------------------------LGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFM  120 (145)
Q Consensus        68 ---------------------------~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~  120 (145)
                                                 .++...++.+.++++|.+.+|++|.+.|+++.+++...+++.+++....++..
T Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~  454 (513)
T KOG0254|consen  375 ILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFI  454 (513)
T ss_pred             HHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                                       34445667788899999999999999999999999999999999998888877


Q ss_pred             hhc-c-C----------------------CCCCCCCHHHHHHHHhhc
Q 036778          121 IEW-S-T----------------------IETKGRTLEEIQRSIIKF  143 (145)
Q Consensus       121 ~~~-~-~----------------------pet~~~~l~~i~~~~~~~  143 (145)
                      ..+ + .                      ||||++++||+++.++++
T Consensus       455 ~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~  501 (513)
T KOG0254|consen  455 TEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEG  501 (513)
T ss_pred             HHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence            663 2 1                      999999999999988765

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.63  E-value=3.9e-18  Score=132.10  Aligned_cols=131  Identities=28%  Similarity=0.425  Sum_probs=104.1

Q ss_pred             hhhhhhchHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH--------------
Q 036778            2 LMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL--------------   67 (145)
Q Consensus         2 ~~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------------   67 (145)
                      ++++.+|.+.+.+|.|.+.++.+.+ +....+.+.+       +...++.+++.+++||+|||+++              
T Consensus       262 ~~~~~~g~~~~~~~~~~i~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~  333 (451)
T PF00083_consen  262 FFQQFSGINFIFYYSPSIFENAGIS-NSFLATLILG-------LVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLIL  333 (451)
T ss_pred             ccccccccccccccccccccccccc-cccccccccc-------ccccccccccccccccccccccccccccccccccccc
Confidence            4677889889999999999998886 4434445555       77788888888999999999887              


Q ss_pred             ----------------------HHHHHHhhccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh-cc
Q 036778           68 ----------------------LGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE-WS  124 (145)
Q Consensus        68 ----------------------~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  124 (145)
                                            .++...++.+.++..+.+.+|+||++.|+++.+++...+++++++.+.+.|++.. .+
T Consensus       334 ~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~  413 (451)
T PF00083_consen  334 GIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLG  413 (451)
T ss_pred             ccccccccccccccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                  0111222345557788899999999999999999999999999998888877765 22


Q ss_pred             -C---------------------CCCCCCCHHHHHHHH
Q 036778          125 -T---------------------IETKGRTLEEIQRSI  140 (145)
Q Consensus       125 -~---------------------pet~~~~l~~i~~~~  140 (145)
                       .                     ||||++++||++++|
T Consensus       414 ~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f  451 (451)
T PF00083_consen  414 GWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF  451 (451)
T ss_pred             ccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence             1                     999999999999875

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.61  E-value=1.8e-14  Score=112.32  Aligned_cols=135  Identities=26%  Similarity=0.369  Sum_probs=99.8

Q ss_pred             hhhhhchHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------H---
Q 036778            3 MQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------L---   68 (145)
Q Consensus         3 ~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------~---   68 (145)
                      ++|..+.+.+.+|.|.+.++.|.+  ........    ....+..+++.+++++++||+|||+++           .   
T Consensus       281 ~~~~~~~~~~~~~~p~i~~~~g~~--~~~~~~~~----~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~  354 (479)
T PRK10077        281 FQQFVGINVVLYYAPEIFKTLGAS--TDIALLQT----IIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG  354 (479)
T ss_pred             HHHHhChhHHHHHHHHHHHHcCCC--CchHHHHH----HHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHH
Confidence            456667777788899999988885  22111111    133477888999999999999999987           0   


Q ss_pred             -----------------HHHHHhhccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh-------h--
Q 036778           69 -----------------GYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI-------E--  122 (145)
Q Consensus        69 -----------------~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--  122 (145)
                                       .+.+.++.+..+..+.+++|.+|++.|++++++....++++.++++.+.|.+.       .  
T Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~  434 (479)
T PRK10077        355 TAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH  434 (479)
T ss_pred             HHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc
Confidence                             00011122233667789999999999999999999999999999988888655       1  


Q ss_pred             ccC--------------------CCCCCCCHHHHHHHHhhc
Q 036778          123 WST--------------------IETKGRTLEEIQRSIIKF  143 (145)
Q Consensus       123 ~~~--------------------pet~~~~l~~i~~~~~~~  143 (145)
                      |..                    ||||++++||+++.+++.
T Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  475 (479)
T PRK10077        435 NGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPE  475 (479)
T ss_pred             CccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhc
Confidence            211                    999999999999988765

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.57  E-value=1.4e-14  Score=114.21  Aligned_cols=127  Identities=19%  Similarity=0.242  Sum_probs=88.3

Q ss_pred             HHHHhHHHHHhhhCCCCCcc--hh----hhheeh-hhhhhhhhhhhHHHHHHHHHhhhCChHHH-------------HH-
Q 036778           11 AIAYYASSIFDVASNKLSTK--FG----NFRISI-LRHIQSLFQVPVVGSSVLLADKFGRRPLL-------------LG-   69 (145)
Q Consensus        11 ~~~~~~~~i~~~~g~~~~~~--~~----~~~~~~-~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-------------~~-   69 (145)
                      .+..+.|+++++.|.+ ...  ..    ...... ......++..++.+++++++||+|||+++             .. 
T Consensus       306 ~~~~~~p~i~~~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~  384 (502)
T TIGR00887       306 GVNLNQKVILSAIGYS-PPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGF  384 (502)
T ss_pred             ccccccHHHHHHHcCC-CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHH
Confidence            4445678888888885 221  00    000000 01122355667888999999999999987             00 


Q ss_pred             ----------------HHHHhhccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhc----------
Q 036778           70 ----------------YTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEW----------  123 (145)
Q Consensus        70 ----------------~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  123 (145)
                                      ....++.+..+..+.+.+|++|++.|+++.++.+..+++++++++.+.|++.+-          
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  464 (502)
T TIGR00887       385 AYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTG  464 (502)
T ss_pred             HHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccc
Confidence                            000112334466788899999999999999999999999999999999877651          


Q ss_pred             -cC---------------------CCCCCCCHHHHHH
Q 036778          124 -ST---------------------IETKGRTLEEIQR  138 (145)
Q Consensus       124 -~~---------------------pet~~~~l~~i~~  138 (145)
                       ..                     |||+++++||+|+
T Consensus       465 ~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~~leei~~  501 (502)
T TIGR00887       465 IWMGHVLEIFALFMFLGILFTLLIPETKGKSLEELSG  501 (502)
T ss_pred             ccchHHHHHHHHHHHHHHHHheEeccCCCCCHHhhhC
Confidence             11                     9999999999875

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.20  E-value=2.2e-10  Score=88.23  Aligned_cols=125  Identities=32%  Similarity=0.462  Sum_probs=90.0

Q ss_pred             hhhchHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------HHHH--
Q 036778            5 TLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------LGYT--   71 (145)
Q Consensus         5 ~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------~~~~--   71 (145)
                      +..+.+.+.+|.|.+.++.|.+  .......    .....++.+++.++.+++.||+|||+.+           ....  
T Consensus       296 ~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~----~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  369 (481)
T TIGR00879       296 QFTGINAIMYYSPTIFENAGVS--TDHAFLV----SIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGIL  369 (481)
T ss_pred             HHhCCeehHHHHHHHHHHcCCC--chHHHHH----HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            3444556677889888888885  3322222    2255588889999999999999999987           0000  


Q ss_pred             ------------------------HHhhccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh---cc
Q 036778           72 ------------------------ITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE---WS  124 (145)
Q Consensus        72 ------------------------~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~  124 (145)
                                              ..++.+..+..+.+.+|.+|++.|+++.++.....++++++++.+.+.+.+   |.
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~  449 (481)
T TIGR00879       370 GASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVG  449 (481)
T ss_pred             hhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence                                    011122235556777999999999999999999999999999998887764   33


Q ss_pred             C--------------------CCCCCCCHHH
Q 036778          125 T--------------------IETKGRTLEE  135 (145)
Q Consensus       125 ~--------------------pet~~~~l~~  135 (145)
                      .                    ||+++++++|
T Consensus       450 ~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~  480 (481)
T TIGR00879       450 GVFIFFGGLNVLGLIFVYFFLPETKGRTLEE  480 (481)
T ss_pred             ceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence            2                    9998887765

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.19  E-value=2.4e-11  Score=92.03  Aligned_cols=72  Identities=10%  Similarity=0.182  Sum_probs=60.3

Q ss_pred             hhhhhHHHHHHHHHhhhCChHHH---------------------------HHHHHHhhccccchhhhhhcccCCcchhhh
Q 036778           45 LFQVPVVGSSVLLADKFGRRPLL---------------------------LGYTITFSKGMVRLPNLIMFETFSINIKGS   97 (145)
Q Consensus        45 ~~~~~~~~~~~~l~Dr~grr~~~---------------------------~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~   97 (145)
                      +..++|.++.++++||+|||+.+                           +...++-+ +...+.|.|.+|++|++.|++
T Consensus       392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafis-g~fqvaYvYtPEVyPTavRat  470 (528)
T KOG0253|consen  392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFIS-GAFQVAYVYTPEVYPTAVRAT  470 (528)
T ss_pred             HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHh-chheEEEEecCcccchhhhhc
Confidence            88999999999999999999998                           11222222 223567899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 036778           98 AGSLVTFLHNNSNSLVAYAF  117 (145)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~  117 (145)
                      |.|.+..++++|+++.|.+.
T Consensus       471 gvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  471 GVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             chhhhhhHHhhhhhhhhHHH
Confidence            99999999999999999776

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.15  E-value=1.3e-10  Score=95.74  Aligned_cols=83  Identities=19%  Similarity=0.237  Sum_probs=64.0

Q ss_pred             hhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HHHHHH---hhccccchhhhhhcccCCcc
Q 036778           40 RHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LGYTIT---FSKGMVRLPNLIMFETFSIN   93 (145)
Q Consensus        40 ~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~~~~~---~~~~~~~~~~~~~~e~~p~~   93 (145)
                      +.+..++.+++.+++++++||+|||+++                       ....+.   +..+..+..+.+++|++|++
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~  680 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSD  680 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            3455588899999999999999999988                       000011   11122345668899999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           94 IKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        94 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      .|++++|+..+.+++|+++++.+.+++..
T Consensus       681 ~Rgta~Gi~~~~~rlGaiigp~i~g~L~~  709 (742)
T TIGR01299       681 KRATAFGFLNALCKAAAVLGILIFGSFVG  709 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988876544

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.15  E-value=1.7e-11  Score=94.71  Aligned_cols=132  Identities=19%  Similarity=0.162  Sum_probs=91.8

Q ss_pred             HHHHHhHHHHHhhhCCCCCcchh--hhheehhhhhh-hhhhhhHHHHHHHHHhhhCChHHH-------------------
Q 036778           10 TAIAYYASSIFDVASNKLSTKFG--NFRISILRHIQ-SLFQVPVVGSSVLLADKFGRRPLL-------------------   67 (145)
Q Consensus        10 ~~~~~~~~~i~~~~g~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~l~Dr~grr~~~-------------------   67 (145)
                      +....+...++++.|..++.+..  ....+..+.+. .+..++|.++..+++|++|||++.                   
T Consensus       321 y~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~  400 (538)
T KOG0252|consen  321 YGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYN  400 (538)
T ss_pred             hccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcc
Confidence            44555677788877775333211  00111111111 244556888888999999999997                   


Q ss_pred             ------------HHHHHHhhccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccC----------
Q 036778           68 ------------LGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWST----------  125 (145)
Q Consensus        68 ------------~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  125 (145)
                                  .+..++...|....++.+.+|.||+++|+++-|++-+.+-+|++++...+.++.+-..          
T Consensus       401 ~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~  480 (538)
T KOG0252|consen  401 QLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVF  480 (538)
T ss_pred             cccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHH
Confidence                        1222233456666778899999999999999999999999999999988877765111          


Q ss_pred             -----------------CCCCCCCHHHHHHHHh
Q 036778          126 -----------------IETKGRTLEEIQRSII  141 (145)
Q Consensus       126 -----------------pet~~~~l~~i~~~~~  141 (145)
                                       |||+++++||+++..+
T Consensus       481 ~i~~~~~~~gi~~T~l~pEtk~~~leei~~e~~  513 (538)
T KOG0252|consen  481 IILAGCMLLGILFTLLIPETKGKSLEEISNEEE  513 (538)
T ss_pred             HHHHHHHHHhHheeEEeecccccCHHHhcChhh
Confidence                             9999999999976543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.14  E-value=6.7e-10  Score=84.90  Aligned_cols=113  Identities=12%  Similarity=-0.104  Sum_probs=82.6

Q ss_pred             hchHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-------------------
Q 036778            7 GGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-------------------   67 (145)
Q Consensus         7 ~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-------------------   67 (145)
                      .+........|.+.+++|.+  ..+..++.+    .+.++..++.+..|+++||+|||+++                   
T Consensus         5 ~~~~~~~~~lp~i~~~~~~s--~~~~g~~~s----~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~   78 (368)
T TIGR00903         5 AIWVTFSPVLSLVAEDIDVS--KEELGLLAI----TYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFN   78 (368)
T ss_pred             HHHHHHHhhHHHHHHHhCcC--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhcc
Confidence            34456667788999999994  544444444    78889999999999999999999987                   


Q ss_pred             ----HHHHHHhhcccc--chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh---ccC
Q 036778           68 ----LGYTITFSKGMV--RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE---WST  125 (145)
Q Consensus        68 ----~~~~~~~~~~~~--~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  125 (145)
                          ...++..+.+.+  .......+|.+|++.|++++++......+|..+++.+.+++..   |+.
T Consensus        79 ~~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~  145 (368)
T TIGR00903        79 YEWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQL  145 (368)
T ss_pred             HHHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence                011111122211  2234556899999999999999999999999999888887764   665

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.13  E-value=2.3e-10  Score=90.25  Aligned_cols=110  Identities=17%  Similarity=0.127  Sum_probs=72.6

Q ss_pred             hchHHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHHH-----H---H--H--H
Q 036778            7 GGSTAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLLG-----Y---T--I--T   73 (145)
Q Consensus         7 ~g~~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~~-----~---~--~--~   73 (145)
                      .+.+.+..|.|.++++ .|.+  .......    .....++..++.++.++++||+|||+.+..     .   .  .  .
T Consensus       264 ~~~~~~~~~~p~~l~~~~g~s--~~~~~~~----~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~  337 (490)
T PRK10642        264 VTYYMLLTYMPSYLSHNLHYS--EDHGVLI----IIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI  337 (490)
T ss_pred             HHHHHHHHHHHHHHHHhcCCC--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666788888864 6774  3222222    224557788888999999999999998700     0   0  0  0


Q ss_pred             hh--------------c---cccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           74 FS--------------K---GMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        74 ~~--------------~---~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      ..              .   ...+....+.+|++|++.|++++++.+..+..++.+.+.+.+++.+
T Consensus       338 ~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~  403 (490)
T PRK10642        338 NSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVE  403 (490)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00              0   0012234567899999999999999877777777788888777653

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.06  E-value=6.5e-10  Score=83.50  Aligned_cols=112  Identities=13%  Similarity=0.029  Sum_probs=81.5

Q ss_pred             hhhchHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------
Q 036778            5 TLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------   67 (145)
Q Consensus         5 ~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------   67 (145)
                      +.......+...|.+.+++|.+  .....++    .+.+.+...++.++.|+++||+|||+.+                 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~g~s--~~~~~~~----~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~   79 (399)
T TIGR00893         6 NYLDRANLSFAAPMLQEDLGLS--AAQYGYV----FSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA   79 (399)
T ss_pred             HHHHHHhhhHhHHHHHHhhCCC--hhhHHHH----HHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH
Confidence            3444466677788888889984  4443333    3377899999999999999999999987                 


Q ss_pred             ------HHHHHHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 ------LGYTITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 ------~~~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                            ....+..+.+   ..+....+.+|.+|++.|++..++......++..+++.+...+.+
T Consensus        80 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  143 (399)
T TIGR00893        80 GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI  143 (399)
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHH
Confidence                  1111111111   224456789999999999999999999999998888887776543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.05  E-value=7.9e-10  Score=84.43  Aligned_cols=113  Identities=12%  Similarity=0.009  Sum_probs=81.7

Q ss_pred             hhhhhchHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH---------------
Q 036778            3 MQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL---------------   67 (145)
Q Consensus         3 ~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~---------------   67 (145)
                      +++..+.+....+.|.+.+++|.+  .....+..    +.+.+...++.++.|+++||+|||+.+               
T Consensus        13 ~~~~~~~~~~~~~lp~~~~~~~~s--~~~~~~~~----~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~   86 (392)
T PRK10473         13 LLYPAGIDMYLVGLPRIAADLNAS--EAQLHIAF----SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS   86 (392)
T ss_pred             HHHHHHHHHHhhhHHHHHHHhCCC--HHHHHHHH----HHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            455667677777889999999884  44433333    367788888999999999999999998               


Q ss_pred             --------HHHHHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           68 --------LGYTITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        68 --------~~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                              ....+..+.+.+   +..+.+..|.+|++.|++..++.+....++..+++.+...+.
T Consensus        87 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~  151 (392)
T PRK10473         87 LAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM  151 (392)
T ss_pred             HhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    111112222221   345678899999999999999999888888777777766554

>TIGR00898 2A0119 cation transport protein

Probab=99.03  E-value=5.9e-10  Score=87.79  Aligned_cols=90  Identities=21%  Similarity=0.292  Sum_probs=66.8

Q ss_pred             hhhhhHHHHHHHHHhhhCChHHH---------HH------------------HHHHh-hccccchhhhhhcccCCcchhh
Q 036778           45 LFQVPVVGSSVLLADKFGRRPLL---------LG------------------YTITF-SKGMVRLPNLIMFETFSINIKG   96 (145)
Q Consensus        45 ~~~~~~~~~~~~l~Dr~grr~~~---------~~------------------~~~~~-~~~~~~~~~~~~~e~~p~~~R~   96 (145)
                      +..+++.++.+++.||+|||+.+         ..                  ....+ .....+..+.+.+|++|++.|+
T Consensus       366 ~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~  445 (505)
T TIGR00898       366 LVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRN  445 (505)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHh
Confidence            77888999999999999999988         00                  00000 0111244567889999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhh-ccC--------------------CCCCCCCHHH
Q 036778           97 SAGSLVTFLHNNSNSLVAYAFNFMIE-WST--------------------IETKGRTLEE  135 (145)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------------pet~~~~l~~  135 (145)
                      +++|+..+.+.+++++++.+.. +.. +..                    |||++++++|
T Consensus       446 ~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~~~l~~  504 (505)
T TIGR00898       446 LGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE  504 (505)
T ss_pred             hhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHcCcCCCCCCCCC
Confidence            9999999999999999988876 322 110                    9999988765

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.03  E-value=8e-10  Score=86.28  Aligned_cols=110  Identities=15%  Similarity=0.131  Sum_probs=81.6

Q ss_pred             hchHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-------------------
Q 036778            7 GGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-------------------   67 (145)
Q Consensus         7 ~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-------------------   67 (145)
                      .+........|.+.+++|.+  .....++    .+.+.++..++.++.+++.||+|||+.+                   
T Consensus        16 ~~~~~~~~~~p~~~~~~g~s--~~~~~~~----~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~   89 (485)
T TIGR00711        16 LDSTIVNVAIPTIAGDLGSS--LSQVQWV----ITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPN   89 (485)
T ss_pred             HHHHHHHHHHHHHHHhcCCC--hhhhhHH----HHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCC
Confidence            34455666788899999884  4433333    3377899999999999999999999987                   


Q ss_pred             ----HHHHHHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 ----LGYTITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 ----~~~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                          ....+..+.+   ..+....++.|.+|++.|+++.++......++..+++.+.+++.+
T Consensus        90 ~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  151 (485)
T TIGR00711        90 LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE  151 (485)
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence                1111122222   124556789999999999999999998888988888888777754

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.02  E-value=4.3e-09  Score=81.36  Aligned_cols=107  Identities=11%  Similarity=0.005  Sum_probs=77.1

Q ss_pred             hHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH---------------------
Q 036778            9 STAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL---------------------   67 (145)
Q Consensus         9 ~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~---------------------   67 (145)
                      -..+.+..|.+.+++|.  +.....++.+    .+.++..++.++.+++.||+|||+.+                     
T Consensus        24 ~~~~~~~~~~l~~~~~~--s~~~~g~~~s----~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~   97 (412)
T TIGR02332        24 RINIGFAGLTMGKDLGL--SATMFGLAAT----LFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPE   97 (412)
T ss_pred             hhhHHHHHHhhHhhcCC--CHHHHHHHHH----HHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            34455566777778888  4444444444    78889999999999999999999998                     


Q ss_pred             --HHHHHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           68 --LGYTITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        68 --~~~~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                        ...++..+.+.   .+....+++|.+|++.|++.+++......+|..+++.+..++.
T Consensus        98 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~  156 (412)
T TIGR02332        98 SLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYIL  156 (412)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              11122222222   2444567899999999999999999888888888877766553

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.00  E-value=1.9e-09  Score=82.97  Aligned_cols=107  Identities=22%  Similarity=0.182  Sum_probs=77.4

Q ss_pred             HHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----------------------
Q 036778           10 TAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----------------------   67 (145)
Q Consensus        10 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------------------   67 (145)
                      ....+..|.+.+++|.+  +.+..+..+    .+.++..++.++.|+++||+|||+++                      
T Consensus        35 ~~~~~~~~~i~~~~~~s--~~~~~~~~~----~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~  108 (426)
T PRK12307         35 MLIFYIMYLIKADLGLT--DMEGAFLAT----AAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIM  108 (426)
T ss_pred             HHHHHHHHHHHHHhCCC--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            44455667777889984  444443333    67788999999999999999999998                      


Q ss_pred             -HHHHHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 -LGYTITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 -~~~~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                       ....+..+.+.   .+....+..|.+|++.|+++.++......+|..+++.+.+.+.+
T Consensus       109 l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~  167 (426)
T PRK12307        109 LTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAE  167 (426)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcc
Confidence             11112222221   23455788999999999999999998888888888877766544

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.97  E-value=6.8e-09  Score=85.67  Aligned_cols=100  Identities=16%  Similarity=-0.004  Sum_probs=72.2

Q ss_pred             HHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------
Q 036778           11 AIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------   67 (145)
Q Consensus        11 ~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------   67 (145)
                      .+....|.+.++++.+  .....++    .+++.++.+++.+++|+++||+|||+++                       
T Consensus       185 ~is~ilp~i~~~~gls--~~~~g~l----~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~l  258 (742)
T TIGR01299       185 VVGFVLPSAEKDLCIP--DSGKGML----GLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFF  258 (742)
T ss_pred             HHHHHHHHHHHHhCCC--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            3455667777788884  4433333    3477899999999999999999999988                       


Q ss_pred             HHHHHHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 036778           68 LGYTITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYA  116 (145)
Q Consensus        68 ~~~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~  116 (145)
                      .+..+..+.+   ..+..+.+++|.+|.+.|++.+++..+...+|..+++.+
T Consensus       259 lv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~l  310 (742)
T TIGR01299       259 LFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAM  310 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111222222   225677899999999999999999888777777666643

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.97  E-value=5.3e-09  Score=82.27  Aligned_cols=98  Identities=22%  Similarity=0.186  Sum_probs=72.4

Q ss_pred             HHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----------------------------
Q 036778           16 ASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----------------------------   67 (145)
Q Consensus        16 ~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------------------------   67 (145)
                      ..++.+..|.+++......+.+..++++.+++++|++..++++||+|||+.+                            
T Consensus        42 n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~  121 (485)
T KOG0569|consen   42 NETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLIL  121 (485)
T ss_pred             HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3445566675546666677778889999999999999999999999999777                            


Q ss_pred             HHHHHHhhcccc-chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHH
Q 036778           68 LGYTITFSKGMV-RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLV  113 (145)
Q Consensus        68 ~~~~~~~~~~~~-~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~  113 (145)
                      ..++...+.+.. .....|+.|+.|.+.||....+......+|..++
T Consensus       122 GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~  168 (485)
T KOG0569|consen  122 GRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLG  168 (485)
T ss_pred             HHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHH
Confidence            111111111111 3455899999999999999999887777776666

>PRK03545 putative arabinose transporter; Provisional

Probab=98.96  E-value=5.5e-09  Score=79.87  Aligned_cols=102  Identities=17%  Similarity=0.031  Sum_probs=73.3

Q ss_pred             hHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HHHH
Q 036778           15 YASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LGYT   71 (145)
Q Consensus        15 ~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~~~   71 (145)
                      ..|.+.+++|.+  ..+..+..+    .+.+...++.+..++++||+|||+++                       ...+
T Consensus        31 ~~~~l~~~~~~s--~~~~g~~~~----~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  104 (390)
T PRK03545         31 LLSDIAQSFHMQ--TAQVGLMLT----IYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISR  104 (390)
T ss_pred             chHHHHhHcCCC--HHHHHHHHH----HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            457777888884  544444443    66778888889999999999999998                       1111


Q ss_pred             HHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           72 ITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        72 ~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      +..+.+   ..+....+++|.+|.+.|++++++......++..+++.+...+.+
T Consensus       105 ~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~  158 (390)
T PRK03545        105 IGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ  158 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            111111   113445788999999999999999998888888888877766544

>TIGR00895 2A0115 benzoate transport

Probab=98.96  E-value=4.4e-09  Score=79.51  Aligned_cols=107  Identities=17%  Similarity=0.080  Sum_probs=78.6

Q ss_pred             HHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----------------------
Q 036778           10 TAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----------------------   67 (145)
Q Consensus        10 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------------------   67 (145)
                      ....++.|.+.+++|.+  .....++.    +.+.++..++.++.++++||+|||+.+                      
T Consensus        34 ~~~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (398)
T TIGR00895        34 AAMGFAAPAISAEWGLD--PVQLGFLF----SAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQ  107 (398)
T ss_pred             HHHHhhHHHHhhccCCC--HHHHHHHH----HHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHH
Confidence            44556778888888884  44333333    366788899999999999999999988                      


Q ss_pred             -HHHHHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 -LGYTITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 -~~~~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                       .......+.+.   .+....+.+|.+|.+.|++..++......++..+++.+.+++..
T Consensus       108 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  166 (398)
T TIGR00895       108 LLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP  166 (398)
T ss_pred             HHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh
Confidence             11112222222   24556789999999999999999999899998888888877654

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.94  E-value=5.8e-09  Score=78.89  Aligned_cols=107  Identities=12%  Similarity=0.065  Sum_probs=77.2

Q ss_pred             HHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----------------------
Q 036778           10 TAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----------------------   67 (145)
Q Consensus        10 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------------------   67 (145)
                      .......|.+.+++|.+  ..+..+..+    .+.++..++.++.|+++||+|||+.+                      
T Consensus        22 ~~~~~~~p~~~~~~g~s--~~~~g~~~~----~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~   95 (385)
T TIGR00710        22 DMYLPAFPEIAADLSTP--ASIVQMTLT----LYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIET   95 (385)
T ss_pred             HHhcccHHHHHHHhCCC--HHHHHHHHH----HHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence            34444567777888884  444444333    77788999999999999999999988                      


Q ss_pred             -HHHHHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 -LGYTITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 -~~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                       ....+..+.+.+   +....+..|.+|++.|++..++......++..+++.+.+++.+
T Consensus        96 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  154 (385)
T TIGR00710        96 LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILV  154 (385)
T ss_pred             HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             111122222222   3445788999999999999999999888888888887776654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.93  E-value=9.9e-09  Score=77.92  Aligned_cols=106  Identities=13%  Similarity=0.090  Sum_probs=75.4

Q ss_pred             HHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----------------------
Q 036778           10 TAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----------------------   67 (145)
Q Consensus        10 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------------------   67 (145)
                      .......|.+.+++|.+  .....++.    +.+.++..++.++.|+++||+|||+.+                      
T Consensus        29 ~~~~~~~~~l~~~~~~s--~~~~g~~~----~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  102 (405)
T TIGR00891        29 FLVALVLAEVAGEFGLT--TVDAASLI----SAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYIT  102 (405)
T ss_pred             HHHHHHHHHHHHHhCCC--hhhHHHHH----HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            34455667777788884  44333333    377789999999999999999999998                      


Q ss_pred             -HHHHHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           68 -LGYTITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        68 -~~~~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                       ....+..+.+.   .+....++.|.+|++.|++..++......+|..+++.+...+.
T Consensus       103 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~  160 (405)
T TIGR00891       103 MFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVV  160 (405)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11112222221   2344578899999999999999999888888888777766554

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.93  E-value=7.4e-09  Score=81.90  Aligned_cols=81  Identities=17%  Similarity=0.062  Sum_probs=60.3

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------H------------------HHHHHhhcccc---chhhhh
Q 036778           38 ILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------L------------------GYTITFSKGMV---RLPNLI   85 (145)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------~------------------~~~~~~~~~~~---~~~~~~   85 (145)
                      ++++...++..++.++.+++.||+|||+.+           .                  ..++..+.+.+   +....+
T Consensus        60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~  139 (502)
T TIGR00887        60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAII  139 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            344578899999999999999999999987           0                  00111111122   556689


Q ss_pred             hcccCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036778           86 MFETFSINIKGSAGSLVTFLHNNSNSLVAYAFN  118 (145)
Q Consensus        86 ~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~  118 (145)
                      .+|.+|++.|++++++......+|..+++.+..
T Consensus       140 ~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~  172 (502)
T TIGR00887       140 TSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL  172 (502)
T ss_pred             HHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998888887766665544

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.91  E-value=8.2e-09  Score=77.16  Aligned_cols=107  Identities=10%  Similarity=-0.015  Sum_probs=75.6

Q ss_pred             HHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHH-----------H---------
Q 036778           10 TAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLL-----------G---------   69 (145)
Q Consensus        10 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~-----------~---------   69 (145)
                      .......|.+..+.+.  +..+..++    .+.+.+...++.++.|+++||+|||+.+.           .         
T Consensus        16 ~~~~~~~~~~~~~~~~--s~~~~g~~----~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~   89 (365)
T TIGR00900        16 AITQVALPLYVLAGTG--SASVLSLA----ALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGG   89 (365)
T ss_pred             HHHHHHHHHHHHHhhc--cHHHHHHH----HHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            4444556777777777  44444433    34777899999999999999999999980           0         


Q ss_pred             --------HHHHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           70 --------YTITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        70 --------~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                              ..+..+.+   ..+....+.+|.+|++.|++..++......++..+++.+..++.+
T Consensus        90 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  153 (365)
T TIGR00900        90 LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA  153 (365)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence                    00000111   113445788999999999999999999998988888877766654

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.89  E-value=1.8e-08  Score=77.54  Aligned_cols=102  Identities=8%  Similarity=-0.052  Sum_probs=75.1

Q ss_pred             hHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HHHH
Q 036778           15 YASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LGYT   71 (145)
Q Consensus        15 ~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~~~   71 (145)
                      ..|.+.+++|.+  +.+.....+    .+.+...++.++.+.++||+|||+.+                       ...+
T Consensus        42 ~l~~~~~~~g~s--~~~~g~~~~----~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r  115 (394)
T PRK10213         42 LLTPMAQDLGIS--EGVAGQSVT----VTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGR  115 (394)
T ss_pred             hHHHHHHHcCCC--HHHHHHHHH----HHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHH
Confidence            456677888884  444443333    66688889999999999999999998                       1111


Q ss_pred             HHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           72 ITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        72 ~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      +..+.+.   .+....+++|.+|++.|+++.++......++..+++.+.+++.+
T Consensus       116 ~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~  169 (394)
T PRK10213        116 ACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE  169 (394)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2222221   24556788999999999999999998888888888888887765

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.88  E-value=1.6e-08  Score=79.61  Aligned_cols=107  Identities=12%  Similarity=-0.051  Sum_probs=72.0

Q ss_pred             chHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH--------------------
Q 036778            8 GSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL--------------------   67 (145)
Q Consensus         8 g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------------------   67 (145)
                      +......+.|.+.+++|.+  ......+.    +.+.++..++.++.|+++||+|||+++                    
T Consensus        51 ~~~~~~~~~~~l~~~~gls--~~~~g~~~----~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~  124 (476)
T PLN00028         51 STFAAAPLLPIIRDNLNLT--KSDIGNAG----IASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSA  124 (476)
T ss_pred             HHHHHHHHHHHHHHHcCCC--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCH
Confidence            3344555677888889984  44333332    366788888999999999999999988                    


Q ss_pred             ---HHHHHHhhcccc--chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036778           68 ---LGYTITFSKGMV--RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFM  120 (145)
Q Consensus        68 ---~~~~~~~~~~~~--~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~  120 (145)
                         ....+..+.+.+  .....+++|.+|++.|++++++......++..+++.+.|.+
T Consensus       125 ~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i  182 (476)
T PLN00028        125 TGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV  182 (476)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               111112221111  12234678999999999999999877777776666555543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.85  E-value=4.2e-08  Score=74.97  Aligned_cols=114  Identities=17%  Similarity=0.079  Sum_probs=77.6

Q ss_pred             chHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH--------------------
Q 036778            8 GSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL--------------------   67 (145)
Q Consensus         8 g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------------------   67 (145)
                      +......+.|.+.+++|.+ .........+++.+++.+...++.++.|+++||+|||+.+                    
T Consensus        29 ~~~~~~~~l~~~~~~~g~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~  107 (408)
T PRK09874         29 AFSLVMPFLPLYVEQLGVT-GHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNI  107 (408)
T ss_pred             HHHHhhhhHHHHHHHhCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            3344555778888888885 3222112223445577888999999999999999999998                    


Q ss_pred             ---HHHHHHhh--ccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 ---LGYTITFS--KGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 ---~~~~~~~~--~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                         ....+..+  .+..+....+..|.+|++.|++..++......++..+++.+.+.+.+
T Consensus       108 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  167 (408)
T PRK09874        108 WQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLAD  167 (408)
T ss_pred             HHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               11111111  12223344577889999999999999988888888787777776643

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.84  E-value=1.2e-08  Score=80.64  Aligned_cols=108  Identities=17%  Similarity=0.100  Sum_probs=77.4

Q ss_pred             hHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH---------------------
Q 036778            9 STAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL---------------------   67 (145)
Q Consensus         9 ~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~---------------------   67 (145)
                      ...+..-.|.+.+++|.  +.....+..+    ++.++.....+..|+++||+|||+.+                     
T Consensus        22 ~tiv~~a~p~i~~~l~~--s~~~~~~~~~----~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~   95 (495)
T PRK14995         22 ATVLHVAAPTLSMTLGA--SGNELLWIID----IYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTAS   95 (495)
T ss_pred             HHHHHHHHHHHHHHhCC--CHhHHHHHHH----HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            34455668999999988  4444444444    77788888999999999999999998                     


Q ss_pred             --HHHHHHhhcccc---chhhhhhcccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 --LGYTITFSKGMV---RLPNLIMFETF-SINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 --~~~~~~~~~~~~---~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                        .......+.+.+   +.......+.+ |++.|+++.++......++..+++.+..++.+
T Consensus        96 ~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~  156 (495)
T PRK14995         96 WLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE  156 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence              111222222222   22233445555 77899999999999999999999998888865

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.84  E-value=1.9e-08  Score=78.13  Aligned_cols=106  Identities=8%  Similarity=-0.027  Sum_probs=77.2

Q ss_pred             HHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------
Q 036778           11 AIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------   67 (145)
Q Consensus        11 ~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------   67 (145)
                      ....+.|.+.+++|.+  ......+.+    .+.++..++.++.|++.||+|||+.+                       
T Consensus        41 ~~~~~~~~~~~~~g~s--~~~~g~~~~----~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l  114 (434)
T PRK11663         41 SFNAAMPEMLADLGLS--RSDIGLLAT----LFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAF  114 (434)
T ss_pred             hHHHhhHHHHHhcCCC--HHHHHHHHH----HHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            3455678888888884  444444333    77789999999999999999999987                       


Q ss_pred             HHHHHHhh--cc-ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 LGYTITFS--KG-MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 ~~~~~~~~--~~-~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      ....+..+  .+ ..+....+..|.+|++.|++++++......++..+++.+..++..
T Consensus       115 ~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~  172 (434)
T PRK11663        115 ALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL  172 (434)
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111111  11 124455788999999999999999999988998888877776654

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.83  E-value=2.3e-08  Score=77.41  Aligned_cols=100  Identities=12%  Similarity=0.069  Sum_probs=70.8

Q ss_pred             HHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HHHHHH
Q 036778           17 SSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LGYTIT   73 (145)
Q Consensus        17 ~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~~~~~   73 (145)
                      |.+.++++.+  ........+    ++.++..++.++.|+++||+|||+++                       ...++.
T Consensus        40 ~~i~~~~~~~--~~~~~~~~s----~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l  113 (413)
T PRK15403         40 INVVRDFNAD--VSLAPASVS----LYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFI  113 (413)
T ss_pred             HHHHHHhCCC--HHHHHHHHH----HHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3455667773  444444434    77889999999999999999999988                       111222


Q ss_pred             hhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           74 FSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        74 ~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      .+.+.   .+..+.+..|.+|.+.|++.+++......++..+++.+...+.+
T Consensus       114 ~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~  165 (413)
T PRK15403        114 QGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMH  165 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22211   23445778899999999999999888888888887777766554

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.83  E-value=3.4e-08  Score=73.15  Aligned_cols=109  Identities=18%  Similarity=0.071  Sum_probs=79.2

Q ss_pred             chHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH--------------------
Q 036778            8 GSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL--------------------   67 (145)
Q Consensus         8 g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------------------   67 (145)
                      +........|.+.++.|.  +........+    ...+...++.++.|+++||+|||+.+                    
T Consensus        14 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~   87 (352)
T cd06174          14 DRGLLSPALPLLAEDLGL--SASQAGLIVS----AFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSL   87 (352)
T ss_pred             hhhhhHhhHHHHHHHcCC--CHHHHHHHHH----HHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccH
Confidence            344555667788888877  4444443333    67788999999999999999999987                    


Q ss_pred             ---HHHHHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 ---LGYTITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 ---~~~~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                         .......+.+.   .+....+..|.+|++.|++..++......++..+++.+...+.+
T Consensus        88 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  148 (352)
T cd06174          88 WLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE  148 (352)
T ss_pred             HHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence               11111222221   24455789999999999999999999999998888887776654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.82  E-value=3.2e-08  Score=78.38  Aligned_cols=109  Identities=14%  Similarity=0.030  Sum_probs=77.8

Q ss_pred             chHHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhh-CChHHH-----------HHH----
Q 036778            8 GSTAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKF-GRRPLL-----------LGY----   70 (145)
Q Consensus         8 g~~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~-grr~~~-----------~~~----   70 (145)
                      +.+.+..+.|.++.+ +|.+  ......+.+    .+.....++.+++|+++||+ ||||.+           .+.    
T Consensus        24 s~Yg~~~~L~~yL~~~lgls--~~~a~~i~~----~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~   97 (493)
T PRK15462         24 SFYGMRALLILYLTNQLKYD--DNHAYELFS----AYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASE   97 (493)
T ss_pred             HHHHHHHHHHHHHHHhcCCC--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhh
Confidence            445566677877765 7884  444443333    66677888999999999999 999987           000    


Q ss_pred             -----------HHHhhccc-cchhhhhhcccCCcc--hhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           71 -----------TITFSKGM-VRLPNLIMFETFSIN--IKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        71 -----------~~~~~~~~-~~~~~~~~~e~~p~~--~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                                 ....+.+. .+....+.+|++|++  .|+++.++.++..++|+.+++.+.+++.+
T Consensus        98 ~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~  163 (493)
T PRK15462         98 IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQE  163 (493)
T ss_pred             cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHh
Confidence                       00011111 133457889999986  79999999999999999999999988864

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.82  E-value=1.5e-08  Score=76.74  Aligned_cols=107  Identities=16%  Similarity=0.038  Sum_probs=77.1

Q ss_pred             HHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----------------------
Q 036778           10 TAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----------------------   67 (145)
Q Consensus        10 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------------------   67 (145)
                      .......|.+.+++|.  +..+.....+    .+.++..++.++.|+++||+|||+.+                      
T Consensus         8 ~~~~p~~~~~~~~~~~--s~~~~~~~~~----~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~   81 (377)
T PRK11102          8 DMYLPALPVIAADFGV--SAGSVQMTLS----AYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQ   81 (377)
T ss_pred             HHHhccHHHHHHHhCC--CHHHHHHHHH----HHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHH
Confidence            4444567888888888  4544444433    67788899999999999999999998                      


Q ss_pred             -HHHHHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 -LGYTITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 -~~~~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                       ....+..+.+.   .+....+..|.+|++.|++..++......++..+++.+.+.+.+
T Consensus        82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  140 (377)
T PRK11102         82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV  140 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11111112111   13445788999999999999999998888888888877766654

>TIGR00898 2A0119 cation transport protein

Probab=98.82  E-value=8.8e-09  Score=81.16  Aligned_cols=89  Identities=16%  Similarity=0.216  Sum_probs=64.6

Q ss_pred             ehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HHHHHHhhccc---cchhhhhhcccC
Q 036778           37 SILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LGYTITFSKGM---VRLPNLIMFETF   90 (145)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~~~~~~~~~~---~~~~~~~~~e~~   90 (145)
                      +++.+.+.++.+++.++.|+++||+|||+++                       ....+..+.+.   .+....+++|.+
T Consensus       130 ~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~  209 (505)
T TIGR00898       130 DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFL  209 (505)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheec
Confidence            3445588899999999999999999999988                       11222222222   255678899999


Q ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 036778           91 SINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWST  125 (145)
Q Consensus        91 p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (145)
                      |++.|++..++......+|..+.+.+...+..|+.
T Consensus       210 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~  244 (505)
T TIGR00898       210 PKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRW  244 (505)
T ss_pred             ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            99999999999877777777766665544444544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.81  E-value=2.5e-08  Score=76.41  Aligned_cols=108  Identities=6%  Similarity=-0.073  Sum_probs=77.6

Q ss_pred             hHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH---------------------
Q 036778            9 STAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL---------------------   67 (145)
Q Consensus         9 ~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~---------------------   67 (145)
                      .+....+.|.+.++.|.+  ........    +...++..++.+..+++.||+|||+.+                     
T Consensus       236 ~~~~~~~~p~~~~~~g~s--~~~~~~~~----~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (406)
T PRK11551        236 LYFLLNWLPSLLVGQGLS--RSQAGLVQ----IAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFA  309 (406)
T ss_pred             HHHHHHHHHHHHHhCCCC--hhhhhHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence            344555678888887774  33333332    256688899999999999999999987                     


Q ss_pred             --HHHHHHhh---ccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 --LGYTITFS---KGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 --~~~~~~~~---~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                        ....+..+   .+..+..+.+..|.+|++.|+++.++.+....++..+++.+.+++.+
T Consensus       310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~  369 (406)
T PRK11551        310 GMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA  369 (406)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhc
Confidence              00001111   11124455788999999999999999999999999999999888764

>PRK10504 putative transporter; Provisional

Probab=98.80  E-value=3.9e-08  Score=76.90  Aligned_cols=110  Identities=17%  Similarity=0.086  Sum_probs=79.1

Q ss_pred             hchHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-------------------
Q 036778            7 GGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-------------------   67 (145)
Q Consensus         7 ~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-------------------   67 (145)
                      .....+....|.+.+++|.+  .....+...    .+.++..++.++.++++||+|||+.+                   
T Consensus        24 ~~~~~~~~~~p~~~~~~g~s--~~~~~~~~~----~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~   97 (471)
T PRK10504         24 LDTTIVNTALPSMAQSLGES--PLHMHMVIV----SYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGT   97 (471)
T ss_pred             HhHHHHHHHHHHHHHHhCcC--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCC
Confidence            34455666789999999984  443333333    66788888999999999999999987                   


Q ss_pred             ----HHHHHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 ----LGYTITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 ----~~~~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                          .......+.+.   .+....++.|.+|++.|+++.++......++..+++.+...+.+
T Consensus        98 ~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~  159 (471)
T PRK10504         98 LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVE  159 (471)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh
Confidence                11112222222   24455678899999999999999998888888888877776654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.79  E-value=4e-08  Score=75.06  Aligned_cols=105  Identities=8%  Similarity=-0.099  Sum_probs=72.5

Q ss_pred             HHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------
Q 036778           11 AIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------   67 (145)
Q Consensus        11 ~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------   67 (145)
                      ......|.+.+++|.+  .......    .+.+.++..++.++.|++.||+|||+++                       
T Consensus        21 ~~~~~l~~~~~~~g~s--~~~~g~~----~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l   94 (382)
T PRK10091         21 GIMGVLTELAHDVGIS--IPAAGHM----ISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLML   94 (382)
T ss_pred             HHHhChHHHHHHcCCC--HHHHhHH----HHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence            3445667788888884  4433333    3377899999999999999999999998                       


Q ss_pred             HHHHHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           68 LGYTITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        68 ~~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                      ....+..+.+.+   +....+..|.+|++.|++.+++......++..+++.+..++.
T Consensus        95 ~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~  151 (382)
T PRK10091         95 AIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLS  151 (382)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHh
Confidence            112222222211   333467789999999999999888777777777666555544

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.79  E-value=1.7e-08  Score=77.75  Aligned_cols=122  Identities=11%  Similarity=-0.084  Sum_probs=85.9

Q ss_pred             HHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------
Q 036778           12 IAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------   67 (145)
Q Consensus        12 ~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------   67 (145)
                      ...+.|.+.++ .|.+  +.....+.    ++..++..++.++.+++.||.++++.+                       
T Consensus       242 ~~~~~p~~~~~~~g~~--~~~~g~~~----~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  315 (417)
T PRK10489        242 VRVLYPALADEVWQMG--AAQIGLLY----AAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILA  315 (417)
T ss_pred             HHHhhHHHHHhccCCC--hhHhHHHH----HHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHH
Confidence            34466777777 7774  43333322    356688889999999999998777654                       


Q ss_pred             HHHHHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh-ccC------------------
Q 036778           68 LGYTITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE-WST------------------  125 (145)
Q Consensus        68 ~~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------------  125 (145)
                      ....+.++.+.+   +....+..|..|.+.|+++.++......++..+++.+.+++.+ ++.                  
T Consensus       316 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~  395 (417)
T PRK10489        316 VLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLL  395 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence            011111111111   3334678899999999999999999999999999999988876 222                  


Q ss_pred             ----CCCCCCCHHHHHHH
Q 036778          126 ----IETKGRTLEEIQRS  139 (145)
Q Consensus       126 ----pet~~~~l~~i~~~  139 (145)
                          ||+|++++||+|+.
T Consensus       396 ~~~~~~~~~~~~~~~~~~  413 (417)
T PRK10489        396 LLVLGELRRFRQTPPEVD  413 (417)
T ss_pred             HHhcccccccccccccCC
Confidence                99999999998864

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.79  E-value=3.5e-08  Score=75.86  Aligned_cols=104  Identities=11%  Similarity=-0.076  Sum_probs=73.3

Q ss_pred             HHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH--------------------HHHHH
Q 036778           13 AYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL--------------------LGYTI   72 (145)
Q Consensus        13 ~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------------------~~~~~   72 (145)
                      ....+.+.++++.+  .....++    .+++.+...+..++.|+++||+|||+++                    ....+
T Consensus        23 ~~~~~~~~~~~~~s--~~~~~~~----~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~~~~r~   96 (393)
T PRK11195         23 LFAAIALLKELHYP--DWSQPLL----QMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHPLLAYG   96 (393)
T ss_pred             HHHHHHHHHHcCCc--HHHHHHH----HHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556677773  4333333    3478899999999999999999999988                    01111


Q ss_pred             Hhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           73 TFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        73 ~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      ..+.+   ..|...++++|++|++.|+++.++......++..+++.+.+++.+
T Consensus        97 l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~  149 (393)
T PRK11195         97 LVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD  149 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11221   125566789999999999999999988888887777777665554

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.78  E-value=9.9e-08  Score=74.57  Aligned_cols=79  Identities=19%  Similarity=0.127  Sum_probs=58.0

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHhhhCChHHHHH-----------------------------------HHHHhhcccc---
Q 036778           38 ILRHIQSLFQVPVVGSSVLLADKFGRRPLLLG-----------------------------------YTITFSKGMV---   79 (145)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~~-----------------------------------~~~~~~~~~~---   79 (145)
                      ++.+.+.++..+++++.|+++||+|||+++..                                   .++..+.+.+   
T Consensus        59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~  138 (479)
T PRK10077         59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLAS  138 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHh
Confidence            44558889999999999999999999999800                                   0011111111   


Q ss_pred             chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 036778           80 RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYA  116 (145)
Q Consensus        80 ~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~  116 (145)
                      +...++++|.+|++.|++.+++......+|..+.+..
T Consensus       139 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~  175 (479)
T PRK10077        139 MLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFV  175 (479)
T ss_pred             hHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            4456789999999999999999887777776665443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=98.78  E-value=6.5e-08  Score=72.82  Aligned_cols=109  Identities=18%  Similarity=0.049  Sum_probs=73.0

Q ss_pred             hhchHHHHHhHHH-HHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------
Q 036778            6 LGGSTAIAYYASS-IFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------   67 (145)
Q Consensus         6 ~~g~~~~~~~~~~-i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------   67 (145)
                      .........+.|. +.+++|.+  .....++.+    .+.++..++.++.|+++||+|||+.+                 
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~s--~~~~~~~~~----~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~   87 (366)
T TIGR00886        14 FSVWFAFSPLAVQMIKDDLGLS--TAQLGNLVA----VPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA   87 (366)
T ss_pred             HHHHHHhHHhhhHHHHHHhCCC--HHHhhHhhH----HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence            3344555666774 66778984  544444443    77799999999999999999999988                 


Q ss_pred             -------HHHHHHhhc--cccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036778           68 -------LGYTITFSK--GMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFM  120 (145)
Q Consensus        68 -------~~~~~~~~~--~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~  120 (145)
                             ....+..+.  +..+....+++|.+|++.|++..++......++..+++.+.+.+
T Consensus        88 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  149 (366)
T TIGR00886        88 VQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI  149 (366)
T ss_pred             hhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence                   011111111  11133456888999999999999998866666666655555433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.78  E-value=5.4e-08  Score=75.56  Aligned_cols=107  Identities=15%  Similarity=0.161  Sum_probs=65.1

Q ss_pred             chHHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHH-----H--HH--HH--h-
Q 036778            8 GSTAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLL-----G--YT--IT--F-   74 (145)
Q Consensus         8 g~~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~-----~--~~--~~--~-   74 (145)
                      +.+....|.|.++++ .|.+  .........    ...++..++.++.++++||+|||+.+.     .  ..  ..  . 
T Consensus       258 ~~~~~~~~lp~~l~~~~g~s--~~~~~~~~~----i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~  331 (432)
T PRK10406        258 CFYTFTTYMQKYLVNTAGMH--ANVASGIMT----AALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQ  331 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCCC--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556678888764 6774  332222222    334566777888899999999999770     0  00  00  0 


Q ss_pred             -----------------hccc-cchhhhhhcccCCcchhhhHHHHHHHHHHHH-HHHHHHHHHHH
Q 036778           75 -----------------SKGM-VRLPNLIMFETFSINIKGSAGSLVTFLHNNS-NSLVAYAFNFM  120 (145)
Q Consensus        75 -----------------~~~~-~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~-~~~~~~~~~~~  120 (145)
                                       ..+. .+..+.+.+|.+|++.|++++|+.+..++.. +...+.+...+
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l  396 (432)
T PRK10406        332 NVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL  396 (432)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH
Confidence                             0000 1234567889999999999999999776642 33355544444

>PRK15075 citrate-proton symporter; Provisional

Probab=98.77  E-value=4.5e-08  Score=76.04  Aligned_cols=112  Identities=14%  Similarity=0.063  Sum_probs=73.5

Q ss_pred             hhhchHHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHH-------HHH--HH-
Q 036778            5 TLGGSTAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLL-------GYT--IT-   73 (145)
Q Consensus         5 ~~~g~~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~-------~~~--~~-   73 (145)
                      +..+.+.+..|.|.++++ .|.+  .......    ...+.++.+++.+..++++||+|||+.+.       ...  .. 
T Consensus       250 ~~~~~~~~~~~~p~~l~~~~g~~--~~~~~~~----~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~  323 (434)
T PRK15075        250 TTVSFYLITVYTPTFGKTVLHLS--AADSLLV----TLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALS  323 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCC--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            344566677889999886 6884  3332222    22555788899999999999999999870       000  00 


Q ss_pred             -----------------hhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHH-HHHHHHHHHHHHhh
Q 036778           74 -----------------FSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNN-SNSLVAYAFNFMIE  122 (145)
Q Consensus        74 -----------------~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~  122 (145)
                                       .+.+   ..+..+.+.+|.+|++.|+++.++.+.++.. ++.+++.+.+++.+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~  393 (434)
T PRK15075        324 WLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIH  393 (434)
T ss_pred             HHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence                             0000   0123456788999999999999997655554 46667777766654

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.76  E-value=7.4e-08  Score=74.20  Aligned_cols=105  Identities=16%  Similarity=0.098  Sum_probs=74.0

Q ss_pred             HHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------H
Q 036778           12 IAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------L   68 (145)
Q Consensus        12 ~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~   68 (145)
                      +..+.|.++++.|.+  .......    .+...++.+++.++.+++.||+|||+.+                       .
T Consensus       250 ~~~~~~~~~~~~g~~--~~~~~~~----~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (426)
T PRK12307        250 IFGLLPTYLAGEGFD--TGVVSNL----MTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLL  323 (426)
T ss_pred             HHHHHHHHHHHcCCC--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHH
Confidence            455678888877774  3332222    2356688899999999999999999987                       0


Q ss_pred             HHHHHhh-----ccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           69 GYTITFS-----KGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        69 ~~~~~~~-----~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      .....++     .+..+..+.++.|.+|++.|++++|+......+++.+++.+..++.+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~  382 (426)
T PRK12307        324 LGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGI  382 (426)
T ss_pred             HHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence            0000111     11123345677899999999999999999999999888888877665

>PRK09952 shikimate transporter; Provisional

Probab=98.76  E-value=8.1e-08  Score=74.83  Aligned_cols=109  Identities=11%  Similarity=0.090  Sum_probs=69.2

Q ss_pred             chHHHHHhHHHHHh-hhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHH-------H----H-H---
Q 036778            8 GSTAIAYYASSIFD-VASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLL-------G----Y-T---   71 (145)
Q Consensus         8 g~~~~~~~~~~i~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~-------~----~-~---   71 (145)
                      +.+....+.|.+.+ +.|.+  ........    ....+...++.++.++++||+|||+.+.       .    + .   
T Consensus       265 ~~~~~~~~~~~y~~~~~g~s--~~~~~~~~----~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~  338 (438)
T PRK09952        265 TMYIVTAFALNYSTQNLGLP--RELFLNIG----LLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE  338 (438)
T ss_pred             HHHHHHHHHHHHHHHhcCCC--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555556777665 47774  32211111    1233667778889999999999999770       0    0 0   


Q ss_pred             ------------HHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHH-HHHHHHHHHHHHHhh
Q 036778           72 ------------ITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHN-NSNSLVAYAFNFMIE  122 (145)
Q Consensus        72 ------------~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~-~~~~~~~~~~~~~~~  122 (145)
                                  ...+.+   ..+..+.+.+|.+|++.|+++.++.+..+. +++.+.|.+.+++.+
T Consensus       339 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~  405 (438)
T PRK09952        339 AQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVT  405 (438)
T ss_pred             cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        000001   013356788999999999999999876654 677788888777754

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.75  E-value=6.7e-08  Score=74.19  Aligned_cols=102  Identities=12%  Similarity=0.001  Sum_probs=70.7

Q ss_pred             hHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HHHH
Q 036778           15 YASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LGYT   71 (145)
Q Consensus        15 ~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~~~   71 (145)
                      ..|.+.++++.+  ........+    .+.++..++.++.|.++||+|||+.+                       ....
T Consensus        35 ~~~~~~~~~~~s--~~~~~~~~~----~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~  108 (406)
T PRK15402         35 GMLAVVEDFNAG--AEWVPTSMT----AYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLR  108 (406)
T ss_pred             chHHHHHHhCCC--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            445666778884  444444333    67788999999999999999999998                       1111


Q ss_pred             HHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           72 ITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        72 ~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      +..+.+.   .+..+.+..|.+|++.|.+..++......++..+++.+..++.+
T Consensus       109 ~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~  162 (406)
T PRK15402        109 FLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH  162 (406)
T ss_pred             HHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1112111   24456778899999999999998887777777777776665544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.74  E-value=7.1e-08  Score=73.87  Aligned_cols=104  Identities=17%  Similarity=0.078  Sum_probs=73.4

Q ss_pred             HHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------
Q 036778           11 AIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------   67 (145)
Q Consensus        11 ~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------   67 (145)
                      ......|.+.+++|.  +..+...+.+    .+.++..++.++.|+++||+|||+++                       
T Consensus        33 ~~~~~~~~~~~~~~~--s~~~~g~~~~----~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (406)
T PRK11551         33 SAGVAAPRMAQEFGL--DVAQMGWAFS----AGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSL  106 (406)
T ss_pred             HHHHHHHHHHHHhCC--CHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHH
Confidence            344556777788888  4544444333    77788999999999999999999998                       


Q ss_pred             HHHHHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036778           68 LGYTITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFM  120 (145)
Q Consensus        68 ~~~~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~  120 (145)
                      ....+..+.+.   .+....++.|.+|++.|++++++......++..+++.+...+
T Consensus       107 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~  162 (406)
T PRK11551        107 LVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLA  162 (406)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111222221   134457889999999999999999888878777776665443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.74  E-value=6e-08  Score=72.24  Aligned_cols=109  Identities=17%  Similarity=0.105  Sum_probs=77.5

Q ss_pred             chHHHHHhHH-HHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH---------H---------
Q 036778            8 GSTAIAYYAS-SIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL---------L---------   68 (145)
Q Consensus         8 g~~~~~~~~~-~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~---------~---------   68 (145)
                      +........| .+.+++|.+  ..+..++.+    .+.+...++.++.|+++||+|||+++         .         
T Consensus        11 ~~~~~~~~~~~~~~~~~~~s--~~~~~~~~~----~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~   84 (352)
T PF07690_consen   11 GFSIISPALPLYLAEELGLS--PSQIGLLFS----AFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASN   84 (352)
T ss_dssp             HHHHHHHHHH-HHHCCSTTT--SHCHHHHHH----HHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHccCCC--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhh
Confidence            3344455566 566778884  444444333    77889999999999999999999987         0         


Q ss_pred             -----HHHHHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           69 -----GYTITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        69 -----~~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                           ...+..+.+   ..+....++.|.+|++.|++..++......++..+++.+.+++.+
T Consensus        85 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~  146 (352)
T PF07690_consen   85 FWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLIS  146 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhh
Confidence                 000011111   124455788999999999999999999999999999988888763

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.74  E-value=1.4e-07  Score=74.44  Aligned_cols=108  Identities=15%  Similarity=0.017  Sum_probs=67.5

Q ss_pred             HHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-------------------H--
Q 036778           10 TAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-------------------L--   68 (145)
Q Consensus        10 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-------------------~--   68 (145)
                      ....+..|.+.++++.+.++.........+.++..++..++.++.|++.||+|||+++                   .  
T Consensus        33 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~  112 (490)
T PRK10642         33 GVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYAT  112 (490)
T ss_pred             HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence            3444556666666654312221111110112466688889999999999999999998                   0  


Q ss_pred             ----------HHHHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 036778           69 ----------GYTITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAF  117 (145)
Q Consensus        69 ----------~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~  117 (145)
                                ..++..+.+.+   +....+++|.+|++.|++..++......+|..+++.+.
T Consensus       113 ~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642        113 IGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence                      01112222222   44567899999999999999988766666666555443

>PRK10054 putative transporter; Provisional

Probab=98.73  E-value=9.2e-08  Score=73.58  Aligned_cols=111  Identities=14%  Similarity=0.066  Sum_probs=77.0

Q ss_pred             hhchHHHHHhHHHHHh-hhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------
Q 036778            6 LGGSTAIAYYASSIFD-VASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------   67 (145)
Q Consensus         6 ~~g~~~~~~~~~~i~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------   67 (145)
                      ..+......+.|.+++ ++|.  +.....+..+    .+.++..++.++.|+++||+|||+++                 
T Consensus        20 ~~g~~~~~~~l~~~l~~~~g~--s~~~~g~~~s----~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~   93 (395)
T PRK10054         20 TIGRGATLPFMTIYLSRQYSL--SVDLIGYAMT----IALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV   93 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHcCC--CHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH
Confidence            3444555556666664 5788  4544444333    66788888999999999999999987                 


Q ss_pred             ------HHHHHHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 ------LGYTITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 ------~~~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                            .......+.+   ..+....+.+|..|++.|+++.++.....+++..+++.+.+++..
T Consensus        94 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~  157 (395)
T PRK10054         94 NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM  157 (395)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  0000011111   113345677899999999999999999999999988888887654

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.73  E-value=5.8e-08  Score=75.10  Aligned_cols=115  Identities=13%  Similarity=0.053  Sum_probs=76.7

Q ss_pred             hhhhchHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----------------
Q 036778            4 QTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----------------   67 (145)
Q Consensus         4 ~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------------   67 (145)
                      ++..+.+.+..|.|.++++.+.+.+........    +.+.++..++.+..++++||++||+..                
T Consensus       253 ~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~----~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~  328 (412)
T TIGR02332       253 CLTNTLSAINIWTPQILQSFNQGSSNIMIGLLA----AIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLAS  328 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHh----hHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHH
Confidence            344456667789999998753321333333222    366788999999999999999977742                


Q ss_pred             -----HHH---HHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 -----LGY---TITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 -----~~~---~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                           ...   ......+.   .+..+....|.+|++.|+++.|+.+..+++++++++.+.+.+.+
T Consensus       329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~  394 (412)
T TIGR02332       329 ATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKD  394 (412)
T ss_pred             hcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccc
Confidence                 000   00001111   12233455688999999999999999999999999988776653

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK15075 citrate-proton symporter; Provisional

Probab=98.73  E-value=1.9e-07  Score=72.52  Aligned_cols=111  Identities=14%  Similarity=0.012  Sum_probs=68.5

Q ss_pred             hhhchHHHHHhHHHHHhhhCCCCCcchhhhheeh-hhhhhhhhhhhHHHHHHHHHhhhCChHHH----------------
Q 036778            5 TLGGSTAIAYYASSIFDVASNKLSTKFGNFRISI-LRHIQSLFQVPVVGSSVLLADKFGRRPLL----------------   67 (145)
Q Consensus         5 ~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------------   67 (145)
                      +......+.++.|.+.++++.+ +.....+..+. ......+...+++++.|+++||+|||+.+                
T Consensus        27 ~~~d~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~  105 (434)
T PRK15075         27 EMFDFFLFGFYATAIAKTFFPA-GNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAF  105 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHh
Confidence            3344456778889999998885 33322222110 00111233346788999999999999998                


Q ss_pred             ---H------------HHHHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 036778           68 ---L------------GYTITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYA  116 (145)
Q Consensus        68 ---~------------~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~  116 (145)
                         .            ..++..+.+.+   +....+.+|.+|++.|++.+++.....+++..+++.+
T Consensus       106 ~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~  172 (434)
T PRK15075        106 VPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALL  172 (434)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence               0            01112222222   3345789999999999999999877666655544443

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.70  E-value=1.3e-07  Score=74.27  Aligned_cols=107  Identities=11%  Similarity=0.075  Sum_probs=75.9

Q ss_pred             HHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----------------------
Q 036778           10 TAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----------------------   67 (145)
Q Consensus        10 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------------------   67 (145)
                      .......|.+.+++|.+  ......+.+    .+.++..++.++.|+++||+|||+.+                      
T Consensus        37 ~~~~~~~~~i~~~~~~s--~~~~~~~~~----~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~  110 (496)
T PRK03893         37 VLITLVLTEVQGEFGLT--TVQAASLIS----AAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWT  110 (496)
T ss_pred             HHHHHHHHHHHHHhCCC--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            34445567777888884  443333333    66788899999999999999999987                      


Q ss_pred             -HHHHHHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 -LGYTITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 -~~~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                       ....+..+.+   ..+....+..|.+|.+.|+++.++......++..+++.+..++..
T Consensus       111 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  169 (496)
T PRK03893        111 LFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVP  169 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             1111111111   123445678999999999999999998888888888887776654

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.70  E-value=6.6e-08  Score=76.76  Aligned_cols=86  Identities=19%  Similarity=0.164  Sum_probs=66.5

Q ss_pred             hhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HHHHHHh---hccccchhhhhhcccCCc
Q 036778           39 LRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LGYTITF---SKGMVRLPNLIMFETFSI   92 (145)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~~~~~~---~~~~~~~~~~~~~e~~p~   92 (145)
                      ..+.+.++.++|+++.|.++||+|||+++                       ..+++..   ..+.....+.+.+|++++
T Consensus       123 ~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~  202 (521)
T KOG0255|consen  123 GQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSP  202 (521)
T ss_pred             HHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCc
Confidence            34478899999999999999999999998                       2222222   233335677899999999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHhh-ccC
Q 036778           93 NIKGSAGSLVTFLHNNSNSLVAYAFNFMIE-WST  125 (145)
Q Consensus        93 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  125 (145)
                      +.|+.+..+ ....+.++.+.+....++.. |++
T Consensus       203 ~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~  235 (521)
T KOG0255|consen  203 KQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRW  235 (521)
T ss_pred             chhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHH
Confidence            999999999 77777777777777776665 766

>PRK03699 putative transporter; Provisional

Probab=98.70  E-value=1.9e-07  Score=71.65  Aligned_cols=105  Identities=5%  Similarity=-0.018  Sum_probs=73.0

Q ss_pred             HHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------
Q 036778           11 AIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------   67 (145)
Q Consensus        11 ~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------   67 (145)
                      ......|.+.+++|.+  ........+    .+.++..++.++.+++.||+|||+++                       
T Consensus        25 ~~g~~~~~i~~~~~~s--~~~~g~~~s----~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~   98 (394)
T PRK03699         25 VTGMVMGPIAEYFNLP--VSSMSNTFT----FLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALF   98 (394)
T ss_pred             HHhhhhHHHHHHhCCC--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHH
Confidence            4445567788888884  444443333    67788999999999999999999998                       


Q ss_pred             HHHHHHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           68 LGYTITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        68 ~~~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                      ....+..+.+   ..+....+++|.+|++.|++..++......+++.+.+.+..++.
T Consensus        99 ~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~  155 (394)
T PRK03699         99 SIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL  155 (394)
T ss_pred             HHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111111   11344567889999999999998887777777777777766553

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.70  E-value=2.3e-08  Score=75.03  Aligned_cols=101  Identities=12%  Similarity=-0.114  Sum_probs=73.4

Q ss_pred             chHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH--------------------
Q 036778            8 GSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL--------------------   67 (145)
Q Consensus         8 g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------------------   67 (145)
                      .........|.+.+++|.+  .....++    .+.+.++..++.++.|+++||+|||+.+                    
T Consensus        10 ~~~~~~~~~~~~~~~~g~s--~~~~g~~----~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   83 (379)
T TIGR00881        10 VRKNFALAMPYLVEEIGLS--KTDLGLL----LSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL   83 (379)
T ss_pred             hHHhhhhhhHHHHHHhCCC--HhHHHHH----HHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH
Confidence            3445556678888888984  4444433    3377789999999999999999999988                    


Q ss_pred             ---HHHHHHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHH
Q 036778           68 ---LGYTITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVA  114 (145)
Q Consensus        68 ---~~~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~  114 (145)
                         ....+..+.+   ..+....+.+|.+|++.|++..++......++..+++
T Consensus        84 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~  136 (379)
T TIGR00881        84 WVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLP  136 (379)
T ss_pred             HHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHH
Confidence               1111111221   2255567899999999999999998888888887777

>TIGR00895 2A0115 benzoate transport

Probab=98.70  E-value=1.3e-07  Score=71.40  Aligned_cols=107  Identities=10%  Similarity=-0.039  Sum_probs=74.9

Q ss_pred             chHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH--------------------
Q 036778            8 GSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL--------------------   67 (145)
Q Consensus         8 g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------------------   67 (145)
                      +......+.|.+.++.|.+  ........    +...++..++.++.+++.||+|||+..                    
T Consensus       265 ~~~~~~~~~~~~~~~~g~~--~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (398)
T TIGR00895       265 GVYFLTNWLPKLMVELGFS--LSLAATGG----ALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSP  338 (398)
T ss_pred             HHHHHHHHHHHHHHHcCCC--HHHHHHHH----HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCH
Confidence            3445556778777778874  43333322    356688899999999999999999655                    


Q ss_pred             ---HHHHHHhhc---cccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036778           68 ---LGYTITFSK---GMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFM  120 (145)
Q Consensus        68 ---~~~~~~~~~---~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~  120 (145)
                         .......+.   ...+..+.+..|.+|++.|+++.|+......++..+++.+..++
T Consensus       339 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       339 TLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence               000011111   11244567889999999999999999999999998888877654

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.69  E-value=1.2e-07  Score=74.43  Aligned_cols=107  Identities=8%  Similarity=-0.047  Sum_probs=72.5

Q ss_pred             HHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH---------H-----------
Q 036778           10 TAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL---------L-----------   68 (145)
Q Consensus        10 ~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~---------~-----------   68 (145)
                      .....+.|.++++ .|.+  ........    +.+.++..++.+++|+++||+|||+..         .           
T Consensus       275 ~~~~~~~p~yl~~~~g~s--~~~a~~~~----~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  348 (467)
T PRK09556        275 IGIDNWSPVYAFQELGFS--KEDAINTF----TLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATS  348 (467)
T ss_pred             HHHHHHHHHHHHHccCCC--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCc
Confidence            4456678888765 7884  44333332    356688999999999999999998865         0           


Q ss_pred             -----HHHHHhhcc-ccc--hhhhhhcccCCcchhhhHHHHHHHHHHH-HHHHHHHHHHHHhh
Q 036778           69 -----GYTITFSKG-MVR--LPNLIMFETFSINIKGSAGSLVTFLHNN-SNSLVAYAFNFMIE  122 (145)
Q Consensus        69 -----~~~~~~~~~-~~~--~~~~~~~e~~p~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~  122 (145)
                           ...+..+.. .++  .......|.+|++.|+++.|+.+..+++ ++++.+.+.+++.+
T Consensus       349 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        349 EYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence                 000000100 011  1124567999999999999999988886 66788888877766

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.68  E-value=1.4e-07  Score=72.78  Aligned_cols=81  Identities=16%  Similarity=0.069  Sum_probs=61.9

Q ss_pred             ehhhhhhhhhhhhHHHHHHHHHhhhCChHHH--------------------------HHHHHHhhcccc---chhhhhhc
Q 036778           37 SILRHIQSLFQVPVVGSSVLLADKFGRRPLL--------------------------LGYTITFSKGMV---RLPNLIMF   87 (145)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------------------------~~~~~~~~~~~~---~~~~~~~~   87 (145)
                      +++.+.+.++..++.++.|+++||+|||+++                          ....+..+.+.+   +....+++
T Consensus        74 ~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~  153 (481)
T TIGR00879        74 GLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLS  153 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHH
Confidence            3445588899999999999999999999987                          001111122222   34567899


Q ss_pred             ccCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 036778           88 ETFSINIKGSAGSLVTFLHNNSNSLVAYAF  117 (145)
Q Consensus        88 e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~  117 (145)
                      |.+|++.|++++++......+|..+++.+.
T Consensus       154 ~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       154 EIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             ccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999988888888888776

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.67  E-value=1.9e-07  Score=69.93  Aligned_cols=102  Identities=12%  Similarity=0.005  Sum_probs=70.9

Q ss_pred             hHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HH--
Q 036778           15 YASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LG--   69 (145)
Q Consensus        15 ~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~--   69 (145)
                      +.+.+.++.+.+  ........    +.+.+...++.+..+++.||+|||+.+                       ..  
T Consensus       227 ~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (377)
T TIGR00890       227 LYKPYGQSLGLS--DGFLVLAV----SISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLA  300 (377)
T ss_pred             HHHHHHHHcCCC--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHH
Confidence            445556667763  33322222    356688899999999999999999877                       00  


Q ss_pred             HHHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           70 YTITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        70 ~~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      .....+.+.   .+....+.+|.+|++.|++..|+......++..+++.+.+.+.+
T Consensus       301 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  356 (377)
T TIGR00890       301 TVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT  356 (377)
T ss_pred             HHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            001111111   13334678899999999999999999999999999988887754

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.67  E-value=2.3e-07  Score=70.47  Aligned_cols=102  Identities=11%  Similarity=0.045  Sum_probs=72.4

Q ss_pred             hHHHHHh-hhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHH---------------------H---
Q 036778           15 YASSIFD-VASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLL---------------------G---   69 (145)
Q Consensus        15 ~~~~i~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~---------------------~---   69 (145)
                      +.|.+.+ +.|.+  ......+.    +...++..++.++.+++.||+|||+.+.                     .   
T Consensus       260 ~~~~~~~~~~g~s--~~~~~~~~----~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (405)
T TIGR00891       260 LLPTYLKADLGLS--PHTVANIV----VFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGL  333 (405)
T ss_pred             hhHHHHHHHhCCC--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence            4455554 46773  43333332    2566888999999999999999999770                     0   


Q ss_pred             ---HHHHhhccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           70 ---YTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        70 ---~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                         .......+..+..+.+..|.+|++.|+++.|+.+....++..+++.+.+++.+
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~  389 (405)
T TIGR00891       334 GLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQ  389 (405)
T ss_pred             HHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence               00001112224455788999999999999999999999999999999888765

>PRK12382 putative transporter; Provisional

Probab=98.67  E-value=1.3e-07  Score=72.14  Aligned_cols=97  Identities=14%  Similarity=0.003  Sum_probs=66.6

Q ss_pred             HhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHHH----HH------------------------
Q 036778           20 FDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLLG----YT------------------------   71 (145)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~~----~~------------------------   71 (145)
                      .+++|.  +..+..++.+    .+.+...+++++.|+++||+||||.+..    ..                        
T Consensus        43 ~~~lg~--s~~~~g~~~s----~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  116 (392)
T PRK12382         43 HHDLGF--GNTMVGIAVG----IQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLV  116 (392)
T ss_pred             HHhcCC--cHHHHHHHHH----HHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHH
Confidence            456888  4544444444    7889999999999999999999999810    00                        


Q ss_pred             ---HHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           72 ---ITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        72 ---~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                         +..+.+.+   +....+..|.+|++.|++++++.......+..+++.+.+++..
T Consensus       117 ~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~  173 (392)
T PRK12382        117 VGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHS  173 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence               00111111   2223466799999999999999887777777777777666544

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.67  E-value=1.3e-07  Score=70.98  Aligned_cols=109  Identities=17%  Similarity=0.077  Sum_probs=76.5

Q ss_pred             chHHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChH--HH-----------------
Q 036778            8 GSTAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRP--LL-----------------   67 (145)
Q Consensus         8 g~~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~--~~-----------------   67 (145)
                      .......+.|.+.++ .|.  +........    +...++..++.+..+++.||++||+  ..                 
T Consensus       230 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (399)
T TIGR00893       230 GLGFFLTWFPTYLVQERGL--SILEAGFMA----SLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLM  303 (399)
T ss_pred             HHHHHHHHHHHHHHHHhcc--cHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHH
Confidence            334555667777765 666  343333322    3566888999999999999999996  11                 


Q ss_pred             --------------HHHHHHhhccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 --------------LGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 --------------~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                                    .........+..+..+.+.+|.+|++.|+++.++...+..++..+++.+.+++.+
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~  372 (399)
T TIGR00893       304 FATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAA  372 (399)
T ss_pred             HHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhcc
Confidence                          0001111122245667889999999999999999999999999999998887754

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.65  E-value=4.5e-07  Score=70.45  Aligned_cols=106  Identities=13%  Similarity=-0.078  Sum_probs=63.9

Q ss_pred             HHHHHhHHHHHhhhCCC-CCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------H---------
Q 036778           10 TAIAYYASSIFDVASNK-LSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------L---------   68 (145)
Q Consensus        10 ~~~~~~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------~---------   68 (145)
                      ..+.+..|.+.++++.+ .+........+ +.+...++..++.+++|+++||+|||+.+           .         
T Consensus        39 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~  117 (432)
T PRK10406         39 YVYSFCSLYFAHIFFPSGNTTTQLLQTAG-VFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYE  117 (432)
T ss_pred             HHHHHHHHHHHHHhCCCCCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCch
Confidence            44555666677776531 01211111111 11244466668999999999999999988           0         


Q ss_pred             -----------HHHHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 036778           69 -----------GYTITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYA  116 (145)
Q Consensus        69 -----------~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~  116 (145)
                                 ..++..+.+.+   +....+++|.+|++.|++..++.......|..+++.+
T Consensus       118 ~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~  179 (432)
T PRK10406        118 TIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLV  179 (432)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence                       01111122222   5556899999999999999888766655555555443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.64  E-value=1.6e-07  Score=72.16  Aligned_cols=104  Identities=8%  Similarity=0.017  Sum_probs=73.7

Q ss_pred             HHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------H
Q 036778           12 IAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------L   68 (145)
Q Consensus        12 ~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~   68 (145)
                      +....|.+.+++|.+  ..+..+..    +.+.++..++++..++++||+|||+++                       .
T Consensus        28 ~~~~lp~i~~~~~~s--~~~~g~~~----s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll  101 (393)
T PRK09705         28 VGPLLPQLRQASGMS--FSVAALLT----ALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLL  101 (393)
T ss_pred             cchhHHHHHHHhCCC--HHHHHHHH----HHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHH
Confidence            445678888889984  44444443    378889999999999999999999999                       1


Q ss_pred             HHHHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           69 GYTITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        69 ~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      ..++..+.+.+   +....++.|.+| +.|++.+++.......|..+++.+.|++.+
T Consensus       102 ~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~  157 (393)
T PRK09705        102 SSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQ  157 (393)
T ss_pred             HHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222222   233467788887 779999999888777777787777776543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.61  E-value=2.1e-07  Score=71.00  Aligned_cols=107  Identities=6%  Similarity=-0.110  Sum_probs=75.2

Q ss_pred             HHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----------------------
Q 036778           10 TAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----------------------   67 (145)
Q Consensus        10 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------------------   67 (145)
                      ..+..+.|.+.+++|.  +..+..++.    +.+.++..++.++.++++||+|||+.+                      
T Consensus        23 ~~~~~~lp~~~~~~~~--s~~~~G~~~----s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~   96 (381)
T PRK03633         23 AVLNTLVPLWLAQEHL--PTWQVGVVS----SSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWS   96 (381)
T ss_pred             hhHHHHHHHHHHHcCC--CHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            4455678888888888  454444444    488899999999999999999999988                      


Q ss_pred             -HHHHHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 -LGYTITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 -~~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                       ....+..+.+.+   +.......+..|.+.|++.++.......+|..+++.+.+.+..
T Consensus        97 l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  155 (381)
T PRK03633         97 WLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST  155 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence             111122222221   2222345677888899999999988888888888877766543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=98.60  E-value=5.4e-07  Score=66.72  Aligned_cols=112  Identities=16%  Similarity=0.106  Sum_probs=80.9

Q ss_pred             hhhchHHHHHhHHHHHhhh-CCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChH-HH---------------
Q 036778            5 TLGGSTAIAYYASSIFDVA-SNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRP-LL---------------   67 (145)
Q Consensus         5 ~~~g~~~~~~~~~~i~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~-~~---------------   67 (145)
                      ...+......+.|.+.++. +.  +........    +...++..++.++.+++.||+|||+ .+               
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  260 (352)
T cd06174         187 LSFGYYGLLTYLPLYLQEVLGL--SAAEAGLLL----SLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA  260 (352)
T ss_pred             HHhHHHHHHHHHHHHHHHhcCC--CHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            3445566667788888774 66  343333332    3666889999999999999999998 55               


Q ss_pred             --------HHHHHHhh---ccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 --------LGYTITFS---KGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 --------~~~~~~~~---~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                              .......+   ....+....+..|..|++.|++..++......++..+++.+.+++.+
T Consensus       261 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~  326 (352)
T cd06174         261 LAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLD  326 (352)
T ss_pred             HhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                    01111111   12235567889999999999999999999999999999999888764

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.60  E-value=3.2e-07  Score=71.75  Aligned_cols=88  Identities=8%  Similarity=-0.087  Sum_probs=67.2

Q ss_pred             heehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-------------------------HHHHHHhhccc---cchhhhhh
Q 036778           35 RISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-------------------------LGYTITFSKGM---VRLPNLIM   86 (145)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-------------------------~~~~~~~~~~~---~~~~~~~~   86 (145)
                      ..+++.+.+.++..++.++.|+++||+|||+.+                         ....+..+.+.   .+....+.
T Consensus        77 ~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~  156 (465)
T TIGR00894        77 LQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKII  156 (465)
T ss_pred             HhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHH
Confidence            334556688899999999999999999999988                         01111112221   14455789


Q ss_pred             cccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           87 FETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        87 ~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      +|.+|++.|++..++......++..+++.+.+++..
T Consensus       157 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~  192 (465)
T TIGR00894       157 VKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCE  192 (465)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999889999888888877653

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.60  E-value=3.1e-07  Score=72.80  Aligned_cols=109  Identities=10%  Similarity=0.034  Sum_probs=73.5

Q ss_pred             chHHHHHhHHHHHh-hhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhh-hCChHHH------------------
Q 036778            8 GSTAIAYYASSIFD-VASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK-FGRRPLL------------------   67 (145)
Q Consensus         8 g~~~~~~~~~~i~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr-~grr~~~------------------   67 (145)
                      +.+....+.+.+++ ++|.+  ......+.+    .+.....+..+++|+++|| +||||++                  
T Consensus        29 ~~y~~~~~l~~yl~~~lg~~--~~~a~~i~~----~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~  102 (489)
T PRK10207         29 GYYGVQGILAVFFVKQLGFS--QEQAFITFG----AFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSL  102 (489)
T ss_pred             HHHHHHHHHHHHHHHHcCCC--HHHHHHHHH----HHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhc
Confidence            33444445555554 58884  443343333    5556666677899999999 9999998                  


Q ss_pred             ----HH--HHHHhhccc---cchhhhhhcccCCcch--hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 ----LG--YTITFSKGM---VRLPNLIMFETFSINI--KGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 ----~~--~~~~~~~~~---~~~~~~~~~e~~p~~~--R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                          .+  .+...+.+.   .+....+++|.+|++.  |.++.++.+...++|..+++.+.|++.+
T Consensus       103 ~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~  168 (489)
T PRK10207        103 LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIAD  168 (489)
T ss_pred             cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence                01  111222222   2445688999998874  5778889999999999999988888876

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.59  E-value=1.2e-07  Score=61.23  Aligned_cols=81  Identities=20%  Similarity=0.132  Sum_probs=61.9

Q ss_pred             hhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HHHHHHhhcc---ccchhhhhhcccCCcchh
Q 036778           42 IQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LGYTITFSKG---MVRLPNLIMFETFSINIK   95 (145)
Q Consensus        42 ~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~~~~~~~~~---~~~~~~~~~~e~~p~~~R   95 (145)
                      .+.++..++.+..+++.||+|||+.+                       .......+.+   ..+....+..|.+|++.|
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   85 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEER   85 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhh
Confidence            45578889999999999999999998                       0111111111   124456788999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           96 GSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      ++..++......++..+++.+.+.+.+
T Consensus        86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~  112 (141)
T TIGR00880        86 GVALGLMSAGIALGPLLGPPLGGVLAQ  112 (141)
T ss_pred             hHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence            999999999999999998888877754

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.59  E-value=4.7e-07  Score=70.76  Aligned_cols=107  Identities=13%  Similarity=0.143  Sum_probs=67.5

Q ss_pred             HHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhh--CChHHH--------HH----H----
Q 036778           10 TAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKF--GRRPLL--------LG----Y----   70 (145)
Q Consensus        10 ~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~--grr~~~--------~~----~----   70 (145)
                      +....|.|.++++ .|.+  ........    +.+.++..++.++.|+++||+  +||+..        ..    +    
T Consensus       270 ~~~~~~~P~~l~~~~g~s--~~~~~~~~----~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~  343 (452)
T PRK11273        270 YGILDWSPTYLKEVKHFA--LDKSSWAY----FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNP  343 (452)
T ss_pred             HHHHHHHHHHHHHhcCCC--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhc
Confidence            4556688898876 5774  33333222    245577888999999999999  555422        00    0    


Q ss_pred             --------HHHhhccc---cc--hhhhhhcccCCcchhhhHHHHHHHHHHHHHHH-HHHHHHHHhh
Q 036778           71 --------TITFSKGM---VR--LPNLIMFETFSINIKGSAGSLVTFLHNNSNSL-VAYAFNFMIE  122 (145)
Q Consensus        71 --------~~~~~~~~---~~--~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~~~  122 (145)
                              ...+..+.   ++  ....+..|.+|++.|+++.|+.+....+++.+ ++.+.+++.+
T Consensus       344 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~  409 (452)
T PRK11273        344 AGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD  409 (452)
T ss_pred             ccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence                    00000111   11  11235679999999999999999888887665 5777766654

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.58  E-value=4.7e-07  Score=69.78  Aligned_cols=110  Identities=15%  Similarity=0.143  Sum_probs=75.7

Q ss_pred             hchHHHHHhHHHHH-hhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH------------------
Q 036778            7 GGSTAIAYYASSIF-DVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL------------------   67 (145)
Q Consensus         7 ~g~~~~~~~~~~i~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~------------------   67 (145)
                      .+.+.+..+.|..+ ++.|.  +.....+..+    .+.+...+..++.|+++||+|||+.+                  
T Consensus        24 ~~~~~~~~~~~~~~~~~~g~--s~~~~gl~~~----~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~   97 (400)
T PRK11646         24 LGFFVVFPLISIRFVDQLGW--AAVMVGIALG----LRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH   97 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhCC--cHHHHHHHHH----HHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc
Confidence            34455555666554 55788  4554444443    56677777789999999999999998                  


Q ss_pred             -----HHHHHHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 -----LGYTITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 -----~~~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                           ....+..+.+   ..+....++.|.+|++.|+++.++......++..+++.+.+++..
T Consensus        98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~  160 (400)
T PRK11646         98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ  160 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 1111111211   113345678899999999999999999999998888887776655

>TIGR00897 2A0118 polyol permease family

Probab=98.58  E-value=5.2e-07  Score=69.43  Aligned_cols=103  Identities=8%  Similarity=-0.083  Sum_probs=67.1

Q ss_pred             HHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH--------H---HH--------
Q 036778           10 TAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL--------L---GY--------   70 (145)
Q Consensus        10 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------~---~~--------   70 (145)
                      .....+.+.+.+++|.+  ..+...+.+    .+.++..++.++.|+++||+|||+.+        .   ..        
T Consensus        30 ~~~~~~~~~~~~~~g~s--~~~~g~~~~----~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~  103 (402)
T TIGR00897        30 GLEQGWLSPFLKALGLS--PQQSASAFT----LYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHA  103 (402)
T ss_pred             hhHHHhHHHHHHHhCCC--HHHhHHHHH----HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            33445677777888884  444444433    77799999999999999999999988        0   00        


Q ss_pred             --------HHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHH-HHHHHHHH
Q 036778           71 --------TITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSN-SLVAYAFN  118 (145)
Q Consensus        71 --------~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~-~~~~~~~~  118 (145)
                              .+..+.+..   +....+..|.+|++.|+++.|+..+...++. .+++.+..
T Consensus       104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~  163 (402)
T TIGR00897       104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSS  163 (402)
T ss_pred             cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    000011111   1122356688899999999999888777764 34444433

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11043 putative transporter; Provisional

Probab=98.57  E-value=8.6e-07  Score=67.92  Aligned_cols=100  Identities=14%  Similarity=0.090  Sum_probs=68.1

Q ss_pred             HHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HHHHHH
Q 036778           17 SSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LGYTIT   73 (145)
Q Consensus        17 ~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~~~~~   73 (145)
                      |.+.+++|.  +..+..+..+    .+.+...++.++.|+++||+|||+.+                       ....+.
T Consensus        30 ~~i~~~~~~--s~~~~g~~~s----~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l  103 (401)
T PRK11043         30 KAIQADLQT--SASAVSASLS----LFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFV  103 (401)
T ss_pred             HHHHHHHCC--CHHHHHHHHH----HHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            344567888  4544444433    77888999999999999999999998                       111112


Q ss_pred             hhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           74 FSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        74 ~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      .+.+.+   +....+..|.+|.+.|.+..+.......++..+++.+..++.+
T Consensus       104 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~  155 (401)
T PRK11043        104 QAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN  155 (401)
T ss_pred             HHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            222211   2234567899999989888888877777777777777666554

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.56  E-value=4.8e-07  Score=69.17  Aligned_cols=102  Identities=13%  Similarity=0.003  Sum_probs=69.3

Q ss_pred             hHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HHHH
Q 036778           15 YASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LGYT   71 (145)
Q Consensus        15 ~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~~~   71 (145)
                      ..|.+.+++|.+  +.......+    .+.+...++.++.|+++||+|||+.+                       ....
T Consensus        30 ~~~~i~~~~~~s--~~~~~~~~~----~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  103 (394)
T PRK11652         30 AIADMARDLNVR--EGAVQAVMA----AYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAAS  103 (394)
T ss_pred             cHHHHHHHhCCC--HHHHHHHHH----HHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence            356777888884  444444333    67788999999999999999999987                       1111


Q ss_pred             HHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           72 ITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        72 ~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      +..+.+.   .+....+..|.++.+.|++..++......++..+++.+...+.+
T Consensus       104 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~  157 (394)
T PRK11652        104 AIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT  157 (394)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1112211   13334567788998999999888877777777666666655543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=98.56  E-value=9.8e-07  Score=67.78  Aligned_cols=109  Identities=13%  Similarity=0.125  Sum_probs=74.3

Q ss_pred             chHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----------H---------
Q 036778            8 GSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----------L---------   68 (145)
Q Consensus         8 g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------~---------   68 (145)
                      +...+..+.|.++++.|.+  ........    +.+.++.+++.+..+++.||++||+..          .         
T Consensus       220 ~~~~~~~~lp~~l~~~g~s--~~~ag~~~----~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~  293 (393)
T PRK09705        220 GYASLIAWLPAFYIEIGAS--AQYSGSLL----ALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQ  293 (393)
T ss_pred             HHHHHHHHHHHHHHHcCCC--hhhhhHHH----HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccch
Confidence            4455667788888887774  43333322    266688999999999999999999876          0         


Q ss_pred             ---HHHHHhhcccc---chhhhhhcccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           69 ---GYTITFSKGMV---RLPNLIMFETF-SINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        69 ---~~~~~~~~~~~---~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                         ......+.+.+   +.......+.+ |++.|++..++.+..+.++..+++.+..++.+
T Consensus       294 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~  354 (393)
T PRK09705        294 LPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRS  354 (393)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               00011111111   22333445666 46789999999999999999899988888776

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.55  E-value=3.1e-07  Score=70.24  Aligned_cols=105  Identities=13%  Similarity=-0.004  Sum_probs=69.1

Q ss_pred             HHHhHHHHH-hhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHHH-----------H-H-------
Q 036778           12 IAYYASSIF-DVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLLG-----------Y-T-------   71 (145)
Q Consensus        12 ~~~~~~~i~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~~-----------~-~-------   71 (145)
                      ...+.|... +++|.  +..+..++.    +.+.+...+++++.|+++||+|||+++..           . .       
T Consensus        34 ~~~~l~~~i~~~~g~--s~~~~g~~~----~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~  107 (399)
T PRK05122         34 PLAVLPGYVHDQLGF--SAFLAGLVI----SLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAW  107 (399)
T ss_pred             HHHHHHHHHHHhcCc--cHHHHHHHH----HHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            334556544 55787  444444443    48889999999999999999999999800           0 0       


Q ss_pred             ------------HHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           72 ------------ITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        72 ------------~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                                  +..+.+.+   +....+..|..|.+.|+++.++......++..+++.+..++..
T Consensus       108 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~  173 (399)
T PRK05122        108 PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYH  173 (399)
T ss_pred             chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence                        01111111   2334566799999999999998777666666666666665544

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.55  E-value=5e-07  Score=71.33  Aligned_cols=110  Identities=9%  Similarity=-0.009  Sum_probs=77.8

Q ss_pred             hchHHHHHhHHHHHhh---hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhh-hCChHHH---------------
Q 036778            7 GGSTAIAYYASSIFDV---ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK-FGRRPLL---------------   67 (145)
Q Consensus         7 ~g~~~~~~~~~~i~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr-~grr~~~---------------   67 (145)
                      .+.+.+..++|.++.+   +|.  +......+.+    .+.++..++.+++|+++|| +|||+++               
T Consensus        24 ~~~~~~~~~L~~yl~~~~~lg~--s~~~ag~~~~----~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~   97 (475)
T TIGR00924        24 FSYYGMQGILAVYLVQQAGLGF--SQEQAFIIFG----AYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLA   97 (475)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHH----HHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            3455666677777764   566  4444444444    7778899999999999999 8999987               


Q ss_pred             --------HHHHHHhhccc---cchhhhhhcccCCcch---hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 --------LGYTITFSKGM---VRLPNLIMFETFSINI---KGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 --------~~~~~~~~~~~---~~~~~~~~~e~~p~~~---R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                              .......+.+.   .+....+.+|.+|++.   |+++.++.+...++|..+++.+.+++.+
T Consensus        98 ~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~  166 (475)
T TIGR00924        98 MSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE  166 (475)
T ss_pred             hcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence                    01111112221   2444578889998764   8889999999999999999988887754

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=98.54  E-value=6.6e-08  Score=75.83  Aligned_cols=97  Identities=8%  Similarity=-0.195  Sum_probs=68.4

Q ss_pred             HHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----------------------------
Q 036778           16 ASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----------------------------   67 (145)
Q Consensus        16 ~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------------------------   67 (145)
                      .|.+.+++|.+  .....++.    +.+.++..++.++.|+++||+|||+++                            
T Consensus        52 ~~~i~~~~~~s--~~~~g~~~----s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l  125 (467)
T PRK09556         52 QNDMISTYGLS--TTELGMIG----LGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLM  125 (467)
T ss_pred             hHHHHHhcCCC--HHHHHHHH----HHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence            57777888884  44444443    478899999999999999999999976                            


Q ss_pred             HHHHHHhhc---cccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036778           68 LGYTITFSK---GMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFN  118 (145)
Q Consensus        68 ~~~~~~~~~---~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~  118 (145)
                      ....+..+.   ...+....+++|.+|++.|++++|+......+|..+++.+..
T Consensus       126 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~  179 (467)
T PRK09556        126 IALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVAL  179 (467)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHH
Confidence            000000111   112445578999999999999999988777777777665544

>TIGR00897 2A0118 polyol permease family

Probab=98.54  E-value=9e-07  Score=68.09  Aligned_cols=111  Identities=12%  Similarity=-0.043  Sum_probs=73.3

Q ss_pred             hhhchHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHH--------HH--HHH-
Q 036778            5 TLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLL--------GY--TIT-   73 (145)
Q Consensus         5 ~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~--------~~--~~~-   73 (145)
                      +..+......|.|.+.++.|.+  ........+    .+.++..++.+..++++||+|||+.+.        +.  ... 
T Consensus       234 ~~~~~~~~~~~~p~~~~~~g~s--~~~~~~~~~----~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~  307 (402)
T TIGR00897       234 NTIGLFGFAVFLPMFVAELGFS--TSEWLQIWG----TFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYY  307 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCC--hhHHHHHHH----HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            3345566677889999888884  443333222    556889999999999999999887540        00  000 


Q ss_pred             ------------------hhcccc--chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           74 ------------------FSKGMV--RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        74 ------------------~~~~~~--~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                                        .+.+.+  ........|..| +.|+++.|+.+....+++.+++.+...+.+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~  375 (402)
T TIGR00897       308 IPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIG  375 (402)
T ss_pred             HHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                              000000  011234567655 589999999999999999999988877764

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.53  E-value=7.6e-07  Score=70.11  Aligned_cols=104  Identities=13%  Similarity=0.066  Sum_probs=78.3

Q ss_pred             HHhHHHHHhhhCCCCCcch-hhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------H
Q 036778           13 AYYASSIFDVASNKLSTKF-GNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------L   68 (145)
Q Consensus        13 ~~~~~~i~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~   68 (145)
                      .+-.|.+.+++|++  ..+ ...+    ...+.....+..+++|+++||+|-|+++                       .
T Consensus        46 s~a~p~L~~elglT--~~qv~G~I----~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~  119 (511)
T TIGR00806        46 SFITPYLLTVLNFT--EETVTNEI----IPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQ  119 (511)
T ss_pred             HHHHHHHHHHcCCC--HHHhcchH----HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567777888985  333 3333    3488899999999999999999999998                       1


Q ss_pred             HHHHHhhcccc--chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           69 GYTITFSKGMV--RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        69 ~~~~~~~~~~~--~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      +..++++.+-+  .....++...+|++.|+++.++......+|.++++.+.+++..
T Consensus       120 i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s  175 (511)
T TIGR00806       120 LMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVT  175 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            12222222211  2455788999999999999999999999999999999988555

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.53  E-value=4.2e-07  Score=71.39  Aligned_cols=104  Identities=8%  Similarity=0.012  Sum_probs=73.6

Q ss_pred             HHhHHHHHh-hhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------H
Q 036778           13 AYYASSIFD-VASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------L   68 (145)
Q Consensus        13 ~~~~~~i~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~   68 (145)
                      ..+.|.+++ +.|.+  ......+.    +...++.+++.++.+++.||+|||+.+                       .
T Consensus       295 ~~~lp~~l~~~~g~~--~~~~g~~~----~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (496)
T PRK03893        295 QALLPTYLKTDLGYD--PHTVANVL----FFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWV  368 (496)
T ss_pred             HHHHHHHHHhhcCCC--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHH
Confidence            346788885 57874  44333333    366788999999999999999999987                       0


Q ss_pred             H--HHH---HhhccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           69 G--YTI---TFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        69 ~--~~~---~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      .  ..+   ..+.+..+....+..|.+|.+.|++++++.+....++..+++.+.+++.+
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~  427 (496)
T PRK03893        369 LGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQ  427 (496)
T ss_pred             HHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence            0  000   01112223444678899999999999999999888988888888777655

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.52  E-value=8e-07  Score=68.38  Aligned_cols=108  Identities=17%  Similarity=0.013  Sum_probs=79.1

Q ss_pred             HHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------H
Q 036778           12 IAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------L   68 (145)
Q Consensus        12 ~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~   68 (145)
                      ..-.+|.+-+++++  +......+++    .|.++..++.++...+.||+.||+++                       .
T Consensus        32 ~~gLLp~iA~dl~v--s~~~aG~lis----~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll  105 (394)
T COG2814          32 PVGLLPPIAADLGV--SEGAAGQLIT----AYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLL  105 (394)
T ss_pred             HHhchHHHHHHcCC--CHHHHHHHHH----HHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence            34467888889999  4544444444    88899999999999999999999998                       1


Q ss_pred             HHHHHhh---ccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh---ccC
Q 036778           69 GYTITFS---KGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE---WST  125 (145)
Q Consensus        69 ~~~~~~~---~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  125 (145)
                      ..++..+   ....++...+..++.|+++|++++++......+...++.-+..++-+   |+.
T Consensus       106 ~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~  168 (394)
T COG2814         106 LARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRA  168 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHH
Confidence            1111111   11225566888999999999999999998887777777666666655   554

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.52  E-value=4.2e-07  Score=68.52  Aligned_cols=109  Identities=15%  Similarity=0.176  Sum_probs=69.5

Q ss_pred             chHHHHHhHHHHHh-hhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHH---------H--HH----
Q 036778            8 GSTAIAYYASSIFD-VASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLL---------G--YT----   71 (145)
Q Consensus         8 g~~~~~~~~~~i~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~---------~--~~----   71 (145)
                      .......+.|.+.+ +.|.+  ........    +...+...++.++.+++.||+|||+.+.         .  ..    
T Consensus       234 ~~~~~~~~~~~~~~~~~g~~--~~~~~~~~----~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~  307 (394)
T TIGR00883       234 TFYLITTYLPTYLTQTLGLS--ANSALLVL----MLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL  307 (394)
T ss_pred             HHHHHHHHHHHHHHHhcCCC--hhHHHHHH----HHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445567788874 46774  43333222    2556788889999999999999999760         0  00    


Q ss_pred             ------------HHhhc---cccchhhhhhcccCCcchhhhHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 036778           72 ------------ITFSK---GMVRLPNLIMFETFSINIKGSAGSLVTFL-HNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        72 ------------~~~~~---~~~~~~~~~~~e~~p~~~R~~~~~~~~~~-~~~~~~~~~~~~~~~~~  122 (145)
                                  ...+.   ...+....+.+|.+|++.|+++.++.... ..++..+++.+.+++.+
T Consensus       308 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~  374 (394)
T TIGR00883       308 DSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVA  374 (394)
T ss_pred             cCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence                        00000   11133456788999999999999986543 45666677777776654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.50  E-value=5.2e-07  Score=69.04  Aligned_cols=109  Identities=10%  Similarity=0.055  Sum_probs=70.0

Q ss_pred             hhhhhchHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCCh---HHH------------
Q 036778            3 MQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRR---PLL------------   67 (145)
Q Consensus         3 ~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr---~~~------------   67 (145)
                      +......+.+..|.|+++++.|.+  .. ......       +....+.+..+++.||..||   +..            
T Consensus       202 ~~~~~~~~~~~~wlp~~L~~~g~s--~~-~~~~~~-------l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~  271 (368)
T TIGR00903       202 GFGVALFDNLAIWLEAALRPAGLE--DI-AGDAVA-------LAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFF  271 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCC--hH-HHHHHH-------HHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            344556677788999999887774  22 222222       33344555567888887654   222            


Q ss_pred             ------------HHHHHHhhc---cccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           68 ------------LGYTITFSK---GMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        68 ------------~~~~~~~~~---~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                                  .......+.   ...+..+.+.+|.+|++.|+++.|+.+..+++++.+++...+.+.
T Consensus       272 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       272 LALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             HHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence                        000000000   011335578999999999999999999999999988888877654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.49  E-value=3.5e-07  Score=71.12  Aligned_cols=107  Identities=17%  Similarity=0.146  Sum_probs=71.0

Q ss_pred             HHHHHhHHHHHh-hhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhh--CC-hHHH------------------
Q 036778           10 TAIAYYASSIFD-VASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKF--GR-RPLL------------------   67 (145)
Q Consensus        10 ~~~~~~~~~i~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~--gr-r~~~------------------   67 (145)
                      ..+..+.|.+++ +.|.+  ........    +.+.++..++.++.+++.||+  ++ |...                  
T Consensus       260 ~~~~~~~p~~l~~~~g~s--~~~a~~~~----~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~  333 (434)
T PRK11663        260 AAINDWGNLYMSETLGVD--LVTANSAV----SMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP  333 (434)
T ss_pred             HHHHHHHHHHHHhccCCC--HHHHHHHH----HHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc
Confidence            344556787875 46774  44333332    256688999999999999998  33 3321                  


Q ss_pred             -----HHHHHHhhcc---ccc--hhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 -----LGYTITFSKG---MVR--LPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 -----~~~~~~~~~~---~~~--~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                           ......+..+   .++  ....+.+|.+|++.|+++.|+.+..+.++..+++...+++.+
T Consensus       334 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~  398 (434)
T PRK11663        334 FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLE  398 (434)
T ss_pred             cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence                 0000001111   111  223456899999999999999999999999999999888876

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.48  E-value=6.2e-07  Score=76.98  Aligned_cols=86  Identities=17%  Similarity=0.145  Sum_probs=63.6

Q ss_pred             ehhhhhhhhhhhhHHHHHHHHHhhhCChHHH--------------------------HHHHHHhhc---cccchhhhhhc
Q 036778           37 SILRHIQSLFQVPVVGSSVLLADKFGRRPLL--------------------------LGYTITFSK---GMVRLPNLIMF   87 (145)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------------------------~~~~~~~~~---~~~~~~~~~~~   87 (145)
                      +++.+++.+...++++++|+++||+|||+++                          ++..+..+.   ...+....+++
T Consensus        50 ~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~  129 (1146)
T PRK08633         50 AIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIP  129 (1146)
T ss_pred             HHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhH
Confidence            3455588888999999999999999999987                          001111111   11244557899


Q ss_pred             ccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           88 ETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        88 e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      |++|.+.|++++++......+|..+++.+..++..
T Consensus       130 ~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~  164 (1146)
T PRK08633        130 ELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE  164 (1146)
T ss_pred             HhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888888887777766543

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.47  E-value=8e-07  Score=67.02  Aligned_cols=106  Identities=9%  Similarity=-0.085  Sum_probs=64.6

Q ss_pred             HHHHhHHHHH-hhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----------------------
Q 036778           11 AIAYYASSIF-DVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----------------------   67 (145)
Q Consensus        11 ~~~~~~~~i~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------------------   67 (145)
                      ......|.++ +++|.  +..+..++.+    .+.+...+..++.|.++||+||||.+                      
T Consensus        15 ~~~~~l~~~l~~~~g~--s~~~~g~~~~----~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~   88 (375)
T TIGR00899        15 LQFPTLSLFLSEEVRA--RPAMIGLFYT----GSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYF   88 (375)
T ss_pred             HHhhHHHHHHHcccCC--CHHHHHHHHH----HHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHH
Confidence            3334455544 56888  4444444433    67788888899999999999988864                      


Q ss_pred             --HHHHHHhhc---cccchhhhhhcccCCcchhhhH--HHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 --LGYTITFSK---GMVRLPNLIMFETFSINIKGSA--GSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 --~~~~~~~~~---~~~~~~~~~~~e~~p~~~R~~~--~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                        .......+.   ...+....+..|..|++.|.++  .+.......++..+++.+..++.+
T Consensus        89 ~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~  150 (375)
T TIGR00899        89 LLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL  150 (375)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH
Confidence              111111111   1123344566787787777654  456555666777777776666654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.44  E-value=2.2e-06  Score=66.50  Aligned_cols=102  Identities=4%  Similarity=-0.121  Sum_probs=72.0

Q ss_pred             HHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------HH------------
Q 036778           13 AYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------LG------------   69 (145)
Q Consensus        13 ~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------~~------------   69 (145)
                      ....|.+.+++|.+  ..+..++.    +.+.++..++++..+++.||+|||+.+           ..            
T Consensus        23 ~~l~~~~~~~~~~s--~~~~g~l~----s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~   96 (410)
T TIGR00885        23 NPMVPQFQQAFTLT--AFQAALVQ----SAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTL   96 (410)
T ss_pred             HHHHHHHHHHhCCC--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHH
Confidence            35567777778884  44444333    478899999999999999999999988           00            


Q ss_pred             ---HHHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036778           70 ---YTITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFM  120 (145)
Q Consensus        70 ---~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~  120 (145)
                         ..+..+.+.+   +....+..|+.|++.|++..++.+....+|..+++.+.+.+
T Consensus        97 ~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l  153 (410)
T TIGR00885        97 FLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQL  153 (410)
T ss_pred             HHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0001111111   22235777888999999999999999999988888777655

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00896 CynX cyanate transporter

Probab=98.43  E-value=1.2e-06  Score=66.12  Aligned_cols=105  Identities=15%  Similarity=0.113  Sum_probs=71.5

Q ss_pred             HHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----------------------
Q 036778           10 TAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----------------------   67 (145)
Q Consensus        10 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------------------   67 (145)
                      .......|.+.+++|.+  ..+..++.+    .+.++..++.++.++++||+|||+.+                      
T Consensus        17 ~~~~~~lp~l~~~~~~s--~~~~g~~~s----~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~l   90 (355)
T TIGR00896        17 TSVGPLLPQIRSALGMS--FSVAGLLTA----LPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIRSAPGTALL   90 (355)
T ss_pred             ccCcccHHHHHHHhCCC--HHHHHHHHH----HHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            34455788889999994  544444444    78899999999999999999999998                      


Q ss_pred             HHHHHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           68 LGYTITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        68 ~~~~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                      ....+..+.+.   .+....+..|.+| +.|++..++......++..+++.+.+.+.
T Consensus        91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~  146 (355)
T TIGR00896        91 FAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLA  146 (355)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00011111111   1233356678886 57999999988877777777666655443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.43  E-value=7.4e-07  Score=66.77  Aligned_cols=102  Identities=14%  Similarity=0.017  Sum_probs=67.4

Q ss_pred             HHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------
Q 036778           11 AIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------   67 (145)
Q Consensus        11 ~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------   67 (145)
                      ....+.|.+.+++|.+  .....++.+    ++.++..++.++.|+++||+|||+.+                       
T Consensus        21 ~~~~~~~~~~~~~~~s--~~~~g~~~s----~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (377)
T TIGR00890        21 TWTLLAPPLGRYFGVG--VTAVAIWFT----LLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAAL   94 (377)
T ss_pred             hhhhHHHHHHHHhCCC--HHHHHHHHH----HHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHH
Confidence            3455778888889984  544444443    78899999999999999999999987                       


Q ss_pred             HHHHHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036778           68 LGYTITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNF  119 (145)
Q Consensus        68 ~~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~  119 (145)
                      .......+.+.+   +....+..|.+| +.|++..++......++..+.+.....
T Consensus        95 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~  148 (377)
T TIGR00890        95 YLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITS  148 (377)
T ss_pred             HHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHH
Confidence            111111122211   223345667777 569999999887776766554444433

>PRK09952 shikimate transporter; Provisional

Probab=98.40  E-value=4.1e-06  Score=65.33  Aligned_cols=76  Identities=17%  Similarity=0.004  Sum_probs=53.8

Q ss_pred             hhhhhhhHHHHHHHHHhhhCChHHH-------------------H------------HHHHHhhcccc---chhhhhhcc
Q 036778           43 QSLFQVPVVGSSVLLADKFGRRPLL-------------------L------------GYTITFSKGMV---RLPNLIMFE   88 (145)
Q Consensus        43 ~~~~~~~~~~~~~~l~Dr~grr~~~-------------------~------------~~~~~~~~~~~---~~~~~~~~e   88 (145)
                      ..++..++.++.|+++||+|||+.+                   .            ..++..+.+.+   +....+++|
T Consensus        73 ~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e  152 (438)
T PRK09952         73 GFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVE  152 (438)
T ss_pred             HHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH
Confidence            3456778889999999999999998                   0            01112233322   344578999


Q ss_pred             cCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036778           89 TFSINIKGSAGSLVTFLHNNSNSLVAYAFN  118 (145)
Q Consensus        89 ~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~  118 (145)
                      .+|++.|++..+.......+|..++..+..
T Consensus       153 ~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~  182 (438)
T PRK09952        153 SAPKNKKAFYSSGVQVGYGVGLLLSTGLVS  182 (438)
T ss_pred             hCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988888777777766654443

>PRK10133 L-fucose transporter; Provisional

Probab=98.37  E-value=4.1e-06  Score=65.47  Aligned_cols=104  Identities=6%  Similarity=-0.143  Sum_probs=70.3

Q ss_pred             hHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------HH--------
Q 036778            9 STAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------LG--------   69 (145)
Q Consensus         9 ~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------~~--------   69 (145)
                      ......+.|.+-++++.+  .....+...    .+.++..++++..+.++||+|||+++           ..        
T Consensus        42 ~~~~~~~~p~i~~~~~~s--~~~~gl~~~----~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~  115 (438)
T PRK10133         42 NNLNDILLPQFQQAFTLT--NFQAGLIQS----AFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM  115 (438)
T ss_pred             HHHHHHHHHHHHHHhCCC--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            355666788887779984  444444433    77899999999999999999999998           00        


Q ss_pred             -------HHHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036778           70 -------YTITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFN  118 (145)
Q Consensus        70 -------~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~  118 (145)
                             .++..+.+.+   +....++.|..|.+.|...+++.+....+|..+++.+..
T Consensus       116 ~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~  174 (438)
T PRK10133        116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   0111111111   223456677777777777788888887888777776543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.36  E-value=2.4e-06  Score=64.08  Aligned_cols=107  Identities=17%  Similarity=0.143  Sum_probs=70.8

Q ss_pred             HHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhC-ChH-HH-------------------
Q 036778           10 TAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFG-RRP-LL-------------------   67 (145)
Q Consensus        10 ~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~g-rr~-~~-------------------   67 (145)
                      .....+.|.++++ .|.+  ........    +...+...++.++.+++.||.. ||+ ..                   
T Consensus       233 ~~~~~~~~~~~~~~~g~~--~~~~~~~~----~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (379)
T TIGR00881       233 TGILDWSPLYLTQEKGFS--KEKASWAF----TLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNP  306 (379)
T ss_pred             HHHHHHHHHHHHHHhCCC--HHHHHHHH----HHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCc
Confidence            3445566777654 6773  43333332    2566888999999999999863 332 22                   


Q ss_pred             -------HHHHHHhh---ccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 -------LGYTITFS---KGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 -------~~~~~~~~---~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                             ....+..+   .+..+..+.+..|.+|++.|+++.++.+....++..+++.+.+++.+
T Consensus       307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  371 (379)
T TIGR00881       307 AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLAD  371 (379)
T ss_pred             chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence                   00001111   11112334678899999999999999999999999999998888765

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.36  E-value=2.5e-06  Score=66.74  Aligned_cols=92  Identities=16%  Similarity=-0.015  Sum_probs=60.6

Q ss_pred             HHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------HHH-----------
Q 036778           13 AYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------LGY-----------   70 (145)
Q Consensus        13 ~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------~~~-----------   70 (145)
                      .+..|.+.++ |.  +.....+..    +...++..+++++.|+++||+|||+++           ...           
T Consensus        49 ~~~~p~l~~~-g~--s~~~~g~~~----~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~  121 (452)
T PRK11273         49 ALAMPYLVEQ-GF--SRGDLGFAL----SGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIA  121 (452)
T ss_pred             HHhhHHHHHc-CC--CHHHHHHHH----HHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHH
Confidence            3456666666 77  344444333    377788999999999999999999988           000           


Q ss_pred             -----HHHhh--cc-ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHH
Q 036778           71 -----TITFS--KG-MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNS  111 (145)
Q Consensus        71 -----~~~~~--~~-~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~  111 (145)
                           .+..+  .+ ..+.......|.+|++.|++++++.+....+++.
T Consensus       122 ~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~  170 (452)
T PRK11273        122 VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG  170 (452)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhh
Confidence                 00001  11 1122335677899999999999998777776653

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.35  E-value=4e-06  Score=66.06  Aligned_cols=94  Identities=15%  Similarity=0.009  Sum_probs=64.4

Q ss_pred             hhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------H--H---------------HHHH
Q 036778           22 VASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------L--G---------------YTIT   73 (145)
Q Consensus        22 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------~--~---------------~~~~   73 (145)
                      ++++  +..+..++.+    ++.+...+..+..|+++||+|.|+++           .  .               ..+.
T Consensus        64 ~~~l--s~~q~g~l~a----i~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l  137 (462)
T PRK15034         64 GFNF--TTDQLFLLTA----LPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALL  137 (462)
T ss_pred             hcCC--CHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHH
Confidence            4677  4444444433    77788888888889999999999887           0  0               0111


Q ss_pred             hhc--cccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           74 FSK--GMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        74 ~~~--~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                      .+.  +..+.....+++.||++.|+++.|+....+++|..+.+.+.|.+.
T Consensus       138 ~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i  187 (462)
T PRK15034        138 CGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI  187 (462)
T ss_pred             HHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            111  111334567889999999999999998777888777766666533

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=98.34  E-value=1.6e-06  Score=68.04  Aligned_cols=104  Identities=15%  Similarity=0.101  Sum_probs=70.4

Q ss_pred             HHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----------------------HH
Q 036778           12 IAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----------------------LG   69 (145)
Q Consensus        12 ~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------------------~~   69 (145)
                      ...+.|.+.+++|.+  .....++.+    .+.+...++.++.|+++||+|||+++                      ..
T Consensus        38 ~~~~~~~i~~~~g~s--~~~~~~~~s----~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~  111 (455)
T TIGR00892        38 VTVFFKELQQIFQAT--YSETAWISS----IMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELY  111 (455)
T ss_pred             hhhhHHHHHHHhCcc--hhHHHHHHH----HHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHH
Confidence            345677788888885  333333333    55566777889999999999999998                      11


Q ss_pred             --HHHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           70 --YTITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        70 --~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                        ..+..+.+.+   +....++.+.+| +.|+++.++......++..+++.+.+.+..
T Consensus       112 ~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~  168 (455)
T TIGR00892       112 LTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFE  168 (455)
T ss_pred             HHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence              1112222222   333456678886 789999999998888888887777766554

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=98.34  E-value=3.9e-06  Score=64.19  Aligned_cols=104  Identities=10%  Similarity=0.002  Sum_probs=67.2

Q ss_pred             HHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------
Q 036778           11 AIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------   67 (145)
Q Consensus        11 ~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------   67 (145)
                      ....+.|.+.++.|.+ .....       .+.+.++..++.+..+++.||+|||+.+                       
T Consensus       234 ~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (399)
T PRK05122        234 TIATFITLYYAARGWD-GAALA-------LTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMA  305 (399)
T ss_pred             HHHHHHHHHHHHcccc-cchHH-------HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            3444566666665553 22111       1244577888899999999999999877                       


Q ss_pred             HHHHHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 LGYTITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 ~~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      .......+.+.+   +.......|..|++.|+++.++.+....++..+++.+..++.+
T Consensus       306 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~  363 (399)
T PRK05122        306 LIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVAS  363 (399)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            001111111111   2223456688999999999999998888888777777776654

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.34  E-value=1.7e-06  Score=66.76  Aligned_cols=107  Identities=10%  Similarity=-0.030  Sum_probs=72.6

Q ss_pred             HHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----H---H-H--H--------
Q 036778           10 TAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----L---G-Y--T--------   71 (145)
Q Consensus        10 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----~---~-~--~--------   71 (145)
                      .......|.+.++.+.  ++.+..++.    +.+.+...+++++.|+++||+|||+++    .   . +  .        
T Consensus        34 ~~~~~~~~~~~~~~~~--s~~~~g~~~----~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~  107 (417)
T PRK10489         34 GLLGVAVPVQIQMMTG--STLQVGLSV----TLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPE  107 (417)
T ss_pred             HHHHHHHHHHHHHHHC--CHHHHHHHH----HHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCC
Confidence            4445567777788777  444444433    377789999999999999999999977    0   0 0  0        


Q ss_pred             ----------HHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           72 ----------ITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        72 ----------~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                                +..+.+.   .+....+..|..|++.|+++.++......++..+++.+...+..
T Consensus       108 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~  171 (417)
T PRK10489        108 PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA  171 (417)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence                      0000000   12223567799999999999999888888888777777666543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.33  E-value=8.5e-06  Score=61.38  Aligned_cols=113  Identities=12%  Similarity=-0.053  Sum_probs=66.7

Q ss_pred             hhchHHHHHhHHHHHhhhCCCCCcchhhhhee-hhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------
Q 036778            6 LGGSTAIAYYASSIFDVASNKLSTKFGNFRIS-ILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------   67 (145)
Q Consensus         6 ~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------   67 (145)
                      ....+.+.+..+.+.++...+.+......+.+ ...+...+...+++++.|+++||+|||+.+                 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~   85 (394)
T TIGR00883         6 WFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLL   85 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhC
Confidence            34445566666666666433112222211111 111122334456889999999999999988                 


Q ss_pred             --H----------HH--HHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036778           68 --L----------GY--TITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFN  118 (145)
Q Consensus        68 --~----------~~--~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~  118 (145)
                        .          +.  ++..+.+.   .+....+++|.+|.+.|++..++......+|..+++.+..
T Consensus        86 ~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~  153 (394)
T TIGR00883        86 PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVL  153 (394)
T ss_pred             CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence              0          00  01111111   1334568899999999999999988877777777665543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=98.33  E-value=1.2e-07  Score=73.74  Aligned_cols=74  Identities=12%  Similarity=0.120  Sum_probs=58.4

Q ss_pred             hhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HHHHHHhhcccc---chhhhhhcccCCcc
Q 036778           40 RHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LGYTITFSKGMV---RLPNLIMFETFSIN   93 (145)
Q Consensus        40 ~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~~~~~~~~~~~---~~~~~~~~e~~p~~   93 (145)
                      ...+.+.+++.++++|++.||++||+++                       .+.+.+.+.|..   ++...+++|+||..
T Consensus        74 ~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~  153 (493)
T KOG1330|consen   74 QTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDD  153 (493)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcch
Confidence            3377799999999999999999999998                       233333343333   67778999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHH
Q 036778           94 IKGSAGSLVTFLHNNSNSLV  113 (145)
Q Consensus        94 ~R~~~~~~~~~~~~~~~~~~  113 (145)
                      .|++.+++-+....+|..++
T Consensus       154 ~Rs~~~~ify~~ipvGsglG  173 (493)
T KOG1330|consen  154 KRSRVLGIFYFAIPVGSGLG  173 (493)
T ss_pred             hhhHHHHHhhhhccccccee
Confidence            99999999998777765443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.33  E-value=2.2e-06  Score=68.16  Aligned_cols=84  Identities=23%  Similarity=0.202  Sum_probs=61.8

Q ss_pred             ehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HHHHHHhhcccc---chhhhhhcccC
Q 036778           37 SILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LGYTITFSKGMV---RLPNLIMFETF   90 (145)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~~~~~~~~~~~---~~~~~~~~e~~   90 (145)
                      +++++...++..+++++.+.++|++|||+.+                       ...++..+.+.+   .+...|++|+-
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEia  171 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIA  171 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcC
Confidence            3555688899999999999999999999988                       222223333333   34568999999


Q ss_pred             CcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           91 SINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        91 p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                      |++.|+.-.++......+|..++ ++..+..
T Consensus       172 p~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~  201 (513)
T KOG0254|consen  172 PAHIRGTLVSLYQLFITIGILLG-YCINYGT  201 (513)
T ss_pred             ChhhhHHHHHHHHHHHHHHHHHH-HHHhhhh
Confidence            99999999999887777555444 4444444

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.33  E-value=1.8e-06  Score=67.18  Aligned_cols=97  Identities=14%  Similarity=-0.053  Sum_probs=64.6

Q ss_pred             HHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------HHH--------------
Q 036778           16 ASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------LGY--------------   70 (145)
Q Consensus        16 ~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------~~~--------------   70 (145)
                      .|.+. +.|.  +..+..+..+    ++.++..++.++.|+++||+|||+.+           ...              
T Consensus        50 ~p~~~-~~g~--s~~~~g~~~~----~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  122 (438)
T TIGR00712        50 MPYLV-EQGF--SKGELGFALS----AISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMF  122 (438)
T ss_pred             hHHHH-HcCC--CHhHhHHHHH----HHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHH
Confidence            45444 3576  4444444433    77799999999999999999999977           000              


Q ss_pred             --HHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036778           71 --TITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNF  119 (145)
Q Consensus        71 --~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~  119 (145)
                        .+..+.+.   .+.....+.|.+|++.|++++++.+....+++.+.+.+...
T Consensus       123 ~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~  176 (438)
T TIGR00712       123 VLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLL  176 (438)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHH
Confidence              00001111   12234577789999999999999988888877777655443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.32  E-value=8.9e-07  Score=67.64  Aligned_cols=86  Identities=19%  Similarity=0.183  Sum_probs=63.7

Q ss_pred             ehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-------------------H-HH---HHHhhc--cccchhhhhhcccCC
Q 036778           37 SILRHIQSLFQVPVVGSSVLLADKFGRRPLL-------------------L-GY---TITFSK--GMVRLPNLIMFETFS   91 (145)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-------------------~-~~---~~~~~~--~~~~~~~~~~~e~~p   91 (145)
                      +++-+.+.+.+++.++..|.++||.|||.++                   + .+   ++..+.  +--.+.-++++|+.+
T Consensus        71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV~s  150 (451)
T KOG2615|consen   71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAIISDVVS  150 (451)
T ss_pred             hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHhhcC
Confidence            4455588999999999999999999999998                   1 00   111111  111445689999999


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           92 INIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        92 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      .+.|+.+++.......+|..++|.+..++..
T Consensus       151 ek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  151 EKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             hhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            9999999999888777777777766655543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.30  E-value=7e-06  Score=64.18  Aligned_cols=108  Identities=14%  Similarity=0.063  Sum_probs=73.2

Q ss_pred             hHHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHH---------HH--------
Q 036778            9 STAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLL---------GY--------   70 (145)
Q Consensus         9 ~~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~---------~~--------   70 (145)
                      .+...++.|.++++ .|.  ++.......    +...++..++.++.+++.||+|||+.+.         ..        
T Consensus       271 ~~~~~~~~p~~~~~~~g~--s~~~~g~~~----~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~  344 (485)
T TIGR00711       271 LYGSFYLLPLYLQQVLGY--TALQAGLHI----LPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTP  344 (485)
T ss_pred             HHHHHHHHHHHHHHhcCC--CHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCC
Confidence            34455677888876 677  444333332    2566888999999999999999999870         00        


Q ss_pred             ----------HHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           71 ----------TITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        71 ----------~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                                ....+.+.+   +.......|..|++.|+++.++.+....+++.+++.+...+.+
T Consensus       345 ~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       345 DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      001111111   1122445677899999999999999999999998888776654

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.30  E-value=7.8e-06  Score=61.04  Aligned_cols=103  Identities=11%  Similarity=-0.014  Sum_probs=73.3

Q ss_pred             HhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHHH-----------------------
Q 036778           14 YYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLLG-----------------------   69 (145)
Q Consensus        14 ~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~~-----------------------   69 (145)
                      .+.|.+.++ .|.+  ........    +...++.+++.+..+++.||.+||+.+..                       
T Consensus       232 ~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (365)
T TIGR00900       232 ALFPYVQSKYLGRG--STHYGWVL----AAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFL  305 (365)
T ss_pred             HHhHHHHHHHhCCc--hHHHHHHH----HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHH
Confidence            566777776 6773  44333332    35668888999999999999999988700                       


Q ss_pred             -HHHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           70 -YTITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        70 -~~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                       .....+.+.   .+....+..|..|++.|++..++.+....++..+++.+.+++.+
T Consensus       306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             000011111   13445688899999999999999999999999999988887764

>PRK15011 sugar efflux transporter B; Provisional

Probab=98.28  E-value=8.5e-06  Score=62.54  Aligned_cols=102  Identities=14%  Similarity=0.089  Sum_probs=65.7

Q ss_pred             HhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHH--------HHH-------------
Q 036778           14 YYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLL--------GYT-------------   71 (145)
Q Consensus        14 ~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~--------~~~-------------   71 (145)
                      .+.|.+.++ .|.+  ........+    ...++.+++.++.+++.||+|||+.+.        .+.             
T Consensus       237 ~~~p~~l~~~~~~~--~~~~g~~~~----~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  310 (393)
T PRK15011        237 INMPLFIINELHLP--EKLAGVMMG----TAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLG  310 (393)
T ss_pred             HHHHHHHHHHcCCC--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            456766654 6774  443333322    344666778899999999999998770        000             


Q ss_pred             --HHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           72 --ITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        72 --~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                        ...+..   ..+....+..|.+|.+ |+++.++.+....+|..+++.+.+.+.+
T Consensus       311 ~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~  365 (393)
T PRK15011        311 LQLLNAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAE  365 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              000000   0122335678999864 9999999888888888888888877765

>PRK03699 putative transporter; Provisional

Probab=98.25  E-value=9.1e-06  Score=62.35  Aligned_cols=108  Identities=6%  Similarity=-0.113  Sum_probs=71.1

Q ss_pred             chHHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-------------------
Q 036778            8 GSTAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-------------------   67 (145)
Q Consensus         8 g~~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-------------------   67 (145)
                      +...+..|.|.+.++ .|.  +........+    .++++..++.+..+++.||++||+.+                   
T Consensus       220 ~~~~~~~~~p~~l~~~~g~--s~~~~~~~~~----~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~  293 (394)
T PRK03699        220 AQLTFISWVPEYAQKKFGM--SLEDAGNLVS----NFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDD  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHcCC--ChHHhhHHHH----HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCC
Confidence            334556788888865 687  4444443333    66788999999999999999999987                   


Q ss_pred             ----HHHHHHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 ----LGYTITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 ----~~~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                          .......+..   ..+....+..|..|. .+++..+.....+.+|..+++.+.+++.+
T Consensus       294 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~  354 (394)
T PRK03699        294 PSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVA  354 (394)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence                0000111111   112233455666654 35677888888888999999998888865

>PRK12382 putative transporter; Provisional

Probab=98.24  E-value=7.3e-06  Score=62.62  Aligned_cols=107  Identities=12%  Similarity=0.062  Sum_probs=71.1

Q ss_pred             chHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH--------------------
Q 036778            8 GSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL--------------------   67 (145)
Q Consensus         8 g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------------------   67 (145)
                      +...+..+.|.++++.+.+ ....   .    ...+.++.+++.+..+++.||+|||+.+                    
T Consensus       231 ~~~~~~~~~~~~~~~~~~~-~~~~---~----~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~  302 (392)
T PRK12382        231 GFAVIGTFVSLYFASKGWA-MAGF---T----LTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTA  302 (392)
T ss_pred             HHhHHHHHHHHHHHhcCCc-hhHH---H----HHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccH
Confidence            3344555667777766653 2111   1    1234467788889999999999998877                    


Q ss_pred             ---HHHHHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 ---LGYTITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 ---~~~~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                         .......+.+.   .+.......|.+|++.|++..++.+....++..+++.+.+++.+
T Consensus       303 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~  363 (392)
T PRK12382        303 WVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLAT  363 (392)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               00111111111   12333566788999999999999999999999999988887764

>PRK03633 putative MFS family transporter protein; Provisional

Probab=98.24  E-value=1.5e-05  Score=60.84  Aligned_cols=106  Identities=10%  Similarity=-0.049  Sum_probs=70.6

Q ss_pred             HHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----------HH----------H
Q 036778           11 AIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----------LG----------Y   70 (145)
Q Consensus        11 ~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------~~----------~   70 (145)
                      ....+.|.+.++.|.  ++......    .+...++..++....+++.||+|||+.+          ..          .
T Consensus       218 ~~~~~lp~~~~~~g~--s~~~~g~~----~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  291 (381)
T PRK03633        218 SLYGLMPLYLNHQGM--SDASIGFW----MALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAMLSQAAMAPA  291 (381)
T ss_pred             HHHHHHHHHHHHcCC--CHHHHHHH----HHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            344567888887777  34333332    2366688889999999999999999987          00          0


Q ss_pred             HHHhh---ccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           71 TITFS---KGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        71 ~~~~~---~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      ....+   ....|.......|..|++.++...+.......+|..+++.+..++.+
T Consensus       292 ~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~  346 (381)
T PRK03633        292 LFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQ  346 (381)
T ss_pred             HHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00001   11124445567788888877777777777778888888888887754

>TIGR00901 2A0125 AmpG-related permease

Probab=98.22  E-value=8.2e-06  Score=61.49  Aligned_cols=103  Identities=15%  Similarity=-0.038  Sum_probs=65.3

Q ss_pred             HHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhh-----CChHHH------------------
Q 036778           11 AIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKF-----GRRPLL------------------   67 (145)
Q Consensus        11 ~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~-----grr~~~------------------   67 (145)
                      .+++-.|.+.++.|.+  ..+......    . .+... ..++.|.++||+     ||||.+                  
T Consensus         6 ~~~~~~~~~~~~~g~s--~~~~g~~~~----~-~~~~~-~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~   77 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVS--LKTIGFFSL----V-GLPYS-LKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL   77 (356)
T ss_pred             hHHhHHHHHHHHcCCC--HHHHHHHHH----H-HHHHH-HHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC
Confidence            3445678889999995  443333321    1 12223 278999999998     888864                  


Q ss_pred             -------HHHHH--H---hhccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           68 -------LGYTI--T---FSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        68 -------~~~~~--~---~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                             .+...  .   ......+...++++|.+|++.|+++.++......+|..+++.+...+.
T Consensus        78 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~  143 (356)
T TIGR00901        78 VPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLA  143 (356)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                   00000  0   000111333467899999999999999988888888877777765443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.22  E-value=1.5e-05  Score=63.47  Aligned_cols=109  Identities=13%  Similarity=0.044  Sum_probs=67.8

Q ss_pred             chHHHHHhHHHHH-hhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhh-hCChHHH------------------
Q 036778            8 GSTAIAYYASSIF-DVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK-FGRRPLL------------------   67 (145)
Q Consensus         8 g~~~~~~~~~~i~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr-~grr~~~------------------   67 (145)
                      +.+.+..+.+.++ +++|.+  ........+    .+........+++|+++|| +|||+.+                  
T Consensus        36 ~~y~~~~~l~~yl~~~lg~s--~~~a~~~~~----~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~  109 (500)
T PRK09584         36 GYYGLQGIMAVYLVKQLGMS--EADSITLFS----SFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSG  109 (500)
T ss_pred             HHHHHHHHHHHHHHHHcCCC--HHHHHHHHH----HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc
Confidence            4455555666666 558884  333332222    2333334445688999999 5999988                  


Q ss_pred             ------HHHHHHhhccc---cchhhhhhcccCCcch--hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 ------LGYTITFSKGM---VRLPNLIMFETFSINI--KGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 ------~~~~~~~~~~~---~~~~~~~~~e~~p~~~--R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                            .......+.+.   .+....+.+|.+|.+.  |..+.++.++..++|..+++.+.+++.+
T Consensus       110 ~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~  175 (500)
T PRK09584        110 HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAA  175 (500)
T ss_pred             ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence                  00011112221   2344568899998653  4567888888899999999988888865

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.20  E-value=3.7e-06  Score=65.42  Aligned_cols=109  Identities=7%  Similarity=-0.001  Sum_probs=68.7

Q ss_pred             chHHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChH--HH--------HHH------
Q 036778            8 GSTAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRP--LL--------LGY------   70 (145)
Q Consensus         8 g~~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~--~~--------~~~------   70 (145)
                      +.+.+..|.|.++++ .|.+  +....+..    +.+.+..+++.+.++++.||+++++  ..        ...      
T Consensus       266 ~~~~~~~~~p~~l~~~~g~s--~~~~~~~~----~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (438)
T TIGR00712       266 LRYGVLDWSPTYLKEVKHFA--LDKSSWAY----FLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWM  339 (438)
T ss_pred             HHHHHHHhHHHHHHHccCCC--hhhHHHHH----HHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHh
Confidence            335566788888886 5763  43332222    2555888999999999999996433  22        000      


Q ss_pred             ------------HHHhhcc-ccchh--hhhhcccCCcchhhhHHHHHHHHHHHHH-HHHHHHHHHHhh
Q 036778           71 ------------TITFSKG-MVRLP--NLIMFETFSINIKGSAGSLVTFLHNNSN-SLVAYAFNFMIE  122 (145)
Q Consensus        71 ------------~~~~~~~-~~~~~--~~~~~e~~p~~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~  122 (145)
                                  .+..+.+ .++..  .....|.+|++.|+++.|+.+....+++ ++++.+.+.+.+
T Consensus       340 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~  407 (438)
T TIGR00712       340 NPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD  407 (438)
T ss_pred             cCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHH
Confidence                        0001111 11111  2346799999999999999988887765 567888777765

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.20  E-value=8.6e-07  Score=68.39  Aligned_cols=98  Identities=14%  Similarity=0.012  Sum_probs=70.9

Q ss_pred             HHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH---------------------------HH
Q 036778           17 SSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL---------------------------LG   69 (145)
Q Consensus        17 ~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~---------------------------~~   69 (145)
                      |.+.++.+.+  -.+..+    +.+++.+...++-+..|.++||.+.|+.+                           .+
T Consensus        53 p~l~e~~~ls--k~~lG~----i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~l  126 (448)
T COG2271          53 PALIEDGGLS--KTQLGI----LGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVL  126 (448)
T ss_pred             HHHHHhcCCC--HHHHHH----HHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            4444555553  333333    33488899999999999999999999877                           11


Q ss_pred             HHHHhhccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHH--HHHh
Q 036778           70 YTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAF--NFMI  121 (145)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~  121 (145)
                      -..+.++|+ |.+...++..+|++.|++..++.+..+++|+.+.+.+.  .++.
T Consensus       127 ng~fQg~Gw-pp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~  179 (448)
T COG2271         127 NGWFQGMGW-PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA  179 (448)
T ss_pred             HHHHhcCCC-cHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH
Confidence            111223443 44457888999999999999999999999999988887  5554

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.19  E-value=1.1e-05  Score=69.66  Aligned_cols=86  Identities=13%  Similarity=-0.030  Sum_probs=66.7

Q ss_pred             ehhhhhhhhhhhhHHHHHHHHHhhhCChHHH--------------------------HHHHHHhh---ccccchhhhhhc
Q 036778           37 SILRHIQSLFQVPVVGSSVLLADKFGRRPLL--------------------------LGYTITFS---KGMVRLPNLIMF   87 (145)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------------------------~~~~~~~~---~~~~~~~~~~~~   87 (145)
                      ++..+++.+...+.+++.|+++||+|||+++                          ++..+..+   ....+...+++.
T Consensus        55 ~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~  134 (1140)
T PRK06814         55 TLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILP  134 (1140)
T ss_pred             HHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhH
Confidence            3445578888899999999999999999964                          11111112   122366678999


Q ss_pred             ccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           88 ETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        88 e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      |++|.+.|++++|+..+...++..+++.+.+++..
T Consensus       135 ~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~  169 (1140)
T PRK06814        135 DHLNKDELLGANALVEAGTFIAILLGTIIGGLATI  169 (1140)
T ss_pred             hhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998888887765

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.17  E-value=4.8e-08  Score=75.84  Aligned_cols=81  Identities=20%  Similarity=0.163  Sum_probs=58.4

Q ss_pred             eehhhhhhhhhhhhHHHHHHHHHhhhCChHHH--------------------------HHHHHHhhccc---cchhhhhh
Q 036778           36 ISILRHIQSLFQVPVVGSSVLLADKFGRRPLL--------------------------LGYTITFSKGM---VRLPNLIM   86 (145)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------------------------~~~~~~~~~~~---~~~~~~~~   86 (145)
                      .+++++...++..+|++++|++.||+|||+.+                          ...++..+.+.   .+....|+
T Consensus        48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~  127 (451)
T PF00083_consen   48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYI  127 (451)
T ss_pred             HHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34556688899999999999999999999988                          01111112222   24566899


Q ss_pred             cccCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 036778           87 FETFSINIKGSAGSLVTFLHNNSNSLVAYA  116 (145)
Q Consensus        87 ~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~  116 (145)
                      .|..|++.|++..++......+|..++..+
T Consensus       128 ~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~  157 (451)
T PF00083_consen  128 SEIAPPKHRGFLSSLFQLFWALGILLASLI  157 (451)
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            999999999999988887666665554433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00889 2A0110 nucleoside transporter

Probab=98.15  E-value=2.3e-05  Score=60.88  Aligned_cols=84  Identities=13%  Similarity=0.216  Sum_probs=59.0

Q ss_pred             hhhhhhhhhhhHHHHHHHHHhhhCChHHH--------HH---HHH----------------Hhhcc---ccchhhhhhcc
Q 036778           39 LRHIQSLFQVPVVGSSVLLADKFGRRPLL--------LG---YTI----------------TFSKG---MVRLPNLIMFE   88 (145)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------~~---~~~----------------~~~~~---~~~~~~~~~~e   88 (145)
                      +.+...+...++.+..+++.||+|||+++        ..   +..                ..+.+   ..+....+++|
T Consensus       256 ~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~  335 (418)
T TIGR00889       256 WMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEK  335 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33466678888899999999999999998        00   000                01111   11233467899


Q ss_pred             cCCcchhhhHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 036778           89 TFSINIKGSAGSLVT-FLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        89 ~~p~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~~~  122 (145)
                      .+|++.|+++.++.+ ....++..+++.+.+++.+
T Consensus       336 ~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~  370 (418)
T TIGR00889       336 EVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVE  370 (418)
T ss_pred             HCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999999999997 5567788888888776654

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.13  E-value=8.5e-06  Score=62.80  Aligned_cols=96  Identities=14%  Similarity=0.019  Sum_probs=71.8

Q ss_pred             HhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH--------------------------HHHHHH
Q 036778           20 FDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL--------------------------LGYTIT   73 (145)
Q Consensus        20 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------------------------~~~~~~   73 (145)
                      -+++++  ++.+..++.+    ++.+...+.-++-+.+.||+|-|++.                          +.....
T Consensus        41 ~~~~~L--S~~q~~ll~a----iPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll  114 (417)
T COG2223          41 KSDFGL--SEGQKGLLVA----IPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLL  114 (417)
T ss_pred             ccccCC--CHHHHHHHHH----HHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHH
Confidence            355666  4555554444    88899999999999999999998887                          111111


Q ss_pred             h--hccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           74 F--SKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        74 ~--~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      .  +.+...+...++++.||++.++.+.|+.- .+|+|..+...+.|.+..
T Consensus       115 ~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~  164 (417)
T COG2223         115 LGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAV  164 (417)
T ss_pred             HhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHH
Confidence            1  12222455578999999999999999999 999999999999988765

>TIGR00899 2A0120 sugar efflux transporter

Probab=98.12  E-value=2.7e-05  Score=58.73  Aligned_cols=102  Identities=14%  Similarity=0.135  Sum_probs=65.3

Q ss_pred             HhHHHHH-hhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HH
Q 036778           14 YYASSIF-DVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LG   69 (145)
Q Consensus        14 ~~~~~i~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~   69 (145)
                      .+.|.+. ++.|.+  +........    .......++.+..+++.||+|||+.+                       ..
T Consensus       220 ~~~~~~~~~~~g~~--~~~~g~~~~----~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (375)
T TIGR00899       220 INMPLLIIHELGLP--DKLAGLMMG----TAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLM  293 (375)
T ss_pred             hhhHHHHHHHcCCC--HHHHHHHHH----HHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555 446774  433333222    33355667788899999999999987                       00


Q ss_pred             HHHHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           70 YTITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        70 ~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      .....+.+   ..+....+..|..|.+ |+++.++.+....++..+++.+.+.+.+
T Consensus       294 ~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~  348 (375)
T TIGR00899       294 LQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAE  348 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00011111   1234456778888865 5699999998888999999988887754

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.11  E-value=1.1e-05  Score=48.29  Aligned_cols=60  Identities=18%  Similarity=0.174  Sum_probs=48.3

Q ss_pred             hhhhhchHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHH
Q 036778            3 MQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLL   68 (145)
Q Consensus         3 ~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~   68 (145)
                      +..+++...+..|.|.+.++.|+  ++.+..++.+    +..+..+++.+++|+++||.+|++...
T Consensus        10 f~~f~~~g~~~Pfl~~~~~~~Gl--~~~~iGil~~----i~~~~~~~~~pl~g~laDk~~~~~~~l   69 (77)
T PF12832_consen   10 FFYFAALGCLYPFLPLYLKQLGL--SPSQIGILSA----IRPLIRFLAPPLWGFLADKFGKRKVIL   69 (77)
T ss_pred             HHHHHHHHHHHhhhhHhhhhcCC--CHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCccHHHH
Confidence            34556667778899999999999  5655554444    888999999999999999999999773

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.10  E-value=1.8e-05  Score=58.83  Aligned_cols=102  Identities=15%  Similarity=0.127  Sum_probs=68.7

Q ss_pred             chHHHHHhHHHH-HhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-------------------
Q 036778            8 GSTAIAYYASSI-FDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-------------------   67 (145)
Q Consensus         8 g~~~~~~~~~~i-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-------------------   67 (145)
                      .......+.|.+ .+..|.+ +........+    ...+...++.++.+++.||+++|+..                   
T Consensus       221 ~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (352)
T PF07690_consen  221 VFSGFSFFLPLYLQEVLGFS-GPSQAGLLFS----IFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPF  295 (352)
T ss_dssp             HHHHHHHHHHHHCCHHHHCC-THHHHHHHHH----HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHHhhcccchhhhhccCCC-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334466677776 4457773 1333332233    55577777899999999999987766                   


Q ss_pred             -------HHHHHHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHH
Q 036778           68 -------LGYTITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVA  114 (145)
Q Consensus        68 -------~~~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~  114 (145)
                             .......+.+   ..+....+..|..|++.|++..++......++..++|
T Consensus       296 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  296 SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence                   1111111111   1345568889999999999999999999998888765

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.09  E-value=1.6e-06  Score=67.65  Aligned_cols=73  Identities=18%  Similarity=0.144  Sum_probs=58.2

Q ss_pred             ehhhhhhhhhhhhHHHHHHHHHhhhCChHHH------------------------------HHHHHHhhcccc---chhh
Q 036778           37 SILRHIQSLFQVPVVGSSVLLADKFGRRPLL------------------------------LGYTITFSKGMV---RLPN   83 (145)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~------------------------------~~~~~~~~~~~~---~~~~   83 (145)
                      +.++++.+++.++|+++.||+.||+|||+++                              .++++..+.|.+   |...
T Consensus        87 ~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSA  166 (538)
T KOG0252|consen   87 ALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSA  166 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchH
Confidence            3456688899999999999999999999998                              455566666666   7777


Q ss_pred             hhhcccCCcchhhhHHHHHHHHHHHH
Q 036778           84 LIMFETFSINIKGSAGSLVTFLHNNS  109 (145)
Q Consensus        84 ~~~~e~~p~~~R~~~~~~~~~~~~~~  109 (145)
                      +..+|-...+.|+.-.+...++...|
T Consensus       167 tI~SE~an~~~RGa~iaavFa~Qg~G  192 (538)
T KOG0252|consen  167 TIMSESANKKTRGAFIAAVFAMQGFG  192 (538)
T ss_pred             HHhhhhhhhccccceeEEEEEecchh
Confidence            89999999999998887766544444

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.09  E-value=2.5e-05  Score=60.12  Aligned_cols=111  Identities=10%  Similarity=-0.013  Sum_probs=71.2

Q ss_pred             hhhhchHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhh-----CChHH-H----------
Q 036778            4 QTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKF-----GRRPL-L----------   67 (145)
Q Consensus         4 ~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~-----grr~~-~----------   67 (145)
                      .|.-.......-.|.++++.|.+  ..+..++..    ...  -.+..++.+.++||+     ||||. +          
T Consensus        10 ~~~~~~~~~~~~~~~~l~~~g~~--~~~ig~~~~----~~~--~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~   81 (402)
T PRK11902         10 ASGLPLALTSGTLQAWMTVEGLD--IQTIGFFSL----VGQ--AYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAAS   81 (402)
T ss_pred             HHhhhHHHHHHHHHHHHHHcCCC--HHHHHHHHH----HHH--HHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHH
Confidence            34444555666789999999995  443333321    111  156779999999999     88764 3          


Q ss_pred             ----------------HHHHHH---hhccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 ----------------LGYTIT---FSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 ----------------~~~~~~---~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                                      ....+.   ......+...++.+|.+|++.|+++.++......++..+++.+..++..
T Consensus        82 ~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~  155 (402)
T PRK11902         82 IAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLAD  155 (402)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence                            000000   0111113445788999999999999999988878888777776655544

>PRK03545 putative arabinose transporter; Provisional

Probab=98.06  E-value=6.4e-05  Score=57.51  Aligned_cols=102  Identities=12%  Similarity=-0.024  Sum_probs=66.7

Q ss_pred             HhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HH
Q 036778           14 YYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LG   69 (145)
Q Consensus        14 ~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~   69 (145)
                      .|.+.+.++ .|.+  .........    ...++..++.++.+++.||++||+..                       ..
T Consensus       226 ~~~~~~l~~~~g~s--~~~~~~~~~----~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  299 (390)
T PRK03545        226 SYIEPFVQQVAGLS--ENFATLLLL----LFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAANSEWHLSV  299 (390)
T ss_pred             HHHHHHHHHhcCCC--ccHHHHHHH----HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            344555554 6774  443333222    55578899999999999999998776                       00


Q ss_pred             HHHHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           70 YTITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        70 ~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      ..+.++.+   ..+.......|..| +.|++++++......++..+++.+.+++.+
T Consensus       300 ~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~  354 (390)
T PRK03545        300 LSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSL  354 (390)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11111111   11223355667766 688999999998888999999998888876

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.05  E-value=1.5e-05  Score=62.32  Aligned_cols=112  Identities=9%  Similarity=-0.022  Sum_probs=70.7

Q ss_pred             hhhhhchHHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHH---------H----H
Q 036778            3 MQTLGGSTAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPL---------L----L   68 (145)
Q Consensus         3 ~~~~~g~~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~---------~----~   68 (145)
                      +.+..+.+....|.|.++++ .|.+  .....+.    .+.+.++..++.+++|+++||+++|+.         .    .
T Consensus       271 ~~~~~~~~~~~~~lp~~l~~~~g~s--~~~~g~~----~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  344 (465)
T TIGR00894       271 FGHFWLYTILPTYLPTFISWVLRVS--GKENGLL----SSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGG  344 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcC--hHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            34445566667788988876 6773  4433333    337778999999999999999864421         1    0


Q ss_pred             ------HHHHH------------h---hcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           69 ------GYTIT------------F---SKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        69 ------~~~~~------------~---~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                            .+...            +   +..   ..+..+....|..|. .++...++.+..+.+++++.+.+.+++.
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~  420 (465)
T TIGR00894       345 LGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNIL  420 (465)
T ss_pred             HHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheee
Confidence                  00000            0   000   001122344466665 8999999999999999988888887664

>PRK11010 ampG muropeptide transporter; Validated

Probab=98.05  E-value=3.6e-05  Score=61.06  Aligned_cols=107  Identities=10%  Similarity=-0.051  Sum_probs=67.6

Q ss_pred             chHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhh-----CChHHH-------H-H-----
Q 036778            8 GSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKF-----GRRPLL-------L-G-----   69 (145)
Q Consensus         8 g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~-----grr~~~-------~-~-----   69 (145)
                      .........|.++++.|.+  .........     . ....++.++.+.++||+     |||+.+       . .     
T Consensus        27 ~~~~~~~~l~~~l~~~g~~--~~~ig~~~~-----~-~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~   98 (491)
T PRK11010         27 PLALTSGTLQAWMTVENID--LKTIGFFSL-----V-GQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAM   98 (491)
T ss_pred             HHHHHHHHHHHHHHhCCCC--HHHHHHHHH-----H-HHHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHH
Confidence            3444555567777777774  332222211     0 11125789999999999     998853       0 0     


Q ss_pred             --------------HHH---HhhccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           70 --------------YTI---TFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        70 --------------~~~---~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                                    ...   .......+...++.+|.+|.+.|+++.++......+|..+++....++.+
T Consensus        99 a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~  168 (491)
T PRK11010         99 GFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLAD  168 (491)
T ss_pred             HHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                          000   00111113345788899999999999999999888888888877666654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=98.05  E-value=3e-05  Score=59.45  Aligned_cols=55  Identities=20%  Similarity=0.053  Sum_probs=39.9

Q ss_pred             hchHHHHHhHHHHHh-hhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH
Q 036778            7 GGSTAIAYYASSIFD-VASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL   67 (145)
Q Consensus         7 ~g~~~~~~~~~~i~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~   67 (145)
                      .+......+.|.+.+ +.|.  +..+..+.    .+.+.++..++.++.|+++||+|||+.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~g~--s~~~~g~~----~~~~~l~~~i~~~~~G~l~Dr~grr~~~   71 (396)
T TIGR00882        16 FIMSAYFPFFPIWLHDVNGL--SKTDTGIV----FSCISLFSILFQPLFGLISDKLGLKKHL   71 (396)
T ss_pred             HHHHHHHHHHHHHHHHhcCC--CHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence            344444456666665 4788  45444433    3488899999999999999999999998

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.03  E-value=2.6e-05  Score=63.17  Aligned_cols=102  Identities=14%  Similarity=0.109  Sum_probs=61.3

Q ss_pred             HHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HHHHHH
Q 036778           17 SSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LGYTIT   73 (145)
Q Consensus        17 ~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~~~~~   73 (145)
                      +.+.+++|-+.+..+...       .+.+...++.++.|.++|.+|||..+                       ..-..+
T Consensus        68 ~~I~~diG~~~~~~w~~~-------~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l  140 (599)
T PF06609_consen   68 PYINADIGGSDNWSWFST-------AWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVL  140 (599)
T ss_pred             HHHHHhcCCCccchHHHH-------HHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHH
Confidence            455566776412213222       45588888999999999999999998                       111111


Q ss_pred             hhccc--cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh---hccC
Q 036778           74 FSKGM--VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI---EWST  125 (145)
Q Consensus        74 ~~~~~--~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~  125 (145)
                      ++.+.  .......++|+.|.+.|..+.++..........+++.+...+.   .||+
T Consensus       141 ~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw  197 (599)
T PF06609_consen  141 YGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRW  197 (599)
T ss_pred             HHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcch
Confidence            12222  2334456899999999988877665433333333444443333   2777

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00896 CynX cyanate transporter

Probab=98.02  E-value=7.1e-05  Score=56.45  Aligned_cols=108  Identities=8%  Similarity=0.032  Sum_probs=68.5

Q ss_pred             hHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhC-ChHHH--------------------
Q 036778            9 STAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFG-RRPLL--------------------   67 (145)
Q Consensus         9 ~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~g-rr~~~--------------------   67 (145)
                      ......+.|.++++.|.+  ........    +...++.+++.++.+++.||++ ||+.+                    
T Consensus       213 ~~~~~~~lp~~~~~~g~~--~~~~g~~~----~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (355)
T TIGR00896       213 YYSLIGWLPAILISHGAS--AATAGSLL----ALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMH  286 (355)
T ss_pred             HHHHHHHHHHHHHHcCCC--HHHHHHHH----HHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhh
Confidence            344456788888887773  44333333    3667889999999999999994 55544                    


Q ss_pred             --HHHHHHhhcccc---chhhhhhcc-cCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 --LGYTITFSKGMV---RLPNLIMFE-TFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 --~~~~~~~~~~~~---~~~~~~~~e-~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                        ..+...++.+.+   +.......+ ..+++.++...++.+....++..+++.+..++.+
T Consensus       287 ~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~  347 (355)
T TIGR00896       287 GLWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHD  347 (355)
T ss_pred             HHHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              001111222222   222233333 3455677888898888888888888888877765

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.01  E-value=5e-05  Score=60.07  Aligned_cols=82  Identities=16%  Similarity=0.000  Sum_probs=65.0

Q ss_pred             hhhhhhhhhHHHHHHHHHhhhCChHHH-------------------------HHHHHHhhcccc---chhhhhhcccCCc
Q 036778           41 HIQSLFQVPVVGSSVLLADKFGRRPLL-------------------------LGYTITFSKGMV---RLPNLIMFETFSI   92 (145)
Q Consensus        41 ~~~~~~~~~~~~~~~~l~Dr~grr~~~-------------------------~~~~~~~~~~~~---~~~~~~~~e~~p~   92 (145)
                      +.+..+.+++.+..++++||+|-|+++                         ...++..+.+.+   |....+.+...|+
T Consensus        80 ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~  159 (466)
T KOG2532|consen   80 SSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPP  159 (466)
T ss_pred             HHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCH
Confidence            378899999999999999999999988                         223333333322   4455778899999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           93 NIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        93 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      +.|++..++......+|.++...+.+++.+
T Consensus       160 ~Ers~~~ail~~g~q~g~v~~mp~sg~lc~  189 (466)
T KOG2532|consen  160 NERSTFIAILTAGSQLGTIITMPVSGLLCE  189 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence            999999999998888888888878887775

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.00  E-value=6e-05  Score=59.95  Aligned_cols=94  Identities=21%  Similarity=0.178  Sum_probs=66.9

Q ss_pred             hhhhhHHHHHHHHHhhhCChHHH---------------------H---------HHHHHhhccccchhhhhhcccCCcch
Q 036778           45 LFQVPVVGSSVLLADKFGRRPLL---------------------L---------GYTITFSKGMVRLPNLIMFETFSINI   94 (145)
Q Consensus        45 ~~~~~~~~~~~~l~Dr~grr~~~---------------------~---------~~~~~~~~~~~~~~~~~~~e~~p~~~   94 (145)
                      ....++....+.+.||.|||...                     .         +..++.+.+. ...+.+.+|++|+..
T Consensus       361 ~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~el~pt~~  439 (521)
T KOG0255|consen  361 LVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAF-NLIFLYSAELIPTVV  439 (521)
T ss_pred             HHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccHHH
Confidence            56777778888999999999988                     0         0000011111 233688999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhh----cc---C---------------CCCCCCCHHHHHHH
Q 036778           95 KGSAGSLVTFLHNNSNSLVAYAFNFMIE----WS---T---------------IETKGRTLEEIQRS  139 (145)
Q Consensus        95 R~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~---------------pet~~~~l~~i~~~  139 (145)
                      |..+.+.+...+.+++++++.+......    +.   .               |||+++.++|-.+.
T Consensus       440 r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~  506 (521)
T KOG0255|consen  440 RNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLD  506 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHH
Confidence            9999999999999999888887644432    11   0               99999987654433

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.00  E-value=6.7e-05  Score=59.47  Aligned_cols=107  Identities=9%  Similarity=0.036  Sum_probs=72.7

Q ss_pred             HHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH---------------------
Q 036778           10 TAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL---------------------   67 (145)
Q Consensus        10 ~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~---------------------   67 (145)
                      ....+|.|.+++. .|.  ++........    .+.++..++.++.|++.||+|||+.+                     
T Consensus       276 ~~~~~~~~~~lq~v~g~--s~~~ag~~~~----~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~  349 (495)
T PRK14995        276 VGFELLMAQELQFVHGL--SPLEAGMFML----PVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFST  349 (495)
T ss_pred             HHHHHHHHHHHHHHcCC--CHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            3445677777776 577  4544443333    55578888999999999999999887                     


Q ss_pred             -----HHHHHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 -----LGYTITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 -----~~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                           ....+..+.+.+   +.......+..|.+.|+.+.++.+....+|+.+++.+...+..
T Consensus       350 ~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~  412 (495)
T PRK14995        350 QQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS  412 (495)
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 000111111111   1223455678899999999999999999998888887777655

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.98  E-value=3.5e-05  Score=63.07  Aligned_cols=101  Identities=7%  Similarity=-0.091  Sum_probs=71.4

Q ss_pred             hHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------HHHHH-----------
Q 036778           15 YASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------LGYTI-----------   72 (145)
Q Consensus        15 ~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------~~~~~-----------   72 (145)
                      -.+.+.++++++  .....++.+    .+.++..++.++.+++.||.|||+++           +++..           
T Consensus        55 ~l~~iek~F~ls--s~~~G~i~s----~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~  128 (633)
T TIGR00805        55 SLTTIERRFKLS--TSSSGLING----SYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYS  128 (633)
T ss_pred             hchhhhhhhCCC--CCcceeeee----hhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccc
Confidence            345566678884  444444444    88899999999999999999999987           11100           


Q ss_pred             ----------------------------------------------------Hhhcccc---chhhhhhcccCCcchhhh
Q 036778           73 ----------------------------------------------------TFSKGMV---RLPNLIMFETFSINIKGS   97 (145)
Q Consensus        73 ----------------------------------------------------~~~~~~~---~~~~~~~~e~~p~~~R~~   97 (145)
                                                                          ..+.+.+   +....|+.|.+|++.|++
T Consensus       129 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~  208 (633)
T TIGR00805       129 TTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPL  208 (633)
T ss_pred             ccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHH
Confidence                                                                0011111   344578999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           98 AGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                      .+++......+|..+++.+..++.
T Consensus       209 ~~~i~~~~~~iG~~lG~llgg~l~  232 (633)
T TIGR00805       209 YIGILESIAVFGPAFGYLLGSFCL  232 (633)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHH
Confidence            999999888888777766655443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK10504 putative transporter; Provisional

Probab=97.97  E-value=7.3e-05  Score=58.52  Aligned_cols=107  Identities=13%  Similarity=0.126  Sum_probs=68.7

Q ss_pred             HHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHH--------------------
Q 036778           10 TAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLL--------------------   68 (145)
Q Consensus        10 ~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~--------------------   68 (145)
                      ....++.|.+++. .|.  ++....+..    ....++..++.++.+++.||+|||+++.                    
T Consensus       278 ~~~~~~~~~~~~~~~g~--~~~~~g~~~----~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~  351 (471)
T PRK10504        278 GMLPFMTPVFLQIGLGF--SPFHAGLMM----IPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLG  351 (471)
T ss_pred             HHHHHHHHHHHHHHcCC--CHHHHHHHH----HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccc
Confidence            3445567888875 676  444333322    2444666777788999999999999870                    


Q ss_pred             ----HH--HHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           69 ----GY--TITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        69 ----~~--~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                          ..  ....+.+.   .+....+..+..|.+.|+++.++.+....++..+++.+...+..
T Consensus       352 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~  414 (471)
T PRK10504        352 WYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG  414 (471)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                00  00001110   12233556688999999999999998888888777777665544

>PRK09528 lacY galactoside permease; Reviewed

Probab=97.97  E-value=4.8e-05  Score=58.81  Aligned_cols=52  Identities=19%  Similarity=0.124  Sum_probs=39.6

Q ss_pred             HHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH
Q 036778           10 TAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL   67 (145)
Q Consensus        10 ~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~   67 (145)
                      .....+.|.++++ .|.  +..+..++.+    ++.+...++.++.|+++||+|||+.+
T Consensus        27 ~~~~~~~~~~l~~~~g~--s~~~~g~~~s----~~~l~~~i~~~~~G~l~Dr~g~r~~~   79 (420)
T PRK09528         27 SSWFSFFPIWLHDINGL--SGTDTGIIFS----ANSLFALLFQPLYGLISDKLGLKKHL   79 (420)
T ss_pred             HHHHHHHHHHHHHhcCC--CHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCchHHH
Confidence            3445566666665 888  4555444444    88899999999999999999999987

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.97  E-value=3e-05  Score=61.19  Aligned_cols=100  Identities=16%  Similarity=-0.046  Sum_probs=61.2

Q ss_pred             HHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChH-----H-H-----H-----------
Q 036778           12 IAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRP-----L-L-----L-----------   68 (145)
Q Consensus        12 ~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~-----~-~-----~-----------   68 (145)
                      ...+.|.++.+ .|.+  .......    .+++.++..++.+++|+++||++||+     . +     .           
T Consensus       271 ~~~~~p~~l~~~~g~s--~~~a~~~----~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~  344 (476)
T PLN00028        271 MDNIIAEYFYDRFGLS--LETAGAI----AASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR  344 (476)
T ss_pred             HHhHHHHHHHHhcCCC--HHHHHHH----HHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc
Confidence            34456766654 6773  4433333    33677899999999999999998762     1 1     0           


Q ss_pred             --------HHHHHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036778           69 --------GYTITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFN  118 (145)
Q Consensus        69 --------~~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~  118 (145)
                              .....++.+   ..+..+.+.+|+.| +.|++..|+....+.+++.+.+.+..
T Consensus       345 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~  404 (476)
T PLN00028        345 ANSLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF  404 (476)
T ss_pred             cchHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH
Confidence                    000000000   11233455666654 68999999998888788877776653

>PTZ00207 hypothetical protein; Provisional

Probab=97.94  E-value=8.9e-05  Score=60.19  Aligned_cols=101  Identities=10%  Similarity=0.070  Sum_probs=62.9

Q ss_pred             HHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------HH---------
Q 036778           10 TAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------LG---------   69 (145)
Q Consensus        10 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------~~---------   69 (145)
                      +..+.+.|.+.+++|.+  ......+.+    .... .....++.|++.||+|||+++           +.         
T Consensus        44 y~fsv~s~~L~~~lgls--~~~l~~i~s----vg~~-~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i  116 (591)
T PTZ00207         44 YAFNLISGAMQARYNLT--QRDLSTITT----VGIA-VGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI  116 (591)
T ss_pred             HHHHHHHHHHHHHhCcC--HHHHHHHHH----HHHH-HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            45566788888889995  443333332    2122 223556789999999999998           00         


Q ss_pred             ---------HHHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036778           70 ---------YTITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFN  118 (145)
Q Consensus        70 ---------~~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~  118 (145)
                               +.+..+.+.   .+.......+.|| +.|++..|+......+|+.+.+.+..
T Consensus       117 ~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~  176 (591)
T PTZ00207        117 EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQL  176 (591)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     000011111   1223346678897 68999999999998888876554444

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.93  E-value=4.2e-05  Score=60.36  Aligned_cols=111  Identities=11%  Similarity=0.057  Sum_probs=65.5

Q ss_pred             hhhhchHHHHHhHHHHHhhhCCCCCcc-hhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH---------------
Q 036778            4 QTLGGSTAIAYYASSIFDVASNKLSTK-FGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL---------------   67 (145)
Q Consensus         4 ~~~~g~~~~~~~~~~i~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~---------------   67 (145)
                      +.+.+....+++.|.+.++ ..+.... ....+.       .+...++.+++|+++||+|+||++               
T Consensus       263 ~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~-------~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~  334 (462)
T PRK15034        263 ATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFG-------PFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLF  334 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHH-------HHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence            3444555566688888776 2220111 112222       267788889999999999999977               


Q ss_pred             ----------------HHHHHHhhcccc-chhhhhhcccCCc---------------------chhhhHHHHHHHHHHHH
Q 036778           68 ----------------LGYTITFSKGMV-RLPNLIMFETFSI---------------------NIKGSAGSLVTFLHNNS  109 (145)
Q Consensus        68 ----------------~~~~~~~~~~~~-~~~~~~~~e~~p~---------------------~~R~~~~~~~~~~~~~~  109 (145)
                                      .....+...|.+ ...+-+++++||.                     +.-+...|+..+++.+|
T Consensus       335 l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~G  414 (462)
T PRK15034        335 LTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVG  414 (462)
T ss_pred             HHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcc
Confidence                            000011122333 2344577788874                     13445667777777777


Q ss_pred             HHHHHHHHHHHhh
Q 036778          110 NSLVAYAFNFMIE  122 (145)
Q Consensus       110 ~~~~~~~~~~~~~  122 (145)
                      +++.|..+....+
T Consensus       415 gf~~p~~~g~~~~  427 (462)
T PRK15034        415 GFFIPQAFGMSLN  427 (462)
T ss_pred             cchhhHHHHHHHH
Confidence            7777777665543

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.87  E-value=0.00018  Score=57.11  Aligned_cols=110  Identities=14%  Similarity=0.070  Sum_probs=78.7

Q ss_pred             hchHHHHHhHHHHHh-hhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCCh--HHH----------------
Q 036778            7 GGSTAIAYYASSIFD-VASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRR--PLL----------------   67 (145)
Q Consensus         7 ~g~~~~~~~~~~i~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr--~~~----------------   67 (145)
                      .|.+++......+.+ .+|++  .........    .-++.+++|+++++++.||+|.|  +++                
T Consensus       295 dg~~ti~~~~~i~a~~~lg~s--~~~l~~~~l----~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~  368 (477)
T PF11700_consen  295 DGVNTIISFAGIYATEVLGMS--TTQLIVFGL----VVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLF  368 (477)
T ss_pred             HHHHHHHHHHHHHHHHhcCcC--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHH
Confidence            566777766666666 58995  332222211    44588999999999999999988  666                


Q ss_pred             ---------------HHHHHHhhc---cccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 ---------------LGYTITFSK---GMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 ---------------~~~~~~~~~---~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                                     +.+....+.   +..+..-.+.+|+.|+...+...|+....+...++++|.++..+.+
T Consensus       369 G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~  441 (477)
T PF11700_consen  369 GFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITD  441 (477)
T ss_pred             HhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           011111111   1124455788999999999999999999999999999999988765

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.86  E-value=7.8e-05  Score=59.14  Aligned_cols=102  Identities=15%  Similarity=0.070  Sum_probs=63.7

Q ss_pred             HHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHh----hhCChHHHH----------HHHHHh-
Q 036778           10 TAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLAD----KFGRRPLLL----------GYTITF-   74 (145)
Q Consensus        10 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D----r~grr~~~~----------~~~~~~-   74 (145)
                      .....+.+.+++.+|.+  ......+..    +..+..++.+++.|+++|    |+||||.+.          .....+ 
T Consensus        21 ~l~~~~l~~yl~~lg~~--~~~~~~i~~----~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~   94 (477)
T TIGR01301        21 ALQLSLLTPYVQELGIP--HAWASIIWL----CGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFA   94 (477)
T ss_pred             HHHHHHHHHHHHHcCCC--HHHHHHHHH----HHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence            44445566678888984  443333332    555888999999999999    599999880          000000 


Q ss_pred             -----------------------h---------cc-ccchhhhhhcccCCcchh--hhHHHHHHHHHHHHHHHHHHHH
Q 036778           75 -----------------------S---------KG-MVRLPNLIMFETFSINIK--GSAGSLVTFLHNNSNSLVAYAF  117 (145)
Q Consensus        75 -----------------------~---------~~-~~~~~~~~~~e~~p~~~R--~~~~~~~~~~~~~~~~~~~~~~  117 (145)
                                             .         .. ..+..-++++|+.|.+.|  ..+.++......+|+.++..+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g  172 (477)
T TIGR01301        95 ADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAG  172 (477)
T ss_pred             chhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                   0         00 012234688999999876  4677776666666666655443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.80  E-value=0.00015  Score=55.40  Aligned_cols=107  Identities=7%  Similarity=-0.120  Sum_probs=69.9

Q ss_pred             chHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH--------------------
Q 036778            8 GSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL--------------------   67 (145)
Q Consensus         8 g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------------------   67 (145)
                      +......|.|.++++.|.  +..+..++.+    .+.+...++.++.+.++||.|||+..                    
T Consensus        19 ~~~~~~p~l~~~l~~~g~--s~~~ig~~~s----~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~   92 (382)
T TIGR00902        19 AYGIFLPFFPAWLKGIGL--GEEMIGLLIG----AALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAH   92 (382)
T ss_pred             HHHHHHHHHHHHHHHcCC--CHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            344555677888999998  4555554444    77788889999999999999985433                    


Q ss_pred             -----HHHHHHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 -----LGYTITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 -----~~~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                           .......+..   ..+....+..|  +.+.|++.++.....+.+|..+++.+..++.+
T Consensus        93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~  153 (382)
T TIGR00902        93 NAWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIG  153 (382)
T ss_pred             hHHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence                 0000011111   12333334433  24678888999988888888888887777765

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.80  E-value=8e-05  Score=57.52  Aligned_cols=98  Identities=12%  Similarity=0.004  Sum_probs=59.0

Q ss_pred             HhHHHHH-hhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhh----hCChHHH--------H-HHHHH------
Q 036778           14 YYASSIF-DVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK----FGRRPLL--------L-GYTIT------   73 (145)
Q Consensus        14 ~~~~~i~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr----~grr~~~--------~-~~~~~------   73 (145)
                      .|.+.++ +.+|.  ++.....+.    ++..+...+..++.|+++||    +||||.+        . .....      
T Consensus        20 ~~l~~~~~~~~g~--s~~~~g~i~----~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~   93 (437)
T TIGR00792        20 TYLLFFYTDVLGL--SAAFVGTLF----LVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDF   93 (437)
T ss_pred             HHHHHHHHHccCC--CHHHHHHHH----HHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCC
Confidence            3444444 45888  454444433    37778889999999999998    5775644        0 00000      


Q ss_pred             ---------------hhcc--c-cchhhhhhcccC-CcchhhhHHHHHHHHHHHHHHHHHHHH
Q 036778           74 ---------------FSKG--M-VRLPNLIMFETF-SINIKGSAGSLVTFLHNNSNSLVAYAF  117 (145)
Q Consensus        74 ---------------~~~~--~-~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~~  117 (145)
                                     ++.+  . .....++.+|+. +++.|++..++......+|+.+.+.+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~  156 (437)
T TIGR00792        94 SATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIV  156 (437)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           0000  0 011235667876 568899999988877777766655543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.80  E-value=0.00015  Score=55.45  Aligned_cols=82  Identities=11%  Similarity=-0.021  Sum_probs=57.5

Q ss_pred             hhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HHHHHHhhcccc---chhhhhhcccCCcch
Q 036778           41 HIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LGYTITFSKGMV---RLPNLIMFETFSINI   94 (145)
Q Consensus        41 ~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~~~~~~~~~~~---~~~~~~~~e~~p~~~   94 (145)
                      +++.+..+++.+..+++.||+|||+.+                       ....+..+.+.+   +....+..+..|.+.
T Consensus       265 ~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  344 (408)
T PRK09874        265 SVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI  344 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc
Confidence            355577778888899999999999987                       001111111111   222345567788899


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           95 KGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        95 R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      |++.+++......++..+++.+...+.+
T Consensus       345 ~g~~~~~~~~~~~~g~~~gp~~~G~l~~  372 (408)
T PRK09874        345 AGRIFSYNQSFRDIGNVTGPLMGAAISA  372 (408)
T ss_pred             ceeeehHHHHHHHHHHHhhHHHHHHHHh
Confidence            9999999998888999898888877754

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=97.79  E-value=0.00025  Score=54.25  Aligned_cols=107  Identities=12%  Similarity=0.024  Sum_probs=69.5

Q ss_pred             hHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH---------------------
Q 036778            9 STAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL---------------------   67 (145)
Q Consensus         9 ~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~---------------------   67 (145)
                      ......+.|.+.++.|.  ++.....+.+    +..++..++....+.+.||+|+|+++                     
T Consensus       221 ~~~~~~~~~~~l~~~g~--s~~~~g~l~~----~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~  294 (382)
T TIGR00902       221 HAAYYGFSAIYWQAAGI--SASATGLLWG----IGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFP  294 (382)
T ss_pred             HHHHHHHHHHHHHHCCC--CHhHHHHHHH----HHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHH
Confidence            34445566777788888  4444433333    56688888888999999999999987                     


Q ss_pred             --HHHHHHhhcccc---chhhhhhcccCCcchhhhHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 036778           68 --LGYTITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTF-LHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 --~~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~-~~~~~~~~~~~~~~~~~~  122 (145)
                        .......+.+.+   +....++.+. |.+.|+++.++.+. ...++..+++.+.+++.+
T Consensus       295 ~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~  354 (382)
T TIGR00902       295 LIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYP  354 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              001111111111   2334577787 99999999998764 445677777777777655

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.79  E-value=7e-05  Score=58.03  Aligned_cols=110  Identities=13%  Similarity=0.055  Sum_probs=81.4

Q ss_pred             hchHHHHHhHHHHHh-hhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH------------------
Q 036778            7 GGSTAIAYYASSIFD-VASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL------------------   67 (145)
Q Consensus         7 ~g~~~~~~~~~~i~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~------------------   67 (145)
                      .|.+++.-+...+.+ ++|++ +.+ ..+...    ..++.+++|+++.++|.||+|-|+++                  
T Consensus       266 DGv~til~~~~~fg~~~~gls-~~~-lll~g~----~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~  339 (438)
T COG2270         266 DGVNTILAMGGVFGAADLGLS-STE-LLLIGI----ALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLE  339 (438)
T ss_pred             hhHHHHHHHHHHHHHHHcCcc-HHH-HHHHHH----HHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcc
Confidence            677888777777777 58995 333 222222    44589999999999999999999887                  


Q ss_pred             -----HHHHHHhh---ccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 -----LGYTITFS---KGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 -----~~~~~~~~---~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                           +++....+   .+..+..=.|.+++.|++.-++..|+....++...+++|.....+.+
T Consensus       340 ~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~  402 (438)
T COG2270         340 GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQ  402 (438)
T ss_pred             ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence                 12212222   22334556789999999999999999999999999999988877655

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.78  E-value=0.00021  Score=53.94  Aligned_cols=102  Identities=15%  Similarity=0.126  Sum_probs=62.4

Q ss_pred             HHHHHhHHHHHh-hhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------H-H-------
Q 036778           10 TAIAYYASSIFD-VASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------L-G-------   69 (145)
Q Consensus        10 ~~~~~~~~~i~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------~-~-------   69 (145)
                      .....+.|.+.+ +.|.+  +.....+.    +...++..++.++.+++.||+|||+.+           . .       
T Consensus       223 ~~~~~~~~~~~~~~~g~~--~~~~g~~~----~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (385)
T TIGR00710       223 FAFFSGAPFVYIDIMGVS--PSVFGLLF----ALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILG  296 (385)
T ss_pred             HHHHHcChHHHHHHcCCC--HHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            334445566665 47773  43333322    255688889999999999999999876           0 0       


Q ss_pred             ---------HHHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036778           70 ---------YTITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFN  118 (145)
Q Consensus        70 ---------~~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~  118 (145)
                               .....+.+.   .+....+..|..| +.|+++.++.+.....++.+.+....
T Consensus       297 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~  356 (385)
T TIGR00710       297 LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVS  356 (385)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence                     000011111   1334456678777 57899999988777665555555544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.74  E-value=0.00032  Score=54.28  Aligned_cols=111  Identities=16%  Similarity=0.055  Sum_probs=74.3

Q ss_pred             hhhchHHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----------------
Q 036778            5 TLGGSTAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----------------   67 (145)
Q Consensus         5 ~~~g~~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------------   67 (145)
                      ..+|.+..+.|...++++ .|++  +....+..-    .+.++.++|..++|++.|| +.|+.+                
T Consensus       223 ~~~g~F~~ftYi~P~L~~v~g~s--~~~vs~~Ll----~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~  295 (394)
T COG2814         223 FMTGHFALYTYIRPFLESVAGFS--VSAVSLVLL----AFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTF  295 (394)
T ss_pred             HHcchhhhHHhHHHHHHHccCCC--HhHHHHHHH----HHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHH
Confidence            456667777777666665 7774  443333322    5669999999999999999 766666                


Q ss_pred             --------HHHHHHhhccccchhhhhhcccCC--cchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 --------LGYTITFSKGMVRLPNLIMFETFS--INIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 --------~~~~~~~~~~~~~~~~~~~~e~~p--~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                              ....+..+....+....+..++.+  ++.+..+.++.....++|..++..+...+.+
T Consensus       296 ~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~  360 (394)
T COG2814         296 TGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLD  360 (394)
T ss_pred             hcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    111122233333333344444444  6789999999999999998888888877765

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.72  E-value=0.0003  Score=55.91  Aligned_cols=102  Identities=10%  Similarity=0.044  Sum_probs=65.4

Q ss_pred             hHHHH-HhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHH-----------HHH-----------
Q 036778           15 YASSI-FDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLL-----------GYT-----------   71 (145)
Q Consensus        15 ~~~~i-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~-----------~~~-----------   71 (145)
                      +.+.+ .+..|.+  .........   ....++.+++.+++++++||+|||+.+.           .+.           
T Consensus       244 ~~~~~l~~~~G~s--~~~~g~~~~---~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~  318 (491)
T PRK11010        244 LTTTFLIRGVGFD--AGEVGLVNK---TLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYS  318 (491)
T ss_pred             HHHHHHHHhcCCC--HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            33444 4557874  443332221   1233678899999999999999988760           000           


Q ss_pred             -----HH----hhccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           72 -----IT----FSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        72 -----~~----~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                           +.    .+.+ .+..+++..+..|.+.+++..++.+....++..+.+.+.+++.+
T Consensus       319 l~~~~~l~~~~~g~~-~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~  377 (491)
T PRK11010        319 MGAAVFFENLCGGMG-TAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVE  377 (491)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 00    0111 12234677788999999999999998888888777777776665

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.72  E-value=5.8e-05  Score=56.79  Aligned_cols=93  Identities=13%  Similarity=0.085  Sum_probs=56.0

Q ss_pred             HHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------HHHH------
Q 036778           10 TAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------LGYT------   71 (145)
Q Consensus        10 ~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------~~~~------   71 (145)
                      ..+..+.|.++++ +|.+  ........    +...+...++.++++++.||+|||+.+           ....      
T Consensus       242 ~~~~~~~~~~~~~~~g~~--~~~~~~~~----~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (366)
T TIGR00886       242 LGVSSIFAMFFKDQFGLS--KVTAGAYA----SLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSP  315 (366)
T ss_pred             HHHHHHHHHHHHHHcCCc--HHHHHHHH----HHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCc
Confidence            3445566777765 6774  44333222    255678888999999999999998765           0000      


Q ss_pred             ------------HHhhcccc-chhhhhhcccCCcchhhhHHHHHHHHHHHH
Q 036778           72 ------------ITFSKGMV-RLPNLIMFETFSINIKGSAGSLVTFLHNNS  109 (145)
Q Consensus        72 ------------~~~~~~~~-~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~  109 (145)
                                  .....+.. +..+.+.+|+.| +.|++..|+....+++|
T Consensus       316 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       316 LSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             chHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence                        00011111 334566677776 57888888777665543

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=97.70  E-value=0.00036  Score=53.92  Aligned_cols=81  Identities=22%  Similarity=0.249  Sum_probs=58.0

Q ss_pred             hhhhhhhhHHHHHHHHHhhhCChHHH------------------------HHHHHHhhccc---cchhhhhhcccCC---
Q 036778           42 IQSLFQVPVVGSSVLLADKFGRRPLL------------------------LGYTITFSKGM---VRLPNLIMFETFS---   91 (145)
Q Consensus        42 ~~~~~~~~~~~~~~~l~Dr~grr~~~------------------------~~~~~~~~~~~---~~~~~~~~~e~~p---   91 (145)
                      ...++.+++.++.++++||+|||+.+                        .......+.+.   .+..+.+.+|..+   
T Consensus       265 ~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  344 (437)
T TIGR00792       265 IAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGE  344 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            55688889999999999999999987                        00000011111   1345567777754   


Q ss_pred             ----cchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           92 ----INIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        92 ----~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                          .+.+++..|+.+....++..+++.+.+++.+
T Consensus       345 ~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       345 WKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             hhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                5567888999999999999999988888765

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00901 2A0125 AmpG-related permease

Probab=97.68  E-value=0.00015  Score=54.70  Aligned_cols=53  Identities=6%  Similarity=-0.213  Sum_probs=34.0

Q ss_pred             HHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH
Q 036778           10 TAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL   67 (145)
Q Consensus        10 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~   67 (145)
                      .....+.|.+.++.|.+  .........   ....+..+++.++++++.||+|||+.+
T Consensus       226 ~~~~~~~~~~l~~~g~~--~~~~g~~~~---~~~~~~~~~g~~~~g~l~~r~g~~~~l  278 (356)
T TIGR00901       226 SAATVLTTLFLLDMGFS--KEEIALVAK---INGLLGAILGGLIGGIIMQPLNILYAL  278 (356)
T ss_pred             HHHHHHHHHHHHHcCCC--HHHHHHHhH---HHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            34445667777777774  443332222   011245678899999999999998887

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.67  E-value=0.00043  Score=53.14  Aligned_cols=107  Identities=10%  Similarity=-0.077  Sum_probs=55.4

Q ss_pred             HHHHHhHHHHH-hhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH---------------------
Q 036778           10 TAIAYYASSIF-DVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL---------------------   67 (145)
Q Consensus        10 ~~~~~~~~~i~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~---------------------   67 (145)
                      ..+..+.|... +++|.+  .....++.+   +........+.+.+++ .||+||||.+                     
T Consensus        32 ~~~~p~~~~~l~~~~~~s--~~~~g~~~~---~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~  105 (393)
T PRK15011         32 ALQTPTLSIFLTDEVHAR--PAMVGFFFT---GSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNY  105 (393)
T ss_pred             HHHHHHHHHHHHhhcCCC--HHHHHHHHH---HHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHH
Confidence            33444555554 458884  443333322   1223345555655666 9999998864                     


Q ss_pred             --HHHH-HHh---hccccchhhhhhcccCCcchhhh--HHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 --LGYT-ITF---SKGMVRLPNLIMFETFSINIKGS--AGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 --~~~~-~~~---~~~~~~~~~~~~~e~~p~~~R~~--~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                        +... ...   +....+....+..|..|++.|..  ..++......+|..+++.+..++.+
T Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~  168 (393)
T PRK15011        106 FVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAM  168 (393)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence              0000 000   11111333345556555554532  2356666677788888777776653

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.66  E-value=0.0003  Score=53.72  Aligned_cols=107  Identities=7%  Similarity=-0.101  Sum_probs=67.7

Q ss_pred             chHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCCh----HHH----------------
Q 036778            8 GSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRR----PLL----------------   67 (145)
Q Consensus         8 g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr----~~~----------------   67 (145)
                      +......+.|.+.++.|.  +.....+..+    .+.+...++.++.+.++||+|||    +.+                
T Consensus        19 ~~g~~~p~l~~~l~~~g~--s~~~iG~~~~----~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~   92 (382)
T PRK11128         19 AYGVFLPFWSVWLKGQGY--TPETIGLLLG----AGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWFGAH   92 (382)
T ss_pred             HHHHHhhhHHHHHHhcCC--CHHHHHHHHH----HHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence            334455567788888888  4555544444    77888999999999999999984    332                


Q ss_pred             -----HHHHHHhh---ccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 -----LGYTITFS---KGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 -----~~~~~~~~---~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                           ....+..+   ....+...++..+.  .+.|+++.+.....+.++..+++.+..++.+
T Consensus        93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~  153 (382)
T PRK11128         93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS  153 (382)
T ss_pred             cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence                 00001011   11123333444443  3457777788887788888888888877754

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.65  E-value=0.00037  Score=53.27  Aligned_cols=61  Identities=8%  Similarity=-0.098  Sum_probs=42.3

Q ss_pred             hhhhhchHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHH-HHHHhhhCChHHH
Q 036778            3 MQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSS-VLLADKFGRRPLL   67 (145)
Q Consensus         3 ~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~Dr~grr~~~   67 (145)
                      +.|--.......+.|.++++.|.+  .....+.  .+.+.+++..++..++. ++..||.||||.+
T Consensus        11 ~~~g~~~~~~~p~lp~~l~~~g~~--~~~iGl~--~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~   72 (390)
T TIGR02718        11 LSQGIPIGLAMDALPTLLREDGAP--LTALAFL--PLVGLPWVVKFLWAPLVDNWWSWRLGRRRSW   72 (390)
T ss_pred             HHHHhHHHHHHHHHHHHHHHcCCC--HHHHHHH--HHHHHHHHHHHHHHHHHhccccccCCcchhH
Confidence            345455566677899999999984  4433332  12346778887777777 5678999988885

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.63  E-value=0.00012  Score=54.65  Aligned_cols=101  Identities=9%  Similarity=0.001  Sum_probs=67.5

Q ss_pred             HHHHHh-hhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----------------------HHHHH
Q 036778           16 ASSIFD-VASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----------------------LGYTI   72 (145)
Q Consensus        16 ~~~i~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------------------~~~~~   72 (145)
                      .|.+++ .+|.+  +.....+.+    .-.+...+.+++.|.++||.||+..+                      .....
T Consensus       287 g~~fF~~rfGlS--~~~a~~i~s----~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~  360 (459)
T KOG4686|consen  287 GPMFFQKRFGLS--AVSAGNILS----TVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMT  360 (459)
T ss_pred             hHHHHHHhhCCC--hhhccchhh----hhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHH
Confidence            344444 48884  332222222    33456667788999999999999887                      11111


Q ss_pred             Hhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           73 TFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        73 ~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      +.+..   ..+..|..++-+.|.+.-+++.|+++.+.++|..+.+.+...+.+
T Consensus       361 ~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d  413 (459)
T KOG4686|consen  361 FLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIAD  413 (459)
T ss_pred             HHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeec
Confidence            11111   113357777888999999999999999999999999888877653

>PRK09528 lacY galactoside permease; Reviewed

Probab=97.63  E-value=0.00019  Score=55.42  Aligned_cols=81  Identities=7%  Similarity=0.084  Sum_probs=54.0

Q ss_pred             hhhhhhhhHHHHHHHHHhhhCChHHHH-----------------------HHHHHhhcccc---chhhhhhcccCCcchh
Q 036778           42 IQSLFQVPVVGSSVLLADKFGRRPLLL-----------------------GYTITFSKGMV---RLPNLIMFETFSINIK   95 (145)
Q Consensus        42 ~~~~~~~~~~~~~~~l~Dr~grr~~~~-----------------------~~~~~~~~~~~---~~~~~~~~e~~p~~~R   95 (145)
                      ...++..++.+..+++.||+|||+.+.                       ......+.+..   +....+..|.+|++.|
T Consensus       270 ~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~  349 (420)
T PRK09528        270 FQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLS  349 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccce
Confidence            556778889999999999999999870                       00000111110   1223566788999999


Q ss_pred             hhHHHH-HHHHHHHHHHHHHHHHHHHhh
Q 036778           96 GSAGSL-VTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        96 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      ++..+. .+....++..+++.+..++.+
T Consensus       350 a~~~~~~~~~~~~lg~~ig~~~~G~l~~  377 (420)
T PRK09528        350 ATIYLVGFQFAKQLGAVFLSTLAGNLYD  377 (420)
T ss_pred             eeeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence            887665 345567777787877777765

>PRK11043 putative transporter; Provisional

Probab=97.60  E-value=0.00068  Score=51.94  Aligned_cols=105  Identities=13%  Similarity=0.027  Sum_probs=63.9

Q ss_pred             HHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH------------HHHH-------
Q 036778           11 AIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL------------LGYT-------   71 (145)
Q Consensus        11 ~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~------------~~~~-------   71 (145)
                      ....+.|.+.++.|.+  ........    ....++..++....+++.||++||+..            ....       
T Consensus       221 ~~~~~~p~~~~~~g~s--~~~~g~~~----~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (401)
T PRK11043        221 AWLTGSPFILEQMGYS--PADIGLSY----VPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHP  294 (401)
T ss_pred             HHHHHhHHHHHHcCCC--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            3445667777777774  44333222    244567788888899999999988854            0000       


Q ss_pred             ---------HHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           72 ---------ITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        72 ---------~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                               ...+.+.+   +.......|..| +.|+++.++.+..+..++..++.+.+.+.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        295 SLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence                     00011111   222234446666 579999999998887777777777765543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=97.60  E-value=0.00064  Score=52.00  Aligned_cols=104  Identities=8%  Similarity=-0.020  Sum_probs=65.1

Q ss_pred             HHhHHHHHhhhCCCCCcchhhhheehhhhhhh-hhhhhHHHHHHHHHhhhCChHHHHHH---H-----HHh--h------
Q 036778           13 AYYASSIFDVASNKLSTKFGNFRISILRHIQS-LFQVPVVGSSVLLADKFGRRPLLLGY---T-----ITF--S------   75 (145)
Q Consensus        13 ~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~Dr~grr~~~~~~---~-----~~~--~------   75 (145)
                      ..+.+.+.++.|.  ++........    ... +...++.++.+++.||+|+|+.+...   .     ...  .      
T Consensus       228 ~~~~~~~l~~~G~--s~~~ig~~~~----~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  301 (390)
T TIGR02718       228 FGLSKLYLVDAGW--PLEWIGRLGM----AGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAP  301 (390)
T ss_pred             HHHhhHHHHhcCC--CHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCC
Confidence            3355666777888  4544443332    222 34556788899999999999987100   0     000  0      


Q ss_pred             ---------------cccc-chhhhhhcccCCc-chhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           76 ---------------KGMV-RLPNLIMFETFSI-NIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        76 ---------------~~~~-~~~~~~~~e~~p~-~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                                     .+.. +.......+..++ +.|++.+++.+....++..+++.+..++.+
T Consensus       302 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~  365 (390)
T TIGR02718       302 GIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTD  365 (390)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           0000 1122344455555 889999999999999999999988887765

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.59  E-value=0.00043  Score=59.75  Aligned_cols=99  Identities=10%  Similarity=-0.123  Sum_probs=62.9

Q ss_pred             HHhHHHHHhh-hCCCCCcc-hhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------
Q 036778           13 AYYASSIFDV-ASNKLSTK-FGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------   67 (145)
Q Consensus        13 ~~~~~~i~~~-~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------   67 (145)
                      ..+.|.++++ +|.+  .. ...++    .+...++.+++.++.+++.||+++|+.+                       
T Consensus       252 ~~~~~~~~~~~~g~s--~~~~~g~~----~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (1146)
T PRK08633        252 QANFPAYAKEVLGLD--NTFQVQYL----LAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASV  325 (1146)
T ss_pred             HHhhHHHHHHHhCCC--cHHHHHHH----HHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHH
Confidence            3445555554 7774  33 33333    2356688888999999999999988765                       


Q ss_pred             HHHHHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 036778           68 LGYTITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAF  117 (145)
Q Consensus        68 ~~~~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~  117 (145)
                      .+..+.++.+.   .+....++.+..|.+.|++++++.+.+..++..+++.+.
T Consensus       326 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~  378 (1146)
T PRK08633        326 LVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALT  378 (1146)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHH
Confidence            01111111111   133457788999999999999998887777665444333

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.57  E-value=0.00013  Score=57.32  Aligned_cols=104  Identities=14%  Similarity=0.049  Sum_probs=68.6

Q ss_pred             HHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhh--CChHHH-----------------------
Q 036778           13 AYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKF--GRRPLL-----------------------   67 (145)
Q Consensus        13 ~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~--grr~~~-----------------------   67 (145)
                      ..|.|.+.++.|.  +........+    +..++..++.++.+++.||.  ++|+..                       
T Consensus       261 ~~~l~~~~~~~g~--s~~~~g~~~~----~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~  334 (455)
T TIGR00892       261 IIFLVPYAKDKGV--DEYEAAFLLS----IIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYT  334 (455)
T ss_pred             HHHHHHHHHHcCC--CHHHHHHHHH----HHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            3456777777777  3444443333    55677888888999999974  333222                       


Q ss_pred             --HHHHHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 --LGYTITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 --~~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                        ......++.+.+   +..+.+..|.+|.+.|++++++.+....++.++++.+..++.+
T Consensus       335 ~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  394 (455)
T TIGR00892       335 GLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD  394 (455)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence              011111111211   3345677899999999999999999999999998888876654

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.51  E-value=0.00099  Score=50.41  Aligned_cols=51  Identities=8%  Similarity=0.075  Sum_probs=34.1

Q ss_pred             HHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH
Q 036778           11 AIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL   67 (145)
Q Consensus        11 ~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~   67 (145)
                      ....+.|.+..+ .|.  ++........    ...++..++.++.+++.||+|||+.+
T Consensus       212 ~~~~~~~~~~~~~~g~--s~~~~g~~~~----~~~~~~~~~~~~~g~l~~r~g~~~~~  263 (377)
T PRK11102        212 SFLTAGPFVYIELNGV--SPQNFGYYFA----LNIVFLFVMTIINSRFVRRVGALNML  263 (377)
T ss_pred             HHHHcCHHHHHHHhCC--CHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            333344555544 677  3443333322    55688888999999999999999877

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.50  E-value=0.00013  Score=56.58  Aligned_cols=106  Identities=19%  Similarity=0.199  Sum_probs=69.9

Q ss_pred             HHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhh--CChHHH--------------------
Q 036778           11 AIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKF--GRRPLL--------------------   67 (145)
Q Consensus        11 ~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~--grr~~~--------------------   67 (145)
                      .+..+.|.++.+ .|++  ........+    .+=+++++|++++||++||.  |||...                    
T Consensus       270 gi~dW~p~YL~e~k~~s--~~~a~~a~~----lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~  343 (448)
T COG2271         270 GINDWGPLYLSEVKGFS--LVKANWAIS----LFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPN  343 (448)
T ss_pred             HHhhhHHHHHHHhcCCC--HHHHHHHHH----HHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCC
Confidence            345678888876 5553  333333333    55688999999999999997  788776                    


Q ss_pred             --------HHH-HHHhhccccchhhhhhcccCCcchhhhHHHHHHHHHHH-HHHHHHHHHHHHhh
Q 036778           68 --------LGY-TITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNN-SNSLVAYAFNFMIE  122 (145)
Q Consensus        68 --------~~~-~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~  122 (145)
                              .++ +.++-.++.-+.-....|..|++.-+++.|+...++.+ |...+....+++.+
T Consensus       344 ~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d  408 (448)
T COG2271         344 GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIAD  408 (448)
T ss_pred             ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEe
Confidence                    001 11111122222334567999999999999999988888 66666666666644

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.50  E-value=0.00044  Score=54.77  Aligned_cols=113  Identities=11%  Similarity=0.070  Sum_probs=75.1

Q ss_pred             hhhhhchHHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCCh--------HHH------
Q 036778            3 MQTLGGSTAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRR--------PLL------   67 (145)
Q Consensus         3 ~~~~~g~~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr--------~~~------   67 (145)
                      +++..+.+.+..|.|+++++ +|++  .....    ++++.+.+...+..+++|.++||.-+|        |.+      
T Consensus       268 f~~~~~~~~l~~y~PtY~~~VL~f~--v~~~G----~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~  341 (466)
T KOG2532|consen  268 FGGNWGFYLLLTYLPTYLKEVLGFD--VRETG----FLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFG  341 (466)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhCCC--hhhhh----HHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHH
Confidence            45667788888999999998 8884  44333    445599999999999999999999664        222      


Q ss_pred             ---------------------HHHHHHhhccccchhhhhhcccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           68 ---------------------LGYTITFSKGMVRLPNLIMFETF-SINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        68 ---------------------~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                                           .++....+.......-.+..-.- .++.-+..+|+.+.+..+.+++.|.+.+.+.
T Consensus       342 ~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~  417 (466)
T KOG2532|consen  342 GPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIV  417 (466)
T ss_pred             HHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEe
Confidence                                 11111111111111112223333 6667788888888888888888888877665

>TIGR01272 gluP glucose/galactose transporter

Probab=97.49  E-value=0.00086  Score=50.23  Aligned_cols=104  Identities=3%  Similarity=-0.063  Sum_probs=63.8

Q ss_pred             HHHHhHHHHHhh---hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHH---------H---------
Q 036778           11 AIAYYASSIFDV---ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLL---------G---------   69 (145)
Q Consensus        11 ~~~~~~~~i~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~---------~---------   69 (145)
                      .+..+.+.++++   .|.  ++.......+    .++.+.++|.++++++.||+|+||.+.         .         
T Consensus       158 ~~~~w~~~yl~~~~~~g~--s~~~a~~~~s----~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~  231 (310)
T TIGR01272       158 SAGSFLVNFLSDPHALGL--PEDQAAHFTA----YTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGY  231 (310)
T ss_pred             HHHHHHHHHHHhcccCCC--CHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence            344466677754   355  4444444434    788999999999999999999988870         0         


Q ss_pred             ----HHHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           70 ----YTITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        70 ----~~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                          .....+.+.   .|.......+.+|.+ .+++.++. .++.+|+.+.|.+...+.+
T Consensus       232 ~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad  289 (310)
T TIGR01272       232 VAMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLAD  289 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHH
Confidence                000011111   144445666777754 33455553 5667888888887776654

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.47  E-value=0.00089  Score=51.14  Aligned_cols=100  Identities=17%  Similarity=0.141  Sum_probs=57.2

Q ss_pred             hHHHHHh-hhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----------H--------------H
Q 036778           15 YASSIFD-VASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----------L--------------G   69 (145)
Q Consensus        15 ~~~~i~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------~--------------~   69 (145)
                      |.+.+++ ..|.  ++........    ...++..++.++.+++.||+|+|+..          .              .
T Consensus       221 ~~~~~~~~~~g~--s~~~~~~~~~----~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  294 (382)
T PRK10091        221 YIKPYMMFISGF--SETSMTFIMM----LVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLI  294 (382)
T ss_pred             HHHHHHHHhcCC--CHHHHHHHHH----HHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            4444444 4677  3443333322    56688999999999999999999887          0              0


Q ss_pred             HHHHhhcccc---c-hhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           70 YTITFSKGMV---R-LPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        70 ~~~~~~~~~~---~-~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      .....+.+..   + .......+..|.+.++.+  ..+....+|..+++.+..++.+
T Consensus       295 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~  349 (382)
T PRK10091        295 FAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLT  349 (382)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHH
Confidence            0000001111   1 111233344455545443  3456677888888888877765

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=97.41  E-value=0.00071  Score=54.37  Aligned_cols=81  Identities=21%  Similarity=0.141  Sum_probs=56.8

Q ss_pred             hhhhhhhhhHHHHHHHHHhhhCChHHH--------------------------HHHHHHhhccc-----cchhhhhhccc
Q 036778           41 HIQSLFQVPVVGSSVLLADKFGRRPLL--------------------------LGYTITFSKGM-----VRLPNLIMFET   89 (145)
Q Consensus        41 ~~~~~~~~~~~~~~~~l~Dr~grr~~~--------------------------~~~~~~~~~~~-----~~~~~~~~~e~   89 (145)
                      +...+-.++.++++|.++||++|||++                          .++...+..+.     .|.-.++++|+
T Consensus        52 ~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~l  131 (524)
T PF05977_consen   52 AASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPEL  131 (524)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            355577778889999999999999998                          11111111111     24456789999


Q ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           90 FSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        90 ~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                      .|++....+.++.....++...++|.+.+.+.
T Consensus       132 V~~~~L~~A~al~s~~~niar~iGPalgG~Lv  163 (524)
T PF05977_consen  132 VPKEDLPAANALNSISFNIARIIGPALGGILV  163 (524)
T ss_pred             ccHhhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            99999999999988877776666665555444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.34  E-value=0.00046  Score=53.46  Aligned_cols=108  Identities=14%  Similarity=0.126  Sum_probs=68.6

Q ss_pred             hchHHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH------------------
Q 036778            7 GGSTAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL------------------   67 (145)
Q Consensus         7 ~g~~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~------------------   67 (145)
                      .+...++.+.|.++++ +|.+  .......    .+..-+.+.+.-+.+|+++||+|.+|.+                  
T Consensus       232 G~Fvgfs~~l~~~~~~~fg~~--~~~Ag~~----a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~  305 (417)
T COG2223         232 GGFVGFSAYLPMYLVTQFGLS--PVTAGLI----AFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFL  305 (417)
T ss_pred             HHHHHHHHHHHHHHHHhcCCC--hhhHHHH----HHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccc
Confidence            3445566788888875 7885  3322222    2244477777888999999999988887                  


Q ss_pred             ----------------HHHHHHhhccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 ----------------LGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 ----------------~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                                      +....+.+.+-+ ..+..++.+||. .-+...|++.+++.+|++..|..+....+
T Consensus       306 ~~~~~~~~~~~~~~~~l~l~~~~G~GnG-svfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~  374 (417)
T COG2223         306 TGFGHGGSFVVFVAVFLALFVFAGLGNG-SVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLD  374 (417)
T ss_pred             cccccCcchHHHHHHHHHHHHHhccCcc-hheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHH
Confidence                            011111122222 344667777776 34566788888888888777777665543

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.27  E-value=0.00023  Score=56.25  Aligned_cols=94  Identities=11%  Similarity=-0.048  Sum_probs=61.4

Q ss_pred             hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhh-CChHHHH-------------------------HHHHHhhc
Q 036778           23 ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKF-GRRPLLL-------------------------GYTITFSK   76 (145)
Q Consensus        23 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~-grr~~~~-------------------------~~~~~~~~   76 (145)
                      +|++  ...+..+.+    .|...--+..+++||++||+ |+|+.+.                         .......+
T Consensus        56 Lg~~--~~~A~~l~~----~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~i  129 (498)
T COG3104          56 LGFD--ETHATGLFS----AYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIV  129 (498)
T ss_pred             CCcC--hHhhHHHHH----HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHh
Confidence            4473  444444433    44444445778999999997 9888870                         00000011


Q ss_pred             ccc---chhhhhhcccCCcch--hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           77 GMV---RLPNLIMFETFSINI--KGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        77 ~~~---~~~~~~~~e~~p~~~--R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      |.+   +..-.+.+|.+|++.  |..+.++-++..++|+++.+.+.+++.+
T Consensus       130 G~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~  180 (498)
T COG3104         130 GTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI  180 (498)
T ss_pred             ccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH
Confidence            111   444468889987765  7777888888889999999999998876

>PRK09848 glucuronide transporter; Provisional

Probab=97.21  E-value=0.0014  Score=51.12  Aligned_cols=79  Identities=15%  Similarity=0.122  Sum_probs=51.6

Q ss_pred             hhhhhhHHHHHHHHHhhhCChHHHH----H---------------------HHHHhhccc---cchhhhhhcccCCc---
Q 036778           44 SLFQVPVVGSSVLLADKFGRRPLLL----G---------------------YTITFSKGM---VRLPNLIMFETFSI---   92 (145)
Q Consensus        44 ~~~~~~~~~~~~~l~Dr~grr~~~~----~---------------------~~~~~~~~~---~~~~~~~~~e~~p~---   92 (145)
                      .+..+++.++.+++.||+|+|+.+.    +                     .....+.+.   .+..++..+|..|.   
T Consensus       274 ~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~  353 (448)
T PRK09848        274 LVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEY  353 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            3556778889999999999999870    0                     000011111   13344566666654   


Q ss_pred             ----chhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           93 ----NIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        93 ----~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                          +.++...++......++..+++.+...+..
T Consensus       354 ~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~  387 (448)
T PRK09848        354 LTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG  387 (448)
T ss_pred             hhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                345888888888888888888877766654

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.19  E-value=0.0038  Score=47.97  Aligned_cols=101  Identities=9%  Similarity=-0.171  Sum_probs=60.3

Q ss_pred             hHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHH---------HHH-------------
Q 036778           15 YASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLL---------GYT-------------   71 (145)
Q Consensus        15 ~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~---------~~~-------------   71 (145)
                      +.|.++++ .|.+  +.......    ....++..++.+..+++.||++||+.+.         ...             
T Consensus       237 ~~p~~~~~~~g~~--~~~~g~~~----~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  310 (406)
T PRK15402        237 LSPVILISGEQLS--SYEYGLLQ----VPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYL  310 (406)
T ss_pred             HhHHHHHHHhCCC--HHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHH
Confidence            45666544 6773  43332221    1334667788899999999999999770         000             


Q ss_pred             ------HHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           72 ------ITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        72 ------~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                            ..++.+.+   +...... ...+.+.|++..+.......++..+++.+...+..
T Consensus       311 ~~~~~~~~~g~g~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~  369 (406)
T PRK15402        311 WLTAGLSLYAFGIGLANAGLYRLT-LFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYL  369 (406)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHH-hhhccccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  00111111   1111122 22344789999999998888888888887777654

>PRK09669 putative symporter YagG; Provisional

Probab=97.18  E-value=0.00098  Score=52.02  Aligned_cols=99  Identities=9%  Similarity=-0.039  Sum_probs=58.9

Q ss_pred             HHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhh----hCChHHHH------------------
Q 036778           12 IAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK----FGRRPLLL------------------   68 (145)
Q Consensus        12 ~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr----~grr~~~~------------------   68 (145)
                      +..|.+.++.+ +|+  +......+..    +.-+.-.+..++.|+++||    +||||.++                  
T Consensus        28 ~~~~l~~~~t~~~gl--s~~~~g~i~~----i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p  101 (444)
T PRK09669         28 VMLFLAYFYTDVFGL--SAAIMGTMFL----VVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTP  101 (444)
T ss_pred             HHHHHHHHHHHhcCC--CHHHHHHHHH----HHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCC
Confidence            34455555554 888  4544443333    5667778888999999999    66655540                  


Q ss_pred             ----------------HHHHHhhccccchhhhhhcccC-CcchhhhHHHHHHHHHHHHHHHHHHHH
Q 036778           69 ----------------GYTITFSKGMVRLPNLIMFETF-SINIKGSAGSLVTFLHNNSNSLVAYAF  117 (145)
Q Consensus        69 ----------------~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~~  117 (145)
                                      ++...+.. ......++.+|+. +.+.|.+..+.......+|+.+.+.+.
T Consensus       102 ~~~~~~~~~~~~~~~~l~~~~~t~-~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~  166 (444)
T PRK09669        102 DFGATGKIIYACVTYILLSLVYTA-INVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIA  166 (444)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHh-hcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            00001111 1111235777877 557799888887777777766665543

>PRK10133 L-fucose transporter; Provisional

Probab=97.17  E-value=0.0021  Score=50.40  Aligned_cols=100  Identities=9%  Similarity=0.017  Sum_probs=57.2

Q ss_pred             HhHHHH-Hhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHH---------H-------------
Q 036778           14 YYASSI-FDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLL---------G-------------   69 (145)
Q Consensus        14 ~~~~~i-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~---------~-------------   69 (145)
                      .|.+.+ .++ .|.  ++........    .+.++.+++.+.++++.||+|||+++.         +             
T Consensus       279 ~~~~~~l~~~~~g~--s~~~ag~~~~----~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  352 (438)
T PRK10133        279 SYLIRYAVEEIPGM--TAGFAANYLT----GTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLI  352 (438)
T ss_pred             HHHHHHHhhhcCCC--CHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence            355545 343 577  4544443333    666889999999999999999998870         0             


Q ss_pred             HHHHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           70 YTITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        70 ~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                      .....+.+   ..|..+....|.+|.+ .+.+.++.. +...++.+.+.+...+.
T Consensus       353 ~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~  405 (438)
T PRK10133        353 ALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVS  405 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHH
Confidence            00011111   1144455666777653 345555554 33455566665555543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=97.17  E-value=0.0043  Score=48.12  Aligned_cols=104  Identities=10%  Similarity=-0.121  Sum_probs=74.7

Q ss_pred             hHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH------------------------HHH
Q 036778           15 YASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL------------------------LGY   70 (145)
Q Consensus        15 ~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~------------------------~~~   70 (145)
                      ..|.+-+.++.+  ..+...+--    ++..+.++.++..+++++|+|+|+-+                        +..
T Consensus        35 Lip~l~~~f~ls--~~~a~liqf----aff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL  108 (422)
T COG0738          35 LIPHLKEVFDLT--YFEASLIQF----AFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFL  108 (422)
T ss_pred             hHHHHHHHhCcc--HHHHHHHHH----HHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence            456666666663  333333333    67788999999999999999999988                        111


Q ss_pred             H--HHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 036778           71 T--ITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIEWS  124 (145)
Q Consensus        71 ~--~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (145)
                      .  +..+.|.+   ...-.|++.+.|++..++-+.+.+..+.+|++++|.+..+++.|+
T Consensus       109 ~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~  167 (422)
T COG0738         109 VALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSG  167 (422)
T ss_pred             HHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            1  11122222   334468888999988999999999999999999999998888765

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=97.16  E-value=0.0049  Score=47.09  Aligned_cols=104  Identities=13%  Similarity=0.071  Sum_probs=60.1

Q ss_pred             HHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------H
Q 036778           12 IAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------L   68 (145)
Q Consensus        12 ~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~   68 (145)
                      ...+.|.+.++.|.  ++.......+    ...+..++..+..+++.||+|+|+.+                       .
T Consensus       224 ~~~~~~~~~~~~g~--s~~~~g~~~~----~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  297 (382)
T PRK11128        224 YYGFSAIYWQAAGY--SASTIGYLWS----LGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLI  297 (382)
T ss_pred             HHHHHHHHHHHCCC--CHhHHHHHHH----HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            34455666677777  3443333322    44577788888999999999999987                       0


Q ss_pred             HHHHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 036778           69 GYTITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFL-HNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        69 ~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~-~~~~~~~~~~~~~~~~~  122 (145)
                      ...+.++.+.+   +....+..+. +++.+++..++.... ..++..+++.+.+.+.+
T Consensus       298 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~  354 (382)
T PRK11128        298 VIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ  354 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111111111   2223455665 555667778776533 33455666766666654

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.16  E-value=0.0027  Score=49.35  Aligned_cols=79  Identities=16%  Similarity=0.060  Sum_probs=52.5

Q ss_pred             hhhhhhhhHHHHHHHHHhhhCChHHH-------------------------HHHHHHhhccccchhhhhhcccCCcchhh
Q 036778           42 IQSLFQVPVVGSSVLLADKFGRRPLL-------------------------LGYTITFSKGMVRLPNLIMFETFSINIKG   96 (145)
Q Consensus        42 ~~~~~~~~~~~~~~~l~Dr~grr~~~-------------------------~~~~~~~~~~~~~~~~~~~~e~~p~~~R~   96 (145)
                      .++.+..+|.++++++.||+++|+.+                         +.....+.....|..+....+.++++.+.
T Consensus       277 ~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~  356 (410)
T TIGR00885       277 GAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKY  356 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            45577889999999999999999877                         00111111122256667777888877665


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           97 SAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      .+.++...  .+|+.+.|.+..++.+
T Consensus       357 ~s~~l~~~--~~Gga~~p~l~G~~~d  380 (410)
T TIGR00885       357 GAAGLVMA--IIGGGIVPPLQGFIID  380 (410)
T ss_pred             hHHHHHHH--HhccchHHHHHHHHHH
Confidence            55555543  3788888888777754

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=97.15  E-value=0.0021  Score=50.69  Aligned_cols=100  Identities=7%  Similarity=-0.050  Sum_probs=58.6

Q ss_pred             HHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhh----hCChHHH---------HHHHHHhh-
Q 036778           11 AIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK----FGRRPLL---------LGYTITFS-   75 (145)
Q Consensus        11 ~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr----~grr~~~---------~~~~~~~~-   75 (145)
                      .+..|.+.++.+ +|+  ++.....+.    ++.-+.-.+..++.|+++||    +||||.+         ..+...+. 
T Consensus        24 ~~~~~l~~yyt~v~Gl--s~~~vg~i~----~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~   97 (473)
T PRK10429         24 IVYMYLMYYYTDVVGL--SVGLVGTLF----LVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSA   97 (473)
T ss_pred             HHHHHHHHHHHHhcCC--CHHHHHHHH----HHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcC
Confidence            344556666665 688  454433333    35667778888999999994    5986654         00000110 


Q ss_pred             --------------------c--cc-cchhhhhhcccC-CcchhhhHHHHHHHHHHHHHHHHHHH
Q 036778           76 --------------------K--GM-VRLPNLIMFETF-SINIKGSAGSLVTFLHNNSNSLVAYA  116 (145)
Q Consensus        76 --------------------~--~~-~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~  116 (145)
                                          .  +. .....++.+|+. +.+.|.+..++......+++.+.+.+
T Consensus        98 p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~  162 (473)
T PRK10429         98 HLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGF  162 (473)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                0  00 011235678987 58889998888666666665555443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.11  E-value=0.0034  Score=48.12  Aligned_cols=81  Identities=10%  Similarity=0.110  Sum_probs=52.3

Q ss_pred             hhhhhhhhHHHHHHHHHhhhCChHHHHH-----------------------HHHHhhcccc---chhhhhhcccCCcchh
Q 036778           42 IQSLFQVPVVGSSVLLADKFGRRPLLLG-----------------------YTITFSKGMV---RLPNLIMFETFSINIK   95 (145)
Q Consensus        42 ~~~~~~~~~~~~~~~l~Dr~grr~~~~~-----------------------~~~~~~~~~~---~~~~~~~~e~~p~~~R   95 (145)
                      ...+...++.+..+++.||+|||+.+..                       .....+.+..   .....+..|..|++.|
T Consensus       262 ~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~  341 (396)
T TIGR00882       262 MGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLS  341 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceE
Confidence            5557778888999999999999998700                       0000011100   1122355677888888


Q ss_pred             hhHHHH-HHHHHHHHHHHHHHHHHHHhh
Q 036778           96 GSAGSL-VTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        96 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      +++.+. .+....++..+++.+..++.+
T Consensus       342 at~~~~~~~~~~~lg~~~~~~l~G~l~~  369 (396)
T TIGR00882       342 ATIYLIGFQFAKQLAMIFLSTLAGNMYD  369 (396)
T ss_pred             EEeehHHHHHHHHHHHHHHHHhHHHHHH
Confidence            887766 456677788888877777754

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.08  E-value=0.0037  Score=47.73  Aligned_cols=48  Identities=10%  Similarity=-0.028  Sum_probs=32.6

Q ss_pred             HhHHHHHh-hhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH
Q 036778           14 YYASSIFD-VASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL   67 (145)
Q Consensus        14 ~~~~~i~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~   67 (145)
                      .+.|.+.. +.|.+  .......    .+...++.+++.+..+++.||+|||+.+
T Consensus       224 ~~~~~~~~~~~g~~--~~~~~~~----~~~~~~~~i~~~~~~~~l~~r~g~~~~~  272 (392)
T PRK10473        224 NTSPVLLMEQMGFS--RGEYAII----MALTAGVSMTVSFSTPFALGIFKPRTLM  272 (392)
T ss_pred             HhCHHHHHHHcCCC--HHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            34455554 46774  3333222    2255688889999999999999999987

>PRK11462 putative transporter; Provisional

Probab=97.03  E-value=0.0077  Score=47.52  Aligned_cols=81  Identities=7%  Similarity=-0.009  Sum_probs=49.1

Q ss_pred             hhhhhhhhHHHHHHHHHhhhCChHHHH---------HHH----------------HHhhcc---ccchhhhhhcccCC--
Q 036778           42 IQSLFQVPVVGSSVLLADKFGRRPLLL---------GYT----------------ITFSKG---MVRLPNLIMFETFS--   91 (145)
Q Consensus        42 ~~~~~~~~~~~~~~~l~Dr~grr~~~~---------~~~----------------~~~~~~---~~~~~~~~~~e~~p--   91 (145)
                      .+.+..+++.+++++++||+|+|+.+.         ...                ...+.+   ..+..+.+.+|...  
T Consensus       271 ~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~  350 (460)
T PRK11462        271 TYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYG  350 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence            555778888999999999999998860         000                000000   01233556666544  


Q ss_pred             ---cchhhhHH--HHHHHHHHHHHHHHHHHHHHHhh
Q 036778           92 ---INIKGSAG--SLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        92 ---~~~R~~~~--~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                         +..|..+.  +.......++..+++.+.+++..
T Consensus       351 e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~  386 (460)
T PRK11462        351 EWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA  386 (460)
T ss_pred             HHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               33555555  44446777788887777766654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=97.01  E-value=0.006  Score=47.39  Aligned_cols=108  Identities=12%  Similarity=0.115  Sum_probs=68.3

Q ss_pred             chHHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-------------------
Q 036778            8 GSTAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-------------------   67 (145)
Q Consensus         8 g~~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-------------------   67 (145)
                      +......+.+++.+. ++.+   ......    .....+..+++.++.++++||+|+|+.+                   
T Consensus       240 ~~~~~~~~~~y~~~~vl~~~---~~~~~~----~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~  312 (428)
T PF13347_consen  240 AFALMNTFLPYYFTYVLGNE---GLISIF----MLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP  312 (428)
T ss_pred             hhhhhhhHHHHHHHHHhcCc---hhhHHH----HHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh
Confidence            334444455566665 4553   212222    2255688899999999999999999988                   


Q ss_pred             ------HHHHHHhhc---cccchhhhhhcccCCc-------chhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 ------LGYTITFSK---GMVRLPNLIMFETFSI-------NIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 ------~~~~~~~~~---~~~~~~~~~~~e~~p~-------~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                            .......+.   .....++++.+|+.+.       +..+...|+......++..+++.+...+..
T Consensus       313 ~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~  383 (428)
T PF13347_consen  313 GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA  383 (428)
T ss_pred             hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence                  011111111   1125667888888763       335677777777888888888888777766

>PF13347 MFS_2: MFS/sugar transport protein

Probab=96.95  E-value=0.00083  Score=52.18  Aligned_cols=101  Identities=15%  Similarity=0.206  Sum_probs=63.9

Q ss_pred             hHHHHH-hhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHh----hhCChHHH---------HHHHHH-------
Q 036778           15 YASSIF-DVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLAD----KFGRRPLL---------LGYTIT-------   73 (145)
Q Consensus        15 ~~~~i~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D----r~grr~~~---------~~~~~~-------   73 (145)
                      |.+.+. +.+|++  +.....+..    +.-+...+..++.|.++|    |+||||.+         ..+...       
T Consensus        23 ~~~~f~~~~~gl~--~~~~g~i~~----~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~   96 (428)
T PF13347_consen   23 YLLYFYTDVLGLS--PALAGLILL----VGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAG   96 (428)
T ss_pred             HHHHHHHHHcCCC--HHHHHHHHH----HHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccch
Confidence            444444 457994  543333333    556777778889999999    78988887         000000       


Q ss_pred             ----------------hhcc--cc-chhhhhhcccCC-cchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           74 ----------------FSKG--MV-RLPNLIMFETFS-INIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        74 ----------------~~~~--~~-~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                                      +..+  .. ....++.+|+.+ .+.|.+..+.......+|..+.+.+.+.+.
T Consensus        97 ~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~  164 (428)
T PF13347_consen   97 LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILV  164 (428)
T ss_pred             hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Confidence                            0000  00 112367889987 567999999998888888876666666555

>TIGR00889 2A0110 nucleoside transporter

Probab=96.91  E-value=0.0051  Score=47.87  Aligned_cols=54  Identities=9%  Similarity=-0.095  Sum_probs=36.3

Q ss_pred             chHHHHHhHHHHH-hhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCC-hHHH
Q 036778            8 GSTAIAYYASSIF-DVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGR-RPLL   67 (145)
Q Consensus         8 g~~~~~~~~~~i~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~gr-r~~~   67 (145)
                      .......+.+..+ ++.|.  +..+..++.    +.+.++.++++++.|.++||+|| |+.+
T Consensus        17 ~~~~~~~~l~~~l~~~~g~--s~~~iGl~~----a~~~~~~~i~~~~~g~l~dr~g~~r~~~   72 (418)
T TIGR00889        17 IWGSWLVTLGSYMSKTLHF--SGAEIGWVY----SSTGIAAILMPILVGIIADKWLSAQKVY   72 (418)
T ss_pred             HHHHHHHHHHHHHHHhcCC--CHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence            3333333444444 45788  455544444    48889999999999999999966 5554

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=96.91  E-value=0.0053  Score=49.11  Aligned_cols=83  Identities=14%  Similarity=-0.038  Sum_probs=63.6

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HH---HHHHhhccccchhhhhhcccCC
Q 036778           38 ILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LG---YTITFSKGMVRLPNLIMFETFS   91 (145)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~---~~~~~~~~~~~~~~~~~~e~~p   91 (145)
                      .+..+++++..++.+.++++.||++-++.+                       ..   +...+..+..|..-.+.+..+.
T Consensus        85 ~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~  164 (495)
T KOG2533|consen   85 VLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYG  164 (495)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcC
Confidence            445589999999999999999999966555                       11   1111122333555578999999


Q ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036778           92 INIKGSAGSLVTFLHNNSNSLVAYAFNFM  120 (145)
Q Consensus        92 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~  120 (145)
                      .+.|++-+++......+|+++++.+...+
T Consensus       165 ~~e~g~r~~~~~a~~~~g~i~ggliA~g~  193 (495)
T KOG2533|consen  165 KSERGLRMGIWYASASLGNIFGGLIAYGV  193 (495)
T ss_pred             hhhhhhhHHHHHHhcchhhHHHHHHHHHh
Confidence            99999999999998899998888888774

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=96.86  E-value=0.0033  Score=45.90  Aligned_cols=105  Identities=11%  Similarity=0.077  Sum_probs=67.3

Q ss_pred             hHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH---------------------
Q 036778            9 STAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL---------------------   67 (145)
Q Consensus         9 ~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~---------------------   67 (145)
                      .+..+.|.|.+-+.+|++  ..+.+.+..    .-+++..+| ++.|.+.||.|.+.++                     
T Consensus        18 ~Y~Fs~yS~~Lk~~l~~s--q~~l~~l~~----~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~   90 (250)
T PF06813_consen   18 TYTFSAYSPQLKSRLGYS--QSQLNTLST----AGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGR   90 (250)
T ss_pred             ccchhhhhHHHHHHhCCC--HHHHHHHHH----HHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            456677999998889995  444433332    344666654 7889999999999987                     


Q ss_pred             --------HH-HHHH--hhcccc-chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           68 --------LG-YTIT--FSKGMV-RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        68 --------~~-~~~~--~~~~~~-~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                              +. +...  .+.++. .....-..+.||. .|+++.|+.-....+++.+.+.+...+.
T Consensus        91 i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen   91 IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence                    11 1111  111111 1122233478984 7999999999888888888777664443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=96.85  E-value=0.018  Score=44.35  Aligned_cols=100  Identities=11%  Similarity=0.011  Sum_probs=57.1

Q ss_pred             HHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HHHHH
Q 036778           16 ASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LGYTI   72 (145)
Q Consensus        16 ~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~~~~   72 (145)
                      .|.+.++.|.+  .........    .+.++..++.++.+++.||.+|+...                       .....
T Consensus       240 ~p~~~~~~g~s--~~~~g~~~~----~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  313 (394)
T PRK10213        240 RPVYMNLAGFG--VDGLTLVLL----SFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWGSDKIVATGVAI  313 (394)
T ss_pred             HHHHHHhcCCC--hhHHHHHHH----HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            46677777884  433222222    45578888899999999996555433                       00001


Q ss_pred             Hhhccc--c-chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           73 TFSKGM--V-RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        73 ~~~~~~--~-~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      .++.+.  . +....+..+..|. .+++..+.......++..+++.+..++.+
T Consensus       314 l~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~  365 (394)
T PRK10213        314 IWGLTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYALD  365 (394)
T ss_pred             HHHHHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111111  1 1122345666663 35566666666677788888888777764

>PRK09669 putative symporter YagG; Provisional

Probab=96.84  E-value=0.0088  Score=46.70  Aligned_cols=81  Identities=14%  Similarity=0.023  Sum_probs=53.0

Q ss_pred             hhhhhhhhHHHHHHHHHhhhCChHHHH----H----HH-----------------HHhhc---cccchhhhhhcccCC--
Q 036778           42 IQSLFQVPVVGSSVLLADKFGRRPLLL----G----YT-----------------ITFSK---GMVRLPNLIMFETFS--   91 (145)
Q Consensus        42 ~~~~~~~~~~~~~~~l~Dr~grr~~~~----~----~~-----------------~~~~~---~~~~~~~~~~~e~~p--   91 (145)
                      ...+..+++.++.++++||+|+|+.+.    .    ..                 ...+.   ...+..+++.+|+.+  
T Consensus       272 ~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~  351 (444)
T PRK09669        272 TGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYE  351 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            344666778888899999999999870    0    00                 00011   111445677888775  


Q ss_pred             -----cchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           92 -----INIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        92 -----~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                           .+..+...++......++..+++.+...+.+
T Consensus       352 e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        352 EKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             hhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 3334556677777888888888888877766

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=96.82  E-value=0.0016  Score=52.24  Aligned_cols=101  Identities=11%  Similarity=0.094  Sum_probs=67.0

Q ss_pred             HhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH------------------------HH
Q 036778           14 YYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL------------------------LG   69 (145)
Q Consensus        14 ~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~------------------------~~   69 (145)
                      .+.+.+.++++.+  .....++.+    +...+..+..++.+.+.||+|.|.+.                        +.
T Consensus        67 v~~~~~~~~f~~s--~~~~~~i~s----l~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt  140 (509)
T KOG2504|consen   67 LLFEELMDYFGSS--SSQIAWIGS----LLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLT  140 (509)
T ss_pred             hhHHHHHHHhCCC--ccHHHHHHH----HHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            3456677778774  333444444    55566677778999999999999988                        12


Q ss_pred             HHHHhhcccc----chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           70 YTITFSKGMV----RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        70 ~~~~~~~~~~----~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      +.+..+.|.+    |.. ..++ .+-.+.|+.+.|+......+|.++.+.+.-++.+
T Consensus       141 ~gvi~G~G~~~~~~pai-viv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~  195 (509)
T KOG2504|consen  141 FGVIGGLGLGLIYLPAV-VILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLS  195 (509)
T ss_pred             HHHHhhccchhhhcchh-hhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHH
Confidence            2222233322    222 3333 4556789999999998888888888888877765

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=96.82  E-value=0.013  Score=45.69  Aligned_cols=106  Identities=10%  Similarity=0.055  Sum_probs=71.9

Q ss_pred             HHHHhHHHHHhhhC-CCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH--------HHHH----------
Q 036778           11 AIAYYASSIFDVAS-NKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL--------LGYT----------   71 (145)
Q Consensus        11 ~~~~~~~~i~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------~~~~----------   71 (145)
                      ....|.+.++++.| .+  ......+    .+...++.++.....+++..|+|.|+++        .++.          
T Consensus       225 ~~~~f~~~yl~~~gg~~--~~~~g~~----~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~  298 (400)
T PF03825_consen  225 AYYTFFSIYLQELGGYS--GSTIGIL----WALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWP  298 (400)
T ss_pred             HHHHHHHHHHHHcccch--hhHHHHH----HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence            34456677788887 42  3322222    2245578888889999999999999998        0000          


Q ss_pred             ------H----Hhhcccc---chhhhhhcccCCcchhhhHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 036778           72 ------I----TFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFL-HNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        72 ------~----~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~-~~~~~~~~~~~~~~~~~  122 (145)
                            .    .++.+.+   .....|+.|..|++.|+++.++.... ..+|..+++.+.+++.+
T Consensus       299 ~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~  363 (400)
T PF03825_consen  299 FIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYD  363 (400)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence                  0    1222221   22346889999999999999998765 45788888888888876

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.80  E-value=0.0089  Score=48.17  Aligned_cols=102  Identities=9%  Similarity=-0.026  Sum_probs=66.8

Q ss_pred             hHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HHH
Q 036778           15 YASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LGY   70 (145)
Q Consensus        15 ~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~~   70 (145)
                      ..|.+.++ +|.  ++....++    .++..++.++|.++.+.+.+|+++++++                       ...
T Consensus       240 LlPl~a~~~l~~--~a~~yGll----~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~  313 (524)
T PF05977_consen  240 LLPLFARDVLGG--GASGYGLL----LAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIA  313 (524)
T ss_pred             hhhHHHHHHhCC--cHHHHHHH----HHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            35667665 677  34444433    3477799999999999999999888776                       111


Q ss_pred             HHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           71 TITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        71 ~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      .+..+.+..   ....+..-+..|.+.|+|.+++..+....+..+++.+.+.+.+
T Consensus       314 l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~  368 (524)
T PF05977_consen  314 LFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD  368 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111111   1222455678999999999999988777777777776666654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=96.75  E-value=0.012  Score=45.00  Aligned_cols=101  Identities=15%  Similarity=0.048  Sum_probs=58.0

Q ss_pred             HHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH---------HHH------------
Q 036778           13 AYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL---------LGY------------   70 (145)
Q Consensus        13 ~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~---------~~~------------   70 (145)
                      ..+.+.+.++ .|.+  .....+.    .+.+.++.+++.++.+++.||.+|+...         ...            
T Consensus       227 ~~~~~~~~~~~~g~~--~~~~~~~----~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (394)
T PRK11652        227 EACSGVLMGAVLGLS--SMTVSIL----FILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVW  300 (394)
T ss_pred             HHhChHHHHHHcCCC--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence            3344556665 6763  4333322    2244566677777777888887743333         000            


Q ss_pred             -----HHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036778           71 -----TITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFM  120 (145)
Q Consensus        71 -----~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~  120 (145)
                           ....+.+.   .+....+..|.+| +.+++..++......++..+++.+...+
T Consensus       301 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~  357 (394)
T PRK11652        301 TLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAML  357 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                 00001111   1334456678887 5789999999888888888888766554

>PRK11462 putative transporter; Provisional

Probab=96.73  E-value=0.01  Score=46.87  Aligned_cols=100  Identities=12%  Similarity=-0.029  Sum_probs=60.4

Q ss_pred             HHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhh----hCChHHH-------------------
Q 036778           12 IAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK----FGRRPLL-------------------   67 (145)
Q Consensus        12 ~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr----~grr~~~-------------------   67 (145)
                      +..|...+..+ +|+  ++.....+..    +.-+.-.+.-++.|+++||    +||||.+                   
T Consensus        28 ~~~~l~~fyt~~~Gl--~~~~~g~i~~----~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p  101 (460)
T PRK11462         28 VMLYMMFFYTDIFGI--PAGFVGTMFL----VARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTP  101 (460)
T ss_pred             HHHHHHHHHHHhhCC--CHHHHHHHHH----HHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCC
Confidence            33455555554 788  4544333332    4445566788889999997    5887766                   


Q ss_pred             ---------------HHHHHHhhccccchhhhhhcccCC-cchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036778           68 ---------------LGYTITFSKGMVRLPNLIMFETFS-INIKGSAGSLVTFLHNNSNSLVAYAFN  118 (145)
Q Consensus        68 ---------------~~~~~~~~~~~~~~~~~~~~e~~p-~~~R~~~~~~~~~~~~~~~~~~~~~~~  118 (145)
                                     .++...+.... ....++.+|+.+ .+.|++..++-...+.+|..+.+.+.+
T Consensus       102 ~~s~~~~~~y~~~~~~~~~~~~t~~~-ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~  167 (460)
T PRK11462        102 DLSMNGKMIYAAITYTLLTLLYTVVN-IPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMM  167 (460)
T ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           00001111111 112367788876 777999999988888887766655543

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=96.73  E-value=0.0097  Score=45.95  Aligned_cols=41  Identities=5%  Similarity=-0.019  Sum_probs=35.0

Q ss_pred             hhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           82 PNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        82 ~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      ...+..|..|++.|++..++.+....++..+++.+.+++.+
T Consensus       318 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~  358 (400)
T PRK11646        318 RETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFD  358 (400)
T ss_pred             HHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHH
Confidence            34677899999999999999999888888888888877765

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=96.69  E-value=0.0067  Score=47.06  Aligned_cols=71  Identities=17%  Similarity=0.078  Sum_probs=47.9

Q ss_pred             hhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HHHHH--HhhccccchhhhhhcccCCcchhh
Q 036778           42 IQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LGYTI--TFSKGMVRLPNLIMFETFSINIKG   96 (145)
Q Consensus        42 ~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~~~~--~~~~~~~~~~~~~~~e~~p~~~R~   96 (145)
                      .-.....+++...+.++|++|||+.+                       ..+..  .++.+..|..-++-.|..|+..|.
T Consensus       121 ~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~  200 (528)
T KOG0253|consen  121 SVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRW  200 (528)
T ss_pred             HHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCC
Confidence            55577888999999999999999998                       22222  233333344445667999999998


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 036778           97 SAGSLVTFLHNNSNSLV  113 (145)
Q Consensus        97 ~~~~~~~~~~~~~~~~~  113 (145)
                      .-+-+. ....+|....
T Consensus       201 ~~~V~~-~~waig~v~e  216 (528)
T KOG0253|consen  201 LLTVMS-FFWAIGQVFE  216 (528)
T ss_pred             cchhHH-HHHHHHHHHH
Confidence            876665 4444444433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=96.61  E-value=0.008  Score=52.30  Aligned_cols=105  Identities=4%  Similarity=-0.126  Sum_probs=67.3

Q ss_pred             HHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH---------HHHHHH-------
Q 036778           11 AIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL---------LGYTIT-------   73 (145)
Q Consensus        11 ~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~---------~~~~~~-------   73 (145)
                      .+..+.|.+.++ +|.  +.....++.+    .+.++.+++.++.+++.||.++++.+         ......       
T Consensus       243 ~~~~~~p~~~~~~~g~--~~~~~g~~~~----~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  316 (1140)
T PRK06814        243 VVLSQLPLLAKETLGG--DENVATLFLA----VFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVP  316 (1140)
T ss_pred             HHHHHhHHHHHHHcCC--chHHHHHHHH----HHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccc
Confidence            334466777765 677  3443443333    66788899999999999887766644         000000       


Q ss_pred             ---------------------------hhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           74 ---------------------------FSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        74 ---------------------------~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                                                 ++.+.+   +...+++.+..|.+.|++.+|+.+++..++..+++.+...+.
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~  394 (1140)
T PRK06814        317 AEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ  394 (1140)
T ss_pred             cccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence                                       011100   123467789999999999999999888887777766655543

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=96.56  E-value=0.03  Score=43.14  Aligned_cols=102  Identities=10%  Similarity=0.002  Sum_probs=61.3

Q ss_pred             HhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----------------------HHH
Q 036778           14 YYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----------------------LGY   70 (145)
Q Consensus        14 ~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------------------~~~   70 (145)
                      +..|.+.++ +|.  ++.+.....    +...++.+++++..+++.||.++|+.+                      ...
T Consensus       226 ~~~~~~~~~~lg~--s~~~~G~~~----~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  299 (393)
T PRK11195        226 FLVLAWAPVALGI--TLNQPAYLQ----AVVAIGIAVGAGAAARLVTLETVLRVLPAGILMGLVVLLMALQHSLLPAYPL  299 (393)
T ss_pred             HHHHHHHHHHcCC--ChhHHHHHH----HHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            344445554 677  444433333    366688899999999999999888755                      000


Q ss_pred             HHHhhcccc---chhhhhhcccCCcch-hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           71 TITFSKGMV---RLPNLIMFETFSINI-KGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        71 ~~~~~~~~~---~~~~~~~~e~~p~~~-R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                      .+..+.+.+   +.......|.-|.+. |+++.++.+....++..++..+...+.
T Consensus       300 ~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~  354 (393)
T PRK11195        300 LILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLV  354 (393)
T ss_pred             HHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            111111111   222345556655554 799999999888888777766655443

>PRK10429 melibiose:sodium symporter; Provisional

Probab=96.56  E-value=0.018  Score=45.48  Aligned_cols=81  Identities=15%  Similarity=0.197  Sum_probs=50.7

Q ss_pred             hhhhhhhhHHHHHHHHHhhhCChHHHH--------HHHH-H-------------------hhcc---ccchhhhhhcccC
Q 036778           42 IQSLFQVPVVGSSVLLADKFGRRPLLL--------GYTI-T-------------------FSKG---MVRLPNLIMFETF   90 (145)
Q Consensus        42 ~~~~~~~~~~~~~~~l~Dr~grr~~~~--------~~~~-~-------------------~~~~---~~~~~~~~~~e~~   90 (145)
                      ...+..+++.++.+++.||+|+|+.+.        .... .                   .+.+   .....+++.+|..
T Consensus       274 ~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~i  353 (473)
T PRK10429        274 YAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTV  353 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            444777888899999999999999870        0000 0                   0000   1133456678884


Q ss_pred             C-----cchh--hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           91 S-----INIK--GSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        91 p-----~~~R--~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      +     +..|  +...++......++..+++.+..++.+
T Consensus       354 d~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        354 DYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             hhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3     4444  445566666777888888887777665

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=96.54  E-value=0.029  Score=43.11  Aligned_cols=45  Identities=9%  Similarity=-0.151  Sum_probs=29.2

Q ss_pred             HHHHhhhCCCCCcchhhhheehhhhhh-hhhhhhHHHHHHHHHhhhCChHHH
Q 036778           17 SSIFDVASNKLSTKFGNFRISILRHIQ-SLFQVPVVGSSVLLADKFGRRPLL   67 (145)
Q Consensus        17 ~~i~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~Dr~grr~~~   67 (145)
                      +.+.++.|.+  +........    .. .++.+++.++++++.||+|||+.+
T Consensus       234 ~~l~~~~G~~--~~~~g~~~~----~~~~~~~i~g~~~~g~l~~r~g~~~~l  279 (402)
T PRK11902        234 TFLIRGAGFS--AGEVGIVNK----TLGLAATIVGALAGGTLMVRLGLYRSL  279 (402)
T ss_pred             HHHHHhcCCC--HHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            4444557774  443333322    11 235778899999999999998876

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.44  E-value=0.0018  Score=50.21  Aligned_cols=86  Identities=14%  Similarity=0.023  Sum_probs=63.9

Q ss_pred             ehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------HHHHHHhhcccc---chhhhhhcccC
Q 036778           37 SILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------LGYTITFSKGMV---RLPNLIMFETF   90 (145)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------~~~~~~~~~~~~---~~~~~~~~e~~   90 (145)
                      +++-+...+.+++..++.|.+.||+|+|-.+                       ++.+...+.+..   ....+++++.|
T Consensus       109 G~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd~f  188 (464)
T KOG3764|consen  109 GLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLADVF  188 (464)
T ss_pred             hHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHc
Confidence            4455589999999999999999999999888                       111122222221   23456888999


Q ss_pred             Ccch-hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           91 SINI-KGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        91 p~~~-R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      |.+. |++++|.......+|-.+++.+...+++
T Consensus       189 ~~d~er~~vmGialgfislG~lvgPpfGGilYe  221 (464)
T KOG3764|consen  189 PEDNERGSVMGIALGFISLGVLVGPPFGGILYE  221 (464)
T ss_pred             ccchhhhHHHHHHHHHHhccceecCCcccchHh
Confidence            9988 7999999998888888777777666665

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=96.38  E-value=0.087  Score=35.74  Aligned_cols=112  Identities=9%  Similarity=-0.002  Sum_probs=66.1

Q ss_pred             hhhhhchHHHHHhHHHHHhhhCCCC----CcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------
Q 036778            3 MQTLGGSTAIAYYASSIFDVASNKL----STKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------   67 (145)
Q Consensus         3 ~~~~~g~~~~~~~~~~i~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------   67 (145)
                      +..+++.++..+...++.+..+.+.    +...-..    ..++.+....+.+++...+++++|.|+.+           
T Consensus         6 ~~~Ftaf~t~~~i~~svi~s~~~~~~~~i~~~~G~~----slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~   81 (156)
T PF05978_consen    6 MFLFTAFQTQSFIQESVIHSVHERNPSSISAGLGYY----SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYI   81 (156)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhcCcccccccccHH----HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4455666666666666666544430    1111111    12244466777888889999999999998           


Q ss_pred             ---------H--HHHHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036778           68 ---------L--GYTITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFN  118 (145)
Q Consensus        68 ---------~--~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~  118 (145)
                               .  ......+.+.+   ...-.|+.+...++.|++..++...+...+.++++...-
T Consensus        82 ~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen   82 ASFFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             HHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence                     0  00011111111   222357778888888999988887777776666555443

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=96.34  E-value=0.036  Score=42.70  Aligned_cols=113  Identities=15%  Similarity=0.123  Sum_probs=76.6

Q ss_pred             hhhhchHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhh-CChHHH---------------
Q 036778            4 QTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKF-GRRPLL---------------   67 (145)
Q Consensus         4 ~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~-grr~~~---------------   67 (145)
                      .|....+.+..+.|.++.+-|.  +......+.+    ...+++.+.++...++++|. ++|+..               
T Consensus       219 lqS~~~Y~~~~WLP~ili~~G~--sa~~aG~lls----l~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~  292 (395)
T COG2807         219 LQSLLYYIVIGWLPAILIDRGL--SAAEAGSLLS----LMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLL  292 (395)
T ss_pred             hhHHHHHHHHHHHHHHHHHcCC--CHHHhhhHHH----HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            3555677778899999999999  5665555555    77799999999999999976 455544               


Q ss_pred             -------HHHHHHhhcccc---chhhhhhcccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 -------LGYTITFSKGMV---RLPNLIMFETF-SINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 -------~~~~~~~~~~~~---~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                             ....+.++.+.+   +...+++..-. .++.-++-.++.+.++.+-+..+|.+++++++
T Consensus       293 ~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhD  358 (395)
T COG2807         293 LAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHD  358 (395)
T ss_pred             HhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHH
Confidence                   122222333322   33334444433 44456667777888888888889999988876

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=96.31  E-value=0.018  Score=45.78  Aligned_cols=78  Identities=15%  Similarity=0.151  Sum_probs=56.7

Q ss_pred             hhhhhHHHHHHHHHhhhCChHHH-------------HHHHH-------Hhhcc---ccchhhhhhcccCCcchhhhHHHH
Q 036778           45 LFQVPVVGSSVLLADKFGRRPLL-------------LGYTI-------TFSKG---MVRLPNLIMFETFSINIKGSAGSL  101 (145)
Q Consensus        45 ~~~~~~~~~~~~l~Dr~grr~~~-------------~~~~~-------~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~  101 (145)
                      +..++.++.-|.++||.|||..+             ..+..       ....+   ......+|++++...+.|...+++
T Consensus        73 ~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gl  152 (463)
T KOG2816|consen   73 LLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGYWFFLLLGLSGGFSAIFSVGFAYVADISSEEERSSSIGL  152 (463)
T ss_pred             HHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhhcccccchhhhhhhhhhheeeccchhHHHHHHHH
Confidence            56777888899999999999998             11111       00111   113456899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 036778          102 VTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      .....+.+..+++.+..+...
T Consensus       153 l~~~~~~~~~~~p~~~~~~~~  173 (463)
T KOG2816|consen  153 LSGTFGAGLVIGPALGGYLVK  173 (463)
T ss_pred             HHHHHHHHHhHHHHHHHHHHH
Confidence            998777777777777666654

>PRK10054 putative transporter; Provisional

Probab=95.94  E-value=0.027  Score=43.40  Aligned_cols=79  Identities=14%  Similarity=0.068  Sum_probs=50.1

Q ss_pred             hhhhhhhHHHHHHHHHhhhCChHHHH-------H----H-------------HHHhhccc---cchhhhhhcccCCcchh
Q 036778           43 QSLFQVPVVGSSVLLADKFGRRPLLL-------G----Y-------------TITFSKGM---VRLPNLIMFETFSINIK   95 (145)
Q Consensus        43 ~~~~~~~~~~~~~~l~Dr~grr~~~~-------~----~-------------~~~~~~~~---~~~~~~~~~e~~p~~~R   95 (145)
                      ..+......+..+.+.||.++|+.+.       .    +             ...++.+.   .|....++.+..|++.|
T Consensus       253 ~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~  332 (395)
T PRK10054        253 NAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMK  332 (395)
T ss_pred             hhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccc
Confidence            33555556677889999999998760       0    0             00001111   12333456688899999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           96 GSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      ++..+... ..++|..+++....++.+
T Consensus       333 ~~~~~~~~-~~~~G~~~Gp~~~G~l~~  358 (395)
T PRK10054        333 ASYFSAQS-LGWLGAAINPLVSGVILT  358 (395)
T ss_pred             eehHhHHH-HHHHHHHHHHHHHHHHHH
Confidence            99888644 566788888888777765

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=95.76  E-value=0.036  Score=43.18  Aligned_cols=59  Identities=14%  Similarity=0.047  Sum_probs=43.6

Q ss_pred             hhhhhhchHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHH
Q 036778            2 LMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPL   66 (145)
Q Consensus         2 ~~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~   66 (145)
                      .|.+....-....|.|.++++.|+  ++.+...+.+    ...+..+++.++.|+++||.++++.
T Consensus        11 ~f~~f~~~G~~~p~~~~~L~~~G~--s~~qIG~l~a----~~~~~~i~~~~~~g~~aDr~~~~~~   69 (400)
T PF03825_consen   11 YFLYFFAYGAFLPYLPLYLESRGF--SGTQIGILLA----VGPLARIVSPPFWGAIADRFGSAKR   69 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHH----HHHHHHHHHHHHHHHHHhHhhhHHH
Confidence            345555556666788999999998  5555554444    7788999999999999999865443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=95.73  E-value=0.074  Score=40.75  Aligned_cols=34  Identities=24%  Similarity=0.193  Sum_probs=25.2

Q ss_pred             hhhhhhHHHHHHHHHhhhCChHHHHHHHHHhhcc
Q 036778           44 SLFQVPVVGSSVLLADKFGRRPLLLGYTITFSKG   77 (145)
Q Consensus        44 ~~~~~~~~~~~~~l~Dr~grr~~~~~~~~~~~~~   77 (145)
                      .+..++...+.|.++||+|||+.-.++...++..
T Consensus        79 f~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~s  112 (354)
T PF05631_consen   79 FASSAIFGTFVGSLADRYGRKKACLLFCILYSLS  112 (354)
T ss_pred             HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            3555666678889999999999876666666554

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=95.60  E-value=0.1  Score=41.62  Aligned_cols=78  Identities=17%  Similarity=0.090  Sum_probs=53.9

Q ss_pred             hhhhhhhhhhhHHHHHHHHHhhhCChHHH--------------------------H-HH---HHHhhccccchhhhhhcc
Q 036778           39 LRHIQSLFQVPVVGSSVLLADKFGRRPLL--------------------------L-GY---TITFSKGMVRLPNLIMFE   88 (145)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------------------------~-~~---~~~~~~~~~~~~~~~~~e   88 (145)
                      .+++..+...+..++.|-++|+.++||.+                          . ++   ...+..+ .....++.+|
T Consensus        75 ~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~-~vfyna~LP~  153 (477)
T PF11700_consen   75 ANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEAS-NVFYNAYLPD  153 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHH-HHHHHHHhHh
Confidence            44577788888999999999999998887                          0 00   0011111 1233478889


Q ss_pred             cCCcchh--------------------------hhHHHHHHHHHHHHHHHHHHHH
Q 036778           89 TFSINIK--------------------------GSAGSLVTFLHNNSNSLVAYAF  117 (145)
Q Consensus        89 ~~p~~~R--------------------------~~~~~~~~~~~~~~~~~~~~~~  117 (145)
                      +.+.+.+                          ++..+.....+.+|+.+.-.+.
T Consensus       154 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~  208 (477)
T PF11700_consen  154 LARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLIS  208 (477)
T ss_pred             hcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHH
Confidence            8888887                          8888888888888876655444

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=95.60  E-value=0.02  Score=46.05  Aligned_cols=110  Identities=18%  Similarity=0.144  Sum_probs=74.6

Q ss_pred             hchHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-------------------
Q 036778            7 GGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-------------------   67 (145)
Q Consensus         7 ~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-------------------   67 (145)
                      .|.+.-..|+|.+.++.+++  ......+.+    +..+...++-++.|+++|+...|+..                   
T Consensus       312 ~g~~~p~~~l~~~~~~~g~~--~~~aa~l~S----iigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~  385 (509)
T KOG2504|consen  312 LGFNVPFVYLPSYAKSLGLS--SNDAAFLLS----IIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFA  385 (509)
T ss_pred             HHHHHHHHHHHHHHhhcCCC--hhhhHHHHH----HHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHh
Confidence            45555566777778888885  433333333    55599999999999999999854444                   


Q ss_pred             ------HHHHHHhhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 ------LGYTITFSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 ------~~~~~~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                            ..+...++...+   ........|+.+.+.-..+.|+...+..++..+++.+..++.+
T Consensus       386 ~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d  449 (509)
T KOG2504|consen  386 TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYD  449 (509)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeee
Confidence                  111222222222   3344577899999999999999998888888888777765544

>PRK09848 glucuronide transporter; Provisional

Probab=95.55  E-value=0.098  Score=40.86  Aligned_cols=48  Identities=10%  Similarity=0.056  Sum_probs=32.2

Q ss_pred             HhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhh----CChHHH
Q 036778           14 YYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKF----GRRPLL   67 (145)
Q Consensus        14 ~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~----grr~~~   67 (145)
                      .|.+.++++ .|.  ++.....+.    ++..+...+..++.|+++||.    ||||.+
T Consensus        29 ~~l~~y~~~~~gl--~~~~~g~~~----~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~   81 (448)
T PRK09848         29 LFLLSYYTDVAGV--GAAAAGTML----LLVRVFDAFADVFAGRVVDSVNTRWGKFRPF   81 (448)
T ss_pred             HHHHHHHHHHcCC--CHHHHHHHH----HHHHHHHHHhhhhheeeeecCCCCCcCchHH
Confidence            344455554 688  454444333    366788888999999999997    666643

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=95.49  E-value=0.12  Score=41.09  Aligned_cols=80  Identities=16%  Similarity=0.147  Sum_probs=51.4

Q ss_pred             hhhhhhhHHHHHHHHHhhhCChHHH-------------------------HHHHHH--hh-ccccchhhhhhcccC----
Q 036778           43 QSLFQVPVVGSSVLLADKFGRRPLL-------------------------LGYTIT--FS-KGMVRLPNLIMFETF----   90 (145)
Q Consensus        43 ~~~~~~~~~~~~~~l~Dr~grr~~~-------------------------~~~~~~--~~-~~~~~~~~~~~~e~~----   90 (145)
                      .....+.+.++...+++|+|+|+++                         ++....  .+ ....+++|+..+|+-    
T Consensus       281 ~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge  360 (467)
T COG2211         281 SGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGE  360 (467)
T ss_pred             HHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHH
Confidence            3355566688889999999999998                         111111  11 122367888888764    


Q ss_pred             -CcchhhhH--HHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           91 -SINIKGSA--GSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        91 -p~~~R~~~--~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                       -+..|..|  .+.......++..++..+.++...
T Consensus       361 ~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~  395 (467)
T COG2211         361 WKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG  395 (467)
T ss_pred             HHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             33444444  445556677888888888777766

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=95.42  E-value=0.11  Score=40.74  Aligned_cols=51  Identities=20%  Similarity=0.111  Sum_probs=35.0

Q ss_pred             HHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH
Q 036778           11 AIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL   67 (145)
Q Consensus        11 ~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~   67 (145)
                      ....|.|.++++ .|+  ++.+..++.+    +..+..++.+++.|.+.||.|.||-+
T Consensus        25 i~~pF~~iWL~~~~GL--s~~~iG~i~s----~~~~~~l~~qp~~G~i~Dklg~kK~L   76 (412)
T PF01306_consen   25 IFLPFFPIWLTQVAGL--SGTEIGIIFS----AGSLFALLAQPVYGFISDKLGLKKHL   76 (412)
T ss_dssp             HHHHHHHHHHHHHH-----HHHHHHHHH----HHHHHHHHTHHHHHHHHHHCTTCSHH
T ss_pred             HHHHHHHHHHccccCC--CHHHHHHHHH----HHHHHHHHHHHhHHHhcchhhhhHHH
Confidence            334466777875 899  5666555555    67788889999999999999955543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00788 fbt folate/biopterin transporter

Probab=95.21  E-value=0.12  Score=41.01  Aligned_cols=80  Identities=15%  Similarity=0.109  Sum_probs=58.2

Q ss_pred             hhhhhhhhHHHHHHHHHhhhCChHHHH----HHHHHh---------------------------------hccccchhhh
Q 036778           42 IQSLFQVPVVGSSVLLADKFGRRPLLL----GYTITF---------------------------------SKGMVRLPNL   84 (145)
Q Consensus        42 ~~~~~~~~~~~~~~~l~Dr~grr~~~~----~~~~~~---------------------------------~~~~~~~~~~   84 (145)
                      ...++.+++....+.+.+|++.|+++.    +.....                                 +....+ ...
T Consensus       296 ~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~-~~~  374 (468)
T TIGR00788       296 VGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMP-FLV  374 (468)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHcc-HHH
Confidence            455888888899999999999999871    111100                                 000001 146


Q ss_pred             hhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           85 IMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        85 ~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      +..+..|++.+++..++...+.+++..+++.+..++.+
T Consensus       375 ~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~  412 (468)
T TIGR00788       375 LLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME  412 (468)
T ss_pred             HHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77899999999999999999999999998877766665

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=95.15  E-value=0.047  Score=43.76  Aligned_cols=54  Identities=17%  Similarity=0.154  Sum_probs=38.6

Q ss_pred             chHHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhh----hCChHHH
Q 036778            8 GSTAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK----FGRRPLL   67 (145)
Q Consensus         8 g~~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr----~grr~~~   67 (145)
                      -.+.+.++.|.++++ .|.  +......+..    .+.++.+++.+++++++||    ..+|..+
T Consensus       288 v~~~~~~~lpl~l~~~~~~--s~~~a~~ls~----~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~  346 (495)
T KOG2533|consen  288 VNYGFSYWLPLYLKSNGGY--SELQANLLST----PYDVGGIVGLILAGYLSDRLKTIFARRLLF  346 (495)
T ss_pred             ccccHHHHHHHHHHcCCCc--ChHHhccccc----hHHhhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            446788899999998 345  3433333322    6669999999999999999    5566555

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=94.97  E-value=0.043  Score=43.34  Aligned_cols=84  Identities=21%  Similarity=0.160  Sum_probs=57.8

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHhhhCChHHH-------------------------HH--HH-HHhhc------cccchhh
Q 036778           38 ILRHIQSLFQVPVVGSSVLLADKFGRRPLL-------------------------LG--YT-ITFSK------GMVRLPN   83 (145)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-------------------------~~--~~-~~~~~------~~~~~~~   83 (145)
                      +++.+|.++.++..+.+.|+.||+|-|...                         +.  .. ...+.      ....++.
T Consensus        83 wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPs  162 (480)
T KOG2563|consen   83 WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPS  162 (480)
T ss_pred             HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhcccc
Confidence            556688899999999999999999998887                         00  00 00000      0011222


Q ss_pred             hhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           84 LIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        84 ~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                      -...-.||.+.|+++..+..+.+-+|.+++..+-|.+.
T Consensus       163 kiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV  200 (480)
T KOG2563|consen  163 KIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILV  200 (480)
T ss_pred             HHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceec
Confidence            23344799999999999999888888877776655554

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=94.65  E-value=0.18  Score=40.13  Aligned_cols=106  Identities=11%  Similarity=0.076  Sum_probs=67.2

Q ss_pred             HHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhh----hCChHHH-----------------
Q 036778           10 TAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK----FGRRPLL-----------------   67 (145)
Q Consensus        10 ~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr----~grr~~~-----------------   67 (145)
                      ..+..|+..+..+ .|+  ++.....+..    +-=+.-.+.-++.|.++||    +||||-+                 
T Consensus        29 ~~~~~yLl~fYTdv~Gi--s~~~aG~ifl----v~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~  102 (467)
T COG2211          29 GIVVLYLLFFYTDVFGL--SAALAGTIFL----VARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFI  102 (467)
T ss_pred             HHHHHHHHHHHhcccCC--cHHHHHHHHH----HHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHc
Confidence            4455667777766 788  4543333322    2224445667888999996    4666665                 


Q ss_pred             -----------------HHHHHHhhccccchhhhhhcccC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 -----------------LGYTITFSKGMVRLPNLIMFETF-SINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 -----------------~~~~~~~~~~~~~~~~~~~~e~~-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                                       .++..+|...-.|. .++.+|+- .++.|.+..+.-.....+++.+.....+++..
T Consensus       103 ~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy-~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~  174 (467)
T COG2211         103 TPDFSMTGKLIYALVTYMLLGLGYTLVNIPY-GALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVK  174 (467)
T ss_pred             CCCcccCcchHHHHHHHHHHHHHHHheeCch-hhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             11222222221222 36777875 55679999999999999999999988877765

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=94.58  E-value=0.29  Score=38.39  Aligned_cols=105  Identities=14%  Similarity=0.101  Sum_probs=63.7

Q ss_pred             HHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHHH------HHH-----------------
Q 036778           16 ASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLLG------YTI-----------------   72 (145)
Q Consensus        16 ~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~~------~~~-----------------   72 (145)
                      .|.+.+..--  +....+-..+.+++...+...+...+..++.+|+|-|+.+.+      .+.                 
T Consensus       243 f~~y~~~~f~--~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~kl  320 (412)
T PF01306_consen  243 FPIYFASFFQ--SAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKL  320 (412)
T ss_dssp             HHHHHHHTSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHH
T ss_pred             HHHHHHHHhc--ccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence            3444544333  233333344555667778999999999999999999998811      110                 


Q ss_pred             Hhhcccc---chhhhhhcccCCcchhhhHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 036778           73 TFSKGMV---RLPNLIMFETFSINIKGSAGSLVT-FLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        73 ~~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~~~  122 (145)
                      .++....   ....-|+++.+|++..++...+.. ....++..+.+...+++.+
T Consensus       321 LH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd  374 (412)
T PF01306_consen  321 LHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYD  374 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHh
Confidence            0110000   112358999999999999888864 4455666666666666654

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=94.08  E-value=0.63  Score=38.77  Aligned_cols=97  Identities=9%  Similarity=0.018  Sum_probs=59.3

Q ss_pred             HHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhh-CChHHHH-----------------------------
Q 036778           19 IFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKF-GRRPLLL-----------------------------   68 (145)
Q Consensus        19 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~-grr~~~~-----------------------------   68 (145)
                      +.+.+|.+  ......+..    .+....-+...++++++|+. ||++.+.                             
T Consensus        14 l~~~lg~~--~~~A~~i~~----~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~   87 (654)
T TIGR00926        14 FLNFLGFS--ESTSTVLFH----TFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL   87 (654)
T ss_pred             HHHHcCCc--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence            34457774  333333323    33344445667888999974 8888870                             


Q ss_pred             --HHHHHhhcccc---chhhhhhcccCCcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           69 --GYTITFSKGMV---RLPNLIMFETFSIN---IKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        69 --~~~~~~~~~~~---~~~~~~~~e~~p~~---~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                        ..+...+.|.+   +..-+...|.++.+   .|.+...+.++..++|+++++.+.+++.
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~  148 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILR  148 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              00001111222   33446777888643   4778888888999999999988888876

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=93.59  E-value=0.48  Score=37.06  Aligned_cols=40  Identities=8%  Similarity=-0.028  Sum_probs=32.5

Q ss_pred             hhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           82 PNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        82 ~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                      ..++.+|..|++.|++..++...+--+|..+.+.+...+.
T Consensus       110 ~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL  149 (403)
T PF03209_consen  110 FLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLL  149 (403)
T ss_pred             HHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3478899999999999999999887777777776665544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=93.55  E-value=0.72  Score=35.79  Aligned_cols=27  Identities=7%  Similarity=0.043  Sum_probs=17.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036778           94 IKGSAGSLVTFLHNNSNSLVAYAFNFM  120 (145)
Q Consensus        94 ~R~~~~~~~~~~~~~~~~~~~~~~~~~  120 (145)
                      .++++.++.......+...++....++
T Consensus       344 ~~G~a~a~~~~~~~~~~~~~~~~~g~~  370 (413)
T PRK15403        344 PKGTVSASLNMVILMVMAVSVEIGRWL  370 (413)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367777777776666666655555544

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=93.35  E-value=0.76  Score=35.66  Aligned_cols=103  Identities=17%  Similarity=0.086  Sum_probs=68.5

Q ss_pred             HHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH--------------------HHHHH
Q 036778           13 AYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL--------------------LGYTI   72 (145)
Q Consensus        13 ~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------------------~~~~~   72 (145)
                      ....+.+-+++|.+  ..    ..+++++.+.++..+.+++..++..|+|.++.+                    .++..
T Consensus        32 gPLL~~Ir~~~gls--~s----~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~g  105 (395)
T COG2807          32 GPLLDEIRQDLGLS--FS----VAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLG  105 (395)
T ss_pred             hhhHHHHHHHhccc--HH----HHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            33455556667773  33    334556689999999999999999999988887                    11111


Q ss_pred             H--hhcccc---chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           73 T--FSKGMV---RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        73 ~--~~~~~~---~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      .  .+.+.+   ...+..+-|-||.+. +..++++.+.-.+++.+++...+.+.+
T Consensus       106 t~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~  159 (395)
T COG2807         106 TLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQ  159 (395)
T ss_pred             HHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHH
Confidence            1  111111   233467778888654 566777777777888888888877765

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=93.16  E-value=0.6  Score=32.91  Aligned_cols=75  Identities=21%  Similarity=0.131  Sum_probs=46.6

Q ss_pred             hhhhhhhhHHHHHHHHHhhhCChHHHH--H-----------------------HHHHhhccc---cchhhhhhcccCCc-
Q 036778           42 IQSLFQVPVVGSSVLLADKFGRRPLLL--G-----------------------YTITFSKGM---VRLPNLIMFETFSI-   92 (145)
Q Consensus        42 ~~~~~~~~~~~~~~~l~Dr~grr~~~~--~-----------------------~~~~~~~~~---~~~~~~~~~e~~p~-   92 (145)
                      .+.+...++.+..|.+.||.|||+.+.  .                       .....+.+.   .+....+.+|.+|. 
T Consensus        47 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  126 (338)
T COG0477          47 AFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEA  126 (338)
T ss_pred             HHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCch
Confidence            556777777799999999999997660  0                       000011111   14455788899887 


Q ss_pred             chhhhHHHHHHH-HHHHHHHHHHHH
Q 036778           93 NIKGSAGSLVTF-LHNNSNSLVAYA  116 (145)
Q Consensus        93 ~~R~~~~~~~~~-~~~~~~~~~~~~  116 (145)
                      +.|+...+.... ....+..+++.+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~  151 (338)
T COG0477         127 TERGLAVGLVTLGAGALGLALGPLL  151 (338)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567777777666 344555555433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=91.20  E-value=0.44  Score=37.30  Aligned_cols=103  Identities=9%  Similarity=0.008  Sum_probs=61.8

Q ss_pred             HHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------------------
Q 036778           12 IAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------------------   67 (145)
Q Consensus        12 ~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------------------   67 (145)
                      +..+.+.++.+ .|.  +........    +.+|++.++|-+++.++..|+...|.+                       
T Consensus       255 ~gsfl~~y~~~~~g~--~~~~aa~~~----s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~~  328 (422)
T COG0738         255 IGSFLVSYLEELLGL--NEQQAAYYL----SFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGVVAL  328 (422)
T ss_pred             HHHHHHHHHHhcCCc--cHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHHH
Confidence            34456677766 555  344443333    388899999999999999999988887                       


Q ss_pred             --HHHHHHhhccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 --LGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 --~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                        ......+.....|..+....+.+|.+ -. ..|....+..+|+.+.|.+.+++.+
T Consensus       329 ~~l~~ig~F~simfPTIfslal~~l~~~-ts-~~s~~l~maivGGAiiP~l~G~i~d  383 (422)
T COG0738         329 YALFLIGLFNSIMFPTIFSLALKNLGEH-TS-VGSGLLVMAIVGGAIIPPLQGVIAD  383 (422)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhccCcc-cc-ccceeeeeheecchHHHHHHHHHHH
Confidence              11111112222355566677777732 22 2233333456677777777666654

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=91.06  E-value=0.93  Score=27.53  Aligned_cols=51  Identities=16%  Similarity=-0.076  Sum_probs=37.7

Q ss_pred             HHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH
Q 036778           11 AIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL   67 (145)
Q Consensus        11 ~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~   67 (145)
                      ..+...|.+.++.+.  +.....++.+    ..+++.++|.+....+.++.++|+.+
T Consensus        10 ayTplLP~M~~~~~l--s~~~ag~las----aNy~GYL~GAl~~~~~~~~~~~~~~~   60 (85)
T PF06779_consen   10 AYTPLLPLMQADGGL--SLSQAGWLAS----ANYLGYLVGALLASRLPRHSRPRRLL   60 (85)
T ss_pred             HHHhHhHHHHHhcCC--CHHHHHHHHH----HHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            344467888888888  4555555444    77899999999999988887666665

Note that many members are hypothetical proteins.

>TIGR00788 fbt folate/biopterin transporter

Probab=90.76  E-value=0.96  Score=35.91  Aligned_cols=38  Identities=5%  Similarity=-0.049  Sum_probs=19.9

Q ss_pred             hhhcccCCcchhhhHH---HHHHHHHHHHHHHHHHHHHHHhh
Q 036778           84 LIMFETFSINIKGSAG---SLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        84 ~~~~e~~p~~~R~~~~---~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      .+..|..+ +.+..+.   +.......+|..+++.+..++.+
T Consensus       143 a~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~  183 (468)
T TIGR00788       143 SLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD  183 (468)
T ss_pred             HHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            57778887 4444332   23332233566666666555544

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=89.55  E-value=1.6  Score=34.96  Aligned_cols=41  Identities=10%  Similarity=-0.070  Sum_probs=36.6

Q ss_pred             hhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           81 LPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        81 ~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                      +.|.+..|++..+.-.|-+++....+++|..+++.+..++.
T Consensus       149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56889999999999999999999999999999888877665

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=88.66  E-value=0.85  Score=36.42  Aligned_cols=39  Identities=15%  Similarity=0.227  Sum_probs=26.5

Q ss_pred             hhhcccCCcchhhhHHHHHHHHHHH-HHHHHHHHHHHHhh
Q 036778           84 LIMFETFSINIKGSAGSLVTFLHNN-SNSLVAYAFNFMIE  122 (145)
Q Consensus        84 ~~~~e~~p~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~  122 (145)
                      -+..|+.|++.|.+++++...+..+ |.+..|++...+.+
T Consensus       372 ~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd  411 (493)
T KOG1330|consen  372 PIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSD  411 (493)
T ss_pred             ceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHH
Confidence            3567889999999999998765544 34444445555543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=88.46  E-value=0.41  Score=38.94  Aligned_cols=52  Identities=13%  Similarity=0.071  Sum_probs=38.7

Q ss_pred             HHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH
Q 036778           10 TAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL   67 (145)
Q Consensus        10 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~   67 (145)
                      ..+....+++.+++|+  ++.+...+.+    .-=++.+++.+++|.++||+.+||.+
T Consensus        28 g~l~pll~vy~kQLGl--~p~~~Gtl~g----~~P~v~~L~~P~~g~~Adr~r~~r~l   79 (618)
T KOG3762|consen   28 GSLFPLLAVYFKQLGL--NPAVVGTLTG----TLPLVEFLAAPLWGFLADRYRKRRPL   79 (618)
T ss_pred             cccchHHHHHHHHcCC--CHHHhhhhhh----HHHHHHHHhHHHHHHHHHHHHhcCch
Confidence            3445577889999999  4555554444    44477888999999999999876665

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=88.33  E-value=1.5  Score=35.23  Aligned_cols=83  Identities=13%  Similarity=-0.019  Sum_probs=56.2

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHhhhC--ChHHH---------------------------HHHHHHhhcccc--chhhhhh
Q 036778           38 ILRHIQSLFQVPVVGSSVLLADKFG--RRPLL---------------------------LGYTITFSKGMV--RLPNLIM   86 (145)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~l~Dr~g--rr~~~---------------------------~~~~~~~~~~~~--~~~~~~~   86 (145)
                      ++.+...++..+.++..++...|.+  ||+++                           +..+++.+.+.+  ...-.|+
T Consensus        75 ~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~  154 (488)
T KOG2325|consen   75 LVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYI  154 (488)
T ss_pred             HHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHH
Confidence            3344677889999999999999988  77776                           233334444433  3345688


Q ss_pred             cccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036778           87 FETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFM  120 (145)
Q Consensus        87 ~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~  120 (145)
                      +.-.-.+.|.++++......-++.+++|.+-+.+
T Consensus       155 a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f  188 (488)
T KOG2325|consen  155 ADASTVEDRPRAFAATSGGFVLGIILGPTIQLAF  188 (488)
T ss_pred             HhccCccchHHHHHHhhhHHHHHHHHhHHHHHHH
Confidence            8877788888888887765556666665554444

>TIGR00805 oat sodium-independent organic anion transporter

Probab=86.15  E-value=0.71  Score=38.23  Aligned_cols=53  Identities=13%  Similarity=0.002  Sum_probs=35.9

Q ss_pred             hhchHHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhh-hhhhHHHHHHHHHhhhCCh
Q 036778            6 LGGSTAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSL-FQVPVVGSSVLLADKFGRR   64 (145)
Q Consensus         6 ~~g~~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~Dr~grr   64 (145)
                      ..+......|.|.++++ +|.  ++.....+.+    ...+ +.+++.+++|+++||++++
T Consensus       343 ~~~~~~~~~~lP~yl~~~~g~--s~~~ag~l~~----~~~i~~~~vG~~l~G~l~~r~~~~  397 (633)
T TIGR00805       343 SLAFNGYITFLPKYLENQYGI--SSAEANFLIG----VVNLPAAGLGYLIGGFIMKKFKLN  397 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHcCC--cHHHHHHHhh----hhhhhHHHHHHhhhhheeeeeccc
Confidence            34556677788999875 787  4554444333    2223 4578899999999999844

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=85.68  E-value=3.1  Score=33.38  Aligned_cols=38  Identities=8%  Similarity=0.010  Sum_probs=27.9

Q ss_pred             chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 036778           80 RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAF  117 (145)
Q Consensus        80 ~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~  117 (145)
                      |....++.+..|++.|++.+|+......+++.++..+.
T Consensus       401 p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~  438 (500)
T PRK09584        401 GLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA  438 (500)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456778889999999999988765556666655554

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=85.09  E-value=6.3  Score=31.66  Aligned_cols=40  Identities=10%  Similarity=-0.063  Sum_probs=26.0

Q ss_pred             chhhhhhcccCCcchh--hhHHHHHHHHHHHHHHHHHHHHHH
Q 036778           80 RLPNLIMFETFSINIK--GSAGSLVTFLHNNSNSLVAYAFNF  119 (145)
Q Consensus        80 ~~~~~~~~e~~p~~~R--~~~~~~~~~~~~~~~~~~~~~~~~  119 (145)
                      .+|++++++..|.+.|  |..+|+-+.+--+...+.+...+.
T Consensus       399 siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~  440 (477)
T TIGR01301       399 SIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP  440 (477)
T ss_pred             HHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence            5677888888885444  677777766666666665554444

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=84.73  E-value=5.3  Score=31.98  Aligned_cols=37  Identities=11%  Similarity=0.086  Sum_probs=29.5

Q ss_pred             hhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036778           84 LIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFM  120 (145)
Q Consensus        84 ~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~  120 (145)
                      .++.+..|++.++.++|+......+|+.++..+....
T Consensus       402 ~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        402 AMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556788999999999999988888888877765433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=84.48  E-value=14  Score=30.74  Aligned_cols=80  Identities=13%  Similarity=-0.010  Sum_probs=51.9

Q ss_pred             hhhhhhhhHHHHHHHHHhhhCChHHH--------------------------HHHHHHhhcccc---chhhhhhcccCCc
Q 036778           42 IQSLFQVPVVGSSVLLADKFGRRPLL--------------------------LGYTITFSKGMV---RLPNLIMFETFSI   92 (145)
Q Consensus        42 ~~~~~~~~~~~~~~~l~Dr~grr~~~--------------------------~~~~~~~~~~~~---~~~~~~~~e~~p~   92 (145)
                      ...++..++.++.+.+..+++|-|..                          ..+....+.+.+   ........-..|.
T Consensus       357 ~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~  436 (599)
T PF06609_consen  357 PVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPD  436 (599)
T ss_pred             hHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCc
Confidence            44577788888889999998877766                          111111111111   1122333345688


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           93 NIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        93 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                      +.-+++.++...+..+|+.++.-++.-+.
T Consensus       437 ~~ig~a~gL~~s~R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  437 EDIGTATGLTGSIRSIGGSIGYAIYNAIF  465 (599)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            88999999999999998888877765444

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=80.12  E-value=3.9  Score=32.83  Aligned_cols=49  Identities=16%  Similarity=0.155  Sum_probs=34.2

Q ss_pred             HHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhh----hCChHHH
Q 036778           13 AYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK----FGRRPLL   67 (145)
Q Consensus        13 ~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr----~grr~~~   67 (145)
                      ..|.|-+++.+|.+  .++.+++..    +-=+..++.+++.|..+||    +||||-+
T Consensus        52 lsy~tPyl~~lGvp--hk~~S~iw~----~gPi~G~~vQP~vG~~SDrc~sr~GRRRPf  104 (498)
T KOG0637|consen   52 LSYLTPYLQSLGVP--HKWSSIIWL----CGPLSGLLVQPLVGSASDRCTSRYGRRRPF  104 (498)
T ss_pred             hccccHHHHHcCCC--ccccccccc----ccccccceecccccccccccccccccccch
Confidence            34677788889994  555544433    2235567788889999995    7999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.87
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.01
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.93
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.91
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.85
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.68
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.65
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.52
2xut_A	524	Proton/peptide symporter family protein; transport	98.51
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.31
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.29
2cfq_A	417	Lactose permease; transport, transport mechanism,	97.8
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.41
2xut_A	524	Proton/peptide symporter family protein; transport	95.92

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.87  E-value=5e-22  Score=153.18  Aligned_cols=137  Identities=26%  Similarity=0.428  Sum_probs=107.9

Q ss_pred             hhhhhhchHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH--------------
Q 036778            2 LMQTLGGSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL--------------   67 (145)
Q Consensus         2 ~~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------------   67 (145)
                      +++|.++.+.+.+|.|.+.+..+.+  .......    +.+..+..+++.+++++++||+|||+.+              
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l  359 (491)
T 4gc0_A          286 IFQQFVGINVVLYYAPEVFKTLGAS--TDIALLQ----TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSL  359 (491)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSSCC--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHhcchHHHHhcCCC--ccchhhH----HHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHH
Confidence            5788999999999999999988874  3211111    1134488889999999999999999987              


Q ss_pred             -----------------HHHHHHhhccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh--c-----
Q 036778           68 -----------------LGYTITFSKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE--W-----  123 (145)
Q Consensus        68 -----------------~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----  123 (145)
                                       ..+...++.+.+++++.+.+|++|++.|+++++++...+++++++.+.++|.+..  +     
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~  439 (491)
T 4gc0_A          360 GTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHF  439 (491)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHH
T ss_pred             HHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                             2233445667778889999999999999999999999999999999988887643  1     


Q ss_pred             cC----------------------CCCCCCCHHHHHHHHhhcc
Q 036778          124 ST----------------------IETKGRTLEEIQRSIIKFS  144 (145)
Q Consensus       124 ~~----------------------pet~~~~l~~i~~~~~~~~  144 (145)
                      ..                      ||||+|++||+|++|++++
T Consensus       440 ~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~  482 (491)
T 4gc0_A          440 HNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPET  482 (491)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred             hhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence            00                      9999999999999997664

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.01  E-value=3.4e-09  Score=81.36  Aligned_cols=86  Identities=20%  Similarity=0.101  Sum_probs=62.5

Q ss_pred             hhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHHHH-----------------------------------------HH
Q 036778           33 NFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLLLG-----------------------------------------YT   71 (145)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~~~-----------------------------------------~~   71 (145)
                      ....+++++.+.++.++|++++|+++||+|||+.+..                                         .+
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R  133 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR  133 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence            3444566778999999999999999999999998810                                         01


Q ss_pred             HHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 036778           72 ITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFN  118 (145)
Q Consensus        72 ~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~  118 (145)
                      +..+.+.   .+....|++|..|++.|++..++.......+...+.....
T Consensus       134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~  183 (491)
T 4gc0_A          134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNY  183 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcch
Confidence            1112111   2456689999999999999999988777666665554443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.93  E-value=3.6e-09  Score=79.95  Aligned_cols=106  Identities=7%  Similarity=-0.114  Sum_probs=79.2

Q ss_pred             HHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH----------------------
Q 036778           10 TAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL----------------------   67 (145)
Q Consensus        10 ~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~----------------------   67 (145)
                      .......|.+.+++|.+  ..+..++.    +.+.++..++.++.|+++||+|||+.+                      
T Consensus        43 ~~~~~~~~~~~~~~g~s--~~~~g~~~----~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~  116 (438)
T 3o7q_A           43 NLNDILLPQFQQAFTLT--NFQAGLIQ----SAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMN  116 (438)
T ss_dssp             HHHHHHHHHHHHHSCCC--SHHHHHHH----HHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HhHHHHHHHHHHHcCCC--HHHHHHHH----HHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccccc
Confidence            44555678888889984  54444443    478899999999999999999999998                      


Q ss_pred             ----HHHHHHhhccc---cchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           68 ----LGYTITFSKGM---VRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        68 ----~~~~~~~~~~~---~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                          ....+..+.+.   .+....+++|.+|++.|++.+++......+|..+++.+..++.
T Consensus       117 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  177 (438)
T 3o7q_A          117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                01111111111   1445678999999999999999999999999999888877665

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.91  E-value=6.8e-10  Score=82.61  Aligned_cols=109  Identities=12%  Similarity=-0.025  Sum_probs=78.8

Q ss_pred             chHHHHHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH--------------------
Q 036778            8 GSTAIAYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL--------------------   67 (145)
Q Consensus         8 g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~--------------------   67 (145)
                      +........|.+.+++|.+  ..+..++.    +.+.+...++.++.|+++||+|||+.+                    
T Consensus        15 ~~~~~~~~~~~~~~~~g~s--~~~~g~~~----~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   88 (375)
T 2gfp_A           15 AQTIYIPAIADMARDLNVR--EGAVQSVM----GAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSL   88 (375)
T ss_dssp             HHHHHHHHHHHHHTTSSST--THHHHHHH----HHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHcCCC--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccH
Confidence            3344445567777778884  44444333    478899999999999999999999987                    


Q ss_pred             ---HHHHHHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 ---LGYTITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 ---~~~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                         ....+..+.+   ..+....+.+|.+|++.|++..++......++..+++.+.+++.+
T Consensus        89 ~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~  149 (375)
T 2gfp_A           89 TVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT  149 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence               1111111221   224556788999999999999999999999999888888776654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.85  E-value=2.5e-08  Score=76.62  Aligned_cols=107  Identities=12%  Similarity=0.036  Sum_probs=73.8

Q ss_pred             HHHHHhHHHHHhh------hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhh-hCChHHH---------------
Q 036778           10 TAIAYYASSIFDV------ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADK-FGRRPLL---------------   67 (145)
Q Consensus        10 ~~~~~~~~~i~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr-~grr~~~---------------   67 (145)
                      +....+.+.++++      +|.  +.....++.    +.+.++..++.++.|+++|| +|||+++               
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~--s~~~~~~~~----~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~  103 (491)
T 4aps_A           30 YGMRAILLYYMWFLISTGDLHI--TRATAASIM----AIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA  103 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCCS--CHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchhhcCC--CHHHHHHHH----HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence            3443444555543      677  444444443    47889999999999999999 8999998               


Q ss_pred             --------HHHHHHhhcc---ccchhhhhhcccCCcch--hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 --------LGYTITFSKG---MVRLPNLIMFETFSINI--KGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 --------~~~~~~~~~~---~~~~~~~~~~e~~p~~~--R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                              ....+..+.+   ..+....+++|.+|.+.  |+++.++.+....+|..+++.+..++.+
T Consensus       104 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~  171 (491)
T 4aps_A          104 LPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQE  171 (491)
T ss_dssp             SCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHh
Confidence                    1112222222   12455688999999988  6667777778888888888888777654

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.68  E-value=4.5e-08  Score=74.04  Aligned_cols=102  Identities=15%  Similarity=-0.050  Sum_probs=73.4

Q ss_pred             HHhHHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-----------HHHHH---------
Q 036778           13 AYYASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-----------LGYTI---------   72 (145)
Q Consensus        13 ~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-----------~~~~~---------   72 (145)
                      ..+.|.+.+++ .  +.....++.    +++.++..++.++.|+++||+|||+++           .....         
T Consensus        48 ~~~~~~~~~~~-~--s~~~~g~~~----~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~  120 (451)
T 1pw4_A           48 ALAMPYLVEQG-F--SRGDLGFAL----SGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIA  120 (451)
T ss_dssp             HHHHHHTTSST-T--CSSCHHHHH----HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSS
T ss_pred             HHHHHHHHHHh-c--cHhHHHHHH----HHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHH
Confidence            34556666667 5  444444443    478899999999999999999999998           00000         


Q ss_pred             -------Hhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036778           73 -------TFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        73 -------~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (145)
                             ..+.+   ..+....+++|.+|.+.|++.+++......+|..+++.+..++.
T Consensus       121 ~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  179 (451)
T 1pw4_A          121 VMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM  179 (451)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   00111   12445678999999999999999999999999888888877654

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.65  E-value=1.4e-07  Score=71.32  Aligned_cols=110  Identities=12%  Similarity=0.073  Sum_probs=78.9

Q ss_pred             hchHHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhh--CChHHH----------------
Q 036778            7 GGSTAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKF--GRRPLL----------------   67 (145)
Q Consensus         7 ~g~~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~--grr~~~----------------   67 (145)
                      .+......+.|.++++ .|.  +........    +...++.+++.++.+++.||+  |||+.+                
T Consensus       266 ~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~----~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (451)
T 1pw4_A          266 LLRYGILDWSPTYLKEVKHF--ALDKSSWAY----FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW  339 (451)
T ss_dssp             HHHHHHHHHHHHHBTTBSCC--CHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhcCC--CHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence            3445566778888877 677  444333333    366788999999999999999  999887                


Q ss_pred             ----------HHHHHHhhcc---ccchhhhhhcccCCcchhhhHHHHHHHHHHH-HHHHHHHHHHHHhh
Q 036778           68 ----------LGYTITFSKG---MVRLPNLIMFETFSINIKGSAGSLVTFLHNN-SNSLVAYAFNFMIE  122 (145)
Q Consensus        68 ----------~~~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~  122 (145)
                                .......+.+   ..+....+..|.+|++.|+++.++......+ +..+++.+.+++.+
T Consensus       340 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~  408 (451)
T 1pw4_A          340 MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD  408 (451)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      0000011111   1133346889999999999999999999999 99999999888766

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.52  E-value=5.4e-07  Score=67.93  Aligned_cols=106  Identities=10%  Similarity=0.027  Sum_probs=73.9

Q ss_pred             hHHHHHhHHHH-Hhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH-------------------
Q 036778            9 STAIAYYASSI-FDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL-------------------   67 (145)
Q Consensus         9 ~~~~~~~~~~i-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~-------------------   67 (145)
                      ......+.|.+ .++ +|.  +.........    ...++..++.++.++++||+|||+.+                   
T Consensus       274 ~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~----~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (438)
T 3o7q_A          274 QTACWSYLIRYAVEEIPGM--TAGFAANYLT----GTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG  347 (438)
T ss_dssp             HHHHHHHHHHHHHHHSTTC--CHHHHHHHHH----HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHhhhccCCc--chhHHHHHHH----HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC
Confidence            34455677888 776 487  4443333333    66788999999999999999999988                   


Q ss_pred             ---HHHHHHh---hccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           68 ---LGYTITF---SKGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        68 ---~~~~~~~---~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                         .......   .....+..+.+..|.+|++ |+++.++.. .+.+++.+++.+.+++.+
T Consensus       348 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~  406 (438)
T 3o7q_A          348 HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSD  406 (438)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHH
Confidence               0001111   1122355677888999977 888888877 677888888888887765

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.51  E-value=4.2e-07  Score=70.35  Aligned_cols=106  Identities=11%  Similarity=0.038  Sum_probs=70.1

Q ss_pred             HHHHHhHHHHHh-hhC------CCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhh-CChHHH--------------
Q 036778           10 TAIAYYASSIFD-VAS------NKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKF-GRRPLL--------------   67 (145)
Q Consensus        10 ~~~~~~~~~i~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~-grr~~~--------------   67 (145)
                      +....+.+.++. ++|      .  +.....++.+    .+.++..++.++.|+++||+ |||+++              
T Consensus        29 ~~~~~~l~~~l~~~~~~~~~~~~--s~~~~g~~~~----~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~  102 (524)
T 2xut_A           29 YGMRNILTPFLMTALLLSIPEEL--RGAVAKDVFH----SFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFL  102 (524)
T ss_dssp             HHHHHHHHHHHHHSCSSCCSSST--TTTTHHHHHH----HHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccccccc--CHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            334445555554 477      6  4444444433    77789999999999999999 999987              


Q ss_pred             ----------HHHHHHhhcc---ccchhhhhhcccCCcchhhhHHHH---HHHHHHHHHHHHHHHHHHHh
Q 036778           68 ----------LGYTITFSKG---MVRLPNLIMFETFSINIKGSAGSL---VTFLHNNSNSLVAYAFNFMI  121 (145)
Q Consensus        68 ----------~~~~~~~~~~---~~~~~~~~~~e~~p~~~R~~~~~~---~~~~~~~~~~~~~~~~~~~~  121 (145)
                                ....+..+.+   ..+....+++|.+|++.|++..+.   ......+|..+++.+..++.
T Consensus       103 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~  172 (524)
T 2xut_A          103 AIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLL  172 (524)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHH
T ss_pred             HHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                      0011111111   124456789999999999876665   77777787777776665554

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.31  E-value=1.9e-06  Score=66.07  Aligned_cols=81  Identities=7%  Similarity=-0.082  Sum_probs=59.6

Q ss_pred             hhhhhhhhHHHHHHHHHhhhCChHHH------------------H-H------------------HHHHhh---ccccch
Q 036778           42 IQSLFQVPVVGSSVLLADKFGRRPLL------------------L-G------------------YTITFS---KGMVRL   81 (145)
Q Consensus        42 ~~~~~~~~~~~~~~~l~Dr~grr~~~------------------~-~------------------~~~~~~---~~~~~~   81 (145)
                      ...+..+++.++.+++.||+|||+..                  . .                  .....+   ....+.
T Consensus       327 ~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~  406 (491)
T 4aps_A          327 LNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPV  406 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTH
T ss_pred             cchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHH
Confidence            45577888889999999999998543                  0 0                  000111   111355


Q ss_pred             hhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           82 PNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        82 ~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      .+.+..|.+|++.|+++.++.+....++..+++.+.+++.+
T Consensus       407 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~  447 (491)
T 4aps_A          407 GLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA  447 (491)
T ss_dssp             HHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            67899999999999999999999999999999998877765

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.29  E-value=1.1e-06  Score=66.46  Aligned_cols=82  Identities=12%  Similarity=0.122  Sum_probs=58.0

Q ss_pred             hhhhhhhhhHHHHHHHHHhhhCChHHHH----HH---HHH----------------hhcc---ccchhhhhhcccCCcch
Q 036778           41 HIQSLFQVPVVGSSVLLADKFGRRPLLL----GY---TIT----------------FSKG---MVRLPNLIMFETFSINI   94 (145)
Q Consensus        41 ~~~~~~~~~~~~~~~~l~Dr~grr~~~~----~~---~~~----------------~~~~---~~~~~~~~~~e~~p~~~   94 (145)
                      +...++..++.+..+++.||+|||+++.    ..   ...                ++.+   ..+..+.+.+|.+|++.
T Consensus       266 ~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~  345 (417)
T 2cfq_A          266 TMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF  345 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            3555778889999999999999999870    00   000                0000   01233578999999999


Q ss_pred             hhhHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 036778           95 KGSAGSLV-TFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        95 R~~~~~~~-~~~~~~~~~~~~~~~~~~~~  122 (145)
                      |+++.++. +...++++.+++.+.+++.+
T Consensus       346 ~g~~~g~~~~~~~~lg~~~gp~l~G~l~~  374 (417)
T 2cfq_A          346 SATIYLVCFCFFKQLAMIFMSVLAGNMYE  374 (417)
T ss_dssp             HHHHHHHHHTTTHHHHHHHHTHHHHTHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHhhhhHHHHHH
Confidence            99999985 66777888888887776654

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=97.80  E-value=9.2e-06  Score=61.45  Aligned_cols=51  Identities=22%  Similarity=0.083  Sum_probs=37.8

Q ss_pred             HHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH
Q 036778           11 AIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL   67 (145)
Q Consensus        11 ~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~   67 (145)
                      ....+.|.++++ +|.+  ..+...+    .+.+.++..+++++.|+++||+|||+.+
T Consensus        25 ~~~~~~~~~l~~~~g~s--~~~~g~~----~~~~~~~~~i~~~~~G~lsDr~Grr~~l   76 (417)
T 2cfq_A           25 AYFPFFPIWLHDINHIS--KSDTGII----FAAISLFSLLFQPLFGLLSDKLGLRKYL   76 (417)
T ss_dssp             HHTTTHHHHHHTTTCCC--TTTSHHH----HHHHHHHHHHHHHHHHHHHTTSTTCCHH
T ss_pred             HHHHHHHHHHHHHhCCC--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            334567777665 7884  4433333    3377799999999999999999999988

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.41  E-value=8.5e-06  Score=60.31  Aligned_cols=104  Identities=16%  Similarity=0.058  Sum_probs=64.4

Q ss_pred             HHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH---------------------
Q 036778           10 TAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL---------------------   67 (145)
Q Consensus        10 ~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~---------------------   67 (145)
                      .....+.|.+.++ .|.  ++.....    +.+...++..++.++.+++.||.+||...                     
T Consensus       216 ~~~~~~~~~~~~~~~g~--~~~~~g~----~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (375)
T 2gfp_A          216 AAFEACSGVLMGAVLGL--SSMTVSI----LFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVM  289 (375)
T ss_dssp             HHHHHHCSCSSHHHHHH--HHHHHHH----HHHTHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTSSSSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCC--CHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            3344444555554 565  3333332    23366688888889999999999874443                     


Q ss_pred             -----HHHHHHhh---ccccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036778           68 -----LGYTITFS---KGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFM  120 (145)
Q Consensus        68 -----~~~~~~~~---~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~  120 (145)
                           .......+   ....+....+..|..| +.|+++.++.+....++..+++.+.+.+
T Consensus       290 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l  349 (375)
T 2gfp_A          290 NVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAML  349 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHH
T ss_pred             cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 00000111   1123555678889998 8999999999988888877766554443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=95.92  E-value=0.0024  Score=49.14  Aligned_cols=43  Identities=16%  Similarity=-0.002  Sum_probs=35.8

Q ss_pred             chhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           80 RLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        80 ~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      +..+.+..|..|++.|++++|+.+....+++.+++.+.+.+.+
T Consensus       424 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~  466 (524)
T 2xut_A          424 ATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS  466 (524)
T ss_dssp             HHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3345678899999999999999999999999998888776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.93
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.76
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.4

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=1.8e-09  Score=79.53  Aligned_cols=100  Identities=14%  Similarity=-0.060  Sum_probs=70.4

Q ss_pred             HHHHHhhhCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH---------------------------H
Q 036778           16 ASSIFDVASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL---------------------------L   68 (145)
Q Consensus        16 ~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~---------------------------~   68 (145)
                      .|.+ ++.|.  +..+..++.+    .+.++..++.++.|+++||+|||+++                           .
T Consensus        48 ~p~~-~~~g~--s~~~~g~~~s----~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (447)
T d1pw4a_          48 MPYL-VEQGF--SRGDLGFALS----GISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMF  120 (447)
T ss_dssp             HHHT-TSSTT--CSSCHHHHHH----HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHH
T ss_pred             HHHH-HHhCc--CHHHHHHHHH----HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHH
Confidence            3433 45677  4444444444    78899999999999999999999987                           0


Q ss_pred             HHHHHhhc---cccchhhhhhcccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036778           69 GYTITFSK---GMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        69 ~~~~~~~~---~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (145)
                      ...+..+.   ...+....+++|.+|.+.|++.+++......+|..+++........
T Consensus       121 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  177 (447)
T d1pw4a_         121 VLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  177 (447)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence            11111111   1124455789999999999999999998888888887776665543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=1.2e-08  Score=73.37  Aligned_cols=43  Identities=9%  Similarity=0.006  Sum_probs=34.4

Q ss_pred             chhhhhhcccCCcchhhhHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 036778           80 RLPNLIMFETFSINIKGSAGSLVT-FLHNNSNSLVAYAFNFMIE  122 (145)
Q Consensus        80 ~~~~~~~~e~~p~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~~~  122 (145)
                      +....+..|.+|++.|++..++.. ....++..+++.+.+++.+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~  374 (417)
T d1pv7a_         331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE  374 (417)
T ss_dssp             HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455678899999999999999865 4456788888888877765

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=6.5e-07  Score=65.39  Aligned_cols=107  Identities=12%  Similarity=0.088  Sum_probs=70.2

Q ss_pred             HHHHHhHHHHHhh-hCCCCCcchhhhheehhhhhhhhhhhhHHHHHHHHHhhhCChHHH---------------------
Q 036778           10 TAIAYYASSIFDV-ASNKLSTKFGNFRISILRHIQSLFQVPVVGSSVLLADKFGRRPLL---------------------   67 (145)
Q Consensus        10 ~~~~~~~~~i~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dr~grr~~~---------------------   67 (145)
                      +....+.|.++++ .+.  +........    +...+..+++.++.+++.||++||+..                     
T Consensus       266 ~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (447)
T d1pw4a_         266 YGILDWSPTYLKEVKHF--ALDKSSWAY----FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP  339 (447)
T ss_dssp             HHHHHHHHHHBTTBSCC--CHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             hcchhhhhhhccccccc--ccchhhhhh----hcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcc
Confidence            4445556666655 455  333333322    256688899999999999999987543                     


Q ss_pred             -------HHHHHHhh---ccccchhhhhhcccCCcchhhhHHHHHHHHHHHHH-HHHHHHHHHHhh
Q 036778           68 -------LGYTITFS---KGMVRLPNLIMFETFSINIKGSAGSLVTFLHNNSN-SLVAYAFNFMIE  122 (145)
Q Consensus        68 -------~~~~~~~~---~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~  122 (145)
                             ....+..+   .+..+..+.+..|.+|++.|+++.|+.+..+++++ .+++.+.+++.+
T Consensus       340 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~  405 (447)
T d1pw4a_         340 AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD  405 (447)
T ss_dssp             TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   11111111   12234556788999999999999999988887754 456777777665