Citrus Sinensis ID: 036787

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-----
Protein Sequence
MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKIMK
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHcccccccccccccccccHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccHccccccccccHHHHHHHHHHHHHccccccccccccccccEEEEHHccccccccccccHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mvrappydgrgmkkgawskeeDDKLGAYILKYGhwnwaqlpksgkscrLRWMnylrpdikhgnytkeeEDTIIKTRQQHGNKIMK
Flexible Loop (DISEMBL)
mvrappydgrgmkkgawskeEDDKLGAYILKYGHWNWAQLPKSGKSCRLRWMNYLrpdikhgnytkeeedtIIKTrqqhgnkimk
Low Complexity Region (SEG)
MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKIMK
Disordered region (IsUnstruct)
***********************KLGAYILKYGHWNWAQLPKSGKSCRLRWMNYLRPDIKHGNY*********************
Disordered Region (DISOPRED)
**RAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKI**
Disordered Region (DISEMBL)
MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTR*********
Disordered Region (DISPRO)
****PPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKI**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKIMK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	85	2.2.26 [Sep-21-2011]
Q7XBH4	257	Myb-related protein Myb4	no	no	0.964	0.319	0.568	3e-21
P81393	232	Myb-related protein 308 O	N/A	no	0.964	0.353	0.534	2e-19
P20024	340	Myb-related protein Zm1 O	N/A	no	0.941	0.235	0.534	2e-19
O49608	274	Transcription factor MYB3	no	no	0.964	0.299	0.545	3e-19
Q9SZP1	282	Transcription repressor M	no	no	0.964	0.290	0.522	6e-19
P20026	267	Myb-related protein Hv1 O	N/A	no	0.964	0.307	0.522	9e-19
P20025	255	Myb-related protein Zm38	N/A	no	0.964	0.321	0.5	2e-18
Q8GWP0	360	Transcription factor MYB3	no	no	0.964	0.227	0.539	2e-18
Q9S9K9	257	Transcription factor MYB3	no	no	0.964	0.319	0.534	2e-18
P81395	274	Myb-related protein 330 O	N/A	no	0.964	0.299	0.511	7e-18

>sp|Q7XBH4|MYB4_ORYSJ Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/88 (56%), Positives = 61/88 (69%), Gaps = 6/88 (6%)

Query: 1  MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPK------SGKSCRLRWMNY 54
          M RAP  +  G+KKG W+ EED  L A+I ++GH NW  LPK       GKSCRLRW+NY
Sbjct: 1  MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINY 60

Query: 55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
          LRPDIK GN++KEEEDTII   +  GN+
Sbjct: 61 LRPDIKRGNFSKEEEDTIIHLHELLGNR 88

Putative transcription factor which is may be involved in cold stress response.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 59/88 (67%), Gaps = 6/88 (6%)

Query: 1  MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS------GKSCRLRWMNY 54
          M R+P  +     KGAW+KEEDD+L AYI  +G   W  LPK+      GKSCRLRW+NY
Sbjct: 1  MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
          LRPD+K GN+T+EE++ IIK     GNK
Sbjct: 61 LRPDLKRGNFTEEEDELIIKLHSLLGNK 88

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|P20024|MYB1_MAIZE Myb-related protein Zm1 OS=Zea mays PE=2 SV=1

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 58/86 (67%), Gaps = 6/86 (6%)

Query: 3  RAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPK------SGKSCRLRWMNYLR 56
          RAP     G+ +G+W+ +ED +L AYI K+GH NW  LPK       GKSCRLRW+NYLR
Sbjct: 5  RAPCCAKVGLNRGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLR 64

Query: 57 PDIKHGNYTKEEEDTIIKTRQQHGNK 82
          PD+K GN+T EEE+ II+     GNK
Sbjct: 65 PDLKRGNFTDEEEEAIIRLHGLLGNK 90

Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1.

Zea mays (taxid: 4577)

>sp|O49608|MYB32_ARATH Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/88 (54%), Positives = 58/88 (65%), Gaps = 6/88 (6%)

Query: 1  MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS------GKSCRLRWMNY 54
          M R+P  +     KGAW+KEEDDKL +YI  +G   W  LP+S      GKSCRLRW+NY
Sbjct: 1  MGRSPCCEKDHTNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINY 60

Query: 55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
          LRPD+K GN+T EE+D IIK     GNK
Sbjct: 61 LRPDLKRGNFTLEEDDLIIKLHSLLGNK 88

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 59/88 (67%), Gaps = 6/88 (6%)

Query: 1  MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS------GKSCRLRWMNY 54
          M R+P  +     KGAW+KEED++L AYI  +G   W  LPK+      GKSCRLRW+NY
Sbjct: 1  MGRSPCCEKAHTNKGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
          LRPD+K GN+T+EE++ IIK     GNK
Sbjct: 61 LRPDLKRGNFTEEEDELIIKLHSLLGNK 88

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

>sp|P20026|MYB1_HORVU Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 6/88 (6%)

Query: 1  MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS------GKSCRLRWMNY 54
          M R+P  +     KGAW+KEEDD+L AYI  +G   W  LPK+      GKSCRLRW+NY
Sbjct: 1  MGRSPCCEKAHTNKGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
          LRPD+K GN++ EE++ IIK     GNK
Sbjct: 61 LRPDLKRGNFSHEEDELIIKLHSLLGNK 88

Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Hordeum vulgare (taxid: 4513)

>sp|P20025|MYB38_MAIZE Myb-related protein Zm38 OS=Zea mays PE=2 SV=1

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 58/88 (65%), Gaps = 6/88 (6%)

Query: 1  MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS------GKSCRLRWMNY 54
          M R+P  +     +GAW+KEED++L AYI  +G   W  LPK+      GKSCRLRW+NY
Sbjct: 1  MGRSPCCEKAHTNRGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
          LRPD+K GN+T +E+D I+K     GNK
Sbjct: 61 LRPDLKRGNFTADEDDLIVKLHSLLGNK 88

Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis.

Zea mays (taxid: 4577)

>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 58/89 (65%), Gaps = 7/89 (7%)

Query: 1  MVRAPPYD-GRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPK------SGKSCRLRWMN 53
          M R+P  D  +G+KKG W  EEDDKL AYI + G+ NW  LPK       GKSCRLRWMN
Sbjct: 1  MGRSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMN 60

Query: 54 YLRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
          YLRPDI+ G ++  EE TI++     GNK
Sbjct: 61 YLRPDIRRGKFSDGEESTIVRLHALLGNK 89

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/88 (53%), Positives = 58/88 (65%), Gaps = 6/88 (6%)

Query: 1  MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS------GKSCRLRWMNY 54
          M R+P  +   M KGAW+KEED  L  YI K+G   W  LP++      GKSCRLRWMNY
Sbjct: 1  MGRSPCCEKAHMNKGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNY 60

Query: 55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
          LRPD+K GN+T+EE++ IIK     GNK
Sbjct: 61 LRPDLKRGNFTEEEDELIIKLHSLLGNK 88

Arabidopsis thaliana (taxid: 3702)

>sp|P81395|MYB30_ANTMA Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 45/88 (51%), Positives = 57/88 (64%), Gaps = 6/88 (6%)

Query: 1  MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS------GKSCRLRWMNY 54
          M R+P  +     KGAW+KEED +L  YI  +G   W  LPK+      GKSCRLRW+NY
Sbjct: 1  MGRSPCCEKAHTNKGAWTKEEDQRLINYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINY 60

Query: 55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
          LRPD+K GN+T+EE++ IIK     GNK
Sbjct: 61 LRPDLKRGNFTEEEDEIIIKLHSLLGNK 88

Transcription factor.

Antirrhinum majus (taxid: 4151)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
224145550	263	predicted protein [Populus trichocarpa]	0.964	0.311	0.681	8e-28
356515226	216	PREDICTED: myb-related protein Myb4-like	0.964	0.379	0.659	3e-26
449438468	271	PREDICTED: transcription repressor MYB4-	0.964	0.302	0.636	1e-25
224145552	262	predicted protein [Populus trichocarpa]	0.964	0.312	0.602	2e-24
302398929	253	MYB domain class transcription factor [M	0.964	0.324	0.625	5e-24
255544351	218	r2r3-myb transcription factor, putative	0.964	0.376	0.625	7e-24
147837078	284	hypothetical protein VITISV_019320 [Viti	0.964	0.288	0.636	7e-24
224126823	256	predicted protein [Populus trichocarpa]	0.964	0.320	0.613	8e-24
225447697	257	PREDICTED: myb-related protein Myb4 [Vit	0.964	0.319	0.636	9e-24
356515232	229	PREDICTED: myb-related protein Myb4-like	0.964	0.358	0.613	2e-23

>gi|224145550|ref|XP_002325682.1| predicted protein [Populus trichocarpa] gi|222862557|gb|EEF00064.1| predicted protein [Populus trichocarpa]

 Score =  127 bits (319), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 60/88 (68%), Positives = 70/88 (79%), Gaps = 6/88 (6%)

Query: 1  MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPK------SGKSCRLRWMNY 54
          MVRAP +D  G+KKGAWS+EEDDKL  +I KYG WNW ++PK       GKSCRLRWMNY
Sbjct: 1  MVRAPYFDKNGVKKGAWSEEEDDKLREHIEKYGLWNWREIPKFAGLSRCGKSCRLRWMNY 60

Query: 55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
          LRPD+KHGNYTKEEED I+K  ++HGNK
Sbjct: 61 LRPDVKHGNYTKEEEDLILKLHEKHGNK 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515226|ref|XP_003526302.1| PREDICTED: myb-related protein Myb4-like [Glycine max]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 68/88 (77%), Gaps = 6/88 (6%)

Query: 1  MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPK------SGKSCRLRWMNY 54
          MVRAP YD  G+KKGAWS+EED+KL AY+ ++GH NW QLPK       GKSCRLRW+NY
Sbjct: 1  MVRAPFYDKNGLKKGAWSREEDEKLTAYVKRHGHSNWRQLPKFAGLARCGKSCRLRWLNY 60

Query: 55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
          LRP++KHGNYT EEE  IIK  Q+ GNK
Sbjct: 61 LRPNLKHGNYTLEEEKIIIKLHQEFGNK 88

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438468|ref|XP_004137010.1| PREDICTED: transcription repressor MYB4-like [Cucumis sativus]

 Score =  120 bits (301), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/88 (63%), Positives = 68/88 (77%), Gaps = 6/88 (6%)

Query: 1  MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPK------SGKSCRLRWMNY 54
          MVRAP YD  G+KKGAWS EED+KL AY+ +YGH NW +LP+       GKSCRLRW+NY
Sbjct: 1  MVRAPFYDENGIKKGAWSAEEDEKLRAYVQEYGHCNWRELPRYAGLLRCGKSCRLRWINY 60

Query: 55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
          LRPD+K GNY+KEEE  I++  QQ+GNK
Sbjct: 61 LRPDVKRGNYSKEEEQLILQLHQQYGNK 88

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145552|ref|XP_002325683.1| predicted protein [Populus trichocarpa] gi|222862558|gb|EEF00065.1| predicted protein [Populus trichocarpa]

 Score =  116 bits (290), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/88 (60%), Positives = 66/88 (75%), Gaps = 6/88 (6%)

Query: 1  MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP------KSGKSCRLRWMNY 54
          MV+A   D  G++KGAWSKEEDDKL  Y+ KYGHWNW QLP      + GKSCRLRWMNY
Sbjct: 1  MVKATLVDKNGLRKGAWSKEEDDKLRVYVQKYGHWNWRQLPRFAGLSRCGKSCRLRWMNY 60

Query: 55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
          LRPD+K GN++ EE++ II+  ++ GNK
Sbjct: 61 LRPDVKRGNFSDEEDNLIIQMHEELGNK 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398929|gb|ADL36759.1| MYB domain class transcription factor [Malus x domestica]

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/88 (62%), Positives = 64/88 (72%), Gaps = 6/88 (6%)

Query: 1  MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPK------SGKSCRLRWMNY 54
          MVR P  D  GMKKG W+ EED KL  Y+ +YG WNW QLPK       GKSCRLRWMNY
Sbjct: 1  MVRTPCRDENGMKKGTWTPEEDRKLIVYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWMNY 60

Query: 55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
          LRP+IK GNY+KEEE+TIIK  ++ GN+
Sbjct: 61 LRPNIKRGNYSKEEEETIIKLHEKLGNR 88

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544351|ref|XP_002513237.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223547611|gb|EEF49105.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 55/88 (62%), Positives = 62/88 (70%), Gaps = 6/88 (6%)

Query: 1  MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPK------SGKSCRLRWMNY 54
          MVR P  D  G+KKG W+ EED KL AY+ +YG WNW QLPK       GKSCRLRW+NY
Sbjct: 1  MVRTPCCDKSGLKKGTWTPEEDRKLMAYVTRYGCWNWRQLPKFAGLSRCGKSCRLRWLNY 60

Query: 55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
          LRP+IK GNYTKEEEDTI+K     GN 
Sbjct: 61 LRPNIKRGNYTKEEEDTILKLHASLGNS 88

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147837078|emb|CAN72480.1| hypothetical protein VITISV_019320 [Vitis vinifera]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 56/88 (63%), Positives = 63/88 (71%), Gaps = 6/88 (6%)

Query: 1  MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPK------SGKSCRLRWMNY 54
          MVR P  D  G+KKG W+ EED KL AYI +YG WNW +LPK       GKSCRLRWMNY
Sbjct: 1  MVRTPCCDKSGLKKGTWTPEEDHKLVAYITRYGCWNWRRLPKYAGLMRCGKSCRLRWMNY 60

Query: 55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
          LRP+IK GNY+KEEEDTIIK     GN+
Sbjct: 61 LRPNIKRGNYSKEEEDTIIKLHASLGNR 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126823|ref|XP_002319935.1| predicted protein [Populus trichocarpa] gi|222858311|gb|EEE95858.1| predicted protein [Populus trichocarpa]

 Score =  114 bits (285), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 64/88 (72%), Gaps = 6/88 (6%)

Query: 1  MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPK------SGKSCRLRWMNY 54
          MVR P  D  G+KKGAW+ EED KL AY+ +YG WNW QLPK       GKSCRLRW+NY
Sbjct: 1  MVRTPCCDKTGLKKGAWTPEEDRKLMAYVTRYGCWNWRQLPKFAGLQRCGKSCRLRWLNY 60

Query: 55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
          LRP+IK GNY+KEEE+TII   +  GN+
Sbjct: 61 LRPNIKRGNYSKEEEETIISLHETMGNR 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447697|ref|XP_002272704.1| PREDICTED: myb-related protein Myb4 [Vitis vinifera] gi|296081257|emb|CBI18001.3| unnamed protein product [Vitis vinifera]

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 56/88 (63%), Positives = 63/88 (71%), Gaps = 6/88 (6%)

Query: 1  MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPK------SGKSCRLRWMNY 54
          MVR P  D  G+KKG W+ EED KL AYI +YG WNW +LPK       GKSCRLRWMNY
Sbjct: 1  MVRTPCCDKSGLKKGTWTPEEDHKLVAYITRYGCWNWRRLPKYAGLMRCGKSCRLRWMNY 60

Query: 55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
          LRP+IK GNY+KEEEDTIIK     GN+
Sbjct: 61 LRPNIKRGNYSKEEEDTIIKLHASLGNR 88

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515232|ref|XP_003526305.1| PREDICTED: myb-related protein Myb4-like [Glycine max]

 Score =  113 bits (282), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/88 (61%), Positives = 63/88 (71%), Gaps = 6/88 (6%)

Query: 1  MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPK------SGKSCRLRWMNY 54
          MVR P  D  G+KKG W+ EED KL  YI +YGHWNW  LPK       GKSCRLRW+NY
Sbjct: 1  MVRTPSCDKNGVKKGTWTPEEDKKLVEYITRYGHWNWRLLPKFAGLARCGKSCRLRWLNY 60

Query: 55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
          LRP++K GNYTKEEE+TIIK  +  GN+
Sbjct: 61 LRPNLKRGNYTKEEEETIIKLHRHLGNR 88

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	85
TAIR|locus:2207330	294	MYB63 "myb domain protein 63"	0.976	0.282	0.573	1.6e-22
TAIR|locus:2087690	239	MYB10 "myb domain protein 10"	0.976	0.347	0.573	2.1e-22
TAIR|locus:2149000	336	MYB9 "myb domain protein 9" [A	0.964	0.244	0.579	4.3e-22
TAIR|locus:2086233	285	MYB15 "myb domain protein 15"	0.964	0.287	0.568	7e-22
TAIR|locus:2032860	274	MYB58 "myb domain protein 58"	0.976	0.302	0.573	1.1e-21
TAIR|locus:2031531	333	MYB122 "myb domain protein 122	0.964	0.246	0.534	3.9e-21
TAIR|locus:2075387	321	MYB107 "myb domain protein 107	0.964	0.255	0.568	6.3e-21
TAIR|locus:2171845	310	MYB53 "myb domain protein 53"	0.964	0.264	0.556	1e-20
TAIR|locus:2141231	350	MYB102 "MYB-like 102" [Arabido	0.964	0.234	0.545	1.3e-20
TAIR|locus:2011786	296	MYB72 "myb domain protein 72"	0.976	0.280	0.539	3.5e-20

TAIR|locus:2207330 MYB63 "myb domain protein 63" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 51/89 (57%), Positives = 61/89 (68%)

Query:     3 RAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS------GKSCRLRWMNYLR 56
             RAP  D   +K+G WS EED KL ++I K+GH NW  LPK       GKSCRLRW+NYLR
Sbjct:     5 RAPCCDKTKVKRGPWSPEEDIKLISFIQKFGHENWRSLPKQSGLLRCGKSCRLRWINYLR 64

Query:    57 PDIKHGNYTKEEEDTIIKTRQQHGNKIMK 85
             PD+K GN+T EEE+TIIK    +GNK  K
Sbjct:    65 PDLKRGNFTSEEEETIIKLHHNYGNKWSK 93

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2087690 MYB10 "myb domain protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 51/89 (57%), Positives = 61/89 (68%)

Query:     3 RAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPK------SGKSCRLRWMNYLR 56
             RAP  D   +K+G WS EE ++L ++ILK GH NW  LPK       GKSCRLRW+NYLR
Sbjct:     5 RAPCCDKSQVKRGPWSDEESERLRSFILKNGHQNWRSLPKLAGLMRCGKSCRLRWINYLR 64

Query:    57 PDIKHGNYTKEEEDTIIKTRQQHGNKIMK 85
             P +K GN+TKEEEDTII   Q +GNK  K
Sbjct:    65 PGLKRGNFTKEEEDTIIHLHQAYGNKWSK 93

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2149000 MYB9 "myb domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 51/88 (57%), Positives = 60/88 (68%)

Query:     1 MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS------GKSCRLRWMNY 54
             M R+P  D  G+KKG W++EEDDKL  +I K+GH +W  LPK       GKSCRLRW NY
Sbjct:     1 MGRSPCCDENGLKKGPWTQEEDDKLIDHIQKHGHGSWRALPKQAGLNRCGKSCRLRWTNY 60

Query:    55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
             LRPDIK GN+T+EEE TII      GNK
Sbjct:    61 LRPDIKRGNFTEEEEQTIINLHSLLGNK 88

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2086233 MYB15 "myb domain protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 50/88 (56%), Positives = 60/88 (68%)

Query:     1 MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS------GKSCRLRWMNY 54
             M RAP  +  G+K+G W+ EED  L ++IL +GH NW  LPK       GKSCRLRWMNY
Sbjct:     1 MGRAPCCEKMGLKRGPWTPEEDQILVSFILNHGHSNWRALPKQAGLLRCGKSCRLRWMNY 60

Query:    55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
             L+PDIK GN+TKEEED II   Q  GN+
Sbjct:    61 LKPDIKRGNFTKEEEDAIISLHQILGNR 88

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2032860 MYB58 "myb domain protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 51/89 (57%), Positives = 60/89 (67%)

Query:     3 RAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS------GKSCRLRWMNYLR 56
             RAP  D   +K+G WS +ED KL ++I K GH NW  LPK       GKSCRLRW+NYLR
Sbjct:     5 RAPCCDKTKVKRGPWSHDEDLKLISFIHKNGHENWRSLPKQAGLLRCGKSCRLRWINYLR 64

Query:    57 PDIKHGNYTKEEEDTIIKTRQQHGNKIMK 85
             PD+K GN++ EEEDTIIK  Q  GNK  K
Sbjct:    65 PDVKRGNFSAEEEDTIIKLHQSFGNKWSK 93

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2031531 MYB122 "myb domain protein 122" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 47/88 (53%), Positives = 59/88 (67%)

Query:     1 MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP------KSGKSCRLRWMNY 54
             MVR P     G+KKGAW++EED KL AY+ ++G   W  LP      + GKSCRLRW NY
Sbjct:     1 MVRTPCCRAEGLKKGAWTQEEDQKLIAYVQRHGEGGWRTLPDKAGLKRCGKSCRLRWANY 60

Query:    55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
             LRPDIK G ++++EED+II     HGNK
Sbjct:    61 LRPDIKRGEFSQDEEDSIINLHAIHGNK 88

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009506 "plasmodesma" evidence=IDA

GO:0009625 "response to insect" evidence=IEP

TAIR|locus:2075387 MYB107 "myb domain protein 107" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 50/88 (56%), Positives = 57/88 (64%)

Query:     1 MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS------GKSCRLRWMNY 54
             M R+P  D  G+KKG W+ EED KL  +I K+GH +W  LPK       GKSCRLRW NY
Sbjct:     1 MGRSPCCDESGLKKGPWTPEEDQKLINHIRKHGHGSWRALPKQAGLNRCGKSCRLRWTNY 60

Query:    55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
             LRPDIK GN+T EEE TII      GNK
Sbjct:    61 LRPDIKRGNFTAEEEQTIINLHSLLGNK 88

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

TAIR|locus:2171845 MYB53 "myb domain protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 49/88 (55%), Positives = 58/88 (65%)

Query:     1 MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPK------SGKSCRLRWMNY 54
             M R+P  D  G+KKG W  EEDDKL  YI K+GH +W+ LPK       GKSCRLRW NY
Sbjct:     1 MGRSPSSDETGLKKGPWLPEEDDKLINYIHKHGHSSWSALPKLAGLNRCGKSCRLRWTNY 60

Query:    55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
             LRPDIK G ++ EEE+TI+      GNK
Sbjct:    61 LRPDIKRGKFSAEEEETILNLHAVLGNK 88

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2141231 MYB102 "MYB-like 102" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 48/88 (54%), Positives = 59/88 (67%)

Query:     1 MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS------GKSCRLRWMNY 54
             M R+P  +  G+KKG W+ EED KL  YI K+G+ NW  LPK+      GKSCRLRW NY
Sbjct:     1 MARSPCCEKNGLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNY 60

Query:    55 LRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
             LRPDIK G ++ EEE+TII+     GNK
Sbjct:    61 LRPDIKRGRFSFEEEETIIQLHSFLGNK 88

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2011786 MYB72 "myb domain protein 72" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 48/89 (53%), Positives = 58/89 (65%)

Query:     3 RAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPK------SGKSCRLRWMNYLR 56
             RAP  D   +K+G WS +ED  L  +I K+GH NW  LPK       GKSCRLRW+NYLR
Sbjct:     5 RAPCCDKNKVKRGPWSPQEDLTLITFIQKHGHQNWRSLPKLAGLLRCGKSCRLRWINYLR 64

Query:    57 PDIKHGNYTKEEEDTIIKTRQQHGNKIMK 85
             PD+K GN++K+EED II   Q  GNK  K
Sbjct:    65 PDVKRGNFSKKEEDAIIHYHQTLGNKWSK 93

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009866 "induced systemic resistance, ethylene mediated signaling pathway" evidence=IMP

GO:0071281 "cellular response to iron ion" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IEP

GO:0071732 "cellular response to nitric oxide" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: MYB064 hypothetical protein (115 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	85
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	8e-24
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	2e-19
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	5e-10
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	7e-09
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	8e-09
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-06
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-05

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score = 92.3 bits (229), Expect = 8e-24
 Identities = 39/77 (50%), Positives = 54/77 (70%), Gaps = 6/77 (7%)

Query: 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS------GKSCRLRWMNYLRPDIKHGNYT 65
          ++KG WS EED+KL  +I KYGH  W+ +PK       GKSCRLRW+NYLRPD+K G ++
Sbjct: 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFS 71

Query: 66 KEEEDTIIKTRQQHGNK 82
          ++EE+ II+     GN+
Sbjct: 72 QQEENLIIELHAVLGNR 88

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score = 78.2 bits (192), Expect = 2e-19
 Identities = 39/78 (50%), Positives = 50/78 (64%), Gaps = 6/78 (7%)

Query: 11 GMKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS------GKSCRLRWMNYLRPDIKHGNY 64
          GMK+G W+ EED+ L ++I K G   W  LPK       GKSCRLRWMNYLRP +K G  
Sbjct: 22 GMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGI 81

Query: 65 TKEEEDTIIKTRQQHGNK 82
          T +EED I++  +  GN+
Sbjct: 82 TSDEEDLILRLHRLLGNR 99

Length = 249

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 49.6 bits (119), Expect = 5e-10
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 5/58 (8%)

Query: 17 WSKEEDDKLGAYILKYGHWNWAQ----LPKSGKSCRLRWMNYLRPDIKHGNYTKEEED 70
          W++EED+KL   + KYG+ +W Q    L ++  +CR RW   LRP    G +TKEE+ 
Sbjct: 1  WTEEEDEKLLKLVEKYGN-DWKQIAEELGRTPSACRDRWRRKLRPKRSRGPWTKEEDQ 57

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 50.2 bits (120), Expect = 7e-09
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 13 KKGAWSKEEDDKLGAYILKYGHWNWAQL-----PKSGKSCRLRWMNYLRPDIKHGNYTKE 67
          K G+W + ED+ L A + K G  NW+++       +GK    RW N+L P +K  N+++E
Sbjct: 19 KGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEE 78

Query: 68 EEDTIIKTRQQHGNKI 83
          E++ +I   ++ G + 
Sbjct: 79 EDEQLIDLDKELGTQW 94

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 46.4 bits (111), Expect = 8e-09
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 5/47 (10%)

Query: 14 KGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYL 55
          +G W+ EED+ L   + K+G+ NW+++      ++   C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 40.3 bits (95), Expect = 2e-06
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 5/49 (10%)

Query: 14 KGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRP 57
          KG W++EED+ L   + KYG  NW ++      ++ + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 37.6 bits (88), Expect = 2e-05
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 5/45 (11%)

Query: 16 AWSKEEDDKLGAYILKYGHWNWAQL-----PKSGKSCRLRWMNYL 55
           W++EED+ L   + KYG  NW ++      ++ K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	85
PLN03091	459	hypothetical protein; Provisional	99.98
PLN03212	249	Transcription repressor MYB5; Provisional	99.97
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.96
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.8
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.77
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.57
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.56
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.46
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.43
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.35
PLN03212	249	Transcription repressor MYB5; Provisional	99.34
PLN03091	459	hypothetical protein; Provisional	99.3
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.28
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.15
KOG0048	238	consensus Transcription factor, Myb superfamily [T	98.98
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.56
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	98.2
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	98.09
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	98.07
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.91
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	97.87
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	97.73
KOG0051	607	consensus RNA polymerase I termination factor, Myb	97.51
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	97.45
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	97.38
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	97.27
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.03
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.0
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.96
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	96.76
PRK13923	170	putative spore coat protein regulator protein YlbO	96.62
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.58
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	96.12
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	94.94
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	94.85
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	93.65
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	92.22
KOG4282	345	consensus Transcription factor GT-2 and related pr	92.19
PF11626	87	Rap1_C: TRF2-interacting telomeric protein/Rap1 -	91.99
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	91.56
KOG1279	506	consensus Chromatin remodeling factor subunit and	90.43
PF09420	164	Nop16: Ribosome biogenesis protein Nop16; InterPro	88.16
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	87.87
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	87.22
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	85.75
PF13404	42	HTH_AsnC-type: AsnC-type helix-turn-helix domain;	84.11
KOG2656	445	consensus DNA methyltransferase 1-associated prote	83.27
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	81.56
PRK11179	153	DNA-binding transcriptional regulator AsnC; Provis	81.34

>PLN03091 hypothetical protein; Provisional

Probab=99.98  E-value=1e-32  Score=200.89  Aligned_cols=85  Identities=47%  Similarity=0.882  Sum_probs=82.9

Q ss_pred             CCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc------cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHH
Q 036787            1 MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP------KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIK   74 (85)
Q Consensus         1 ~~r~~~~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia------r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~   74 (85)
                      |||++||++.++++|+||+|||++|+.+|.+||.++|..||      |+++|||+||.++|+|.+++++||+|||.+|++
T Consensus         1 mgr~~Cc~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe   80 (459)
T PLN03091          1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE   80 (459)
T ss_pred             CCCCccCcCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999998      699999999999999999999999999999999


Q ss_pred             HHHHhCCCCCC
Q 036787           75 TRQQHGNKIMK   85 (85)
Q Consensus        75 ~~~~~g~~W~k   85 (85)
                      ++..||++|++
T Consensus        81 L~k~~GnKWsk   91 (459)
T PLN03091         81 LHAVLGNRWSQ   91 (459)
T ss_pred             HHHHhCcchHH
Confidence            99999999964

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.97  E-value=4.2e-32  Score=186.11  Aligned_cols=83  Identities=47%  Similarity=0.884  Sum_probs=79.9

Q ss_pred             CCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc------cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHH
Q 036787            3 RAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP------KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTR   76 (85)
Q Consensus         3 r~~~~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia------r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~   76 (85)
                      +.|||.++++++++||+|||++|+.+|++||..+|..||      |+++|||+||.++|+|.+++++||+|||.+|++++
T Consensus        14 ~~pcc~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~   93 (249)
T PLN03212         14 TTPCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLH   93 (249)
T ss_pred             CCCCcccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHH
Confidence            679999999999999999999999999999988999997      69999999999999999999999999999999999


Q ss_pred             HHhCCCCCC
Q 036787           77 QQHGNKIMK   85 (85)
Q Consensus        77 ~~~g~~W~k   85 (85)
                      ..||++|++
T Consensus        94 ~~~GnKWs~  102 (249)
T PLN03212         94 RLLGNRWSL  102 (249)
T ss_pred             HhccccHHH
Confidence            999999963

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.96  E-value=1.6e-29  Score=173.63  Aligned_cols=76  Identities=49%  Similarity=0.834  Sum_probs=71.9

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCCccccc------cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCCCC
Q 036787           10 RGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP------KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKI   83 (85)
Q Consensus        10 ~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia------r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~W   83 (85)
                      +.+.||+||+|||++|+.+|..||.++|..||      |++++||.||.|||+|+++++.||+|||.+|++++..+||+|
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW   84 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW   84 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence            33558999999999999999999999999999      599999999999999999999999999999999999999999


Q ss_pred             CC
Q 036787           84 MK   85 (85)
Q Consensus        84 ~k   85 (85)
                      ++
T Consensus        85 s~   86 (238)
T KOG0048|consen   85 SL   86 (238)
T ss_pred             HH
Confidence            73

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.80  E-value=9.6e-20  Score=101.24  Aligned_cols=55  Identities=45%  Similarity=0.939  Sum_probs=49.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHHHHH
Q 036787           17 WSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTI   72 (85)
Q Consensus        17 Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L   72 (85)
                      ||+|||++|+.+|..|| .+|..||     ||+.||+.||.++|.|.+++++||++||+.|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 6999998     7999999999999999999999999999987

...

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.77  E-value=2.6e-19  Score=135.86  Aligned_cols=85  Identities=26%  Similarity=0.465  Sum_probs=79.9

Q ss_pred             CCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHH
Q 036787            1 MVRAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKT   75 (85)
Q Consensus         1 ~~r~~~~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~   75 (85)
                      ++|+...+.|++++|+||++||.+|+.+|.+||...|..|-     |+..|||+||.|.|+...+.+.||-.||.+|+.+
T Consensus       347 I~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~  426 (939)
T KOG0049|consen  347 ITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYA  426 (939)
T ss_pred             hhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHH
Confidence            47889999999999999999999999999999999998885     8999999999999999999999999999999999


Q ss_pred             HHHhCC-CCCC
Q 036787           76 RQQHGN-KIMK   85 (85)
Q Consensus        76 ~~~~g~-~W~k   85 (85)
                      |.+||. +|+|
T Consensus       427 V~~YG~g~Wak  437 (939)
T KOG0049|consen  427 VKVYGKGNWAK  437 (939)
T ss_pred             HHHHccchHHH
Confidence            999996 5864

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.57  E-value=2.1e-15  Score=80.62  Aligned_cols=42  Identities=43%  Similarity=0.918  Sum_probs=37.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccc------cchhHHHHHHhhhh
Q 036787           14 KGAWSKEEDDKLGAYILKYGHWNWAQLP------KSGKSCRLRWMNYL   55 (85)
Q Consensus        14 kg~Wt~eED~~L~~~v~~~g~~~W~~Ia------r~~~qcr~rw~~~L   55 (85)
                      |++||+|||++|+++|.+||.++|..||      ||+.||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            6899999999999999999976699998      69999999999885

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.56  E-value=3.9e-15  Score=113.42  Aligned_cols=79  Identities=28%  Similarity=0.433  Sum_probs=66.9

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc------cchhHHHH-------------------------------
Q 036787            7 YDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP------KSGKSCRL-------------------------------   49 (85)
Q Consensus         7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia------r~~~qcr~-------------------------------   49 (85)
                      +++|.++|..||+|||+.|..+...++..+|..||      |+..||.+                               
T Consensus       246 ~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~~  325 (939)
T KOG0049|consen  246 ELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITSI  325 (939)
T ss_pred             hcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhhc
Confidence            56788888888888888888888888877888887      46666655                               


Q ss_pred             -----------------------HHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCCC-CCC
Q 036787           50 -----------------------RWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNK-IMK   85 (85)
Q Consensus        50 -----------------------rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~-W~k   85 (85)
                                             ||...|+|.+++|+||.+||.+|+.+|.+||.+ |.|
T Consensus       326 nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k  385 (939)
T KOG0049|consen  326 NSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAK  385 (939)
T ss_pred             cCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhh
Confidence                                   888889999999999999999999999999986 754

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.46  E-value=3.6e-14  Score=106.19  Aligned_cols=76  Identities=32%  Similarity=0.654  Sum_probs=72.2

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCCCC
Q 036787            9 GRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKI   83 (85)
Q Consensus         9 ~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~W   83 (85)
                      ..+++.|.|+..||+.|..+|..+|+++|..||     ++++||+.||.++++|.+++.+|+.+||.+|+.+..++|++|
T Consensus        15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~w   94 (512)
T COG5147          15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW   94 (512)
T ss_pred             cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchh
Confidence            346789999999999999999999999999998     599999999999999999999999999999999999999999


Q ss_pred             C
Q 036787           84 M   84 (85)
Q Consensus        84 ~   84 (85)
                      +
T Consensus        95 s   95 (512)
T COG5147          95 S   95 (512)
T ss_pred             h
Confidence            5

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=6.3e-14  Score=104.46  Aligned_cols=73  Identities=29%  Similarity=0.746  Sum_probs=69.8

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787           12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      ++.|.|+.-||+.|...|.+||.+.|+.|+     ++++||+.||..+|+|.|++..||.+||..|+.++..+...|.
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwr   82 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWR   82 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccc
Confidence            578899999999999999999999999999     3999999999999999999999999999999999999999984

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.35  E-value=1.4e-12  Score=98.97  Aligned_cols=64  Identities=30%  Similarity=0.729  Sum_probs=60.6

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccc----cchhHHHHHHhhhhcCC--CCCCCCCHHHHHHHHHHHH
Q 036787           13 KKGAWSKEEDDKLGAYILKYGHWNWAQLP----KSGKSCRLRWMNYLRPD--IKHGNYTKEEEDTIIKTRQ   77 (85)
Q Consensus        13 ~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia----r~~~qcr~rw~~~L~~~--~~~~~wt~eEd~~L~~~~~   77 (85)
                      .+|.||++|++.|..+|.++| +.|..|+    |.|..|++||+++..+.  .+++.||.+|.+.|+++|+
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lgr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~  452 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKALGRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVN  452 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHH
Confidence            899999999999999999999 7999997    79999999999999876  4889999999999999997

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.34  E-value=1.8e-13  Score=94.47  Aligned_cols=54  Identities=19%  Similarity=0.334  Sum_probs=48.6

Q ss_pred             CCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCC
Q 036787            4 APPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPD   58 (85)
Q Consensus         4 ~~~~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~   58 (85)
                      +-.+++|.+++++||+|||++|+.++..+| +.|..||     ||..+|++||..+|...
T Consensus        68 W~N~L~P~I~kgpWT~EED~lLlel~~~~G-nKWs~IAk~LpGRTDnqIKNRWns~LrK~  126 (249)
T PLN03212         68 WMNYLRPSVKRGGITSDEEDLILRLHRLLG-NRWSLIAGRIPGRTDNEIKNYWNTHLRKK  126 (249)
T ss_pred             HHHhhchhcccCCCChHHHHHHHHHHHhcc-ccHHHHHhhcCCCCHHHHHHHHHHHHhHH
Confidence            345678999999999999999999999999 6999999     79999999999988654

>PLN03091 hypothetical protein; Provisional

Probab=99.30  E-value=7.2e-13  Score=97.46  Aligned_cols=54  Identities=20%  Similarity=0.425  Sum_probs=48.1

Q ss_pred             CCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcC
Q 036787            3 RAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRP   57 (85)
Q Consensus         3 r~~~~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~   57 (85)
                      |+-.+++|.+++|+||+|||++|+.++..+| .+|..||     |++.+|++||..+|..
T Consensus        56 RW~NyLdP~IkKgpWT~EED~lLLeL~k~~G-nKWskIAk~LPGRTDnqIKNRWnslLKK  114 (459)
T PLN03091         56 RWINYLRPDLKRGTFSQQEENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKK  114 (459)
T ss_pred             HHHhccCCcccCCCCCHHHHHHHHHHHHHhC-cchHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            3345788999999999999999999999999 6999999     7999999999987643

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.28  E-value=5.4e-12  Score=65.81  Aligned_cols=43  Identities=42%  Similarity=0.958  Sum_probs=39.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhc
Q 036787           14 KGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLR   56 (85)
Q Consensus        14 kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~   56 (85)
                      +++||++||.+|+.++..||..+|..||     ||+.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            4789999999999999999977999998     699999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.15  E-value=5.3e-11  Score=61.12  Aligned_cols=40  Identities=43%  Similarity=0.914  Sum_probs=36.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhh
Q 036787           16 AWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYL   55 (85)
Q Consensus        16 ~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L   55 (85)
                      +||++||..|+.++..+|..+|..||     |++.+|+.+|.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            59999999999999999977999998     69999999998763

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=98.98  E-value=4.4e-10  Score=77.38  Aligned_cols=53  Identities=21%  Similarity=0.416  Sum_probs=48.2

Q ss_pred             CCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcC
Q 036787            4 APPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRP   57 (85)
Q Consensus         4 ~~~~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~   57 (85)
                      .--+++|.+++|.||+|||.+|+.++..+| +.|+.||     ||.+.++..|..+|..
T Consensus        52 W~NyLrP~ikrg~fT~eEe~~Ii~lH~~~G-NrWs~IA~~LPGRTDNeIKN~Wnt~lkk  109 (238)
T KOG0048|consen   52 WTNYLRPDLKRGNFSDEEEDLIIKLHALLG-NRWSLIAGRLPGRTDNEVKNHWNTHLKK  109 (238)
T ss_pred             hhcccCCCccCCCCCHHHHHHHHHHHHHHC-cHHHHHHhhCCCcCHHHHHHHHHHHHHH
Confidence            345789999999999999999999999999 7999999     6999999999888754

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.56  E-value=2.6e-08  Score=75.02  Aligned_cols=66  Identities=27%  Similarity=0.687  Sum_probs=60.0

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccc----cchhHHHHHHhhhhcC--CCCCCCCCHHHHHHHHHHHHH
Q 036787           12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP----KSGKSCRLRWMNYLRP--DIKHGNYTKEEEDTIIKTRQQ   78 (85)
Q Consensus        12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia----r~~~qcr~rw~~~L~~--~~~~~~wt~eEd~~L~~~~~~   78 (85)
                      -.+|.||++|++.|..++..+| ..|..|+    |-+..|++||+++..+  .+++++||.+|+.+|...+..
T Consensus       289 ~~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~~~rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e  360 (512)
T COG5147         289 EQRGKWTKEEEQELAKLVVEHG-GSWTEIGKLLGRMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNE  360 (512)
T ss_pred             hhhccCcccccccccccccccc-chhhHhhhhhccCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHH
Confidence            4589999999999999999999 6999998    5999999999999887  678899999999999988864

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=98.20  E-value=2.5e-06  Score=63.07  Aligned_cols=53  Identities=19%  Similarity=0.391  Sum_probs=44.2

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhh-cCCCCCCC
Q 036787           11 GMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYL-RPDIKHGN   63 (85)
Q Consensus        11 ~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L-~~~~~~~~   63 (85)
                      .+-...||.+|+-+|+++++.||.|||..||     |+..+|+++|.+++ +..+..-+
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~s~~~~~~  127 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVNSPIFPLP  127 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhcCcccccc
Confidence            4567789999999999999999999999999     59999999999965 43333333

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=98.09  E-value=2.7e-06  Score=44.96  Aligned_cols=24  Identities=21%  Similarity=0.524  Sum_probs=20.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-CC
Q 036787           61 HGNYTKEEEDTIIKTRQQHGNK-IM   84 (85)
Q Consensus        61 ~~~wt~eEd~~L~~~~~~~g~~-W~   84 (85)
                      +++||++||.+|++++.+||.. |.
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~   25 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWK   25 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHH
Confidence            5799999999999999999998 84

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=98.07  E-value=9.4e-06  Score=44.85  Aligned_cols=42  Identities=14%  Similarity=0.358  Sum_probs=37.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCc---cccc------c-chhHHHHHHhhhh
Q 036787           14 KGAWSKEEDDKLGAYILKYGHWNW---AQLP------K-SGKSCRLRWMNYL   55 (85)
Q Consensus        14 kg~Wt~eED~~L~~~v~~~g~~~W---~~Ia------r-~~~qcr~rw~~~L   55 (85)
                      +-.||+||..+++.+++.+|.++|   ..|+      + |..||+.+.+.|.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            457999999999999999997799   8775      4 8999999998875

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.91  E-value=5.6e-06  Score=62.64  Aligned_cols=49  Identities=27%  Similarity=0.506  Sum_probs=44.6

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc----cchhHHHHHHhhhhc
Q 036787            7 YDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP----KSGKSCRLRWMNYLR   56 (85)
Q Consensus         7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia----r~~~qcr~rw~~~L~   56 (85)
                      ..+|.|++.-||.|||++|+.+..... ..|..|+    |++.||-+||.+.|+
T Consensus        52 ~ldp~i~~tews~eederlLhlakl~p-~qwrtIa~i~gr~~~qc~eRy~~ll~  104 (617)
T KOG0050|consen   52 WLDPAIKKTEWSREEDERLLHLAKLEP-TQWRTIADIMGRTSQQCLERYNNLLD  104 (617)
T ss_pred             HhCHHHhhhhhhhhHHHHHHHHHHhcC-CccchHHHHhhhhHHHHHHHHHHHHH
Confidence            457889999999999999999999998 5999998    899999999999873

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=97.87  E-value=5.6e-06  Score=45.39  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=18.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCC
Q 036787           64 YTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        64 wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      ||++||.+|+++|..||++|+
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~   21 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWK   21 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HH
T ss_pred             CCHHHHHHHHHHHHHHCcCHH
Confidence            999999999999999999995

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=97.73  E-value=3.5e-05  Score=39.44  Aligned_cols=24  Identities=29%  Similarity=0.558  Sum_probs=21.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CCCC
Q 036787           61 HGNYTKEEEDTIIKTRQQHG-NKIM   84 (85)
Q Consensus        61 ~~~wt~eEd~~L~~~~~~~g-~~W~   84 (85)
                      +++||++||.+|+.++..|| ++|.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~   25 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWE   25 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHH
Confidence            36899999999999999999 8884

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=97.51  E-value=0.00016  Score=55.71  Aligned_cols=66  Identities=24%  Similarity=0.506  Sum_probs=50.4

Q ss_pred             CCcCCCCHHHHHHHHHHHH-------Hh------------------CCCCccccc-----cchhHHHHHHhhhh-cCCCC
Q 036787           12 MKKGAWSKEEDDKLGAYIL-------KY------------------GHWNWAQLP-----KSGKSCRLRWMNYL-RPDIK   60 (85)
Q Consensus        12 ~~kg~Wt~eED~~L~~~v~-------~~------------------g~~~W~~Ia-----r~~~qcr~rw~~~L-~~~~~   60 (85)
                      .++|+||.||.+.|+++|+       ++                  ...+|..|+     |+..|||..|...+ .|..+
T Consensus       434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n  513 (607)
T KOG0051|consen  434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFN  513 (607)
T ss_pred             cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhh
Confidence            6899999999999999996       22                  224799998     79999999999976 56667


Q ss_pred             CCCCCH-HHHHHHHHHHH
Q 036787           61 HGNYTK-EEEDTIIKTRQ   77 (85)
Q Consensus        61 ~~~wt~-eEd~~L~~~~~   77 (85)
                      ...|.. .+..-|++-..
T Consensus       514 ~~~~~~~~~~v~l~ErL~  531 (607)
T KOG0051|consen  514 KRQESKGSDMVWLLERLS  531 (607)
T ss_pred             cccccccchhHHHHHHHH
Confidence            777776 34455554443

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=97.45  E-value=0.00014  Score=36.65  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=20.4

Q ss_pred             CCCHHHHHHHHHHHHHhC-CCCC
Q 036787           63 NYTKEEEDTIIKTRQQHG-NKIM   84 (85)
Q Consensus        63 ~wt~eEd~~L~~~~~~~g-~~W~   84 (85)
                      +||++||..|+.++..|| .+|.
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~   23 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWE   23 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHH
Confidence            699999999999999999 7884

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=97.38  E-value=8.8e-05  Score=41.97  Aligned_cols=45  Identities=24%  Similarity=0.435  Sum_probs=28.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhC--------CCCcccccc------chhHHHHHHhhhhcCC
Q 036787           14 KGAWSKEEDDKLGAYILKYG--------HWNWAQLPK------SGKSCRLRWMNYLRPD   58 (85)
Q Consensus        14 kg~Wt~eED~~L~~~v~~~g--------~~~W~~Iar------~~~qcr~rw~~~L~~~   58 (85)
                      +.+||.+||+.|+..|..+.        ..-|.+++.      |-.+-|+||..+|.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~   60 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR   60 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence            45899999999999997652        113766663      6778899999998764

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=97.27  E-value=0.00023  Score=41.45  Aligned_cols=41  Identities=22%  Similarity=0.513  Sum_probs=30.0

Q ss_pred             CCCCHHHHHHHHHHHHH--h----C--C---C--Cccccc---------cchhHHHHHHhhhh
Q 036787           15 GAWSKEEDDKLGAYILK--Y----G--H---W--NWAQLP---------KSGKSCRLRWMNYL   55 (85)
Q Consensus        15 g~Wt~eED~~L~~~v~~--~----g--~---~--~W~~Ia---------r~~~qcr~rw~~~L   55 (85)
                      ..||.+|...|+.++..  +    +  .   +  -|..||         ||+.||+.+|.+..
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            57999999999999877  2    1  0   1  499998         59999999999865

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.03  E-value=0.00045  Score=51.97  Aligned_cols=41  Identities=24%  Similarity=0.535  Sum_probs=37.6

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCcccccc-----chhHHHHHHhhh
Q 036787           13 KKGAWSKEEDDKLGAYILKYGHWNWAQLPK-----SGKSCRLRWMNY   54 (85)
Q Consensus        13 ~kg~Wt~eED~~L~~~v~~~g~~~W~~Iar-----~~~qcr~rw~~~   54 (85)
                      ....||.+|-.+|++.++.|| .+|.+||+     +..||-.+|.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            566999999999999999999 59999994     999999999874

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.00  E-value=0.00056  Score=44.96  Aligned_cols=45  Identities=29%  Similarity=0.710  Sum_probs=35.1

Q ss_pred             CCcCCCCHHHHHHHHHHHHHh---CCC---Ccccc----ccchhHHHHHHhhhhc
Q 036787           12 MKKGAWSKEEDDKLGAYILKY---GHW---NWAQL----PKSGKSCRLRWMNYLR   56 (85)
Q Consensus        12 ~~kg~Wt~eED~~L~~~v~~~---g~~---~W~~I----ar~~~qcr~rw~~~L~   56 (85)
                      .+...||.|||.+|...|-.|   |.-   -+..+    +||+..|.-||+.++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~RTsAACGFRWNs~VR   56 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALNRTAAACGFRWNAYVR   56 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHcccHHHhcchHHHHHH
Confidence            356689999999999999988   311   23333    4899999999999885

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.96  E-value=0.00081  Score=51.15  Aligned_cols=43  Identities=26%  Similarity=0.533  Sum_probs=38.7

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhh
Q 036787           11 GMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNY   54 (85)
Q Consensus        11 ~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~   54 (85)
                      .-.+..||.+|+.+|+..|+.|| .+|.+||     ||..||-.+|.+.
T Consensus       250 ~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  250 ESARPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             ccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCCCHHHHHHHHHhc
Confidence            34578899999999999999999 5999999     6999999999874

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=96.76  E-value=0.0025  Score=43.25  Aligned_cols=60  Identities=22%  Similarity=0.338  Sum_probs=44.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCc------ccccc--chhHHHHHHhhhh-cCCC--------------------CCCCCCH
Q 036787           16 AWSKEEDDKLGAYILKYGHWNW------AQLPK--SGKSCRLRWMNYL-RPDI--------------------KHGNYTK   66 (85)
Q Consensus        16 ~Wt~eED~~L~~~v~~~g~~~W------~~Iar--~~~qcr~rw~~~L-~~~~--------------------~~~~wt~   66 (85)
                      +|++++|-.|+.+|..-.  +-      .++|+  |-..+.+||+..| +|.+                    .+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            599999999999997643  22      33444  8899999999876 3321                    2358999


Q ss_pred             HHHHHHHHHHH
Q 036787           67 EEEDTIIKTRQ   77 (85)
Q Consensus        67 eEd~~L~~~~~   77 (85)
                      +|+++|.....
T Consensus        79 ~EE~lL~~v~s   89 (199)
T PF13325_consen   79 EEEQLLGTVAS   89 (199)
T ss_pred             HHHHHHHhhhh
Confidence            99999988654

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.62  E-value=0.0016  Score=43.23  Aligned_cols=45  Identities=27%  Similarity=0.570  Sum_probs=34.1

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCcccc----------ccchhHHHHHHhhhhc
Q 036787           12 MKKGAWSKEEDDKLGAYILKYGHWNWAQL----------PKSGKSCRLRWMNYLR   56 (85)
Q Consensus        12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~~I----------ar~~~qcr~rw~~~L~   56 (85)
                      .+...||.|||.+|...|-.|+...=.++          .|++.+|..||+.++.
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs~vr   57 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRWNSVVR   57 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHHHHHHH
Confidence            46778999999999988888853322222          2799999999977664

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.58  E-value=0.0016  Score=37.20  Aligned_cols=42  Identities=26%  Similarity=0.441  Sum_probs=33.7

Q ss_pred             cCCCCHHHHHHHHHHHHHh-----CC-----------CCccccc----------cchhHHHHHHhhhh
Q 036787           14 KGAWSKEEDDKLGAYILKY-----GH-----------WNWAQLP----------KSGKSCRLRWMNYL   55 (85)
Q Consensus        14 kg~Wt~eED~~L~~~v~~~-----g~-----------~~W~~Ia----------r~~~qcr~rw~~~L   55 (85)
                      +..||++|...|+.+|..|     +.           .-|..|+          |+..|++..|.+..
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            5689999999999999987     20           1377776          58999999998865

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.12  E-value=0.0046  Score=44.97  Aligned_cols=45  Identities=13%  Similarity=0.382  Sum_probs=40.0

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhc
Q 036787           12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLR   56 (85)
Q Consensus        12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~   56 (85)
                      |---.|+.+|+-+|++..+..|-+||..||     |+...|+++|..++.
T Consensus        61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            344569999999999999999999999998     699999999999765

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=94.94  E-value=0.047  Score=29.96  Aligned_cols=24  Identities=17%  Similarity=0.264  Sum_probs=21.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-CCC
Q 036787           61 HGNYTKEEEDTIIKTRQQHGN-KIM   84 (85)
Q Consensus        61 ~~~wt~eEd~~L~~~~~~~g~-~W~   84 (85)
                      +-.||+||....++++..+|. .|+
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a   27 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWA   27 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCccc
Confidence            568999999999999999997 783

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=94.85  E-value=0.045  Score=34.29  Aligned_cols=31  Identities=39%  Similarity=0.594  Sum_probs=25.7

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCC---CCccccc
Q 036787           11 GMKKGAWSKEEDDKLGAYILKYGH---WNWAQLP   41 (85)
Q Consensus        11 ~~~kg~Wt~eED~~L~~~v~~~g~---~~W~~Ia   41 (85)
                      +-++..||.+||.-|+-++..||-   +.|..|-
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik   79 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIK   79 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHH
Confidence            566789999999999999999998   7888875

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=93.65  E-value=0.07  Score=30.05  Aligned_cols=19  Identities=11%  Similarity=0.410  Sum_probs=12.8

Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q 036787           61 HGNYTKEEEDTIIKTRQQH   79 (85)
Q Consensus        61 ~~~wt~eEd~~L~~~~~~~   79 (85)
                      +.+||.+||+.|+..|..+
T Consensus         2 R~~fT~edD~~l~~~v~~~   20 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKEN   20 (65)
T ss_dssp             -----HHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            5689999999999999765

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=92.22  E-value=0.35  Score=28.14  Aligned_cols=39  Identities=15%  Similarity=0.445  Sum_probs=28.1

Q ss_pred             CCCHHHHHHHHHHHHHh-------CCCC-----cccccc----------chhHHHHHHhhh
Q 036787           16 AWSKEEDDKLGAYILKY-------GHWN-----WAQLPK----------SGKSCRLRWMNY   54 (85)
Q Consensus        16 ~Wt~eED~~L~~~v~~~-------g~~~-----W~~Iar----------~~~qcr~rw~~~   54 (85)
                      .||+++++.|++++...       +.+.     |..|+.          +..||+.||...
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l   61 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL   61 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence            59999999999988654       1223     555542          888999988665

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=92.19  E-value=0.18  Score=36.32  Aligned_cols=41  Identities=24%  Similarity=0.323  Sum_probs=33.5

Q ss_pred             CCCCHHHHHHHHHHHHHh---------CCCCccccc---------cchhHHHHHHhhhh
Q 036787           15 GAWSKEEDDKLGAYILKY---------GHWNWAQLP---------KSGKSCRLRWMNYL   55 (85)
Q Consensus        15 g~Wt~eED~~L~~~v~~~---------g~~~W~~Ia---------r~~~qcr~rw~~~L   55 (85)
                      ..|+.+|-..|+.+....         ....|..||         ||+.||+.+|.+..
T Consensus        55 ~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~  113 (345)
T KOG4282|consen   55 PRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK  113 (345)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            679999999999988643         113599998         49999999999875

>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []

Probab=91.99  E-value=0.19  Score=29.52  Aligned_cols=16  Identities=31%  Similarity=0.671  Sum_probs=9.3

Q ss_pred             CCCCcCCCCHHHHHHH
Q 036787           10 RGMKKGAWSKEEDDKL   25 (85)
Q Consensus        10 ~~~~kg~Wt~eED~~L   25 (85)
                      |.-..|-||+++|+.|
T Consensus        43 P~n~~GiWT~eDD~~L   58 (87)
T PF11626_consen   43 PDNMPGIWTPEDDEML   58 (87)
T ss_dssp             -TT-TT---HHHHHHH
T ss_pred             CCCCCCCcCHHHHHHH
Confidence            3345889999999999

The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=91.56  E-value=0.28  Score=30.69  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=19.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC
Q 036787           58 DIKHGNYTKEEEDTIIKTRQQHGN   81 (85)
Q Consensus        58 ~~~~~~wt~eEd~~L~~~~~~~g~   81 (85)
                      ..+...+|++||..|+-++.+||=
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~   69 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGY   69 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTT
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCC
Confidence            556789999999999999999995

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=90.43  E-value=0.16  Score=38.89  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=22.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCC
Q 036787           61 HGNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        61 ~~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      ...||++|+.+|++.+..||-.|.
T Consensus       253 ~~~WT~qE~lLLLE~ie~y~ddW~  276 (506)
T KOG1279|consen  253 RPNWTEQETLLLLEAIEMYGDDWN  276 (506)
T ss_pred             CCCccHHHHHHHHHHHHHhcccHH
Confidence            468999999999999999999994

>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit

Probab=88.16  E-value=0.78  Score=29.93  Aligned_cols=42  Identities=19%  Similarity=0.207  Sum_probs=34.3

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCcccccc---------chhHHHHHHhhh
Q 036787           12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLPK---------SGKSCRLRWMNY   54 (85)
Q Consensus        12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~~Iar---------~~~qcr~rw~~~   54 (85)
                      .+..+-|+.|-.-|..||++|| .+...++|         |+.||+.+...+
T Consensus       112 ~~~~~ls~~e~~~i~~Li~KhG-dDy~aMarD~KLN~~Q~T~~qlrrki~~~  162 (164)
T PF09420_consen  112 KKPRRLSEREIEYIEYLIEKHG-DDYKAMARDRKLNYMQHTPGQLRRKIRKY  162 (164)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHC-ccHHHHhccCCCCcccCCHHHHHHHHHHh
Confidence            3455788999999999999999 69999995         777887776655

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=87.87  E-value=0.44  Score=35.88  Aligned_cols=27  Identities=19%  Similarity=0.288  Sum_probs=23.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CCCC
Q 036787           58 DIKHGNYTKEEEDTIIKTRQQHG-NKIM   84 (85)
Q Consensus        58 ~~~~~~wt~eEd~~L~~~~~~~g-~~W~   84 (85)
                      .+-...||.+|+.+|++++..|| ++|.
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~   96 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQ   96 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHH
Confidence            45567899999999999999999 6773

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=87.22  E-value=0.32  Score=37.13  Aligned_cols=26  Identities=15%  Similarity=0.268  Sum_probs=22.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCC
Q 036787           60 KHGNYTKEEEDTIIKTRQQHGNKIMK   85 (85)
Q Consensus        60 ~~~~wt~eEd~~L~~~~~~~g~~W~k   85 (85)
                      ...+||.+|..+|++.++.||..|.|
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygDdW~k  303 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGDDWDK  303 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhhhHHH
Confidence            34599999999999999999999953

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=85.75  E-value=1.2  Score=25.10  Aligned_cols=20  Identities=20%  Similarity=0.551  Sum_probs=17.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhC
Q 036787           61 HGNYTKEEEDTIIKTRQQHG   80 (85)
Q Consensus        61 ~~~wt~eEd~~L~~~~~~~g   80 (85)
                      ...||.+|...|++++.+|.
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~   21 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHK   21 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhH
Confidence            46799999999999998863

>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B

Probab=84.11  E-value=1.2  Score=22.70  Aligned_cols=34  Identities=26%  Similarity=0.325  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHhCCCCcccccc----chhHHHHHHhh
Q 036787           20 EEDDKLGAYILKYGHWNWAQLPK----SGKSCRLRWMN   53 (85)
Q Consensus        20 eED~~L~~~v~~~g~~~W~~Iar----~~~qcr~rw~~   53 (85)
                      +=|..|+.+....+...+..||+    |+..|..|...
T Consensus         3 ~~D~~Il~~Lq~d~r~s~~~la~~lglS~~~v~~Ri~r   40 (42)
T PF13404_consen    3 ELDRKILRLLQEDGRRSYAELAEELGLSESTVRRRIRR   40 (42)
T ss_dssp             HHHHHHHHHHHH-TTS-HHHHHHHHTS-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCccHHHHHHHHCcCHHHHHHHHHH
Confidence            34788999999999889999996    99999998764

...

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=83.27  E-value=1.8  Score=32.46  Aligned_cols=44  Identities=18%  Similarity=0.359  Sum_probs=37.0

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----------cchhHHHHHHhhhh
Q 036787           11 GMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----------KSGKSCRLRWMNYL   55 (85)
Q Consensus        11 ~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----------r~~~qcr~rw~~~L   55 (85)
                      ++.-..||.+|-+.|.+++..|. -.|..|+           ||-...++||..+.
T Consensus       127 ~l~dn~WskeETD~LF~lck~fD-LRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~  181 (445)
T KOG2656|consen  127 HLNDNSWSKEETDYLFDLCKRFD-LRFFVIADRYDNQQYKKSRTVEDLKERYYSVC  181 (445)
T ss_pred             hhccccccHHHHHHHHHHHHhcC-eeEEEEeeccchhhccccccHHHHHHHHHHHH
Confidence            45567899999999999999998 5888887           58889999998753

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=81.56  E-value=1.7  Score=32.64  Aligned_cols=59  Identities=15%  Similarity=0.369  Sum_probs=45.5

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhh--hcC-----CC-CCCCCCHHHHHHH
Q 036787           13 KKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNY--LRP-----DI-KHGNYTKEEEDTI   72 (85)
Q Consensus        13 ~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~--L~~-----~~-~~~~wt~eEd~~L   72 (85)
                      .--+||.+|-++.+++....| .++..||     |+.+|++..|.+-  .+|     .+ .+.|+..+|-..+
T Consensus       364 ~~~~Ws~~e~ekFYKALs~wG-tdF~LIs~lfP~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY~k~  435 (507)
T COG5118         364 GALRWSKKEIEKFYKALSIWG-TDFSLISSLFPNRERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEYNKL  435 (507)
T ss_pred             CCCcccHHHHHHHHHHHHHhc-chHHHHHHhcCchhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHHhhH
Confidence            345799999999999999999 5999999     7999999998773  233     22 2467777776543

>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional

Probab=81.34  E-value=2  Score=27.38  Aligned_cols=41  Identities=17%  Similarity=0.187  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHhCCCCcccccc----chhHHHHHHhhhhcCCC
Q 036787           19 KEEDDKLGAYILKYGHWNWAQLPK----SGKSCRLRWMNYLRPDI   59 (85)
Q Consensus        19 ~eED~~L~~~v~~~g~~~W~~Iar----~~~qcr~rw~~~L~~~~   59 (85)
                      .+-|.+|+.+.+..|.-.|..||+    |+..|+.|+....+.++
T Consensus         8 D~~D~~Il~~Lq~d~R~s~~eiA~~lglS~~tV~~Ri~rL~~~Gv   52 (153)
T PRK11179          8 DNLDRGILEALMENARTPYAELAKQFGVSPGTIHVRVEKMKQAGI   52 (153)
T ss_pred             CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence            357899999999999889999996    99999999998876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	85
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		2e-09
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		3e-09
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		7e-09
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		7e-09
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		8e-09
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		1e-06
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		3e-06
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		4e-05
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		7e-05
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		8e-05
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		4e-04

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 5/76 (6%)
Query: 12  MKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS-----GKSCRLRWMNYLRPDIKHGNYTK 66
           + KG W+KEED ++  ++ KYG   W+ + K      GK CR RW N+L P++K  ++T+
Sbjct: 25  LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 84
Query: 67  EEEDTIIKTRQQHGNK 82
           EE+  I +  ++ GN+
Sbjct: 85  EEDRIIYQAHKRLGNR 100

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS-----GKSCRLRWMNYLRPDIKHGNYTK 66
          + KG W+KEED K+   + KYG   W  + K      GK CR RW N+L P++K  ++T+
Sbjct: 5  LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTE 64
Query: 67 EEEDTIIKTRQQHGNK 82
          EE+  I +  +  GN+
Sbjct: 65 EEDRIIFEAHKVLGNR 80

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 14 KGAWSKEEDDKLGAYILKYGHWNWAQLPKS-----GKSCRLRWMNYLRPDIKHGNYTKEE 68
          KG W+KEED ++   + KYG   W+ + K      GK CR RW N+L P++K  ++T+EE
Sbjct: 4  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 63
Query: 69 EDTIIKTRQQHGNK 82
          +  I +  ++ GN+
Sbjct: 64 DRIIYQAHKRLGNR 77

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 5/76 (6%)
Query: 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS-----GKSCRLRWMNYLRPDIKHGNYTK 66
          + KG W+KEED ++   + KYG   W+ + K      GK CR RW N+L P++K  ++T+
Sbjct: 2  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 67 EEEDTIIKTRQQHGNK 82
          EE+  I +  ++ GN+
Sbjct: 62 EEDRIIYQAHKRLGNR 77

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 14  KGAWSKEEDDKLGAYILKYGHWNWAQLPKS-----GKSCRLRWMNYLRPDIKHGNYTKEE 68
           KG W+KEED ++   + KYG   W+ + K      GK CR RW N+L P++K  ++T+EE
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 117
Query: 69  EDTIIKTRQQHGNK 82
           +  I +  ++ GN+
Sbjct: 118 DRIIYQAHKRLGNR 131

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 14 KGAWSKEEDDKLGAYILKYGHWNWAQ----LP-KSGKSCRLRWMNYLRPDIKHGNYTKEE 68
          KG +++ EDD +  Y+ + G  NW +    LP +S K CR RW N+L P +    +T EE
Sbjct: 2  KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEE 61
Query: 69 EDTIIKTRQQHGNK 82
          ++TI +   + G+K
Sbjct: 62 DETIFRNYLKLGSK 75

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 10 RGMKKGAWSKEEDDKLGAYILKYGHWNW----AQLP-KSGKSCRLRWMNYLRPDIKHGNY 64
          +  KK  ++ EED+ L   + ++G  +W    A  P ++ + CR RW NYL P I H  +
Sbjct: 7  KAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPW 65
Query: 65 TKEEEDTIIKTRQQHGNK 82
          T EE+  +++  Q++G +
Sbjct: 66 TAEEDALLVQKIQEYGRQ 83

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS-----GKSCRLRWMNYLRPD 58
          + KG W+KEED +L   + KYG   W+ + K      GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS-----GKSCRLRWMNYLRPD 58
          + KG W+KEED ++   + KYG   W+ + K      GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLPKS-----GKSCRLRWMNYLRPD 58
          + KG W+KEED ++   + KYG   W+ + K      GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 14 KGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEE 68
          K  +++EED KL   +++YG  +W ++      ++ + CR RW NY+ P ++   ++ EE
Sbjct: 1  KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60
Query: 69 EDTIIKTRQQHG---NKIMK 85
          +  + +   ++G   NKI K
Sbjct: 61 DMLLDQKYAEYGPKWNKISK 80

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	85
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	4e-34
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	5e-34
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	2e-10
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	5e-33
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	2e-28
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	6e-28
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-21
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-04
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	1e-27
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	1e-21
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-21
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	1e-16
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	6e-13
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	5e-06
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	2e-05
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	1e-04
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	3e-04
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	7e-04

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  111 bits (280), Expect = 4e-34
 Identities = 28/76 (36%), Positives = 46/76 (60%), Gaps = 5/76 (6%)

Query: 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPDIKHGNYTK 66
          + KG W+KEED ++   + KYG   W+ + K      GK CR RW N+L P++K  ++T+
Sbjct: 2  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTE 61

Query: 67 EEEDTIIKTRQQHGNK 82
          EE+  I +  ++ GN+
Sbjct: 62 EEDRIIYQAHKRLGNR 77

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  111 bits (281), Expect = 5e-34
 Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 5/77 (6%)

Query: 11  GMKKGAWSKEEDDKLGAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPDIKHGNYT 65
            + KG W+KEED ++  ++ KYG   W+ + K      GK CR RW N+L P++K  ++T
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 83

Query: 66  KEEEDTIIKTRQQHGNK 82
           +EE+  I +  ++ GN+
Sbjct: 84  EEEDRIIYQAHKRLGNR 100

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score = 52.2 bits (126), Expect = 2e-10
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 42 KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNK 82
          ++   C+ RW   L P++  G +TKEE+  +I+  Q++G K
Sbjct: 8  RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPK 48

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  109 bits (275), Expect = 5e-33
 Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 5/74 (6%)

Query: 14 KGAWSKEEDDKLGAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPDIKHGNYTKEE 68
          KG +++ EDD +  Y+ + G  NW ++       S K CR RW N+L P +    +T EE
Sbjct: 2  KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEE 61

Query: 69 EDTIIKTRQQHGNK 82
          ++TI +   + G+K
Sbjct: 62 DETIFRNYLKLGSK 75

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score = 98.1 bits (245), Expect = 2e-28
 Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 6/83 (7%)

Query: 5  PPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPDI 59
             + +  KK  ++ EED+ L   + ++G  +W  +       + + CR RW NYL P I
Sbjct: 2  VQVNLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSI 60

Query: 60 KHGNYTKEEEDTIIKTRQQHGNK 82
           H  +T EE+  +++  Q++G +
Sbjct: 61 SHTPWTAEEDALLVQKIQEYGRQ 83

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 97.7 bits (244), Expect = 6e-28
 Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 5/77 (6%)

Query: 11  GMKKGAWSKEEDDKLGAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPDIKHGNYT 65
            + KG W+KEED ++   + KYG   W+ + K      GK CR RW N+L P++K  ++T
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 114

Query: 66  KEEEDTIIKTRQQHGNK 82
           +EE+  I +  ++ GN+
Sbjct: 115 EEEDRIIYQAHKRLGNR 131

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 81.2 bits (201), Expect = 2e-21
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 5/77 (6%)

Query: 11 GMKKGAWSKEEDDKLGAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPDIKHGNYT 65
           + K  W++EED+KL   + + G  +W  +       +   C+ RW   L P++  G +T
Sbjct: 3  HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWT 62

Query: 66 KEEEDTIIKTRQQHGNK 82
          KEE+  +IK  Q++G K
Sbjct: 63 KEEDQRVIKLVQKYGPK 79

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 13  KKGAWSKEEDDKLGAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPDI 59
           KK +W++EED  +     + G+  WA++ K     +  + +  W + +R  +
Sbjct: 109 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score = 95.3 bits (238), Expect = 1e-27
 Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 5/74 (6%)

Query: 14 KGAWSKEEDDKLGAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPDIKHGNYTKEE 68
          K  +++EED KL   +++YG  +W ++ +     + + CR RW NY+ P ++   ++ EE
Sbjct: 1  KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60

Query: 69 EDTIIKTRQQHGNK 82
          +  + +   ++G K
Sbjct: 61 DMLLDQKYAEYGPK 74

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 78.3 bits (194), Expect = 1e-21
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 5/52 (9%)

Query: 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPD 58
          + KG W+KEED +L   + KYG   W+ + K      GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 78.9 bits (195), Expect = 2e-21
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 9  GRGMKKGAWSKEEDDKLGAYILKYGHWNWAQ----LP-KSGKSCRLRWMNYLRPDIKHGN 63
          G   K G W   ED+ L A ++KYG   W++    L  KS K C+ RW  +L P IK   
Sbjct: 4  GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTE 63

Query: 64 YTKEEE 69
          ++    
Sbjct: 64 WSGPSS 69

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 65.7 bits (161), Expect = 1e-16
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 5/52 (9%)

Query: 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPD 58
          + K  W++EED+KL   + + G  +W  +       +   C+ RW   L P+
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 56.5 bits (137), Expect = 6e-13
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 10 RGMKKGAWSKEEDDKLGAYILKYGHWNWA----QLP-KSGKSCRLRWMNYLRPDIK 60
              K  W+ EED++L A + ++G  +W       P ++ + C+ RW+  L     
Sbjct: 4  GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 39.4 bits (92), Expect = 5e-06
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 8  DGRGMKKGAWSKEEDDKLGAYILKYGHWNW---AQLP-KSGKSCRLRWMNYLRPDIKHGN 63
           G   KK  WS+EE++KL           W   A +  ++   C   +   L    +  +
Sbjct: 3  SGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDS 61

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 37.7 bits (88), Expect = 2e-05
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 13 KKGAWSKEEDDKLGAYILKYGHWNWAQLPK-------SGKSCRLRWMNYLR 56
          K+ AW  EED  L + + KYG  NW+++         +    + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 37.7 bits (86), Expect = 1e-04
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 13/81 (16%)

Query: 13 KKGAWSKEEDDKLGAYILK-----YGHWNWAQLPK-----SGKSCRLRWMNYLRPDIKHG 62
           K +++ EED+ +   + K       H  + ++       +G S R R+  YL   +++ 
Sbjct: 7  NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV 66

Query: 63 NYTKEEEDTIIKTRQQHGNKI 83
           Y  ++   ++  R   GN I
Sbjct: 67 -YEVDKFGKLV--RDDDGNLI 84

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 34.6 bits (80), Expect = 3e-04
 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 5/48 (10%)

Query: 13 KKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYL 55
             +W+ +E+  L   ++  G  NW  +      K+ + C   +M Y 
Sbjct: 7  GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYF 54

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 33.4 bits (77), Expect = 7e-04
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 13 KKGAWSKEEDDKLGAYILKYGHWNWAQLPK-------SGKSCRLRWMNYLRPDI 59
          KK  W+ EE + + A + KYG  NWA + K       +    + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	85
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.96
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.96
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.96
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.96
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.96
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.94
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.93
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.92
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.88
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.84
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.83
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.81
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.8
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.8
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.79
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.78
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.76
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.72
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.7
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.7
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.7
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.68
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.68
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.65
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.65
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.62
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.55
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.3
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.53
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.5
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.49
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.47
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.46
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.38
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.17
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.13
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.02
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.97
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.83
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	98.82
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	98.77
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.73
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	98.65
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	98.65
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	98.64
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	98.63
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	98.61
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	98.6
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.0
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.57
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	98.49
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	98.48
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.42
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.34
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	98.34
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	98.2
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	98.18
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.18
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	98.17
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.13
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	98.02
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.85
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	97.84
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.82
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.74
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.55
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.62
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.44
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	97.43
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	97.26
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	97.2
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.19
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.15
2cjj_A	93	Radialis; plant development, DNA-binding protein,	97.09
2crg_A	70	Metastasis associated protein MTA3; transcription	97.04
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.0
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.79
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	96.65
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	96.52
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	96.3
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	96.01
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	96.01
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	95.88
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	94.1
2crg_A	70	Metastasis associated protein MTA3; transcription	92.53
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	90.89
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	90.64
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	90.56
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	89.82
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	89.07
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	86.88
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	86.54
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	85.54
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	85.22
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	83.02
2rq5_A	121	Protein jumonji; developmental protein, nucleus, r	80.82

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.96  E-value=3.6e-30  Score=161.55  Aligned_cols=82  Identities=34%  Similarity=0.693  Sum_probs=73.9

Q ss_pred             CCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 036787            3 RAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQ   77 (85)
Q Consensus         3 r~~~~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~   77 (85)
                      |+..+.+|.+++|+||+|||++|+.+|..||.++|..||     ||+.||++||.++|+|.+++++||+|||.+|++++.
T Consensus        16 Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~   95 (128)
T 1h8a_C           16 RWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK   95 (128)
T ss_dssp             ------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHH
T ss_pred             HHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHH
Confidence            455667899999999999999999999999987899998     799999999999999999999999999999999999


Q ss_pred             HhCCCCC
Q 036787           78 QHGNKIM   84 (85)
Q Consensus        78 ~~g~~W~   84 (85)
                      +||++|+
T Consensus        96 ~~G~~W~  102 (128)
T 1h8a_C           96 RLGNRWA  102 (128)
T ss_dssp             HHCSCHH
T ss_pred             HHCcCHH
Confidence            9999995

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.96  E-value=5.1e-30  Score=155.95  Aligned_cols=74  Identities=36%  Similarity=0.776  Sum_probs=71.1

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787           11 GMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        11 ~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      .+++|+||+|||++|+.+|..||.++|..||     ||+.||++||.++|+|.+++++||++||.+|++++.+||++|+
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            3789999999999999999999987999998     6999999999999999999999999999999999999999995

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.96  E-value=4.8e-30  Score=156.86  Aligned_cols=71  Identities=28%  Similarity=0.628  Sum_probs=68.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787           14 KGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        14 kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      ||+||+|||++|+.+|..||.++|..||     ||+.||++||.++|+|.+++++||++||.+|+++|.+||++|+
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~   76 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWN   76 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHH
Confidence            6899999999999999999988999998     7999999999999999999999999999999999999999995

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.96  E-value=2.3e-29  Score=158.56  Aligned_cols=72  Identities=35%  Similarity=0.687  Sum_probs=69.6

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787           13 KKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        13 ~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      .||+||+|||++|+.+|..||.++|..||     ||+.||++||.++|+|.+++++||++||.+|+++|.+||++|+
T Consensus         1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   77 (131)
T 3zqc_A            1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWS   77 (131)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHH
Confidence            37999999999999999999988999999     6999999999999999999999999999999999999999995

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.96  E-value=1.9e-29  Score=158.09  Aligned_cols=76  Identities=30%  Similarity=0.634  Sum_probs=72.0

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 036787            8 DGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNK   82 (85)
Q Consensus         8 ~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~   82 (85)
                      .++..++|+||+|||++|+.+|..||. +|..||     |++.||++||.++|+|.+++++||++||.+|+++|.+||++
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~   83 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ   83 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence            356789999999999999999999996 999999     79999999999999999999999999999999999999999


Q ss_pred             CC
Q 036787           83 IM   84 (85)
Q Consensus        83 W~   84 (85)
                      |+
T Consensus        84 W~   85 (126)
T 3osg_A           84 WA   85 (126)
T ss_dssp             HH
T ss_pred             HH
Confidence            95

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.94  E-value=6.1e-28  Score=155.97  Aligned_cols=79  Identities=34%  Similarity=0.701  Sum_probs=75.4

Q ss_pred             CCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhC
Q 036787            6 PYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHG   80 (85)
Q Consensus         6 ~~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g   80 (85)
                      .+.+|.+++|+||+|||++|+.+|..||.++|..||     ||+.||++||.++|+|.+++++||++||.+|++++.+||
T Consensus        50 ~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g  129 (159)
T 1h89_C           50 KVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG  129 (159)
T ss_dssp             TTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             HccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence            357889999999999999999999999977899998     799999999999999999999999999999999999999


Q ss_pred             CCCC
Q 036787           81 NKIM   84 (85)
Q Consensus        81 ~~W~   84 (85)
                      ++|+
T Consensus       130 ~~W~  133 (159)
T 1h89_C          130 NRWA  133 (159)
T ss_dssp             SCHH
T ss_pred             CCHH
Confidence            9995

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.93  E-value=1.1e-26  Score=132.66  Aligned_cols=62  Identities=35%  Similarity=0.807  Sum_probs=59.2

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHH
Q 036787            8 DGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEE   69 (85)
Q Consensus         8 ~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd   69 (85)
                      ..|.+++|+||+|||++|+.+|..||.++|..||     ||+.||++||.++|+|.+++++||++||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            4678999999999999999999999988999999     7999999999999999999999999997

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.92  E-value=1e-26  Score=150.21  Aligned_cols=74  Identities=31%  Similarity=0.664  Sum_probs=37.5

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCC-CCC
Q 036787           11 GMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGN-KIM   84 (85)
Q Consensus        11 ~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~-~W~   84 (85)
                      ++++++||+|||++|+.+|..||.++|..||     |++.||++||.++|+|.+++++||++||.+|+++|..||+ +|+
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~   82 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS   82 (159)
T ss_dssp             ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHH
Confidence            3789999999999999999999988999999     6999999999999999999999999999999999999996 585

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.88  E-value=4e-23  Score=128.79  Aligned_cols=78  Identities=13%  Similarity=0.244  Sum_probs=73.2

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc---------cchhHHHHHHhhhhc-----CCCCCC-CCCHHHHHHH
Q 036787            8 DGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP---------KSGKSCRLRWMNYLR-----PDIKHG-NYTKEEEDTI   72 (85)
Q Consensus         8 ~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia---------r~~~qcr~rw~~~L~-----~~~~~~-~wt~eEd~~L   72 (85)
                      .++..++++||+|||+.|+.+|++||.++|+.|+         ||+.||++||+++|.     |.++++ +|+++|+.+|
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv   90 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV   90 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence            4578899999999999999999999988999986         699999999999998     999998 9999999999


Q ss_pred             HHHHHHhCCCCCC
Q 036787           73 IKTRQQHGNKIMK   85 (85)
Q Consensus        73 ~~~~~~~g~~W~k   85 (85)
                      +.++..+||+|+|
T Consensus        91 ~~~h~~~gn~~~~  103 (121)
T 2juh_A           91 LAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHccchhc
Confidence            9999999999986

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.84  E-value=4.1e-21  Score=119.84  Aligned_cols=76  Identities=13%  Similarity=0.269  Sum_probs=69.8

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc---------cchhHHHHHHhhhh-----cCCCCCCCCCHHH-HHHHH
Q 036787            9 GRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP---------KSGKSCRLRWMNYL-----RPDIKHGNYTKEE-EDTII   73 (85)
Q Consensus         9 ~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia---------r~~~qcr~rw~~~L-----~~~~~~~~wt~eE-d~~L~   73 (85)
                      +...++++||+|||+.|+.+|++||.++|..|+         ||+.||++||+|++     +|.++++.|+++| +.+|+
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~  105 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL  105 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence            345679999999999999999999988999986         79999999999999     8999999999999 89999


Q ss_pred             HHHHHhCCCCC
Q 036787           74 KTRQQHGNKIM   84 (85)
Q Consensus        74 ~~~~~~g~~W~   84 (85)
                      .++..+||+=+
T Consensus       106 ~~h~~~g~~~~  116 (122)
T 2roh_A          106 AAQAYWSVDSS  116 (122)
T ss_dssp             HHHHHHHSSCS
T ss_pred             HHHHHHhhHHh
Confidence            99999999743

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.83  E-value=5.5e-21  Score=105.89  Aligned_cols=52  Identities=27%  Similarity=0.671  Sum_probs=49.0

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCC
Q 036787            9 GRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIK   60 (85)
Q Consensus         9 ~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~   60 (85)
                      +|.+++++||+|||++|+++|..||.++|..||     ||+.||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            578999999999999999999999977999998     7999999999999999875

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.81  E-value=1.5e-20  Score=101.46  Aligned_cols=47  Identities=45%  Similarity=0.950  Sum_probs=44.2

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCC
Q 036787           12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPD   58 (85)
Q Consensus        12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~   58 (85)
                      +++|+||+|||++|+++|..||..+|..||     ||+.||++||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            579999999999999999999977899998     69999999999999984

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.80  E-value=2.9e-20  Score=100.25  Aligned_cols=47  Identities=30%  Similarity=0.760  Sum_probs=42.9

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCC
Q 036787           12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPD   58 (85)
Q Consensus        12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~   58 (85)
                      +++|+||+|||++|+.+|..||.++|..||     ||+.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            578999999999999999999977999998     69999999999999984

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.80  E-value=4.9e-20  Score=104.67  Aligned_cols=58  Identities=26%  Similarity=0.483  Sum_probs=53.0

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-------cchhHHHHHHhhhhcCCCCCCCCC
Q 036787            8 DGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-------KSGKSCRLRWMNYLRPDIKHGNYT   65 (85)
Q Consensus         8 ~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-------r~~~qcr~rw~~~L~~~~~~~~wt   65 (85)
                      .++..++++||+|||++|+.+|..||.++|..||       ||+.||++||.++|+|.+.+++.+
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            4577899999999999999999999988999987       799999999999999999987654

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.79  E-value=8.3e-20  Score=102.65  Aligned_cols=50  Identities=30%  Similarity=0.529  Sum_probs=45.2

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccc-------cchhHHHHHHhhhhcCCCC
Q 036787           11 GMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-------KSGKSCRLRWMNYLRPDIK   60 (85)
Q Consensus        11 ~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-------r~~~qcr~rw~~~L~~~~~   60 (85)
                      ..++++||+|||++|+.+|.+||.++|..||       ||+.||++||.+++.|.++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            4578999999999999999999988999997       6999999999999998874

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=7.7e-20  Score=103.00  Aligned_cols=56  Identities=21%  Similarity=0.399  Sum_probs=51.4

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc----cchhHHHHHHhhhhcCCCCCCC
Q 036787            7 YDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP----KSGKSCRLRWMNYLRPDIKHGN   63 (85)
Q Consensus         7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia----r~~~qcr~rw~~~L~~~~~~~~   63 (85)
                      +++|.+++++||+|||++|+.++..+|. +|..||    ||+.||++||.++|+|.+++++
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHHHHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhcccCcCHHHHHHHHHHHhChHhcCCC
Confidence            5789999999999999999999999995 999998    7999999999999998776653

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.76  E-value=1e-18  Score=96.81  Aligned_cols=50  Identities=20%  Similarity=0.506  Sum_probs=46.5

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCC
Q 036787            9 GRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPD   58 (85)
Q Consensus         9 ~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~   58 (85)
                      .+.+.+++||+|||++|+++|..||.++|..||     ||+.||++||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence            467999999999999999999999988999999     79999999999999764

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.72  E-value=4.8e-18  Score=91.91  Aligned_cols=44  Identities=32%  Similarity=0.622  Sum_probs=41.1

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccc-------cchhHHHHHHhhhhc
Q 036787           13 KKGAWSKEEDDKLGAYILKYGHWNWAQLP-------KSGKSCRLRWMNYLR   56 (85)
Q Consensus        13 ~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-------r~~~qcr~rw~~~L~   56 (85)
                      ++|+||+|||++|+.+|..||.++|..||       ||+.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            57999999999999999999988999996       799999999999985

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=7.2e-18  Score=96.91  Aligned_cols=55  Identities=22%  Similarity=0.416  Sum_probs=50.1

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCC-----CCccccc-----cchhHHHHHHhhhhcCCCCCCC
Q 036787            9 GRGMKKGAWSKEEDDKLGAYILKYGH-----WNWAQLP-----KSGKSCRLRWMNYLRPDIKHGN   63 (85)
Q Consensus         9 ~~~~~kg~Wt~eED~~L~~~v~~~g~-----~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~   63 (85)
                      +|.+.+++||+|||++|+++|..||.     ++|..||     ||+.||++||+++|.+.++.+.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            67899999999999999999999996     6899999     7999999999999998776653

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.70  E-value=2.1e-17  Score=91.00  Aligned_cols=46  Identities=20%  Similarity=0.373  Sum_probs=42.2

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCCccccc------cchhHHHHHHhhhh
Q 036787           10 RGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP------KSGKSCRLRWMNYL   55 (85)
Q Consensus        10 ~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia------r~~~qcr~rw~~~L   55 (85)
                      ..+.+++||+|||++|+++|..||.++|..||      ||+.||++||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            45678999999999999999999988999998      69999999999975

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.70  E-value=1.2e-17  Score=95.40  Aligned_cols=54  Identities=17%  Similarity=0.386  Sum_probs=49.0

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCC
Q 036787            7 YDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKH   61 (85)
Q Consensus         7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~   61 (85)
                      +.+|.+++++||+|||++|+.+|..||. +|..||     ||+.||++||.++|.+.++.
T Consensus         2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            4578999999999999999999999995 999999     79999999999999876554

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.68  E-value=3.1e-17  Score=100.04  Aligned_cols=75  Identities=15%  Similarity=0.254  Sum_probs=64.0

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc---------cchhHHHHHHhhhh-----cCCCCCCCCCHHHHHH-
Q 036787            7 YDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP---------KSGKSCRLRWMNYL-----RPDIKHGNYTKEEEDT-   71 (85)
Q Consensus         7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia---------r~~~qcr~rw~~~L-----~~~~~~~~wt~eEd~~-   71 (85)
                      ..+...++++||+|||+.|+.+|++||.++|..|+         ||+.+|++||++++     +|.++++.-+++|-.. 
T Consensus         6 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r   85 (105)
T 2aje_A            6 EDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR   85 (105)
T ss_dssp             ---CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence            35678899999999999999999999988999986         69999999999999     7899998888777665 


Q ss_pred             HHHHHHHhCC
Q 036787           72 IIKTRQQHGN   81 (85)
Q Consensus        72 L~~~~~~~g~   81 (85)
                      +++++..+|+
T Consensus        86 v~~~~~~~~~   95 (105)
T 2aje_A           86 VLNAHGYWTQ   95 (105)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888877764

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.68  E-value=3.5e-17  Score=94.04  Aligned_cols=56  Identities=23%  Similarity=0.361  Sum_probs=43.6

Q ss_pred             CCCCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc----cchhHHHHHHhhhhcCCCC
Q 036787            3 RAPPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP----KSGKSCRLRWMNYLRPDIK   60 (85)
Q Consensus         3 r~~~~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia----r~~~qcr~rw~~~L~~~~~   60 (85)
                      |.-.+.+|.+++|+||+|||++|++++.+|| .+|+.||    ||+.||++||.. |....+
T Consensus        12 ~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~lgRt~~q~knRw~~-L~~~~~   71 (73)
T 2llk_A           12 ENLYFQGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAALGRSASSVKDRCRL-MKDTCN   71 (73)
T ss_dssp             -------CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHHTSCHHHHHHHHHH-CSCCCS
T ss_pred             ceeeecCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHhCCCHHHHHHHHHH-HHHHcc
Confidence            4456788999999999999999999999999 5799998    799999999985 444443

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.65  E-value=3.3e-16  Score=91.95  Aligned_cols=64  Identities=13%  Similarity=0.276  Sum_probs=56.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccc---------cchhHHHHHHhhhh-----cCCCCC-CCCCHHHHHHHHHHHHH
Q 036787           15 GAWSKEEDDKLGAYILKYGHWNWAQLP---------KSGKSCRLRWMNYL-----RPDIKH-GNYTKEEEDTIIKTRQQ   78 (85)
Q Consensus        15 g~Wt~eED~~L~~~v~~~g~~~W~~Ia---------r~~~qcr~rw~~~L-----~~~~~~-~~wt~eEd~~L~~~~~~   78 (85)
                      .+||+|||+.|+.+|++||.++|+.|+         ||+.||++||+++|     +|.+++ .+..++....++.++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            489999999999999999988999986         69999999999988     676655 57888888888888764

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.65  E-value=7.1e-17  Score=101.29  Aligned_cols=60  Identities=25%  Similarity=0.462  Sum_probs=55.2

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCHH
Q 036787            7 YDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKE   67 (85)
Q Consensus         7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~e   67 (85)
                      +.+|.+++|+||+|||++|+.+|..|| .+|..||     ||+.||++||.++|.+.+..++|+.+
T Consensus        47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~  111 (131)
T 3zqc_A           47 HLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKE  111 (131)
T ss_dssp             HTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred             ccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCccc
Confidence            567899999999999999999999999 6999999     69999999999999999988887754

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.62  E-value=5.5e-16  Score=105.71  Aligned_cols=70  Identities=19%  Similarity=0.323  Sum_probs=60.2

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCC-----Cccccc-----cchhHHHHHHhhhhcCCCC------------------
Q 036787            9 GRGMKKGAWSKEEDDKLGAYILKYGHW-----NWAQLP-----KSGKSCRLRWMNYLRPDIK------------------   60 (85)
Q Consensus         9 ~~~~~kg~Wt~eED~~L~~~v~~~g~~-----~W~~Ia-----r~~~qcr~rw~~~L~~~~~------------------   60 (85)
                      .+.+++++||+|||++|+.+|.++|..     .|..||     ||+.|||+||..+|.+.++                  
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn   82 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   82 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence            456889999999999999999999853     299999     6999999999999999987                  


Q ss_pred             -----------CCCCCHHHHHHHHHHHHH
Q 036787           61 -----------HGNYTKEEEDTIIKTRQQ   78 (85)
Q Consensus        61 -----------~~~wt~eEd~~L~~~~~~   78 (85)
                                 +..||.+||-.|+..+.+
T Consensus        83 ~ikis~lp~siK~rftaeeDy~L~~~i~~  111 (246)
T 1ign_A           83 LIKTKVLPPSIKRKFSADEDYTLAIAVKK  111 (246)
T ss_dssp             BCEESSCCCCSCCCCCHHHHHHHHHHHHH
T ss_pred             ceeeeccCccccCccchhccHHHHHHHHH
Confidence                       789999999999999876

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.55  E-value=4.9e-15  Score=89.49  Aligned_cols=50  Identities=22%  Similarity=0.464  Sum_probs=45.9

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcC
Q 036787            7 YDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRP   57 (85)
Q Consensus         7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~   57 (85)
                      +.+|.+++|+||+|||++|+.+|..|| .+|..||     ||+.||++||..+|..
T Consensus        49 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~~~~  103 (105)
T 1gv2_A           49 HLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTMRR  103 (105)
T ss_dssp             TTCCCCCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCTTCCHHHHHHHHHHHTC-
T ss_pred             ccCCcccccCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            567899999999999999999999999 6999998     6999999999999865

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.30  E-value=5.6e-16  Score=91.86  Aligned_cols=52  Identities=21%  Similarity=0.453  Sum_probs=46.9

Q ss_pred             CCCCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcC
Q 036787            5 PPYDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRP   57 (85)
Q Consensus         5 ~~~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~   57 (85)
                      +....|.+.+|+||+|||++|+.+|..||. +|..||     ||+.||++||.++|..
T Consensus         7 ~~~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            7 HSSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR   63 (89)
Confidence            345678999999999999999999999995 899999     6999999999999863

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.53  E-value=8.6e-15  Score=85.11  Aligned_cols=46  Identities=15%  Similarity=0.383  Sum_probs=42.6

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhh
Q 036787            8 DGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNY   54 (85)
Q Consensus         8 ~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~   54 (85)
                      .+....+++||+|||.+|+++|..|| ++|..||     ||+.||+.||.++
T Consensus        12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            45567799999999999999999999 8999999     7999999999998

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.50  E-value=1.9e-14  Score=87.41  Aligned_cols=50  Identities=32%  Similarity=0.617  Sum_probs=46.0

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcC
Q 036787            7 YDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRP   57 (85)
Q Consensus         7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~   57 (85)
                      +++|.+++|+||+|||++|+.+|..|| .+|..||     ||+.||++||..++..
T Consensus        46 ~L~p~i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l~r~  100 (107)
T 2k9n_A           46 YINPALRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFLKNRSDNNIRNRWMMIARH  100 (107)
T ss_dssp             HSSSCCTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             HHcccccccccCHHHHHHHHHHHHHhC-cCHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence            467899999999999999999999999 5999999     6999999999998764

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.49  E-value=2.9e-14  Score=88.86  Aligned_cols=50  Identities=22%  Similarity=0.471  Sum_probs=46.3

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcC
Q 036787            7 YDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRP   57 (85)
Q Consensus         7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~   57 (85)
                      +.+|.+++|+||+|||++|+.++..|| .+|..||     ||+.||++||..+|..
T Consensus        72 ~l~p~~~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~r~~~~~~~  126 (128)
T 1h8a_C           72 HLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAVKNHWNSTMRR  126 (128)
T ss_dssp             TTCSSSCCSCCCHHHHHHHHHHHHHHC-SCHHHHGGGSTTCCHHHHHHHHHTTTTC
T ss_pred             hcccccccccCCHHHHHHHHHHHHHHC-cCHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence            567899999999999999999999999 6999999     6999999999998864

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.47  E-value=3.2e-14  Score=88.66  Aligned_cols=49  Identities=27%  Similarity=0.568  Sum_probs=45.4

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhc
Q 036787            7 YDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLR   56 (85)
Q Consensus         7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~   56 (85)
                      +.+|.+++|+||+|||++|+.+|..|| .+|..||     ||+.||++||..++.
T Consensus        55 ~l~p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l~~  108 (126)
T 3osg_A           55 YLAPSISHTPWTAEEDALLVQKIQEYG-RQWAIIAKFFPGRTDIHIKNRWVTISN  108 (126)
T ss_dssp             HTSTTSCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred             hcccccccccCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999999999 6999998     699999999999875

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.46  E-value=4.3e-14  Score=81.09  Aligned_cols=52  Identities=15%  Similarity=0.339  Sum_probs=45.5

Q ss_pred             CCCCCCCCCcCCCCHHHHHHHHHHHHHhC---CCCccccc-----cchhHHHHHHhhhhc
Q 036787            5 PPYDGRGMKKGAWSKEEDDKLGAYILKYG---HWNWAQLP-----KSGKSCRLRWMNYLR   56 (85)
Q Consensus         5 ~~~~~~~~~kg~Wt~eED~~L~~~v~~~g---~~~W~~Ia-----r~~~qcr~rw~~~L~   56 (85)
                      +....+.+.+++||++||.+|+.++..||   ...|..||     ||+.||+.||.+++.
T Consensus         9 ~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A            9 LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             ccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            34466778899999999999999999998   35899999     699999999998875

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.38  E-value=1.2e-13  Score=79.15  Aligned_cols=37  Identities=24%  Similarity=0.326  Sum_probs=27.5

Q ss_pred             HHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787           48 RLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        48 r~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      --||.++|+|.+++++||+|||++|++++.+||++|+
T Consensus        10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~   46 (73)
T 2llk_A           10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWA   46 (73)
T ss_dssp             ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHH
T ss_pred             CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHH
Confidence            3589999999999999999999999999999999996

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.17  E-value=1.4e-11  Score=73.42  Aligned_cols=43  Identities=14%  Similarity=0.368  Sum_probs=38.4

Q ss_pred             CcCCCCHHHHHHHHHHHHHhC---CCCccccc-----cchhHHHHHHhhhh
Q 036787           13 KKGAWSKEEDDKLGAYILKYG---HWNWAQLP-----KSGKSCRLRWMNYL   55 (85)
Q Consensus        13 ~kg~Wt~eED~~L~~~v~~~g---~~~W~~Ia-----r~~~qcr~rw~~~L   55 (85)
                      .+++||+|||.+|..++..||   ...|..||     ||..||+.||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            468999999999999999997   45799999     69999999999975

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.13  E-value=5e-11  Score=66.10  Aligned_cols=44  Identities=14%  Similarity=0.276  Sum_probs=40.3

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccc--------cchhHHHHHHhhhhc
Q 036787           12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP--------KSGKSCRLRWMNYLR   56 (85)
Q Consensus        12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia--------r~~~qcr~rw~~~L~   56 (85)
                      -.+.+||+|||+.|++.|++||. +|..|+        ||..++++||++...
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            36889999999999999999995 999998        699999999999864

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=8e-11  Score=65.73  Aligned_cols=32  Identities=13%  Similarity=0.180  Sum_probs=30.3

Q ss_pred             hhhcCCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787           53 NYLRPDIKHGNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        53 ~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      .+|+|.+++++||++||.+|++++..||++|+
T Consensus         1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~   32 (66)
T 2din_A            1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWR   32 (66)
T ss_dssp             CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHH
Confidence            37999999999999999999999999999995

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=1e-09  Score=60.53  Aligned_cols=48  Identities=17%  Similarity=0.255  Sum_probs=41.5

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhh
Q 036787            7 YDGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYL   55 (85)
Q Consensus         7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L   55 (85)
                      .++..-..++||+||++++..++..|| .+|..||     ||..||..+|....
T Consensus         5 ~~~~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            5 SSGDRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCCCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            345556778999999999999999999 6999999     69999999997653

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.83  E-value=3e-09  Score=60.59  Aligned_cols=48  Identities=13%  Similarity=0.268  Sum_probs=41.5

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCC---CCccccc----cchhHHHHHHhhhhcC
Q 036787           10 RGMKKGAWSKEEDDKLGAYILKYGH---WNWAQLP----KSGKSCRLRWMNYLRP   57 (85)
Q Consensus        10 ~~~~kg~Wt~eED~~L~~~v~~~g~---~~W~~Ia----r~~~qcr~rw~~~L~~   57 (85)
                      +....+.||.|||.+|..++..|+.   +.|..||    ||..||+.+|..+...
T Consensus         4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            4466789999999999999999973   4699999    7999999999987643

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.82  E-value=1.6e-09  Score=61.36  Aligned_cols=30  Identities=13%  Similarity=0.088  Sum_probs=28.4

Q ss_pred             hcCCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787           55 LRPDIKHGNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        55 L~~~~~~~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      ++|.+++++||+|||.+|++++..||++|+
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~   32 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWT   32 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHH
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHH
Confidence            578999999999999999999999999995

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=98.77  E-value=2.8e-09  Score=58.28  Aligned_cols=29  Identities=17%  Similarity=0.221  Sum_probs=26.7

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CCCC
Q 036787           56 RPDIKHGNYTKEEEDTIIKTRQQHG-NKIM   84 (85)
Q Consensus        56 ~~~~~~~~wt~eEd~~L~~~~~~~g-~~W~   84 (85)
                      +|.+++++||+|||.+|+++|.+|| ++|+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~   32 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWK   32 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHH
Confidence            5788999999999999999999999 5895

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.73  E-value=4.7e-09  Score=57.65  Aligned_cols=43  Identities=26%  Similarity=0.437  Sum_probs=37.0

Q ss_pred             cCCCCHHHHHHHHHHHHHh--------CCCCcccccc------chhHHHHHHhhhhc
Q 036787           14 KGAWSKEEDDKLGAYILKY--------GHWNWAQLPK------SGKSCRLRWMNYLR   56 (85)
Q Consensus        14 kg~Wt~eED~~L~~~v~~~--------g~~~W~~Iar------~~~qcr~rw~~~L~   56 (85)
                      +.+||+|||+.|+..|..+        |..-|..+++      |-.+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        4446888873      99999999999884

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=98.65  E-value=8.4e-09  Score=54.80  Aligned_cols=26  Identities=23%  Similarity=0.438  Sum_probs=22.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CCC
Q 036787           59 IKHGNYTKEEEDTIIKTRQQHGN-KIM   84 (85)
Q Consensus        59 ~~~~~wt~eEd~~L~~~~~~~g~-~W~   84 (85)
                      +++++||++||.+|+++|.+||+ +|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~   27 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWK   27 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHH
Confidence            46899999999999999999998 895

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=98.65  E-value=1e-08  Score=56.19  Aligned_cols=29  Identities=14%  Similarity=0.200  Sum_probs=26.4

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CCCC
Q 036787           56 RPDIKHGNYTKEEEDTIIKTRQQHG-NKIM   84 (85)
Q Consensus        56 ~~~~~~~~wt~eEd~~L~~~~~~~g-~~W~   84 (85)
                      .+.+.+++||++||.+|+++|..|| ++|.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~   32 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQ   32 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHH
Confidence            4678899999999999999999999 7895

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=98.64  E-value=1e-08  Score=54.81  Aligned_cols=25  Identities=16%  Similarity=0.209  Sum_probs=22.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CCCC
Q 036787           60 KHGNYTKEEEDTIIKTRQQHG-NKIM   84 (85)
Q Consensus        60 ~~~~wt~eEd~~L~~~~~~~g-~~W~   84 (85)
                      ++++||++||.+|+++|..|| ++|+
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~   26 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWS   26 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHH
Confidence            478999999999999999999 6895

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=98.63  E-value=1.4e-08  Score=56.92  Aligned_cols=31  Identities=13%  Similarity=0.085  Sum_probs=27.3

Q ss_pred             hhcCCCCCCCCCHHHHHHHHHHHHHhC-CCCC
Q 036787           54 YLRPDIKHGNYTKEEEDTIIKTRQQHG-NKIM   84 (85)
Q Consensus        54 ~L~~~~~~~~wt~eEd~~L~~~~~~~g-~~W~   84 (85)
                      ...+...+++||++||.+|+++|.+|| ++|+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~   34 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWS   34 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHH
Confidence            345677899999999999999999999 6895

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=98.61  E-value=1.5e-08  Score=53.89  Aligned_cols=26  Identities=35%  Similarity=0.530  Sum_probs=23.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CCC
Q 036787           59 IKHGNYTKEEEDTIIKTRQQHGN-KIM   84 (85)
Q Consensus        59 ~~~~~wt~eEd~~L~~~~~~~g~-~W~   84 (85)
                      +++++||++||.+|+++|.+||+ +|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~   27 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWS   27 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHH
Confidence            46899999999999999999997 585

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.60  E-value=1.9e-08  Score=56.53  Aligned_cols=29  Identities=17%  Similarity=0.237  Sum_probs=26.6

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CCCC
Q 036787           56 RPDIKHGNYTKEEEDTIIKTRQQHG-NKIM   84 (85)
Q Consensus        56 ~~~~~~~~wt~eEd~~L~~~~~~~g-~~W~   84 (85)
                      .|.+++++||++||.+|+++|.+|| ++|+
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~   33 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWS   33 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHH
Confidence            4678999999999999999999999 7885

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.00  E-value=6.4e-09  Score=61.25  Aligned_cols=33  Identities=24%  Similarity=0.242  Sum_probs=30.0

Q ss_pred             hhhcCCCCCCCCCHHHHHHHHHHHHHhCCCCCC
Q 036787           53 NYLRPDIKHGNYTKEEEDTIIKTRQQHGNKIMK   85 (85)
Q Consensus        53 ~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~W~k   85 (85)
                      ..++|.+++++||++||.+|++++..||++|++
T Consensus         8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~   40 (89)
T 2ltp_A            8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSA   40 (89)
Confidence            356789999999999999999999999999963

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.57  E-value=6.3e-08  Score=65.62  Aligned_cols=44  Identities=27%  Similarity=0.382  Sum_probs=40.2

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhc
Q 036787           12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLR   56 (85)
Q Consensus        12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~   56 (85)
                      ...++||.||+.+++.++..|| .+|..||     ||..||+.+|.++..
T Consensus       131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999 6999999     599999999998864

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=98.49  E-value=1.1e-07  Score=51.77  Aligned_cols=29  Identities=17%  Similarity=0.157  Sum_probs=25.6

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CCCC
Q 036787           56 RPDIKHGNYTKEEEDTIIKTRQQHG-NKIM   84 (85)
Q Consensus        56 ~~~~~~~~wt~eEd~~L~~~~~~~g-~~W~   84 (85)
                      +..+.+++||++||.+|+++|.+|| ++|.
T Consensus         4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~   33 (58)
T 2elk_A            4 GSSGFDENWGADEELLLIDACETLGLGNWA   33 (58)
T ss_dssp             CCCSCCCCCCHHHHHHHHHHHHHTTTTCHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHH
Confidence            3456789999999999999999999 7895

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=98.48  E-value=5e-08  Score=54.22  Aligned_cols=26  Identities=23%  Similarity=0.256  Sum_probs=23.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-CCC
Q 036787           59 IKHGNYTKEEEDTIIKTRQQHGN-KIM   84 (85)
Q Consensus        59 ~~~~~wt~eEd~~L~~~~~~~g~-~W~   84 (85)
                      .++++||+|||++|+++|.+||. +|+
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~   35 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWA   35 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchH
Confidence            46799999999999999999994 785

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.42  E-value=8.2e-08  Score=53.10  Aligned_cols=26  Identities=23%  Similarity=0.305  Sum_probs=24.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787           59 IKHGNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        59 ~~~~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      -++.+||+|||..|++.|.+||.+|+
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~   31 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWN   31 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHH
Confidence            36789999999999999999999995

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.34  E-value=3.4e-07  Score=52.19  Aligned_cols=43  Identities=21%  Similarity=0.473  Sum_probs=37.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC---CCccccc-----cchhHHHHHHhhhhc
Q 036787           14 KGAWSKEEDDKLGAYILKYGH---WNWAQLP-----KSGKSCRLRWMNYLR   56 (85)
Q Consensus        14 kg~Wt~eED~~L~~~v~~~g~---~~W~~Ia-----r~~~qcr~rw~~~L~   56 (85)
                      ...||.+|+.+|..++..|+.   +.|..||     ||..+|+.||..++.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            468999999999999999974   4699998     699999999998764

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.34  E-value=9.1e-08  Score=54.31  Aligned_cols=29  Identities=10%  Similarity=0.020  Sum_probs=26.3

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC------CCCC
Q 036787           56 RPDIKHGNYTKEEEDTIIKTRQQHG------NKIM   84 (85)
Q Consensus        56 ~~~~~~~~wt~eEd~~L~~~~~~~g------~~W~   84 (85)
                      +|.+.+++||+|||.+|++++..||      ++|.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~   37 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQ   37 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHH
Confidence            4788899999999999999999999      6784

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=98.20  E-value=1.1e-06  Score=50.62  Aligned_cols=27  Identities=7%  Similarity=0.064  Sum_probs=24.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787           58 DIKHGNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        58 ~~~~~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      ...+++||++||.+|++++..||++|.
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~   41 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWN   41 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHH
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHH
Confidence            346789999999999999999999995

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=98.18  E-value=5.4e-07  Score=55.86  Aligned_cols=30  Identities=10%  Similarity=0.228  Sum_probs=26.9

Q ss_pred             hcCCCCCCCCCHHHHHHHHHHHHHhCC-CCC
Q 036787           55 LRPDIKHGNYTKEEEDTIIKTRQQHGN-KIM   84 (85)
Q Consensus        55 L~~~~~~~~wt~eEd~~L~~~~~~~g~-~W~   84 (85)
                      +.+..++++||++||..|+++|.+||+ +|+
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~   41 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWR   41 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHH
Confidence            455678899999999999999999998 896

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.18  E-value=1.1e-06  Score=52.21  Aligned_cols=38  Identities=16%  Similarity=0.269  Sum_probs=33.2

Q ss_pred             chhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787           43 SGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        43 ~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      .+.=+.++|.++|.+    ++||.||+..|++|+.+||.+|.
T Consensus        16 i~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~   53 (93)
T 3hm5_A           16 VPVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFV   53 (93)
T ss_dssp             CCCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHH
T ss_pred             CCccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCee
Confidence            344567899999976    89999999999999999999994

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=98.17  E-value=7.6e-07  Score=53.93  Aligned_cols=29  Identities=7%  Similarity=0.189  Sum_probs=25.5

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC-CCC
Q 036787           56 RPDIKHGNYTKEEEDTIIKTRQQHGN-KIM   84 (85)
Q Consensus        56 ~~~~~~~~wt~eEd~~L~~~~~~~g~-~W~   84 (85)
                      .+..++++||+|||..|++.|.+||+ +|+
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~   37 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWR   37 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChH
Confidence            34567899999999999999999998 895

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.13  E-value=2.4e-06  Score=50.72  Aligned_cols=44  Identities=18%  Similarity=0.371  Sum_probs=38.3

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccc----------cchhHHHHHHhhhhc
Q 036787           12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP----------KSGKSCRLRWMNYLR   56 (85)
Q Consensus        12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia----------r~~~qcr~rw~~~L~   56 (85)
                      +..++||.||+..|++|+.+|+ ..|..|+          ||..++++||..+..
T Consensus        28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~   81 (93)
T 3hm5_A           28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence            4458999999999999999999 6998886          589999999988653

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=98.02  E-value=2.3e-06  Score=53.06  Aligned_cols=28  Identities=11%  Similarity=0.189  Sum_probs=24.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-CCC
Q 036787           57 PDIKHGNYTKEEEDTIIKTRQQHGN-KIM   84 (85)
Q Consensus        57 ~~~~~~~wt~eEd~~L~~~~~~~g~-~W~   84 (85)
                      ...++++||.|||+.|+++|.+||. +|+
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~   55 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWR   55 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChH
Confidence            3456789999999999999999998 896

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.85  E-value=3.3e-05  Score=42.50  Aligned_cols=46  Identities=15%  Similarity=0.300  Sum_probs=39.4

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc------cchhHHHHHHhhh
Q 036787            8 DGRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP------KSGKSCRLRWMNY   54 (85)
Q Consensus         8 ~~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia------r~~~qcr~rw~~~   54 (85)
                      ..|.+....||+||-.+....+..|| .+|..|+      |+..||...|...
T Consensus         3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            3 SGSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            35678888999999999999999999 5998887      4999998888643

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=97.84  E-value=3.4e-06  Score=47.93  Aligned_cols=28  Identities=11%  Similarity=0.011  Sum_probs=24.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC----CCCC
Q 036787           57 PDIKHGNYTKEEEDTIIKTRQQHG----NKIM   84 (85)
Q Consensus        57 ~~~~~~~wt~eEd~~L~~~~~~~g----~~W~   84 (85)
                      +.+.+++||.+||.+|++++..||    ++|.
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~   45 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWD   45 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHH
Confidence            356788999999999999999999    6784

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.82  E-value=2e-05  Score=58.40  Aligned_cols=43  Identities=26%  Similarity=0.354  Sum_probs=38.7

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhh
Q 036787           12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYL   55 (85)
Q Consensus        12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L   55 (85)
                      ....+||.+|-.+++.++.+|| .+|..||     ||..||+..|.++-
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3568999999999999999999 6999999     59999999998763

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.74  E-value=1.1e-05  Score=46.73  Aligned_cols=43  Identities=23%  Similarity=0.533  Sum_probs=35.2

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCC---------CCccccc---------cchhHHHHHHhhhh
Q 036787           13 KKGAWSKEEDDKLGAYILKYGH---------WNWAQLP---------KSGKSCRLRWMNYL   55 (85)
Q Consensus        13 ~kg~Wt~eED~~L~~~v~~~g~---------~~W~~Ia---------r~~~qcr~rw~~~L   55 (85)
                      +...||.+|-..|+.++.....         ..|..||         ||+.||+.+|.+..
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            4578999999999999975311         1599998         59999999999875

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.55  E-value=2.6e-05  Score=44.31  Aligned_cols=40  Identities=8%  Similarity=0.215  Sum_probs=33.1

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCC---Cccccc-----cchhHHHHHHh
Q 036787           13 KKGAWSKEEDDKLGAYILKYGHW---NWAQLP-----KSGKSCRLRWM   52 (85)
Q Consensus        13 ~kg~Wt~eED~~L~~~v~~~g~~---~W~~Ia-----r~~~qcr~rw~   52 (85)
                      ..++||.+|+.+|..++..|+.+   .|..||     ||..+|+.+|.
T Consensus        19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            35689999999999999999643   799998     69999999985

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.62  E-value=1.5e-05  Score=44.62  Aligned_cols=43  Identities=19%  Similarity=0.276  Sum_probs=36.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC--Cccccc----cchhHHHHHHhhhhc
Q 036787           14 KGAWSKEEDDKLGAYILKYGHW--NWAQLP----KSGKSCRLRWMNYLR   56 (85)
Q Consensus        14 kg~Wt~eED~~L~~~v~~~g~~--~W~~Ia----r~~~qcr~rw~~~L~   56 (85)
                      --.||.|||..|+..+++-|..  .|..||    |++.|+.+||+..+.
T Consensus        14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Lnks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKLDKNPNQVSERFQQLMK   62 (70)
Confidence            3469999999999999998853  798888    699999999988763

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.44  E-value=0.00013  Score=42.95  Aligned_cols=41  Identities=15%  Similarity=0.306  Sum_probs=35.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--CCccccc-----cchhHHHHHHhhhh
Q 036787           15 GAWSKEEDDKLGAYILKYGH--WNWAQLP-----KSGKSCRLRWMNYL   55 (85)
Q Consensus        15 g~Wt~eED~~L~~~v~~~g~--~~W~~Ia-----r~~~qcr~rw~~~L   55 (85)
                      --||.|||..|+..+++-|.  ..|..||     |++.|+.+||+..+
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm   81 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM   81 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            35999999999999999875  3788887     69999999998865

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.43  E-value=9.9e-05  Score=40.18  Aligned_cols=25  Identities=16%  Similarity=0.117  Sum_probs=22.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787           60 KHGNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        60 ~~~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      ..++||++|+.++++++..||++|.
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~   35 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFG   35 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHH
Confidence            4579999999999999999999984

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=97.26  E-value=5.4e-05  Score=51.67  Aligned_cols=26  Identities=19%  Similarity=0.492  Sum_probs=21.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCC
Q 036787           57 PDIKHGNYTKEEEDTIIKTRQQHGNK   82 (85)
Q Consensus        57 ~~~~~~~wt~eEd~~L~~~~~~~g~~   82 (85)
                      +.+++++||+|||++|+++|.++|++
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~   29 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTR   29 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGG
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcC
Confidence            35688999999999999999999985

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=97.20  E-value=0.0014  Score=46.08  Aligned_cols=27  Identities=22%  Similarity=0.356  Sum_probs=25.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccc
Q 036787           15 GAWSKEEDDKLGAYILKYGHWNWAQLP   41 (85)
Q Consensus        15 g~Wt~eED~~L~~~v~~~g~~~W~~Ia   41 (85)
                      +.||..+...++.++..||..+|..||
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA  137 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIA  137 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHT
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHH
Confidence            469999999999999999998999998

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.19  E-value=0.00035  Score=41.19  Aligned_cols=39  Identities=18%  Similarity=0.382  Sum_probs=35.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhh
Q 036787           14 KGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMN   53 (85)
Q Consensus        14 kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~   53 (85)
                      ...||+||.++..+.+..|| .+|..|+     ||..+|-+.|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence            46799999999999999999 6999998     699999998854

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.15  E-value=0.0005  Score=40.64  Aligned_cols=44  Identities=18%  Similarity=0.371  Sum_probs=37.5

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccc----------cchhHHHHHHhhhhc
Q 036787           12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP----------KSGKSCRLRWMNYLR   56 (85)
Q Consensus        12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia----------r~~~qcr~rw~~~L~   56 (85)
                      +....||.||...|++|+..|. -.|..|+          ||..+.++||..+..
T Consensus        28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~   81 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence            4557899999999999999999 5888776          588999999988653

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=97.09  E-value=0.00013  Score=43.12  Aligned_cols=25  Identities=4%  Similarity=0.093  Sum_probs=21.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----CCCC
Q 036787           60 KHGNYTKEEEDTIIKTRQQHG----NKIM   84 (85)
Q Consensus        60 ~~~~wt~eEd~~L~~~~~~~g----~~W~   84 (85)
                      ..++||.+||.+|.+++..||    ++|+
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~   35 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWA   35 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHH
Confidence            468999999999999999996    6785

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.04  E-value=0.00074  Score=37.72  Aligned_cols=40  Identities=23%  Similarity=0.245  Sum_probs=35.1

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccc------cchhHHHHHHhh
Q 036787           13 KKGAWSKEEDDKLGAYILKYGHWNWAQLP------KSGKSCRLRWMN   53 (85)
Q Consensus        13 ~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia------r~~~qcr~rw~~   53 (85)
                      ...+||+||-.+....+..|| .+|..|+      |+..+|...|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            456899999999999999999 5999887      499999988865

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.00  E-value=0.0008  Score=44.16  Aligned_cols=33  Identities=27%  Similarity=0.450  Sum_probs=27.9

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc
Q 036787            9 GRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP   41 (85)
Q Consensus         9 ~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia   41 (85)
                      .+......||.+||..|+..+.+||-++|..|-
T Consensus       129 ~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir  161 (211)
T 4b4c_A          129 KAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIK  161 (211)
T ss_dssp             CCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHH
Confidence            344445679999999999999999999999886

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.79  E-value=0.0027  Score=41.60  Aligned_cols=31  Identities=13%  Similarity=0.077  Sum_probs=24.2

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhC--CCCccccc
Q 036787           11 GMKKGAWSKEEDDKLGAYILKYG--HWNWAQLP   41 (85)
Q Consensus        11 ~~~kg~Wt~eED~~L~~~v~~~g--~~~W~~Ia   41 (85)
                      .-....||..|=..|+.++.+||  ...|..|+
T Consensus         4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~   36 (211)
T 4b4c_A            4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIA   36 (211)
T ss_dssp             ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHH
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHH
Confidence            34556899999999999999999  45788886

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=96.65  E-value=0.0012  Score=37.10  Aligned_cols=27  Identities=7%  Similarity=0.128  Sum_probs=22.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC----CCCC
Q 036787           58 DIKHGNYTKEEEDTIIKTRQQHG----NKIM   84 (85)
Q Consensus        58 ~~~~~~wt~eEd~~L~~~~~~~g----~~W~   84 (85)
                      ....++||.+||.+|.+++..|+    ++|.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~   35 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWE   35 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHH
Confidence            34578999999999999999997    5674

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=96.52  E-value=0.0024  Score=34.54  Aligned_cols=19  Identities=11%  Similarity=0.254  Sum_probs=17.9

Q ss_pred             CCCCCHHHHHHHHHHHHHh
Q 036787           61 HGNYTKEEEDTIIKTRQQH   79 (85)
Q Consensus        61 ~~~wt~eEd~~L~~~~~~~   79 (85)
                      +.+||+|||..|++.|.+|
T Consensus         2 R~~FT~edD~~L~~~v~~~   20 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKEN   20 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHh
Confidence            5799999999999999999

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=96.30  E-value=0.0044  Score=42.81  Aligned_cols=28  Identities=43%  Similarity=0.815  Sum_probs=26.0

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccc
Q 036787           14 KGAWSKEEDDKLGAYILKYGHWNWAQLP   41 (85)
Q Consensus        14 kg~Wt~eED~~L~~~v~~~g~~~W~~Ia   41 (85)
                      ...|+.+||..|+..|.+||.++|.+|-
T Consensus       168 ~c~W~~~dD~~LLvGIykyGyG~We~Ir  195 (270)
T 2xb0_X          168 SSNWTKEEDEKLLIGVFKYGYGSWTQIR  195 (270)
T ss_dssp             SSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCCcChHHHHHHHHHHHHHcCCcHHHHh
Confidence            3569999999999999999999999997

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.01  E-value=0.0069  Score=32.95  Aligned_cols=28  Identities=18%  Similarity=0.253  Sum_probs=25.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787           57 PDIKHGNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        57 ~~~~~~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      |.+...+||++|-.+..+.+..||..|.
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~   32 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKNFF   32 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSCHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCccHH
Confidence            6677889999999999999999999873

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=96.01  E-value=0.0041  Score=42.13  Aligned_cols=24  Identities=17%  Similarity=0.314  Sum_probs=22.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCC
Q 036787           61 HGNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        61 ~~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      ..+||++|+.++++++..||++|.
T Consensus       133 s~~WTeEE~~lFleAl~kYGKDW~  156 (235)
T 2iw5_B          133 NARWTTEEQLLAVQAIRKYGRDFQ  156 (235)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCHH
Confidence            469999999999999999999995

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=95.88  E-value=0.0084  Score=35.33  Aligned_cols=31  Identities=19%  Similarity=0.385  Sum_probs=26.5

Q ss_pred             HHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCCCC
Q 036787           49 LRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNKI   83 (85)
Q Consensus        49 ~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~W   83 (85)
                      +.|..+|.    ...||.+|...|++|+.+|+-+|
T Consensus        22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw   52 (93)
T 4iej_A           22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRF   52 (93)
T ss_dssp             HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCe
Confidence            45777775    36899999999999999999887

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=94.10  E-value=0.045  Score=38.38  Aligned_cols=43  Identities=19%  Similarity=0.231  Sum_probs=35.1

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCC---CCccccc-----------------cchhHHHHHHhhhh
Q 036787           13 KKGAWSKEEDDKLGAYILKYGH---WNWAQLP-----------------KSGKSCRLRWMNYL   55 (85)
Q Consensus        13 ~kg~Wt~eED~~L~~~v~~~g~---~~W~~Ia-----------------r~~~qcr~rw~~~L   55 (85)
                      +...||.+||..|+-++..||-   ++|..|.                 ||+.++..|=...|
T Consensus       211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi  273 (304)
T 1ofc_X          211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI  273 (304)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence            5568999999999999999998   8898884                 58888777755444

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=92.53  E-value=0.1  Score=28.78  Aligned_cols=24  Identities=8%  Similarity=0.141  Sum_probs=21.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCC
Q 036787           60 KHGNYTKEEEDTIIKTRQQHGNKI   83 (85)
Q Consensus        60 ~~~~wt~eEd~~L~~~~~~~g~~W   83 (85)
                      ...+||++|-.+..+.+..||..|
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGKdf   30 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGKDF   30 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCSCH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccH
Confidence            357999999999999999999887

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=90.89  E-value=0.3  Score=27.32  Aligned_cols=21  Identities=5%  Similarity=0.026  Sum_probs=18.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC
Q 036787           61 HGNYTKEEEDTIIKTRQQHGN   81 (85)
Q Consensus        61 ~~~wt~eEd~~L~~~~~~~g~   81 (85)
                      ..+||.+|+.+|..+...|+.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~   28 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPK   28 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCS
T ss_pred             CCCCCHHHHHHHHHHHHHCCC
Confidence            468999999999999999974

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=90.64  E-value=0.19  Score=29.26  Aligned_cols=24  Identities=17%  Similarity=0.242  Sum_probs=21.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCC
Q 036787           61 HGNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        61 ~~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      ...||++|..+..+....||.+|.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~   66 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFG   66 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHH
Confidence            578999999999999999999873

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=90.56  E-value=0.56  Score=25.59  Aligned_cols=24  Identities=21%  Similarity=0.329  Sum_probs=21.2

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhC
Q 036787           10 RGMKKGAWSKEEDDKLGAYILKYG   33 (85)
Q Consensus        10 ~~~~kg~Wt~eED~~L~~~v~~~g   33 (85)
                      +...+-.||+|..+..+.+|+..|
T Consensus         3 ~~k~r~~WT~elH~~Fv~Av~~LG   26 (64)
T 1irz_A            3 QKKPRVLWTHELHNKFLAAVDHLG   26 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHC
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHhC
Confidence            345677899999999999999999

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=89.82  E-value=0.55  Score=33.78  Aligned_cols=43  Identities=23%  Similarity=0.255  Sum_probs=34.2

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCC---CCccccc-----------------cchhHHHHHHhhhh
Q 036787           13 KKGAWSKEEDDKLGAYILKYGH---WNWAQLP-----------------KSGKSCRLRWMNYL   55 (85)
Q Consensus        13 ~kg~Wt~eED~~L~~~v~~~g~---~~W~~Ia-----------------r~~~qcr~rw~~~L   55 (85)
                      ++..||.+||..|+-++..||-   ++|..|-                 ||+..+..|=...|
T Consensus       227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi  289 (374)
T 2y9y_A          227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLL  289 (374)
T ss_dssp             SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence            4557999999999999999998   8898883                 57777776654443

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=89.07  E-value=0.28  Score=36.43  Aligned_cols=24  Identities=17%  Similarity=0.314  Sum_probs=22.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCC
Q 036787           61 HGNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        61 ~~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      ..+||++|-.++++++.+||..|.
T Consensus       380 ~~~WT~eE~~~f~~al~~yGkdw~  403 (482)
T 2xag_B          380 NARWTTEEQLLAVQAIRKYGRDFQ  403 (482)
T ss_dssp             CSCCCHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCHH
Confidence            469999999999999999999994

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=86.88  E-value=0.18  Score=28.41  Aligned_cols=24  Identities=4%  Similarity=-0.112  Sum_probs=19.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----CCC
Q 036787           61 HGNYTKEEEDTIIKTRQQHGN----KIM   84 (85)
Q Consensus        61 ~~~wt~eEd~~L~~~~~~~g~----~W~   84 (85)
                      .++||.+|+.++-.+...|+.    +|-
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWe   47 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWK   47 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSST
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHH
Confidence            468999999999999999985    674

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=86.54  E-value=0.13  Score=28.57  Aligned_cols=20  Identities=20%  Similarity=0.346  Sum_probs=18.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCC
Q 036787           62 GNYTKEEEDTIIKTRQQHGN   81 (85)
Q Consensus        62 ~~wt~eEd~~L~~~~~~~g~   81 (85)
                      -.||.+||..||...++-|.
T Consensus        15 vlWTReeDR~IL~~cq~~G~   34 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGP   34 (70)
Confidence            36999999999999998886

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=85.54  E-value=2.2  Score=30.67  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=19.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC
Q 036787           60 KHGNYTKEEEDTIIKTRQQHGN   81 (85)
Q Consensus        60 ~~~~wt~eEd~~L~~~~~~~g~   81 (85)
                      +...||++||..||-++.+||=
T Consensus       227 k~k~yteeEDRfLL~~l~k~G~  248 (374)
T 2y9y_A          227 NKRTYSEEEDRFILLMLFKYGL  248 (374)
T ss_dssp             SCCCSCHHHHHHHHHHHHHHTT
T ss_pred             CCCccCHHHHHHHHHHHHHhcc
Confidence            3457999999999999999983

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=85.22  E-value=0.72  Score=27.00  Aligned_cols=20  Identities=25%  Similarity=0.418  Sum_probs=17.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCC
Q 036787           62 GNYTKEEEDTIIKTRQQHGN   81 (85)
Q Consensus        62 ~~wt~eEd~~L~~~~~~~g~   81 (85)
                      -.||.+||..||...++-|.
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~   53 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGA   53 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTS
T ss_pred             EEeccccCHHHHHHHHhcCC
Confidence            37999999999999998875

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=83.02  E-value=0.82  Score=31.43  Aligned_cols=21  Identities=29%  Similarity=0.457  Sum_probs=19.0

Q ss_pred             CCCHHHHHHHHHHHHHhC-CCC
Q 036787           63 NYTKEEEDTIIKTRQQHG-NKI   83 (85)
Q Consensus        63 ~wt~eEd~~L~~~~~~~g-~~W   83 (85)
                      .|+.+||..||.-+.+|| +.|
T Consensus       170 ~W~~~dD~~LLvGIykyGyG~W  191 (270)
T 2xb0_X          170 NWTKEEDEKLLIGVFKYGYGSW  191 (270)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTCH
T ss_pred             CcChHHHHHHHHHHHHHcCCcH
Confidence            499999999999999999 456

>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}

Probab=80.82  E-value=0.68  Score=28.13  Aligned_cols=40  Identities=18%  Similarity=0.248  Sum_probs=30.1

Q ss_pred             CCcccccc----------chhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHH
Q 036787           35 WNWAQLPK----------SGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQ   77 (85)
Q Consensus        35 ~~W~~Iar----------~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~   77 (85)
                      +.|..||.          .+...+..|..+|.|   -..++++|-..|.+-|.
T Consensus        64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~---YE~~~~~e~~~l~~~v~  113 (121)
T 2rq5_A           64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS---YDSLSPEEHRRLEKEVL  113 (121)
T ss_dssp             TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH---HHHCCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH---HHCcCHHHHhhHHHHHH
Confidence            47888873          346779999999976   34588899888877664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	85
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-15
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	5e-14
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	3e-12
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	6e-10
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	7e-09
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	7e-09
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	6e-07
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	9e-07
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	2e-06
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	3e-05
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	9e-05
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	9e-04

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.7 bits (150), Expect = 2e-15
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 5/52 (9%)

Query: 12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPD 58
          + KG W+KEED +L   + KYG   W+ + K      GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.2 bits (141), Expect = 5e-14
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 14 KGAWSKEEDDKLGAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPD 58
          K  W++EED+KL   + + G  +W  +       +   C+ RW   L P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 50

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.6 bits (131), Expect = 3e-12
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 13/80 (16%)

Query: 14 KGAWSKEEDDKLGAYILKYGHW-----NWAQLPK-----SGKSCRLRWMNYLRPDIKHGN 63
          K +++ EED+ +   + K          + ++       +G S R R+  YL   +++  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 64 YTKEEEDTIIKTRQQHGNKI 83
             +    +   R   GN I
Sbjct: 61 EVDKFGKLV---RDDDGNLI 77

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 48.5 bits (115), Expect = 6e-10
 Identities = 8/78 (10%), Positives = 21/78 (26%), Gaps = 14/78 (17%)

Query: 16 AWSKEEDDKLGAYILKYGHWNWAQLPK---------SGKSCRLRWMNYLR-----PDIKH 61
           +S  E + L   +   G   W  +           +    + +W   +      P  + 
Sbjct: 2  PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 62 GNYTKEEEDTIIKTRQQH 79
          G    ++    +     +
Sbjct: 62 GEPVPQDLLDRVLAAHAY 79

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 7e-09
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 13 KKGAWSKEEDDKLGAYILKYGHWNWAQLPK-------SGKSCRLRWMNYLR 56
          K+ AW  EED  L + + KYG  NW+++         +    + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 7e-09
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 13 KKGAWSKEEDDKLGAYILKYGHWNWAQLPK-------SGKSCRLRWMNYLRPDI 59
          KK  W+ EE + + A + KYG  NWA + K       +    + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 6e-07
 Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 6/58 (10%)

Query: 17 WSKEEDDKLGAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLRPDIKHGNYTKEEE 69
          W+ EE +     + K+G   W ++ K     +    +     Y +  +K G   +   
Sbjct: 5  WTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPN 61

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.4 bits (92), Expect = 9e-07
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 6/48 (12%)

Query: 14 KGAWSKEEDDKLGAYILKYGHWNWAQLPK-----SGKSCRLRWMNYLR 56
          K +W++EED  +     + G+  WA++ K     +  + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (91), Expect = 2e-06
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 5/43 (11%)

Query: 17 WSKEEDDKLGAYILKYGHWNWAQLPK-----SGKSCRLRWMNY 54
          W+ +E+  L   ++  G  NW  +       + + C   +M Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY 46

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 36.1 bits (83), Expect = 3e-05
 Identities = 8/53 (15%), Positives = 18/53 (33%), Gaps = 9/53 (16%)

Query: 17 WSKEEDDKLGAYILKYGHWNWAQLP--------KSGKSCRLRWMNYLRPDIKH 61
          WS +E+      +  Y      +          ++ +  +  +   L  DIK+
Sbjct: 4  WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIKY 55

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (79), Expect = 9e-05
 Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 8/47 (17%)

Query: 13 KKGAWSKEEDDKLGAYILKYGHWNWAQLPK--------SGKSCRLRW 51
           +  W++ +   L   + +Y   +     K        S + C  R+
Sbjct: 11 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.5 bits (74), Expect = 9e-04
 Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 7/62 (11%)

Query: 13 KKGAWSKEEDDKLGAYILKYGHWNWA---QLP-KSGKSCRLRWMNYLR---PDIKHGNYT 65
              W+ EE       I KYG    A    +  KS    +  ++NY R    D     + 
Sbjct: 4  CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDEVLQEWE 63

Query: 66 KE 67
           E
Sbjct: 64 AE 65

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	85
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.85
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.85
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.82
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.79
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.76
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.71
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.66
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.62
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.52
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.5
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.38
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.18
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.15
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.03
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.82
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.68
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	98.56
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	98.43
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	98.37
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.0
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	97.96
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	97.93
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.93
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	97.91
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.81
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.65
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	97.6
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	97.52
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	97.35
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.49
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	95.79
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	95.66
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	95.52
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	95.24
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.17
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	93.37
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	92.58
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	91.85
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	88.82

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=2.3e-22  Score=107.72  Aligned_cols=47  Identities=45%  Similarity=0.950  Sum_probs=44.6

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCC
Q 036787           12 MKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPD   58 (85)
Q Consensus        12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~   58 (85)
                      ++||+||+|||++|+.+|.+||.++|..||     ||+.||++||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            579999999999999999999988999999     69999999999999984

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=2.5e-24  Score=126.05  Aligned_cols=66  Identities=17%  Similarity=0.211  Sum_probs=59.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC-----Cccccc-----cchhHHHHHHhhhhcCCCCCCCCCHHHHHHHHHHHHHh
Q 036787           14 KGAWSKEEDDKLGAYILKYGHW-----NWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTKEEEDTIIKTRQQH   79 (85)
Q Consensus        14 kg~Wt~eED~~L~~~v~~~g~~-----~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~   79 (85)
                      |++||+|||++|+++|..||..     +|..||     ||++||++||.++|+|.+++++||++||.+|+.++..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            6899999999999999999854     499999     69999999999999999999999999999987765543

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=5.2e-21  Score=101.55  Aligned_cols=45  Identities=31%  Similarity=0.781  Sum_probs=42.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCC
Q 036787           14 KGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPD   58 (85)
Q Consensus        14 kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~   58 (85)
                      |++||+|||++|+.+|..||.++|..||     ||+.||++||.++|+|+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            6899999999999999999988999999     79999999999999984

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.79  E-value=8.2e-21  Score=110.17  Aligned_cols=66  Identities=12%  Similarity=0.259  Sum_probs=55.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccc---------cchhHHHHHHhhhh-----cCCCCCCCCCHHHHHHHHHHHHHhCC
Q 036787           16 AWSKEEDDKLGAYILKYGHWNWAQLP---------KSGKSCRLRWMNYL-----RPDIKHGNYTKEEEDTIIKTRQQHGN   81 (85)
Q Consensus        16 ~Wt~eED~~L~~~v~~~g~~~W~~Ia---------r~~~qcr~rw~~~L-----~~~~~~~~wt~eEd~~L~~~~~~~g~   81 (85)
                      +||+|||+.|+.+|++||.++|..|+         ||+.||++||+++|     .|..+++.|+++|   |+..|.+++.
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~~   78 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAHA   78 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHHH
Confidence            89999999999999999988999996         79999999999998     4677889999777   4445555555


Q ss_pred             CCC
Q 036787           82 KIM   84 (85)
Q Consensus        82 ~W~   84 (85)
                      +|+
T Consensus        79 ~ws   81 (83)
T d2ckxa1          79 YWS   81 (83)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            554

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.1e-19  Score=96.28  Aligned_cols=48  Identities=31%  Similarity=0.586  Sum_probs=44.6

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccc-------cchhHHHHHHhhhhcCCCC
Q 036787           13 KKGAWSKEEDDKLGAYILKYGHWNWAQLP-------KSGKSCRLRWMNYLRPDIK   60 (85)
Q Consensus        13 ~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-------r~~~qcr~rw~~~L~~~~~   60 (85)
                      ++++||+|||++|+.+|.+||.++|..|+       ||+.||++||++++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            57899999999999999999988999997       6999999999999998764

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.8e-18  Score=91.00  Aligned_cols=43  Identities=33%  Similarity=0.615  Sum_probs=40.1

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccc-------cchhHHHHHHhhhh
Q 036787           13 KKGAWSKEEDDKLGAYILKYGHWNWAQLP-------KSGKSCRLRWMNYL   55 (85)
Q Consensus        13 ~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-------r~~~qcr~rw~~~L   55 (85)
                      ++++||+|||+.|+++|.+||.++|..|+       ||+.||++||.++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999988999997       69999999999875

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=3.5e-17  Score=85.53  Aligned_cols=41  Identities=22%  Similarity=0.556  Sum_probs=38.6

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhh
Q 036787           14 KGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYL   55 (85)
Q Consensus        14 kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L   55 (85)
                      |++||+|||++|+.+|.+|| .+|..||     ||+.||++||.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G-~~W~~Ia~~~~gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHh-hHHHHHHhHcCCCCHHHHHHHHHHHc
Confidence            57999999999999999999 5999998     69999999999987

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.4e-16  Score=83.18  Aligned_cols=39  Identities=26%  Similarity=0.684  Sum_probs=37.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhh
Q 036787           16 AWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNY   54 (85)
Q Consensus        16 ~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~   54 (85)
                      .||+|||++|+.+|..||.++|..||     ||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            59999999999999999988999999     7999999999986

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.4e-15  Score=82.23  Aligned_cols=52  Identities=17%  Similarity=0.401  Sum_probs=45.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhcCCCCCCCCCH
Q 036787           14 KGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLRPDIKHGNYTK   66 (85)
Q Consensus        14 kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~~~~~~~~wt~   66 (85)
                      ...||+|||.+|+.+|..|| .+|..||     ||+.||+.||.+++.+..+.+....
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~   58 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKE   58 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCC
T ss_pred             CCCCCHHHHHHHHHHHHHhc-chHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            35799999999999999999 6999999     6999999999999987766665543

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.1e-14  Score=78.01  Aligned_cols=47  Identities=17%  Similarity=0.401  Sum_probs=42.0

Q ss_pred             CCCCCCCcCCCCHHHHHHHHHHHHHhCCC---Cccccc-----cchhHHHHHHhh
Q 036787            7 YDGRGMKKGAWSKEEDDKLGAYILKYGHW---NWAQLP-----KSGKSCRLRWMN   53 (85)
Q Consensus         7 ~~~~~~~kg~Wt~eED~~L~~~v~~~g~~---~W~~Ia-----r~~~qcr~rw~~   53 (85)
                      ...+...+++||+|||++|+.+|..||.+   +|..||     ||+.||+.||..
T Consensus         5 ~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1           5 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             cccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            35678889999999999999999999965   499999     699999999975

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.38  E-value=1.3e-13  Score=75.45  Aligned_cols=40  Identities=15%  Similarity=0.405  Sum_probs=35.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---ccccc-----cchhHHHHHHhhh
Q 036787           15 GAWSKEEDDKLGAYILKYGHWN---WAQLP-----KSGKSCRLRWMNY   54 (85)
Q Consensus        15 g~Wt~eED~~L~~~v~~~g~~~---W~~Ia-----r~~~qcr~rw~~~   54 (85)
                      .+||+|||++|+.++..||.++   |..||     ||+.||++||...
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L   49 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL   49 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4899999999999999999754   99999     7999999999543

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=9.6e-12  Score=68.14  Aligned_cols=42  Identities=29%  Similarity=0.433  Sum_probs=38.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhhc
Q 036787           14 KGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYLR   56 (85)
Q Consensus        14 kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L~   56 (85)
                      ..+||++||++|+.++..|| .+|..||     ||+.||+++|.++..
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhC-chHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            46899999999999999999 6999999     699999999998753

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.4e-11  Score=68.10  Aligned_cols=46  Identities=15%  Similarity=0.259  Sum_probs=40.2

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccc-----cchhHHHHHHhhhh
Q 036787            9 GRGMKKGAWSKEEDDKLGAYILKYGHWNWAQLP-----KSGKSCRLRWMNYL   55 (85)
Q Consensus         9 ~~~~~kg~Wt~eED~~L~~~v~~~g~~~W~~Ia-----r~~~qcr~rw~~~L   55 (85)
                      +......+||+|||++|+.++..|| .+|..||     ||..||+.+|....
T Consensus        12 ~~~~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          12 KDRQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TSTTTTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            3455668899999999999999999 6999999     69999999998653

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=2.5e-10  Score=66.68  Aligned_cols=46  Identities=17%  Similarity=0.292  Sum_probs=39.6

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCC--ccccc-----cchhHHHHHHhhhh
Q 036787           10 RGMKKGAWSKEEDDKLGAYILKYGHWN--WAQLP-----KSGKSCRLRWMNYL   55 (85)
Q Consensus        10 ~~~~kg~Wt~eED~~L~~~v~~~g~~~--W~~Ia-----r~~~qcr~rw~~~L   55 (85)
                      ++.+...||.|||..|+..++++|...  |..||     |++.||++||...+
T Consensus        29 ~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             CCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            345677899999999999999999533  99998     69999999998765

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=8.3e-10  Score=56.84  Aligned_cols=24  Identities=25%  Similarity=0.486  Sum_probs=22.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCC
Q 036787           61 HGNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        61 ~~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      ++|||+|||.+|+++|.+||++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~   24 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWA   24 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHH
Confidence            579999999999999999999995

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=4.5e-09  Score=55.00  Aligned_cols=26  Identities=35%  Similarity=0.552  Sum_probs=23.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CCCC
Q 036787           59 IKHGNYTKEEEDTIIKTRQQHG-NKIM   84 (85)
Q Consensus        59 ~~~~~wt~eEd~~L~~~~~~~g-~~W~   84 (85)
                      +.+||||++||.+|+++|.+|| ++|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~   27 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWS   27 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHH
Confidence            4689999999999999999999 4784

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.7e-08  Score=52.73  Aligned_cols=25  Identities=16%  Similarity=0.215  Sum_probs=22.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC-CCC
Q 036787           60 KHGNYTKEEEDTIIKTRQQHGN-KIM   84 (85)
Q Consensus        60 ~~~~wt~eEd~~L~~~~~~~g~-~W~   84 (85)
                      ++++||+|||+.|+++|.+||. +|+
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~   26 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWS   26 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHH
Confidence            4789999999999999999996 795

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=5.6e-08  Score=51.18  Aligned_cols=25  Identities=24%  Similarity=0.274  Sum_probs=22.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC-CCC
Q 036787           60 KHGNYTKEEEDTIIKTRQQHGN-KIM   84 (85)
Q Consensus        60 ~~~~wt~eEd~~L~~~~~~~g~-~W~   84 (85)
                      ++.+||++||.+|+++|.+||. +|+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~   26 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWA   26 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHH
Confidence            4679999999999999999994 785

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.37  E-value=6.5e-08  Score=49.97  Aligned_cols=24  Identities=25%  Similarity=0.475  Sum_probs=21.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CCCC
Q 036787           61 HGNYTKEEEDTIIKTRQQHG-NKIM   84 (85)
Q Consensus        61 ~~~wt~eEd~~L~~~~~~~g-~~W~   84 (85)
                      +++||++||++|+++|.+|| ++|+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~   25 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWK   25 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHH
Confidence            57899999999999999999 4685

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=3.2e-06  Score=44.53  Aligned_cols=38  Identities=24%  Similarity=0.323  Sum_probs=34.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccc------cchhHHHHHHhhh
Q 036787           16 AWSKEEDDKLGAYILKYGHWNWAQLP------KSGKSCRLRWMNY   54 (85)
Q Consensus        16 ~Wt~eED~~L~~~v~~~g~~~W~~Ia------r~~~qcr~rw~~~   54 (85)
                      .||+||-.++...+..|| .+|..|+      ||..||.+.|...
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            699999999999999999 6999997      4999999998764

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=2.4e-06  Score=45.74  Aligned_cols=24  Identities=17%  Similarity=0.231  Sum_probs=22.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCC
Q 036787           61 HGNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        61 ~~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      ...||+|||.+|++++..||++|.
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~   25 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWT   25 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHH
Confidence            357999999999999999999995

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2.7e-06  Score=43.10  Aligned_cols=22  Identities=18%  Similarity=0.291  Sum_probs=19.9

Q ss_pred             CCCHHHHHHHHHHHHHhCC-CCC
Q 036787           63 NYTKEEEDTIIKTRQQHGN-KIM   84 (85)
Q Consensus        63 ~wt~eEd~~L~~~~~~~g~-~W~   84 (85)
                      .||.+||.+|+++|..||. +|.
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~   25 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQ   25 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHH
Confidence            5999999999999999995 684

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=3.9e-06  Score=44.61  Aligned_cols=42  Identities=14%  Similarity=0.330  Sum_probs=36.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---Cccccc----cchhHHHHHHhhhhc
Q 036787           15 GAWSKEEDDKLGAYILKYGHW---NWAQLP----KSGKSCRLRWMNYLR   56 (85)
Q Consensus        15 g~Wt~eED~~L~~~v~~~g~~---~W~~Ia----r~~~qcr~rw~~~L~   56 (85)
                      +.||++|+.+|.+++..|+.+   .|..||    |+..+|..||...-+
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vgkt~~ev~~~~k~l~e   50 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLKD   50 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            579999999999999999643   599998    699999999976543

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=3e-06  Score=45.91  Aligned_cols=26  Identities=15%  Similarity=0.175  Sum_probs=23.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCCC
Q 036787           60 KHGNYTKEEEDTIIKTRQQHGNKIMK   85 (85)
Q Consensus        60 ~~~~wt~eEd~~L~~~~~~~g~~W~k   85 (85)
                      ...+||++||.+|++++..||++|.+
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~   41 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGL   41 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHH
Confidence            44789999999999999999999964

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=8.4e-06  Score=43.04  Aligned_cols=26  Identities=15%  Similarity=0.144  Sum_probs=22.7

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC
Q 036787           56 RPDIKHGNYTKEEEDTIIKTRQQHGN   81 (85)
Q Consensus        56 ~~~~~~~~wt~eEd~~L~~~~~~~g~   81 (85)
                      .+...+++||++||.+|++++..||.
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~   32 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPR   32 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCS
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCC
Confidence            34567789999999999999999985

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.1e-05  Score=42.80  Aligned_cols=43  Identities=21%  Similarity=0.367  Sum_probs=33.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC--------Cccccc------cchhHHHHHHhhhhc
Q 036787           14 KGAWSKEEDDKLGAYILKYGHW--------NWAQLP------KSGKSCRLRWMNYLR   56 (85)
Q Consensus        14 kg~Wt~eED~~L~~~v~~~g~~--------~W~~Ia------r~~~qcr~rw~~~L~   56 (85)
                      +.+||.+||+.|++.|..+...        -|..++      +|-.+-|+||..+|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            4689999999999999987422        265554      288888999988874

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=1.9e-05  Score=42.17  Aligned_cols=24  Identities=17%  Similarity=0.314  Sum_probs=22.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCC
Q 036787           61 HGNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        61 ~~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      ..+||++||.+|++++..||.+|.
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~   28 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQ   28 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHH
Confidence            467999999999999999999984

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=97.52  E-value=1.5e-05  Score=42.49  Aligned_cols=20  Identities=5%  Similarity=0.111  Sum_probs=18.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCC
Q 036787           62 GNYTKEEEDTIIKTRQQHGN   81 (85)
Q Consensus        62 ~~wt~eEd~~L~~~~~~~g~   81 (85)
                      .+||++||.+|++++..||.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~   21 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDK   21 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCT
T ss_pred             cCCCHHHHHHHHHHHHHHCC
Confidence            58999999999999999996

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=6.4e-05  Score=43.20  Aligned_cols=34  Identities=18%  Similarity=0.166  Sum_probs=27.3

Q ss_pred             HHHhhhhcCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 036787           49 LRWMNYLRPDIKHGNYTKEEEDTIIKTRQQHGNK   82 (85)
Q Consensus        49 ~rw~~~L~~~~~~~~wt~eEd~~L~~~~~~~g~~   82 (85)
                      ..+.+..++......||.|||.+||+.++++|++
T Consensus        21 A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~   54 (95)
T d1ug2a_          21 ANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQ   54 (95)
T ss_dssp             CCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSC
T ss_pred             cccCccCCCCCccCCcCHHHHHHHHHHHHHcCCc
Confidence            3444455556667899999999999999999987

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.49  E-value=0.0032  Score=33.36  Aligned_cols=42  Identities=14%  Similarity=0.220  Sum_probs=31.7

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCcc---ccc-------cchhHHHHHHhhh
Q 036787           12 MKKGAWSKEEDDKLGAYILKYGHWNWA---QLP-------KSGKSCRLRWMNY   54 (85)
Q Consensus        12 ~~kg~Wt~eED~~L~~~v~~~g~~~W~---~Ia-------r~~~qcr~rw~~~   54 (85)
                      ..+-.||+||.++.+.+++.+|. +|.   .|.       .|..|++-+-+.|
T Consensus         5 k~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           5 KPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            44568999999999999999995 553   332       3888887666554

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.79  E-value=0.008  Score=29.61  Aligned_cols=38  Identities=16%  Similarity=0.253  Sum_probs=32.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccc--------cchhHHHHHHhh
Q 036787           15 GAWSKEEDDKLGAYILKYGHWNWAQLP--------KSGKSCRLRWMN   53 (85)
Q Consensus        15 g~Wt~eED~~L~~~v~~~g~~~W~~Ia--------r~~~qcr~rw~~   53 (85)
                      ..||.||-.-|..-|..+| +.|..|-        |+.......|..
T Consensus         2 knft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHHh
Confidence            4799999999999999999 7999884        677777776654

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.66  E-value=0.0051  Score=30.35  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=20.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC
Q 036787           62 GNYTKEEEDTIIKTRQQHGNKI   83 (85)
Q Consensus        62 ~~wt~eEd~~L~~~~~~~g~~W   83 (85)
                      ..||.||-.-|+.-|..+|+.|
T Consensus         2 knft~eEv~YL~~GVK~~G~~W   23 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMGNHW   23 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSCH
T ss_pred             CcccHHHHHHHHHHHHHhcchh
Confidence            5799999999999999999998

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.52  E-value=0.0052  Score=31.59  Aligned_cols=23  Identities=9%  Similarity=0.150  Sum_probs=21.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCC
Q 036787           62 GNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        62 ~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      ..||++|-.+..+++..||..|.
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~   24 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFN   24 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHH
Confidence            57999999999999999999884

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0087  Score=31.10  Aligned_cols=20  Identities=10%  Similarity=0.250  Sum_probs=17.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhC
Q 036787           61 HGNYTKEEEDTIIKTRQQHG   80 (85)
Q Consensus        61 ~~~wt~eEd~~L~~~~~~~g   80 (85)
                      +.+||.+||+.|++.|..+.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~   21 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENA   21 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhc
Confidence            57999999999999998874

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.05  Score=29.01  Aligned_cols=46  Identities=20%  Similarity=0.413  Sum_probs=38.3

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCC---CCccccc-----cchhHHHHHHhhhhcC
Q 036787           12 MKKGAWSKEEDDKLGAYILKYGH---WNWAQLP-----KSGKSCRLRWMNYLRP   57 (85)
Q Consensus        12 ~~kg~Wt~eED~~L~~~v~~~g~---~~W~~Ia-----r~~~qcr~rw~~~L~~   57 (85)
                      ...+.|+++|=++|-.++.....   +=|..||     ||+..|...|...+..
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccc
Confidence            44678999999999999987643   4599998     8999999999988754

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.37  E-value=0.066  Score=27.98  Aligned_cols=25  Identities=12%  Similarity=0.123  Sum_probs=22.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCCCC
Q 036787           60 KHGNYTKEEEDTIIKTRQQHGNKIM   84 (85)
Q Consensus        60 ~~~~wt~eEd~~L~~~~~~~g~~W~   84 (85)
                      .+-.||+|+-...++++..+|..|+
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~a   30 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERA   30 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcccc
Confidence            3568999999999999999998775

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.58  E-value=0.11  Score=30.76  Aligned_cols=28  Identities=25%  Similarity=0.317  Sum_probs=23.8

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCC---cccc
Q 036787           13 KKGAWSKEEDDKLGAYILKYGHWN---WAQL   40 (85)
Q Consensus        13 ~kg~Wt~eED~~L~~~v~~~g~~~---W~~I   40 (85)
                      ++-.+|.|||.-|+-.+..+|-++   |..|
T Consensus        48 k~k~yteeEDRfLl~~~~~~G~~~~~~~e~i   78 (128)
T d1ofcx2          48 KGKNYTEIEDRFLVCMLHKLGFDKENVYEEL   78 (128)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred             CCCccCHHHHHHHHHHHHHhcCCCccHHHHH
Confidence            444699999999999999999888   6666

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.85  E-value=0.078  Score=27.26  Aligned_cols=20  Identities=10%  Similarity=0.243  Sum_probs=18.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCC
Q 036787           62 GNYTKEEEDTIIKTRQQHGN   81 (85)
Q Consensus        62 ~~wt~eEd~~L~~~~~~~g~   81 (85)
                      +.||.+|+.+|-++...|+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~   21 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPG   21 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCT
T ss_pred             CCCCHHHHHHHHHHHHHCCC
Confidence            57999999999999999973

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.82  E-value=0.22  Score=29.27  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC
Q 036787           58 DIKHGNYTKEEEDTIIKTRQQHG   80 (85)
Q Consensus        58 ~~~~~~wt~eEd~~L~~~~~~~g   80 (85)
                      ..+...+|++||..|+-++.+||
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G   68 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLG   68 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHC
T ss_pred             ccCCCccCHHHHHHHHHHHHHhc
Confidence            44556799999999999999998