Citrus Sinensis ID: 036833

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
Protein Sequence
MSTSVGNNQNPWAPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLEDEDDDSGTDFSPLIIAVIGILASAFILVTYYTIISKYCKRRSDETGLEFSENRDQMSANDQAWQLGNNVGLDEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPAAQASAPGEVSESDANVSAHQYQHTNDAAVLVIHDIEDGVNNEAVVSIVVNDEAPKTPNVQDDSIIEVGVDALPIRRSVSLNSSSCQGPFLVADILSTNEQEDDDEEIQLESTENINSSRSKVMNLVRNSSLGLKRSISTGRFKFTRYGSKDGNSVIIPN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHccEEEEEccccccccccccEEccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccHHccccccccccccccHHHHcccccccccccccccccEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHcccccccccHHHHHcccEEEEEccccccccccEEEEEcccccccEEEEcccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccHHEEcccccccccccccccccccccccccccccEEccccccEccccccEEEEEcccccccccccccc
Coil and Loop (DISEMBL)
mstsvgnnqnpwapyatykdcsqaicsiycpqgcytifpppppfnlededddsgtdfspLIIAVIGILASAFILVTYYTIISKYCkrrsdetglefsenrdqmsaNDQAWQlgnnvgldEALIKSITVCkykkgdglvegsdcsvclsefqeheslrllpkcnhafhlpcidtwlkshsscplcratiisfpaaqasapgevsesdanvsahqyqhtnDAAVLVIHDIEDGVNNEAVVSIVVndeapktpnvqddsiievgvdalpirrsvslnssscqgpfLVADILstneqedddeeiQLESTENINSSRSKVMNLVrnsslglkrsistgrfkftrygskdgnsviipn
Flexible Loop (DISEMBL)
mstsvgnnqnpwaPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLEDEDDDSGTDFSPLIIAVIGILASAFILVTYYTIISKYCKRRSDETGLEFSENRDQMSANDQAWQLGNNVGLDEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPAAQASAPGEVSESDANVSAHQYQHTNDAAVLVIHDIEDGVNNEAVVSIVVNdeapktpnvqddsiIEVGVDALPIRRSVslnssscqgPFLVADILSTNEQEDDDEEIQLEsteninssrskvmnlvrnsslglkrsistgrfkftrygskdgnsviipn
Low Complexity Region (SEG)
MSTSVGNNQNPWAPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLEDEDDDSGTDFSPLIIAVIGILASAFILVTYYTIISKYCKRRSDETGLEFSENRDQMSANDQAWQLGNNVGLDEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPAAQASAPGEVSESDANVSAHQYQHTNDAAVLVIHDIEDGVNNEAVVSIVVNDEAPKTPNVQDDSIIEVGVDALPIRRSVSLNSSSCQGPFLVADILSTNEQedddeeIQLESTENINSSRSKVMNLVRNSSLGLKRSISTGRFKFTRYGSKDGNSVIIPN
Disordered region (IsUnstruct)
********************************************************FSPLIIAVIGILASAFILVTYYTIISKYCKR*********************AWQLGNNVGLDEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPA********************YQHTNDAAVLVIHDIEDGVNNEAVVSIVVNDE******VQDDSIIEVGVDALPIRRSVSLNSSSCQGPFLVADIL****************************************************************
Disordered Region (DISOPRED)
*********NP*APYATYKDCSQAICSIYCPQGCYTI**********************LIIAVIGILASAFILVTYYTIISKYCK**********************************ALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII***************************************************************************************SCQG*F*******************************************************************IP*
Disordered Region (DISEMBL)
********QNPWAPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLEDEDDDSGTDFSPLIIAVIGILASAFILVTYYTIISKYCKRRSDETGLEFSENRDQMSANDQAWQLGNNVGLDEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPAA******************QYQHTNDAAVLVIHDIEDGVNNEAVVSIVVNDEAPKTPNVQDDSIIEVGVDALPIRRSVSLNSSSCQGPFLVADILSTN**********LESTENINSSRSKVMNLVRNSSLGLKRSISTGRFKFTRYGSKDGNSVIIPN
Disordered Region (DISPRO)
*********NPWAPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLE**DDDSGTDFSPLIIAVIGILASAFILVTYYTIISKYCKRR***************************VGLDEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS******************************AVLVIHD********AVVSIV***********************************************************************************GLK*S**T********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTSVGNNQNPWAPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLEDEDDDSGTDFSPLIIAVIGILASAFILVTYYTIISKYCKRRSDETGLEFSENRDQMSANDQAWQLGNNVGLDEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPAAQASAPGEVSESDANVSAHQYQHTNDAAVLVIHDIEDGVNNEAVVSIVVNDEAPKTPNVQDDSIIEVGVDALPIRRSVSLNSSSCQGPFLVADILSTNEQEDDDEEIQLESTENINSSRSKVMNLVRNSSLGLKRSISTGRFKFTRYGSKDGNSVIIPN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	352	2.2.26 [Sep-21-2011]
Q9SRQ8	356	RING-H2 finger protein AT	yes	no	0.863	0.853	0.473	8e-67
Q9LF64	362	RING-H2 finger protein AT	no	no	0.897	0.872	0.464	1e-64
Q7XLY8	383	E3 ubiquitin-protein liga	no	no	0.542	0.498	0.525	1e-53
P0C041	310	Putative RING-H2 finger p	no	no	0.517	0.587	0.464	9e-43
Q8LFY8	413	RING-H2 finger protein AT	no	no	0.511	0.435	0.387	1e-32
Q9LSW9	375	RING-H2 finger protein AT	no	no	0.431	0.405	0.405	8e-28
P93823	381	RING-H2 finger protein AT	no	no	0.5	0.461	0.367	1e-26
Q9LX93	301	E3 ubiquitin-protein liga	no	no	0.230	0.269	0.621	7e-26
Q8GW38	369	RING-H2 finger protein AT	no	no	0.377	0.360	0.409	3e-23
Q8W571	323	RING-H2 finger protein AT	no	no	0.411	0.448	0.347	1e-22

>sp|Q9SRQ8|ATL51_ARATH RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2

 Score =  254 bits (649), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 169/357 (47%), Positives = 211/357 (59%), Gaps = 53/357 (14%)

Query: 8   NQNPWAP-YATYKDCSQAICSIYCPQGCYTIFPPPPPFNLEDEDDDSGTDFSPLIIAVIG 66
           N NPW   Y +Y+DCSQ +CS+YCPQ CY IFPPPP F L+DEDD S +DFSPL+IA+IG
Sbjct: 6   NPNPWGTTYDSYRDCSQGVCSVYCPQWCYVIFPPPPSFYLDDEDDSSSSDFSPLLIALIG 65

Query: 67  ILASAFILVTYYTIISKYCKRRSDETGLEFSENRDQMSANDQAWQLGNNVG--------- 117
           ILASAFILV+YYT+ISKYC RR   +    +   +++S+ D  WQ  NN           
Sbjct: 66  ILASAFILVSYYTLISKYCHRRRHNSSSTSAAAINRISS-DYTWQGTNNNNNNGATNPNQ 124

Query: 118 ---------LDEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHL 168
                    LDE+LIKSITV KY+K DG VE SDCSVCLSEFQE+ESLRLLPKCNHAFH+
Sbjct: 125 TIGGGGGDGLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHV 184

Query: 169 PCIDTWLKSHSSCPLCRATIISFPAAQASAPGEVSESDANVSAHQYQHTNDAAVLVIHDI 228
           PCIDTWLKSHS+CPLCRA I++  A +     +++        +     +D+ V+V  D+
Sbjct: 185 PCIDTWLKSHSNCPLCRAFIVTSSAVEIV---DLTNQQIVTENNSISTGDDSVVVVNLDL 241

Query: 229 EDGVNNEAVVSIVVNDEAPKTPNVQDDSIIEVGVDALPIRRSVSLNSSSCQGPFLVADIL 288
           E   N+ +    V     PK P +QD    E        RRS SLNS    G   +ADIL
Sbjct: 242 E---NSRSRNETVNEGSTPKPPEMQDSRDGEE-------RRSASLNSGG--GVVSIADIL 289

Query: 289 STNEQEDDD-----------EEIQLESTENINSSRSKVMN-----LVRNSSLGLKRS 329
              E EDD+           EE + E T   + S +   N     LVR+S   +KRS
Sbjct: 290 --REIEDDEESAGVGTSRWVEEGEGEKTPPPSGSAANQTNGISNFLVRSSMAAMKRS 344

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1

 Score =  247 bits (630), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 170/366 (46%), Positives = 218/366 (59%), Gaps = 50/366 (13%)

Query: 8   NQNPWAPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLEDEDDDSGTDFSPLI-IAVIG 66
           N NPW+PY +Y DCSQ IC+IYCPQ CY IFPPPPP    D+D  S +     + IA+IG
Sbjct: 4   NPNPWSPYDSYNDCSQGICNIYCPQWCYLIFPPPPPSFFLDDDSSSSSSSFSPLLIALIG 63

Query: 67  ILASAFILVTYYTIISKYCKRR----SDETGLEFSENRDQMSANDQAWQLGNNVGLDEAL 122
           IL SA ILV+YYT+ISKYC R     S ET L  + N +   ++ Q     N  GL+E++
Sbjct: 64  ILTSALILVSYYTLISKYCHRHHQTSSSET-LNLNHNGEGFFSSTQRIST-NGDGLNESM 121

Query: 123 IKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCP 182
           IKSITV KYK GDG V+GSDCSVCLSEF+E+ESLRLLPKCNHAFHLPCIDTWLKSHS+CP
Sbjct: 122 IKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCP 181

Query: 183 LCRA--TIISFPAA---------------QASAPGEVSESDANVSAHQYQHTNDAAVLVI 225
           LCRA  T ++ P A                A   G VSE + N++ ++ Q  +  +V+VI
Sbjct: 182 LCRAFVTGVNNPTASVGQNVSVVVANQSNSAHQTGSVSEINLNLAGYESQTGDFDSVVVI 241

Query: 226 HDIEDGV-NNEAVVSIVVNDEAPKTPNVQDDSIIEVGVDALPIRRSVSLNSSSCQGPFLV 284
            D+E G  N++A   + + +E  +T   +D+       D+LPIRRSVSLNS        +
Sbjct: 242 EDLEIGSRNSDARSELQLPEERRET---KDE-------DSLPIRRSVSLNSGVV---VSI 288

Query: 285 ADILSTNEQEDDDEE-----IQLESTENINSSRSKVMNLVRNSSLG-----LKRSISTGR 334
           AD+L   E ED++ E           E  +     +     N   G       RS+STGR
Sbjct: 289 ADVL--REIEDEEGESGGVGTSQRREEGEDGDGKTIPPTEANQRSGGVSGFFVRSLSTGR 346

Query: 335 FKFTRY 340
           F F+RY
Sbjct: 347 FIFSRY 352

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XLY8|ATL41_ORYSJ E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica GN=Os04g0590900 PE=2 SV=2

 Score =  210 bits (535), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 113/215 (52%), Positives = 138/215 (64%), Gaps = 24/215 (11%)

Query: 12  WAPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLE--DEDDDSGTDFSPLIIAVIGILA 69
           W PY   +DCSQ +CS+YCPQ CY IFPPPPPF++     DD SG  FSPL+IA+IG+LA
Sbjct: 8   WVPYEPTRDCSQGLCSMYCPQWCYFIFPPPPPFDVAGTSADDSSGPVFSPLVIAIIGVLA 67

Query: 70  SAFILVTYYTIISKYCKRRSDETGLEFSENRDQ----------------MSANDQAWQLG 113
           SAF+LV+YYT ISKYC   S   G  F  +                    S + ++W + 
Sbjct: 68  SAFLLVSYYTFISKYCGTVSSLRGRVFGSSSGGAAYGGGAGSGGRHGHGQSRSHESWNVS 127

Query: 114 NNVGLDEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDT 173
              GLDE LI  ITVCKY++GDG V  +DCSVCL EF + ESLRLLP+C+HAFH  CIDT
Sbjct: 128 PPSGLDETLINKITVCKYRRGDGFVHTTDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDT 187

Query: 174 WLKSHSSCPLCRATI------ISFPAAQASAPGEV 202
           WLKSHS+CPLCRA I      ++ P  +  APGE 
Sbjct: 188 WLKSHSNCPLCRANITFVTVGLASPEPEGCAPGET 222

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P0C041|ATL53_ARATH Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana GN=ATL53 PE=3 SV=2

 Score =  174 bits (441), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 91/196 (46%), Positives = 117/196 (59%), Gaps = 14/196 (7%)

Query: 8   NQNPWAPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLEDEDDD---SGTDFSPLIIAV 64
           N + W  Y   +DC+Q +CS +CPQ C  I   PPP + E   +D   S  + SPL+IA+
Sbjct: 6   NPSAWNQYINPRDCTQGLCSTFCPQWCTYINFSPPPISYEQFLNDGVASNPNLSPLVIAI 65

Query: 65  IGILASAFILVTYYTIISKYCKR--------RSDETGLEFSENRDQMSANDQAWQL-GNN 115
            GI A+AF+L  YYT++SKYC           S  + +    N  +    D  + L  + 
Sbjct: 66  FGIFATAFLLAAYYTLVSKYCANDTTNEAASESGRSDIILDVNSPERGDQDDPFALESST 125

Query: 116 VGLDEALIKSITVCKYKKG-DGL-VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDT 173
            GLD+ LIK I   K KK  +G  + G+DCS+CL EF E ESLRLLPKCNH FH+ CID 
Sbjct: 126 AGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDR 185

Query: 174 WLKSHSSCPLCRATII 189
           WLKSHS+CPLCRA II
Sbjct: 186 WLKSHSNCPLCRAKII 201

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFY8|ATL54_ARATH RING-H2 finger protein ATL54 OS=Arabidopsis thaliana GN=ATL54 PE=2 SV=2

 Score =  140 bits (354), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/222 (38%), Positives = 111/222 (50%), Gaps = 42/222 (18%)

Query: 20  DCSQAICSIYCPQGCYTIFPPPPPFN--------------------------LEDEDDDS 53
           DCS  +C   CP  CY   P P  +                           L  +D  S
Sbjct: 22  DCSNGVCDPICPYNCY---PEPDYYTISPQLPPWSSSPQPSPCPSPSISAVYLPSQDSSS 78

Query: 54  GTDFSPLII---AVIGILASAFILVTYYTIIS-------KYCKRRSDETGLEFSENRDQM 103
             D   +I    AV+ IL + F LV  +   S        Y     D   +   E +D+ 
Sbjct: 79  SLDAISIITITGAVLAILLTGFFLVAKFFSDSVNRVNQGTYQSDNEDNDTVMEEEFQDRE 138

Query: 104 SANDQAWQLGNNVGLDEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCN 163
             +   W L    GL +++I SIT+C YK+GDGL+E +DC VCL+EF+E ESLRLLPKCN
Sbjct: 139 QVDHPIW-LIRTTGLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESLRLLPKCN 197

Query: 164 HAFHLPCIDTWLKSHSSCPLCRATI--ISFPAAQASAPGEVS 203
           HAFH+ CIDTWL SH++CPLCRA I  IS    + S P EV+
Sbjct: 198 HAFHISCIDTWLSSHTNCPLCRAGIAMISVTTPRYSGPVEVT 239

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSW9|ATL16_ARATH RING-H2 finger protein ATL16 OS=Arabidopsis thaliana GN=ATL16 PE=2 SV=1

 Score =  124 bits (312), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/175 (40%), Positives = 102/175 (58%), Gaps = 23/175 (13%)

Query: 53  SGTDFSPLIIAVIGILASAFILVTYYTIISKYCK--RRSDETGLEFSENRDQMSANDQAW 110
           +GT F  L +AVIGILA+AF+LV+YY  + K C    R D  G  FS +R + +  D   
Sbjct: 30  TGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILG-RFSLSRRRRNDQDPLM 88

Query: 111 QLGNNV---GLDEALIKSITVCKYKK----GDGLV----------EGSDCSVCLSEFQEH 153
                +   GLDE++I++I + K+KK     DG+              +CSVCLSEFQ+ 
Sbjct: 89  VYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQECSVCLSEFQDE 148

Query: 154 ESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI---ISFPAAQASAPGEVSES 205
           E LR++P C+H FH+ CID WL+++++CPLCR  +    SFP  + SAP    E+
Sbjct: 149 EKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSFPPDRVSAPSTSPEN 203

Arabidopsis thaliana (taxid: 3702)

>sp|P93823|ATL1_ARATH RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1

 Score =  120 bits (302), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 111/215 (51%), Gaps = 39/215 (18%)

Query: 53  SGTDFSPLIIAVIGILASAFILVTYYTIISKYC------------KRRSDETGLEFSENR 100
           SGT+F  L IAVIGILA+AF+LV+YY  + K C            +R SD+  L      
Sbjct: 37  SGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQIDIFRRRRRSSDQNPLMIYSPH 96

Query: 101 DQMSANDQAWQLGNNVGLDEALIKSITVCKYKKGDGLVEGSD-------CSVCLSEFQEH 153
           +             N GLDE+ I++I V K+KK D +    D       CSVCL+EFQE 
Sbjct: 97  EV------------NRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECSVCLNEFQED 144

Query: 154 ESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI---ISFPAAQASAPGEVSES----- 205
           E LR++P C H FH+ CID WL+ +++CPLCR ++    SF     SAP    E+     
Sbjct: 145 EKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLISAPSSPRENSPHSR 204

Query: 206 DANVSAHQYQHTNDAAVLVIHDIEDGVNNEAVVSI 240
           + N+        +D  V++     +G N E+V +I
Sbjct: 205 NRNLEPGLVLGGDDDFVVIELGASNGNNRESVRNI 239

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1

 Score =  118 bits (295), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 66/82 (80%), Gaps = 1/82 (1%)

Query: 108 QAWQLGNNVGLDEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFH 167
             WQ+   VGL  + I SITV  +KKG+G+++G++CSVCL+EF+E ESLRLLPKC+HAFH
Sbjct: 101 HVWQIPT-VGLHRSAINSITVVGFKKGEGIIDGTECSVCLNEFEEDESLRLLPKCSHAFH 159

Query: 168 LPCIDTWLKSHSSCPLCRATII 189
           L CIDTWL SH +CPLCRA ++
Sbjct: 160 LNCIDTWLLSHKNCPLCRAPVL 181

E3 ubiquitin-protein ligase that may be involved in positive regulation of programmed cell death (PCD) by facilitating degradation of negative regulators of PCD. May be involved in the early steps of the plant defense signaling pathway. Undergoes auto-ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GW38|ATL47_ARATH RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/144 (40%), Positives = 88/144 (61%), Gaps = 11/144 (7%)

Query: 58  SPLIIAVIGILASAFILVTYYTIISKYC--KRRSDETGL--------EFSENRDQMSAND 107
           SP+I+ +I +L+  F + +   ++ +Y   K+RS+ +          EFS++        
Sbjct: 50  SPIILFIIVLLSVIFFICSILHLLVRYYLKKKRSNLSSSPNESNQNPEFSDSDTYQRQLQ 109

Query: 108 QAWQLGNNVGLDEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFH 167
           Q + L ++ GLD+ALI ++ V  YK+  G  E  DC+VCL EF E + LRLLP C+HAFH
Sbjct: 110 QLFHL-HDSGLDQALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFH 168

Query: 168 LPCIDTWLKSHSSCPLCRATIISF 191
           + CIDTWL S+S+CPLCR T+ S 
Sbjct: 169 IDCIDTWLLSNSTCPLCRGTLFSL 192

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2 SV=3

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 92/167 (55%), Gaps = 22/167 (13%)

Query: 38  FPPPPPFNLEDEDDDSGTDFSPLIIAVIGILASAFILVTYYTIISKYCKRRSDETGLEFS 97
           F P PP        D  T  +P    V  +L + F L    ++  ++C R + ++   + 
Sbjct: 31  FSPSPP--------DLQTGHTPSKTTVFAVLVTLFFLTGLLSVYIRHCARSNPDSSTRYF 82

Query: 98  ENRDQMSANDQAWQLGNNVGLDEALIKSITVCKYKKGDGLVEGS---DCSVCLSEFQEHE 154
            NR    AND + + G   GLD A+++S  V  Y        GS   +C++CL+E ++HE
Sbjct: 83  RNR----ANDGSSRRG---GLDNAVVESFPVFAYSSVKESKIGSKDLECAICLNELEDHE 135

Query: 155 SLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPAAQASAPGE 201
           ++RLLP CNH FH+ CIDTWL SH++CP+CR+ +     A+++ PG+
Sbjct: 136 TVRLLPICNHLFHIDCIDTWLYSHATCPVCRSNL----TAKSNKPGD 178

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
224124036	304	predicted protein [Populus trichocarpa]	0.821	0.950	0.620	2e-88
225464303	338	PREDICTED: RING-H2 finger protein ATL51	0.906	0.943	0.494	3e-78
224146122	269	predicted protein [Populus trichocarpa]	0.642	0.840	0.628	1e-76
449436824	373	PREDICTED: E3 ubiquitin-protein ligase O	0.960	0.906	0.452	8e-73
225427183	375	PREDICTED: E3 ubiquitin-protein ligase O	0.931	0.874	0.479	3e-69
297833024	355	zinc finger family protein [Arabidopsis	0.889	0.881	0.475	5e-69
449433165	382	PREDICTED: RING-H2 finger protein ATL51-	0.963	0.887	0.520	6e-69
255573483	383	ring finger protein, putative [Ricinus c	0.917	0.843	0.475	2e-68
356496378	364	PREDICTED: E3 ubiquitin-protein ligase O	0.960	0.928	0.469	2e-68
356531427	370	PREDICTED: E3 ubiquitin-protein ligase O	0.963	0.916	0.468	6e-68

>gi|224124036|ref|XP_002319229.1| predicted protein [Populus trichocarpa] gi|222857605|gb|EEE95152.1| predicted protein [Populus trichocarpa]

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 193/311 (62%), Positives = 223/311 (71%), Gaps = 22/311 (7%)

Query: 1   MSTSVGNNQNPWAPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLEDEDDDSGTDFSPL 60
           M ++ GN QNPWAPY+TY+DCSQ ICSIYCPQ CY IFPPPPPF L D  DDS TD SPL
Sbjct: 1   MGSTTGN-QNPWAPYSTYRDCSQGICSIYCPQRCYIIFPPPPPFTLGD--DDSNTDLSPL 57

Query: 61  IIAVIGILASAFILVTYYTIISKYCKRRSDETG-LEFSENRDQMSANDQAWQLGNNVGLD 119
           IIAVIGILASAFILVTYYT+ISKYC+RR    G  + +EN DQM++  +AWQ     GLD
Sbjct: 58  IIAVIGILASAFILVTYYTLISKYCRRRGQGDGATDLNENHDQMAS--EAWQGIPAGGLD 115

Query: 120 EALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS 179
           EAL+KSITVCKYKKGDG VEG++CSVCLSEFQE+ESLRLLPKC+HAFHLPCIDTWLKSH+
Sbjct: 116 EALVKSITVCKYKKGDGFVEGTECSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSHA 175

Query: 180 SCPLCRATIIS---FPAAQASAPGEVSES--DANVSAHQYQHTNDAAVLVIHDIEDGV-N 233
           SCPLCRA I      P+   + P  V E+    NVS  QYQH  + AVLVI D+E     
Sbjct: 176 SCPLCRANIAPANILPSEAPAVPEPVQENLPRTNVSTLQYQHGTNDAVLVIQDLEGSTFR 235

Query: 234 NEAVVSIVVNDEAPKTPNVQDDSIIEVGVDA------LPIRRSVSLNSSSCQGPFLVADI 287
            E VVS+V+ D+ PKTP  QD    + G +        P+RRSVS  SS  Q    +ADI
Sbjct: 236 QEGVVSLVIGDDTPKTPVNQDLESSQTGTELQISDPIQPLRRSVS--SSFSQNHTSIADI 293

Query: 288 LSTNEQEDDDE 298
           L T+  EDDDE
Sbjct: 294 LRTS--EDDDE 302

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464303|ref|XP_002266511.1| PREDICTED: RING-H2 finger protein ATL51 [Vitis vinifera] gi|297744791|emb|CBI38059.3| unnamed protein product [Vitis vinifera]

 Score =  298 bits (763), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 181/366 (49%), Positives = 234/366 (63%), Gaps = 47/366 (12%)

Query: 4   SVGNNQNPWAPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLEDEDDDSGTDFSPLIIA 63
           SVGN+ +PWAPY  Y+DCSQ IC+ YCPQ CY IF PPPP      +DDSGTDFSPLI+A
Sbjct: 3   SVGNS-DPWAPYDGYRDCSQGICNEYCPQWCYIIFSPPPP-----SEDDSGTDFSPLILA 56

Query: 64  VIGILASAFILVTYYTIISKYCKRRSDE-TGLEFSENRDQMSANDQAWQLGNNVGLDEAL 122
           +IGILASAF+LV Y+T+ISKYC+RR    T  E + N+D+M  NDQ  Q+ +  GL+E  
Sbjct: 57  IIGILASAFLLVIYFTVISKYCRRRRGRRTSAEGNGNQDEM-VNDQPLQVAST-GLEEGF 114

Query: 123 IKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCP 182
           IKSITV KYKK  G+VEG+DCSVCLSEF++ E+LRLLPKCNHAFHLPCIDTWLKSHSSCP
Sbjct: 115 IKSITVYKYKKSGGVVEGTDCSVCLSEFEDGENLRLLPKCNHAFHLPCIDTWLKSHSSCP 174

Query: 183 LCRATIISFPAAQASAPGEVSESDAN------VSAHQYQHTNDAAVLVIHDIEDG-VNNE 235
           LCR  I S        P E+SE+         VSA + Q  N  ++L+IHD+E G +  E
Sbjct: 175 LCRFDIRS----AKILPPELSEATQGVPPNIMVSALEVQSGN-RSLLIIHDLESGTIRRE 229

Query: 236 AVVSIVVNDEAPKTP---------NVQDDSIIEVGVDALPIRRSVSLNSSSCQGPFLVAD 286
           AVV + V D+ PK           +   +S IE+  + L +RRS+S + SSC+    + D
Sbjct: 230 AVVRVEVTDDTPKATSEVHRGMENSAGRESTIEIRQEGL-LRRSISFD-SSCEAHVAIPD 287

Query: 287 ILSTNEQEDDDEEIQLESTENINSSRSKVMNLVRNSSLGLKRSISTGRFKFTRYGSKDGN 346
           IL ++E    D  +     EN+N   +  +         ++RSISTGRF   R+G +  +
Sbjct: 288 ILHSSE----DHSLCF-PMENMNEREAMPVT--------MRRSISTGRFMPLRHGKR--S 332

Query: 347 SVIIPN 352
             + PN
Sbjct: 333 PCVFPN 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146122|ref|XP_002325888.1| predicted protein [Populus trichocarpa] gi|222862763|gb|EEF00270.1| predicted protein [Populus trichocarpa]

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 152/242 (62%), Positives = 178/242 (73%), Gaps = 16/242 (6%)

Query: 4   SVGNNQNPWAPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLEDEDDDSGTDFSPLIIA 63
           S  +NQNPW+PY+TYKDCSQ ICS+YCPQ CY IFPPPPP +L D  D S TD SPL IA
Sbjct: 3   STADNQNPWSPYSTYKDCSQGICSVYCPQWCYIIFPPPPPLSLGD--DASNTDLSPLTIA 60

Query: 64  VIGILASAFILVTYYTIISKYCKRR---SDETGLEFSENRDQMSANDQAWQLGNNVGLDE 120
            IGILASAFILVTY+T++SKYC RR   +D T  E ++N+DQM   ++A Q G   GLDE
Sbjct: 61  FIGILASAFILVTYHTLVSKYCSRRGHGNDTT--ELNDNQDQM--GNEASQ-GIPGGLDE 115

Query: 121 ALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSS 180
           A++KSIT+CKYKKGDG VEG+DCSVCL EFQE+ESLR LPKC+HAFHL CIDTWLKSH+S
Sbjct: 116 AVLKSITICKYKKGDGFVEGTDCSVCLGEFQENESLRRLPKCSHAFHLLCIDTWLKSHAS 175

Query: 181 CPLCRATIIS----FPAAQASAPGEVSES--DANVSAHQYQHTNDAAVLVIHDIEDGVNN 234
           CPLCRA I       P+AQA     V E+   +N S  QYQ   + AVLVI D+E  V  
Sbjct: 176 CPLCRANIADPANVLPSAQAPPAVPVQENLPSSNASTLQYQQRTNDAVLVIQDLEGSVGQ 235

Query: 235 EA 236
           E 
Sbjct: 236 EG 237

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436824|ref|XP_004136192.1| PREDICTED: E3 ubiquitin-protein ligase Os04g0590900-like [Cucumis sativus] gi|449532198|ref|XP_004173069.1| PREDICTED: E3 ubiquitin-protein ligase Os04g0590900-like [Cucumis sativus]

 Score =  280 bits (716), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 170/376 (45%), Positives = 217/376 (57%), Gaps = 38/376 (10%)

Query: 1   MSTSVGNNQNPWAPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLEDEDDDSGTDFSPL 60
           M +    N   W PY + KDCSQ  CS+YCPQ CY +F PPPP    D   +SG  FSPL
Sbjct: 1   MGSGSYGNPKTWIPYMSNKDCSQGFCSVYCPQWCYIMFSPPPPLEFPD---NSGPHFSPL 57

Query: 61  IIAVIGILASAFILVTYYTIISKYCKRRSDETGLEFSENRDQMSAND-----QAWQLGNN 115
           +IA+IGILASAF+LVTYYTIISKYC   +  +G    +  ++   N      + W +   
Sbjct: 58  VIAIIGILASAFLLVTYYTIISKYCGNTNRLSGTGNHDPSEEYEDNHNPTFHEPWHVAT- 116

Query: 116 VGLDEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWL 175
            GLDEALIKSITVCKYK+ DGLVEGSDCSVCLSEFQE ESLRLLPKC+HAFHL CIDTWL
Sbjct: 117 TGLDEALIKSITVCKYKREDGLVEGSDCSVCLSEFQEDESLRLLPKCSHAFHLQCIDTWL 176

Query: 176 KSHSSCPLCRATIISFPAAQ-ASAPGEVSESDANVSAHQYQHTNDAAVLVI-----HDIE 229
           KSHS+CPLCRA IIS  A      P   +    N +  +    ND   + +        E
Sbjct: 177 KSHSNCPLCRANIISINAGSPVQLPASTAYPITNETVPETSQDNDYEAVSLDSGQSFSNE 236

Query: 230 DGVNNEAVVSIVVNDEAPKTPNVQDDSIIEVGVDAL-PIRRSVSLNSSSCQGPFLVADIL 288
           DG N+    S + N E       + D+IIE+    L  IRRS+S++  S Q   ++AD+L
Sbjct: 237 DGKNSVRAFSDLGNLE-------KRDTIIELRDGRLQQIRRSISMDHCS-QNHIIIADVL 288

Query: 289 STNEQEDDDEEI-QLESTENINSSRSKVMNLVRNSS-----------LGLKRSISTGRFK 336
             N  EDD   I +  S+ ++ SS+  V    R+S            + +KRS S+GR  
Sbjct: 289 RLN--EDDFGGIDEAGSSGDVGSSKHSVGEDSRSSHRKRILHCVMSPVSMKRSFSSGRLS 346

Query: 337 FTRYGSKDGNSVIIPN 352
            T++G +      +PN
Sbjct: 347 LTKHGREHRGIAPVPN 362

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427183|ref|XP_002277896.1| PREDICTED: E3 ubiquitin-protein ligase Os04g0590900-like [Vitis vinifera]

 Score =  268 bits (684), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 177/369 (47%), Positives = 220/369 (59%), Gaps = 41/369 (11%)

Query: 12  WAPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLEDEDDDSGTDFSPLIIAVIGILASA 71
           W PY + KDCSQ  CS+YCPQ CY   PPPP F   DE+  SG +FSPL+IA+IGILASA
Sbjct: 10  WVPYISTKDCSQGFCSLYCPQWCYIPAPPPPYFEFPDEN--SGPNFSPLVIAIIGILASA 67

Query: 72  FILVTYYTIISKYC------KRRSDETGLEFSENRDQMSANDQAWQLGNNVGLDEALIKS 125
           F+LV+YYTIISKYC      +R + +   E  +N +   A  + W +    GLDEALIKS
Sbjct: 68  FLLVSYYTIISKYCGNMERERRENQDINEELEDNHN--PALHEPWHVAT-TGLDEALIKS 124

Query: 126 ITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCR 185
           IT+CKYKKGDGLVEG+DCSVCLSEF+E ESLRLLPKC+HAFH+ CIDTWLKSHS+CPLCR
Sbjct: 125 ITLCKYKKGDGLVEGTDCSVCLSEFEEEESLRLLPKCSHAFHVQCIDTWLKSHSNCPLCR 184

Query: 186 ATIISFPAAQASAPGEVSESDANVSAHQYQHTNDAAVLVIHDIEDGVNNEAVVSIVVNDE 245
           A I+    +    P  V ES  N    Q        V V  D+E     E    I+ N+ 
Sbjct: 185 ANIVPTTVSPTQLPPPVMESPLNNEPSQQSQLEHENVAVGEDLERVAEEE---EIMRNEV 241

Query: 246 APKTPNV---------QDDSIIEVGVDA-LPIRRSVSLNSSSCQGPFLVADILSTNEQED 295
            PKTP+          + D+IIE+  +    IRRS+SL+  SCQ    VADIL  NE ED
Sbjct: 242 IPKTPSRVFSDLGNSEERDTIIEIRDEGEQQIRRSISLD-YSCQTRLSVADILLMNEDED 300

Query: 296 ---DDEEIQLESTENIN----------SSRSKVMNLVRNSSLGLKRSISTGRFKFTRYGS 342
               D + Q       +          S R++V++ V  S + +KRS S+GR  FTR+  
Sbjct: 301 PQMGDCDCQFPGHVGSSKVAVGEISKYSHRNRVLHCVM-SPVSMKRSFSSGRLLFTRHAR 359

Query: 343 KDGNSVIIP 351
             G   IIP
Sbjct: 360 --GRDGIIP 366

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833024|ref|XP_002884394.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297330234|gb|EFH60653.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  267 bits (683), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 165/347 (47%), Positives = 210/347 (60%), Gaps = 34/347 (9%)

Query: 8   NQNPWAPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLEDEDDDSGTDFSPLIIAVIGI 67
           N NPW  Y +Y+DCSQ +CS+YCPQ CY IFPPPP F L+DEDD S +DFSPL+IA+IGI
Sbjct: 6   NPNPWGTYDSYRDCSQGVCSVYCPQWCYVIFPPPPSFYLDDEDDSSSSDFSPLLIALIGI 65

Query: 68  LASAFILVTYYTIISKYCKRRSDETGLEFSE---NRDQMSANDQAWQ--------LGNNV 116
           LASAFILV+YYT+ISKYC RR   +    S    NRD   ++D  WQ        +G   
Sbjct: 66  LASAFILVSYYTLISKYCHRRRHNSSSSTSAAVINRDHGISSDYTWQEATNPNPTIGGGD 125

Query: 117 GLDEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK 176
           GLDE+LIKSITV KY+K DG VE SDCSVCLSEFQE+ESLRLLPKCNHAFH+PCIDTWLK
Sbjct: 126 GLDESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLK 185

Query: 177 SHSSCPLCRATIISFPAAQASAPGEVSESDANVSAHQYQHTNDAAVLVIHDIEDGVNNEA 236
           SHS+CPLCRA I       ++       +    + +      D +V++  D+E   N+ +
Sbjct: 186 SHSNCPLCRAFIAGVNVTSSAVEIVAVTNQPIATENNSISIGDDSVVINLDLE---NSRS 242

Query: 237 VVSIVVNDEAPKTPNVQDDSIIEVGVDALPIRRSVSLNSSSCQGPFLVADILSTNEQEDD 296
               V     PK P +Q+   +  G + +  RRS +LNS +      +ADIL   E E++
Sbjct: 243 RNETVNGGSTPKPPEMQE---LRDGEEEV-TRRSATLNSGAAV--VSIADILREIEDEEE 296

Query: 297 D---------EEIQLESTENINSSRSKVMN-----LVRNSSLGLKRS 329
                     EE + E T   + S +   N     LVR+S   +KRS
Sbjct: 297 SAGVGTSRWVEEGEGEKTPPPSGSAANQTNGISNFLVRSSMAAMKRS 343

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433165|ref|XP_004134368.1| PREDICTED: RING-H2 finger protein ATL51-like [Cucumis sativus] gi|449487632|ref|XP_004157723.1| PREDICTED: RING-H2 finger protein ATL51-like [Cucumis sativus]

 Score =  267 bits (682), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 240/386 (62%), Gaps = 47/386 (12%)

Query: 4   SVGNNQNPWAPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLEDEDDDSGTDFSPLIIA 63
           SVGN+ N W PYA YKDCS  ICSIYCPQ CY IFPPPPP      + DS TDFSPLIIA
Sbjct: 3   SVGNS-NQWQPYA-YKDCSLEICSIYCPQWCYIIFPPPPP-FGYGSNGDSATDFSPLIIA 59

Query: 64  VIGILASAFILVTYYTIISKYCKRRS----DETGLEFSENRDQMSANDQAW-QLGNNVGL 118
           +IGILASAFILV+YYTIISKYC+ R+    D   +E  EN  Q+   +Q         GL
Sbjct: 60  IIGILASAFILVSYYTIISKYCRNRASTSNDAMEMEDEENISQIRHENQLQAPPLPPPGL 119

Query: 119 DEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH 178
           DEALIKSITVCKYK+GDGLVEG+DCSVCLSEFQE+ESLRLLPKC+HAFHLPCIDTWLKSH
Sbjct: 120 DEALIKSITVCKYKRGDGLVEGTDCSVCLSEFQENESLRLLPKCSHAFHLPCIDTWLKSH 179

Query: 179 SSCPLCRATIISFPAAQASAPGEVSESDANV--SAHQYQH---TNDA-AVLVIHDIED-- 230
           S+CPLCR+ I   P    S P +  ++  +   SA QYQH   TND   V+V+ D++D  
Sbjct: 180 STCPLCRSNI--SPTNLFSTPTQEIQTTQHFVSSAFQYQHQHRTNDTIVVVVVQDLDDLT 237

Query: 231 GVNNEAVVSIVVNDEAPKTPNVQDDSIIE------------------VGVDAL--PIRRS 270
            V  E V S + ND+A  + N ++    E                  V VD +  P RRS
Sbjct: 238 VVRQETVDSRLENDDAS-SKNQREGCAAESQISGARERMNQVRQEYDVVVDGVVEPFRRS 296

Query: 271 VSLNSSSCQGPFLVADILSTNEQEDDDEEIQLESTENINSSRSKVMNLVRN------SSL 324
           VSLNS S QG   VADIL  ++  +++ E        I SS+  V     +      S+L
Sbjct: 297 VSLNSLSWQGQVSVADILRVSQDSEEEAEEDELQQMGIGSSKVFVQEQSHSNHRTGVSNL 356

Query: 325 GLKRSISTGRFKFTRYGSKDGNSVII 350
           G+ RSISTG+  FT YG   G S II
Sbjct: 357 GMNRSISTGKLGFTNYGK--GKSCII 380

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573483|ref|XP_002527667.1| ring finger protein, putative [Ricinus communis] gi|223532972|gb|EEF34738.1| ring finger protein, putative [Ricinus communis]

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 177/372 (47%), Positives = 217/372 (58%), Gaps = 49/372 (13%)

Query: 12  WAPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLEDE--DDDSGTDFSPLIIAVIGILA 69
           W PY   KDCS+  CS+YCPQ CY IFPPPPP    DE  DD+SG  FSPL+IA+IGIL 
Sbjct: 10  WIPYVNGKDCSKGFCSLYCPQWCYIIFPPPPPPPPYDEFPDDNSGPTFSPLVIAIIGILV 69

Query: 70  SAFILVTYYTIISKYC--------KRRSDETGLEFSENRDQMSANDQAWQLGNNVGLDEA 121
           SAF+LV+YYTIISKYC        +RR ++  +E  E+    S + + W +    GLDEA
Sbjct: 70  SAFLLVSYYTIISKYCGNNNNDSARRRENQDQIEELEDNHNPSLH-EPWHV-TTTGLDEA 127

Query: 122 LIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSC 181
           LIKSIT+CKY+KGDGL+EG+DCSVCLSEFQE ES+RLLPKC+HAFH+ CIDTWLKSHS+C
Sbjct: 128 LIKSITMCKYRKGDGLIEGTDCSVCLSEFQEDESIRLLPKCSHAFHVSCIDTWLKSHSNC 187

Query: 182 PLCRATIISFPAAQASAPGEVSESDANVSAH----QYQHTNDAAVLVIHDIEDGVNNEAV 237
           PLCRA II   A+    P        ++       Q  +  +A V V  DIE     E V
Sbjct: 188 PLCRANIIFISASLPPLPPPPPPLMESLLPGDEPIQGSNRANANVAVAQDIE----RERV 243

Query: 238 VS----IVVNDEAPKTPNV---------QDDSIIEVGVDAL---PIRRSVSLNSSSCQGP 281
           VS     V N  APK P           + D+IIE+  +      IRRS SL+   CQ  
Sbjct: 244 VSSEDETVQNHGAPKAPLRVFSDLGSLEERDAIIEIRDERYHRQHIRRSFSLD-HPCQSR 302

Query: 282 FLVADILSTNEQED----------DDEEIQLESTE--NINSSRSKVMNLVRNSSLGLKRS 329
             VADIL  N+ ED           D      S E    NS R K + L   S + +KRS
Sbjct: 303 ASVADILRINQDEDVILNPENCLSGDAGSSKHSVEVSKSNSHRRKRVLLGVLSPVTMKRS 362

Query: 330 ISTGRFKFTRYG 341
            S+GRF  T++G
Sbjct: 363 FSSGRFFLTKHG 374

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496378|ref|XP_003517045.1| PREDICTED: E3 ubiquitin-protein ligase Os04g0590900-like [Glycine max]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 175/373 (46%), Positives = 231/373 (61%), Gaps = 35/373 (9%)

Query: 3   TSVGNNQNPWAPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLEDEDDDSGTDFSPLII 62
            S+GN ++ W PY   KDCSQ  CS+YCPQ CY I+PPP     E  DDDS  +FSPL+I
Sbjct: 2   ASLGNPKS-WVPYMNNKDCSQGFCSLYCPQWCYVIYPPP--PPFEFPDDDSSPNFSPLVI 58

Query: 63  AVIGILASAFILVTYYTIISKYCKRRSDETGLEFSEN----RDQMSANDQAWQLGNNVGL 118
           AVIG+L SAF+LV+YYTIISKYC  R         EN     D   +  + W     +GL
Sbjct: 59  AVIGVLVSAFLLVSYYTIISKYCGSRESSQSENHEENVELEEDHNPSLHEPWH-APTIGL 117

Query: 119 DEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH 178
           DEALIKSITVCKYKKGDGLVE +DCSVCLSEFQ+ ES+RLLPKC+HAFHLPCIDTWLKSH
Sbjct: 118 DEALIKSITVCKYKKGDGLVEVTDCSVCLSEFQDDESVRLLPKCSHAFHLPCIDTWLKSH 177

Query: 179 SSCPLCRATIISFPAAQASAPGEVSESDA-NVSAHQYQHTNDAAVLVIHDIE-DGVNNEA 236
           SSCPLCRA+I +F AA       V+E  + N ++   Q  ++  V V  D E D V  E 
Sbjct: 178 SSCPLCRASIFTFNAAALHVASPVTEPPSRNDTSSGNQRADENIVAVARDSELDAVEGEV 237

Query: 237 VVSI--VVNDEAPKT----PNVQD-DSIIEV---GVDALPIRRSVSLNSSSCQGPFL-VA 285
            ++    V+  A +      N++   S+IE+   G D+  IRR+VS++ S  +G  L +A
Sbjct: 238 TLTHGGAVSKSALRALSDLGNLRGRHSVIEIRDEGYDS--IRRTVSMDHSFQRGSGLSIA 295

Query: 286 DILSTNEQEDD-------DEEIQLESTENINSSRSKVMNLVRNSSLGLKRSISTGRFKFT 338
           D+L  N++ +         +  + ES++  +S R KV++ V  S + +KRS S+GRF  +
Sbjct: 296 DVLHVNQEHEGCSNGAGPSKNSRGESSK--SSYRRKVLHCVL-SPIAMKRSFSSGRFSLS 352

Query: 339 RYGSKDGNSVIIP 351
           R G   G   ++P
Sbjct: 353 RNGR--GRQWVLP 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531427|ref|XP_003534279.1| PREDICTED: E3 ubiquitin-protein ligase Os04g0590900-like [Glycine max]

 Score =  263 bits (673), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 176/376 (46%), Positives = 231/376 (61%), Gaps = 37/376 (9%)

Query: 4   SVGNNQNPWAPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLEDEDDDSGTDFSPLIIA 63
           S+GN +  W PY   KDCSQ  CS+YCPQ CY I+PPPPP   E   DDS  +FSPL+IA
Sbjct: 3   SLGNPKT-WVPYMNNKDCSQGFCSLYCPQWCYVIYPPPPPPPFEFPSDDSSPNFSPLVIA 61

Query: 64  VIGILASAFILVTYYTIISKYCKRRSDETGLEFSENR-----DQMSANDQAWQLGNNVGL 118
           VIG+LASAF+LV+YYTIISKYC  R      E  EN      D   ++ + W   + +GL
Sbjct: 62  VIGVLASAFLLVSYYTIISKYCGNRESSQSEEHEENVELEEDDHNPSHHEPWH-ASTIGL 120

Query: 119 DEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH 178
           DEALIKSIT CKYKKGDGLVE +DCSVCLSEF++ ES+RLLPKC+HAFHLPCIDTWLKSH
Sbjct: 121 DEALIKSITACKYKKGDGLVEVTDCSVCLSEFRDDESVRLLPKCSHAFHLPCIDTWLKSH 180

Query: 179 SSCPLCRATIISF-PAAQASAPGEVSE-SDANVSAHQYQHTNDAAVL-VIHDIE-DGVNN 234
           SSCPLCRA+I +F  AA       V+E +  N +    +H +D  V+ V  D E D V  
Sbjct: 181 SSCPLCRASIFTFNAAAALHVAATVTEPTSRNDTTSGNRHADDENVVAVAGDSESDAVEG 240

Query: 235 EAVVSIVVNDEAPKTPNVQDD--------SIIEV---GVDALPIRRSVSLNSSSCQGPFL 283
           E+V        +     V  D        S+IE+   G D+  IRR+VS++ S  +G  L
Sbjct: 241 ESVTLSHGGAVSKSALRVLSDLGNLRGRHSVIEIRDEGYDS--IRRTVSMDHSFQRGSGL 298

Query: 284 -VADILSTNEQEDD-------DEEIQLESTENINSSRSKVMNLVRNSSLGLKRSISTGRF 335
            +AD+L  N++ +         +  + ES++  +S R +V++ V  S + +KRS S+GRF
Sbjct: 299 SIADVLHVNQEHEGCSNGAGPSKNSRGESSK--SSYRRRVLHCVL-SPIAMKRSFSSGRF 355

Query: 336 KFTRYGSKDGNSVIIP 351
             +R G   G   ++P
Sbjct: 356 SLSRNGR--GKQWVLP 369

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
TAIR|locus:2151421	362	AT5G17600 [Arabidopsis thalian	0.940	0.914	0.470	3.7e-71
TAIR|locus:4515103413	310	ATL4H [Arabidopsis thaliana (t	0.531	0.603	0.465	9.3e-43
UNIPROTKB|Q7XLY8	383	LOC_Os04g50100 "E3 ubiquitin-p	0.696	0.639	0.384	8.4e-42
TAIR|locus:2096444	356	AT3G03550 [Arabidopsis thalian	0.664	0.657	0.411	1.9e-37
TAIR|locus:505006547	367	AT4G33565 [Arabidopsis thalian	0.463	0.444	0.419	3e-33
TAIR|locus:2018334	381	AT1G04360 [Arabidopsis thalian	0.650	0.601	0.356	2.6e-32
TAIR|locus:2207066	413	AT1G72220 [Arabidopsis thalian	0.548	0.467	0.396	6e-32
TAIR|locus:2142449	301	RING1 [Arabidopsis thaliana (t	0.480	0.561	0.393	3.4e-29
TAIR|locus:2054049	423	MEE16 "maternal effect embryo	0.428	0.356	0.391	2.9e-27
TAIR|locus:2118666	472	AT4G30400 [Arabidopsis thalian	0.593	0.442	0.317	5.6e-26

TAIR|locus:2151421 AT5G17600 [Arabidopsis thaliana (taxid:3702)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 168/357 (47%), Positives = 214/357 (59%)

Query:     5 VGNNQNPWAPYATYKDCSQAICSIYCPQGCYTIFPPPPP-FNLEDEDDDSGTDFSPLIIA 63
             +  N NPW+PY +Y DCSQ IC+IYCPQ CY IFPPPPP F L+D+   S + FSPL+IA
Sbjct:     1 MSTNPNPWSPYDSYNDCSQGICNIYCPQWCYLIFPPPPPSFFLDDDSSSSSSSFSPLLIA 60

Query:    64 VIGILASAFILVTYYTIISKYCKRR----SDETGLEFSENRDQMSANDQAWQLGNNVGLD 119
             +IGIL SA ILV+YYT+ISKYC R     S ET L  + N +   ++ Q     N  GL+
Sbjct:    61 LIGILTSALILVSYYTLISKYCHRHHQTSSSET-LNLNHNGEGFFSSTQRIST-NGDGLN 118

Query:   120 EALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS 179
             E++IKSITV KYK GDG V+GSDCSVCLSEF+E+ESLRLLPKCNHAFHLPCIDTWLKSHS
Sbjct:   119 ESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHS 178

Query:   180 SCPLCRATIISFPAAQASAPGEVSESDANVS--AHQYQHTNDAAV-LVIHDIEDGVNNEA 236
             +CPLCRA +       AS    VS   AN S  AHQ    ++  + L  ++ + G  +  
Sbjct:   179 NCPLCRAFVTGVNNPTASVGQNVSVVVANQSNSAHQTGSVSEINLNLAGYESQTGDFDSV 238

Query:   237 VV--SIVV---NDEAPKTPNVQDDSIIEVGVDALPIRRSVSLNSSSCQGPFLVADILST- 290
             VV   + +   N +A     + ++       D+LPIRRSVSLNS        +AD+L   
Sbjct:   239 VVIEDLEIGSRNSDARSELQLPEERRETKDEDSLPIRRSVSLNSGVVVS---IADVLREI 295

Query:   291 -NEQXXXXXXIQLESTENINSSRSKVM--NLVRNSSLGLK----RSISTGRFKFTRY 340
              +E+         +  E       K +        S G+     RS+STGRF F+RY
Sbjct:   296 EDEEGESGGVGTSQRREEGEDGDGKTIPPTEANQRSGGVSGFFVRSLSTGRFIFSRY 352

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:4515103413 ATL4H [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 94/202 (46%), Positives = 121/202 (59%)

Query:     8 NQNPWAPYATYKDCSQAICSIYCPQGCYTIFPPPPPFNLEDEDDD---SGTDFSPLIIAV 64
             N + W  Y   +DC+Q +CS +CPQ C  I   PPP + E   +D   S  + SPL+IA+
Sbjct:     6 NPSAWNQYINPRDCTQGLCSTFCPQWCTYINFSPPPISYEQFLNDGVASNPNLSPLVIAI 65

Query:    65 IGILASAFILVTYYTIISKYC-----KRRSDETG---LEFSENRDQMSANDQAWQL-GNN 115
              GI A+AF+L  YYT++SKYC        + E+G   +    N  +    D  + L  + 
Sbjct:    66 FGIFATAFLLAAYYTLVSKYCANDTTNEAASESGRSDIILDVNSPERGDQDDPFALESST 125

Query:   116 VGLDEALIKSITVCKYKKG-DGL-VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDT 173
              GLD+ LIK I   K KK  +G  + G+DCS+CL EF E ESLRLLPKCNH FH+ CID 
Sbjct:   126 AGLDDTLIKKIGFFKLKKHQNGFKINGTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDR 185

Query:   174 WLKSHSSCPLCRATIISFPAAQ 195
             WLKSHS+CPLCRA II  P  Q
Sbjct:   186 WLKSHSNCPLCRAKII-VPTTQ 206

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q7XLY8 LOC_Os04g50100 "E3 ubiquitin-protein ligase Os04g0590900" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 105/273 (38%), Positives = 143/273 (52%)

Query:    39 PPPPPFNLEDEDDDSGTDFSPLIIAVIGILASAFILVTYYTIISKYCKRRSDETGLEFSE 98
             PPP        DD SG  FSPL+IA+IG+LASAF+LV+YYT ISKYC   S   G  F  
Sbjct:    37 PPPFDVAGTSADDSSGPVFSPLVIAIIGVLASAFLLVSYYTFISKYCGTVSSLRGRVFGS 96

Query:    99 NRDQ----------------MSANDQAWQLGNNVGLDEALIKSITVCKYKKGDGLVEGSD 142
             +                    S + ++W +    GLDE LI  ITVCKY++GDG V  +D
Sbjct:    97 SSGGAAYGGGAGSGGRHGHGQSRSHESWNVSPPSGLDETLINKITVCKYRRGDGFVHTTD 156

Query:   143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI------ISFPAAQA 196
             CSVCL EF + ESLRLLP+C+HAFH  CIDTWLKSHS+CPLCRA I      ++ P  + 
Sbjct:   157 CSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITFVTVGLASPEPEG 216

Query:   197 SAPGEVSESDANVSAHQYQHTNDAAVLVIHDIEDGVNNEAVVSIVVNDEAPKTPNVQD-D 255
              APGE    D   + H+     D    +  + ++ V+  +      +D       +++ +
Sbjct:   217 CAPGETG-GD---NTHEVVVVMDGLENLCEEQQEAVSRASTADDD-HDAKDVAEGMEEAN 271

Query:   256 SIIEVGVDALPIRRSVSLNSSSCQGPFLVADIL 288
                E+  +  P +R  S           +AD+L
Sbjct:   272 GAAEIREEGSPPKRGASSFDLHRDNRMCIADVL 304

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2096444 AT3G03550 [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 110/267 (41%), Positives = 149/267 (55%)

Query:    39 PPPPPFNLEDEDDDSGTDFSPLI--IAVIG---ILASAFILVTYY----------TIISK 83
             PPP  +  +++D  S      LI  I ++    IL S + L++ Y          T  + 
Sbjct:    39 PPPSFYLDDEDDSSSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAAA 98

Query:    84 YCKRRSDETGLEFSENRDQMSAN-DQAWQLGNNVGLDEALIKSITVCKYKKGDGLVEGSD 142
               +  SD T    + N +  + N +Q    G   GLDE+LIKSITV KY+K DG VE SD
Sbjct:    99 INRISSDYTWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVESSD 158

Query:   143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPAAQASAPGEV 202
             CSVCLSEFQE+ESLRLLPKCNHAFH+PCIDTWLKSHS+CPLCRA I++  A +     ++
Sbjct:   159 CSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSSAVEIV---DL 215

Query:   203 SESDANVSAHQYQHTNDAAVLVIH-DIEDGVNNEAVVSIVVNDEAPKTPNVQDDSIIEVG 261
             +     V+ +    T D +V+V++ D+E+  +    V+       PK P +QD      G
Sbjct:   216 TNQQI-VTENNSISTGDDSVVVVNLDLENSRSRNETVN---EGSTPKPPEMQDS---RDG 268

Query:   262 VDALPIRRSVSLNSSSCQGPFLVADIL 288
              +    RRS SLNS    G   +ADIL
Sbjct:   269 EE----RRSASLNSGG--GVVSIADIL 289

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:505006547 AT4G33565 [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 3.0e-33, Sum P(2) = 3.0e-33
 Identities = 76/181 (41%), Positives = 102/181 (56%)

Query:    21 CSQAICSIYCPQGC--YTIFPPPPPFNLEDEDDDSGTDFSPLIIAVIGILASAFILVTYY 78
             CS + C   CP  C    I    PP  +  +D+        LII+   I+ + F+L    
Sbjct:    89 CS-SYCLDECPSICEIVVISGLSPPAEIHHDDNLKRI----LIISASSIITTLFLLTLLV 143

Query:    79 TIISKYCKRRSDET-----GLEFSENRD-----QMSANDQAWQLGNNVGLDEALIKSITV 128
                  Y +RR   T      +E + N D      +  +   W +   +GL+  +I SI V
Sbjct:   144 LCFKFYYRRRRSITTSRRWSMEEARNWDFDGPAPVIVDHPIWHI-RTIGLNPTVISSIKV 202

Query:   129 CKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188
             C+Y K DG+VEG+DCSVCLSEF+E E+LRLLPKC HAFHL CIDTWL+SH++CPLCRA I
Sbjct:   203 CQYSKKDGVVEGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWLRSHTNCPLCRAPI 262

Query:   189 I 189
             +
Sbjct:   263 V 263

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2018334 AT1G04360 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
 Identities = 92/258 (35%), Positives = 131/258 (50%)

Query:    37 IFPPPPP-----FN--LEDEDDDSGTDFSPLIIAVIGILASAFILVTYYTIISKYCKRRS 89
             +FPPPPP     F   +      SGT+F  L IAVIGILA+AF+LV+YY  + K C    
Sbjct:    14 VFPPPPPPPSTTFTSPIFPRTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWH 73

Query:    90 DETGLEFSENRDQMSANDQAWQLGNNV--GLDEALIKSITVCKYKKGDGLVEGSD----- 142
              +  + F   R     N       + V  GLDE+ I++I V K+KK D +V G +     
Sbjct:    74 -QIDI-FRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRD-VVAGEEDQSKN 130

Query:   143 ---CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI---ISFPAAQA 196
                CSVCL+EFQE E LR++P C H FH+ CID WL+ +++CPLCR ++    SF     
Sbjct:   131 SQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVSCEASFTLDLI 190

Query:   197 SAPGEVSES-----DANVSAHQYQHTNDAAVLVIHDIEDGVNNEAVVSI-VVNDEAPKTP 250
             SAP    E+     + N+        +D  V++     +G N E+V +I  + ++   T 
Sbjct:   191 SAPSSPRENSPHSRNRNLEPGLVLGGDDDFVVIELGASNGNNRESVRNIDFLTEQERVTS 250

Query:   251 NVQDDSIIEVGVDALPIR 268
             N          V  LPI+
Sbjct:   251 NEVSTGNSPKSVSPLPIK 268

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2207066 AT1G72220 [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 84/212 (39%), Positives = 111/212 (52%)

Query:    10 NPWAPYATYKDCSQAICSIYCPQGCYTIFPPPPP------FNLEDEDDDSGTDFSPLII- 62
             +P  PY  Y +      S   P    +  P P P        L  +D  S  D   +I  
Sbjct:    29 DPICPYNCYPEPDYYTISPQLPPWSSSPQPSPCPSPSISAVYLPSQDSSSSLDAISIITI 88

Query:    63 --AVIGILASAFILVTYYTIIS-------KYCKRRSDETGLEFSENRDQMSANDQAWQLG 113
               AV+ IL + F LV  +   S        Y     D   +   E +D+   +   W + 
Sbjct:    89 TGAVLAILLTGFFLVAKFFSDSVNRVNQGTYQSDNEDNDTVMEEEFQDREQVDHPIWLI- 147

Query:   114 NNVGLDEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDT 173
                GL +++I SIT+C YK+GDGL+E +DC VCL+EF+E ESLRLLPKCNHAFH+ CIDT
Sbjct:   148 RTTGLQQSIINSITICNYKRGDGLIERTDCPVCLNEFEEDESLRLLPKCNHAFHISCIDT 207

Query:   174 WLKSHSSCPLCRATI--ISFPAAQASAPGEVS 203
             WL SH++CPLCRA I  IS    + S P EV+
Sbjct:   208 WLSSHTNCPLCRAGIAMISVTTPRYSGPVEVT 239

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2142449 RING1 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 74/188 (39%), Positives = 107/188 (56%)

Query:    34 CYTIFPPPPPFNLEDEDDDSGTDFSPLIIAVIG-ILASAFILVTYYTIISKYCKRRSDET 92
             C+  +PPPPP           +   P  I V+G I+   F++   Y  I++  +RR    
Sbjct:    21 CFRQYPPPPP---PPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQ--QRRISAA 75

Query:    93 GL-----EFSENRDQMSAND-----QAWQLGNNVGLDEALIKSITVCKYKKGDGLVEGSD 142
              +        E+ D+    D       WQ+   VGL  + I SITV  +KKG+G+++G++
Sbjct:    76 SVTPGDTNQQEDEDETEERDFSDFHHVWQIPT-VGLHRSAINSITVVGFKKGEGIIDGTE 134

Query:   143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI--ISFPAAQASAPG 200
             CSVCL+EF+E ESLRLLPKC+HAFHL CIDTWL SH +CPLCRA +  I+ P  Q +   
Sbjct:   135 CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQETETN 194

Query:   201 EVSESDAN 208
                +S+++
Sbjct:   195 HQPDSESS 202

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0002238 "response to molecule of fungal origin" evidence=IEP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP;RCA

GO:0012501 "programmed cell death" evidence=IC

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2054049 MEE16 "maternal effect embryo arrest 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 2.9e-27, Sum P(2) = 2.9e-27
 Identities = 61/156 (39%), Positives = 92/156 (58%)

Query:    39 PPPPPFNLEDEDDDSGTD--FSPLIIAVIGILASAFILVTYYTIISKYCKRRSDETGLEF 96
             PPPP   L+     S  +   +P I+ +I IL+  F +     I+ K+    S E+  ++
Sbjct:    19 PPPPLIPLKSNTSLSNLNSKITPNILLIIIILSIIFFISGLLHILVKFLLTPSRESREDY 78

Query:    97 SENRDQMSAN-DQAWQLGNNVGLDEALIKSITVCKYKKGDGL-VEGSDCSVCLSEFQEHE 154
              +N   +     Q + L ++ G+D++LI ++ V  YK   GL +   DC VCL EF+  +
Sbjct:    79 FDNVTALQGQLQQLFNLHDS-GVDQSLIDTLPVFHYKSIVGLKISPFDCPVCLCEFETED 137

Query:   155 SLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190
              LRLLPKC+HAFH+ CIDTWL SHS+CPLCR+ ++S
Sbjct:   138 KLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLLS 173

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2118666 AT4G30400 [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 5.6e-26, Sum P(2) = 5.6e-26
 Identities = 69/217 (31%), Positives = 117/217 (53%)

Query:    39 PPPPPFNLEDEDD-DSGTDFSPLIIAVIGILASAFILVTYYTIISKYCKRRSDETGLEFS 97
             P  PP +L    + D  +  SP I+ +I IL+  F +     ++ ++    S     ++ 
Sbjct:    28 PQEPPLSLRSSANFDLNSKISPSILLIIIILSIIFFISGLLHLLVRFLLTPSSRDREDYF 87

Query:    98 ENRDQMSAN-DQAWQLGNNVGLDEALIKSITVCKYKKGDGLVEGS-DCSVCLSEFQEHES 155
             +N   +     Q + L ++ G+D++ I ++ V  YK   GL     DC+VCL EF+  + 
Sbjct:    88 DNVTALQGQLQQLFHLHDS-GVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDK 146

Query:   156 LRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPAAQASAPGE---VSESDANVSAH 212
             LRLLPKC+HAFH+ CIDTWL SHS+CPLCR++++S  ++          V ES ++ S+ 
Sbjct:   147 LRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLLSDLSSHQDPRSSFLLVLESASDHSSR 206

Query:   213 QYQHTNDAAVLVIHDIEDGVNNEAVVSIVVNDEAPKT 249
             +     D+A  V  + +  V++ A + +V N++   T
Sbjct:   207 EIGGDRDSAACVAANDDIDVSS-AHLGLVGNNDLGST 242

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0080167 "response to karrikin" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SRQ8	ATL51_ARATH	No assigned EC number	0.4733	0.8636	0.8539	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIII.2447.1 hypothetical protein (304 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	352
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	1e-15
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	9e-13
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	6e-12
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	4e-11
smart00184	40	smart00184, RING, Ring finger	4e-08
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	5e-08
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	8e-07
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	8e-07
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	2e-06
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	3e-05
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	4e-05
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	2e-04
TIGR00599	397	TIGR00599, rad18, DNA repair protein rad18	0.003

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 69.7 bits (171), Expect = 1e-15
 Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 1/45 (2%)

Query: 142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRA 186
           +C +CL EF+  E + +LP C H FH  C+D WL+S ++CPLCRA
Sbjct: 2   ECPICLDEFEPGEEVVVLP-CGHVFHKECLDKWLRSSNTCPLCRA 45

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 61.7 bits (150), Expect = 9e-13
 Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATI 188
           +C +CL EF+E     +L  C H F   CID WLKS  ++CPLCR  I
Sbjct: 1   ECPICLEEFRE---PVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 60.1 bits (146), Expect = 6e-12
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 9/53 (16%)

Query: 142 DCSVCLSEFQEHESLRLLP---------KCNHAFHLPCIDTWLKSHSSCPLCR 185
            C++C + F         P         +C HAFHL CI  WLK+ ++CPLCR
Sbjct: 21  VCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 63.5 bits (154), Expect = 4e-11
 Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 15/153 (9%)

Query: 43  PFNLEDEDDDSGTDFSPLIIAVIG--ILASAFILVTYYTIISKYCKRRSDETGLEFSE-- 98
           P    +  D++G  F P +   +G       F  +    +   +  +          E  
Sbjct: 227 PSQSAEAQDETGDMFWPRLSRFVGSRGFRVVFPRIPSQELRFLFLTQSKGSRFNIILEIQ 286

Query: 99  --NRDQMSANDQAWQLGNNVGLDEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESL 156
                   ++ +A           +L         +   G+    +C++C+S F +++ L
Sbjct: 287 INFDVGFYSSSEAIP---TTTTKGSLKPLSIERAVEADKGV----ECAICMSNFIKNDRL 339

Query: 157 RLLPKCNHAFHLPCIDTWLKSHS-SCPLCRATI 188
           R+LP C+H FH+ C+D WL  +S  CP+CR  I
Sbjct: 340 RVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 48.3 bits (115), Expect = 4e-08
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS-SCPLC 184
           C +CL E+ +     +LP C H F   CI  WL+S + +CP+C
Sbjct: 1   CPICLEEYLK--DPVILP-CGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 52.9 bits (127), Expect = 5e-08
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 139 EGSDCSVCLSEFQEHES----LRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190
           +  +C++C+ +  + E       +L  CNH F + CID W K  ++CP+CR   IS
Sbjct: 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS 228

Length = 238

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 44.8 bits (106), Expect = 8e-07
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRA 186
           C +CL   ++     +L  C H F   CI  +LK  S CP+CR 
Sbjct: 5   CPICLDLLRDP---VVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 46.4 bits (110), Expect = 8e-07
 Identities = 15/27 (55%), Positives = 16/27 (59%)

Query: 161 KCNHAFHLPCIDTWLKSHSSCPLCRAT 187
            CNHAFH  CI  WL +   CPL R T
Sbjct: 53  VCNHAFHDHCIYRWLDTKGVCPLDRQT 79

Length = 88

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 4/43 (9%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLC 184
           C +CL E ++   + +LP C H F   CI +WL+S + +CPLC
Sbjct: 1   CPICLEEPKDP--VTILP-CGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 35/175 (20%), Positives = 54/175 (30%), Gaps = 50/175 (28%)

Query: 42  PPFNLEDEDDDSGTDFSPLIIAV----IGILA-SAFILVTY-------------YTIISK 83
             +N E  DDD         + V    + +LA S   +  +             YT    
Sbjct: 194 CVYNYEARDDDDERSTYLFRLEVCYDGLTLLAYSLLFMYQFPYVRVPIYLIRQMYTCF-- 251

Query: 84  YCKRRSDETGLEFSENRDQMSANDQAWQLGNNVGLDEALIKSITVCKYKKGDGLVEGSDC 143
           Y   R       F      +                 A+  + T  +    D       C
Sbjct: 252 YALFRRIREHARFRRATKDL----------------NAMYPTATEEQLTNSDRT-----C 290

Query: 144 SVCLSEF------QEHESLRLLPK---CNHAFHLPCIDTWLKSHSSCPLCRATII 189
           ++C+ E            L + PK   C H  HL C+  WL+   +CP+CR  +I
Sbjct: 291 TICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345

Length = 491

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)

Query: 158 LLPKCNHAFHLPCIDTWLKSHSS---CPLCRAT 187
           +  KC H FH+ CI  WL + +S   CP+CR T
Sbjct: 48  VWGKCKHNFHMHCILKWLATETSKGLCPMCRQT 80

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 142  DCSVCLSEFQEHESL---RLLPKCNHAFHLPCIDTWLKS--HSSCPLCRATIIS 190
            +C++C S     +     +    C + FH  C+  W  S   S+CPLCR+ I  
Sbjct: 1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524

Length = 1525

>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 8/47 (17%)

Query: 143 CSVCLSEFQEHESLR--LLPKCNHAFHLPCIDTWLKSHSSCPLCRAT 187
           C +C       +     +L  C+H F   CI   L +   CPLCRA 
Sbjct: 29  CHIC------KDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAE 69

All proteins in this family for which functions are known are involved in nucleotide excision repair.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 397

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	352
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.78
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.43
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.2
PHA02929	238	N1R/p28-like protein; Provisional	99.17
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.16
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.12
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.84
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.79
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.77
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.73
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.7
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.66
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.66
PHA02926	242	zinc finger-like protein; Provisional	98.61
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.56
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.54
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.51
PF14634	44	zf-RING_5: zinc-RING finger domain	98.5
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.46
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.45
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.36
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.35
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.33
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.3
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.29
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.22
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.12
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.08
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	98.05
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.04
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.94
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.92
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.76
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	97.72
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.72
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.71
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.68
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.65
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.61
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.55
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.51
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.5
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.47
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	97.44
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.39
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.32
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.27
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.06
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	96.94
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.91
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.82
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.78
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.51
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.34
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.2
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	96.07
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.07
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	95.9
KOG0297	391	consensus TNF receptor-associated factor [Signal t	95.9
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	95.62
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	95.49
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	95.22
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	95.16
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.14
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.01
COG5152	259	Uncharacterized conserved protein, contains RING a	94.66
KOG2660	331	consensus Locus-specific chromosome binding protei	94.62
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	94.33
PHA02862	156	5L protein; Provisional	94.07
KOG3039	303	consensus Uncharacterized conserved protein [Funct	93.94
PHA03096	284	p28-like protein; Provisional	93.93
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	93.84
PHA02825	162	LAP/PHD finger-like protein; Provisional	93.68
COG5222	427	Uncharacterized conserved protein, contains RING Z	93.43
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	93.3
KOG1002	791	consensus Nucleotide excision repair protein RAD16	93.24
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	93.22
COG5236	493	Uncharacterized conserved protein, contains RING Z	93.2
KOG4739	233	consensus Uncharacterized protein involved in syna	92.95
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	92.78
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	92.26
PF01708	91	Gemini_mov: Geminivirus putative movement protein	92.26
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	92.06
PF04641	260	Rtf2: Rtf2 RING-finger	92.01
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	91.89
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	91.65
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	89.68
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	89.68
KOG1940	276	consensus Zn-finger protein [General function pred	88.44
COG5175	480	MOT2 Transcriptional repressor [Transcription]	88.05
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	87.55
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	87.37
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	87.22
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	87.2
KOG3653	534	consensus Transforming growth factor beta/activin	87.05
KOG1001	674	consensus Helicase-like transcription factor HLTF/	86.55
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	86.45
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	85.97
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	85.31
KOG0298	1394	consensus DEAD box-containing helicase-like transc	84.9
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	84.78
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	82.3
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	80.56

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=4e-19  Score=172.57  Aligned_cols=80  Identities=34%  Similarity=0.820  Sum_probs=68.7

Q ss_pred             CCCCCCHHHHhhcceeEeecCCCCcCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcC-CCCcccccccccCC
Q 036833          114 NNVGLDEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH-SSCPLCRATIISFP  192 (352)
Q Consensus       114 ~~~gl~~~~i~~lp~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~i~~~~  192 (352)
                      +..++.+..++++|+.+|...+.......|+|||++|..|+++|+|| |+|.||..||++||..+ ..||+|++++....
T Consensus       203 ~~~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~  281 (348)
T KOG4628|consen  203 RRNRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS  281 (348)
T ss_pred             hhhhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence            34467889999999999998876655579999999999999999999 99999999999999776 55999999887654


Q ss_pred             Cc
Q 036833          193 AA  194 (352)
Q Consensus       193 ~~  194 (352)
                      ..
T Consensus       282 ~~  283 (348)
T KOG4628|consen  282 GS  283 (348)
T ss_pred             CC
Confidence            43

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.43  E-value=4.2e-14  Score=98.49  Aligned_cols=44  Identities=50%  Similarity=1.272  Sum_probs=40.1

Q ss_pred             CCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccc
Q 036833          141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCR  185 (352)
Q Consensus       141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR  185 (352)
                      ++|+||+++|..++.+..++ |+|+||..||..|++.+.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence            47999999999888899998 999999999999999999999997

...

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=1.1e-12  Score=124.06  Aligned_cols=50  Identities=44%  Similarity=1.216  Sum_probs=45.3

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCccccccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIIS  190 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  190 (352)
                      +.+|+|||++|-.++++++|| |.|.||..|+++|+.. ...||+||.++++
T Consensus       323 GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         323 GVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            478999999999999999999 9999999999999974 5579999998854

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.17  E-value=2.1e-11  Score=114.02  Aligned_cols=75  Identities=27%  Similarity=0.686  Sum_probs=57.1

Q ss_pred             CCCCCHHHHhhcceeEeecCC--CCcCCCCCcccccccccCcc----eeccCCCCCcccHhHHHHHHhcCCCCccccccc
Q 036833          115 NVGLDEALIKSITVCKYKKGD--GLVEGSDCSVCLSEFQEHES----LRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI  188 (352)
Q Consensus       115 ~~gl~~~~i~~lp~~~~~~~~--~~~~~~~C~ICl~~~~~~~~----~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i  188 (352)
                      ..+..+..++.+|.+..+-..  ......+|+||++.+...+.    +.+++.|+|.||..||..|+..+.+||+||..+
T Consensus       147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~  226 (238)
T PHA02929        147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF  226 (238)
T ss_pred             hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence            355688899999988755322  22345789999999876431    234445999999999999999999999999987


Q ss_pred             c
Q 036833          189 I  189 (352)
Q Consensus       189 ~  189 (352)
                      .
T Consensus       227 ~  227 (238)
T PHA02929        227 I  227 (238)
T ss_pred             e
Confidence            5

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.16  E-value=1.7e-11  Score=94.80  Aligned_cols=45  Identities=38%  Similarity=1.073  Sum_probs=35.2

Q ss_pred             CCCCcccccccccC----------cceeccCCCCCcccHhHHHHHHhcCCCCcccc
Q 036833          140 GSDCSVCLSEFQEH----------ESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCR  185 (352)
Q Consensus       140 ~~~C~ICl~~~~~~----------~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR  185 (352)
                      .+.|+||++.|...          -.+.+.+ |+|.||..||..||+.+.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence            44699999999332          2334444 999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.2e-10  Score=113.01  Aligned_cols=67  Identities=28%  Similarity=0.769  Sum_probs=49.6

Q ss_pred             HHHHhhcceeEeecCCCCcCCCCCcccccc-cccC---------cceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833          120 EALIKSITVCKYKKGDGLVEGSDCSVCLSE-FQEH---------ESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII  189 (352)
Q Consensus       120 ~~~i~~lp~~~~~~~~~~~~~~~C~ICl~~-~~~~---------~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  189 (352)
                      +++-+.+++.+.++.  ..++..|.||+++ |..+         .+.+.|| |||+||.+|+..|+.++++||+||.++.
T Consensus       269 kdl~~~~~t~t~eql--~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p~i  345 (491)
T COG5243         269 KDLNAMYPTATEEQL--TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRPVI  345 (491)
T ss_pred             hHHHhhcchhhhhhh--cCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCccc
Confidence            344444555544443  2346689999999 4443         2446788 9999999999999999999999999954

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.84  E-value=1.8e-09  Score=77.07  Aligned_cols=46  Identities=35%  Similarity=0.920  Sum_probs=39.3

Q ss_pred             CCCCcccccccccCcceeccCCCCCc-ccHhHHHHHHhcCCCCcccccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHA-FHLPCIDTWLKSHSSCPLCRATII  189 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~  189 (352)
                      ...|.||++....   +.++| |||. |+..|+..|++....||+||++|.
T Consensus         2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            3579999998665   77888 9999 999999999999899999999874

...

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.79  E-value=4.1e-09  Score=71.71  Aligned_cols=44  Identities=57%  Similarity=1.337  Sum_probs=36.4

Q ss_pred             CCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCccccccc
Q 036833          142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATI  188 (352)
Q Consensus       142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i  188 (352)
                      +|+||++.+  .+.+.+++ |+|.||..|+..|+.. +..||+||..+
T Consensus         1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            599999998  23455565 9999999999999987 67899999764

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=6.3e-09  Score=98.44  Aligned_cols=48  Identities=33%  Similarity=0.810  Sum_probs=41.8

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF  191 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  191 (352)
                      ...|.+||+....   ...+| |||+||..||..|...+..||+||....+.
T Consensus       239 ~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~ps  286 (293)
T KOG0317|consen  239 TRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPS  286 (293)
T ss_pred             CCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCc
Confidence            4679999999766   55678 999999999999999888999999987554

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.73  E-value=7.1e-09  Score=81.86  Aligned_cols=51  Identities=31%  Similarity=0.815  Sum_probs=38.8

Q ss_pred             CCCCccccccccc--------Ccce-eccCCCCCcccHhHHHHHHhc---CCCCccccccccc
Q 036833          140 GSDCSVCLSEFQE--------HESL-RLLPKCNHAFHLPCIDTWLKS---HSSCPLCRATIIS  190 (352)
Q Consensus       140 ~~~C~ICl~~~~~--------~~~~-~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~i~~  190 (352)
                      ++.|.||...|..        |+.. .++-.|+|.||.+||.+||..   +..||+||+++..
T Consensus        21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF   83 (85)
T ss_pred             CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence            5689999999863        2322 223369999999999999975   4679999998753

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.70  E-value=9.1e-09  Score=69.72  Aligned_cols=39  Identities=36%  Similarity=1.135  Sum_probs=32.6

Q ss_pred             CcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccc
Q 036833          143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLC  184 (352)
Q Consensus       143 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~C  184 (352)
                      |+||++.+..  .+.+++ |||.|+..|+..|++.+..||+|
T Consensus         1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence            8999999876  346676 99999999999999888899998

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.66  E-value=1.6e-08  Score=91.51  Aligned_cols=49  Identities=29%  Similarity=0.847  Sum_probs=39.2

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc----------------CCCCcccccccccC
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS----------------HSSCPLCRATIISF  191 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----------------~~~CP~CR~~i~~~  191 (352)
                      +..+|+||++.++.   ..+++ |||.||..||..|+..                ...||+||..+...
T Consensus        17 ~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~   81 (193)
T PLN03208         17 GDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA   81 (193)
T ss_pred             CccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence            35689999999865   35566 9999999999999842                24799999988543

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=7.1e-09  Score=108.18  Aligned_cols=54  Identities=30%  Similarity=0.883  Sum_probs=46.2

Q ss_pred             CCCCCcccccccccCcc--eeccCCCCCcccHhHHHHHHhcCCCCcccccccccCCC
Q 036833          139 EGSDCSVCLSEFQEHES--LRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPA  193 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~--~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~  193 (352)
                      ....|+||++.+..+..  ...|| |+|+||..|+..|+++.++||+||..+.....
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~~~  345 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDYVL  345 (543)
T ss_pred             cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhcccc
Confidence            35789999999988765  67788 99999999999999999999999996655443

>PHA02926 zinc finger-like protein; Provisional

Probab=98.61  E-value=1.5e-08  Score=92.93  Aligned_cols=52  Identities=29%  Similarity=0.876  Sum_probs=38.9

Q ss_pred             CCCCCcccccccccC-----cceeccCCCCCcccHhHHHHHHhcC------CCCccccccccc
Q 036833          139 EGSDCSVCLSEFQEH-----ESLRLLPKCNHAFHLPCIDTWLKSH------SSCPLCRATIIS  190 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~-----~~~~~lp~C~H~FH~~Ci~~Wl~~~------~~CP~CR~~i~~  190 (352)
                      ...+|+|||+..-..     ...-+|+.|+|.||..||..|...+      .+||+||..+..
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            456899999986332     1234566699999999999998643      359999997653

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.56  E-value=3.6e-08  Score=76.30  Aligned_cols=45  Identities=36%  Similarity=0.695  Sum_probs=34.1

Q ss_pred             cccccccCcceeccC-CCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833          146 CLSEFQEHESLRLLP-KCNHAFHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       146 Cl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      |...+..++.+.+.. .|+|.||.+||.+||..+..||++|+.+..
T Consensus        37 Cq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~   82 (88)
T COG5194          37 CQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL   82 (88)
T ss_pred             cccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence            333334455554433 699999999999999999999999998754

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=3.2e-08  Score=87.75  Aligned_cols=51  Identities=33%  Similarity=0.735  Sum_probs=41.8

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF  191 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  191 (352)
                      ....|+|||+.+...  +.+-.+|||+||..||...++....||+||+.|...
T Consensus       130 ~~~~CPiCl~~~sek--~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEK--VPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK  180 (187)
T ss_pred             cccCCCceecchhhc--cccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence            346799999998764  334347999999999999999999999999877543

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=4.8e-08  Score=90.02  Aligned_cols=50  Identities=30%  Similarity=0.772  Sum_probs=39.3

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcC---CCCcccccccccCC
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH---SSCPLCRATIISFP  192 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~i~~~~  192 (352)
                      ...+|.|||+.-++   .+++. |||.||..||.+||..+   +.||+|+..|....
T Consensus        46 ~~FdCNICLd~akd---PVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~   98 (230)
T KOG0823|consen   46 GFFDCNICLDLAKD---PVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDT   98 (230)
T ss_pred             CceeeeeeccccCC---CEEee-cccceehHHHHHHHhhcCCCeeCCccccccccce
Confidence            34689999998665   44555 99999999999999653   45999999886543

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.50  E-value=7.5e-08  Score=67.02  Aligned_cols=44  Identities=30%  Similarity=0.855  Sum_probs=37.6

Q ss_pred             CCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccc
Q 036833          142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRA  186 (352)
Q Consensus       142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~  186 (352)
                      .|.||++.|......++++ |||+|+..|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            4999999996556677887 9999999999999855678999985

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.46  E-value=9.5e-08  Score=65.06  Aligned_cols=39  Identities=44%  Similarity=1.203  Sum_probs=33.1

Q ss_pred             CcccccccccCcceeccCCCCCcccHhHHHHHHh--cCCCCccc
Q 036833          143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK--SHSSCPLC  184 (352)
Q Consensus       143 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~--~~~~CP~C  184 (352)
                      |+||++.+....  ++++ |+|.|+..|+..|+.  ....||+|
T Consensus         1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999987643  5676 999999999999998  45679998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>smart00184 RING Ring finger

Probab=98.45  E-value=1.4e-07  Score=61.85  Aligned_cols=38  Identities=45%  Similarity=1.258  Sum_probs=32.1

Q ss_pred             CcccccccccCcceeccCCCCCcccHhHHHHHHh-cCCCCccc
Q 036833          143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK-SHSSCPLC  184 (352)
Q Consensus       143 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~C  184 (352)
                      |+||++..   ....+++ |+|.||..|+..|+. .+..||+|
T Consensus         1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence            78999883   3477787 999999999999997 56679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=1.4e-07  Score=76.44  Aligned_cols=52  Identities=33%  Similarity=0.734  Sum_probs=38.8

Q ss_pred             CCCCCcccccccc------------cCcceeccC-CCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833          139 EGSDCSVCLSEFQ------------EHESLRLLP-KCNHAFHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       139 ~~~~C~ICl~~~~------------~~~~~~~lp-~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      ..+.|+||..-+-            ..+.+.+.. .|+|.||.+||.+||+.+..||+|.+++.-
T Consensus        45 ~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~  109 (114)
T KOG2930|consen   45 VVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVF  109 (114)
T ss_pred             eechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence            4567999876541            122333332 599999999999999999999999887753

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.35  E-value=2.6e-07  Score=63.84  Aligned_cols=38  Identities=39%  Similarity=0.985  Sum_probs=28.6

Q ss_pred             CcccccccccCcceeccCCCCCcccHhHHHHHHhcC----CCCccc
Q 036833          143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH----SSCPLC  184 (352)
Q Consensus       143 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~C  184 (352)
                      |+||++-|..   ...|+ |||.|+..||..|.+..    ..||.|
T Consensus         1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            8999999987   55676 99999999999999653    369987

>smart00504 Ubox Modified RING finger domain

Probab=98.33  E-value=4.3e-07  Score=67.22  Aligned_cols=44  Identities=23%  Similarity=0.573  Sum_probs=38.6

Q ss_pred             CCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833          142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII  189 (352)
Q Consensus       142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  189 (352)
                      .|+||++.+...   .+++ |||+|+..||..|+..+.+||+|+..+.
T Consensus         3 ~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~   46 (63)
T smart00504        3 LCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLT   46 (63)
T ss_pred             CCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence            599999998873   4567 9999999999999988889999998774

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=7.8e-07  Score=89.46  Aligned_cols=51  Identities=29%  Similarity=0.888  Sum_probs=39.2

Q ss_pred             CCCCCcccccccccCc--------------ceeccCCCCCcccHhHHHHHHhc-CCCCccccccccc
Q 036833          139 EGSDCSVCLSEFQEHE--------------SLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIIS  190 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~--------------~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  190 (352)
                      ...+|+||+..+.--.              .-.++| |.|+||..|+..|+.. +..||+||.++..
T Consensus       570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            3568999999874311              123567 9999999999999985 4489999998853

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=1.5e-07  Score=72.27  Aligned_cols=50  Identities=34%  Similarity=0.832  Sum_probs=37.2

Q ss_pred             CCCCccccccccc--------Cccee-ccCCCCCcccHhHHHHHHhc---CCCCcccccccc
Q 036833          140 GSDCSVCLSEFQE--------HESLR-LLPKCNHAFHLPCIDTWLKS---HSSCPLCRATII  189 (352)
Q Consensus       140 ~~~C~ICl~~~~~--------~~~~~-~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~i~  189 (352)
                      .+.|-||.-.|..        ++.+- ++-.|.|.||.+||.+|+..   +.-||+||+.+.
T Consensus        20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            3489999998854        33322 22369999999999999964   345999999874

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.22  E-value=7.5e-07  Score=89.17  Aligned_cols=49  Identities=33%  Similarity=0.662  Sum_probs=41.4

Q ss_pred             cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833          138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      .....|+||++.|..   ..+++ |+|.||..||..|+.....||+||..+..
T Consensus        24 e~~l~C~IC~d~~~~---Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        24 DTSLRCHICKDFFDV---PVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             ccccCCCcCchhhhC---ccCCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence            345689999999876   34677 99999999999999887889999998754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.12  E-value=7.6e-07  Score=83.64  Aligned_cols=52  Identities=31%  Similarity=0.711  Sum_probs=42.4

Q ss_pred             cCCCCCcccccccccCc-------ceeccCCCCCcccHhHHHHHH--hcCCCCccccccccc
Q 036833          138 VEGSDCSVCLSEFQEHE-------SLRLLPKCNHAFHLPCIDTWL--KSHSSCPLCRATIIS  190 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~-------~~~~lp~C~H~FH~~Ci~~Wl--~~~~~CP~CR~~i~~  190 (352)
                      .+++.|+||-..+....       ++-.|. |+|+||..||..|.  ..+++||.|+..+..
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl  282 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL  282 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence            45678999999886654       556676 99999999999996  557899999887754

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.08  E-value=7.6e-07  Score=95.04  Aligned_cols=65  Identities=29%  Similarity=0.714  Sum_probs=44.5

Q ss_pred             hcceeEeecCCCCcCCCCCcccccccccCc-ce--eccCCCCCcccHhHHHHHHhc--CCCCcccccccc
Q 036833          125 SITVCKYKKGDGLVEGSDCSVCLSEFQEHE-SL--RLLPKCNHAFHLPCIDTWLKS--HSSCPLCRATII  189 (352)
Q Consensus       125 ~lp~~~~~~~~~~~~~~~C~ICl~~~~~~~-~~--~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~i~  189 (352)
                      .+-.++-+......+..+|+||+..+..-+ .+  ...+.|.|.||..|+.+|++.  +.+||+||..+.
T Consensus      1454 ~l~l~kkNi~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1454 LLGLWKKNIDEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             HHHHHHhhhhhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            333444444445556789999999876321 11  112359999999999999965  567999998764

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=98.05  E-value=1.8e-06  Score=86.14  Aligned_cols=51  Identities=39%  Similarity=0.914  Sum_probs=40.7

Q ss_pred             CCcCCCCCcccccccccCcc-eeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833          136 GLVEGSDCSVCLSEFQEHES-LRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII  189 (352)
Q Consensus       136 ~~~~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  189 (352)
                      +..+..+|+|||+.+..... ++... |.|.||..|+..|.  ..+||+||....
T Consensus       171 ~~tELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~--~~scpvcR~~q~  222 (493)
T KOG0804|consen  171 GLTELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWW--DSSCPVCRYCQS  222 (493)
T ss_pred             CcccCCCcchhHhhcCccccceeeee-cccccchHHHhhcc--cCcChhhhhhcC
Confidence            45677899999999977543 34444 99999999999994  468999998654

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=2.1e-06  Score=80.64  Aligned_cols=49  Identities=37%  Similarity=0.810  Sum_probs=39.9

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHH-HHhcCCC-CcccccccccCC
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDT-WLKSHSS-CPLCRATIISFP  192 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~-Wl~~~~~-CP~CR~~i~~~~  192 (352)
                      +..|+||++....   ...++ |||+||..||.. |-+.+.- ||+||+.+.+..
T Consensus       215 d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         215 DYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             ccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            5679999999765   55677 999999999999 9766554 999999876543

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.94  E-value=6.1e-06  Score=58.92  Aligned_cols=42  Identities=24%  Similarity=0.862  Sum_probs=32.2

Q ss_pred             CCcccccccccCcceeccCCCC-----CcccHhHHHHHHhc--CCCCcccc
Q 036833          142 DCSVCLSEFQEHESLRLLPKCN-----HAFHLPCIDTWLKS--HSSCPLCR  185 (352)
Q Consensus       142 ~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR  185 (352)
                      .|.||++. ..++...+.| |.     |.+|..|+..|+..  +.+||+|+
T Consensus         1 ~CrIC~~~-~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDE-GDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCC-CCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            48999993 3344455788 75     89999999999954  45799994

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=5e-06  Score=81.16  Aligned_cols=48  Identities=33%  Similarity=0.835  Sum_probs=42.0

Q ss_pred             CCCCcccccccccCcceeccCCCCCc-ccHhHHHHHHhcCCCCcccccccccC
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHA-FHLPCIDTWLKSHSSCPLCRATIISF  191 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~~  191 (352)
                      ..+|+|||.+.++   +.+|| |.|. .|..|.+..--.+..||+||+++.+.
T Consensus       290 gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l  338 (349)
T KOG4265|consen  290 GKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEEL  338 (349)
T ss_pred             CCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence            5689999999877   78999 9999 99999999876678899999998653

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.76  E-value=9.8e-06  Score=78.48  Aligned_cols=48  Identities=29%  Similarity=0.705  Sum_probs=42.2

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF  191 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  191 (352)
                      .-.|-||.+-|..   ..++| |+|.||.-||...|..+..||.|+..+.+.
T Consensus        23 lLRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es   70 (442)
T KOG0287|consen   23 LLRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTES   70 (442)
T ss_pred             HHHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccchh
Confidence            3479999999987   55778 999999999999999999999999987654

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.72  E-value=1.9e-05  Score=80.30  Aligned_cols=48  Identities=33%  Similarity=0.689  Sum_probs=37.3

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-----CCCCcccccccccC
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-----HSSCPLCRATIISF  191 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~i~~~  191 (352)
                      ...|+|||+.....   ..+ .|||+||..||-.++..     ...||+||..|...
T Consensus       186 ~~~CPICL~~~~~p---~~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k  238 (513)
T KOG2164|consen  186 DMQCPICLEPPSVP---VRT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK  238 (513)
T ss_pred             CCcCCcccCCCCcc---ccc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence            56799999986552   222 49999999999998743     34699999988763

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.72  E-value=2.3e-05  Score=54.45  Aligned_cols=33  Identities=33%  Similarity=0.830  Sum_probs=21.3

Q ss_pred             CcccccccccCc-ceeccCCCCCcccHhHHHHHHhc
Q 036833          143 CSVCLSEFQEHE-SLRLLPKCNHAFHLPCIDTWLKS  177 (352)
Q Consensus       143 C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~  177 (352)
                      |+||++ |...+ ...+|+ |||+|+.+|++.|+..
T Consensus         1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~   34 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKK   34 (43)
T ss_dssp             -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH
T ss_pred             CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhc
Confidence            899999 75544 457798 9999999999999974

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.71  E-value=1.6e-05  Score=75.65  Aligned_cols=48  Identities=25%  Similarity=0.539  Sum_probs=40.0

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      ....|-||-.-|..   ..+++ |||.||.-||...|..+..||+||.+.-+
T Consensus        24 s~lrC~IC~~~i~i---p~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          24 SMLRCRICDCRISI---PCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             hHHHhhhhhheeec---ceecc-cccchhHHHHHHHhcCCCCCccccccHHh
Confidence            34579999988875   23455 99999999999999999999999987644

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.68  E-value=3.6e-05  Score=74.59  Aligned_cols=54  Identities=20%  Similarity=0.508  Sum_probs=39.3

Q ss_pred             CCCCccccccc-ccCc-ceeccCCCCCcccHhHHHHHH-hcCCCCcccccccccCCCc
Q 036833          140 GSDCSVCLSEF-QEHE-SLRLLPKCNHAFHLPCIDTWL-KSHSSCPLCRATIISFPAA  194 (352)
Q Consensus       140 ~~~C~ICl~~~-~~~~-~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~i~~~~~~  194 (352)
                      ...|++|+..- -... ++.+.+ |||.||..|++..+ .....||.|+..+......
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr   59 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR   59 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence            45799999963 2222 233334 99999999999966 4455799999988776544

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=2.1e-05  Score=73.02  Aligned_cols=43  Identities=42%  Similarity=0.949  Sum_probs=37.9

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCR  185 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR  185 (352)
                      +...|+||++.|...   .++| |+|.||..|+..++.....||.||
T Consensus        12 ~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr   54 (386)
T KOG2177|consen   12 EELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR   54 (386)
T ss_pred             ccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence            456899999999986   7788 999999999999987556799999

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.61  E-value=3.6e-05  Score=59.30  Aligned_cols=47  Identities=19%  Similarity=0.465  Sum_probs=36.1

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCccccccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIIS  190 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  190 (352)
                      ...|+||.+-|.+   ..++| +||.|...||..|+.. +.+||+|+.++..
T Consensus         4 ~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    4 EFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSE   51 (73)
T ss_dssp             GGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred             ccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence            3479999999987   55677 9999999999999987 8899999988765

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.55  E-value=1.9e-05  Score=60.48  Aligned_cols=50  Identities=32%  Similarity=0.778  Sum_probs=23.7

Q ss_pred             CCCcccccccc-cCcce-ecc--CCCCCcccHhHHHHHHhc---CC--------CCccccccccc
Q 036833          141 SDCSVCLSEFQ-EHESL-RLL--PKCNHAFHLPCIDTWLKS---HS--------SCPLCRATIIS  190 (352)
Q Consensus       141 ~~C~ICl~~~~-~~~~~-~~l--p~C~H~FH~~Ci~~Wl~~---~~--------~CP~CR~~i~~  190 (352)
                      .+|.||++.+. .++.. .+-  +.|++.||..|+..||..   ..        .||.|+++|..
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            47999999876 33221 222  269999999999999953   11        39999998753

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.51  E-value=4.2e-05  Score=73.11  Aligned_cols=52  Identities=27%  Similarity=0.767  Sum_probs=43.1

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHh-----------------------cCCCCcccccccccCC
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK-----------------------SHSSCPLCRATIISFP  192 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----------------------~~~~CP~CR~~i~~~~  192 (352)
                      ...|+|||.-|..++...+++ |.|.||..|+.++|.                       ....||+||..|....
T Consensus       115 ~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~  189 (368)
T KOG4445|consen  115 NGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE  189 (368)
T ss_pred             CCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence            457999999999999888888 999999999988763                       1135999999886543

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=4.5e-05  Score=75.11  Aligned_cols=45  Identities=27%  Similarity=0.938  Sum_probs=32.7

Q ss_pred             CCCcccccccccC-cceeccCCCCCcccHhHHHHHHhc---CCCCccccc
Q 036833          141 SDCSVCLSEFQEH-ESLRLLPKCNHAFHLPCIDTWLKS---HSSCPLCRA  186 (352)
Q Consensus       141 ~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~---~~~CP~CR~  186 (352)
                      ..|.|| .++.+. ..+.-...|||+||..|+..|+..   +..||+|+-
T Consensus         5 A~C~Ic-~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i   53 (465)
T KOG0827|consen    5 AECHIC-IDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI   53 (465)
T ss_pred             ceeeEe-ccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence            469999 555443 333333249999999999999964   357999993

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=3.7e-05  Score=55.63  Aligned_cols=46  Identities=30%  Similarity=0.704  Sum_probs=35.3

Q ss_pred             CCCCcccccccccCcceeccCCCCCc-ccHhHHHHHHh-cCCCCcccccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHA-FHLPCIDTWLK-SHSSCPLCRATII  189 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~-~~~~CP~CR~~i~  189 (352)
                      .++|.||++...+   -.+-. |||. .+..|-...++ .+-.||+||++|.
T Consensus         7 ~dECTICye~pvd---sVlYt-CGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    7 SDECTICYEHPVD---SVLYT-CGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             ccceeeeccCcch---HHHHH-cchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            3789999998544   22333 9999 89999776665 6788999999875

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=2.7e-05  Score=76.16  Aligned_cols=43  Identities=35%  Similarity=0.725  Sum_probs=32.5

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII  189 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  189 (352)
                      ...|.||+++..+   ...+| |||+-+  |..-- +....||+||+.|.
T Consensus       305 p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  305 PDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR  347 (355)
T ss_pred             CCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence            3579999999876   77888 999965  65554 22345999999874

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=2.4e-05  Score=76.23  Aligned_cols=50  Identities=30%  Similarity=0.645  Sum_probs=41.3

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHh-cCCCCcccccccccC
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK-SHSSCPLCRATIISF  191 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~  191 (352)
                      .+..|+|||+-++.   .+..++|.|-||.+||..-++ .++.||.||+.+...
T Consensus        42 ~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk   92 (381)
T KOG0311|consen   42 IQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK   92 (381)
T ss_pred             hhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence            45679999999876   555668999999999999995 478899999987543

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.32  E-value=5.5e-05  Score=79.96  Aligned_cols=50  Identities=20%  Similarity=0.511  Sum_probs=40.9

Q ss_pred             CCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833          141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF  191 (352)
Q Consensus       141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  191 (352)
                      ..|++|+..+.++....-.+ |+|.||..||..|-+.-.+||+||..+...
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v  173 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEV  173 (1134)
T ss_pred             hhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhhee
Confidence            46999999887765444444 999999999999999999999999876543

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.00014  Score=71.78  Aligned_cols=52  Identities=35%  Similarity=0.931  Sum_probs=39.6

Q ss_pred             CCCCcccccccccCc----ceeccCCCCCcccHhHHHHHH--hc-----CCCCcccccccccC
Q 036833          140 GSDCSVCLSEFQEHE----SLRLLPKCNHAFHLPCIDTWL--KS-----HSSCPLCRATIISF  191 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~Ci~~Wl--~~-----~~~CP~CR~~i~~~  191 (352)
                      ...|.||++..-...    ...+||.|.|.||..||..|-  .+     .+.||.||....-.
T Consensus       161 ~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v  223 (344)
T KOG1039|consen  161 EKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFV  223 (344)
T ss_pred             cccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccc
Confidence            568999999875532    134567899999999999997  33     36799999876543

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.06  E-value=0.00013  Score=54.78  Aligned_cols=46  Identities=30%  Similarity=0.696  Sum_probs=23.1

Q ss_pred             CCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833          141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF  191 (352)
Q Consensus       141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  191 (352)
                      -.|++|.+-++..   ..+..|.|+|+..||..-+.  .-||+|+.+....
T Consensus         8 LrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~q   53 (65)
T PF14835_consen    8 LRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQ   53 (65)
T ss_dssp             TS-SSS-S--SS----B---SSS--B-TTTGGGGTT--TB-SSS--B-S-S
T ss_pred             cCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcC--CCCCCcCChHHHH
Confidence            4699999998763   33446999999999988554  3599998876443

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.00039  Score=66.68  Aligned_cols=52  Identities=27%  Similarity=0.462  Sum_probs=40.1

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCcccccccccCCCcC
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIISFPAAQ  195 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~~~~~  195 (352)
                      ..+|+||+....-   ...|+ |+|.||..||..-.+. ..+|++||.+|...-..+
T Consensus         7 ~~eC~IC~nt~n~---Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~   59 (324)
T KOG0824|consen    7 KKECLICYNTGNC---PVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFE   59 (324)
T ss_pred             CCcceeeeccCCc---Ccccc-ccchhhhhhhcchhhcCCCCCceecCCCCcchhcc
Confidence            4589999988544   35566 9999999999987755 456999999987654433

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.00054  Score=68.12  Aligned_cols=48  Identities=31%  Similarity=0.891  Sum_probs=36.1

Q ss_pred             CCCCcccccccccC-cceeccCCCCCcccHhHHHHHHhc--CCCCcccccc
Q 036833          140 GSDCSVCLSEFQEH-ESLRLLPKCNHAFHLPCIDTWLKS--HSSCPLCRAT  187 (352)
Q Consensus       140 ~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~  187 (352)
                      ..+|+|||+.+... +.....+.|+|.|-.+||+.||.+  ...||.|...
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k   54 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK   54 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence            56899999998653 333333469999999999999942  3359999653

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.00046  Score=73.33  Aligned_cols=46  Identities=30%  Similarity=0.750  Sum_probs=36.8

Q ss_pred             CCCcccccccccCcceeccCCCCCcccHhHHHHHHh-cCCCCccccccccc
Q 036833          141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK-SHSSCPLCRATIIS  190 (352)
Q Consensus       141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~  190 (352)
                      -.|++|-..+++   +.+. +|+|+||..|+..-+. ++..||.|-+.+-.
T Consensus       644 LkCs~Cn~R~Kd---~vI~-kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFga  690 (698)
T KOG0978|consen  644 LKCSVCNTRWKD---AVIT-KCGHVFCEECVQTRYETRQRKCPKCNAAFGA  690 (698)
T ss_pred             eeCCCccCchhh---HHHH-hcchHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence            569999977665   4444 5999999999999994 56789999887643

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.78  E-value=0.00054  Score=67.92  Aligned_cols=46  Identities=28%  Similarity=0.839  Sum_probs=38.4

Q ss_pred             CCcccccccccCcceeccCCCCCcccHhHHHHHHhc--CCCCcccccccccC
Q 036833          142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS--HSSCPLCRATIISF  191 (352)
Q Consensus       142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~i~~~  191 (352)
                      .|-||-++=   ..+++-| |||..|..|+..|-..  .++||.||..|.-.
T Consensus       371 LCKICaend---KdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt  418 (563)
T KOG1785|consen  371 LCKICAEND---KDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT  418 (563)
T ss_pred             HHHHhhccC---CCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence            499998874   3488898 9999999999999633  57899999998653

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=0.0017  Score=65.32  Aligned_cols=50  Identities=32%  Similarity=0.817  Sum_probs=41.9

Q ss_pred             cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833          138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF  191 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  191 (352)
                      ..+.+|.||+..+..   ...+| |||.|+..||++-+....-||.||..+.+.
T Consensus        82 ~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~  131 (398)
T KOG4159|consen   82 RSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVEL  131 (398)
T ss_pred             cchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCcccccccccc
Confidence            456789999888766   45667 999999999999887777899999999864

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.34  E-value=0.0012  Score=56.59  Aligned_cols=35  Identities=14%  Similarity=0.567  Sum_probs=29.7

Q ss_pred             CCCCcccccccccCcceeccCCCC------CcccHhHHHHHH
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCN------HAFHLPCIDTWL  175 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~------H~FH~~Ci~~Wl  175 (352)
                      ..+|+||++.+...++++.++ |+      |.||.+|+.+|-
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~   66 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWR   66 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHH
Confidence            458999999998866677776 66      889999999994

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.20  E-value=0.0027  Score=71.15  Aligned_cols=66  Identities=26%  Similarity=0.553  Sum_probs=45.3

Q ss_pred             hcceeEeecCCCC-cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcC----------CCCcccccccccC
Q 036833          125 SITVCKYKKGDGL-VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH----------SSCPLCRATIISF  191 (352)
Q Consensus       125 ~lp~~~~~~~~~~-~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----------~~CP~CR~~i~~~  191 (352)
                      .||-...++.+.. ..++.|.||+.+--.....+.|. |+|+||.+|...-|.+.          ..||+|..+|...
T Consensus      3470 CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3470 CLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred             cccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence            3444444433322 23567999998866556677786 99999999998766432          2599999987543

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.07  E-value=0.0039  Score=57.71  Aligned_cols=50  Identities=26%  Similarity=0.716  Sum_probs=42.2

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc--------CCCCcccccccccC
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS--------HSSCPLCRATIISF  191 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~CR~~i~~~  191 (352)
                      ...|..|-..+..++.+|+.  |-|+||..|++.|-..        ...||.|-.+|++.
T Consensus        50 ~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp  107 (299)
T KOG3970|consen   50 NPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP  107 (299)
T ss_pred             CCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence            45699999999999988875  9999999999999642        23599999998864

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.07  E-value=0.0045  Score=61.45  Aligned_cols=45  Identities=40%  Similarity=0.900  Sum_probs=36.4

Q ss_pred             CCCcccccccccC-cceeccCCCCCcccHhHHHHHHhcC--CCCccccc
Q 036833          141 SDCSVCLSEFQEH-ESLRLLPKCNHAFHLPCIDTWLKSH--SSCPLCRA  186 (352)
Q Consensus       141 ~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~  186 (352)
                      --|..|-+.+... +.+--|| |.|+||..|+...|.++  .+||.||+
T Consensus       366 L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  366 LYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            3599998887543 4567798 99999999999999654  47999984

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.90  E-value=0.0023  Score=56.35  Aligned_cols=30  Identities=23%  Similarity=0.748  Sum_probs=27.1

Q ss_pred             cCCCCCcccccccccCcceeccCCCCCcccH
Q 036833          138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHL  168 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~  168 (352)
                      .+..+|+|||+++..++.+..|| |-.+||+
T Consensus       175 ddkGECvICLEdL~~GdtIARLP-CLCIYHK  204 (205)
T KOG0801|consen  175 DDKGECVICLEDLEAGDTIARLP-CLCIYHK  204 (205)
T ss_pred             ccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence            34578999999999999999999 9999996

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=95.90  E-value=0.0041  Score=62.77  Aligned_cols=51  Identities=27%  Similarity=0.659  Sum_probs=41.3

Q ss_pred             cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833          138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF  191 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  191 (352)
                      .+...|++|...+.+.-..  + .|||.|+..|+..|+..+..||.|+..+...
T Consensus        19 ~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~   69 (391)
T KOG0297|consen   19 DENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQA   69 (391)
T ss_pred             cccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchh
Confidence            3456899999998774321  3 4999999999999998899999998877543

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.62  E-value=0.0023  Score=61.19  Aligned_cols=43  Identities=26%  Similarity=0.696  Sum_probs=34.3

Q ss_pred             CCCCcccccccccCcceeccCCCCCc-ccHhHHHHHHhcCCCCccccccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHA-FHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      ...|+||++...+   +.+|+ |||. -|..|-...    ..||+||+.|..
T Consensus       300 ~~LC~ICmDaP~D---CvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~r  343 (350)
T KOG4275|consen  300 RRLCAICMDAPRD---CVFLE-CGHMVTCTKCGKRM----NECPICRQYIVR  343 (350)
T ss_pred             HHHHHHHhcCCcc---eEEee-cCcEEeehhhcccc----ccCchHHHHHHH
Confidence            3569999998665   88998 9998 788886653    379999997753

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=95.49  E-value=0.0079  Score=44.26  Aligned_cols=41  Identities=24%  Similarity=0.678  Sum_probs=27.0

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc--CCCCcc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS--HSSCPL  183 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~  183 (352)
                      ...|+|.+..|++.  ++-. +|+|+|-...|..|++.  ...||+
T Consensus        11 ~~~CPiT~~~~~~P--V~s~-~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   11 SLKCPITLQPFEDP--VKSK-KCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             -SB-TTTSSB-SSE--EEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             ccCCCCcCChhhCC--cCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence            46799999999864  4444 49999999999999943  345998

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=95.22  E-value=0.05  Score=53.08  Aligned_cols=46  Identities=26%  Similarity=0.533  Sum_probs=35.9

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRAT  187 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~  187 (352)
                      ....|+||+.....+-.  +. .-|-+||..||-..+..+..||+=-.+
T Consensus       299 ~~~~CpvClk~r~Nptv--l~-vSGyVfCY~Ci~~Yv~~~~~CPVT~~p  344 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNPTV--LE-VSGYVFCYPCIFSYVVNYGHCPVTGYP  344 (357)
T ss_pred             ccccChhHHhccCCCce--EE-ecceEEeHHHHHHHHHhcCCCCccCCc
Confidence            34679999998776432  22 379999999999999999999986443

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=95.16  E-value=0.012  Score=41.52  Aligned_cols=41  Identities=29%  Similarity=0.955  Sum_probs=26.3

Q ss_pred             CcccccccccCcceeccC-CCCC---cccHhHHHHHHh--cCCCCccc
Q 036833          143 CSVCLSEFQEHESLRLLP-KCNH---AFHLPCIDTWLK--SHSSCPLC  184 (352)
Q Consensus       143 C~ICl~~~~~~~~~~~lp-~C~H---~FH~~Ci~~Wl~--~~~~CP~C  184 (352)
                      |-||++.-.... ..+.| .|.-   ..|..|+..|+.  .+.+|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            679999876655 33456 3443   689999999995  45679987

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.14  E-value=0.015  Score=41.28  Aligned_cols=45  Identities=27%  Similarity=0.678  Sum_probs=22.7

Q ss_pred             CcccccccccCcceeccC-CCCCcccHhHHHHHHh-cCCCCccccccc
Q 036833          143 CSVCLSEFQEHESLRLLP-KCNHAFHLPCIDTWLK-SHSSCPLCRATI  188 (352)
Q Consensus       143 C~ICl~~~~~~~~~~~lp-~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i  188 (352)
                      |++|.+++...+ ..++| .|++..+..|...-+. .+..||-||.+.
T Consensus         1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789999984433 34556 6889999999888875 467899999864

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.01  E-value=0.0083  Score=48.60  Aligned_cols=32  Identities=34%  Similarity=0.862  Sum_probs=26.4

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHH
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCID  172 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~  172 (352)
                      +...|++|-..+.. ....+.| |||+||..|+.
T Consensus        77 ~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~  108 (109)
T PF10367_consen   77 ESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK  108 (109)
T ss_pred             CCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence            35679999999977 4466778 99999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=94.66  E-value=0.018  Score=52.51  Aligned_cols=44  Identities=18%  Similarity=0.539  Sum_probs=37.0

Q ss_pred             CCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccc
Q 036833          141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI  188 (352)
Q Consensus       141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i  188 (352)
                      ..|.||-.+|+.   .+++ .|||.||..|...-++....|-+|.+..
T Consensus       197 F~C~iCKkdy~s---pvvt-~CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         197 FLCGICKKDYES---PVVT-ECGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             eeehhchhhccc---hhhh-hcchhHHHHHHHHHhccCCcceecchhh
Confidence            479999999987   3445 4999999999999888888999997654

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=94.62  E-value=0.0091  Score=58.15  Aligned_cols=49  Identities=24%  Similarity=0.599  Sum_probs=39.4

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      ...+|.+|-.-|.+..  .+. .|-|.||..||...|.....||.|...|-.
T Consensus        14 ~~itC~LC~GYliDAT--TI~-eCLHTFCkSCivk~l~~~~~CP~C~i~ih~   62 (331)
T KOG2660|consen   14 PHITCRLCGGYLIDAT--TIT-ECLHTFCKSCIVKYLEESKYCPTCDIVIHK   62 (331)
T ss_pred             cceehhhccceeecch--hHH-HHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence            4568999988876532  233 499999999999999989999999876643

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.33  E-value=0.038  Score=52.71  Aligned_cols=48  Identities=25%  Similarity=0.490  Sum_probs=36.6

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc--CCCCcccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS--HSSCPLCRATII  189 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~i~  189 (352)
                      ...+|++|-+.....  ....+ |+|+||.-||..-+..  ..+||.|-.+..
T Consensus       238 ~~~~C~~Cg~~PtiP--~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  238 SDTECPVCGEPPTIP--HVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CCceeeccCCCCCCC--eeecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            457899998875543  33454 9999999999998754  368999977664

>PHA02862 5L protein; Provisional

Probab=94.07  E-value=0.04  Score=47.84  Aligned_cols=46  Identities=22%  Similarity=0.593  Sum_probs=34.0

Q ss_pred             CCCcccccccccCcceeccCCCC-----CcccHhHHHHHHhc--CCCCcccccccccC
Q 036833          141 SDCSVCLSEFQEHESLRLLPKCN-----HAFHLPCIDTWLKS--HSSCPLCRATIISF  191 (352)
Q Consensus       141 ~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~Ci~~Wl~~--~~~CP~CR~~i~~~  191 (352)
                      +.|-||+++-.+.    .-| |.     ..-|..|+..|++.  +..|++|+.+....
T Consensus         3 diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik   55 (156)
T PHA02862          3 DICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK   55 (156)
T ss_pred             CEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence            5799999984332    345 44     45899999999954  45799999987543

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.94  E-value=0.043  Score=51.62  Aligned_cols=54  Identities=11%  Similarity=0.232  Sum_probs=46.9

Q ss_pred             CCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccCCCc
Q 036833          141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPAA  194 (352)
Q Consensus       141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~  194 (352)
                      ..|+||.+.+.....+.+|..|||+|+.+|....+.....||+|-.++.+.+..
T Consensus       222 yiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI  275 (303)
T KOG3039|consen  222 YICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII  275 (303)
T ss_pred             eecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence            459999999998888877777999999999999999889999998888765543

>PHA03096 p28-like protein; Provisional

Probab=93.93  E-value=0.03  Score=54.16  Aligned_cols=36  Identities=25%  Similarity=0.733  Sum_probs=28.6

Q ss_pred             CCCcccccccccCc----ceeccCCCCCcccHhHHHHHHh
Q 036833          141 SDCSVCLSEFQEHE----SLRLLPKCNHAFHLPCIDTWLK  176 (352)
Q Consensus       141 ~~C~ICl~~~~~~~----~~~~lp~C~H~FH~~Ci~~Wl~  176 (352)
                      -.|.||++......    .--+|+.|.|.|+..||..|-.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~  218 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMT  218 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHH
Confidence            47999999876432    2346788999999999999974

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=93.84  E-value=0.028  Score=60.66  Aligned_cols=49  Identities=29%  Similarity=0.790  Sum_probs=36.7

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-C------CCCccccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-H------SSCPLCRATI  188 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~------~~CP~CR~~i  188 (352)
                      ..+|.||++.+...+.+---..|-|+||..||..|-.. .      -.||.|....
T Consensus       191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~  246 (950)
T KOG1952|consen  191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS  246 (950)
T ss_pred             ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence            46899999999876655332248899999999999853 1      1499998443

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=93.68  E-value=0.068  Score=47.20  Aligned_cols=49  Identities=20%  Similarity=0.611  Sum_probs=35.5

Q ss_pred             CCCCCcccccccccCcceeccC-CCCC---cccHhHHHHHHhc--CCCCcccccccccC
Q 036833          139 EGSDCSVCLSEFQEHESLRLLP-KCNH---AFHLPCIDTWLKS--HSSCPLCRATIISF  191 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp-~C~H---~FH~~Ci~~Wl~~--~~~CP~CR~~i~~~  191 (352)
                      .+..|-||.++-..  .  ..| .|..   ..|..|+..|+..  ...|++|+++....
T Consensus         7 ~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~   61 (162)
T PHA02825          7 MDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK   61 (162)
T ss_pred             CCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence            45689999988532  2  245 3555   4699999999954  55799999987654

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.43  E-value=0.048  Score=52.58  Aligned_cols=48  Identities=31%  Similarity=0.702  Sum_probs=35.7

Q ss_pred             CCCcccccccccCcceeccCCCCCcccHhHHHHHH-hcCCCCccc-ccccccC
Q 036833          141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWL-KSHSSCPLC-RATIISF  191 (352)
Q Consensus       141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~C-R~~i~~~  191 (352)
                      ..|+.|-.-+...  ++ +|-|+|.||.+||...| .....||.| |+++...
T Consensus       275 LkCplc~~Llrnp--~k-T~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld  324 (427)
T COG5222         275 LKCPLCHCLLRNP--MK-TPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLD  324 (427)
T ss_pred             ccCcchhhhhhCc--cc-CccccchHHHHHHhhhhhhccccCCCcccccchhh
Confidence            4699998877663  33 35699999999999887 567789999 4455443

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.30  E-value=0.041  Score=55.15  Aligned_cols=36  Identities=28%  Similarity=0.820  Sum_probs=31.3

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHh
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK  176 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~  176 (352)
                      ...|.||+++..-..-...|| |+|+||..|+..++.
T Consensus       184 lf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~  219 (445)
T KOG1814|consen  184 LFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFT  219 (445)
T ss_pred             cccceeeehhhcCcceeeecc-cchHHHHHHHHHHHH
Confidence            457999999977657788898 999999999999985

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=93.24  E-value=0.04  Score=56.78  Aligned_cols=50  Identities=20%  Similarity=0.586  Sum_probs=37.4

Q ss_pred             cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHh-----cCCCCcccccccccC
Q 036833          138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK-----SHSSCPLCRATIISF  191 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~i~~~  191 (352)
                      .+..+|-+|-+.-++   .+... |.|.||..||..++.     .+.+||+|...+...
T Consensus       534 k~~~~C~lc~d~aed---~i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  534 KGEVECGLCHDPAED---YIESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             cCceeecccCChhhh---hHhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            345689999887544   44454 999999999988874     256899998776543

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.22  E-value=0.07  Score=52.57  Aligned_cols=49  Identities=27%  Similarity=0.615  Sum_probs=40.7

Q ss_pred             cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833          138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      .+++.|+||+-..-   ...+.| |+|.-|..||...|.+.+.|=.|++.+..
T Consensus       420 sEd~lCpICyA~pi---~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  420 SEDNLCPICYAGPI---NAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             cccccCcceecccc---hhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            46778999986633   356778 99999999999999999999999987753

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.20  E-value=0.071  Score=52.40  Aligned_cols=50  Identities=26%  Similarity=0.594  Sum_probs=38.5

Q ss_pred             cCCCCCcccccccccCcceeccCCCCCcccHhHHHHH--HhcCCCCcccccccccC
Q 036833          138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTW--LKSHSSCPLCRATIISF  191 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W--l~~~~~CP~CR~~i~~~  191 (352)
                      .+...|.||-+.+.-   ..++| |+|..|.-|--..  |...+.||+||+.+...
T Consensus        59 Een~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V  110 (493)
T COG5236          59 EENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTETEAV  110 (493)
T ss_pred             cccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccccceE
Confidence            345579999887654   56788 9999998897654  55678899999987554

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.95  E-value=0.031  Score=52.40  Aligned_cols=49  Identities=27%  Similarity=0.665  Sum_probs=34.7

Q ss_pred             CCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccCCCc
Q 036833          142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPAA  194 (352)
Q Consensus       142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~~  194 (352)
                      -|..|.---. ++...++- |.|+||..|...-..  ..||+|+..+......
T Consensus         5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~~~--~~C~lCkk~ir~i~l~   53 (233)
T KOG4739|consen    5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKASSP--DVCPLCKKSIRIIQLN   53 (233)
T ss_pred             EeccccccCC-CCceeeee-chhhhhhhhcccCCc--cccccccceeeeeecc
Confidence            3776655444 66677775 999999999776322  2899999987655433

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=92.78  E-value=0.076  Score=36.79  Aligned_cols=41  Identities=24%  Similarity=0.670  Sum_probs=23.5

Q ss_pred             CcccccccccCcceeccCCCCCcccHhHHHHHHhcCC--CCccc
Q 036833          143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS--SCPLC  184 (352)
Q Consensus       143 C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~C  184 (352)
                      |.+|-+-.-.|....-. .|+=.+|..|+..++....  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            67787776666555333 4888999999999997654  79988

; PDB: 3NW0_A 2CT0_A.

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.26  E-value=0.017  Score=57.47  Aligned_cols=52  Identities=19%  Similarity=0.559  Sum_probs=44.0

Q ss_pred             CCCCcccccccccC-cceeccCCCCCcccHhHHHHHHhcCCCCcccccccccCC
Q 036833          140 GSDCSVCLSEFQEH-ESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFP  192 (352)
Q Consensus       140 ~~~C~ICl~~~~~~-~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~  192 (352)
                      ...|+||...++.. +++..+- |||.+|..|+..||.....||.||+.+....
T Consensus       196 v~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~  248 (465)
T KOG0827|consen  196 VGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKNG  248 (465)
T ss_pred             HhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence            35799999999876 6676675 9999999999999988778999999886543

>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus []

Probab=92.26  E-value=0.15  Score=40.79  Aligned_cols=56  Identities=21%  Similarity=0.183  Sum_probs=40.5

Q ss_pred             eeecCCCceeecCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036833           27 SIYCPQGCYTIFPPPPPFNLEDEDDDSGTDFSPLIIAVIGILASAFILVTYYTIISKYC   85 (352)
Q Consensus        27 ~~~~p~~~~~~f~pppp~~l~~~~~~s~~~f~~lii~iigil~~~~llv~~~~i~~~~~   85 (352)
                      .++++...|.|++|..|..   ...++...|+.+..++|.+++++.++.+.|.++.|-|
T Consensus         7 ~~~~~~~~~~y~~P~~p~~---~p~ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLkDl   62 (91)
T PF01708_consen    7 QPFPSPQNYSYQTPRVPTA---APSSSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLKDL   62 (91)
T ss_pred             cCCCCcccccccCCCCCCC---CCCCCCCcceeEeeeeehHHHHHHHHHHHHHHHHHHH
Confidence            4556666677776665533   3456778899998888888888888888888777643

; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=92.06  E-value=0.081  Score=38.59  Aligned_cols=43  Identities=23%  Similarity=0.499  Sum_probs=31.4

Q ss_pred             CCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833          142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      .|..|...   +.+-.++| |+|+.+..|.+.+  +.+-||.|-+++..
T Consensus         9 ~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~   51 (55)
T PF14447_consen    9 PCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEF   51 (55)
T ss_pred             eEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccC
Confidence            45555444   33456788 9999999998876  55679999888754

>PF04641 Rtf2: Rtf2 RING-finger

Probab=92.01  E-value=0.15  Score=48.59  Aligned_cols=54  Identities=20%  Similarity=0.389  Sum_probs=41.6

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccCCC
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPA  193 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~  193 (352)
                      ....|+|...+|........|..|||+|-..++..- .....||+|-.++...+.
T Consensus       112 ~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~Di  165 (260)
T PF04641_consen  112 GRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDI  165 (260)
T ss_pred             ceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCE
Confidence            446799999999665555555559999999999997 335579999888875543

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.89  E-value=0.063  Score=51.73  Aligned_cols=44  Identities=23%  Similarity=0.473  Sum_probs=36.7

Q ss_pred             CCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccc
Q 036833          141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI  188 (352)
Q Consensus       141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i  188 (352)
                      ..|-||...|...   ++. +|+|.||..|...-++....|++|-+.+
T Consensus       242 f~c~icr~~f~~p---Vvt-~c~h~fc~~ca~~~~qk~~~c~vC~~~t  285 (313)
T KOG1813|consen  242 FKCFICRKYFYRP---VVT-KCGHYFCEVCALKPYQKGEKCYVCSQQT  285 (313)
T ss_pred             ccccccccccccc---hhh-cCCceeehhhhccccccCCcceeccccc
Confidence            4599999999873   334 5999999999999888888999997654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.65  E-value=0.075  Score=57.53  Aligned_cols=40  Identities=28%  Similarity=0.743  Sum_probs=30.9

Q ss_pred             CCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccc
Q 036833          141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRA  186 (352)
Q Consensus       141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~  186 (352)
                      ..|..|-..+..+-  ... .|+|.||.+|+.   .....||-|+.
T Consensus       841 skCs~C~~~LdlP~--VhF-~CgHsyHqhC~e---~~~~~CP~C~~  880 (933)
T KOG2114|consen  841 SKCSACEGTLDLPF--VHF-LCGHSYHQHCLE---DKEDKCPKCLP  880 (933)
T ss_pred             eeecccCCccccce--eee-ecccHHHHHhhc---cCcccCCccch
Confidence            57999988876642  333 399999999998   34557999987

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.68  E-value=0.25  Score=44.47  Aligned_cols=30  Identities=33%  Similarity=1.010  Sum_probs=24.1

Q ss_pred             CCCCcccHhHHHHHHhc----CC-------CCccccccccc
Q 036833          161 KCNHAFHLPCIDTWLKS----HS-------SCPLCRATIIS  190 (352)
Q Consensus       161 ~C~H~FH~~Ci~~Wl~~----~~-------~CP~CR~~i~~  190 (352)
                      .||.-||.-|+..||+.    .+       .||.|-.++..
T Consensus       189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial  229 (234)
T KOG3268|consen  189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL  229 (234)
T ss_pred             ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence            49999999999999963    11       49999887753

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.68  E-value=0.21  Score=48.07  Aligned_cols=47  Identities=28%  Similarity=0.793  Sum_probs=38.1

Q ss_pred             CCCcccccccccCcc---eeccCCCCCcccHhHHHHHHhc-CCCCccccccc
Q 036833          141 SDCSVCLSEFQEHES---LRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATI  188 (352)
Q Consensus       141 ~~C~ICl~~~~~~~~---~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i  188 (352)
                      ..|-||-++|...+.   .++|. |||.|+..|+...+.. ...||.||...
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~-c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLK-CGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccc-cCceehHhHHHHHhcCceeeccCCCCcc
Confidence            579999999988743   35664 9999999999988754 45699999986

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=88.44  E-value=0.29  Score=47.18  Aligned_cols=44  Identities=23%  Similarity=0.647  Sum_probs=36.6

Q ss_pred             CCcccccccccCcc-eeccCCCCCcccHhHHHHHHhcCCCCccccc
Q 036833          142 DCSVCLSEFQEHES-LRLLPKCNHAFHLPCIDTWLKSHSSCPLCRA  186 (352)
Q Consensus       142 ~C~ICl~~~~~~~~-~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~  186 (352)
                      .|+||.+.+-.... +..++ |||..|..|+......+.+||+|.+
T Consensus       160 ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  160 NCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             CCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence            49999998765543 55676 9999999999999877799999987

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=88.05  E-value=0.31  Score=47.92  Aligned_cols=59  Identities=15%  Similarity=0.332  Sum_probs=39.7

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHh-cCCCCcccccccccCCCcCCC
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK-SHSSCPLCRATIISFPAAQAS  197 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~~~~~~~  197 (352)
                      +.+-|+.|++++...++-..--.||...|.-|....-+ -+-.||-||+...+.+.....
T Consensus        13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv~~~~   72 (480)
T COG5175          13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENVRYVT   72 (480)
T ss_pred             ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccceeEEe
Confidence            45569999999988775433114887766666554432 245799999988877665443

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=87.55  E-value=0.59  Score=34.06  Aligned_cols=34  Identities=26%  Similarity=0.842  Sum_probs=29.3

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHH
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDT  173 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~  173 (352)
                      ...|.+|-+.|..++.+.+-|.|+-.+|..|...
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            4579999999997777888888999999999654

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.37  E-value=0.26  Score=53.78  Aligned_cols=35  Identities=23%  Similarity=0.629  Sum_probs=28.3

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHH
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWL  175 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl  175 (352)
                      .++.|.+|...+... .-.+.| |||.||.+|+..-.
T Consensus       816 p~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  816 PQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV  850 (911)
T ss_pred             CccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence            457899999887654 456777 99999999998765

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.22  E-value=0.24  Score=45.82  Aligned_cols=39  Identities=31%  Similarity=0.763  Sum_probs=30.2

Q ss_pred             CcccccccccCcceeccCCCCCc-ccHhHHHHHHhcCCCCcccccccc
Q 036833          143 CSVCLSEFQEHESLRLLPKCNHA-FHLPCIDTWLKSHSSCPLCRATII  189 (352)
Q Consensus       143 C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~  189 (352)
                      |-.|-+.   +..+.++| |.|. +|..|-..    -..||+|+....
T Consensus       161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~  200 (207)
T KOG1100|consen  161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT  200 (207)
T ss_pred             ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence            8888766   44588999 9998 89999665    246999987654

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=87.20  E-value=0.35  Score=51.96  Aligned_cols=23  Identities=30%  Similarity=0.933  Sum_probs=20.9

Q ss_pred             CCCCcccHhHHHHHHhcCCCCcc
Q 036833          161 KCNHAFHLPCIDTWLKSHSSCPL  183 (352)
Q Consensus       161 ~C~H~FH~~Ci~~Wl~~~~~CP~  183 (352)
                      .|+|+.|..|...|+.....||.
T Consensus      1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             cccccccHHHHHHHHhcCCcCCC
Confidence            39999999999999999889984

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=87.05  E-value=1.4  Score=45.46  Aligned_cols=13  Identities=15%  Similarity=0.258  Sum_probs=9.0

Q ss_pred             cHhHHHHHHhcCC
Q 036833          167 HLPCIDTWLKSHS  179 (352)
Q Consensus       167 H~~Ci~~Wl~~~~  179 (352)
                      +..|+..||+.|.
T Consensus       291 ~kGsL~dyL~~nt  303 (534)
T KOG3653|consen  291 PKGSLCDYLKANT  303 (534)
T ss_pred             cCCcHHHHHHhcc
Confidence            3567888887654

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=86.55  E-value=0.29  Score=52.84  Aligned_cols=49  Identities=24%  Similarity=0.673  Sum_probs=38.0

Q ss_pred             CCCcccccccccCcceeccCCCCCcccHhHHHHHHhc--CCCCcccccccccCCCc
Q 036833          141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS--HSSCPLCRATIISFPAA  194 (352)
Q Consensus       141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~i~~~~~~  194 (352)
                      ..|.||++    .+.+.+.+ |+|.|+..|+..-+..  ...||+||..+.+...-
T Consensus       455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~  505 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLL  505 (674)
T ss_pred             cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHHHh
Confidence            68999999    33466666 9999999999988743  33599999988766544

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=86.45  E-value=0.78  Score=40.58  Aligned_cols=36  Identities=22%  Similarity=0.570  Sum_probs=23.4

Q ss_pred             CCCCcccccccccCc---------ceeccCCCCCc-ccHhHHHHHHh
Q 036833          140 GSDCSVCLSEFQEHE---------SLRLLPKCNHA-FHLPCIDTWLK  176 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~---------~~~~lp~C~H~-FH~~Ci~~Wl~  176 (352)
                      +..|+|||+-.....         .+|-.. |+-. -|..|++..-+
T Consensus         2 d~~CpICme~PHNAVLLlCSS~~kgcRpym-c~Ts~rhSNCLdqfkk   47 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYM-CDTSYRHSNCLDQFKK   47 (162)
T ss_pred             CccCceeccCCCceEEEEeccccCCccccc-cCCccchhHHHHHHHH
Confidence            457999999865532         222222 5544 68899998754

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=85.97  E-value=0.8  Score=45.77  Aligned_cols=28  Identities=36%  Similarity=1.017  Sum_probs=20.9

Q ss_pred             CCCcccHhHHHHHHhcC-------------CCCcccccccc
Q 036833          162 CNHAFHLPCIDTWLKSH-------------SSCPLCRATII  189 (352)
Q Consensus       162 C~H~FH~~Ci~~Wl~~~-------------~~CP~CR~~i~  189 (352)
                      |.-.+|.+|+.+|+..+             -.||.||+.+-
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC  351 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC  351 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence            44557889999999432             25999999764

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.31  E-value=0.34  Score=51.26  Aligned_cols=44  Identities=23%  Similarity=0.512  Sum_probs=32.6

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRA  186 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~  186 (352)
                      .-.|.||+..|-....+-+...|||..|.+|+.....  .+|| |.+
T Consensus        11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp-~~~   54 (861)
T KOG3161|consen   11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP-TKR   54 (861)
T ss_pred             HhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC-CCc
Confidence            3469999999877554433336999999999998754  5798 543

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=84.90  E-value=0.32  Score=55.02  Aligned_cols=46  Identities=26%  Similarity=0.700  Sum_probs=37.2

Q ss_pred             CCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833          141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII  189 (352)
Q Consensus       141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  189 (352)
                      ..|.||++.+..-..+ .  .|+|.++..|+..|+..+..||+|.....
T Consensus      1154 ~~c~ic~dil~~~~~I-~--~cgh~~c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGI-A--GCGHEPCCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred             cchHHHHHHHHhcCCe-e--eechhHhhhHHHHHHHHhccCcchhhhhh
Confidence            4699999998753222 2  49999999999999999999999985443

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=84.78  E-value=0.42  Score=46.51  Aligned_cols=42  Identities=33%  Similarity=0.771  Sum_probs=30.5

Q ss_pred             CCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccc
Q 036833          142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI  188 (352)
Q Consensus       142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i  188 (352)
                      .|.-|--.+..  .-|+.| |.|+||.+|...  ...+.||.|-..|
T Consensus        92 fCd~Cd~PI~I--YGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V  133 (389)
T KOG2932|consen   92 FCDRCDFPIAI--YGRMIP-CKHVFCLECARS--DSDKICPLCDDRV  133 (389)
T ss_pred             eecccCCccee--eecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence            47778655443  346788 999999999765  3456899996655

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=82.30  E-value=2.2  Score=36.33  Aligned_cols=20  Identities=15%  Similarity=0.363  Sum_probs=11.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q 036833           59 PLIIAVIGILASAFILVTYY   78 (352)
Q Consensus        59 ~lii~iigil~~~~llv~~~   78 (352)
                      .++.+++|+++++++++++.
T Consensus        65 ~i~~Ii~gv~aGvIg~Illi   84 (122)
T PF01102_consen   65 AIIGIIFGVMAGVIGIILLI   84 (122)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeehhHHHHHHHHHHHHHH
Confidence            44556666666665554433

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=80.56  E-value=3.7  Score=27.74  Aligned_cols=26  Identities=12%  Similarity=0.220  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036833           61 IIAVIGILASAFILVTYYTIISKYCK   86 (352)
Q Consensus        61 ii~iigil~~~~llv~~~~i~~~~~~   86 (352)
                      +.++.|++++++++++..+++..+++
T Consensus         6 IaIIv~V~vg~~iiii~~~~YaCcyk   31 (38)
T PF02439_consen    6 IAIIVAVVVGMAIIIICMFYYACCYK   31 (38)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34455555555555554444443333

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	352
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		1e-14
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		4e-09
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		1e-07
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		1e-07
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		5e-07
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		1e-05
2ecl_A	81	Solution Structure Of The Ring Domain Of The Human		3e-04

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII 189
           +G +C+VCL+E ++ E  R LP+C H FH  C+D WL SHS+CPLCR T++
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRA 186
           E + C VC+ +F+  + LR+LP CNH FH  C+D WLK++ +CP+CRA
Sbjct: 22  EQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRA 68

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188
           C++CLS  +E E +R LP C H FH  C+D WL ++  CP+CR  I
Sbjct: 17  CTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDI 61

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188
           G +C VC  ++   ES+R LP CNH FH  CI  WL+ H SCP+CR ++
Sbjct: 15  GLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPAAQASAP 199
           C+VCL +F+  + L + P C HAFH  C+  WL+    CPLC   ++    AQ S P
Sbjct: 18  CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL--AQLSGP 71

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCR 185
           C +C SE+ + +    LP C+H FH PC+  WL+   +CP+CR
Sbjct: 43  CPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCR 84

>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring-Box Protein 2 Length = 81

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCR 185
           C  C +E ++ + + +  +CNH+FH  C+  W+K ++ CPLC+
Sbjct: 29  CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	352
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	1e-32
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	1e-30
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	2e-26
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	6e-25
2ect_A	78	Ring finger protein 126; metal binding protein, st	7e-23
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	1e-22
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	3e-19
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	6e-19
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	2e-17
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	2e-15
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	5e-15
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	3e-14
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	4e-13
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	1e-12
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	2e-12
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	6e-12
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	6e-09
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	8e-09
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	9e-09
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	1e-08
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	2e-08
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	4e-08
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	1e-06
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	8e-08
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	1e-07
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	1e-07
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	1e-07
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	1e-07
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	8e-07
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	8e-07
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	6e-06
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	1e-05
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	2e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	3e-05
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	4e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	6e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	7e-05
1z6u_A	150	NP95-like ring finger protein isoform B; structura	2e-04
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	2e-04
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	2e-04
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	3e-04
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	4e-04
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	5e-04
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	5e-04

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score =  115 bits (291), Expect = 1e-32
 Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 121 ALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSS 180
                +   ++   +   E + C VC+ +F+  + LR+LP CNH FH  C+D WLK++ +
Sbjct: 4   GSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRT 62

Query: 181 CPLCRATIISFPA 193
           CP+CRA       
Sbjct: 63  CPICRADSGPSSG 75

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score =  109 bits (276), Expect = 1e-30
 Identities = 27/54 (50%), Positives = 39/54 (72%)

Query: 136 GLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII 189
            + +G +C+VCL+E ++ E  R LP+C H FH  C+D WL SHS+CPLCR T++
Sbjct: 1   AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 99.0 bits (247), Expect = 2e-26
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 3/69 (4%)

Query: 130 KYKKGDGLVEGSD--CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRAT 187
           K    +G  E ++  C++CLS  +E E +R LP C H FH  C+D WL ++  CP+CR  
Sbjct: 2   KQDGEEGTEEDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVD 60

Query: 188 IISFPAAQA 196
           I +   +++
Sbjct: 61  IEAQLPSES 69

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 95.9 bits (239), Expect = 6e-25
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 101 DQMSANDQAWQLGNNVGLDEALIKSITVCKYKKGDGLV-EGSDCSVCLSEFQEHESLRLL 159
                +     +  N    +  I ++      +  G V +   C +C SE+ + +    L
Sbjct: 2   GHHHHHHS--HMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATEL 59

Query: 160 PKCNHAFHLPCIDTWLKSHSSCPLCRA 186
           P C+H FH PC+  WL+   +CP+CR 
Sbjct: 60  P-CHHYFHKPCVSIWLQKSGTCPVCRC 85

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 89.8 bits (223), Expect = 7e-23
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPAAQASA 198
            G +C VC  ++   ES+R LP CNH FH  CI  WL+ H SCP+CR ++        + 
Sbjct: 14  SGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTG-QNTATNP 71

Query: 199 PGE 201
           PG 
Sbjct: 72  PGL 74

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 89.1 bits (221), Expect = 1e-22
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPAAQASA 198
               C+VCL +F+  + L + P C HAFH  C+  WL+    CPLC   ++        +
Sbjct: 14  LHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLSGPS 72

Query: 199 PG 200
            G
Sbjct: 73  SG 74

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 79.9 bits (197), Expect = 3e-19
 Identities = 15/46 (32%), Positives = 28/46 (60%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188
           C  C +E ++ + + +  +CNH+FH  C+  W+K ++ CPLC+   
Sbjct: 29  CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDW 74

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 78.5 bits (194), Expect = 6e-19
 Identities = 14/48 (29%), Positives = 19/48 (39%)

Query: 141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188
           S C +CL +      +  +  C H  H  C +  LK    CPLC    
Sbjct: 6   SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 74.7 bits (184), Expect = 2e-17
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 132 KKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF 191
            +   L +  +C +C+    +     +LP C H+F   CID W   H +CP+CR  +   
Sbjct: 7   GRVKQLTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61

Query: 192 PAAQASAPG 200
             +   + G
Sbjct: 62  NESSGPSSG 70

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 69.4 bits (170), Expect = 2e-15
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF 191
               C +CL +   +     LP C HAF   CI  W++ + +CPLC+  + S 
Sbjct: 4   VAERCPICLEDPSNYS--MALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESV 53

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 69.5 bits (169), Expect = 5e-15
 Identities = 17/58 (29%), Positives = 22/58 (37%)

Query: 128 VCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCR 185
            C   +   +    +C    +     E       CNHAFH  CI  WLK+   CPL  
Sbjct: 39  NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 96

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 67.6 bits (164), Expect = 3e-14
 Identities = 17/58 (29%), Positives = 22/58 (37%)

Query: 128 VCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCR 185
            C   +   +    +C    +     E       CNHAFH  CI  WLK+   CPL  
Sbjct: 50  NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 107

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 63.0 bits (153), Expect = 4e-13
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 142 DCSVCLSEFQEHESLRLLP---KCNHAFHLPCIDTWLKSHSSCPLCRATI 188
            C +C+  + E      L    +C H F   C+   LK+ ++CP CR  I
Sbjct: 17  SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 61.7 bits (150), Expect = 1e-12
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 143 CSVCLSEFQEHESLRLLP---KCNHAFHLPCIDTWLKSHSSCPLCRATI 188
           C +C+  + E      L    +C H F   C+   LK+ ++CP CR  I
Sbjct: 6   CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 61.0 bits (148), Expect = 2e-12
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 143 CSVCLSEFQEHESLRLLP---KCNHAFHLPCIDTWLKSHSSCPLCRATI 188
           C +C+  + E      L    +C H F   C+   LK+ ++CP CR  I
Sbjct: 13  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 60.7 bits (147), Expect = 6e-12
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 130 KYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWL-KSHSSCPLCRATI 188
             +  + + E   C +C+ + ++    RL P C+      CI  WL +  + CP CRA +
Sbjct: 12  DEQSVESIAEVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPL 68

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 56.0 bits (134), Expect = 6e-09
 Identities = 20/111 (18%), Positives = 33/111 (29%), Gaps = 22/111 (19%)

Query: 100 RDQMSANDQAWQLGNNVG------LDEALIKSITVCKYKKGDGLVEGS-DCSVCLSEFQE 152
           R  +S     W    N+        D             K D        C++C +   +
Sbjct: 261 RHVLSDGLSNWDSEMNIHKNLLRMFDLCYFPMPDWSDGPKLDEEDNEELRCNICFAYRLD 320

Query: 153 HESLRLL----PKCNHAFHLPCIDTWLKS-----------HSSCPLCRATI 188
              + L+     KC    H  C++ W K+              CP C+A +
Sbjct: 321 GGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKL 371

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 51.0 bits (122), Expect = 8e-09
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 4/47 (8%)

Query: 142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188
           +C++CL       SL     C H F   C+         C LCR  I
Sbjct: 17  ECAICLQTCVHPVSL----PCKHVFCYLCVKGASWLGKRCALCRQEI 59

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 50.5 bits (121), Expect = 9e-09
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 3/46 (6%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188
           CS+C     +  ++    +C H F   CI       + CP C   +
Sbjct: 18  CSICKGYLIDATTI---TECLHTFCKSCIVRHFYYSNRCPKCNIVV 60

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 4/44 (9%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRA 186
           C +C   FQ         KC H F   C     ++   C +C  
Sbjct: 18  CFICRQAFQNPVVT----KCRHYFCESCALEHFRATPRCYICDQ 57

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH--SSCPLCRATI 188
            C++C S   + +S      C    HLPC+  + +S+    CP C    
Sbjct: 17  ICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 62

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 50.6 bits (120), Expect = 4e-08
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 143 CSVCLSEFQEHESLRLLP---KCNHAFHLPCIDTWLKSHSSCPLCRATI 188
           C +C+  + E      L    +C H F   C+   LK+ ++CP CR  I
Sbjct: 10  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 46.3 bits (109), Expect = 1e-06
 Identities = 20/81 (24%), Positives = 30/81 (37%)

Query: 108 QAWQLGNNVGLDEALIKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFH 167
            + +  N        I          G G V    C    SE  ++  L +  +C H F 
Sbjct: 43  DSLKNANTCPTCRKKINHKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFC 102

Query: 168 LPCIDTWLKSHSSCPLCRATI 188
             C+   LK+ ++CP CR  I
Sbjct: 103 SQCLRDSLKNANTCPTCRKKI 123

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 49.5 bits (117), Expect = 8e-08
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 19/65 (29%)

Query: 142 DCSVCLSEFQEH--------------ESLRLLPKCNHAFHLPCIDTWLKSHS-----SCP 182
           DC +C+ +                    +  L KC+HAFHL C+     + +      CP
Sbjct: 27  DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86

Query: 183 LCRAT 187
            C+  
Sbjct: 87  SCKTI 91

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 49.7 bits (118), Expect = 1e-07
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFP 192
           C +C   F E     +   C H+F   CI+ W+K    CP+CR  I S  
Sbjct: 67  CIICSEYFIE----AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 112

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188
           C +C   F       ++P+C+H +   CI  +L   + CP C  T+
Sbjct: 25  CGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 51.7 bits (123), Expect = 1e-07
 Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS-SCPLCRATI 188
               C +C    ++    ++ P C H     C+ +W +S    CP CR  I
Sbjct: 331 TFQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEI 377

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 48.3 bits (115), Expect = 1e-07
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188
           C +C   F +  ++    +C H+F   CI  +L++   CP+C   +
Sbjct: 18  CVLCGGYFIDATTI---IECLHSFCKTCIVRYLETSKYCPICDVQV 60

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 45.1 bits (107), Expect = 8e-07
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWL--KSHSSCPLCRATIISFPA 193
           C +C     +     ++P C +++   CI T L      +CP C    +S  A
Sbjct: 18  CLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 46.5 bits (110), Expect = 8e-07
 Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 5/58 (8%)

Query: 137 LVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS-SCPLCRATIISFPA 193
           + E   C  C        +      C H     C+D   ++   SCP CR  +    A
Sbjct: 49  VEETFQCICCQELVFRPITT----VCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYA 102

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWL--KSHSSCPLCRATIISFP 192
           C +C     +     ++P C +++   CI T L      +CP C    +S  
Sbjct: 16  CLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 64

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 5/45 (11%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRAT 187
           CS C +  +E   L     C H F   C+   +   + CP+C   
Sbjct: 25  CSRCTNILREPVCL---GGCEHIFCSNCVSDCIG--TGCPVCYTP 64

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 143 CSVCLSEFQEHESL-RLLPKCNHAFHLPCIDTWLKSHS---SCPLCRATI 188
           C +C+  F E +   +LL  C H     C++  L S      CP C    
Sbjct: 18  CPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKIT 66

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSS--CPLCRA 186
            C++C S   + +S      C    HLPC+  + +S++   CP C  
Sbjct: 182 ICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCND 225

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 39.7 bits (93), Expect = 4e-05
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 7/44 (15%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRA 186
           C  C +E +     +LLP C H     C++    S   CP+C+A
Sbjct: 9   CQQCQAEAKCP---KLLP-CLHTLCSGCLE---ASGMQCPICQA 45

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 41.1 bits (96), Expect = 6e-05
 Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 137 LVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCI-DTWLKSHSSCPLCRATIISFPAAQ 195
            +    C +C+    E  +L     CNH    PC   T  K+   CP CR  + S+    
Sbjct: 12  SLSECQCGICMEILVEPVTLP----CNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYH 67

Query: 196 A 196
            
Sbjct: 68  T 68

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 39.4 bits (92), Expect = 7e-05
 Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 5/48 (10%)

Query: 142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS-SCPLCRATI 188
            C  C              +C H F   C+   L S S  C  C+ +I
Sbjct: 17  KCEKCHLVLCS----PKQTECGHRFCESCMAALLSSSSPKCTACQESI 60

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 5/52 (9%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS-SCPLCRATIISFPA 193
           C  C     +  +     +C H     C+    K+   SCP CR  +     
Sbjct: 81  CVCCQELVYQPVTT----ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYI 128

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 13/51 (25%)

Query: 143 CSVCLSEFQEHESLRLLP---KCNHAFHLPCIDTWL---KSHSSCPLCRAT 187
           C +CL   +E       P   KC+H F   C+   L   K  S CPLC+  
Sbjct: 24  CPICLELIKE-------PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKND 67

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 7/48 (14%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS---HSSCPLCRAT 187
           C +CL   Q+  ++     C H F L CI    ++      CPLC+ +
Sbjct: 23  CPICLDILQKPVTI----DCGHNFCLKCITQIGETSCGFFKCPLCKTS 66

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 38.2 bits (88), Expect = 3e-04
 Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 1/51 (1%)

Query: 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATI 188
           +  +C +C+   +  +       C +     C        +  CP CR   
Sbjct: 10  DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 60

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 10/51 (19%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH------SSCPLCRAT 187
           C +CL   +E  S      CNH+F   CI    +S+       +CP+CR  
Sbjct: 22  CPICLELLKEPVSA----DCNHSFCRACITLNYESNRNTDGKGNCPVCRVP 68

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 138 VEGSDCSVCLSEFQEHESLRLL-PKCNHAFHLPCIDTWLKSHS-SCPLCRATI 188
           ++   C  C +    + SL+L+   C H     C+D      + +CP C   +
Sbjct: 1   MDDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH-SSCPLCRATIISFP 192
           C +CL   +         +C H F   CI T L+S    CP CR  ++S  
Sbjct: 57  CPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKR 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	352
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.6
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.58
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.45
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.45
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.43
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.42
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.33
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.33
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.32
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.28
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.26
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.26
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.22
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.21
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.21
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.19
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.18
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.16
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.15
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.14
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.13
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.08
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.08
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.06
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.05
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.05
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.98
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.97
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.97
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.97
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	98.97
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.94
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.93
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.93
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.91
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.89
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.89
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.89
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.88
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.85
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.84
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.83
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.77
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.77
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.76
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.76
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.73
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.72
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.67
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.66
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.63
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.63
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.58
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.56
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.56
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.56
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.55
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.54
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.41
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.39
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.39
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.38
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.38
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.33
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.31
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.24
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.17
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.03
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.97
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.9
3nw0_A	238	Non-structural maintenance of chromosomes element	97.76
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.71
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	92.95
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	91.95
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	90.26
2klu_A	70	T-cell surface glycoprotein CD4; cell membrane, di	83.76
1we9_A	64	PHD finger family protein; structural genomics, PH	82.19
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	81.28
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	80.77

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.60  E-value=7.1e-16  Score=122.39  Aligned_cols=77  Identities=27%  Similarity=0.653  Sum_probs=67.8

Q ss_pred             cCCCCCCHHHHhhcceeEeecCCC-CcCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833          113 GNNVGLDEALIKSITVCKYKKGDG-LVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       113 ~~~~gl~~~~i~~lp~~~~~~~~~-~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      ....+++++.++.||.+++..... ..+...|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||+.+..
T Consensus        12 ~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           12 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             cCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            567789999999999999987553 345668999999999999899998 99999999999999999999999998754

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=5.6e-16  Score=118.20  Aligned_cols=68  Identities=35%  Similarity=0.864  Sum_probs=59.7

Q ss_pred             HhhcceeEeecCCCCcCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833          123 IKSITVCKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF  191 (352)
Q Consensus       123 i~~lp~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  191 (352)
                      ++.||.++++......+...|+||++.|..++.++.++ |+|+||..||..|++.+.+||+||+.+...
T Consensus         6 i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A            6 SGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             CSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             HhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            45688888887666667788999999999988889998 999999999999999999999999988653

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.45  E-value=3.1e-14  Score=101.74  Aligned_cols=51  Identities=53%  Similarity=1.305  Sum_probs=46.1

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII  189 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  189 (352)
                      +..+|+||++.|..++.+..++.|+|.||..||..|++.+.+||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            456899999999998888888779999999999999999999999999874

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=7e-14  Score=105.98  Aligned_cols=54  Identities=35%  Similarity=0.925  Sum_probs=48.2

Q ss_pred             cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccCC
Q 036833          138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFP  192 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~  192 (352)
                      .....|+||++.|..+..+++++ |+|.||..||..|++.+.+||+||+.+....
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~   66 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLA   66 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCC
T ss_pred             CCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccccc
Confidence            34668999999999988888898 9999999999999998889999999987643

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.43  E-value=1.2e-13  Score=105.80  Aligned_cols=55  Identities=44%  Similarity=0.988  Sum_probs=48.8

Q ss_pred             cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccCCC
Q 036833          138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPA  193 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~~  193 (352)
                      .+...|+||++.|..+..++.++ |+|.||..||..|+..+.+||+||+.+.....
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT   67 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred             CCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence            34578999999999888888898 99999999999999988999999999876543

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.42  E-value=1.3e-13  Score=103.00  Aligned_cols=52  Identities=42%  Similarity=1.004  Sum_probs=46.9

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF  191 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  191 (352)
                      ....|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||+.+...
T Consensus        13 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A           13 TEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ   64 (69)
T ss_dssp             CCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred             CCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence            4568999999998888888898 999999999999999889999999998654

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=2.7e-13  Score=105.24  Aligned_cols=52  Identities=29%  Similarity=0.854  Sum_probs=42.0

Q ss_pred             CCCCCccccccccc-----------CcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833          139 EGSDCSVCLSEFQE-----------HESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       139 ~~~~C~ICl~~~~~-----------~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      ++..|+||++.|..           ++.++.++.|+|.||..||..||..+.+||+||+++..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence            34568888888754           44465665699999999999999999999999998754

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.33  E-value=7.4e-13  Score=94.34  Aligned_cols=50  Identities=32%  Similarity=0.798  Sum_probs=42.6

Q ss_pred             CCCCCcccccccccCc-ceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833          139 EGSDCSVCLSEFQEHE-SLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII  189 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~-~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  189 (352)
                      +...|+||++.|..++ .+++++ |+|.||..||..|+..+.+||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            4568999999996543 467777 9999999999999998899999998763

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.32  E-value=6e-13  Score=109.06  Aligned_cols=52  Identities=29%  Similarity=0.623  Sum_probs=41.9

Q ss_pred             CCCCcccccccccCc---------------ceeccCCCCCcccHhHHHHHHh-----cCCCCcccccccccCC
Q 036833          140 GSDCSVCLSEFQEHE---------------SLRLLPKCNHAFHLPCIDTWLK-----SHSSCPLCRATIISFP  192 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~i~~~~  192 (352)
                      ...|+|||+.|..+.               .+++++ |+|+||..||..|+.     .+.+||+||+.+....
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~   96 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT   96 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence            458999999997643               334677 999999999999993     4678999999886553

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.28  E-value=1.6e-12  Score=106.38  Aligned_cols=50  Identities=32%  Similarity=0.723  Sum_probs=42.3

Q ss_pred             CCCCCcccccccccCc---------------ceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833          139 EGSDCSVCLSEFQEHE---------------SLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII  189 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  189 (352)
                      +.+.|+||++.|...-               .+++++ |+|.||..||..||..+.+||+||+.+.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            4578999999997541               255676 9999999999999999999999999864

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=2.5e-12  Score=95.43  Aligned_cols=51  Identities=27%  Similarity=0.681  Sum_probs=43.1

Q ss_pred             cCCCCCcccccccccC----cceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833          138 VEGSDCSVCLSEFQEH----ESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII  189 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  189 (352)
                      .+...|+||++.|...    ..+.+++ |+|.||..||..|+..+..||+||+.+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   67 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKIN   67 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccC
Confidence            3467899999999764    3346777 9999999999999998899999999874

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.26  E-value=2.5e-12  Score=96.20  Aligned_cols=52  Identities=27%  Similarity=0.652  Sum_probs=44.1

Q ss_pred             CCCCCcccccccccC----cceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833          139 EGSDCSVCLSEFQEH----ESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF  191 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  191 (352)
                      +...|+||++.|...    ..+..++ |||.||..||..|+..+.+||+||+.+...
T Consensus         9 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   64 (71)
T 3ng2_A            9 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK   64 (71)
T ss_dssp             TCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred             CCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence            456899999998763    4446777 999999999999999989999999988654

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.22  E-value=3.7e-12  Score=93.12  Aligned_cols=51  Identities=27%  Similarity=0.654  Sum_probs=43.3

Q ss_pred             CCCCcccccccccC----cceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833          140 GSDCSVCLSEFQEH----ESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF  191 (352)
Q Consensus       140 ~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  191 (352)
                      ..+|+||++.+...    ..+..++ |||.||..||..|+..+.+||+||+.+...
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   57 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK   57 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred             CCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence            46899999999763    3446777 999999999999999889999999988654

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=9.5e-12  Score=96.71  Aligned_cols=52  Identities=31%  Similarity=0.777  Sum_probs=43.6

Q ss_pred             CCCCCcccccccccCcceeccCCCC-----CcccHhHHHHHHhcC--CCCcccccccccCC
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCN-----HAFHLPCIDTWLKSH--SSCPLCRATIISFP  192 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~i~~~~  192 (352)
                      +...|.||+++|..++.+ ++| |+     |.||..||+.||..+  .+||+||+.+....
T Consensus        14 ~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET   72 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred             CCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence            457899999999877766 588 86     999999999999764  58999999986543

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=4.9e-12  Score=94.66  Aligned_cols=49  Identities=33%  Similarity=0.973  Sum_probs=42.8

Q ss_pred             cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833          138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF  191 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  191 (352)
                      .+...|+||++.+..    .+++ |+|.||..||..|+..+..||+||+.+...
T Consensus        13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   61 (70)
T 2ecn_A           13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA   61 (70)
T ss_dssp             CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred             CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence            346789999999876    5677 999999999999999889999999988654

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=5e-12  Score=95.18  Aligned_cols=50  Identities=28%  Similarity=0.549  Sum_probs=42.8

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccCC
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFP  192 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~  192 (352)
                      +...|+||++.+..   ...++ |+|.||..||..|+..+..||+||+.+....
T Consensus        14 ~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   63 (71)
T 2d8t_A           14 TVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDF   63 (71)
T ss_dssp             SCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred             CCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence            45689999999866   45667 9999999999999998899999999986543

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=2.8e-11  Score=91.30  Aligned_cols=53  Identities=23%  Similarity=0.484  Sum_probs=43.6

Q ss_pred             CcCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccCC
Q 036833          137 LVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFP  192 (352)
Q Consensus       137 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~  192 (352)
                      ..+...|+||++.|..  .+.+++ |+|.||..||..|+..+..||+||+.+....
T Consensus        12 ~~~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   64 (72)
T 2djb_A           12 LTPYILCSICKGYLID--ATTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ   64 (72)
T ss_dssp             CCGGGSCTTTSSCCSS--CEECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred             cCCCCCCCCCChHHHC--cCEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence            3345689999999876  244446 9999999999999988889999999986543

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.16  E-value=1.4e-11  Score=91.57  Aligned_cols=49  Identities=35%  Similarity=0.905  Sum_probs=41.9

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      ....|+||++.+..  ....++ |||.||..|+..|+..+.+||+||+.+..
T Consensus         4 ~~~~C~IC~~~~~~--~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccC--CcEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence            35689999999865  246777 99999999999999988999999998753

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.15  E-value=3.7e-12  Score=105.99  Aligned_cols=51  Identities=33%  Similarity=0.726  Sum_probs=0.9

Q ss_pred             CCCCCcccccccccC-------------cc--eeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833          139 EGSDCSVCLSEFQEH-------------ES--LRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~-------------~~--~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      ..+.|+||++.|...             +.  +..++ |+|.||..||..||..+.+||+||+++..
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~  112 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF  112 (117)
T ss_dssp             CC-----------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence            356899999999752             22  23345 99999999999999999999999998643

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=3.8e-11  Score=93.30  Aligned_cols=54  Identities=30%  Similarity=0.688  Sum_probs=44.9

Q ss_pred             CcCCCCCcccccccccCcc-eeccCCCCCcccHhHHHHHHhcC---CCCcccccccccC
Q 036833          137 LVEGSDCSVCLSEFQEHES-LRLLPKCNHAFHLPCIDTWLKSH---SSCPLCRATIISF  191 (352)
Q Consensus       137 ~~~~~~C~ICl~~~~~~~~-~~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~i~~~  191 (352)
                      ..+...|+||++.|...+. .++++ |||.||..||..|+..+   ..||+||+.+...
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            3455789999999987664 66777 99999999999999875   6899999987654

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.13  E-value=4.1e-11  Score=91.75  Aligned_cols=50  Identities=26%  Similarity=0.620  Sum_probs=42.4

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcC--CCCcccccccccC
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH--SSCPLCRATIISF  191 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~i~~~  191 (352)
                      ...+|+||++.+..++.+.   .|+|.||..||.+||+.+  .+||+||++|...
T Consensus        14 ~i~~C~IC~~~i~~g~~C~---~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~   65 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCE---TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE   65 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECS---SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred             CCCcCcchhhHcccCCccC---CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence            3568999999998776554   499999999999999876  7899999988643

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=7e-11  Score=91.00  Aligned_cols=47  Identities=21%  Similarity=0.481  Sum_probs=41.0

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII  189 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  189 (352)
                      ....|+||++.|..   ..+++ |+|.||..||..|+.....||+||+.+.
T Consensus        14 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           14 IPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            45689999999966   34577 9999999999999998889999999884

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=9.1e-11  Score=88.18  Aligned_cols=50  Identities=30%  Similarity=0.661  Sum_probs=41.2

Q ss_pred             cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHh---cCCCCcccccccccC
Q 036833          138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK---SHSSCPLCRATIISF  191 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~CR~~i~~~  191 (352)
                      .+...|+||++.|..   ...++ |||.||..||..|+.   .+..||+||+.+...
T Consensus        18 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             ccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            346789999999875   45567 999999999999996   456899999988653

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.06  E-value=5.3e-11  Score=101.08  Aligned_cols=47  Identities=38%  Similarity=0.866  Sum_probs=41.1

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      ...|+||++.|..   ..++| |||.||..||..|+..+.+||+||+++..
T Consensus        53 ~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   99 (138)
T 4ayc_A           53 ELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKS   99 (138)
T ss_dssp             HSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCC
T ss_pred             cCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            3479999999976   45678 99999999999999999999999998743

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=1.1e-10  Score=86.49  Aligned_cols=49  Identities=22%  Similarity=0.560  Sum_probs=40.5

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHH-hcCCCCcccccccccC
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWL-KSHSSCPLCRATIISF  191 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl-~~~~~CP~CR~~i~~~  191 (352)
                      +...|+||++.+...   ..++ |||.||..||..|+ ..+..||+||+.+...
T Consensus        14 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           14 DKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             CCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             cCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            456799999998763   3366 99999999999999 4567899999988653

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.05  E-value=1.3e-10  Score=88.11  Aligned_cols=50  Identities=24%  Similarity=0.579  Sum_probs=40.5

Q ss_pred             cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcC--CCCccccccccc
Q 036833          138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH--SSCPLCRATIIS  190 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~CR~~i~~  190 (352)
                      .+...|+||++.|..   ...++.|||.||..||..|+..+  ..||+||+.+..
T Consensus        13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2yur_A           13 PDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS   64 (74)
T ss_dssp             CGGGSCSSSCCCCTT---CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred             CCCCCCcCCChHHhC---CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence            345689999999976   33465599999999999999765  689999997544

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.98  E-value=4.2e-10  Score=86.44  Aligned_cols=49  Identities=33%  Similarity=0.689  Sum_probs=41.3

Q ss_pred             cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc------CCCCccccccccc
Q 036833          138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS------HSSCPLCRATIIS  190 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~i~~  190 (352)
                      .+...|+||++.|...   .+++ |+|.||..||..|+..      ...||+||..+..
T Consensus        17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           17 KEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             ccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            3456899999998763   3677 9999999999999976      6689999998764

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.97  E-value=2.3e-10  Score=91.96  Aligned_cols=49  Identities=27%  Similarity=0.718  Sum_probs=40.7

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcC-CCCccccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH-SSCPLCRATIIS  190 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~i~~  190 (352)
                      +...|+||++.|..  .+.+++ |||.||..||..|+..+ ..||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~--p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           21 EVFRCFICMEKLRD--ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HHTBCTTTCSBCSS--EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCccCCccccC--ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            34679999999975  233377 99999999999999877 689999999854

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=4.1e-10  Score=86.50  Aligned_cols=50  Identities=32%  Similarity=0.674  Sum_probs=41.9

Q ss_pred             cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc------CCCCcccccccccC
Q 036833          138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS------HSSCPLCRATIISF  191 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~------~~~CP~CR~~i~~~  191 (352)
                      .+...|+||++.|..   ...++ |+|.||..|+..|+..      ...||+||..+...
T Consensus        17 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecv_A           17 KEEVTCPICLELLTQ---PLSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE   72 (85)
T ss_dssp             CCCCCCTTTCSCCSS---CBCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred             cCCCCCCCCCcccCC---ceeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence            345689999999976   34567 9999999999999976      77899999988653

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.97  E-value=2.2e-10  Score=95.15  Aligned_cols=52  Identities=27%  Similarity=0.652  Sum_probs=43.8

Q ss_pred             CCCCCcccccccccC----cceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833          139 EGSDCSVCLSEFQEH----ESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF  191 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  191 (352)
                      +...|+||++.|...    ..++.++ |||.||..||..|++.+.+||+||+.+...
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   61 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK   61 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred             CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence            356899999999764    3446777 999999999999999989999999988543

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=98.97  E-value=4.7e-10  Score=85.53  Aligned_cols=49  Identities=20%  Similarity=0.559  Sum_probs=41.4

Q ss_pred             cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCccccccccc
Q 036833          138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIIS  190 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  190 (352)
                      .+...|+||++.|..   ..+++ |||.||..||..|+.. +.+||+||..+..
T Consensus         6 ~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            6 PEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             cccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence            345689999999976   34567 9999999999999976 7889999998754

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.94  E-value=6.6e-10  Score=81.29  Aligned_cols=44  Identities=36%  Similarity=0.762  Sum_probs=36.3

Q ss_pred             CcCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHh---cCCCCccc
Q 036833          137 LVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK---SHSSCPLC  184 (352)
Q Consensus       137 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~---~~~~CP~C  184 (352)
                      ..+...|+||++.|..   ..+++ |||.||..||..|+.   .+..||+|
T Consensus        17 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            3456789999999976   44567 999999999999997   45689998

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.93  E-value=4.6e-10  Score=89.64  Aligned_cols=48  Identities=25%  Similarity=0.677  Sum_probs=40.5

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      ...|+||++.|...  +.+++ |||.||..||..|+..+..||+||..+..
T Consensus        22 ~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           22 LLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            45799999999762  33346 99999999999999988899999998754

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.93  E-value=1.7e-10  Score=87.83  Aligned_cols=49  Identities=33%  Similarity=0.631  Sum_probs=41.1

Q ss_pred             cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-------CCCCccccccccc
Q 036833          138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-------HSSCPLCRATIIS  190 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-------~~~CP~CR~~i~~  190 (352)
                      .+...|+||++.|..   ...++ |||.||..||..|+..       ...||+||..+..
T Consensus        10 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           10 QEEVTCPICLELLTE---PLSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCEETTTTEECSS---CCCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             ccCCCCcCCCcccCC---eeECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            345689999999976   34577 9999999999999976       5689999998864

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.91  E-value=6.6e-10  Score=81.89  Aligned_cols=52  Identities=17%  Similarity=0.508  Sum_probs=40.7

Q ss_pred             CCCCccccc-ccccCcce-eccCCCCCcccHhHHHHHHhc-CCCCcccccccccCC
Q 036833          140 GSDCSVCLS-EFQEHESL-RLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIISFP  192 (352)
Q Consensus       140 ~~~C~ICl~-~~~~~~~~-~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~~  192 (352)
                      ...|+||++ .|...... .+++ |||.||..||..|+.. ...||+||+.+....
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   57 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence            467999999 77665433 3466 9999999999999754 467999999886543

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=8.4e-10  Score=79.02  Aligned_cols=43  Identities=35%  Similarity=0.916  Sum_probs=35.5

Q ss_pred             cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHH---hcCCCCccc
Q 036833          138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWL---KSHSSCPLC  184 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl---~~~~~CP~C  184 (352)
                      .+...|+||++.+...   .+++ |+|.||..||..|+   ..+..||+|
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            3456899999999763   4577 99999999999995   356789998

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.89  E-value=6.8e-10  Score=90.10  Aligned_cols=49  Identities=24%  Similarity=0.662  Sum_probs=41.4

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      +...|+||++.|..  .+.+++ |||.||..||..|+..+..||+||..+..
T Consensus        14 ~~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           14 PHLMCVLCGGYFID--ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHK   62 (108)
T ss_dssp             GGTBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred             CcCCCccCChHHhC--cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence            35689999999975  244447 99999999999999988999999998764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.89  E-value=5.8e-10  Score=92.53  Aligned_cols=52  Identities=27%  Similarity=0.652  Sum_probs=43.2

Q ss_pred             CCCCCcccccccccC----cceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833          139 EGSDCSVCLSEFQEH----ESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF  191 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  191 (352)
                      +...|+||++.|...    .....++ |||.||..||+.|+..+.+||+||+.+...
T Consensus        71 ~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  126 (133)
T 4ap4_A           71 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK  126 (133)
T ss_dssp             SSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence            356799999998763    2335666 999999999999999999999999988653

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.88  E-value=8.8e-10  Score=91.61  Aligned_cols=47  Identities=23%  Similarity=0.487  Sum_probs=39.7

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcC-CCCccccccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH-SSCPLCRATIIS  190 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~i~~  190 (352)
                      ...|+||++.|..   ...++ |||.||..||..|+..+ ..||+||..+..
T Consensus        52 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           52 TFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            4579999999986   45567 99999999999999754 489999998854

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.85  E-value=1.2e-09  Score=95.16  Aligned_cols=48  Identities=33%  Similarity=0.751  Sum_probs=40.2

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCccccccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIIS  190 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  190 (352)
                      ...|+||++.|..  .+.+++ |||.||..||..|+.. +..||+||..+..
T Consensus        54 ~~~C~IC~~~~~~--p~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           54 ELMCPICLDMLKN--TMTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHBCTTTSSBCSS--EEEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCcccChHhhC--cCEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            4579999999986  344457 9999999999999986 7789999998853

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.84  E-value=1.7e-09  Score=84.96  Aligned_cols=50  Identities=22%  Similarity=0.587  Sum_probs=40.0

Q ss_pred             CcCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc--CCCCcccccccc
Q 036833          137 LVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS--HSSCPLCRATII  189 (352)
Q Consensus       137 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~i~  189 (352)
                      ..+...|+||++.|..   ...++.|||.||..||..|+..  +..||+||..+.
T Consensus        10 ~~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           10 IPDELLCLICKDIMTD---AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCTTTEETTTTEECSS---CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             CCcCCCCCCCChhhcC---ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            3455689999999976   3455559999999999999964  358999999863

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.83  E-value=1.8e-09  Score=87.58  Aligned_cols=48  Identities=29%  Similarity=0.647  Sum_probs=39.6

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCC---CCcccccccccC
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS---SCPLCRATIISF  191 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~---~CP~CR~~i~~~  191 (352)
                      ...|+||++.|..   ...++ |||.||..||..|+..+.   .||+||..+...
T Consensus        21 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (112)
T 1jm7_A           21 ILECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (112)
T ss_dssp             HTSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             CCCCcccChhhcC---eEECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence            4579999999876   34467 999999999999997653   899999987653

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.77  E-value=8.7e-09  Score=79.43  Aligned_cols=55  Identities=18%  Similarity=0.402  Sum_probs=41.5

Q ss_pred             cCCCCCcccccccccCcce-eccCCCCCcccHhHHHHHHh-cCCCCcccccccccCCC
Q 036833          138 VEGSDCSVCLSEFQEHESL-RLLPKCNHAFHLPCIDTWLK-SHSSCPLCRATIISFPA  193 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~-~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~~~  193 (352)
                      .+..+|+||++.+...+.. .-++ |||.||..|+..|+. .+..||+||+.+.....
T Consensus         9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            4556899999998654322 2234 999999999999974 35689999999876543

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.77  E-value=2.9e-09  Score=87.85  Aligned_cols=50  Identities=26%  Similarity=0.658  Sum_probs=41.1

Q ss_pred             CcCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCC-CCccccccccc
Q 036833          137 LVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS-SCPLCRATIIS  190 (352)
Q Consensus       137 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~i~~  190 (352)
                      ..+...|+||++.+...   ..++ |||.||..||..|+.... .||+||..+..
T Consensus        15 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            33456899999999763   4567 999999999999997654 89999998754

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.76  E-value=3.8e-09  Score=91.22  Aligned_cols=48  Identities=23%  Similarity=0.447  Sum_probs=40.3

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCC-CCcccccccccC
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS-SCPLCRATIISF  191 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~i~~~  191 (352)
                      ...|+||++.|..   ..+++ |||.||..||..|+.... .||+||..+...
T Consensus        78 ~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           78 SFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             CCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            4579999999976   34577 999999999999997654 899999998654

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.76  E-value=2.8e-09  Score=78.88  Aligned_cols=47  Identities=21%  Similarity=0.503  Sum_probs=39.8

Q ss_pred             CCCCCcccccccccCcceecc--CCCCCc-ccHhHHHHHHhcCCCCcccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLL--PKCNHA-FHLPCIDTWLKSHSSCPLCRATII  189 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~l--p~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~  189 (352)
                      +...|.||++.+.+   ..++  | |||. |+..|+..|...+..||+||+++.
T Consensus         7 ~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            45689999999765   3444  8 9999 899999999988889999999874

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.73  E-value=1.6e-09  Score=88.78  Aligned_cols=47  Identities=32%  Similarity=0.833  Sum_probs=39.7

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCccccccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIIS  190 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  190 (352)
                      ...|+||++.|..   ...++ |||.||..||..|+.. +..||+||..+..
T Consensus        15 ~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           15 ECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            4579999999875   45567 9999999999999965 6689999998854

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.72  E-value=5.8e-09  Score=85.54  Aligned_cols=48  Identities=29%  Similarity=0.548  Sum_probs=40.4

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCcccccccccC
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIISF  191 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~  191 (352)
                      ...|+||++.|..   ...++ |||.||..||..|+.. +..||+||..+...
T Consensus        23 ~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (116)
T 1rmd_A           23 SISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPT   71 (116)
T ss_dssp             HTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHh
Confidence            4579999999976   34467 9999999999999976 67899999988653

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.67  E-value=7.5e-09  Score=76.33  Aligned_cols=49  Identities=22%  Similarity=0.432  Sum_probs=39.5

Q ss_pred             CCCCCcccccccccCcceeccCCCCCc-ccHhHHHHHHhcCCCCcccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHA-FHLPCIDTWLKSHSSCPLCRATII  189 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~  189 (352)
                      ....|.||++.+.+.. +..+| |||. |+..|+..|...+..||+||+++.
T Consensus         6 ~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            3568999999876521 22348 9998 999999999988889999999874

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.66  E-value=1e-08  Score=101.01  Aligned_cols=48  Identities=25%  Similarity=0.776  Sum_probs=41.3

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHh-cCCCCcccccccccC
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK-SHSSCPLCRATIISF  191 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~  191 (352)
                      ...|+||++.+..   ...+| |||.||..|+..|+. .+..||+||+.+...
T Consensus       332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            3589999999865   66788 999999999999998 678899999988653

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.63  E-value=2.1e-08  Score=78.27  Aligned_cols=48  Identities=13%  Similarity=0.105  Sum_probs=41.9

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      +...|+||++.|.+   ..+++ |||.|+..||..|+..+.+||+||..+..
T Consensus        13 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A           13 DEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             TTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             hheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence            45689999999987   55677 99999999999999988999999988753

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.63  E-value=9.4e-09  Score=73.86  Aligned_cols=46  Identities=28%  Similarity=0.584  Sum_probs=38.2

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF  191 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  191 (352)
                      +...|+||++.|..   .++++ |+|.||..||..|   ...||+||+.+...
T Consensus         5 ~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            5 QFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG   50 (56)
T ss_dssp             CCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred             cCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence            45679999999986   46788 9999999999885   46799999987653

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.58  E-value=3.3e-08  Score=79.69  Aligned_cols=48  Identities=15%  Similarity=0.120  Sum_probs=42.0

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      +...|+||++.|.+   ..+++ |||.|+..||..|+..+.+||+||.++..
T Consensus        28 ~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~   75 (100)
T 2kre_A           28 DEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE   75 (100)
T ss_dssp             TTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred             HhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence            45689999999987   55677 99999999999999888899999998754

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.56  E-value=1.7e-08  Score=86.26  Aligned_cols=47  Identities=23%  Similarity=0.465  Sum_probs=39.5

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCC-CCcccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS-SCPLCRATII  189 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~i~  189 (352)
                      +...|+||++.|...   ..++ |||.||..||..|+.... .||+||.++.
T Consensus        30 ~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~   77 (141)
T 3knv_A           30 AKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGI   77 (141)
T ss_dssp             GGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred             cCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence            456899999999874   4466 999999999999997654 8999999874

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.56  E-value=4.7e-08  Score=78.50  Aligned_cols=48  Identities=15%  Similarity=0.142  Sum_probs=41.7

Q ss_pred             CCCCCcccccccccCcceeccCCCC-CcccHhHHHHHHhcCCCCccccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCN-HAFHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~-H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      +...|+||++.|.+   ..+++ || |.|+..||..|+..+.+||+||.++..
T Consensus        21 ~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~   69 (98)
T 1wgm_A           21 DEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             TTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             HhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence            45689999999987   45677 99 999999999999888899999998754

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.56  E-value=1.6e-08  Score=76.84  Aligned_cols=43  Identities=23%  Similarity=0.683  Sum_probs=37.0

Q ss_pred             CCCCcccccccccCcceeccCCCCCc-ccHhHHHHHHhcCCCCccccccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHA-FHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      ...|+||++.+..   ..++| |||. ||..|+..|    ..||+||+.+..
T Consensus        24 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           24 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             HTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             CCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            4579999999866   66778 9999 999999999    789999998753

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.55  E-value=1.4e-08  Score=83.50  Aligned_cols=44  Identities=27%  Similarity=0.634  Sum_probs=37.8

Q ss_pred             CCCCcccccccccCcceecc-CCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLL-PKCNHAFHLPCIDTWLKSHSSCPLCRATII  189 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~l-p~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  189 (352)
                      ...|+||++.|..   ...+ + |||.||..||..|+.  ..||+||..+.
T Consensus        22 ~~~C~IC~~~~~~---pv~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~   66 (117)
T 1jm7_B           22 LLRCSRCTNILRE---PVCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW   66 (117)
T ss_dssp             TTSCSSSCSCCSS---CBCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred             CCCCCCCChHhhC---ccEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence            4689999999976   3455 7 999999999999987  78999999874

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.54  E-value=2.1e-08  Score=96.86  Aligned_cols=53  Identities=25%  Similarity=0.660  Sum_probs=40.3

Q ss_pred             cCCCCCcccccccccCccee----ccCCCCCcccHhHHHHHHhcC-----------CCCccccccccc
Q 036833          138 VEGSDCSVCLSEFQEHESLR----LLPKCNHAFHLPCIDTWLKSH-----------SSCPLCRATIIS  190 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~~----~lp~C~H~FH~~Ci~~Wl~~~-----------~~CP~CR~~i~~  190 (352)
                      ....+|+||++.+..+..+-    ..++|+|.||..|+.+||++.           ..||.||++|..
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            35678999999998733221    123599999999999999652           359999998864

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.41  E-value=1.6e-07  Score=68.72  Aligned_cols=48  Identities=23%  Similarity=0.642  Sum_probs=36.6

Q ss_pred             CCCCCcccccccccCcceeccC-CCCC---cccHhHHHHHHhc--CCCCcccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLP-KCNH---AFHLPCIDTWLKS--HSSCPLCRATII  189 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp-~C~H---~FH~~Ci~~Wl~~--~~~CP~CR~~i~  189 (352)
                      +...|.||+++.  ++.+ ++| .|.|   .||..|+..|+..  +.+||+|+..+.
T Consensus         5 ~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            456899999984  3334 578 3445   8999999999954  678999998764

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.39  E-value=1.3e-07  Score=82.53  Aligned_cols=50  Identities=26%  Similarity=0.650  Sum_probs=40.9

Q ss_pred             CcCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCccccccccc
Q 036833          137 LVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIIS  190 (352)
Q Consensus       137 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  190 (352)
                      ..+...|+||++.|...   ..++ |||.||..||..|+.. ...||+||..+..
T Consensus        15 ~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence            34556899999999863   4567 9999999999999965 4489999998754

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.39  E-value=1.3e-07  Score=71.80  Aligned_cols=43  Identities=23%  Similarity=0.688  Sum_probs=35.6

Q ss_pred             CCCCcccccccccCcceeccCCCCCc-ccHhHHHHHHhcCCCCccccccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHA-FHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      ...|+||++.+..   ..++| |||. ||..|+..    ...||+||..+..
T Consensus        25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred             CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence            3579999999865   66788 9999 99999964    3689999998854

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=1.4e-07  Score=74.76  Aligned_cols=47  Identities=23%  Similarity=0.492  Sum_probs=37.7

Q ss_pred             cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcC------CCCcc--cccc
Q 036833          138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH------SSCPL--CRAT  187 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~------~~CP~--CR~~  187 (352)
                      .....|+||++.|.+   ..+++.|||.|+..||..|+..+      .+||+  |+..
T Consensus         5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            345689999999986   34453499999999999999753      48999  9865

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.38  E-value=2e-07  Score=69.77  Aligned_cols=44  Identities=32%  Similarity=0.789  Sum_probs=37.1

Q ss_pred             CCCCCcccccccccCcceeccCCCCCc-ccHhHHHHHHhcCCCCccccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHA-FHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      +...|.||++.+..   +.++| |+|. |+..|+..    ...||+||+.|..
T Consensus        14 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           14 NSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred             CCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence            45689999998765   77888 9999 99999984    4689999998854

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.33  E-value=2.1e-07  Score=86.31  Aligned_cols=48  Identities=13%  Similarity=0.182  Sum_probs=40.3

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCccccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIIS  190 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  190 (352)
                      ....|+||++.|.+   ..+++ |||.|+..||..|+.. +.+||+||.++..
T Consensus       207 ~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          207 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             STTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             cccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            45679999999987   45677 9999999999999976 4559999998743

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.31  E-value=2.5e-07  Score=73.08  Aligned_cols=48  Identities=25%  Similarity=0.662  Sum_probs=39.5

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc--------CCCCcc--cccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS--------HSSCPL--CRAT  187 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~--------~~~CP~--CR~~  187 (352)
                      +..+|+||++.+...+.+.+++ |+|.||..|+..++..        ...||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            3568999999998777666666 9999999999999853        236999  9987

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.24  E-value=2.3e-07  Score=71.44  Aligned_cols=43  Identities=30%  Similarity=0.679  Sum_probs=36.8

Q ss_pred             CCCCcccccccccCcceeccCCCCCc-ccHhHHHHHHhcCCCCccccccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHA-FHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      ...|.||++.+..   +.++| |||. |+..|+..|    ..||+||+.+..
T Consensus        18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~   61 (79)
T 2yho_A           18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEH   61 (79)
T ss_dssp             HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred             CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence            3579999998765   67788 9999 999999987    489999998864

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.17  E-value=1.1e-06  Score=78.05  Aligned_cols=49  Identities=12%  Similarity=0.156  Sum_probs=40.6

Q ss_pred             cCCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCccccccccc
Q 036833          138 VEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIIS  190 (352)
Q Consensus       138 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  190 (352)
                      .+...|+||++.|.+   ..+++ |||.|+..||..|+.. +.+||+||.++..
T Consensus       104 p~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          104 PDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             CGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            345689999999987   45667 9999999999999976 3579999988743

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.03  E-value=8.7e-07  Score=86.29  Aligned_cols=43  Identities=28%  Similarity=0.786  Sum_probs=37.1

Q ss_pred             CCCCcccccccccCcceeccCCCCCc-ccHhHHHHHHhcCCCCccccccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHA-FHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      ...|+||++.+..   ...+| |||. ||..|+..|    ..||+||..+..
T Consensus       295 ~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~  338 (345)
T 3t6p_A          295 ERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKG  338 (345)
T ss_dssp             TCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred             CCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccC
Confidence            4679999999876   66778 9999 999999998    689999998753

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=97.97  E-value=2.8e-06  Score=62.25  Aligned_cols=48  Identities=15%  Similarity=0.229  Sum_probs=40.1

Q ss_pred             CCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833          141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF  191 (352)
Q Consensus       141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  191 (352)
                      ..|+||++.|.+   ..+++.|||+|...||..|+..+.+||+++.++...
T Consensus         4 ~~CpIs~~~m~d---PV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~   51 (61)
T 2bay_A            4 MLCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   51 (61)
T ss_dssp             CCCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             EEecCCCCCCCC---CEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence            469999999986   345523999999999999998888899999988654

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=97.90  E-value=4.5e-06  Score=78.04  Aligned_cols=48  Identities=23%  Similarity=0.542  Sum_probs=38.7

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcC--CCCcc--ccccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH--SSCPL--CRATIIS  190 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--~~CP~--CR~~i~~  190 (352)
                      ...|+||++.|...  |+.+. |||.|+..||..|+..+  ..||+  ||..+..
T Consensus       181 el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          181 ELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM  232 (267)
T ss_dssp             CSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred             eeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence            45699999999764  44455 99999999999999754  46999  9997743

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.76  E-value=1.7e-05  Score=73.34  Aligned_cols=49  Identities=27%  Similarity=0.616  Sum_probs=40.2

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCC--CCcccccccccC
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS--SCPLCRATIISF  191 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~--~CP~CR~~i~~~  191 (352)
                      ...|.||.+-...+..+  - .|+|.||..|+..|++.+.  .||.|+..|...
T Consensus       180 i~~C~iC~~iv~~g~~C--~-~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSC--E-TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             CCBCTTTCSBCSSCEEC--S-SSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCcCcchhhHHhCCccc--C-ccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            56799999998876444  2 4999999999999997644  899999988654

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.71  E-value=1.8e-05  Score=63.26  Aligned_cols=47  Identities=26%  Similarity=0.557  Sum_probs=38.3

Q ss_pred             CCcccccccccCcceeccCCCCCcccHhHHHHHHh-cCCCCcccccccccC
Q 036833          142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK-SHSSCPLCRATIISF  191 (352)
Q Consensus       142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~i~~~  191 (352)
                      -|.+|--.+..  ..|+.| |+|+|+.+|+..|.+ ..++||.|+.++...
T Consensus         3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV   50 (101)
T 3vk6_A            3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRI   50 (101)
T ss_dssp             BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred             ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence            48888777654  478899 999999999999984 468899999988543

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=91.95  E-value=0.11  Score=38.28  Aligned_cols=46  Identities=26%  Similarity=0.530  Sum_probs=32.8

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcC----CCCccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH----SSCPLCRATI  188 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~i  188 (352)
                      ....|.||.+.   ++ +..-..|...||..|++..|..-    -.||.|.+..
T Consensus        11 ~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           11 PGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             TTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            45679999753   44 43434699999999999887543    3699997653

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=90.26  E-value=0.17  Score=39.52  Aligned_cols=34  Identities=12%  Similarity=0.335  Sum_probs=25.6

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHH
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTW  174 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W  174 (352)
                      ...|.||++.+........+. |+|.|+..|+..+
T Consensus         3 e~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence            457999998754433344476 9999999999984

>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}

Probab=83.76  E-value=1.4  Score=32.33  Aligned_cols=32  Identities=19%  Similarity=0.188  Sum_probs=16.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHH-HHHHhhccC
Q 036833           57 FSPLIIAVIGILASAFILVTYYTI-ISKYCKRRS   89 (352)
Q Consensus        57 f~~lii~iigil~~~~llv~~~~i-~~~~~~rr~   89 (352)
                      ++.++ +++|-++++++++.+.++ ..|+++||+
T Consensus         7 ~p~~L-ivlGg~~~lll~~glcI~ccvkcrhRrr   39 (70)
T 2klu_A            7 GSMAL-IVLGGVAGLLLFIGLGIFFSVRSRHRRR   39 (70)
T ss_dssp             CSSHH-HHHHHHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred             hHHHH-HHHhHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            33444 566666666666555555 344444433

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=82.19  E-value=0.31  Score=35.11  Aligned_cols=49  Identities=20%  Similarity=0.477  Sum_probs=33.6

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHh-----cCCCCcccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK-----SHSSCPLCRAT  187 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~-----~~~~CP~CR~~  187 (352)
                      +...|+||...+..+...+.-..|..=||..|+..-..     ....||.|+..
T Consensus         5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            45679999998865443333335888899999875432     34569999753

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=81.28  E-value=3.6  Score=27.76  Aligned_cols=12  Identities=50%  Similarity=0.899  Sum_probs=6.4

Q ss_pred             chhHHHHHHHHH
Q 036833           57 FSPLIIAVIGIL   68 (352)
Q Consensus        57 f~~lii~iigil   68 (352)
                      ...++.+++|++
T Consensus        11 ~~~Ia~~vVGvl   22 (44)
T 2jwa_A           11 LTSIISAVVGIL   22 (44)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             ccchHHHHHHHH
Confidence            344555666644

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=80.77  E-value=1.8  Score=33.36  Aligned_cols=34  Identities=21%  Similarity=0.511  Sum_probs=22.7

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHH
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTW  174 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W  174 (352)
                      .+..|.||-. +..++....- .|+-+||..|+.+-
T Consensus        14 ~D~~C~VC~~-~t~~~l~pCR-vC~RvfH~~CL~r~   47 (89)
T 1wil_A           14 NDEMCDVCEV-WTAESLFPCR-VCTRVFHDGCLRRM   47 (89)
T ss_dssp             CSCCCTTTCC-CCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred             CCcccCcccc-ccccceeccc-cccccccHhhcccc
Confidence            4668999953 2233322222 49999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	352
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	7e-21
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-12
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	1e-11
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	9e-11
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	3e-10
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	7e-10
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	4e-09
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	1e-08
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	2e-08
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	7e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	2e-06
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	6e-05
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	2e-04
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	0.003

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 82.6 bits (204), Expect = 7e-21
 Identities = 27/51 (52%), Positives = 38/51 (74%)

Query: 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII 189
           +G +C+VCL+E ++ E  R LP+C H FH  C+D WL SHS+CPLCR T++
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 59.6 bits (144), Expect = 2e-12
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS 190
               C +CL +   +     LP C HAF   CI  W++ + +CPLC+  + S
Sbjct: 4   VAERCPICLEDPSNYS--MALP-CLHAFCYVCITRWIRQNPTCPLCKVPVES 52

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (139), Expect = 1e-11
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 14/63 (22%)

Query: 138 VEGSDCSVCLSEF--------------QEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPL 183
           +   +C++C +                   E       CNHAFH  CI  WLK+   CPL
Sbjct: 19  IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 78

Query: 184 CRA 186
              
Sbjct: 79  DNR 81

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 9e-11
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 139 EGSDCSVCLSEFQEHESLRLLP-KCNHAFHLPCIDTWLK-SHSSCPLCRATI 188
           +   C  C +    + SL+L+   C H     C+D        +CP C   +
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 3e-10
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSS-CPLCRATI 188
           C +C    ++   +++ P C H     C+ +W +S    CP CR  I
Sbjct: 26  CKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEI 68

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.0 bits (124), Expect = 7e-10
 Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 1/48 (2%)

Query: 142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLK-SHSSCPLCRATI 188
           +C +C+   +  +       C +     C        +  CP CR   
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 49

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 4e-09
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 7/54 (12%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFPAAQA 196
           C  C +E +     +LLP C H     C++        CP+C+A         A
Sbjct: 9   CQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGADTPA 55

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.4 bits (119), Expect = 1e-08
 Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 5/82 (6%)

Query: 129 CKYKKGDGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-----HSSCPL 183
           C        V      +  S+      +  L KC+HAFHL C+     +        CP 
Sbjct: 28  CIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS 87

Query: 184 CRATIISFPAAQASAPGEVSES 205
           C+         Q     EV  S
Sbjct: 88  CKTIYGEKTGTQPWGKMEVFRS 109

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 48.3 bits (114), Expect = 2e-08
 Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 3/49 (6%)

Query: 143 CSVCLSEFQEHESLRLLPK-CNHAFHLPCIDTWLKSH--SSCPLCRATI 188
           C +C  E                  H  C+ TWL     ++C +C    
Sbjct: 9   CWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 7e-07
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 135 DGLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS---SCPLCRATI 188
           + + +  +C +CL   +E  S     KC+H F   C+   L        CPLC+  I
Sbjct: 16  NAMQKILECPICLELIKEPVST----KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 5/47 (10%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSS-CPLCRATI 188
           C +C     +         C H F   CI   LK   S CP CR   
Sbjct: 26  CQICEHILADPVETS----CKHLFCRICILRCLKVMGSYCPSCRYPC 68

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 6e-05
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 9/53 (16%)

Query: 141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHS--------SCPLCR 185
           S C +CL E+   +   +   C   F   C+  +++           SCP   
Sbjct: 6   SGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 5/46 (10%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188
           CS C +  +E      L  C H F   C+   + +   CP+C    
Sbjct: 25  CSRCTNILREP---VCLGGCEHIFCSNCVSDCIGTG--CPVCYTPA 65

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.6 bits (76), Expect = 0.003
 Identities = 6/46 (13%), Positives = 16/46 (34%), Gaps = 3/46 (6%)

Query: 143 CSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATI 188
           C++     +        PK    F    ++ ++K   + P+    +
Sbjct: 3   CAISGKVPRRPVLS---PKSRTIFEKSLLEQYVKDTGNDPITNEPL 45

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	352
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.61
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.36
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.33
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.32
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.31
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.23
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.2
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.09
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.0
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.0
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.91
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.84
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.7
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.6
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.56
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.39
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.28
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	88.92
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	85.99
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	82.97

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.61  E-value=1.1e-16  Score=114.36  Aligned_cols=51  Identities=53%  Similarity=1.305  Sum_probs=46.3

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII  189 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  189 (352)
                      +..+|+|||++|..++.++.++.|+|.||..||..|++.+.+||+||++|.
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            456799999999999988877679999999999999999999999999874

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.36  E-value=1.1e-13  Score=102.48  Aligned_cols=48  Identities=33%  Similarity=0.908  Sum_probs=41.8

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATII  189 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~  189 (352)
                      ..++|+||++.|..  .+++++ |+|.||..||..|++.+.+||+||+++.
T Consensus         4 ~~d~C~IC~~~~~~--~~~~~~-C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           4 VAERCPICLEDPSN--YSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCCS--CEEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCccCCcCccC--CcEEeC-CCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            35679999999965  356787 9999999999999999999999999874

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=5.3e-13  Score=107.96  Aligned_cols=53  Identities=28%  Similarity=0.605  Sum_probs=41.2

Q ss_pred             CCCCcccccccccC---------------cceeccCCCCCcccHhHHHHHHhc-----CCCCcccccccccCCC
Q 036833          140 GSDCSVCLSEFQEH---------------ESLRLLPKCNHAFHLPCIDTWLKS-----HSSCPLCRATIISFPA  193 (352)
Q Consensus       140 ~~~C~ICl~~~~~~---------------~~~~~lp~C~H~FH~~Ci~~Wl~~-----~~~CP~CR~~i~~~~~  193 (352)
                      ...|+||++.|...               ..+.+++ |+|+||..||..||..     +.+||+||+.+.....
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~-CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~~   97 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG   97 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred             cccccchhheecccccccccccccccccccceEECC-CCChhhHHHHHHHHHhcCcCCCCccccccchhccCcC
Confidence            45799999998542               2345676 9999999999999964     3479999998866543

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.3e-13  Score=95.55  Aligned_cols=48  Identities=17%  Similarity=0.436  Sum_probs=40.3

Q ss_pred             CCcccccccccCcce-eccCCCCCcccHhHHHHHHhc-CCCCccccccccc
Q 036833          142 DCSVCLSEFQEHESL-RLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIIS  190 (352)
Q Consensus       142 ~C~ICl~~~~~~~~~-~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  190 (352)
                      +|+||+++|..++.. +.++ |||.||..|+..|+.. +..||+||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~-CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSS-SSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecC-CCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            699999999877654 4456 9999999999999975 4579999998854

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4e-13  Score=104.31  Aligned_cols=50  Identities=32%  Similarity=0.717  Sum_probs=41.5

Q ss_pred             CCCCcccccccccCc---------------ceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833          140 GSDCSVCLSEFQEHE---------------SLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~---------------~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      .+.|+||++.+....               .+.+++ |+|+||..||..||+.+.+||+||+++..
T Consensus        21 ~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   85 (88)
T d3dplr1          21 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF   85 (88)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CCcCEEccchhhCccccccccccccccccCCeEEcc-ccCcccHHHHHHHHHHCCcCCCCCCcccc
Confidence            456999999886532               245666 99999999999999999999999998753

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.5e-12  Score=94.18  Aligned_cols=53  Identities=19%  Similarity=0.493  Sum_probs=41.1

Q ss_pred             CCCCCcccccccccCc--ceeccCCCCCcccHhHHHHHHhc-CCCCcccccccccCC
Q 036833          139 EGSDCSVCLSEFQEHE--SLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIISFP  192 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~--~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~~  192 (352)
                      ++..|+||++++..+.  .+.+++ |||.||..||..|+.. +..||+||+.+...+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~   57 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCc-cChHhhHHHHHHHhCcCcCCCCCCCcCccccc
Confidence            4568999999864432  345566 9999999999999965 557999999886543

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.2e-12  Score=95.60  Aligned_cols=47  Identities=28%  Similarity=0.844  Sum_probs=40.5

Q ss_pred             CCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCcccccccccC
Q 036833          141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIISF  191 (352)
Q Consensus       141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~  191 (352)
                      ..|+||++.+..   .+++| |||.||..||..||.. +..||+||..|...
T Consensus        24 ~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~   71 (79)
T d1fbva4          24 QLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGT   71 (79)
T ss_dssp             TBCTTTSSSBCC---EECSS-SCCEECHHHHHHHHHTTCCSCTTTCCCCCCC
T ss_pred             CCCccCCCcCCC---eEEeC-CCCeeeHHHHHHHHHHCcCcCCCCCcCccCC
Confidence            469999999865   77888 9999999999999974 56899999998653

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.09  E-value=1.2e-11  Score=87.88  Aligned_cols=47  Identities=15%  Similarity=0.243  Sum_probs=40.4

Q ss_pred             CCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccC
Q 036833          142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISF  191 (352)
Q Consensus       142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~  191 (352)
                      .|+||++.|.+   ..+++.|||+||..||..||+.+.+||+||+++...
T Consensus         2 ~C~Ic~~~~~~---Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~   48 (56)
T d2baya1           2 LCAISGKVPRR---PVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE   48 (56)
T ss_dssp             CCTTTCSCCSS---EEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred             CCccCCchHHh---cCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHH
Confidence            59999999976   344556999999999999999999999999988654

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=1e-10  Score=90.20  Aligned_cols=48  Identities=29%  Similarity=0.540  Sum_probs=40.3

Q ss_pred             CCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCcccccccccCC
Q 036833          141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIISFP  192 (352)
Q Consensus       141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~~~  192 (352)
                      ..|+||++.|..   ..+++ |||.|+..||..|++. +..||+||.++....
T Consensus        24 l~C~IC~~~~~~---pv~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~   72 (86)
T d1rmda2          24 ISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (86)
T ss_dssp             TBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             cCCccCCcchhc---ceecC-CCChhhHHHHHHHHhhCCCcCcccCCCCChhh
Confidence            469999999876   56777 9999999999999965 568999999876543

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=3.7e-11  Score=85.42  Aligned_cols=46  Identities=28%  Similarity=0.574  Sum_probs=38.3

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCcccccccccCC
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIISFP  192 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~~~  192 (352)
                      ..+|+||++.|..   .+++| |||.||..||..|   +..||+||+++....
T Consensus         6 ~l~C~IC~~~~~~---p~~lp-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T d1bora_           6 FLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             CCCCcccCcccCC---CEEec-CCCHHhHHHHHcC---CCcCcCCCCcccCCC
Confidence            3589999999976   56788 9999999999876   567999999986543

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.2e-10  Score=89.84  Aligned_cols=46  Identities=33%  Similarity=0.746  Sum_probs=38.5

Q ss_pred             CCCcccccccccCcceeccCCCCCcccHhHHHHHHhcC---CCCccccccccc
Q 036833          141 SDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH---SSCPLCRATIIS  190 (352)
Q Consensus       141 ~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~---~~CP~CR~~i~~  190 (352)
                      ..|+||++.|..   ...++ |||.||..||..|+..+   ..||+||..+..
T Consensus        22 l~CpIC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (103)
T d1jm7a_          22 LECPICLELIKE---PVSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (103)
T ss_dssp             TSCSSSCCCCSS---CCBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             cCCCccCchhCC---eEEcC-CCCchhhHHHHHHHHHCCCCCcCcCCCCcCCh
Confidence            469999999976   44577 99999999999999664   379999998754

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.84  E-value=7.1e-10  Score=79.40  Aligned_cols=48  Identities=21%  Similarity=0.563  Sum_probs=36.8

Q ss_pred             CCCCCcccccccccCcceeccC----CCCCcccHhHHHHHHh--cCCCCcccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLP----KCNHAFHLPCIDTWLK--SHSSCPLCRATII  189 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp----~C~H~FH~~Ci~~Wl~--~~~~CP~CR~~i~  189 (352)
                      +...|.||++++....   +.|    .|+|.||..||..|+.  .+.+||+||+++.
T Consensus         5 d~~~C~IC~~~~~~~~---~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELGNER---FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCC---CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccCCCce---eEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            4567999999886532   223    2569999999999994  4568999999864

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.4e-09  Score=85.08  Aligned_cols=46  Identities=26%  Similarity=0.593  Sum_probs=37.4

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      ...|+||++.|...  +.+.+ |||.||..||..|+.  ..||+||..+..
T Consensus        22 ~l~C~IC~~~~~~p--v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~   67 (97)
T d1jm7b_          22 LLRCSRCTNILREP--VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWI   67 (97)
T ss_dssp             TTSCSSSCSCCSSC--BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSC
T ss_pred             cCCCccCCchhhcC--ceeCC-CCCchhHHHHHHHHh--ccccccCCcCch
Confidence            45799999999763  44455 999999999999985  469999988754

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.60  E-value=1.5e-08  Score=76.37  Aligned_cols=48  Identities=13%  Similarity=0.182  Sum_probs=40.1

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCccccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIIS  190 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  190 (352)
                      +...|+||++-|.+   ..+++ |||.|+..||..|+.. +.+||+||.++..
T Consensus         6 ~~l~CpIc~~l~~d---Pv~~~-cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           6 DYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             STTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             ccccCcCcCchhhh---hcccC-CcCeecHHHHHHHHhcCCccCCCccccccc
Confidence            45679999999987   34677 9999999999999965 5679999998743

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.56  E-value=2.1e-08  Score=75.12  Aligned_cols=48  Identities=21%  Similarity=0.583  Sum_probs=40.4

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhc-CCCCccccccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS-HSSCPLCRATIIS  190 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~i~~  190 (352)
                      +...|+||++.|.+   ..+++ |||.|+..||..|+.. +..||.|+.++..
T Consensus         7 ~~l~CpIc~~~m~d---PV~~~-cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           7 EYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             ccCCCcCcCchhhC---ceEcc-CCCcchHHHHHHHHHHCCCCCCcccccCCc
Confidence            45689999999987   34677 9999999999999976 4579999998754

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.2e-07  Score=74.19  Aligned_cols=48  Identities=15%  Similarity=0.119  Sum_probs=40.7

Q ss_pred             CCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcCCCCccccccccc
Q 036833          140 GSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSHSSCPLCRATIIS  190 (352)
Q Consensus       140 ~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~~~CP~CR~~i~~  190 (352)
                      ...|+||++-|.+   ..+++.|+|.|+..||..||..+.+||+||.++..
T Consensus        22 ~f~CPI~~~lm~d---PV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          22 EFLDPIMSTLMCD---PVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             TTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             HhCCcCchhHHHH---HHhcccccchhhHHHHHHHHHhcCCcccccccccc
Confidence            5689999999987   55677345689999999999999999999998754

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.6e-07  Score=72.33  Aligned_cols=46  Identities=24%  Similarity=0.608  Sum_probs=37.1

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHHhcC--------CCCcccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKSH--------SSCPLCR  185 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~~--------~~CP~CR  185 (352)
                      ...+|+||++++...+.+.+++ |+|.||..|+..|+..+        ..||.|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCCcCccCCCcccCCceEEECC-CCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            4568999999998777677776 99999999999999521        2599864

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.92  E-value=0.076  Score=34.96  Aligned_cols=44  Identities=36%  Similarity=0.782  Sum_probs=30.3

Q ss_pred             CCcccccccccCcceeccCCCCCcccHhHHHHHHhc----CCCCccccc
Q 036833          142 DCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWLKS----HSSCPLCRA  186 (352)
Q Consensus       142 ~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl~~----~~~CP~CR~  186 (352)
                      .|.||...-..+. +..-..|...||..|++.-+..    .-.||.||.
T Consensus         2 ~C~vC~~~~~~~~-~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDDK-LILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSC-CEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCCC-EEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            4888976544333 4444469999999999887643    225999974

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.99  E-value=0.08  Score=36.54  Aligned_cols=49  Identities=20%  Similarity=0.488  Sum_probs=34.8

Q ss_pred             CCCCCcccccccccCcceeccCCCCCcccHhHHHHHH---h--cCCCCcccccc
Q 036833          139 EGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTWL---K--SHSSCPLCRAT  187 (352)
Q Consensus       139 ~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~Wl---~--~~~~CP~CR~~  187 (352)
                      ....|.||......++.++.-..|+.-||..|+..-.   .  .+-.||.|+..
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            3457999998877766544444699999999986422   1  23479999753

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.97  E-value=0.55  Score=34.21  Aligned_cols=37  Identities=22%  Similarity=0.521  Sum_probs=25.8

Q ss_pred             CCcCCCCCcccccccccCcceeccCCCCCcccHhHHHHH
Q 036833          136 GLVEGSDCSVCLSEFQEHESLRLLPKCNHAFHLPCIDTW  174 (352)
Q Consensus       136 ~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~FH~~Ci~~W  174 (352)
                      ....+..|.|| +.+...+..-.- .|+-+||..|+.+-
T Consensus        11 ~v~~D~mC~vC-~v~t~~~l~pCR-vCtRv~H~~CL~r~   47 (89)
T d1wila_          11 PVVNDEMCDVC-EVWTAESLFPCR-VCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCSCCCTTT-CCCCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred             CCCcCcccccc-Ccccccceecce-eecchhhHHHHHHh
Confidence            34456789999 666654433111 48999999999986