Citrus Sinensis ID: 036903

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
Protein Sequence
LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNYVLNVLVDKSLLRISRYNKLQMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLWEEKKV
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEcccHHHHHHcccccccEEEEccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHccccccccccccEEEEEEccccccHHHHHHHHHcccccHHHHcccccEEEccccEEEccHHHHHHHHHHHHHcccccccccccccccHHHHHHHccccccccEEEEEEEcccccEEEEcHHHHcccccccEEEEEcccccccccccccEEcccccccccccccEEEEccccccccccccccccEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHcccccccccccEEEEEEccHHHHHHccccccEEEEEccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHccEEEEEcccccEEHHHHHHHHHHHHHHHcccccccccEEcccHHHHHHHHHccccccEEEEEEEEcccccEEEEcHHHHHHccccEEEEEEccccccccccccEEEccccccccccccEEEEEcccccccccccccHHHEEEEEccccHHHHHHccccc
Coil and Loop (DISEMBL)
leyltggldrfgpgsriivttrdkrvldnfgvpntniykvrglNYSEALELFCNFafkqsncpdglftLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENlkrssdfeiYDVLKISYnelnpeeksLFLDIACFFAGEDKNLVTKILDDSNYVLNVLVDKSLLRISRYNKLQMHDLLQEMGREIVrqesvkepgkrsrlwdheDVYHVLkrnkgtdvIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFylpnrrgdpimsskvhldqgldylpeeltylhwhgyplrtlptnlitdklvvlnlpcsnvELLWEEKKV
Flexible Loop (DISEMBL)
leyltggldrfgpgsriivttrdkrvldnfgvpntniykVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALenlkrssdfeiyDVLKISYNELNPEEKSLFLDIACFFAGEDKNLVtkilddsnyvLNVLVDKSLLRISRYNKLQMHDLLQEMGreivrqesvkepgkrsrlwdhEDVYhvlkrnkgtdvIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCsnvellweekkv
Low Complexity Region (SEG)
LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNYVLNVLVDKSLLRISRYNKLQMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLWEEKKV
Disordered region (IsUnstruct)
*****GGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNYVLNVLVDKSLLRISRYNKLQMHDLLQEMGR*I*************RLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLW*****
Disordered Region (DISOPRED)
LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNYVLNVLVDKSLLRISRYNKLQMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLWEEKKV
Disordered Region (DISEMBL)
LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNYVLNVLVDKSLLRISRYNKLQMHDLLQEMGREIVRQ**********RLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLWEEKKV
Disordered Region (DISPRO)
LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNYVLNVLVDKSLLRISRYNKLQMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLWEEK**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNYVLNVLVDKSLLRISRYNKLQMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLWEEKKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	323	2.2.26 [Sep-21-2011]
O82500	1095	Putative disease resistan	no	no	0.941	0.277	0.406	3e-55
Q9FH83	1288	Probable WRKY transcripti	no	no	0.956	0.239	0.399	4e-54
Q40392	1144	TMV resistance protein N	N/A	no	0.938	0.264	0.395	5e-54
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.947	0.161	0.391	6e-51
Q9FL92	1372	Probable WRKY transcripti	no	no	0.944	0.222	0.364	2e-46
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.916	0.183	0.375	1e-39
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.944	0.234	0.341	2e-39
Q9LVT1	623	Putative disease resistan	no	no	0.452	0.234	0.325	2e-12
Q9LZ25	811	Probable disease resistan	no	no	0.424	0.168	0.312	6e-12
Q9M667	835	Disease resistance protei	no	no	0.523	0.202	0.300	8e-11

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  215 bits (548), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 128/315 (40%), Positives = 193/315 (61%), Gaps = 11/315 (3%)

Query: 11  FGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLS 70
           FG  SRI+VTT++K++L +  +   ++Y+V   +  EAL +FC  AFKQS+  D L  L+
Sbjct: 314 FGNKSRIVVTTQNKQLLVSHDI--NHMYQVAYPSKQEALTIFCQHAFKQSSPSDDLKHLA 371

Query: 71  KHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKISYNELNPEEK 130
                     PLALRVLGSF+  K K +WE +L  LK   D E+  VLK+ Y+ L+  EK
Sbjct: 372 IEFTTLAGHLPLALRVLGSFMRGKGKEEWEFSLPTLKSRLDGEVEKVLKVGYDGLHDHEK 431

Query: 131 SLFLDIACFFAGEDKNLVTK--ILDDSNYV---LNVLVDKSLLRISRYNKLQMHDLLQEM 185
            LFL IAC F+G+ +N + +  I ++  YV   L VL DKSL++     +++MH LL+++
Sbjct: 432 DLFLHIACIFSGQHENYLKQMIIANNDTYVSFGLQVLADKSLIQKFENGRIEMHSLLRQL 491

Query: 186 GREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIR-DIHLGSRAFE 244
           G+E+VR++S+ EPGKR  L + ++   VL  N GT  + GI LD+ +I+ ++++  + FE
Sbjct: 492 GKEVVRKQSIYEPGKRQFLMNAKETCGVLSNNTGTGTVLGISLDMCEIKEELYISEKTFE 551

Query: 245 NMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTNLITDK 303
            M NL  LKFY+ +   D  M  K+ L ++GL YLP +L  LHW  YPL   P++   + 
Sbjct: 552 EMRNLVYLKFYMSSPIDDK-MKVKLQLPEEGLSYLP-QLRLLHWDAYPLEFFPSSFRPEC 609

Query: 304 LVVLNLPCSNVELLW 318
           LV LN+  S ++ LW
Sbjct: 610 LVELNMSHSKLKKLW 624

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score =  211 bits (538), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 135/338 (39%), Positives = 191/338 (56%), Gaps = 29/338 (8%)

Query: 2   EYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFC-NFAFKQS 60
           E    G D  GPGS II+T+RDK+V    G+    IY+V+GLN  EA +LF  + + K+ 
Sbjct: 263 ESFLEGFDWLGPGSLIIITSRDKQVFCLCGI--NQIYEVQGLNEKEARQLFLLSASIKED 320

Query: 61  NCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKL-DWENALENLKRSSDFEIYDVLK 119
                L  LS  ++ Y  GNPLA+ V G  L  K KL + E A   LKR   F+I D  K
Sbjct: 321 MGEQNLQELSVRVINYANGNPLAISVYGRELKGKKKLSEMETAFLKLKRRPPFKIVDAFK 380

Query: 120 ISYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNYV----LNVLVDKSLLRISRYNK 175
            +Y+ L+  EK++FLDIACFF GE+ N V ++L+   +     ++VLVDK L+ IS  N+
Sbjct: 381 STYDTLSDNEKNIFLDIACFFQGENVNYVIQLLEGCGFFPHVEIDVLVDKCLVTISE-NR 439

Query: 176 LQMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVL---------------KRNKGT 220
           + +H L Q++GREI+  E+V +  +R RLW+   + ++L               KR +G+
Sbjct: 440 VWLHKLTQDIGREIINGETV-QIERRRRLWEPWSIKYLLEYNEHKANGEPKTTFKRAQGS 498

Query: 221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPE 280
           + I G+FLD S +R   L   AF+NM NLRLLK Y  N    P+++        L  LP 
Sbjct: 499 EEIEGLFLDTSNLR-FDLQPSAFKNMLNLRLLKIYCSNPEVHPVINFPTG---SLHSLPN 554

Query: 281 ELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLW 318
           EL  LHW  YPL++LP N     LV +N+P S ++ LW
Sbjct: 555 ELRLLHWENYPLKSLPQNFDPRHLVEINMPYSQLQKLW 592

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  211 bits (538), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 129/326 (39%), Positives = 188/326 (57%), Gaps = 23/326 (7%)

Query: 1   LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS 60
           LEYL G LD FG GSRII+TTRDK +++     N  IY+V  L   E+++LF   AF + 
Sbjct: 310 LEYLAGDLDWFGNGSRIIITTRDKHLIEK----NDIIYEVTALPDHESIQLFKQHAFGKE 365

Query: 61  NCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKI 120
              +    LS  +V Y KG PLAL+V GS LH     +W++A+E++K +S   I D LKI
Sbjct: 366 VPNENFEKLSLEVVNYAKGLPLALKVWGSLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKI 425

Query: 121 SYNELNPEEKSLFLDIACFFAGEDKNLVTKILDD----SNYVLNVLVDKSLLRISRYNKL 176
           SY+ L P+++ +FLDIACF  GE+K+ + +IL+     + Y L +L+DKSL+ IS YN++
Sbjct: 426 SYDGLEPKQQEMFLDIACFLRGEEKDYILQILESCHIGAEYGLRILIDKSLVFISEYNQV 485

Query: 177 QMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDI 236
           QMHDL+Q+MG+ IV  +  K+PG+RSRLW  ++V  V+  N GT  +  I++  S    +
Sbjct: 486 QMHDLIQDMGKYIVNFQ--KDPGERSRLWLAKEVEEVMSNNTGTMAMEAIWVS-SYSSTL 542

Query: 237 HLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLP 296
              ++A +NM  LR+            +  S  H    +DYLP  L       YP  + P
Sbjct: 543 RFSNQAVKNMKRLRVFN----------MGRSSTHY--AIDYLPNNLRCFVCTNYPWESFP 590

Query: 297 TNLITDKLVVLNLPCSNVELLWEEKK 322
           +      LV L L  +++  LW E K
Sbjct: 591 STFELKMLVHLQLRHNSLRHLWTETK 616

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  201 bits (511), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 126/322 (39%), Positives = 175/322 (54%), Gaps = 16/322 (4%)

Query: 6    GGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDG 65
            G L+ FGPGSRII+T+R++RV     +   ++Y+V+ L+  ++L L      +    P+ 
Sbjct: 939  GTLNYFGPGSRIIMTSRNRRVFVLCKI--DHVYEVKPLDIPKSLLLLDRGTCQIVLSPEV 996

Query: 66   LFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKISYNEL 125
              TLS  +V +  GNP  L+ L S        +W    + +K +S   I  + + S   L
Sbjct: 997  YKTLSLELVKFSNGNPQVLQFLSSI-----DREWNKLSQEVKTTSPIYIPGIFEKSCCGL 1051

Query: 126  NPEEKSLFLDIACFFAGEDKNLVTKILDDSNYVLNV----LVDKSLLRISRYNKLQMHDL 181
            +  E+ +FLDIACFF   DK+ V  +LD   +  +V    LVDKSLL IS++N + M   
Sbjct: 1052 DDNERGIFLDIACFFNRIDKDNVAMLLDGCGFSAHVGFRGLVDKSLLTISQHNLVDMLSF 1111

Query: 182  LQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDIHLGSR 241
            +Q  GREIVRQES   PG RSRLW+ + + HV   + GT  I GIFLD+  ++       
Sbjct: 1112 IQATGREIVRQESADRPGDRSRLWNADYIRHVFINDTGTSAIEGIFLDMLNLK-FDANPN 1170

Query: 242  AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLIT 301
             FE M NLRLLK Y             V   QGL+YLP +L  LHW  YPL +LP +   
Sbjct: 1171 VFEKMCNLRLLKLYCSKAE----EKHGVSFPQGLEYLPSKLRLLHWEYYPLSSLPKSFNP 1226

Query: 302  DKLVVLNLPCSNVELLWEEKKV 323
            + LV LNLP S  + LW+ KK 
Sbjct: 1227 ENLVELNLPSSCAKKLWKGKKA 1248

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/343 (36%), Positives = 184/343 (53%), Gaps = 38/343 (11%)

Query: 1   LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS 60
           +E   GG D FGP S II+T++DK V     V    IY+V+GLN  EAL+LF   A    
Sbjct: 256 VESFLGGFDWFGPKSLIIITSKDKSVFRLCRV--NQIYEVQGLNEKEALQLFSLCASIDD 313

Query: 61  NCPDGLFTLSKHIVGYCKGNPLALRVLG-SFLHRKSKLDWENALENLKRSSDFEIYDVLK 119
                L  +S  ++ Y  G+PLAL + G   + +K   + E A   LK        D +K
Sbjct: 314 MAEQNLHEVSMKVIKYANGHPLALNLYGRELMGKKRPPEMEIAFLKLKECPPAIFVDAIK 373

Query: 120 ISYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNYV----LNVLVDKSLLRISRYNK 175
            SY+ LN  EK++FLDIACFF GE+ + V ++L+   +     ++VLV+KSL+ IS  N+
Sbjct: 374 SSYDTLNDREKNIFLDIACFFQGENVDYVMQLLEGCGFFPHVGIDVLVEKSLVTISE-NR 432

Query: 176 LQMHDLLQEMGREIVRQESVKEPGKRSRLW---------------DHEDVYHVLKRNKGT 220
           ++MH+L+Q++GR+I+ +E+ ++  +RSRLW               ++E+     +R +  
Sbjct: 433 VRMHNLIQDVGRQIINRET-RQTKRRSRLWEPCSIKYLLEDKEQNENEEQKTTFERAQVP 491

Query: 221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVH-----LDQGL 275
           + I G+FLD S +    +   AF+NM NLRL K Y  N         +VH     L   L
Sbjct: 492 EEIEGMFLDTSNL-SFDIKHVAFDNMLNLRLFKIYSSN--------PEVHHVNNFLKGSL 542

Query: 276 DYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLW 318
             LP  L  LHW  YPL+ LP N     LV +N+P S ++ LW
Sbjct: 543 SSLPNVLRLLHWENYPLQFLPQNFDPIHLVEINMPYSQLKKLW 585

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score =  164 bits (414), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/330 (37%), Positives = 175/330 (53%), Gaps = 34/330 (10%)

Query: 8   LDRFGPGSRIIVTTRDKRVLDNFGVPNTN-IYKVRGLNYSEALELFCNFAFKQSNCPDGL 66
           LD FG GS II+T+ DK+V   F     N IY V+GLN  EAL+LF    F  +      
Sbjct: 293 LDWFGSGSLIIITSVDKQV---FAFCQINQIYTVQGLNVHEALQLFSQSVFGINEPEQND 349

Query: 67  FTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKISYNELN 126
             LS  ++ Y  GNPLAL + G  L  K K + E A   LK     +I DVLK +Y+ L+
Sbjct: 350 RKLSMKVIDYVNGNPLALSIYGRELMGK-KSEMETAFFELKHCPPLKIQDVLKNAYSALS 408

Query: 127 PEEKSLFLDIACFFAGEDKNLVTKILDDSNY----VLNVLVDKSLLRISRYNKLQMHDLL 182
             EK++ LDIA FF GE  N V ++L++S+Y     ++VLVDK +L IS  N +QM++L+
Sbjct: 409 DNEKNIVLDIAFFFKGETVNYVMQLLEESHYFPRLAIDVLVDKCVLTISE-NTVQMNNLI 467

Query: 183 QEMGREIVRQESVKEPGKRSRLWDHEDVYHVL---------------KRNKGTDVIAGIF 227
           Q+  +EI   E        +R+W+   + ++L               K     + I  IF
Sbjct: 468 QDTCQEIFNGEI----ETCTRMWEPSRIRYLLEYDELEGSGETKAMPKSGLVAEHIESIF 523

Query: 228 LDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHW 287
           LD S ++   +   AF+NM NL+ LK Y  N     I  S ++  +GLD LP EL  LHW
Sbjct: 524 LDTSNVK-FDVKHDAFKNMFNLKFLKIY--NSCSKYI--SGLNFPKGLDSLPYELRLLHW 578

Query: 288 HGYPLRTLPTNLITDKLVVLNLPCSNVELL 317
             YPL++LP +     LV L++P S +  L
Sbjct: 579 ENYPLQSLPQDFDFGHLVKLSMPYSQLHKL 608

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  163 bits (412), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/322 (34%), Positives = 172/322 (53%), Gaps = 17/322 (5%)

Query: 1   LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS 60
           L+ L G  + FG GSRIIV T+D+++L    +    IY+V   +   AL + C  AF + 
Sbjct: 300 LKTLVGKAEWFGSGSRIIVITQDRQLLKAHEI--DLIYEVEFPSEHLALTMLCRSAFGKD 357

Query: 61  NCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKI 120
           + PD    L+  +       PL L VLGS L  ++K  W   +  L+   + +I   L++
Sbjct: 358 SPPDDFKELAFEVAKLAGNLPLGLSVLGSSLKGRTKEWWMEMMPRLRNGLNGDIMKTLRV 417

Query: 121 SYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNYVLNVLVDKSLLRISRYNKLQMHD 180
           SY+ L+ +++ +FL IAC F G + + V  +L D N    +L +KSL+RI+    ++MH+
Sbjct: 418 SYDRLHQKDQDMFLYIACLFNGFEVSYVKDLLKD-NVGFTMLTEKSLIRITPDGYIEMHN 476

Query: 181 LLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGI---FLDLSKIRDIH 237
           LL+++GREI R +S   PGKR  L + ED++ V+    GT+ + GI   F +    R + 
Sbjct: 477 LLEKLGREIDRAKSKGNPGKRRFLTNFEDIHEVVTEKTGTETLLGIRLPFEEYFSTRPLL 536

Query: 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPT 297
           +   +F+ M NL+ L+       GD        L Q L YLP +L  L W   PL++LP+
Sbjct: 537 IDKESFKGMRNLQYLEI---GYYGD--------LPQSLVYLPLKLRLLDWDDCPLKSLPS 585

Query: 298 NLITDKLVVLNLPCSNVELLWE 319
               + LV L +  S +E LWE
Sbjct: 586 TFKAEYLVNLIMKYSKLEKLWE 607

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 20/166 (12%)

Query: 13  PGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLF-TLSK 71
           PG+  +V ++ K V      P T  Y V  LN  +A  LFC  AF Q + P G   +L K
Sbjct: 106 PGTTTLVVSQSKLV-----DPRTT-YDVELLNEHDATSLFCLSAFNQKSVPSGFSKSLVK 159

Query: 72  HIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKR------SSDFEIYDVLKISYNEL 125
            +VG  KG PL+L+VLG+ L+ + +  W  A+E L R      + + +++  ++ +   L
Sbjct: 160 QVVGESKGLPLSLKVLGASLNDRPETYWAIAVERLSRGEPVDETHESKVFAQIEATLENL 219

Query: 126 NPEEKSLFLDIACFFAGED------KNLVTKILD-DSNYVLNVLVD 164
           +P+ K  FLD+  F  G+        N++ KI D +     +VLVD
Sbjct: 220 DPKTKECFLDMGAFPEGKKIPVDVLINMLVKIHDLEDAAAFDVLVD 265

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ25|DRL30_ARATH Probable disease resistance protein At5g04720 OS=Arabidopsis thaliana GN=At5g04720 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 23/160 (14%)

Query: 13  PGSRIIVTTRDKRVLDNFGVPNTNI-YKVRGLNYSEALELFCNFAFKQSNCPDGLF-TLS 70
           PG+  +V +R K       + ++ + Y V  LN  EA  LFC   F Q   P G   +L 
Sbjct: 294 PGTTTLVVSRSK-------LADSRVTYDVELLNEHEATALFCLSVFNQKLVPSGFSQSLV 346

Query: 71  KHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKR------SSDFEIYDVLKISYNE 124
           K +VG CKG PL+L+V+G+ L  + +  WE A+E L R      + +  ++  ++ +   
Sbjct: 347 KQVVGECKGLPLSLKVIGASLKERPEKYWEGAVERLSRGEPADETHESRVFAQIEATLEN 406

Query: 125 LNPEEKSLFLDIACFFAGEDKNLVTKILDDSNYVLNVLVD 164
           L+P+ +  FL +  F   EDK +   +L      +NVLV+
Sbjct: 407 LDPKTRDCFLVLGAF--PEDKKIPLDVL------INVLVE 438

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M667|RPP13_ARATH Disease resistance protein RPP13 OS=Arabidopsis thaliana GN=RPP13 PE=2 SV=2

 Score = 68.2 bits (165), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 96/203 (47%), Gaps = 34/203 (16%)

Query: 14  GSRIIVTTRDKRVLDNFGVPNT-NIYKVRGLNYSEALELFCNFAFKQSNCPD-GLFTLSK 71
           GSR+I+TTR K V +  GV      +K+R L + E+ ELF   AF+     D  L    K
Sbjct: 298 GSRVIITTRIKAVAE--GVDGRFYAHKLRFLTFEESWELFEQRAFRNIQRKDEDLLKTGK 355

Query: 72  HIVGYCKGNPLALRVLGSFLHRKSKLDWENALENL-KRSSDFEIY---DVLKISYNELNP 127
            +V  C+G PL + VL   L RK+  +W +   +L +R  D  I+    V  +S+ EL  
Sbjct: 356 EMVQKCRGLPLCIVVLAGLLSRKTPSEWNDVCNSLWRRLKDDSIHVAPIVFDLSFKELRH 415

Query: 128 EEKSLFLDIACF-------------------FAGEDKNLVTKILDDSNYVLNVLVDKSLL 168
           E K  FL ++ F                   F   D+ ++ +  D + Y +  L+D+SLL
Sbjct: 416 ESKLCFLYLSIFPEDYEIDLEKLIHLLVAEGFIQGDEEMMME--DVARYYIEELIDRSLL 473

Query: 169 RISRYNK-----LQMHDLLQEMG 186
              R  +      ++HDLL+++ 
Sbjct: 474 EAVRRERGKVMSCRIHDLLRDVA 496

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to other resistance proteins, it works independently of ESD1 and NSD1 proteins and does not require the accumulation of salicylic acid, suggesting the existence of an independent signaling pathway. The specificity to avirulence proteins differs in the different cultivars.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
255564976	944	TMV resistance protein N, putative [Rici	0.962	0.329	0.529	9e-84
255561520	465	conserved hypothetical protein [Ricinus	0.959	0.666	0.529	3e-80
255537139	1137	leucine-rich repeat-containing protein,	0.972	0.276	0.523	1e-79
224145028	709	nbs-lrr resistance protein [Populus tric	0.975	0.444	0.504	6e-77
255561496	876	TMV resistance protein N, putative [Rici	0.959	0.353	0.517	7e-77
255544956	1403	leucine-rich repeat containing protein,	0.972	0.223	0.504	1e-76
296090597	1201	unnamed protein product [Vitis vinifera]	0.993	0.267	0.489	1e-76
105922468	581	NBS type disease resistance protein [Pop	0.962	0.535	0.507	3e-76
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.959	0.210	0.484	2e-75
255573549	908	ATP binding protein, putative [Ricinus c	0.987	0.351	0.495	4e-75

>gi|255564976|ref|XP_002523481.1| TMV resistance protein N, putative [Ricinus communis] gi|223537309|gb|EEF38940.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  316 bits (809), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 172/325 (52%), Positives = 232/325 (71%), Gaps = 14/325 (4%)

Query: 1   LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS 60
           LE L G  + FGPGSRII+T+RDK VL N       IYK+  L++ EAL+LF   AF+Q 
Sbjct: 306 LENLAGEHNWFGPGSRIILTSRDKDVLKN---KTDAIYKIEDLDHHEALQLFSLNAFRQE 362

Query: 61  NCPDGLFT-LSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLK 119
            CP   +  LSK ++ Y KGNPL L+VLGSFL++++  +WE+AL  L+RS++ EI +VLK
Sbjct: 363 -CPKADYMKLSKRVINYAKGNPLGLKVLGSFLYQRNIKEWESALHKLERSTNKEIQNVLK 421

Query: 120 ISYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNY----VLNVLVDKSLLRISRYNK 175
           +SY+ L+ EEK +FLD+ACFF GED++ VT+IL+   +     ++VLV KSLL IS  N 
Sbjct: 422 VSYDGLDDEEKDIFLDVACFFNGEDRDFVTRILNGCGFSADIAISVLVSKSLLTISN-NT 480

Query: 176 LQMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRD 235
           L +H+LLQ+MG  IVRQES KEPG+RSRL   EDV HVL +N GT+ I GI+LD+SK R 
Sbjct: 481 LAIHNLLQQMGWGIVRQESTKEPGRRSRLCTSEDVVHVLSKNTGTEAIEGIYLDMSKSRK 540

Query: 236 IHLGSRAFENMTNLRLLKFYLPNRRGDPI-MSSKVHLDQGLDYLPEELTYLHWHGYPLRT 294
           ++L  +AFE M NLRLLKF+       PI M SKV+L +GL+ LP++L+ LHW+GYPL++
Sbjct: 541 VYLSPKAFERMHNLRLLKFH---HSFSPIAMYSKVYLPEGLESLPDKLSCLHWNGYPLKS 597

Query: 295 LPTNLITDKLVVLNLPCSNVELLWE 319
           LP N   + LV L++P S+V+ LWE
Sbjct: 598 LPFNFCAEYLVELSMPHSHVKFLWE 622

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561520|ref|XP_002521770.1| conserved hypothetical protein [Ricinus communis] gi|223538983|gb|EEF40580.1| conserved hypothetical protein [Ricinus communis]

 Score =  304 bits (779), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 171/323 (52%), Positives = 218/323 (67%), Gaps = 13/323 (4%)

Query: 2   EYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSN 61
           E L  G   FG GS++IVT+RD++VL N GV    IY+V GLN +EAL+LF    F Q++
Sbjct: 120 ELLVEGRHLFGEGSKVIVTSRDRQVLKN-GVDE--IYEVDGLNLNEALQLFSINCFNQNH 176

Query: 62  CPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKIS 121
             +    LSK ++ Y KGNPLAL+VLG FL  KSK DWE AL+ LKR+S+  + +VL++S
Sbjct: 177 PLEEFMQLSKRVIYYAKGNPLALKVLGCFLLDKSKQDWEIALDKLKRTSNIGMKNVLRLS 236

Query: 122 YNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNYV----LNVLVDKSLLRISRYNKLQ 177
           Y+ L  E+K +FLDIACFF GED   V +ILD   +     LN LVDKSL+ +S   KL 
Sbjct: 237 YDGLEIEDKEIFLDIACFFKGEDVCFVERILDGCGFYVDIGLNNLVDKSLITVSN-GKLW 295

Query: 178 MHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDIH 237
           MHDL+QEMG E V+QES  EPG+RSRLW HED+YHVL +N GT  + GI LDLS+ R++H
Sbjct: 296 MHDLIQEMGWETVQQESTGEPGERSRLWHHEDIYHVLTKNTGTKAVEGITLDLSETRELH 355

Query: 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLP 296
           L S AF+ M NLRLLKF+      D     KVH  D+GL +   +L YLHW+ YP ++LP
Sbjct: 356 LTSEAFKKMYNLRLLKFH----DSDFEDFCKVHFPDEGLSFHSNKLRYLHWYKYPSKSLP 411

Query: 297 TNLITDKLVVLNLPCSNVELLWE 319
            N   + LV LNLP SNVE LW+
Sbjct: 412 YNFSPENLVELNLPRSNVEQLWQ 434

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537139|ref|XP_002509636.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223549535|gb|EEF51023.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 169/323 (52%), Positives = 215/323 (66%), Gaps = 9/323 (2%)

Query: 1   LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS 60
           L+ L G  D FGPGSRIIVT+RDK+VL        +IY+V+ L + EAL+LF    FK+ 
Sbjct: 304 LDLLVGSHDWFGPGSRIIVTSRDKQVLTKIV---DDIYEVKELVHHEALQLFNQTTFKKK 360

Query: 61  NCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKI 120
             P+    LS  ++ Y KG PLAL+VLGSFL  KSK +WE+AL+ LK++      +VLKI
Sbjct: 361 CVPEDYSYLSDLVIEYAKGVPLALKVLGSFLFGKSKTEWESALDKLKKAPHRATQNVLKI 420

Query: 121 SYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNYV----LNVLVDKSLLRISRYNKL 176
           SY+ L+ EEK++FLDIACFF GE   +VTKILD   +     L +LVDKSL+ I   +K+
Sbjct: 421 SYDGLDAEEKNIFLDIACFFRGESVEMVTKILDGCGFSTKIGLCLLVDKSLITILN-DKV 479

Query: 177 QMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDI 236
           +MHDLLQEMG+EIV QES K+P +R+RLW+HED+ HV  RN GT+ I G+ L+ S I  I
Sbjct: 480 EMHDLLQEMGKEIVLQES-KQPSQRTRLWNHEDILHVFSRNLGTETIEGMCLNTSMINKI 538

Query: 237 HLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLP 296
            L S AF  M NLR LKFY     G     +K+ L QGLD L  EL YLHWHGYPL++LP
Sbjct: 539 ELNSNAFGRMYNLRFLKFYQSYIHGGFKECTKIRLPQGLDSLSNELRYLHWHGYPLKSLP 598

Query: 297 TNLITDKLVVLNLPCSNVELLWE 319
             +    LVVL LP S V+ LW+
Sbjct: 599 ARIHLMNLVVLVLPYSKVKRLWK 621

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145028|ref|XP_002325500.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222862375|gb|EEE99881.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  293 bits (751), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 165/327 (50%), Positives = 212/327 (64%), Gaps = 12/327 (3%)

Query: 1   LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS 60
           +E L    D FGPGSRI+VT+RD++VL N       IY+V  LN SEA +LF    FK +
Sbjct: 91  VECLIERHDMFGPGSRILVTSRDRQVLKNVA---DEIYEVEELNCSEARQLFSLSVFKGN 147

Query: 61  NCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKI 120
           + P     LS   V Y KGNPLAL+VLGSFL  + K DWENAL  L+R+   +IY++LK+
Sbjct: 148 HIPKDYKGLSIRAVNYAKGNPLALKVLGSFLFDQRKEDWENALNKLERNPQLKIYNMLKV 207

Query: 121 SYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNYVLNV----LVDKSLLRISRYNKL 176
           S++ L  EEK++FLDIACFF G+  + V +ILD   +  N+    L ++ L+ IS   KL
Sbjct: 208 SFDALGDEEKNIFLDIACFFKGKQIDYVKRILDGCGFSTNIGVFFLAERCLITISN-GKL 266

Query: 177 QMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDI 236
           +MHDLLQEM  EIVRQES+KE GKRSRLW   DV  VL +N GT+ + GIF D SKI++I
Sbjct: 267 EMHDLLQEMAFEIVRQESIKELGKRSRLWSPRDVNQVLTKNLGTEKVEGIFFDTSKIKEI 326

Query: 237 HLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLP 296
            L S+AF  M NLRLLK Y      +   + KV+L  GL  L +EL YLHW GYPL++LP
Sbjct: 327 KLSSKAFARMYNLRLLKIY----NSEVGKNCKVYLPHGLKSLSDELRYLHWDGYPLKSLP 382

Query: 297 TNLITDKLVVLNLPCSNVELLWEEKKV 323
           +N   + LV LNL  S V  LW+  +V
Sbjct: 383 SNFHPENLVELNLSHSKVRELWKGDQV 409

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561496|ref|XP_002521758.1| TMV resistance protein N, putative [Ricinus communis] gi|223538971|gb|EEF40568.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  293 bits (750), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 167/323 (51%), Positives = 212/323 (65%), Gaps = 13/323 (4%)

Query: 2   EYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSN 61
           E L G  D FGPGSRIIVT+RDK+VL N       IYKV GLN  EAL+LF   AFK+++
Sbjct: 306 ELLPGQHDLFGPGSRIIVTSRDKQVLKNVV---DEIYKVEGLNQHEALQLFSLNAFKKNS 362

Query: 62  CPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKIS 121
             +    +S  +  Y KGNPLALRVLG  L  KSK DWE+ALE L+   + EI  VL+ S
Sbjct: 363 PTNDRVEISTRVADYAKGNPLALRVLGCALFDKSKEDWESALEKLRNVPNGEIQKVLRFS 422

Query: 122 YNELNPEEKSLFLDIACFFAGEDKNLVTKILDDS----NYVLNVLVDKSLLRISRYNKLQ 177
           Y+ L+ EE+++FLDIACFF GED+N  TKILD       ++++ L+DKSL+ + R +KL+
Sbjct: 423 YDGLDREERNIFLDIACFFRGEDRNYATKILDGCYSSVGFIISTLIDKSLVSVYR-SKLE 481

Query: 178 MHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDIH 237
           MHDLLQE G  IVR+E   E  KRSRLW+ +DVY+VL + KGT  I GI LDLS  R++H
Sbjct: 482 MHDLLQETGWSIVREEP--ELEKRSRLWNPKDVYYVLTKKKGTKAIEGISLDLSTTREMH 539

Query: 238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLP 296
           L   AF  M +LR+LKFY  N         K+HL   GL  L +EL YL WH +P R+LP
Sbjct: 540 LECDAFAGMDHLRILKFYTSN--SSIGCKHKMHLPGCGLQSLSDELRYLQWHKFPSRSLP 597

Query: 297 TNLITDKLVVLNLPCSNVELLWE 319
                + LVVL+LP SN+E LW+
Sbjct: 598 PKFCAENLVVLDLPHSNIEQLWK 620

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544956|ref|XP_002513539.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223547447|gb|EEF48942.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 165/327 (50%), Positives = 210/327 (64%), Gaps = 13/327 (3%)

Query: 1   LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS 60
           L  L G    FG GSR+I+T+RDK+VL N       IY+V+GLNY EAL+L     FKQ+
Sbjct: 315 LTTLAGDHSWFGSGSRVIITSRDKQVLVNAA---DRIYEVKGLNYCEALQLLSFKVFKQN 371

Query: 61  NCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKI 120
           +  +G   LSK +V Y KG PLAL VL SFL+ K + +W + LE L+ SS+ EI  VLKI
Sbjct: 372 HPVEGYIELSKRVVNYTKGVPLALNVLASFLYSKQREEWTSTLEKLEESSNLEIQKVLKI 431

Query: 121 SYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNYVLNV----LVDKSLLRISRYNKL 176
           SY+EL   +K +FLDIACFF G D + VT ILD  ++  ++    LVDKSL+ I   NKL
Sbjct: 432 SYDELEWVDKDIFLDIACFFKGADVDYVTTILDGCDFFPSIGISRLVDKSLIAIID-NKL 490

Query: 177 QMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDI 236
            MHDLLQEMG+ IV++ES + PGK SRLW  E ++HVL  N+GT    GIFLD+SKI  +
Sbjct: 491 DMHDLLQEMGQHIVQKESSENPGKNSRLWTPESIHHVLTGNRGTFATEGIFLDISKIEKV 550

Query: 237 HLGSRAFENMTNLRLLKFY---LPNRRGDPIMSSKVHLDQ--GLDYLPEELTYLHWHGYP 291
            L S AF  M NLRLLKFY     + +      S+  LD   GL  LP +L +LHWHGYP
Sbjct: 551 DLSSVAFSKMWNLRLLKFYHNSFLSWKNPTGFVSESTLDSRDGLQSLPNKLCFLHWHGYP 610

Query: 292 LRTLPTNLITDKLVVLNLPCSNVELLW 318
             +LP+N   + LV LN+P S V+ LW
Sbjct: 611 WESLPSNFSMENLVELNMPFSQVKELW 637

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090597|emb|CBI40966.3| unnamed protein product [Vitis vinifera]

 Score =  292 bits (748), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 162/331 (48%), Positives = 211/331 (63%), Gaps = 10/331 (3%)

Query: 1   LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS 60
           LE L G  D FG GSRII+TTRDKR+L + GV    +Y+V+ L ++EA+E    +A KQ 
Sbjct: 300 LECLVGSHDWFGQGSRIIITTRDKRLLMSHGV--RVVYEVKKLVHTEAIEFLGRYASKQQ 357

Query: 61  NCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKI 120
              D    LS  I+ Y +G PL L+VLGSFL   SK +W + L+ LK +    I +VL+I
Sbjct: 358 IVIDEFMELSNSIITYAQGLPLVLKVLGSFLFSMSKHEWRSELDKLKDTPHGRIQEVLRI 417

Query: 121 SYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNYV----LNVLVDKSLLRISRYNKL 176
           SY+ L+ +EK++FLDIACFF GEDK+ V KILD   +     +  L+DKSL+ IS  +K+
Sbjct: 418 SYDGLDDKEKNIFLDIACFFKGEDKDHVIKILDGCGFFAVCGIRGLIDKSLITISNNDKI 477

Query: 177 QMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDI 236
            MHDLLQEMGR+I+RQ S KEPGKRSRLW ++D YHVL +N GT  + GIF +LS I +I
Sbjct: 478 VMHDLLQEMGRKIIRQTSPKEPGKRSRLWIYKDAYHVLSKNTGTQEVEGIFFNLSDIEEI 537

Query: 237 HLGSRAFENMTNLRLLKFY----LPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPL 292
           H  ++AF  M  LRLLKFY      N         KVH+ +   +   EL YLH HGYPL
Sbjct: 538 HFTTKAFAGMDKLRLLKFYDYSPSTNSECTSKRKCKVHIPRDFKFHYNELRYLHLHGYPL 597

Query: 293 RTLPTNLITDKLVVLNLPCSNVELLWEEKKV 323
             LP +     LV L+L CS+V+ LW+  KV
Sbjct: 598 EQLPHDFSPKNLVDLSLSCSDVKQLWKGIKV 628

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922468|gb|ABF81418.1| NBS type disease resistance protein [Populus trichocarpa]

 Score =  291 bits (745), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 164/323 (50%), Positives = 210/323 (65%), Gaps = 12/323 (3%)

Query: 1   LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS 60
           +E L    D FGPGSRI+VT+RD++VL N       IY+V  LN SEA +LF    FK +
Sbjct: 91  VECLIERHDMFGPGSRILVTSRDRQVLKNVA---DEIYEVEELNCSEARQLFSLSVFKGN 147

Query: 61  NCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKI 120
           + P     LS   V Y KGNPLAL+VLGSFL  + K DWENAL  L+R+   +IY++LK+
Sbjct: 148 HIPKDYKGLSIRAVNYAKGNPLALKVLGSFLFDQRKEDWENALNKLERNPQLKIYNMLKV 207

Query: 121 SYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNYVLNV----LVDKSLLRISRYNKL 176
           S++ L  EEK++FLDIACFF G+  + V +ILD   +  N+    L ++ L+ IS   KL
Sbjct: 208 SFDALGDEEKNIFLDIACFFKGKQIDYVKRILDGCGFSTNIGVFFLAERCLITISN-GKL 266

Query: 177 QMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDI 236
           +MHDLLQEM  EIVRQES+KE GKRSRLW   DV  VL +N GT+ + GIF D SKI++I
Sbjct: 267 EMHDLLQEMAFEIVRQESIKELGKRSRLWSPRDVNQVLTKNLGTEKVEGIFFDTSKIKEI 326

Query: 237 HLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLP 296
            L S+AF  M NLRLLK Y      +   + KV+L  GL  L +EL YLHW GYPL++LP
Sbjct: 327 KLSSKAFARMYNLRLLKIY----NSEVGKNCKVYLPHGLKSLSDELRYLHWDGYPLKSLP 382

Query: 297 TNLITDKLVVLNLPCSNVELLWE 319
           +N   + LV LNL  S V  LW+
Sbjct: 383 SNFHPENLVELNLSHSKVRELWK 405

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 156/322 (48%), Positives = 209/322 (64%), Gaps = 12/322 (3%)

Query: 1   LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS 60
           +E L GG + FGPGSRII+T+RDK+VL  +      I++V GLN+ EAL LF   AFK +
Sbjct: 306 IEMLLGGCESFGPGSRIILTSRDKQVLKKYA---DKIFEVEGLNHREALHLFSLHAFKDN 362

Query: 61  NCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKI 120
             P     LS   + Y KGNPLAL+VLGS L  ++  +WE+AL  +++ +  +++ VL+I
Sbjct: 363 QPPYNYMELSVRAINYAKGNPLALKVLGSSLFGRTTKEWESALNKVEKLTRQKVHSVLRI 422

Query: 121 SYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNYV----LNVLVDKSLLRISRYNKL 176
           SY  L+ EEKS+FLDIACFF G   + V +ILD   +      +VL+D+ L++IS  +K+
Sbjct: 423 SYEALDSEEKSIFLDIACFFRGHRVDFVKRILDGCGFKTDIGFSVLIDRCLIKISD-DKV 481

Query: 177 QMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDI 236
           +MHDLLQEM  ++VR+ES+ E G +SRLW  +DVY VL  N GT  + GIFLD+SKIR+I
Sbjct: 482 EMHDLLQEMAHDVVRKESLDELGGQSRLWSPKDVYQVLTNNLGTGKVEGIFLDVSKIREI 541

Query: 237 HLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLP 296
            L S A   M  LRLLK Y      +  +  +VHL  GL+ L EEL YLHW GYPL +LP
Sbjct: 542 ELSSTALGRMYKLRLLKIY----NSEAGVKCRVHLPHGLESLSEELRYLHWDGYPLTSLP 597

Query: 297 TNLITDKLVVLNLPCSNVELLW 318
           +N     LV +NL CS V  LW
Sbjct: 598 SNFRPQNLVEINLSCSKVNRLW 619

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573549|ref|XP_002527699.1| ATP binding protein, putative [Ricinus communis] gi|223532930|gb|EEF34698.1| ATP binding protein, putative [Ricinus communis]

 Score =  287 bits (735), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 162/327 (49%), Positives = 218/327 (66%), Gaps = 8/327 (2%)

Query: 1   LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS 60
           L  LTGGL+ FGPGSRIIVT+RDK+VL   GV   +IY+V+GLN  E+L+LF ++AF+QS
Sbjct: 304 LSSLTGGLNLFGPGSRIIVTSRDKQVLQYCGV--DSIYEVKGLNNHESLQLFSHYAFEQS 361

Query: 61  NCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKI 120
              +  + LS  ++ Y KG PLAL++ GS L  +S   WE+ L  L+   + E+ +VL+I
Sbjct: 362 LPTEAYWNLSNRVLQYAKGLPLALKICGSHLCTRSIEQWESILHRLESPLNSEVQEVLQI 421

Query: 121 SYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNYVLNV----LVDKSLLRISRYNKL 176
           SY  L+  +K +FLDIACFF G+  + V +IL DS +  ++    L+ KSL+ IS   +L
Sbjct: 422 SYYGLDDLDKDIFLDIACFFRGQGIDHVKEILYDSGFYADIGIARLIGKSLISISD-KRL 480

Query: 177 QMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDI 236
           +MH+L+QEMG EIVRQES+ EPG RSRLW+HE++YHVL  NKGT  + GI LDLSKI  +
Sbjct: 481 EMHNLVQEMGWEIVRQESIYEPGSRSRLWNHEEIYHVLTSNKGTGAVRGINLDLSKIHKL 540

Query: 237 HLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLP 296
            L S +F  M NL+ LKFY P  +      SK++  +GL YLP  L  LHW  YPL +LP
Sbjct: 541 CLSSDSFTRMGNLKFLKFYTPFSKYWE-DDSKLYALEGLAYLPASLRLLHWDRYPLNSLP 599

Query: 297 TNLITDKLVVLNLPCSNVELLWEEKKV 323
           +N    +LV L L  S +ELLWE  K+
Sbjct: 600 SNFEPRQLVELILCHSKLELLWEGAKL 626

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.934	0.233	0.455	6.5e-68
TAIR|locus:2146243	900	AT5G18360 [Arabidopsis thalian	0.941	0.337	0.423	6.2e-62
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.981	0.260	0.420	6.8e-58
TAIR|locus:2155189	980	AT5G49140 [Arabidopsis thalian	0.969	0.319	0.416	4e-55
TAIR|locus:2162439	1008	AT5G22690 [Arabidopsis thalian	0.934	0.299	0.416	1.6e-54
TAIR|locus:2136108	1095	AT4G11170 [Arabidopsis thalian	0.941	0.277	0.406	5.9e-54
TAIR|locus:2174900	968	AT5G40060 [Arabidopsis thalian	0.965	0.322	0.404	7.6e-54
TAIR|locus:2161513	780	AT5G17970 [Arabidopsis thalian	0.934	0.387	0.389	9.4e-54
TAIR|locus:2173293	1059	AT5G38340 [Arabidopsis thalian	0.938	0.286	0.411	3.9e-53
TAIR|locus:2039405	1109	AT2G16870 [Arabidopsis thalian	0.956	0.278	0.386	7.4e-53

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 699 (251.1 bits), Expect = 6.5e-68, P = 6.5e-68
 Identities = 143/314 (45%), Positives = 210/314 (66%)

Query:    11 FGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNC-PDGLFTL 69
             FGPGSRIIVTTRD+ +L + G+ N  +YKV+ L   EAL+LFCN+AF++    P G   L
Sbjct:   313 FGPGSRIIVTTRDRHLLLSHGI-NL-VYKVKCLPKKEALQLFCNYAFREEIILPHGFEEL 370

Query:    70 SKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKISYNELNPEE 129
             S   V Y  G PLALRVLGSFL+R+S+++WE+ L  LK     +I +VL++SY+ L+ +E
Sbjct:   371 SVQAVNYASGLPLALRVLGSFLYRRSQIEWESTLARLKTYPHSDIMEVLRVSYDGLDEQE 430

Query:   130 KSLFLDIACFFAGEDKNLVTKILDDSNYV----LNVLVDKSLLRISRYNKLQMHDLLQEM 185
             K++FL I+CF+  +  + V K+LD   Y     + +L +KSL+ +     +++HDLL++M
Sbjct:   431 KAIFLYISCFYNMKQVDYVRKLLDLCGYAAEIGITILTEKSLI-VESNGCVKIHDLLEQM 489

Query:   186 GREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDIHLGSRAFEN 245
             GRE+VRQ++V  P +R  LWD ED+ H+L  N GT ++ GI L+LS+I ++    RAFE 
Sbjct:   490 GRELVRQQAVNNPAQRLLLWDPEDICHLLSENSGTQLVEGISLNLSEISEVFASDRAFEG 549

Query:   246 MTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLV 305
             ++NL+LL FY  +  G+    ++VHL  GL YLP +L YL W GYPL+T+P+    + LV
Sbjct:   550 LSNLKLLNFYDLSFDGE----TRVHLPNGLSYLPRKLRYLRWDGYPLKTMPSRFFPEFLV 605

Query:   306 VLNLPCSNVELLWE 319
              L +  SN+E LW+
Sbjct:   606 ELCMSNSNLEKLWD 619

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2146243 AT5G18360 [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 6.2e-62, Sum P(2) = 6.2e-62
 Identities = 133/314 (42%), Positives = 199/314 (63%)

Query:    11 FGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLS 70
             FG GSRIIVTT +K++L   G+  T IY++   + S++L++FC +AF +S+ PDG   L+
Sbjct:   316 FGSGSRIIVTTENKQLLRAHGI--TCIYELGFPSRSDSLQIFCQYAFGESSAPDGCIELA 373

Query:    71 KHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKISYNELNPEEK 130
               I       PLAL+VLGS L   SK + ++AL  L+ S + +I +VL++ Y+ ++ ++K
Sbjct:   374 TEITKLAGYLPLALKVLGSSLRGMSKDEQKSALPRLRTSLNEDIRNVLRVGYDGIHDKDK 433

Query:   131 SLFLDIACFFAGEDKNLVTKILDDSN----YVLNVLVDKSLLRISRYNK-LQMHDLLQEM 185
              +FL IAC F GE+ + V +IL  S     + L VL  +SL+ ISR N+ + MH+LL+++
Sbjct:   434 VIFLHIACLFNGENVDYVKQILASSGLDVTFGLQVLTSRSLIHISRCNRTITMHNLLEQL 493

Query:   186 GREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDIHLGSRAFEN 245
             GREIV ++S+ EPGKR  L D  ++Y VL  N GT  + GI LD+SKI ++ L  RAF  
Sbjct:   494 GREIVCEQSIAEPGKRQFLMDASEIYDVLADNTGTGAVLGISLDISKINELFLNERAFGG 553

Query:   246 MTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLV 305
             M NL  L+FY  +   D     ++HL +GLDYLP +L  LHW  +P+ ++P +     LV
Sbjct:   554 MHNLLFLRFYKSSSSKD---QPELHLPRGLDYLPRKLRLLHWDAFPMTSMPLSFCPQFLV 610

Query:   306 VLNLPCSNVELLWE 319
             V+N+  S +E LWE
Sbjct:   611 VINIRESQLEKLWE 624

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 6.8e-58, P = 6.8e-58
 Identities = 143/340 (42%), Positives = 204/340 (60%)

Query:     1 LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS 60
             + YL G    +  GSRII+TTRD ++++         Y +  LN  EAL+LF   AF  S
Sbjct:   306 IRYLMGHCKWYQGGSRIIITTRDSKLIETI---KGRKYVLPKLNDREALKLFSLNAFSNS 362

Query:    61 NCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKI 120
                     L+  ++ Y KG+PLAL+VLGS L  +  L WE  L+ LK  S  +IY+VL+ 
Sbjct:   363 FPLKEFEGLTNMVLDYAKGHPLALKVLGSDLCERDDLYWEAKLDRLKSRSHGDIYEVLET 422

Query:   121 SYNELNPEEKSLFLDIACFFAGEDKNLVTKILD----DSNYVLNVLVDKSLLRISRYNKL 176
             SY EL  E+K++FLDIACFF  E+ + VT +L+    D + V+  LVDK L+ +S  N++
Sbjct:   423 SYEELTTEQKNVFLDIACFFRSENVDYVTSLLNSHGVDVSGVVKDLVDKCLITLSD-NRI 481

Query:   177 QMHDLLQEMGREI-VRQESV--------KEPGKRS----RLWDHEDVYHVLKRNKGTDVI 223
             +MHD+LQ M +EI ++ E++           G +     RLWD ED+  +L    GTD I
Sbjct:   482 EMHDMLQTMAKEISLKVETIGIRDCRWLSRHGNQCQWHIRLWDSEDICDLLTEGLGTDKI 541

Query:   224 AGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPN-RRGDPIMSSKVHLDQGLDYLPEEL 282
              GIFLD SK+R + L ++AF+ M NL+ LK Y  +  RG      K+HL +GL +LP EL
Sbjct:   542 RGIFLDTSKLRAMRLSAKAFQGMYNLKYLKIYDSHCSRGCEA-EFKLHLRRGLSFLPNEL 600

Query:   283 TYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLWEEKK 322
             TYLHWHGYPL+++P +     LV L LP S +E +W+++K
Sbjct:   601 TYLHWHGYPLQSIPLDFDPKNLVDLKLPHSQLEEIWDDEK 640

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2155189 AT5G49140 [Arabidopsis thaliana (taxid:3702)]

 Score = 576 (207.8 bits), Expect = 4.0e-55, P = 4.0e-55
 Identities = 135/324 (41%), Positives = 199/324 (61%)

Query:     1 LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS 60
             LE L      FGPGSRIIVTT+DK++L   G    +IY+V+      ALE+ C +AFKQ+
Sbjct:   308 LEALANETRWFGPGSRIIVTTKDKQIL--VGHEINHIYEVKLPCRKTALEILCLYAFKQN 365

Query:    61 NCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKI 120
               PD    +   +       PL LRVLGS +  KSK  W+  L  L  S D ++  +LKI
Sbjct:   366 VAPDDFMDVVVEVAELSGHLPLGLRVLGSHMRGKSKDRWKLELGRLTTSLDEKVEKILKI 425

Query:   121 SYNELNPEEKSLFLDIACFFAGEDKNLVTKIL---D-DSNYVLNVLVDKSLLRISRYNKL 176
             SY++L+  +K+LFL IAC F GE+ +LV ++L   D D +  L +L+DKSL++I+   ++
Sbjct:   426 SYDDLHIRDKALFLHIACMFNGENIDLVKQMLVNSDLDVSLGLQLLLDKSLIQINDDREI 485

Query:   177 QMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIR-D 235
              MH LL +MG+E+V Q S  EPGKR  L++ ++  ++L  N G++ + GI LD S+I+ D
Sbjct:   486 VMHSLLLKMGKEVVCQHS-SEPGKRQFLFNTKETCNILSNNTGSEAVLGISLDTSEIQND 544

Query:   236 IHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL 295
             + +  R FE+M NL+ L+FY  N++ D   S K+HL +GL+YLP  +  LHW  YP++ +
Sbjct:   545 VFMSERVFEDMRNLKFLRFY--NKKIDENPSLKLHLPRGLNYLPA-VRLLHWDSYPMKYI 601

Query:   296 PTNLITDKLVVLNLPCSNVELLWE 319
             P+    + LV L +  S V  LWE
Sbjct:   602 PSQFRPECLVELRMMHSKVVKLWE 625

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2162439 AT5G22690 [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 132/317 (41%), Positives = 192/317 (60%)

Query:    11 FGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSE-ALELFCNFAFKQSNCPDGLFTL 69
             FG GSRIIV T+DK+     G+     Y+V GL   + ALE+F   AF+Q++ P G   L
Sbjct:   319 FGCGSRIIVITKDKQFFRAHGIGL--FYEV-GLPSDKLALEMFSQSAFRQNSPPPGFTEL 375

Query:    70 SKHIVGYCKGN-PLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKISYNEL-NP 127
             +   V    GN PLAL VLGS L  + K DW + L  L++  D +I  +L++ Y+EL N 
Sbjct:   376 ASE-VSKRSGNLPLALNVLGSHLRGRDKEDWIDMLPRLRKGLDGKIEKILRVGYDELSNK 434

Query:   128 EEKSLFLDIACFFAGEDKNLVTKILDDSNYVLNV----LVDKSLLRISRYNKLQMHDLLQ 183
             ++K++F  IAC F G + + +  +L DSN  + +    LVDKSL+RI   + ++MH +LQ
Sbjct:   435 DDKAIFRLIACLFNGAEISYIKLLLADSNLGVTIGLKNLVDKSLIRIG-CDTVEMHSMLQ 493

Query:   184 EMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDIHLGSRAF 243
             EMGREIVR++S+ EPG+R  L D  D+  VL  N GT  + GI  D+S+I ++H+  RAF
Sbjct:   494 EMGREIVREQSIYEPGEREFLVDSTDILDVLNDNTGTKKVLGISFDMSEIEELHIHKRAF 553

Query:   244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLD-YLPEELTYLHWHGYPLRTLPTNLITD 302
             + M NLR L+FY   + G     +++HL +G D + P +L  L W  YP+R +P+N    
Sbjct:   554 KRMPNLRFLRFY--KKLGKQSKEARLHLQEGFDKFFPPKLKLLSWDDYPMRRMPSNFHAG 611

Query:   303 KLVVLNLPCSNVELLWE 319
              LVVL +  S +E LW+
Sbjct:   612 YLVVLRMQHSKLEKLWQ 628

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)]

 Score = 567 (204.7 bits), Expect = 5.9e-54, P = 5.9e-54
 Identities = 128/315 (40%), Positives = 194/315 (61%)

Query:    11 FGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLS 70
             FG  SRI+VTT++K++L +  +   ++Y+V   +  EAL +FC  AFKQS+  D L  L+
Sbjct:   314 FGNKSRIVVTTQNKQLLVSHDI--NHMYQVAYPSKQEALTIFCQHAFKQSSPSDDLKHLA 371

Query:    71 KHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKISYNELNPEEK 130
                       PLALRVLGSF+  K K +WE +L  LK   D E+  VLK+ Y+ L+  EK
Sbjct:   372 IEFTTLAGHLPLALRVLGSFMRGKGKEEWEFSLPTLKSRLDGEVEKVLKVGYDGLHDHEK 431

Query:   131 SLFLDIACFFAGEDKNLVTKILDDSN--YV---LNVLVDKSLLRISRYNKLQMHDLLQEM 185
              LFL IAC F+G+ +N + +++  +N  YV   L VL DKSL++     +++MH LL+++
Sbjct:   432 DLFLHIACIFSGQHENYLKQMIIANNDTYVSFGLQVLADKSLIQKFENGRIEMHSLLRQL 491

Query:   186 GREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRD-IHLGSRAFE 244
             G+E+VR++S+ EPGKR  L + ++   VL  N GT  + GI LD+ +I++ +++  + FE
Sbjct:   492 GKEVVRKQSIYEPGKRQFLMNAKETCGVLSNNTGTGTVLGISLDMCEIKEELYISEKTFE 551

Query:   245 NMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTNLITDK 303
              M NL  LKFY+ +   D  M  K+ L ++GL YLP+ L  LHW  YPL   P++   + 
Sbjct:   552 EMRNLVYLKFYMSSPIDDK-MKVKLQLPEEGLSYLPQ-LRLLHWDAYPLEFFPSSFRPEC 609

Query:   304 LVVLNLPCSNVELLW 318
             LV LN+  S ++ LW
Sbjct:   610 LVELNMSHSKLKKLW 624

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

TAIR|locus:2174900 AT5G40060 [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 7.6e-54, Sum P(2) = 7.6e-54
 Identities = 132/326 (40%), Positives = 190/326 (58%)

Query:     1 LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS 60
             L  L G +  FG GSRIIV T DK +L + G+ N  IY+V   +   ALE+ C +AF+Q+
Sbjct:   116 LNALAGQIQWFGSGSRIIVVTNDKHLLISHGIEN--IYQVCLPSKELALEMLCRYAFRQN 173

Query:    61 NCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKI 120
               PDG   L+  +V +    PL L VLGS+L  ++K  W + L  L++  D +I   L++
Sbjct:   174 TPPDGFKKLAVEVVRHAGILPLGLNVLGSYLRGRNKRYWMDMLPRLRKGLDGKIQKALRV 233

Query:   121 SYNEL-NPEEKSLFLDIACFFAGEDKNLVTKILDDSNYVLNV----LVDKSLLRISRYNK 175
              Y+ L N +++++F  IAC F  E  N +  +L DS+   N+    LVDKSL+ + R N 
Sbjct:   234 GYDGLDNKKDEAIFRHIACLFNFEKVNDIRLLLADSDLNFNIGLENLVDKSLVNV-RSNI 292

Query:   176 LQMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKI-R 234
             ++MH LLQEMGREIVR +S  E G+R  L D ED+  VL  N GT  + GI LD+ +I  
Sbjct:   293 VEMHCLLQEMGREIVRAQS-NEAGEREFLMDTEDICDVLDDNIGTKKMLGISLDVDEIDH 351

Query:   235 DIHLGSRAFENMTNLRLLKFYLPN-RRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR 293
             ++++  +AF+ M NLR L  Y      G  I   ++HL +  DYLP +L  L W  YP+R
Sbjct:   352 ELNVHEKAFQGMRNLRFLNIYTKALMSGQKI---RLHLPENFDYLPPKLKLLCWDKYPMR 408

Query:   294 TLPTNLITDKLVVLNLPCSNVELLWE 319
              LP++   + LV L +  S +E LWE
Sbjct:   409 CLPSSFRPENLVKLKMQESELEKLWE 434

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2161513 AT5G17970 [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 9.4e-54, Sum P(2) = 9.4e-54
 Identities = 122/313 (38%), Positives = 186/313 (59%)

Query:    12 GPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSK 71
             G G+RI+VTT D+++L   G+  T++Y+V   +  EAL++ C  AF +++ P+G   L+ 
Sbjct:   325 GNGTRILVTTEDRQLLKAHGI--THVYEVDYPSRDEALKILCQCAFGKNSAPEGYNDLAV 382

Query:    72 HIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKS 131
              +V      PL L VLG+ L   SK +W NAL  L+ S + +I  +L++ Y  L+ ++K+
Sbjct:   383 EVVELAGYLPLGLSVLGASLRGMSKKEWINALPRLRTSLNGKIEKLLRVCYEGLDEKDKA 442

Query:   132 LFLDIACFFAGED----KNLVTKILDDSNYVLNVLVDKSLLRISRYNKLQMHDLLQEMGR 187
             +FL IAC F G++    K L+ K   D  + L VLVD+SL+ I     + MH LLQ++G+
Sbjct:   443 IFLHIACLFNGKNVDRVKLLLAKSALDVEFGLKVLVDRSLIHIDADGYIVMHCLLQQLGK 502

Query:   188 EIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRD-IHLGSRAFENM 246
             EI R + + EPGKR  L D  ++  VL    GT+ + GI LD+S+I D +++  +AFE M
Sbjct:   503 EITRGQCLDEPGKRKFLVDSLEISDVLADETGTETVLGISLDMSEIEDQVYVSEKAFEKM 562

Query:   247 TNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVV 306
              NL+ L  Y    +  P  + K++L  GLDYLP +L  LHW  YP + LP+    + LV 
Sbjct:   563 PNLQFLWLY----KNFPDEAVKLYLPHGLDYLPRKLRLLHWDSYPKKCLPSKFRPEFLVE 618

Query:   307 LNLPCSNVELLWE 319
             L +  S +E LWE
Sbjct:   619 LTMRDSKLEKLWE 631

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2173293 AT5G38340 [Arabidopsis thaliana (taxid:3702)]

 Score = 559 (201.8 bits), Expect = 3.9e-53, P = 3.9e-53
 Identities = 133/323 (41%), Positives = 193/323 (59%)

Query:    11 FGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLS 70
             FGPGSRII+TT+D+++L+   +   NIYKV   +  EA ++FC +AF Q+   DG   L+
Sbjct:   363 FGPGSRIIITTQDQKLLEAHDI--NNIYKVEFPSKYEAFQIFCTYAFGQNFPKDGFEKLA 420

Query:    71 KHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKISYNELNPEEK 130
               +       PL LRV+GS   R SK DW  AL  LK   D  I  +LK SY+ L+PE+K
Sbjct:   421 WEVTDLLGELPLGLRVMGSHFRRMSKDDWVIALPRLKTRLDANIQSILKFSYDALSPEDK 480

Query:   131 SLFLDIACFFAGEDKNLVTKIL--D--DSNYVLNVLVDKSLLRIS--RYNKLQMHDLLQE 184
              LFL IAC F  E+   V   L  D  D+ + L++L +KSL+ +    Y  L+MH+LL++
Sbjct:   481 DLFLHIACLFNNEEIVKVEDYLALDFLDARHGLHLLAEKSLIDLEGVNYKVLKMHNLLEQ 540

Query:   185 MGREIVR----QESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRD-IHLG 239
             +G+EIVR      S++EP KR  L D +D+  VL    G+  I GI  DL  +   +++ 
Sbjct:   541 LGKEIVRYHPAHHSIREPEKRQFLVDTKDICEVLADGTGSKSIKGICFDLDNLSGRLNIS 600

Query:   240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL 299
              RAFE MTNL+ L+  L +R      S K++L QGL+YLP++L  + W  +P+++LP+N 
Sbjct:   601 ERAFEGMTNLKFLRV-LRDR------SEKLYLPQGLNYLPKKLRLIEWDYFPMKSLPSNF 653

Query:   300 ITDKLVVLNLPCSNVELLWEEKK 322
              T  LV L++  S +E LWE K+
Sbjct:   654 CTTYLVNLHMRKSKLEKLWEGKQ 676

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2039405 AT2G16870 [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 7.4e-53, P = 7.4e-53
 Identities = 125/323 (38%), Positives = 189/323 (58%)

Query:     1 LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS 60
             LE L      FGPGSR+IVTT +K +L   G+ N  +Y V   +  +A+E+ C +AFKQS
Sbjct:   305 LEALANDTTWFGPGSRVIVTTENKEILQRHGIDN--MYHVGFPSDEKAMEILCGYAFKQS 362

Query:    61 NCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKI 120
             +   G   L++ +   C   PL LRV+GS L  K + +W++ +  L    D +I DVL++
Sbjct:   363 SPRPGFNYLAQKVTWLCGNLPLGLRVVGSSLRGKKEDEWKSVIRRLDTIIDRDIEDVLRV 422

Query:   121 SYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSN----YVLNVLVDKSLLRISRYNKL 176
              Y  L+  E+SLFL IA FF  +D +LV  +L D N    + L +LV+KSL+ IS   ++
Sbjct:   423 GYESLHENEQSLFLHIAVFFNCKDVDLVKAMLADDNLDIAHGLKILVNKSLIYISTTGEI 482

Query:   177 QMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDI 236
             +MH LLQ++GR+ + ++   EP KR  L + +++ +VL+ +KGT V++GI  D S I ++
Sbjct:   483 RMHKLLQQVGRQAINRQ---EPWKRLILTNAQEICYVLENDKGTGVVSGISFDTSGISEV 539

Query:   237 HLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLP 296
              L +RA   M+NLR L  Y     G+ IM    H+ + + + P  L  LHW  YP ++LP
Sbjct:   540 ILSNRALRRMSNLRFLSVYKTRHDGNNIM----HIPEDMKF-PPRLRLLHWEAYPSKSLP 594

Query:   297 TNLITDKLVVLNLPCSNVELLWE 319
                  + LV LN+  S +E LWE
Sbjct:   595 LGFCLENLVELNMKDSQLEKLWE 617

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021873001 SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (890 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	323
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-72
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	3e-29

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  242 bits (620), Expect = 1e-72
 Identities = 137/325 (42%), Positives = 195/325 (60%), Gaps = 13/325 (4%)

Query: 1   LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS 60
           L+ L G    FG GSRIIV T+DK  L   G+   +IY+V   +   ALE+FC  AFK++
Sbjct: 311 LDALAGQTQWFGSGSRIIVITKDKHFLRAHGI--DHIYEVCLPSNELALEMFCRSAFKKN 368

Query: 61  NCPDGLFTLSKHIVGYCKGN-PLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLK 119
           + PDG   L+   V    GN PL L VLGS+L  + K DW + L  L+   D +I   L+
Sbjct: 369 SPPDGFMELASE-VALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLR 427

Query: 120 ISYNELN-PEEKSLFLDIACFFAGEDKNLVTKILDDSNYVLNV----LVDKSLLRISRYN 174
           +SY+ LN  ++K++F  IAC F GE  N +  +L +S+  +N+    LVDKSL+ + R +
Sbjct: 428 VSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHV-RED 486

Query: 175 KLQMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIR 234
            ++MH LLQEMG+EIVR +S  EPG+R  L D +D+  VL+ N GT  + GI LD+ +I 
Sbjct: 487 IVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID 545

Query: 235 DIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRT 294
           ++H+   AF+ M NL  LKFY   ++ D     + HL +G DYLP +L  L W  YPLR 
Sbjct: 546 ELHIHENAFKGMRNLLFLKFY--TKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRC 603

Query: 295 LPTNLITDKLVVLNLPCSNVELLWE 319
           +P+N   + LV L +  S +E LW+
Sbjct: 604 MPSNFRPENLVKLQMQGSKLEKLWD 628

syringae 6; Provisional. Length = 1153

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score =  112 bits (283), Expect = 3e-29
 Identities = 55/159 (34%), Positives = 77/159 (48%), Gaps = 10/159 (6%)

Query: 1   LEYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS 60
            + +         GSR+IVTTR + V    G  +   ++V  L   E+ ELF N  F++ 
Sbjct: 115 WDKIGVPFPDGENGSRVIVTTRSESVAGRMGGTSK-PHEVESLEPEESWELFSNKVFEKE 173

Query: 61  NCPDGLF-TLSKHIVGYCKGNPLALRVLGSFLHRKSKLD-WENALENL-----KRSSDFE 113
             P      ++K IV  CKG PLAL+VLG  L  KS +  WE+ LE L      R    E
Sbjct: 174 LPPCPELEEVAKEIVEKCKGLPLALKVLGGLLAFKSTVQEWEHVLEQLNNELAGRDGLNE 233

Query: 114 IYDVLKISYNELNPEEKSLFLDIACFFAGEDKNLVTKIL 152
           +  +L +SY+ L    K  FL +A F   ED N+  + L
Sbjct: 234 VLSILSLSYDNLPMHLKRCFLYLALFP--EDYNIRKEQL 270

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	323
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.93
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.65
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.5
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.36
PRK04841	903	transcriptional regulator MalT; Provisional	98.32
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.22
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.15
PLN03150	623	hypothetical protein; Provisional	98.11
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.06
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.98
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.85
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.8
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.8
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.76
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.68
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.67
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.49
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.49
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.43
PLN03150	623	hypothetical protein; Provisional	97.25
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.17
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.03
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.94
PRK15386	426	type III secretion protein GogB; Provisional	96.88
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.82
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.74
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	96.73
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.72
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.66
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	96.63
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.56
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	96.5
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.5
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	96.44
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.39
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.39
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.34
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.33
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.33
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.27
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	96.22
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.09
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.98
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.93
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.82
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.81
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	95.8
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	95.78
smart00370	26	LRR Leucine-rich repeats, outliers.	95.58
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.58
PF07725	20	LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Le	95.34
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.19
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	95.18
PRK15386	426	type III secretion protein GogB; Provisional	95.02
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	94.94
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	94.66
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	94.52
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.5
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	93.93
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	93.72
smart00370	26	LRR Leucine-rich repeats, outliers.	93.59
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.59
COG3903	414	Predicted ATPase [General function prediction only	93.27
PRK06893	229	DNA replication initiation factor; Validated	91.82
KOG2982	418	consensus Uncharacterized conserved protein [Funct	90.85
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	90.25
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	90.18
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	90.15
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	90.02
COG3899	849	Predicted ATPase [General function prediction only	88.92
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	88.83
KOG2982	418	consensus Uncharacterized conserved protein [Funct	88.41
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.36
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	87.57
PF05729	166	NACHT: NACHT domain	86.33
PRK09087	226	hypothetical protein; Validated	84.62
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	84.42
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	83.8
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	83.13
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.36
PRK00411	394	cdc6 cell division control protein 6; Reviewed	80.33

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-51  Score=405.77  Aligned_cols=303  Identities=26%  Similarity=0.324  Sum_probs=252.4

Q ss_pred             CcchhcCCCCCCCCceEEEEcCChhhHhh-cCCCCcceEEcCCCCHHhHHHHHHHhhhcC-CCCCCChHHHHHHHHHHhc
Q 036903            1 LEYLTGGLDRFGPGSRIIVTTRDKRVLDN-FGVPNTNIYKVRGLNYSEALELFCNFAFKQ-SNCPDGLFTLSKHIVGYCK   78 (323)
Q Consensus         1 le~l~~~~~~~~~gs~IlvTTR~~~v~~~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~i~~~c~   78 (323)
                      ++.+..+++...+||+|++|||++.|+.. ++  +...++++.|+++|||+||++.+|.. ....+.++++|++++++|+
T Consensus       276 w~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~--~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~  353 (889)
T KOG4658|consen  276 WDKIGVPFPSRENGSKVVLTTRSEEVCGRAMG--VDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCG  353 (889)
T ss_pred             HHhcCCCCCCccCCeEEEEEeccHhhhhcccc--CCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhC
Confidence            35688899999999999999999999998 76  68899999999999999999999876 4455669999999999999


Q ss_pred             CCchhHHHHhhhhcCC-ChHHHHHHHHHhhcC-------CcccHHHHHHHHhcCCChhhHhHhhhhcccCCC--CCHHHH
Q 036903           79 GNPLALRVLGSFLHRK-SKLDWENALENLKRS-------SDFEIYDVLKISYNELNPEEKSLFLDIACFFAG--EDKNLV  148 (323)
Q Consensus        79 GlPLAi~~ig~~L~~~-~~~~w~~~l~~l~~~-------~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~--~~~~~l  148 (323)
                      |+|||++++|+.|+.+ +..+|+++.+.+.+.       ..+.+.+++++|||.||++.|.||+|||+||+|  ++++.|
T Consensus       354 GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~L  433 (889)
T KOG4658|consen  354 GLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKL  433 (889)
T ss_pred             ChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHH
Confidence            9999999999999998 778999999987654       246799999999999998899999999999999  556779


Q ss_pred             HHHHhhcch----------------HHHHhhhCCcceEcCC----CeEEecHHHHHHHHHHHhhhccCCC----------
Q 036903          149 TKILDDSNY----------------VLNVLVDKSLLRISRY----NKLQMHDLLQEMGREIVRQESVKEP----------  198 (323)
Q Consensus       149 ~~~w~~~g~----------------~l~~L~~~~ll~~~~~----~~~~mh~lv~~~~~~~~~~~~~~~~----------  198 (323)
                      +.+|+||||                |+++|++++|++....    ..|+|||+|||+|.+++.+.+....          
T Consensus       434 i~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~  513 (889)
T KOG4658|consen  434 IEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGL  513 (889)
T ss_pred             HHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCc
Confidence            999999997                9999999999998642    5799999999999999993322111          


Q ss_pred             ---------CCeeecccchhhHHHhhcCcccceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCccc
Q 036903          199 ---------GKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKV  269 (323)
Q Consensus       199 ---------~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~  269 (323)
                               ...+++..+..............+++++.+..+......+...+|..|+.||||||++|.-        ..
T Consensus       514 ~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~--------l~  585 (889)
T KOG4658|consen  514 SEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS--------LS  585 (889)
T ss_pred             cccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc--------cC
Confidence                     1112222222323333334444467777666553224667788899999999999998763        48


Q ss_pred             ccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcc
Q 036903          270 HLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNV  314 (323)
Q Consensus       270 ~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i  314 (323)
                      +||++|+.|. +||||+++++.+.+||.+++ |+.|++||+..+.-
T Consensus       586 ~LP~~I~~Li-~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~  630 (889)
T KOG4658|consen  586 KLPSSIGELV-HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGR  630 (889)
T ss_pred             cCChHHhhhh-hhhcccccCCCccccchHHHHHHhhheeccccccc
Confidence            8999999999 99999999999999999998 99999999998853

>PLN03210 Resistant to P

Probab=100.00  E-value=1.1e-43  Score=368.05  Aligned_cols=315  Identities=42%  Similarity=0.710  Sum_probs=277.6

Q ss_pred             cchhcCCCCCCCCceEEEEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCc
Q 036903            2 EYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNP   81 (323)
Q Consensus         2 e~l~~~~~~~~~gs~IlvTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlP   81 (323)
                      +.+++...|+++||+||||||+..++..++  ..++|+++.+++++||+||+++||+....++++.+++++|+++|+|+|
T Consensus       312 ~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~--~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLP  389 (1153)
T PLN03210        312 DALAGQTQWFGSGSRIIVITKDKHFLRAHG--IDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLP  389 (1153)
T ss_pred             HHHHhhCccCCCCcEEEEEeCcHHHHHhcC--CCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCc
Confidence            556777788899999999999999998776  678999999999999999999999876666678899999999999999


Q ss_pred             hhHHHHhhhhcCCChHHHHHHHHHhhcCCcccHHHHHHHHhcCCChh-hHhHhhhhcccCCCCCHHHHHHHHhhcch---
Q 036903           82 LALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKISYNELNPE-EKSLFLDIACFFAGEDKNLVTKILDDSNY---  157 (323)
Q Consensus        82 LAi~~ig~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~-~k~cfl~~s~fp~~~~~~~l~~~w~~~g~---  157 (323)
                      ||++++|++|+.++..+|+.++++++.....++..++++||+.|+++ .|.||+++|+|+.+.+++.+..++...++   
T Consensus       390 LAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~  469 (1153)
T PLN03210        390 LGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVN  469 (1153)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCch
Confidence            99999999999999999999999998887889999999999999875 79999999999999888876665555554   


Q ss_pred             -HHHHhhhCCcceEcCCCeEEecHHHHHHHHHHHhhhccCCCCCeeecccchhhHHHhhcCcccceeEEEEeecCCcccc
Q 036903          158 -VLNVLVDKSLLRISRYNKLQMHDLLQEMGREIVRQESVKEPGKRSRLWDHEDVYHVLKRNKGTDVIAGIFLDLSKIRDI  236 (323)
Q Consensus       158 -~l~~L~~~~ll~~~~~~~~~mh~lv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l  236 (323)
                       .++.|++++|++.. .+.+.|||++|++|++++.++. ..++++.++|.+.++..++....+..+++.++++.+....+
T Consensus       470 ~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~  547 (1153)
T PLN03210        470 IGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDEL  547 (1153)
T ss_pred             hChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcccee
Confidence             68999999999986 5789999999999999998886 67888999999999999999999999999999999988888


Q ss_pred             ccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCceEEEcCCCcccc
Q 036903          237 HLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVEL  316 (323)
Q Consensus       237 ~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~  316 (323)
                      .+...+|.+|++|+.|.++.+...  ........+|+.+..++..||+|+|.++.++.+|..+.+.+|+.|++.+|+++.
T Consensus       548 ~i~~~aF~~m~~L~~L~~~~~~~~--~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~  625 (1153)
T PLN03210        548 HIHENAFKGMRNLLFLKFYTKKWD--QKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEK  625 (1153)
T ss_pred             eecHHHHhcCccccEEEEeccccc--ccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccc
Confidence            899999999999999999765421  001112467888888887899999999999999999888999999999999999


Q ss_pred             cccccC
Q 036903          317 LWEEKK  322 (323)
Q Consensus       317 lP~~i~  322 (323)
                      +|++++
T Consensus       626 L~~~~~  631 (1153)
T PLN03210        626 LWDGVH  631 (1153)
T ss_pred             cccccc
Confidence            998764

syringae 6; Provisional

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.93  E-value=1.3e-26  Score=207.10  Aligned_cols=155  Identities=35%  Similarity=0.570  Sum_probs=123.0

Q ss_pred             cchhcCCCCCCCCceEEEEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCC-CCCCChHHHHHHHHHHhcCC
Q 036903            2 EYLTGGLDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQS-NCPDGLFTLSKHIVGYCKGN   80 (323)
Q Consensus         2 e~l~~~~~~~~~gs~IlvTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~~i~~~c~Gl   80 (323)
                      +.+...++.++.||+||||||+..++..++. ....|++++|+.+||++||.+.++... ..++..+..+++|+++|+|+
T Consensus       117 ~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~-~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl  195 (287)
T PF00931_consen  117 EELREPLPSFSSGSKILVTTRDRSVAGSLGG-TDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL  195 (287)
T ss_dssp             -------HCHHSS-EEEEEESCGGGGTTHHS-CEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-
T ss_pred             ccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3456667778889999999999999877651 267999999999999999999997655 34455678899999999999


Q ss_pred             chhHHHHhhhhcCC-ChHHHHHHHHHhhcCC------cccHHHHHHHHhcCCChhhHhHhhhhcccCCC--CCHHHHHHH
Q 036903           81 PLALRVLGSFLHRK-SKLDWENALENLKRSS------DFEIYDVLKISYNELNPEEKSLFLDIACFFAG--EDKNLVTKI  151 (323)
Q Consensus        81 PLAi~~ig~~L~~~-~~~~w~~~l~~l~~~~------~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~--~~~~~l~~~  151 (323)
                      |||++++|++|+.+ +..+|+.+++++....      ...+..++.+||+.||++.|+||+|||+||++  ++.+.++++
T Consensus       196 PLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~l  275 (287)
T PF00931_consen  196 PLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRL  275 (287)
T ss_dssp             HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHH
Confidence            99999999999765 7889999998865442      46799999999999999999999999999999  457779999


Q ss_pred             Hhhcch
Q 036903          152 LDDSNY  157 (323)
Q Consensus       152 w~~~g~  157 (323)
                      |+++|+
T Consensus       276 W~~e~~  281 (287)
T PF00931_consen  276 WVAEGF  281 (287)
T ss_dssp             HTT-HH
T ss_pred             HHHCCC
Confidence            999986

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.65  E-value=2.9e-09  Score=85.10  Aligned_cols=89  Identities=18%  Similarity=0.239  Sum_probs=56.2

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-  300 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-  300 (323)
                      +++.+.+.++   .+.+.+..|..++.|.||||.++++       ....+|..+-.+. .||.|.|+.+.++.||..++ 
T Consensus        80 klr~lnvgmn---rl~~lprgfgs~p~levldltynnl-------~e~~lpgnff~m~-tlralyl~dndfe~lp~dvg~  148 (264)
T KOG0617|consen   80 KLRILNVGMN---RLNILPRGFGSFPALEVLDLTYNNL-------NENSLPGNFFYMT-TLRALYLGDNDFEILPPDVGK  148 (264)
T ss_pred             hhhheecchh---hhhcCccccCCCchhhhhhcccccc-------ccccCCcchhHHH-HHHHHHhcCCCcccCChhhhh
Confidence            4444444433   3556677889999999999998877       3345566555555 56666666666666666665 


Q ss_pred             CCCceEEEcCCCccccccccc
Q 036903          301 TDKLVVLNLPCSNVELLWEEK  321 (323)
Q Consensus       301 L~~L~~L~l~~~~i~~lP~~i  321 (323)
                      |++||.|.+++|.+-+||++|
T Consensus       149 lt~lqil~lrdndll~lpkei  169 (264)
T KOG0617|consen  149 LTNLQILSLRDNDLLSLPKEI  169 (264)
T ss_pred             hcceeEEeeccCchhhCcHHH
Confidence            666666666666655566554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.50  E-value=1.2e-07  Score=63.89  Aligned_cols=58  Identities=22%  Similarity=0.338  Sum_probs=50.3

Q ss_pred             CCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcc
Q 036903          247 TNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNV  314 (323)
Q Consensus       247 ~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i  314 (323)
                      ++|++|++++|.+         ..+|. .+..++ +|++|++++|.+..+|.. +. +++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l---------~~i~~~~f~~l~-~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKL---------TEIPPDSFSNLP-NLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTE---------SEECTTTTTTGT-TESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCC---------CccCHHHHcCCC-CCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999987         66664 678899 999999999999999875 46 99999999999975

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.36  E-value=2e-07  Score=58.13  Aligned_cols=39  Identities=23%  Similarity=0.270  Sum_probs=29.4

Q ss_pred             CceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccccc
Q 036903          281 ELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       281 ~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~  319 (323)
                      +|++|++++|+|+.+|..++ |++|++|++++|.|+.+|.
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            77888888888888888776 8888888888888777653

...

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.32  E-value=1.2e-05  Score=83.08  Aligned_cols=174  Identities=14%  Similarity=0.170  Sum_probs=114.4

Q ss_pred             CCCCceEEEEcCChhhHh--hcCCCCcceEEcC----CCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhH
Q 036903           11 FGPGSRIIVTTRDKRVLD--NFGVPNTNIYKVR----GLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLAL   84 (323)
Q Consensus        11 ~~~gs~IlvTTR~~~v~~--~~~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi   84 (323)
                      ..++.++|||||...-..  .... ......+.    +|+.+|+.++|.......-     -.+.+..|.+.|+|.|+++
T Consensus       149 ~~~~~~lv~~sR~~~~~~~~~l~~-~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~-----~~~~~~~l~~~t~Gwp~~l  222 (903)
T PRK04841        149 QPENLTLVVLSRNLPPLGIANLRV-RDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI-----EAAESSRLCDDVEGWATAL  222 (903)
T ss_pred             CCCCeEEEEEeCCCCCCchHhHHh-cCcceecCHHhCCCCHHHHHHHHHhccCCCC-----CHHHHHHHHHHhCChHHHH
Confidence            345678889999842211  1100 12345555    9999999999987653221     1345788999999999999


Q ss_pred             HHHhhhhcCCChHHHHHHHHHhhcCCcccHHHHHHHH-hcCCChhhHhHhhhhcccCCCCCHHHHHHHHhhcch--HHHH
Q 036903           85 RVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKIS-YNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNY--VLNV  161 (323)
Q Consensus        85 ~~ig~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~s-y~~L~~~~k~cfl~~s~fp~~~~~~~l~~~w~~~g~--~l~~  161 (323)
                      ..++..++..+.. .......+.......+...+.-. ++.||++.++.+...|+++ .+..+.+..+....+-  .+++
T Consensus       223 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~~~~~~L~~  300 (903)
T PRK04841        223 QLIALSARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEENGQMRLEE  300 (903)
T ss_pred             HHHHHHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCCcHHHHHHH
Confidence            9999877644210 11112222221233466554444 8999999999999999987 6775554444432222  8999


Q ss_pred             hhhCCcceE-cC--CCeEEecHHHHHHHHHHHhh
Q 036903          162 LVDKSLLRI-SR--YNKLQMHDLLQEMGREIVRQ  192 (323)
Q Consensus       162 L~~~~ll~~-~~--~~~~~mh~lv~~~~~~~~~~  192 (323)
                      |.+.+++.. .+  ...|+.|++++++.+.....
T Consensus       301 l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~  334 (903)
T PRK04841        301 LERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQW  334 (903)
T ss_pred             HHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHh
Confidence            999999653 32  23799999999999987643

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.22  E-value=4.4e-08  Score=78.38  Aligned_cols=89  Identities=21%  Similarity=0.214  Sum_probs=73.7

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-  300 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-  300 (323)
                      .++.+-+..+++..-.+++.+| .|..||.|.|..+.+         .-+|..+++|+ +|+.|.++.+.+-+||..++ 
T Consensus       103 ~levldltynnl~e~~lpgnff-~m~tlralyl~dndf---------e~lp~dvg~lt-~lqil~lrdndll~lpkeig~  171 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFF-YMTTLRALYLGDNDF---------EILPPDVGKLT-NLQILSLRDNDLLSLPKEIGD  171 (264)
T ss_pred             hhhhhhccccccccccCCcchh-HHHHHHHHHhcCCCc---------ccCChhhhhhc-ceeEEeeccCchhhCcHHHHH
Confidence            3444444444444444555544 678899999999987         78999999999 99999999999999999999 


Q ss_pred             CCCceEEEcCCCccccccccc
Q 036903          301 TDKLVVLNLPCSNVELLWEEK  321 (323)
Q Consensus       301 L~~L~~L~l~~~~i~~lP~~i  321 (323)
                      |..|+.|.+++|+++.+|.++
T Consensus       172 lt~lrelhiqgnrl~vlppel  192 (264)
T KOG0617|consen  172 LTRLRELHIQGNRLTVLPPEL  192 (264)
T ss_pred             HHHHHHHhcccceeeecChhh
Confidence            999999999999999999875

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.15  E-value=4.8e-07  Score=85.68  Aligned_cols=74  Identities=20%  Similarity=0.215  Sum_probs=50.9

Q ss_pred             cccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCc-cCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCc
Q 036903          236 IHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGL-DYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSN  313 (323)
Q Consensus       236 l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i-~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~  313 (323)
                      +...+..+...|++-||+|++|++         ..+|.++ -+|. .|-||+|++|+++.||+.+. |.+||+|+|++|.
T Consensus       115 L~EvP~~LE~AKn~iVLNLS~N~I---------etIPn~lfinLt-DLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NP  184 (1255)
T KOG0444|consen  115 LREVPTNLEYAKNSIVLNLSYNNI---------ETIPNSLFINLT-DLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNP  184 (1255)
T ss_pred             hhhcchhhhhhcCcEEEEcccCcc---------ccCCchHHHhhH-hHhhhccccchhhhcCHHHHHHhhhhhhhcCCCh
Confidence            334455566777777777777766         5566653 3566 67778888888888888886 8888888887773


Q ss_pred             -----cccccc
Q 036903          314 -----VELLWE  319 (323)
Q Consensus       314 -----i~~lP~  319 (323)
                           +++||.
T Consensus       185 L~hfQLrQLPs  195 (1255)
T KOG0444|consen  185 LNHFQLRQLPS  195 (1255)
T ss_pred             hhHHHHhcCcc
Confidence                 456664

>PLN03150 hypothetical protein; Provisional

Probab=98.11  E-value=3.2e-06  Score=83.45  Aligned_cols=75  Identities=15%  Similarity=0.176  Sum_probs=65.0

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC-CCCCCCC-CCCceEEEcCCCccc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR-TLPTNLI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~-~LP~~i~-L~~L~~L~l~~~~i~  315 (323)
                      ..+..+.++++|+.|+|++|.+.        ..+|..++.++ +|++|+|++|.+. .+|..++ |.+|++|+|++|++.
T Consensus       433 ~ip~~i~~L~~L~~L~Ls~N~l~--------g~iP~~~~~l~-~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~  503 (623)
T PLN03150        433 FIPNDISKLRHLQSINLSGNSIR--------GNIPPSLGSIT-SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS  503 (623)
T ss_pred             cCCHHHhCCCCCCEEECCCCccc--------CcCChHHhCCC-CCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence            44567899999999999999872        47898999999 9999999999887 7899998 999999999999876


Q ss_pred             -cccccc
Q 036903          316 -LLWEEK  321 (323)
Q Consensus       316 -~lP~~i  321 (323)
                       .+|..+
T Consensus       504 g~iP~~l  510 (623)
T PLN03150        504 GRVPAAL  510 (623)
T ss_pred             ccCChHH
Confidence             777654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.06  E-value=2e-06  Score=53.59  Aligned_cols=41  Identities=24%  Similarity=0.340  Sum_probs=35.2

Q ss_pred             CCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCC
Q 036903          247 TNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPT  297 (323)
Q Consensus       247 ~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~  297 (323)
                      ++|++|+++++.+         ..+|..+++|+ +|++|++++|.++++|.
T Consensus         1 ~~L~~L~l~~N~i---------~~l~~~l~~l~-~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQI---------TDLPPELSNLP-NLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS----------SSHGGHGTTCT-TSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCC---------cccCchHhCCC-CCCEEEecCCCCCCCcC
Confidence            5799999999988         78888899999 99999999999987764

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.98  E-value=4.2e-06  Score=84.99  Aligned_cols=67  Identities=22%  Similarity=0.237  Sum_probs=56.3

Q ss_pred             CCCceEEEEeCCC--CCCCCCCCcccccCCC-ccCcCCCceeEEecCC-CCCCCCCCCC-CCCceEEEcCCCcccccccc
Q 036903          246 MTNLRLLKFYLPN--RRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGY-PLRTLPTNLI-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       246 ~~~LrvL~L~~~~--~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~-~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      .+.|++|-+.++.  +         ...+.. +..++ .||+|||++| .+.+||.+|+ |.|||+|++++|.|++||.+
T Consensus       544 ~~~L~tLll~~n~~~l---------~~is~~ff~~m~-~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~  613 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWL---------LEISGEFFRSLP-LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG  613 (889)
T ss_pred             CCccceEEEeecchhh---------hhcCHHHHhhCc-ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH
Confidence            3468999888775  3         334333 77799 9999999988 8999999998 99999999999999999998


Q ss_pred             cC
Q 036903          321 KK  322 (323)
Q Consensus       321 i~  322 (323)
                      ++
T Consensus       614 l~  615 (889)
T KOG4658|consen  614 LG  615 (889)
T ss_pred             HH
Confidence            64

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.85  E-value=4.1e-06  Score=75.59  Aligned_cols=69  Identities=17%  Similarity=0.215  Sum_probs=61.6

Q ss_pred             hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccccc
Q 036903          241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~  319 (323)
                      ...+.+.+|.||||.++.+         +.+|+.++.|+ +|.|||+++|.|..||.+.| | ||+.|-+.+|.++++-.
T Consensus       246 e~~~~L~~l~vLDLRdNkl---------ke~Pde~clLr-sL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr  314 (565)
T KOG0472|consen  246 EHLKHLNSLLVLDLRDNKL---------KEVPDEICLLR-SLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRR  314 (565)
T ss_pred             HHhcccccceeeecccccc---------ccCchHHHHhh-hhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHH
Confidence            4456899999999999987         88999999998 99999999999999999998 8 99999999998876644


Q ss_pred             c
Q 036903          320 E  320 (323)
Q Consensus       320 ~  320 (323)
                      +
T Consensus       315 ~  315 (565)
T KOG0472|consen  315 E  315 (565)
T ss_pred             H
Confidence            3

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.80  E-value=2.4e-06  Score=81.15  Aligned_cols=78  Identities=21%  Similarity=0.199  Sum_probs=62.7

Q ss_pred             cccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCC
Q 036903          234 RDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCS  312 (323)
Q Consensus       234 ~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~  312 (323)
                      |++.-.+.++..+.+|+-+||+.|++         ..+|+.+-+|+ +||.|+|++|.|++|.-.++ ..+|++|+++.|
T Consensus       209 RTl~N~Ptsld~l~NL~dvDlS~N~L---------p~vPecly~l~-~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN  278 (1255)
T KOG0444|consen  209 RTLDNIPTSLDDLHNLRDVDLSENNL---------PIVPECLYKLR-NLRRLNLSGNKITELNMTEGEWENLETLNLSRN  278 (1255)
T ss_pred             chhhcCCCchhhhhhhhhccccccCC---------CcchHHHhhhh-hhheeccCcCceeeeeccHHHHhhhhhhccccc
Confidence            44555566778888888888888876         67888888888 88888888888888888887 788888888888


Q ss_pred             ccccccccc
Q 036903          313 NVELLWEEK  321 (323)
Q Consensus       313 ~i~~lP~~i  321 (323)
                      .+..||+.+
T Consensus       279 QLt~LP~av  287 (1255)
T KOG0444|consen  279 QLTVLPDAV  287 (1255)
T ss_pred             hhccchHHH
Confidence            888888753

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.80  E-value=2.3e-05  Score=81.61  Aligned_cols=71  Identities=17%  Similarity=0.206  Sum_probs=46.8

Q ss_pred             chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC-CCCCCCC-CCCceEEEcCCCccc-c
Q 036903          240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR-TLPTNLI-TDKLVVLNLPCSNVE-L  316 (323)
Q Consensus       240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~-~LP~~i~-L~~L~~L~l~~~~i~-~  316 (323)
                      +..|.++++|++|+|++|.+.        ..+|..++.++ +|++|+|++|.+. .+|..++ +.+|++|++++|.+. .
T Consensus       181 p~~~~~l~~L~~L~L~~n~l~--------~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  251 (968)
T PLN00113        181 PNSLTNLTSLEFLTLASNQLV--------GQIPRELGQMK-SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP  251 (968)
T ss_pred             ChhhhhCcCCCeeeccCCCCc--------CcCChHHcCcC-CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc
Confidence            445566666666666666541        34666777777 7777777777655 5677776 777777777777654 4


Q ss_pred             ccc
Q 036903          317 LWE  319 (323)
Q Consensus       317 lP~  319 (323)
                      +|.
T Consensus       252 ~p~  254 (968)
T PLN00113        252 IPS  254 (968)
T ss_pred             cCh
Confidence            554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.76  E-value=1.2e-05  Score=65.99  Aligned_cols=83  Identities=23%  Similarity=0.233  Sum_probs=31.2

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCcc-CcCCCceeEEecCCCCCCCCCC--
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLD-YLPEELTYLHWHGYPLRTLPTN--  298 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~-~L~~~Lr~L~l~~~~i~~LP~~--  298 (323)
                      .++.+.+..+.+..+    +.+..+++|++|++++|.+         ..+++.+. .++ +|+.|++++|+|..+-.-  
T Consensus        43 ~L~~L~Ls~N~I~~l----~~l~~L~~L~~L~L~~N~I---------~~i~~~l~~~lp-~L~~L~L~~N~I~~l~~l~~  108 (175)
T PF14580_consen   43 KLEVLDLSNNQITKL----EGLPGLPRLKTLDLSNNRI---------SSISEGLDKNLP-NLQELYLSNNKISDLNELEP  108 (175)
T ss_dssp             T--EEE-TTS--S------TT----TT--EEE--SS------------S-CHHHHHH-T-T--EEE-TTS---SCCCCGG
T ss_pred             CCCEEECCCCCCccc----cCccChhhhhhcccCCCCC---------CccccchHHhCC-cCCEEECcCCcCCChHHhHH
Confidence            445554444433322    2356677788888877776         44443342 467 788888887777776543  


Q ss_pred             CC-CCCceEEEcCCCcccccc
Q 036903          299 LI-TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       299 i~-L~~L~~L~l~~~~i~~lP  318 (323)
                      +. +++|++|++.+|.+.+-|
T Consensus       109 L~~l~~L~~L~L~~NPv~~~~  129 (175)
T PF14580_consen  109 LSSLPKLRVLSLEGNPVCEKK  129 (175)
T ss_dssp             GGG-TT--EEE-TT-GGGGST
T ss_pred             HHcCCCcceeeccCCcccchh
Confidence            23 777888888877766543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.68  E-value=4.4e-05  Score=79.58  Aligned_cols=74  Identities=18%  Similarity=0.114  Sum_probs=59.4

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC-CCCCCCC-CCCceEEEcCCCccc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR-TLPTNLI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~-~LP~~i~-L~~L~~L~l~~~~i~  315 (323)
                      ..+..|.++++|+.|+|++|.+.        ..+|..++.++ +|++|++++|.+. .+|..++ +++|++|++.+|.+.
T Consensus       203 ~~p~~l~~l~~L~~L~L~~n~l~--------~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  273 (968)
T PLN00113        203 QIPRELGQMKSLKWIYLGYNNLS--------GEIPYEIGGLT-SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS  273 (968)
T ss_pred             cCChHHcCcCCccEEECcCCccC--------CcCChhHhcCC-CCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence            34567788999999999888762        46788888898 9999999988775 6788887 999999999998775


Q ss_pred             -ccccc
Q 036903          316 -LLWEE  320 (323)
Q Consensus       316 -~lP~~  320 (323)
                       .+|..
T Consensus       274 ~~~p~~  279 (968)
T PLN00113        274 GPIPPS  279 (968)
T ss_pred             ccCchh
Confidence             56654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.67  E-value=2.7e-05  Score=52.22  Aligned_cols=41  Identities=20%  Similarity=0.286  Sum_probs=37.2

Q ss_pred             CceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCccccccccc
Q 036903          281 ELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVELLWEEK  321 (323)
Q Consensus       281 ~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~~lP~~i  321 (323)
                      +|++|++++|++..+|.. ++ +++|++|++++|.++.+|.+.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~   44 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDA   44 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTT
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHH
Confidence            799999999999999975 56 999999999999999998753

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.49  E-value=0.0001  Score=60.53  Aligned_cols=62  Identities=23%  Similarity=0.310  Sum_probs=29.1

Q ss_pred             CCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCccccc
Q 036903          245 NMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNVELL  317 (323)
Q Consensus       245 ~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i~~l  317 (323)
                      .+.+|++|+|++|.+         ..++ .+..|+ +|+.|++++|.|++++..+ . +++|++|++++|+|..+
T Consensus        40 ~l~~L~~L~Ls~N~I---------~~l~-~l~~L~-~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l  103 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQI---------TKLE-GLPGLP-RLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDL  103 (175)
T ss_dssp             T-TT--EEE-TTS-----------S--T-T----T-T--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SC
T ss_pred             hhcCCCEEECCCCCC---------cccc-CccChh-hhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCCh
Confidence            567899999999987         5554 577888 9999999999999997765 4 89999999999988765

>PLN03210 Resistant to P

Probab=97.49  E-value=0.0002  Score=75.84  Aligned_cols=67  Identities=28%  Similarity=0.299  Sum_probs=41.6

Q ss_pred             hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCC-CCCCCCCCCCCCCceEEEcCCC-cccccc
Q 036903          243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGY-PLRTLPTNLITDKLVVLNLPCS-NVELLW  318 (323)
Q Consensus       243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~-~i~~LP~~i~L~~L~~L~l~~~-~i~~lP  318 (323)
                      +..+++|+.|+|.+|..        ...+|.+++.|+ +|++|++++| .++.+|..+++++|++|++++| .++.+|
T Consensus       653 ls~l~~Le~L~L~~c~~--------L~~lp~si~~L~-~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p  721 (1153)
T PLN03210        653 LSMATNLETLKLSDCSS--------LVELPSSIQYLN-KLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP  721 (1153)
T ss_pred             cccCCcccEEEecCCCC--------ccccchhhhccC-CCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc
Confidence            44455566666655542        255677777777 7777777776 6777777666666666666665 344444

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.43  E-value=1.3e-05  Score=72.44  Aligned_cols=69  Identities=19%  Similarity=0.141  Sum_probs=59.6

Q ss_pred             hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCcc-CcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccccc
Q 036903          242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLD-YLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~-~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~  319 (323)
                      .|.++..|+-|.+..+.+         .-+|..++ .|. +|..|||+.|+++++|..++ |++|+.||+++|.|..||-
T Consensus       223 ef~gcs~L~Elh~g~N~i---------~~lpae~~~~L~-~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~  292 (565)
T KOG0472|consen  223 EFPGCSLLKELHVGENQI---------EMLPAEHLKHLN-SLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPY  292 (565)
T ss_pred             CCCccHHHHHHHhcccHH---------HhhHHHHhcccc-cceeeeccccccccCchHHHHhhhhhhhcccCCccccCCc
Confidence            566777777777777765         67888776 787 99999999999999999999 9999999999999999996


Q ss_pred             c
Q 036903          320 E  320 (323)
Q Consensus       320 ~  320 (323)
                      +
T Consensus       293 s  293 (565)
T KOG0472|consen  293 S  293 (565)
T ss_pred             c
Confidence            5

>PLN03150 hypothetical protein; Provisional

Probab=97.25  E-value=0.00022  Score=70.56  Aligned_cols=65  Identities=20%  Similarity=0.238  Sum_probs=56.6

Q ss_pred             CceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC-CCCCCCC-CCCceEEEcCCCccc-cccccc
Q 036903          248 NLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR-TLPTNLI-TDKLVVLNLPCSNVE-LLWEEK  321 (323)
Q Consensus       248 ~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~-~LP~~i~-L~~L~~L~l~~~~i~-~lP~~i  321 (323)
                      .++.|+|.++.+.        ..+|..++.|+ +|++|+|++|.+. .+|..++ +.+|++|+|++|++. .+|+.+
T Consensus       419 ~v~~L~L~~n~L~--------g~ip~~i~~L~-~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l  486 (623)
T PLN03150        419 FIDGLGLDNQGLR--------GFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL  486 (623)
T ss_pred             EEEEEECCCCCcc--------ccCCHHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH
Confidence            4788999998862        57899999999 9999999999887 8999998 999999999999887 677643

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.17  E-value=6.8e-05  Score=74.29  Aligned_cols=70  Identities=17%  Similarity=0.228  Sum_probs=44.3

Q ss_pred             chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccc
Q 036903          240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP  318 (323)
                      +..+..+..|+.|.++.+.+         ..+|.++.++. +|+||.|.+|.+..+|.++. +++|+.|+++.|.....|
T Consensus        61 p~~it~l~~L~~ln~s~n~i---------~~vp~s~~~~~-~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~P  130 (1081)
T KOG0618|consen   61 PIQITLLSHLRQLNLSRNYI---------RSVPSSCSNMR-NLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIP  130 (1081)
T ss_pred             CchhhhHHHHhhcccchhhH---------hhCchhhhhhh-cchhheeccchhhcCchhHHhhhcccccccchhccCCCc
Confidence            33445555566666665554         55666666666 67777776666667777765 677777777766666665


Q ss_pred             c
Q 036903          319 E  319 (323)
Q Consensus       319 ~  319 (323)
                      .
T Consensus       131 l  131 (1081)
T KOG0618|consen  131 L  131 (1081)
T ss_pred             h
Confidence            4

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.03  E-value=0.00086  Score=67.39  Aligned_cols=60  Identities=18%  Similarity=0.244  Sum_probs=35.9

Q ss_pred             CceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCceEEEcCCCcccccccc
Q 036903          248 NLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       248 ~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~lP~~  320 (323)
                      +|+.|+|++|.+         ..+|..+.  . +|++|++++|++..+|..+. .+|++|++++|+++.+|.+
T Consensus       242 ~L~~L~Ls~N~L---------~~LP~~l~--s-~L~~L~Ls~N~L~~LP~~l~-~sL~~L~Ls~N~Lt~LP~~  301 (754)
T PRK15370        242 TIQEMELSINRI---------TELPERLP--S-ALQSLDLFHNKISCLPENLP-EELRYLSVYDNSIRTLPAH  301 (754)
T ss_pred             cccEEECcCCcc---------CcCChhHh--C-CCCEEECcCCccCccccccC-CCCcEEECCCCccccCccc
Confidence            455555555544         34554442  2 67777777777777766542 4677777777777766653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.94  E-value=0.0012  Score=66.45  Aligned_cols=62  Identities=18%  Similarity=0.163  Sum_probs=47.4

Q ss_pred             CCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCceEEEcCCCccccccccc
Q 036903          247 TNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLWEEK  321 (323)
Q Consensus       247 ~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~lP~~i  321 (323)
                      ++|+.|++++|.+         ..+|..+.   .+|+.|+|++|++..+|..+. .+|+.|++++|+++.+|+++
T Consensus       220 ~nL~~L~Ls~N~L---------tsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~-s~L~~L~Ls~N~L~~LP~~l  281 (754)
T PRK15370        220 GNIKTLYANSNQL---------TSIPATLP---DTIQEMELSINRITELPERLP-SALQSLDLFHNKISCLPENL  281 (754)
T ss_pred             cCCCEEECCCCcc---------ccCChhhh---ccccEEECcCCccCcCChhHh-CCCCEEECcCCccCcccccc
Confidence            4788888888776         56676543   378888888888888887653 57899999999998888754

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.88  E-value=0.0012  Score=61.14  Aligned_cols=59  Identities=19%  Similarity=0.177  Sum_probs=36.4

Q ss_pred             CceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCC-CCCCCCCCCCCCCceEEEcCCC---cccccccccC
Q 036903          248 NLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGY-PLRTLPTNLITDKLVVLNLPCS---NVELLWEEKK  322 (323)
Q Consensus       248 ~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~-~i~~LP~~i~L~~L~~L~l~~~---~i~~lP~~i~  322 (323)
                      +|+.|.+.+|..        ...+|+.+   +.+|++|++++| .+..||.+     |++|++.++   .+..||.+++
T Consensus        73 sLtsL~Lsnc~n--------LtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s-----Le~L~L~~n~~~~L~~LPssLk  135 (426)
T PRK15386         73 ELTEITIENCNN--------LTTLPGSI---PEGLEKLTVCHCPEISGLPES-----VRSLEIKGSATDSIKNVPNGLT  135 (426)
T ss_pred             CCcEEEccCCCC--------cccCCchh---hhhhhheEccCcccccccccc-----cceEEeCCCCCcccccCcchHh
Confidence            477777777653        24556544   337888888877 77777765     444445443   3677777654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.82  E-value=0.00039  Score=60.88  Aligned_cols=60  Identities=20%  Similarity=0.222  Sum_probs=39.6

Q ss_pred             CCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccc
Q 036903          246 MTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVEL  316 (323)
Q Consensus       246 ~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~  316 (323)
                      -+.|..|||++|.+         ..+.+++.-+| .+|.|++++|.|..+-+ .. |++|+.|||++|.+.+
T Consensus       283 Wq~LtelDLS~N~I---------~~iDESvKL~P-kir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~  343 (490)
T KOG1259|consen  283 WQELTELDLSGNLI---------TQIDESVKLAP-KLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAE  343 (490)
T ss_pred             Hhhhhhccccccch---------hhhhhhhhhcc-ceeEEeccccceeeehh-hhhcccceEeecccchhHh
Confidence            35566777777765         55666666666 77777777776666655 44 7777777777765544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.74  E-value=0.00039  Score=36.18  Aligned_cols=17  Identities=35%  Similarity=0.737  Sum_probs=7.8

Q ss_pred             ceeEEecCCCCCCCCCC
Q 036903          282 LTYLHWHGYPLRTLPTN  298 (323)
Q Consensus       282 Lr~L~l~~~~i~~LP~~  298 (323)
                      |++|++++|+++++|++
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44444444444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=96.73  E-value=0.0003  Score=66.50  Aligned_cols=63  Identities=27%  Similarity=0.292  Sum_probs=46.0

Q ss_pred             CceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccccc
Q 036903          248 NLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       248 ~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      -|+||-+++|.+         +.+|..|+-++ .|..|+.+.|++..+|..++ |..|+.|+++.|++..||++
T Consensus       144 pLkvli~sNNkl---------~~lp~~ig~~~-tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~E  207 (722)
T KOG0532|consen  144 PLKVLIVSNNKL---------TSLPEEIGLLP-TLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEE  207 (722)
T ss_pred             cceeEEEecCcc---------ccCCcccccch-hHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHH
Confidence            367777777765         66777777666 77777777777777777776 77777777777777777764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.72  E-value=0.00038  Score=69.20  Aligned_cols=70  Identities=19%  Similarity=0.185  Sum_probs=54.4

Q ss_pred             hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccccc
Q 036903          242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      +..+.-+|++||++++.+         .++|..|..+. +|+.|+++.|.|.++|.+++ +.+|++|+|.+|.++.+|.+
T Consensus        40 ~~~~~v~L~~l~lsnn~~---------~~fp~~it~l~-~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~  109 (1081)
T KOG0618|consen   40 FVEKRVKLKSLDLSNNQI---------SSFPIQITLLS-HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPAS  109 (1081)
T ss_pred             HhhheeeeEEeecccccc---------ccCCchhhhHH-HHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchh
Confidence            333333388888888876         67888888888 88888888888888888776 88888888888888888865


Q ss_pred             c
Q 036903          321 K  321 (323)
Q Consensus       321 i  321 (323)
                      +
T Consensus       110 ~  110 (1081)
T KOG0618|consen  110 I  110 (1081)
T ss_pred             H
Confidence            4

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.66  E-value=0.0032  Score=63.31  Aligned_cols=17  Identities=18%  Similarity=0.073  Sum_probs=10.5

Q ss_pred             CceEEEcCCCccccccc
Q 036903          303 KLVVLNLPCSNVELLWE  319 (323)
Q Consensus       303 ~L~~L~l~~~~i~~lP~  319 (323)
                      +|++|+|++|+++.+|.
T Consensus       343 ~Lq~LdLS~N~Ls~LP~  359 (788)
T PRK15387        343 GLQELSVSDNQLASLPT  359 (788)
T ss_pred             ccceEecCCCccCCCCC
Confidence            56666666666666553

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=96.63  E-value=0.00031  Score=66.36  Aligned_cols=71  Identities=23%  Similarity=0.228  Sum_probs=59.6

Q ss_pred             chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccc
Q 036903          240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP  318 (323)
                      +..+..+..||.|.+..++.         ..+|..++.|+  |..||++.|++..||-.|. +++||+|-|.+|-++.-|
T Consensus       182 psql~~l~slr~l~vrRn~l---------~~lp~El~~Lp--Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  182 PSQLGYLTSLRDLNVRRNHL---------EDLPEELCSLP--LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             hHHhhhHHHHHHHHHhhhhh---------hhCCHHHhCCc--eeeeecccCceeecchhhhhhhhheeeeeccCCCCCCh
Confidence            34456777888888888876         78899988875  8899999999999999997 999999999999998877


Q ss_pred             ccc
Q 036903          319 EEK  321 (323)
Q Consensus       319 ~~i  321 (323)
                      ..|
T Consensus       251 AqI  253 (722)
T KOG0532|consen  251 AQI  253 (722)
T ss_pred             HHH
Confidence            643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.56  E-value=0.0006  Score=63.67  Aligned_cols=63  Identities=29%  Similarity=0.241  Sum_probs=47.6

Q ss_pred             CceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccccc
Q 036903          248 NLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       248 ~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      +|+.|+++++.+         ..+|..++.++ +|+.|++++|++.++|...+ +.+|+.|+++++.+..+|..
T Consensus       141 nL~~L~l~~N~i---------~~l~~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~  204 (394)
T COG4886         141 NLKELDLSDNKI---------ESLPSPLRNLP-NLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPE  204 (394)
T ss_pred             hcccccccccch---------hhhhhhhhccc-cccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchh
Confidence            677777777766         56666777777 77888887777777877774 77777778877777777764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=96.50  E-value=0.0014  Score=31.69  Aligned_cols=16  Identities=25%  Similarity=0.239  Sum_probs=7.4

Q ss_pred             CceEEEcCCCcccccc
Q 036903          303 KLVVLNLPCSNVELLW  318 (323)
Q Consensus       303 ~L~~L~l~~~~i~~lP  318 (323)
                      +|++|+|++|++++||
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5666666666666655

...

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.50  E-value=0.002  Score=61.31  Aligned_cols=82  Identities=18%  Similarity=0.146  Sum_probs=51.5

Q ss_pred             eecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-CC-CCCce
Q 036903          228 LDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLV  305 (323)
Q Consensus       228 ~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~  305 (323)
                      +++++.+.-.+....|.++++|+.+.+..|.+         +.+|...+..- ||..|+|.+|.|.++-.+ .+ +.-|+
T Consensus        83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L---------t~IP~f~~~sg-hl~~L~L~~N~I~sv~se~L~~l~alr  152 (873)
T KOG4194|consen   83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL---------TRIPRFGHESG-HLEKLDLRHNLISSVTSEELSALPALR  152 (873)
T ss_pred             eeccccccccCcHHHHhcCCcceeeeeccchh---------hhccccccccc-ceeEEeeeccccccccHHHHHhHhhhh
Confidence            45555545566677788888888888887765         56666555554 666666666655555433 34 55666


Q ss_pred             EEEcCCCccccccc
Q 036903          306 VLNLPCSNVELLWE  319 (323)
Q Consensus       306 ~L~l~~~~i~~lP~  319 (323)
                      +|||+.|.|.++|.
T Consensus       153 slDLSrN~is~i~~  166 (873)
T KOG4194|consen  153 SLDLSRNLISEIPK  166 (873)
T ss_pred             hhhhhhchhhcccC
Confidence            66666666655554

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=96.44  E-value=0.037  Score=49.74  Aligned_cols=153  Identities=15%  Similarity=0.072  Sum_probs=91.4

Q ss_pred             CceEEEEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHhhhhcC
Q 036903           14 GSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHR   93 (323)
Q Consensus        14 gs~IlvTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig~~L~~   93 (323)
                      .+-|.+|||...+....-......+.+++++.++..+++.+.+......  --.+....|++.|+|.|-.+..++..+  
T Consensus       130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~--  205 (305)
T TIGR00635       130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRV--  205 (305)
T ss_pred             eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHH--
Confidence            5667778887655433210123568999999999999999887533221  113567889999999997665554432  


Q ss_pred             CChHHHHHHHHHhhcC--C---cccHHHHHHHHhcCCChhhHhHhh-hhcccCCC-CCHHHHHHHHhhcch----HHH-H
Q 036903           94 KSKLDWENALENLKRS--S---DFEIYDVLKISYNELNPEEKSLFL-DIACFFAG-EDKNLVTKILDDSNY----VLN-V  161 (323)
Q Consensus        94 ~~~~~w~~~l~~l~~~--~---~~~i~~~l~~sy~~L~~~~k~cfl-~~s~fp~~-~~~~~l~~~w~~~g~----~l~-~  161 (323)
                           |... ......  .   .......+...|..+++..+..+. ....+..+ +..+.+.........    .++ .
T Consensus       206 -----~~~a-~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~  279 (305)
T TIGR00635       206 -----RDFA-QVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPY  279 (305)
T ss_pred             -----HHHH-HHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHH
Confidence                 1110 000000  0   011222255667888888877665 54666544 555555554433333    567 6


Q ss_pred             hhhCCcceEcCCCeE
Q 036903          162 LVDKSLLRISRYNKL  176 (323)
Q Consensus       162 L~~~~ll~~~~~~~~  176 (323)
                      |++++|+.....|++
T Consensus       280 Li~~~li~~~~~g~~  294 (305)
T TIGR00635       280 LLQIGFLQRTPRGRI  294 (305)
T ss_pred             HHHcCCcccCCchhh
Confidence            999999987655543

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.39  E-value=0.00024  Score=64.29  Aligned_cols=83  Identities=19%  Similarity=0.184  Sum_probs=58.2

Q ss_pred             EeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecC-CCCCCCCCCC-C-CCC
Q 036903          227 FLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHG-YPLRTLPTNL-I-TDK  303 (323)
Q Consensus       227 ~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~-~~i~~LP~~i-~-L~~  303 (323)
                      .++++....-.+++.+|+.+++||.|||+.|.+.        ..-|+.+..|+ .|-.|-+-+ |+|+.||... + |..
T Consensus        71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is--------~I~p~AF~GL~-~l~~Lvlyg~NkI~~l~k~~F~gL~s  141 (498)
T KOG4237|consen   71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS--------FIAPDAFKGLA-SLLSLVLYGNNKITDLPKGAFGGLSS  141 (498)
T ss_pred             EEEeccCCcccCChhhccchhhhceecccccchh--------hcChHhhhhhH-hhhHHHhhcCCchhhhhhhHhhhHHH
Confidence            3444444445678899999999999999999873        33467777777 555555544 6888888874 4 888


Q ss_pred             ceEEEcCCCcccccc
Q 036903          304 LVVLNLPCSNVELLW  318 (323)
Q Consensus       304 L~~L~l~~~~i~~lP  318 (323)
                      ||-|.+.-|++.-++
T Consensus       142 lqrLllNan~i~Cir  156 (498)
T KOG4237|consen  142 LQRLLLNANHINCIR  156 (498)
T ss_pred             HHHHhcChhhhcchh
Confidence            777777666654433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.39  E-value=0.0018  Score=33.63  Aligned_cols=20  Identities=20%  Similarity=0.164  Sum_probs=18.1

Q ss_pred             CceEEEcCCCcccccccccC
Q 036903          303 KLVVLNLPCSNVELLWEEKK  322 (323)
Q Consensus       303 ~L~~L~l~~~~i~~lP~~i~  322 (323)
                      +|++||+++|+++++|.+++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEESEEGTTTT
T ss_pred             CccEEECCCCcCEeCChhhc
Confidence            68999999999999999864

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.34  E-value=0.0032  Score=63.32  Aligned_cols=56  Identities=21%  Similarity=0.131  Sum_probs=39.4

Q ss_pred             CCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccc
Q 036903          247 TNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       247 ~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~  315 (323)
                      .+|+.|++++|.+         ..+|...   . +|++|++++|.++.||.+++ +.+|+.|+|++|.+.
T Consensus       402 s~L~~LdLS~N~L---------ssIP~l~---~-~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        402 SELKELMVSGNRL---------TSLPMLP---S-GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             cCCCEEEccCCcC---------CCCCcch---h-hhhhhhhccCcccccChHHhhccCCCeEECCCCCCC
Confidence            3456666666655         3455422   2 67778888888888888886 888888888888765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.33  E-value=0.0019  Score=60.26  Aligned_cols=70  Identities=21%  Similarity=0.215  Sum_probs=61.8

Q ss_pred             hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCc-CCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccccc
Q 036903          242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYL-PEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L-~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~  319 (323)
                      ....++.+..|++.++.+         .++|..++.+ . +|++|+++++.+..+|..++ +++|+.|++.+|.+.++|.
T Consensus       111 ~~~~~~~l~~L~l~~n~i---------~~i~~~~~~~~~-nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~  180 (394)
T COG4886         111 ELLELTNLTSLDLDNNNI---------TDIPPLIGLLKS-NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPK  180 (394)
T ss_pred             hhhcccceeEEecCCccc---------ccCccccccchh-hcccccccccchhhhhhhhhccccccccccCCchhhhhhh
Confidence            345567899999999987         7888888877 5 89999999999999998888 9999999999999999998


Q ss_pred             cc
Q 036903          320 EK  321 (323)
Q Consensus       320 ~i  321 (323)
                      ..
T Consensus       181 ~~  182 (394)
T COG4886         181 LL  182 (394)
T ss_pred             hh
Confidence            53

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.33  E-value=0.00098  Score=60.46  Aligned_cols=70  Identities=19%  Similarity=0.188  Sum_probs=53.3

Q ss_pred             CchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCcccc
Q 036903          239 GSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNVEL  316 (323)
Q Consensus       239 ~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i~~  316 (323)
                      +...|.++++||+|+|++|.+.        ..-+.++..+. +++.|.|.+|+++.+.+.+ . |..|++|+|.+|+|+.
T Consensus       266 P~~cf~~L~~L~~lnlsnN~i~--------~i~~~aFe~~a-~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~  336 (498)
T KOG4237|consen  266 PAKCFKKLPNLRKLNLSNNKIT--------RIEDGAFEGAA-ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITT  336 (498)
T ss_pred             hHHHHhhcccceEeccCCCccc--------hhhhhhhcchh-hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEE
Confidence            4466999999999999999872        22355677777 8888888888888777765 4 8888888888887765


Q ss_pred             c
Q 036903          317 L  317 (323)
Q Consensus       317 l  317 (323)
                      +
T Consensus       337 ~  337 (498)
T KOG4237|consen  337 V  337 (498)
T ss_pred             E
Confidence            4

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.27  E-value=0.002  Score=56.58  Aligned_cols=38  Identities=24%  Similarity=0.177  Sum_probs=20.8

Q ss_pred             CceeEEecCCCCCCCCCCCCCCCceEEEcCCCcccccc
Q 036903          281 ELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       281 ~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~lP  318 (323)
                      +.+.|.|++|.|+.|..--.|+.|..||+++|+|+++-
T Consensus       353 NIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ld  390 (490)
T KOG1259|consen  353 NIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELD  390 (490)
T ss_pred             CEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHH
Confidence            44444444444444432222677777777777776653

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=96.22  E-value=0.024  Score=51.59  Aligned_cols=155  Identities=13%  Similarity=0.054  Sum_probs=93.5

Q ss_pred             CceEEEEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHhhhhcC
Q 036903           14 GSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHR   93 (323)
Q Consensus        14 gs~IlvTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig~~L~~   93 (323)
                      .+-|..|||...+...........+.+++++.++..+++.+.+......-  -++....|++.|+|.|-.+..+...+  
T Consensus       151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~--~~~~~~~ia~~~~G~pR~a~~~l~~~--  226 (328)
T PRK00080        151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEI--DEEGALEIARRSRGTPRIANRLLRRV--  226 (328)
T ss_pred             ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHcCCCchHHHHHHHHH--
Confidence            45677788766554332101235789999999999999998875432211  23568899999999996554444432  


Q ss_pred             CChHHHHHHHHH--hhcCCcccHHHHHHHHhcCCChhhHhHhh-hhcccCCC-CCHHHHHHHHhhcch----HHH-Hhhh
Q 036903           94 KSKLDWENALEN--LKRSSDFEIYDVLKISYNELNPEEKSLFL-DIACFFAG-EDKNLVTKILDDSNY----VLN-VLVD  164 (323)
Q Consensus        94 ~~~~~w~~~l~~--l~~~~~~~i~~~l~~sy~~L~~~~k~cfl-~~s~fp~~-~~~~~l~~~w~~~g~----~l~-~L~~  164 (323)
                         ..|......  ............+...+..|++..+..+. ....|+.+ +..+.+...+.....    .++ .|++
T Consensus       227 ---~~~a~~~~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~  303 (328)
T PRK00080        227 ---RDFAQVKGDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQ  303 (328)
T ss_pred             ---HHHHHHcCCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHH
Confidence               122211100  00001122334456677888888888775 66667655 666666555433333    455 8999


Q ss_pred             CCcceEcCCCe
Q 036903          165 KSLLRISRYNK  175 (323)
Q Consensus       165 ~~ll~~~~~~~  175 (323)
                      .+|++....|+
T Consensus       304 ~~li~~~~~gr  314 (328)
T PRK00080        304 QGFIQRTPRGR  314 (328)
T ss_pred             cCCcccCCchH
Confidence            99998765553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.11  E-value=0.0028  Score=63.23  Aligned_cols=82  Identities=20%  Similarity=0.211  Sum_probs=51.0

Q ss_pred             cceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-
Q 036903          220 TDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN-  298 (323)
Q Consensus       220 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~-  298 (323)
                      .+.++++.+..... ....+...+.+|++|+.||++++++         ..+ .+|+.|+ +|+.|.+++-.++.-+.- 
T Consensus       147 LPsL~sL~i~~~~~-~~~dF~~lc~sFpNL~sLDIS~TnI---------~nl-~GIS~Lk-nLq~L~mrnLe~e~~~~l~  214 (699)
T KOG3665|consen  147 LPSLRSLVISGRQF-DNDDFSQLCASFPNLRSLDISGTNI---------SNL-SGISRLK-NLQVLSMRNLEFESYQDLI  214 (699)
T ss_pred             CcccceEEecCcee-cchhHHHHhhccCccceeecCCCCc---------cCc-HHHhccc-cHHHHhccCCCCCchhhHH
Confidence            44566665543322 1112344567899999999999987         334 5677777 777777766555544432 


Q ss_pred             --CCCCCceEEEcCCCc
Q 036903          299 --LITDKLVVLNLPCSN  313 (323)
Q Consensus       299 --i~L~~L~~L~l~~~~  313 (323)
                        ++|++|++||++...
T Consensus       215 ~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  215 DLFNLKKLRVLDISRDK  231 (699)
T ss_pred             HHhcccCCCeeeccccc
Confidence              347777777776653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.09  E-value=0.00049  Score=53.51  Aligned_cols=73  Identities=16%  Similarity=0.129  Sum_probs=62.6

Q ss_pred             ccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccc
Q 036903          237 HLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       237 ~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~  315 (323)
                      .+++.+-.+++.+..|+|+++.+         ..+|..+..++ .||.|+++.|.+...|.-|- |.+|-.|+..++.+.
T Consensus        67 ~fp~kft~kf~t~t~lNl~~nei---------sdvPeE~Aam~-aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   67 KFPKKFTIKFPTATTLNLANNEI---------SDVPEELAAMP-ALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hCCHHHhhccchhhhhhcchhhh---------hhchHHHhhhH-HhhhcccccCccccchHHHHHHHhHHHhcCCCCccc
Confidence            34445556677899999999987         78999999999 99999999999999999986 999999999999888


Q ss_pred             cccc
Q 036903          316 LLWE  319 (323)
Q Consensus       316 ~lP~  319 (323)
                      ++|-
T Consensus       137 eid~  140 (177)
T KOG4579|consen  137 EIDV  140 (177)
T ss_pred             cCcH
Confidence            8874

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.98  E-value=0.0037  Score=58.89  Aligned_cols=66  Identities=20%  Similarity=0.279  Sum_probs=48.9

Q ss_pred             hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCceEEEcCCCccccccc
Q 036903          243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~lP~  319 (323)
                      +..+.+|++|+++++.+         .++ ..+..|+ .|+.|++++|.|..++..-.|.+|+.|++.+|.+..++.
T Consensus       114 l~~~~~L~~L~ls~N~I---------~~i-~~l~~l~-~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNKI---------TKL-EGLSTLT-LLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             hhhhhcchheecccccc---------ccc-cchhhcc-chhhheeccCcchhccCCccchhhhcccCCcchhhhhhh
Confidence            56678888888888876         444 3567777 788888888888777766558888888888887766654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.93  E-value=0.0015  Score=65.14  Aligned_cols=84  Identities=17%  Similarity=0.128  Sum_probs=60.1

Q ss_pred             eEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-C
Q 036903          223 IAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-T  301 (323)
Q Consensus       223 ~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L  301 (323)
                      ++.+-+.....-.-.+....-..++.||.|.+.+-.+       ....+..-..++| +|+.||+|+|++..| ..|+ |
T Consensus       124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~-------~~~dF~~lc~sFp-NL~sLDIS~TnI~nl-~GIS~L  194 (699)
T KOG3665|consen  124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF-------DNDDFSQLCASFP-NLRSLDISGTNISNL-SGISRL  194 (699)
T ss_pred             hhhcCccccchhhccHHHHHhhhCcccceEEecCcee-------cchhHHHHhhccC-ccceeecCCCCccCc-HHHhcc
Confidence            4444333333223344555567899999999998766       2344445566788 999999999999999 7777 9


Q ss_pred             CCceEEEcCCCccc
Q 036903          302 DKLVVLNLPCSNVE  315 (323)
Q Consensus       302 ~~L~~L~l~~~~i~  315 (323)
                      +|||+|.+++=.++
T Consensus       195 knLq~L~mrnLe~e  208 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFE  208 (699)
T ss_pred             ccHHHHhccCCCCC
Confidence            99999999875554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.82  E-value=0.0055  Score=52.69  Aligned_cols=69  Identities=23%  Similarity=0.281  Sum_probs=50.0

Q ss_pred             hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC---C-CCCceEEEcCCCcccc
Q 036903          241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL---I-TDKLVVLNLPCSNVEL  316 (323)
Q Consensus       241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i---~-L~~L~~L~l~~~~i~~  316 (323)
                      ..|-.+++|+.|+++.|...      ....++-....++ +|++|++++|.|.. ++++   . |.||..|++.+|....
T Consensus        59 ~~~P~Lp~LkkL~lsdn~~~------~~~~l~vl~e~~P-~l~~l~ls~Nki~~-lstl~pl~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen   59 TNFPKLPKLKKLELSDNYRR------VSGGLEVLAEKAP-NLKVLNLSGNKIKD-LSTLRPLKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             ccCCCcchhhhhcccCCccc------ccccceehhhhCC-ceeEEeecCCcccc-ccccchhhhhcchhhhhcccCCccc
Confidence            34567789999999998431      1244555566678 99999999998775 4444   3 7888899999997654


Q ss_pred             c
Q 036903          317 L  317 (323)
Q Consensus       317 l  317 (323)
                      +
T Consensus       131 l  131 (260)
T KOG2739|consen  131 L  131 (260)
T ss_pred             c
Confidence            3

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.81  E-value=0.0051  Score=29.72  Aligned_cols=16  Identities=31%  Similarity=0.445  Sum_probs=9.4

Q ss_pred             CceeEEecCCCCCCCC
Q 036903          281 ELTYLHWHGYPLRTLP  296 (323)
Q Consensus       281 ~Lr~L~l~~~~i~~LP  296 (323)
                      +|+.|++++|++++||
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            6778888888777776

...

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=95.80  E-value=0.0039  Score=56.13  Aligned_cols=90  Identities=20%  Similarity=0.234  Sum_probs=54.9

Q ss_pred             ceeEEEEeecCCccc--cccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC-CC
Q 036903          221 DVIAGIFLDLSKIRD--IHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL-PT  297 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~--l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L-P~  297 (323)
                      ..++.+.+..+.+..  .......+..+++|+.|++++|.+..    .....++..+..++ +|++|++++|.+... +.
T Consensus       165 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~----~~~~~l~~~~~~~~-~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD----EGASALAETLASLK-SLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh----HHHHHHHHHhcccC-CCCEEecCCCcCchHHHH
Confidence            356666555443321  11122345566789999998887620    01123455677777 899999999877641 11


Q ss_pred             CC------CCCCceEEEcCCCccc
Q 036903          298 NL------ITDKLVVLNLPCSNVE  315 (323)
Q Consensus       298 ~i------~L~~L~~L~l~~~~i~  315 (323)
                      .+      ....|+.|++.+|.++
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHHhccCCCceEEEccCCCCC
Confidence            11      1478999999999774

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=95.78  E-value=0.0042  Score=59.24  Aligned_cols=77  Identities=22%  Similarity=0.230  Sum_probs=43.2

Q ss_pred             cccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC--CCCCceEEEcCC
Q 036903          234 RDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL--ITDKLVVLNLPC  311 (323)
Q Consensus       234 ~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i--~L~~L~~L~l~~  311 (323)
                      +.-.++...|+++++|+.|||..|.+       ..... -.+..|+ .|+.|.|..|+|..|-+..  ++.++++|+|..
T Consensus       208 rittLp~r~Fk~L~~L~~LdLnrN~i-------rive~-ltFqgL~-Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~  278 (873)
T KOG4194|consen  208 RITTLPQRSFKRLPKLESLDLNRNRI-------RIVEG-LTFQGLP-SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET  278 (873)
T ss_pred             cccccCHHHhhhcchhhhhhccccce-------eeehh-hhhcCch-hhhhhhhhhcCcccccCcceeeecccceeeccc
Confidence            33344555566666666666665554       11111 2345555 6666666666666666654  366666666666


Q ss_pred             Cccccccc
Q 036903          312 SNVELLWE  319 (323)
Q Consensus       312 ~~i~~lP~  319 (323)
                      |++..+-+
T Consensus       279 N~l~~vn~  286 (873)
T KOG4194|consen  279 NRLQAVNE  286 (873)
T ss_pred             chhhhhhc
Confidence            66655543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.58  E-value=0.0074  Score=32.62  Aligned_cols=20  Identities=20%  Similarity=0.117  Sum_probs=13.6

Q ss_pred             CCCceEEEcCCCcccccccc
Q 036903          301 TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       301 L~~L~~L~l~~~~i~~lP~~  320 (323)
                      |.+|++|+|.+|.|+.+|.+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            45667777777777777765

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.58  E-value=0.0074  Score=32.62  Aligned_cols=20  Identities=20%  Similarity=0.117  Sum_probs=13.6

Q ss_pred             CCCceEEEcCCCcccccccc
Q 036903          301 TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       301 L~~L~~L~l~~~~i~~lP~~  320 (323)
                      |.+|++|+|.+|.|+.+|.+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            45667777777777777765

>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.34  E-value=0.013  Score=29.41  Aligned_cols=20  Identities=55%  Similarity=0.880  Sum_probs=18.5

Q ss_pred             CceEEEcCCCcccccccccC
Q 036903          303 KLVVLNLPCSNVELLWEEKK  322 (323)
Q Consensus       303 ~L~~L~l~~~~i~~lP~~i~  322 (323)
                      +|..|+++++++++||+|+|
T Consensus         1 ~LVeL~m~~S~lekLW~G~k   20 (20)
T PF07725_consen    1 NLVELNMPYSKLEKLWEGVK   20 (20)
T ss_pred             CcEEEECCCCChHHhcCccC
Confidence            58899999999999999987

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.19  E-value=0.0086  Score=56.40  Aligned_cols=66  Identities=18%  Similarity=0.136  Sum_probs=40.7

Q ss_pred             hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCceEEEcCCCcccccc
Q 036903          243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~lP  318 (323)
                      +..+++|..|++.++.+         .++...+..++ +|++|++++|.|+.+...-.|..|+.|++.+|.|..++
T Consensus        91 l~~~~~l~~l~l~~n~i---------~~i~~~l~~~~-~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~  156 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKI---------EKIENLLSSLV-NLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS  156 (414)
T ss_pred             cccccceeeeeccccch---------hhcccchhhhh-cchheeccccccccccchhhccchhhheeccCcchhcc
Confidence            45566666666666665         44443355666 66677777666666665544666666676666665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=95.18  E-value=0.0022  Score=49.95  Aligned_cols=69  Identities=13%  Similarity=0.051  Sum_probs=57.5

Q ss_pred             hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccccc
Q 036903          243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      +.+...|...+|++|.+         .++|+.+...+..+..|+|++|.|..+|..+. +..|+.|+++.|.+...|+-
T Consensus        49 l~~~~el~~i~ls~N~f---------k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~v  118 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNGF---------KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRV  118 (177)
T ss_pred             HhCCceEEEEecccchh---------hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHH
Confidence            35566788899999987         77888765443378899999999999999997 99999999999999888863

>PRK15386 type III secretion protein GogB; Provisional

Probab=95.02  E-value=0.044  Score=50.97  Aligned_cols=12  Identities=17%  Similarity=0.013  Sum_probs=9.2

Q ss_pred             CCceEEEEeCCC
Q 036903          247 TNLRLLKFYLPN  258 (323)
Q Consensus       247 ~~LrvL~L~~~~  258 (323)
                      .+|+.|++.+|.
T Consensus        94 ~nLe~L~Ls~Cs  105 (426)
T PRK15386         94 EGLEKLTVCHCP  105 (426)
T ss_pred             hhhhheEccCcc
Confidence            478888888773

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=94.94  E-value=0.16  Score=50.94  Aligned_cols=175  Identities=16%  Similarity=0.195  Sum_probs=110.6

Q ss_pred             CCCCCCCceEEEEcCChhhHhhcCCC-CcceEEc----CCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCch
Q 036903            8 LDRFGPGSRIIVTTRDKRVLDNFGVP-NTNIYKV----RGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPL   82 (323)
Q Consensus         8 ~~~~~~gs~IlvTTR~~~v~~~~~~~-~~~~~~l----~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL   82 (323)
                      ++...+|-..+||||+.--...-... .+...++    =.++.+|+-++|.......-+     ..-.+.+.+..+|.+-
T Consensus       154 l~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld-----~~~~~~L~~~teGW~~  228 (894)
T COG2909         154 LKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD-----AADLKALYDRTEGWAA  228 (894)
T ss_pred             HHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC-----hHHHHHHHhhcccHHH
Confidence            34456678899999987432211100 1112222    358899999999877411111     2346789999999999


Q ss_pred             hHHHHhhhhcCC-ChHHHHHHHHHhhcCCcccHHH-HHHHHhcCCChhhHhHhhhhcccCCCCCHHHHHHHHhhcch---
Q 036903           83 ALRVLGSFLHRK-SKLDWENALENLKRSSDFEIYD-VLKISYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNY---  157 (323)
Q Consensus        83 Ai~~ig~~L~~~-~~~~w~~~l~~l~~~~~~~i~~-~l~~sy~~L~~~~k~cfl~~s~fp~~~~~~~l~~~w~~~g~---  157 (323)
                      |+..++=.+++. +.+.--..++   .. .+.+.. ...--++.||++.|..++-||+++. +. +.|......++.   
T Consensus       229 al~L~aLa~~~~~~~~q~~~~Ls---G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~-~eL~~~Ltg~~ng~a  302 (894)
T COG2909         229 ALQLIALALRNNTSAEQSLRGLS---GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FN-DELCNALTGEENGQA  302 (894)
T ss_pred             HHHHHHHHccCCCcHHHHhhhcc---ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hh-HHHHHHHhcCCcHHH
Confidence            999999888843 3222221111   11 111111 1223568999999999999999854 22 334444433333   


Q ss_pred             HHHHhhhCCcceEc---CCCeEEecHHHHHHHHHHHhhh
Q 036903          158 VLNVLVDKSLLRIS---RYNKLQMHDLLQEMGREIVRQE  193 (323)
Q Consensus       158 ~l~~L~~~~ll~~~---~~~~~~mh~lv~~~~~~~~~~~  193 (323)
                      .+++|.+++++-..   +++.|+.|.++.||.+.....+
T Consensus       303 mLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~  341 (894)
T COG2909         303 MLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE  341 (894)
T ss_pred             HHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence            79999999998632   3668999999999998877654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=94.66  E-value=0.011  Score=53.24  Aligned_cols=90  Identities=20%  Similarity=0.210  Sum_probs=61.3

Q ss_pred             ceeEEEEeecCCccc--cccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC-----
Q 036903          221 DVIAGIFLDLSKIRD--IHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR-----  293 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~--l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~-----  293 (323)
                      ..++.+.+..+.+..  .......+..+..|+.|++++|.+...    ....++..+..++ +|++|++++|.+.     
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~~  211 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA----GIRALAEGLKANC-NLEVLDLNNNGLTDEGAS  211 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH----HHHHHHHHHHhCC-CCCEEeccCCccChHHHH
Confidence            466777666555431  122344577888999999999887210    0013445566667 9999999999875     


Q ss_pred             CCCCCCC-CCCceEEEcCCCccc
Q 036903          294 TLPTNLI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       294 ~LP~~i~-L~~L~~L~l~~~~i~  315 (323)
                      .++..+. +++|++|++++|.+.
T Consensus       212 ~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         212 ALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHhcccCCCCEEecCCCcCc
Confidence            3445565 889999999999776

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=94.52  E-value=0.0063  Score=55.99  Aligned_cols=88  Identities=17%  Similarity=0.135  Sum_probs=56.1

Q ss_pred             cceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC
Q 036903          220 TDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL  299 (323)
Q Consensus       220 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i  299 (323)
                      .++++.++++-......... .....+.++|.|||+.|-+.      .-..+.+.++.|| +|+.|+|+.|.+..--++.
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~------nw~~v~~i~eqLp-~Le~LNls~Nrl~~~~~s~  191 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFH------NWFPVLKIAEQLP-SLENLNLSSNRLSNFISSN  191 (505)
T ss_pred             HHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHH------hHHHHHHHHHhcc-cchhcccccccccCCcccc
Confidence            33556666554433221111 35577888888888887541      1134455677888 8888888888665443332


Q ss_pred             --C-CCCceEEEcCCCccc
Q 036903          300 --I-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       300 --~-L~~L~~L~l~~~~i~  315 (323)
                        . +.+|++|.|++|.+.
T Consensus       192 ~~~~l~~lK~L~l~~CGls  210 (505)
T KOG3207|consen  192 TTLLLSHLKQLVLNSCGLS  210 (505)
T ss_pred             chhhhhhhheEEeccCCCC
Confidence              3 788888888888776

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.50  E-value=0.041  Score=45.77  Aligned_cols=67  Identities=21%  Similarity=0.164  Sum_probs=38.8

Q ss_pred             hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC---CCCCceEEEcCCCcccc
Q 036903          241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL---ITDKLVVLNLPCSNVEL  316 (323)
Q Consensus       241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i---~L~~L~~L~l~~~~i~~  316 (323)
                      +.|..+++|..|.|.+|.+         +.+...+..+..+|..|.|.+|+|.+|-+--   .++.|++|.+=+|.+++
T Consensus        58 ~~lp~l~rL~tLll~nNrI---------t~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~  127 (233)
T KOG1644|consen   58 DNLPHLPRLHTLLLNNNRI---------TRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH  127 (233)
T ss_pred             ccCCCccccceEEecCCcc---------eeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhc
Confidence            3456667777777777765         4444444443326777777776665553322   36666666666655443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=93.93  E-value=0.031  Score=51.65  Aligned_cols=66  Identities=21%  Similarity=0.236  Sum_probs=34.2

Q ss_pred             hhCCCCceEEEEeCCCCCCCCCCCcccccC--CCccCcCCCceeEEecCCCCCCC--CCC-----CC-CCCceEEEcCCC
Q 036903          243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLD--QGLDYLPEELTYLHWHGYPLRTL--PTN-----LI-TDKLVVLNLPCS  312 (323)
Q Consensus       243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp--~~i~~L~~~Lr~L~l~~~~i~~L--P~~-----i~-L~~L~~L~l~~~  312 (323)
                      ..-++.|+.|||++|.+         ..++  ..++.|+ .|+.|+++.|.+.++  |+.     .. +.+|+.|++..|
T Consensus       242 ~~i~~~L~~LdLs~N~l---------i~~~~~~~~~~l~-~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N  311 (505)
T KOG3207|consen  242 TKILQTLQELDLSNNNL---------IDFDQGYKVGTLP-GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN  311 (505)
T ss_pred             hhhhhHHhhccccCCcc---------ccccccccccccc-chhhhhccccCcchhcCCCccchhhhcccccceeeecccC
Confidence            34445556666666554         2222  3455566 666666666555533  333     12 556666666666


Q ss_pred             cccccc
Q 036903          313 NVELLW  318 (323)
Q Consensus       313 ~i~~lP  318 (323)
                      +|.+.|
T Consensus       312 ~I~~w~  317 (505)
T KOG3207|consen  312 NIRDWR  317 (505)
T ss_pred             cccccc
Confidence            554433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=93.72  E-value=0.01  Score=58.14  Aligned_cols=33  Identities=24%  Similarity=0.168  Sum_probs=15.6

Q ss_pred             CceeEEecCCCCCCCCCCCCCCCceEEEcCCCc
Q 036903          281 ELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSN  313 (323)
Q Consensus       281 ~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~  313 (323)
                      +|..|.+++|.+++|-.--+|++|+.||++.|-
T Consensus       233 ~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNl  265 (1096)
T KOG1859|consen  233 KLQLLNLRNNALTTLRGIENLKSLYGLDLSYNL  265 (1096)
T ss_pred             hheeeeecccHHHhhhhHHhhhhhhccchhHhh
Confidence            344555555544444333235555555555443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.59  E-value=0.042  Score=29.55  Aligned_cols=21  Identities=33%  Similarity=0.510  Sum_probs=17.5

Q ss_pred             cCCCceeEEecCCCCCCCCCCC
Q 036903          278 LPEELTYLHWHGYPLRTLPTNL  299 (323)
Q Consensus       278 L~~~Lr~L~l~~~~i~~LP~~i  299 (323)
                      |+ +|++|+|++|.++.+|..+
T Consensus         1 L~-~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LP-NLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CC-CCCEEECCCCcCCcCCHHH
Confidence            45 8899999999999998763

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.59  E-value=0.042  Score=29.55  Aligned_cols=21  Identities=33%  Similarity=0.510  Sum_probs=17.5

Q ss_pred             cCCCceeEEecCCCCCCCCCCC
Q 036903          278 LPEELTYLHWHGYPLRTLPTNL  299 (323)
Q Consensus       278 L~~~Lr~L~l~~~~i~~LP~~i  299 (323)
                      |+ +|++|+|++|.++.+|..+
T Consensus         1 L~-~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LP-NLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CC-CCCEEECCCCcCCcCCHHH
Confidence            45 8899999999999998763

>COG3903 Predicted ATPase [General function prediction only]

Probab=93.27  E-value=0.14  Score=47.09  Aligned_cols=174  Identities=23%  Similarity=0.253  Sum_probs=120.5

Q ss_pred             CCceEEEEcCChhhHhhcCCCCcceEEcCCCCHH-hHHHHHHHhhhcCCC---CCCChHHHHHHHHHHhcCCchhHHHHh
Q 036903           13 PGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYS-EALELFCNFAFKQSN---CPDGLFTLSKHIVGYCKGNPLALRVLG   88 (323)
Q Consensus        13 ~gs~IlvTTR~~~v~~~~~~~~~~~~~l~~L~~~-~~~~Lf~~~~~~~~~---~~~~~~~~~~~i~~~c~GlPLAi~~ig   88 (323)
                      +.-.|+.|+|.....     .....+.+.+|+.. ++.++|...+.....   ....-...+..|.++..|.|+||...+
T Consensus       116 ~~~~~~atsre~~l~-----~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaa  190 (414)
T COG3903         116 PRLAILATSREAILV-----AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAA  190 (414)
T ss_pred             hhhhhHHHhHhhhcc-----cccccccCCccccCCchhHHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHH
Confidence            334577788776332     24567788888877 688898877643211   122234668889999999999999999


Q ss_pred             hhhcCCChHHHHHHHHH----hhcC------CcccHHHHHHHHhcCCChhhHhHhhhhcccCCCCCHHHHHHHHhhcch-
Q 036903           89 SFLHRKSKLDWENALEN----LKRS------SDFEIYDVLKISYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNY-  157 (323)
Q Consensus        89 ~~L~~~~~~~w~~~l~~----l~~~------~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~~~~l~~~w~~~g~-  157 (323)
                      +..+.-...+-..-+..    ++..      ......+.+.+||.-|..-.+--|--++.|...|+-+.  ..|.+.|- 
T Consensus       191 arv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~rLa~~~g~f~~~l--~~~~a~g~~  268 (414)
T COG3903         191 ARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFGRLAVFVGGFDLGL--ALAVAAGAD  268 (414)
T ss_pred             HHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhcchhhhhhhhcccH--HHHHhcCCc
Confidence            99988754444333322    2222      24567889999999999999999999999988887763  23332222 


Q ss_pred             ----------HHHHhhhCCcceEcC---CCeEEecHHHHHHHHHHHhhh
Q 036903          158 ----------VLNVLVDKSLLRISR---YNKLQMHDLLQEMGREIVRQE  193 (323)
Q Consensus       158 ----------~l~~L~~~~ll~~~~---~~~~~mh~lv~~~~~~~~~~~  193 (323)
                                .+..+++.+++...+   ...|+.-+-++.|+..+..+.
T Consensus       269 ~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~  317 (414)
T COG3903         269 VDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS  317 (414)
T ss_pred             cccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence                      566778888876553   335888888888888776554

>PRK06893 DNA replication initiation factor; Validated

Probab=91.82  E-value=1.1  Score=38.61  Aligned_cols=73  Identities=10%  Similarity=0.125  Sum_probs=49.2

Q ss_pred             CCceEEEEcCC----------hhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCch
Q 036903           13 PGSRIIVTTRD----------KRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPL   82 (323)
Q Consensus        13 ~gs~IlvTTR~----------~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL   82 (323)
                      .|+.+||||.+          +++..++.  ....++++++++++.++++++.+....-.-+  +++..-|++.+.|-.-
T Consensus       123 ~~~~illits~~~p~~l~~~~~~L~sRl~--~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~--~~v~~~L~~~~~~d~r  198 (229)
T PRK06893        123 QGKTLLLISADCSPHALSIKLPDLASRLT--WGEIYQLNDLTDEQKIIVLQRNAYQRGIELS--DEVANFLLKRLDRDMH  198 (229)
T ss_pred             cCCcEEEEeCCCChHHccccchhHHHHHh--cCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhccCCHH
Confidence            35666554443          46666665  5678999999999999999999865432111  3556778888887665


Q ss_pred             hHHHHhh
Q 036903           83 ALRVLGS   89 (323)
Q Consensus        83 Ai~~ig~   89 (323)
                      ++..+=.
T Consensus       199 ~l~~~l~  205 (229)
T PRK06893        199 TLFDALD  205 (229)
T ss_pred             HHHHHHH
Confidence            5544433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.85  E-value=0.1  Score=46.06  Aligned_cols=69  Identities=19%  Similarity=0.167  Sum_probs=41.6

Q ss_pred             chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC--CCCCCCC-CCCceEEEcCCCcccc
Q 036903          240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR--TLPTNLI-TDKLVVLNLPCSNVEL  316 (323)
Q Consensus       240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~--~LP~~i~-L~~L~~L~l~~~~i~~  316 (323)
                      ...+.+|+.|++|.++.|.+..     .+..+|   -.+. +||.|-|.|+.+.  .+-.+.. |+.++.|.++.|+++.
T Consensus        90 ~~ile~lP~l~~LNls~N~L~s-----~I~~lp---~p~~-nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq  160 (418)
T KOG2982|consen   90 GAILEQLPALTTLNLSCNSLSS-----DIKSLP---LPLK-NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ  160 (418)
T ss_pred             HHHHhcCccceEeeccCCcCCC-----ccccCc---cccc-ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh
Confidence            3456788888888887776521     112233   2344 7888888777443  3334445 7777777777776554


Q ss_pred             c
Q 036903          317 L  317 (323)
Q Consensus       317 l  317 (323)
                      +
T Consensus       161 ~  161 (418)
T KOG2982|consen  161 L  161 (418)
T ss_pred             h
Confidence            3

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=90.25  E-value=0.049  Score=48.93  Aligned_cols=89  Identities=21%  Similarity=0.234  Sum_probs=59.2

Q ss_pred             eeEEEEeecCCcc--ccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC----
Q 036903          222 VIAGIFLDLSKIR--DIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL----  295 (323)
Q Consensus       222 ~~~~l~~~~~~~~--~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L----  295 (323)
                      .++.+.+..+.++  ........|..+++|+||||..|.+..+    ....+.+.+..++ +||.|++++|.++.=    
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~e----gs~~LakaL~s~~-~L~El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLE----GSVALAKALSSWP-HLRELNLGDCLLENEGAIA  260 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhH----HHHHHHHHhcccc-hheeecccccccccccHHH
Confidence            4444444444433  2334556788999999999999876311    0124566777888 999999999876532    


Q ss_pred             -CCCC-C-CCCceEEEcCCCccc
Q 036903          296 -PTNL-I-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       296 -P~~i-~-L~~L~~L~l~~~~i~  315 (323)
                       -..+ . .++|++|++.+|.|+
T Consensus       261 ~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  261 FVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             HHHHHhccCCCCceeccCcchhH
Confidence             2223 2 678899999888765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=90.18  E-value=0.059  Score=53.08  Aligned_cols=71  Identities=25%  Similarity=0.284  Sum_probs=51.8

Q ss_pred             cccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcc
Q 036903          236 IHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNV  314 (323)
Q Consensus       236 l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i  314 (323)
                      +...+.++.=++.|+.|+|+.|.+         .+.. .+..++ +|+.|||+.|.+..+|.--. =.+|+.|++++|.+
T Consensus       176 L~~mD~SLqll~ale~LnLshNk~---------~~v~-~Lr~l~-~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l  244 (1096)
T KOG1859|consen  176 LVLMDESLQLLPALESLNLSHNKF---------TKVD-NLRRLP-KLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNAL  244 (1096)
T ss_pred             HHhHHHHHHHHHHhhhhccchhhh---------hhhH-HHHhcc-cccccccccchhccccccchhhhhheeeeecccHH
Confidence            344456666677888888888876         3433 677777 88888888888888887653 34488888888877


Q ss_pred             ccc
Q 036903          315 ELL  317 (323)
Q Consensus       315 ~~l  317 (323)
                      ++|
T Consensus       245 ~tL  247 (1096)
T KOG1859|consen  245 TTL  247 (1096)
T ss_pred             Hhh
Confidence            765

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=90.15  E-value=0.18  Score=27.18  Aligned_cols=17  Identities=29%  Similarity=0.247  Sum_probs=12.4

Q ss_pred             CceEEEcCCCccccccc
Q 036903          303 KLVVLNLPCSNVELLWE  319 (323)
Q Consensus       303 ~L~~L~l~~~~i~~lP~  319 (323)
                      +|+.|++++|++++||+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            56777777777777776

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=90.02  E-value=0.39  Score=40.13  Aligned_cols=84  Identities=19%  Similarity=0.195  Sum_probs=58.5

Q ss_pred             ccceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC
Q 036903          219 GTDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN  298 (323)
Q Consensus       219 ~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~  298 (323)
                      ..+.+.++.+..+  +-..+.+..-.-+++|.+|.|.+|++.      ....+ ..+-.+| .|+||.+-+|.+++.+.-
T Consensus        62 ~l~rL~tLll~nN--rIt~I~p~L~~~~p~l~~L~LtnNsi~------~l~dl-~pLa~~p-~L~~Ltll~Npv~~k~~Y  131 (233)
T KOG1644|consen   62 HLPRLHTLLLNNN--RITRIDPDLDTFLPNLKTLILTNNSIQ------ELGDL-DPLASCP-KLEYLTLLGNPVEHKKNY  131 (233)
T ss_pred             CccccceEEecCC--cceeeccchhhhccccceEEecCcchh------hhhhc-chhccCC-ccceeeecCCchhcccCc
Confidence            4445566655544  345566666667788999999999872      11222 3455677 899999999988888774


Q ss_pred             ----CC-CCCceEEEcCCC
Q 036903          299 ----LI-TDKLVVLNLPCS  312 (323)
Q Consensus       299 ----i~-L~~L~~L~l~~~  312 (323)
                          +. +++|++||++.-
T Consensus       132 R~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  132 RLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eeEEEEecCcceEeehhhh
Confidence                35 899999998764

>COG3899 Predicted ATPase [General function prediction only]

Probab=88.92  E-value=3.5  Score=42.67  Aligned_cols=154  Identities=16%  Similarity=0.187  Sum_probs=106.1

Q ss_pred             CcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHhhhhcCC-------ChHHHHHHHHHh
Q 036903           34 NTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRK-------SKLDWENALENL  106 (323)
Q Consensus        34 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig~~L~~~-------~~~~w~~~l~~l  106 (323)
                      ....+.+.||+..+...+...........+   .+....|+++-.|.|+=+.-+-..+...       +...|+-=..++
T Consensus       210 ~i~~I~L~PL~~~d~~~lV~~~l~~~~~~~---~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i  286 (849)
T COG3899         210 NITTITLAPLSRADTNQLVAATLGCTKLLP---APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL  286 (849)
T ss_pred             ceeEEecCcCchhhHHHHHHHHhCCccccc---chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc
Confidence            456899999999999999988874433333   3558899999999999998888777642       444555333333


Q ss_pred             hcCC-cccHHHHHHHHhcCCChhhHhHhhhhcccCCCCCHHHHHHHHhhcch----HHHHhhhCCcceEcC--------C
Q 036903          107 KRSS-DFEIYDVLKISYNELNPEEKSLFLDIACFFAGEDKNLVTKILDDSNY----VLNVLVDKSLLRISR--------Y  173 (323)
Q Consensus       107 ~~~~-~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~~~~l~~~w~~~g~----~l~~L~~~~ll~~~~--------~  173 (323)
                      .... .+++...+..-.+.||+..|..+-..|++...|+.+.|...+.....    .+.+....+++.+.+        .
T Consensus       287 ~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~  366 (849)
T COG3899         287 GILATTDAVVEFLAARLQKLPGTTREVLKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNV  366 (849)
T ss_pred             CCchhhHHHHHHHHHHHhcCCHHHHHHHHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceecccccccccccc
Confidence            3221 23356678899999999999999999999999999888888765444    333333444444321        1


Q ss_pred             CeE---EecHHHHHHHHHHH
Q 036903          174 NKL---QMHDLLQEMGREIV  190 (323)
Q Consensus       174 ~~~---~mh~lv~~~~~~~~  190 (323)
                      ...   -.|+.+++.+-...
T Consensus       367 ~~~~Y~F~H~~vqqaaY~~i  386 (849)
T COG3899         367 DIATYKFLHDRVQQAAYNLI  386 (849)
T ss_pred             chhhHHhhHHHHHHHHhccC
Confidence            112   46777877775543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=88.83  E-value=0.29  Score=42.34  Aligned_cols=62  Identities=23%  Similarity=0.252  Sum_probs=43.1

Q ss_pred             hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCC--CCC-CCCCCCC-CCCceEEEcCCCcccc
Q 036903          244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGY--PLR-TLPTNLI-TDKLVVLNLPCSNVEL  316 (323)
Q Consensus       244 ~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~--~i~-~LP~~i~-L~~L~~L~l~~~~i~~  316 (323)
                      ..+..|..|++.++.+         +.+ ..+-.|+ +|++|.++.|  .+. .++.... +.+|++|++++|+|+-
T Consensus        40 d~~~~le~ls~~n~gl---------tt~-~~~P~Lp-~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~  105 (260)
T KOG2739|consen   40 DEFVELELLSVINVGL---------TTL-TNFPKLP-KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD  105 (260)
T ss_pred             ccccchhhhhhhccce---------eec-ccCCCcc-hhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc
Confidence            3445556666666654         222 2344678 9999999988  443 6666665 8999999999998764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.41  E-value=0.36  Score=42.81  Aligned_cols=62  Identities=26%  Similarity=0.287  Sum_probs=31.4

Q ss_pred             hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCC----CCCCCCCCCCCceEEEcCCCcc
Q 036903          244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPL----RTLPTNLITDKLVVLNLPCSNV  314 (323)
Q Consensus       244 ~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i----~~LP~~i~L~~L~~L~l~~~~i  314 (323)
                      +....++-|||.+|.+.      .=..+-..+++|| +|+.|+|+.|.+    .++|  ..+.+|++|-|.++.+
T Consensus        68 ~~~~~v~elDL~~N~iS------dWseI~~ile~lP-~l~~LNls~N~L~s~I~~lp--~p~~nl~~lVLNgT~L  133 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLIS------DWSEIGAILEQLP-ALTTLNLSCNSLSSDIKSLP--LPLKNLRVLVLNGTGL  133 (418)
T ss_pred             HHhhhhhhhhcccchhc------cHHHHHHHHhcCc-cceEeeccCCcCCCccccCc--ccccceEEEEEcCCCC
Confidence            34455666666666541      0011222345566 666666665532    3333  2355666666666543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.36  E-value=0.013  Score=49.83  Aligned_cols=65  Identities=12%  Similarity=-0.022  Sum_probs=52.4

Q ss_pred             hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccc
Q 036903          241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~  315 (323)
                      ..|+.+..|.-||++.+.+         ..+|+..+.+. .++.+++..|+.+.+|.+++ +++++.+++.+|.+.
T Consensus        59 ~n~s~~t~~~rl~~sknq~---------~~~~~d~~q~~-e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen   59 KNFSILTRLVRLDLSKNQI---------KFLPKDAKQQR-ETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             cchHHHHHHHHHhccHhhH---------hhChhhHHHHH-HHHHHHhhccchhhCCccccccCCcchhhhccCcch
Confidence            4456666667777776665         67888998888 89999998889999999998 999999999888654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.19  E-value=0.014  Score=49.61  Aligned_cols=72  Identities=15%  Similarity=0.166  Sum_probs=62.1

Q ss_pred             chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccc
Q 036903          240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP  318 (323)
                      -..+..++..++||++.+..         ..+-..+..+. .|..|+++.+.+..+|.+++ +..+..+++.+|+.+.+|
T Consensus        35 v~ei~~~kr~tvld~~s~r~---------vn~~~n~s~~t-~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p  104 (326)
T KOG0473|consen   35 VREIASFKRVTVLDLSSNRL---------VNLGKNFSILT-RLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQP  104 (326)
T ss_pred             hhhhhccceeeeehhhhhHH---------HhhccchHHHH-HHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCC
Confidence            34457788999999999876         56667777788 88899999999999999998 999999999999999999


Q ss_pred             ccc
Q 036903          319 EEK  321 (323)
Q Consensus       319 ~~i  321 (323)
                      .+-
T Consensus       105 ~s~  107 (326)
T KOG0473|consen  105 KSQ  107 (326)
T ss_pred             ccc
Confidence            864

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=87.57  E-value=0.32  Score=43.81  Aligned_cols=93  Identities=16%  Similarity=0.163  Sum_probs=64.1

Q ss_pred             cccceeEEEEeecCCcc--ccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC
Q 036903          218 KGTDVIAGIFLDLSKIR--DIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL  295 (323)
Q Consensus       218 ~~~~~~~~l~~~~~~~~--~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L  295 (323)
                      ....+++.+.+..+...  .-......|...+.|+.+.++.|.+.....    +-+-..+...+ +|+.|||+.|.++.-
T Consensus       154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~----~al~eal~~~~-~LevLdl~DNtft~e  228 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV----TALAEALEHCP-HLEVLDLRDNTFTLE  228 (382)
T ss_pred             CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh----HHHHHHHHhCC-cceeeecccchhhhH
Confidence            34557777766655432  122334567888999999999998731110    23445677888 999999999977533


Q ss_pred             -----CCCCC-CCCceEEEcCCCccc
Q 036903          296 -----PTNLI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       296 -----P~~i~-L~~L~~L~l~~~~i~  315 (323)
                           -..++ +++|+.|++.+|.++
T Consensus       229 gs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  229 GSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             HHHHHHHHhcccchheeecccccccc
Confidence                 34456 789999999999875

>PF05729 NACHT: NACHT domain

Probab=86.33  E-value=1.6  Score=34.62  Aligned_cols=43  Identities=14%  Similarity=0.359  Sum_probs=34.4

Q ss_pred             CCCceEEEEcCChhhH---hhcCCCCcceEEcCCCCHHhHHHHHHHhh
Q 036903           12 GPGSRIIVTTRDKRVL---DNFGVPNTNIYKVRGLNYSEALELFCNFA   56 (323)
Q Consensus        12 ~~gs~IlvTTR~~~v~---~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~   56 (323)
                      .++++++||+|.....   ....  ....+.+++|++++..+++.++.
T Consensus       118 ~~~~~liit~r~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~f  163 (166)
T PF05729_consen  118 PPGVKLIITSRPRAFPDLRRRLK--QAQILELEPFSEEDIKQYLRKYF  163 (166)
T ss_pred             CCCCeEEEEEcCChHHHHHHhcC--CCcEEEECCCCHHHHHHHHHHHh
Confidence            5689999999998773   2333  44689999999999999998764

>PRK09087 hypothetical protein; Validated

Probab=84.62  E-value=14  Score=31.65  Aligned_cols=71  Identities=7%  Similarity=0.075  Sum_probs=50.2

Q ss_pred             CCceEEEEcCC---------hhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchh
Q 036903           13 PGSRIIVTTRD---------KRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLA   83 (323)
Q Consensus        13 ~gs~IlvTTR~---------~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLA   83 (323)
                      .|..||+|++.         ++...++.  ....+++++++.++-.+++.+.+-...-.-  -+++..-|++.+.|..-+
T Consensus       116 ~g~~ilits~~~p~~~~~~~~dL~SRl~--~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l--~~ev~~~La~~~~r~~~~  191 (226)
T PRK09087        116 AGTSLLMTSRLWPSSWNVKLPDLKSRLK--AATVVEIGEPDDALLSQVIFKLFADRQLYV--DPHVVYYLVSRMERSLFA  191 (226)
T ss_pred             CCCeEEEECCCChHHhccccccHHHHHh--CCceeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhhhhHHH
Confidence            46789999873         44455555  667999999999999999999884422111  135677788888887766


Q ss_pred             HHHH
Q 036903           84 LRVL   87 (323)
Q Consensus        84 i~~i   87 (323)
                      +..+
T Consensus       192 l~~~  195 (226)
T PRK09087        192 AQTI  195 (226)
T ss_pred             HHHH
Confidence            6643

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=84.42  E-value=5.2  Score=33.64  Aligned_cols=51  Identities=18%  Similarity=0.055  Sum_probs=30.8

Q ss_pred             cceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHH
Q 036903           35 TNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRV   86 (323)
Q Consensus        35 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~   86 (323)
                      ...+.+++|+.+++++++....-..... +.-.+..++|...+||.|..|..
T Consensus       183 ~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~  233 (234)
T PF01637_consen  183 FSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQE  233 (234)
T ss_dssp             --EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred             cceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence            3459999999999999999976333111 11235568899999999987754

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=83.80  E-value=0.83  Score=24.65  Aligned_cols=17  Identities=18%  Similarity=0.288  Sum_probs=12.0

Q ss_pred             CCCceEEEcCCCccccc
Q 036903          301 TDKLVVLNLPCSNVELL  317 (323)
Q Consensus       301 L~~L~~L~l~~~~i~~l  317 (323)
                      |.+|+.|++.+|+|+.+
T Consensus         1 L~~L~~L~L~~NkI~~I   17 (26)
T smart00365        1 LTNLEELDLSQNKIKKI   17 (26)
T ss_pred             CCccCEEECCCCcccee
Confidence            46777888888776554

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=83.13  E-value=7.9  Score=33.75  Aligned_cols=57  Identities=14%  Similarity=0.031  Sum_probs=43.5

Q ss_pred             cceEEcCCCCHHhHHHHHHHhhhcCC-CCC-CChHHHHHHHHHHhcCCchhHHHHhhhh
Q 036903           35 TNIYKVRGLNYSEALELFCNFAFKQS-NCP-DGLFTLSKHIVGYCKGNPLALRVLGSFL   91 (323)
Q Consensus        35 ~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~-~~~~~~~~~i~~~c~GlPLAi~~ig~~L   91 (323)
                      ...+.+++++.+|..+++...+.... ... .--.+..+.|++.++|.|..|..++..+
T Consensus       184 ~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~  242 (269)
T TIGR03015       184 IASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL  242 (269)
T ss_pred             eeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence            34678999999999999988764322 111 1224678889999999999999988876

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.36  E-value=0.88  Score=23.70  Aligned_cols=15  Identities=20%  Similarity=0.359  Sum_probs=9.3

Q ss_pred             CCCceEEEcCCCccc
Q 036903          301 TDKLVVLNLPCSNVE  315 (323)
Q Consensus       301 L~~L~~L~l~~~~i~  315 (323)
                      +++|++|+|++|.|.
T Consensus         1 ~~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    1 NPNLETLDLSNNQIT   15 (24)
T ss_dssp             -TT-SEEE-TSSBEH
T ss_pred             CCCCCEEEccCCcCC
Confidence            367888888888764

...

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=80.33  E-value=43  Score=31.07  Aligned_cols=148  Identities=14%  Similarity=0.029  Sum_probs=82.3

Q ss_pred             EEEEcCChhhHhhcC-----CCCcceEEcCCCCHHhHHHHHHHhhhcC---CC-CCCChHHHHHHHHHHhcCCchhHHHH
Q 036903           17 IIVTTRDKRVLDNFG-----VPNTNIYKVRGLNYSEALELFCNFAFKQ---SN-CPDGLFTLSKHIVGYCKGNPLALRVL   87 (323)
Q Consensus        17 IlvTTR~~~v~~~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~~~~~---~~-~~~~~~~~~~~i~~~c~GlPLAi~~i   87 (323)
                      +|.++....+.....     .-....+.++|.+.++..+++...+-..   .. .++.++.+++......|..+.|+..+
T Consensus       176 vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll  255 (394)
T PRK00411        176 VIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLL  255 (394)
T ss_pred             EEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHH
Confidence            666666554433221     0012467999999999999999876322   11 22223333343333356677777776


Q ss_pred             hhhhc-----CC---ChHHHHHHHHHhhcCCcccHHHHHHHHhcCCChhhHhHhhhhcccC----CCCCHHHHHHH----
Q 036903           88 GSFLH-----RK---SKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIACFF----AGEDKNLVTKI----  151 (323)
Q Consensus        88 g~~L~-----~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp----~~~~~~~l~~~----  151 (323)
                      -.+..     +.   +.+.+..+.+...       .....-.+..||.+.|..+..++...    ..+....+...    
T Consensus       256 ~~a~~~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l  328 (394)
T PRK00411        256 RRAGLIAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKEL  328 (394)
T ss_pred             HHHHHHHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence            54321     11   4555555555441       23345568899999887765554332    22344443322    


Q ss_pred             ---Hhhc--ch-----HHHHhhhCCcceEc
Q 036903          152 ---LDDS--NY-----VLNVLVDKSLLRIS  171 (323)
Q Consensus       152 ---w~~~--g~-----~l~~L~~~~ll~~~  171 (323)
                         ....  +.     ++++|.+.|+++..
T Consensus       329 ~~~~~~~~~~~~~~~~~l~~L~~~glI~~~  358 (394)
T PRK00411        329 CEELGYEPRTHTRFYEYINKLDMLGIINTR  358 (394)
T ss_pred             HHHcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence               1110  11     89999999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	323
1z6t_A	591	Structure Of The Apoptotic Protease-activating Fact		6e-07
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-06
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-05

>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1 Bound To Adp Length = 591

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 102/225 (45%), Gaps = 52/225 (23%)
Query: 8   LDRFGPGSRIIVTTRDKRVLDNFGVP------NTNIYKVRGLNYSEALELFCNFAFKQSN 61
           L  F    +I++TTRDK V D+   P       +++ K +GL   E L LF N   K+++
Sbjct: 251 LKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGL---EILSLFVN--MKKAD 305
Query: 62  CPDGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLK----------RSSD 111
            P+   +    I+  CKG+PL + ++G+ L R     WE  L+ L+           S D
Sbjct: 306 LPEQAHS----IIKECKGSPLVVSLIGALL-RDFPNRWEYYLKQLQNKQFKRIRKSSSYD 360
Query: 112 FEIYD-VLKISYNELNPEEKSLFLDIACFFAGEDKNLVTKIL--------DDSNYVLNVL 162
           +E  D  + IS   L  + K  + D++     +D  + TK+L        ++   +L   
Sbjct: 361 YEALDEAMSISVEMLREDIKDYYTDLSIL--QKDVKVPTKVLCILWDMETEEVEDILQEF 418
Query: 163 VDKSLLRISRYNK---LQMHDL------------LQEMGREIVRQ 192
           V+KSLL   R  K     +HDL            LQ++ ++I+ Q
Sbjct: 419 VNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQ 463

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 111/264 (42%), Gaps = 53/264 (20%)
Query: 8   LDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFA-FKQSNCPDGL 66
           L  F    +I++TTRDK V D+   P   +    GL   + LE+   F   K+ + P   
Sbjct: 251 LKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLP--- 307
Query: 67  FTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLK----------RSSDFEIYD 116
              +  I+  CKG+PL + ++G+ L R     W   L  L+           S D+E  D
Sbjct: 308 -AEAHSIIKECKGSPLVVSLIGALL-RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALD 365
Query: 117 -VLKISYNELNPEEKSLFLDIACFFAGEDKNLVTKIL--------DDSNYVLNVLVDKSL 167
             + IS   L  + K  + D++     +D  + TK+L        ++   +L   V+KSL
Sbjct: 366 EAMSISVEMLREDIKDYYTDLSIL--QKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSL 423
Query: 168 LRISRYNK---LQMHDL------------LQEMGREIVRQ-ESVKEPGKRSRLWDHED-- 209
           L  +R  K     +HDL            LQ++ R++V Q +   +P   S   D ED  
Sbjct: 424 LFCNRNGKSFCYYLHDLQVDFLTEKNRSQLQDLHRKMVTQFQRYYQPHTLSP--DQEDCM 481
Query: 210 ------VYHVLKRNKGTDVIAGIF 227
                  YH+   N   ++ A +F
Sbjct: 482 YWYNFLAYHMASANMHKELCALMF 505

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/264 (25%), Positives = 110/264 (41%), Gaps = 53/264 (20%)
Query: 8   LDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFA-FKQSNCPDGL 66
           L  F    +I++TT DK V D+   P   +    GL   + LE+   F   K+ + P   
Sbjct: 258 LKAFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLP--- 314
Query: 67  FTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLK----------RSSDFEIYD 116
              +  I+  CKG+PL + ++G+ L R     W   L  L+           S D+E  D
Sbjct: 315 -AEAHSIIKECKGSPLVVSLIGALL-RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALD 372
Query: 117 -VLKISYNELNPEEKSLFLDIACFFAGEDKNLVTKIL--------DDSNYVLNVLVDKSL 167
             + IS   L  + K  + D++     +D  + TK+L        ++   +L   V+KSL
Sbjct: 373 EAMSISVEMLREDIKDYYTDLSIL--QKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSL 430
Query: 168 LRISRYNK---LQMHDL------------LQEMGREIVRQ-ESVKEPGKRSRLWDHED-- 209
           L  +R  K     +HDL            LQ++ R++V Q +   +P   S   D ED  
Sbjct: 431 LFCNRNGKSFCYYLHDLQVDFLTEKNRSQLQDLHRKMVTQFQRYYQPHTLSP--DQEDCM 488
Query: 210 ------VYHVLKRNKGTDVIAGIF 227
                  YH+   N   ++ A +F
Sbjct: 489 YWYNFLAYHMASANMHKELCALMF 512

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	323
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-37
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	4e-32
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	2e-31
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	4e-16

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score =  141 bits (356), Expect = 2e-37
 Identities = 63/339 (18%), Positives = 116/339 (34%), Gaps = 77/339 (22%)

Query: 8   LDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKV----RGLNYSEALELFCNFAFKQSNCP 63
            + F    +I++TTR K+V D      T    +      L   E   L   +     +C 
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL----DCR 314

Query: 64  DGLFTLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKISYN 123
                L + +      NP  L ++   +      D     +N K  +  ++  +++ S N
Sbjct: 315 --PQDLPREV---LTTNPRRLSIIAESIR-----DGLATWDNWKHVNCDKLTTIIESSLN 364

Query: 124 ELNPEE-KSLFLDIACFFAGEDKNLVTKIL---------DDSNYVLNVLVDKSLL-RISR 172
            L P E + +F  ++ F      ++ T +L          D   V+N L   SL+ +  +
Sbjct: 365 VLEPAEYRKMFDRLSVF--PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 173 YNKLQMHDL----------LQEMGREIVRQESVKEPGKRSRLWD----HED-------VY 211
            + + +  +             + R IV   ++    K     D    + D        +
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIP---KTFDSDDLIPPYLDQYFYSHIGH 479

Query: 212 HVLKRNKG--TDVIAGIFLDLS----KIRDIHLGSRAFENMTN-LRLLKFYLPNRRGDPI 264
           H+          +   +FLD      KIR       A  ++ N L+ LKFY P      I
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY-----I 534

Query: 265 MSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDK 303
             +    ++ ++ +   L +L            NLI  K
Sbjct: 535 CDNDPKYERLVNAI---LDFLPKIE-------ENLICSK 563

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score =  124 bits (313), Expect = 4e-32
 Identities = 25/216 (11%), Positives = 57/216 (26%), Gaps = 31/216 (14%)

Query: 11  FGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLS 70
                R +VTTRD  + +          +V  L   E  +    +        +    + 
Sbjct: 262 QELRLRCLVTTRDVEISNAAS-QTCEFIEVTSLEIDECYDFLEAYGMP-MPVGEKEEDVL 319

Query: 71  KHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFE-----------IYDVLK 119
              +    GNP  L +       K+          L+                 +   L+
Sbjct: 320 NKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQ 379

Query: 120 ISYNELNPEEKSLFLDIACF---------------FAGEDKNLVTKILDDSNYVLNVLVD 164
                L+ E++S                             N   ++ D+    L  L  
Sbjct: 380 RCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSK 439

Query: 165 KSLLRISRYNKL---QMHDLLQEMGREIVRQESVKE 197
           +  L   +   +   ++  ++    + +V  +++  
Sbjct: 440 RGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTIAN 475

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score =  122 bits (308), Expect = 2e-31
 Identities = 48/211 (22%), Positives = 90/211 (42%), Gaps = 30/211 (14%)

Query: 8   LDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLF 67
           L  F    +I++TTRDK V D+   P   +     L   + LE+   F          L 
Sbjct: 251 LKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNM---KKADLP 307

Query: 68  TLSKHIVGYCKGNPLALRVLGSFLHRKSKL--DWENALEN-----LKRSSDFE---IYDV 117
             +  I+  CKG+PL + ++G+ L         +   L+N     +++SS ++   + + 
Sbjct: 308 EQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEA 367

Query: 118 LKISYNELNPEEKSLFLDIACFFAGEDKNLVTKIL--------DDSNYVLNVLVDKSLLR 169
           + IS   L  + K  + D++     +D  + TK+L        ++   +L   V+KSLL 
Sbjct: 368 MSISVEMLREDIKDYYTDLSIL--QKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLF 425

Query: 170 ISRYNKL---QMHDLLQEMGREIVRQESVKE 197
             R  K     +HDL      + + +++  +
Sbjct: 426 CDRNGKSFRYYLHDLQ----VDFLTEKNCSQ 452

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 78.3 bits (193), Expect = 4e-16
 Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 28/208 (13%)

Query: 8   LDRFGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLF 67
           L  F    +I++TTRDK V D+   P   +    GL   + LE+   F   +    + L 
Sbjct: 251 LKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLP 307

Query: 68  TLSKHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKR----------SSDFE-IYD 116
             +  I+  CKG+PL + ++G+ L R     W   L  L+           S D+E + +
Sbjct: 308 AEAHSIIKECKGSPLVVSLIGALL-RDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDE 366

Query: 117 VLKISYNELNPEEKSLFLDIACFFAGEDKNLVTKILD--------DSNYVLNVLVDKSLL 168
            + IS   L  + K  + D++     +D  + TK+L         +   +L   V+KSLL
Sbjct: 367 AMSISVEMLREDIKDYYTDLSIL--QKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLL 424

Query: 169 RISRYNK---LQMHDLLQEMGREIVRQE 193
             +R  K     +HDL  +   E  R +
Sbjct: 425 FCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	323
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.96
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.93
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.88
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.88
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.69
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.64
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.63
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.63
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.63
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.59
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.59
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.58
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.55
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.54
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.53
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.51
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.51
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.5
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.5
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.5
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.49
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.49
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.48
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.48
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.46
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.45
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.44
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.42
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.42
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.41
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.41
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.4
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.37
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.37
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.37
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.36
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.36
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.35
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.34
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.33
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.31
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.31
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.31
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.3
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.29
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.29
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.29
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.28
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.28
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.27
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.27
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.26
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.23
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.22
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.15
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.11
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.1
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.1
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.1
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.03
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.02
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.02
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.02
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.0
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.0
2fna_A	357	Conserved hypothetical protein; structural genomic	98.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.99
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.99
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.98
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	97.98
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.98
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.98
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.96
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.96
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.95
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	97.91
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.9
1o6v_A	466	Internalin A; bacterial infection, extracellular r	97.87
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.85
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	97.84
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.84
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.77
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.75
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.68
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.6
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.6
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.53
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.45
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.39
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.29
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	97.03
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.01
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.99
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	96.73
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.48
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	96.36
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	96.35
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	96.26
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	95.83
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.73
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	95.7
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.57
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	95.33
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	95.23
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	94.97
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	94.95
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	94.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	94.76
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	94.32
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	93.71
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	93.61
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	93.59
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	93.41
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	93.32
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	92.84
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	92.68
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	89.76
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	88.26
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	88.06
2chg_A	226	Replication factor C small subunit; DNA-binding pr	87.91
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	87.27
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	86.27

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.96  E-value=1.3e-30  Score=251.61  Aligned_cols=178  Identities=15%  Similarity=0.175  Sum_probs=147.8

Q ss_pred             CCceEEEEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHhhhhc
Q 036903           13 PGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFLH   92 (323)
Q Consensus        13 ~gs~IlvTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig~~L~   92 (323)
                      +||+||||||++.++..++ ....+|.|++|+.++||+||.+.+|+... ++++++++.+|+++|+|+||||+++|++|+
T Consensus       264 ~gs~ilvTTR~~~v~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~  341 (549)
T 2a5y_B          264 LRLRCLVTTRDVEISNAAS-QTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCE  341 (549)
T ss_dssp             TTCEEEEEESBGGGGGGCC-SCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred             CCCEEEEEcCCHHHHHHcC-CCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhc
Confidence            7999999999999998775 13468999999999999999999976543 467888999999999999999999999998


Q ss_pred             CCChHHHHHHHHH-hhcCCcccHHHHHHHHhcCCChhhHhHhh-----------hhcccCCCCCHHHHHHHHhhc--ch-
Q 036903           93 RKSKLDWENALEN-LKRSSDFEIYDVLKISYNELNPEEKSLFL-----------DIACFFAGEDKNLVTKILDDS--NY-  157 (323)
Q Consensus        93 ~~~~~~w~~~l~~-l~~~~~~~i~~~l~~sy~~L~~~~k~cfl-----------~~s~fp~~~~~~~l~~~w~~~--g~-  157 (323)
                      .++ ++|...+.. ++.....++..++.+||++||++.|.||+           |||+||+++.++  +++|+++  |+ 
T Consensus       342 ~~~-w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i  418 (549)
T 2a5y_B          342 PKT-FEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDI  418 (549)
T ss_dssp             SSS-HHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC--
T ss_pred             cch-HHHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeecccee
Confidence            773 334333332 33324567888999999999999999999           999999998888  8899998  55 


Q ss_pred             --------------HHHHhhhCCcceEcC---CCeEEecHHHHHHHHHHHhhhcc
Q 036903          158 --------------VLNVLVDKSLLRISR---YNKLQMHDLLQEMGREIVRQESV  195 (323)
Q Consensus       158 --------------~l~~L~~~~ll~~~~---~~~~~mh~lv~~~~~~~~~~~~~  195 (323)
                                    +|++|+++||++...   ..+|+|||+||+||++++.+++.
T Consensus       419 ~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          419 CSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             -----CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             ccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence                          799999999999864   34799999999999998877653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.93  E-value=1.6e-25  Score=234.29  Aligned_cols=178  Identities=25%  Similarity=0.373  Sum_probs=151.4

Q ss_pred             CCCCceEEEEcCChhhHhhcCCCCcceEEcCC-CCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHhh
Q 036903           11 FGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRG-LNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGS   89 (323)
Q Consensus        11 ~~~gs~IlvTTR~~~v~~~~~~~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig~   89 (323)
                      .++||+||||||++.++..+. .....+.+++ |++++|++||...++..   .++.++++++|+++|+|+||||+++|+
T Consensus       254 ~~~~~~ilvTtR~~~~~~~~~-~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~  329 (1249)
T 3sfz_A          254 FDNQCQILLTTRDKSVTDSVM-GPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGA  329 (1249)
T ss_dssp             TCSSCEEEEEESSTTTTTTCC-SCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHH
T ss_pred             hcCCCEEEEEcCCHHHHHhhc-CCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHH
Confidence            478999999999999985432 2567899996 99999999999988433   234556799999999999999999999


Q ss_pred             hhcCCChHHHHHHHHHhhcCC-----------cccHHHHHHHHhcCCChhhHhHhhhhcccCCCC--CHHHHHHHHhhcc
Q 036903           90 FLHRKSKLDWENALENLKRSS-----------DFEIYDVLKISYNELNPEEKSLFLDIACFFAGE--DKNLVTKILDDSN  156 (323)
Q Consensus        90 ~L~~~~~~~w~~~l~~l~~~~-----------~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~--~~~~l~~~w~~~g  156 (323)
                      +|+.++ .+|+.+++++....           ..++..++.+||+.||++.|+||+|||+||+++  +.+.++.+|.+++
T Consensus       330 ~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~  408 (1249)
T 3sfz_A          330 LLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLET  408 (1249)
T ss_dssp             HHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH
T ss_pred             HhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCH
Confidence            999876 57999998875442           246899999999999999999999999999984  5567999998776


Q ss_pred             h----HHHHhhhCCcceEcCCC---eEEecHHHHHHHHHHHhhh
Q 036903          157 Y----VLNVLVDKSLLRISRYN---KLQMHDLLQEMGREIVRQE  193 (323)
Q Consensus       157 ~----~l~~L~~~~ll~~~~~~---~~~mh~lv~~~~~~~~~~~  193 (323)
                      .    ++++|+++||++...++   +|+||++||+|+++.+.++
T Consensus       409 ~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          409 EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            6    99999999999987655   4999999999999987665

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.88  E-value=3.2e-23  Score=206.37  Aligned_cols=157  Identities=20%  Similarity=0.303  Sum_probs=129.6

Q ss_pred             CCCceEEEEcCChhhHhhcCCCCcceEEcC------CCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHH
Q 036903           12 GPGSRIIVTTRDKRVLDNFGVPNTNIYKVR------GLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALR   85 (323)
Q Consensus        12 ~~gs~IlvTTR~~~v~~~~~~~~~~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~   85 (323)
                      ++||+||||||++.++..+.  ....|.++      +|+.+|||+||.+.. +..  .   .++..+|   |+|+||||+
T Consensus       263 ~pGSRILVTTRd~~Va~~l~--g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~--~---eeL~~eI---CgGLPLALk  331 (1221)
T 1vt4_I          263 NLSCKILLTTRFKQVTDFLS--AATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR--P---QDLPREV---LTTNPRRLS  331 (1221)
T ss_dssp             HSSCCEEEECSCSHHHHHHH--HHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC--T---TTHHHHH---CCCCHHHHH
T ss_pred             CCCeEEEEeccChHHHHhcC--CCeEEEecCccccCCcCHHHHHHHHHHHc-CCC--H---HHHHHHH---hCCCHHHHH
Confidence            47999999999999987554  33456777      999999999999984 322  1   2334444   999999999


Q ss_pred             HHhhhhcCC--ChHHHHHHHHHhhcCCcccHHHHHHHHhcCCChhh-HhHhhhhcccCCCCC--HHHHHHHHhhcch---
Q 036903           86 VLGSFLHRK--SKLDWENALENLKRSSDFEIYDVLKISYNELNPEE-KSLFLDIACFFAGED--KNLVTKILDDSNY---  157 (323)
Q Consensus        86 ~ig~~L~~~--~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~-k~cfl~~s~fp~~~~--~~~l~~~w~~~g~---  157 (323)
                      ++|++|+.+  +..+|+..       ....+..++.+||+.||++. |+||++||+||+++.  .+.++.+|+++|.   
T Consensus       332 LaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedA  404 (1221)
T 1vt4_I          332 IIAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV  404 (1221)
T ss_dssp             HHHHHHHHSCSSHHHHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHH
T ss_pred             HHHHHHhCCCCCHHHHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHH
Confidence            999999987  67788753       34689999999999999999 999999999999855  4569999998852   


Q ss_pred             --HHHHhhhCCcceEcC-CCeEEecHHHHHHH
Q 036903          158 --VLNVLVDKSLLRISR-YNKLQMHDLLQEMG  186 (323)
Q Consensus       158 --~l~~L~~~~ll~~~~-~~~~~mh~lv~~~~  186 (323)
                        ++++|+++||++..+ .++|+|||++++++
T Consensus       405 e~~L~eLvdRSLLq~d~~~~rYrMHDLllELr  436 (1221)
T 1vt4_I          405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELK  436 (1221)
T ss_dssp             HHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred             HHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence              999999999999863 56899999999865

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.88  E-value=3.7e-22  Score=194.22  Aligned_cols=173  Identities=26%  Similarity=0.384  Sum_probs=142.0

Q ss_pred             CCCCceEEEEcCChhhHhhcCCCCcceEEc---CCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHH
Q 036903           11 FGPGSRIIVTTRDKRVLDNFGVPNTNIYKV---RGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVL   87 (323)
Q Consensus        11 ~~~gs~IlvTTR~~~v~~~~~~~~~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~i   87 (323)
                      .++||+||||||+..++..+.   ...+.+   ++|+.+|+++||...++...   ....+.+.+|+++|+|+||||..+
T Consensus       254 l~~~~~ilvTsR~~~~~~~~~---~~~~~v~~l~~L~~~ea~~L~~~~~~~~~---~~~~~~~~~i~~~~~G~PLal~~~  327 (591)
T 1z6t_A          254 FDSQCQILLTTRDKSVTDSVM---GPKYVVPVESSLGKEKGLEILSLFVNMKK---ADLPEQAHSIIKECKGSPLVVSLI  327 (591)
T ss_dssp             TCSSCEEEEEESCGGGGTTCC---SCEEEEECCSSCCHHHHHHHHHHHHTSCG---GGSCTHHHHHHHHHTTCHHHHHHH
T ss_pred             hcCCCeEEEECCCcHHHHhcC---CCceEeecCCCCCHHHHHHHHHHHhCCCc---ccccHHHHHHHHHhCCCcHHHHHH
Confidence            467999999999999887653   234554   58999999999999986422   223456899999999999999999


Q ss_pred             hhhhcCCChHHHHHHHHHhhcCC-----------cccHHHHHHHHhcCCChhhHhHhhhhcccCCC--CCHHHHHHHHhh
Q 036903           88 GSFLHRKSKLDWENALENLKRSS-----------DFEIYDVLKISYNELNPEEKSLFLDIACFFAG--EDKNLVTKILDD  154 (323)
Q Consensus        88 g~~L~~~~~~~w~~~l~~l~~~~-----------~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~--~~~~~l~~~w~~  154 (323)
                      |++++.+. .+|+.+++.+....           ..++..++..||+.||++.|.||++||+||++  ++.+.+..+|..
T Consensus       328 a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~  406 (591)
T 1z6t_A          328 GALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDM  406 (591)
T ss_dssp             HHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTC
T ss_pred             HHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhcc
Confidence            99998774 47998888876432           24789999999999999999999999999987  455668899987


Q ss_pred             cch----HHHHhhhCCcceEcCC---CeEEecHHHHHHHHHHH
Q 036903          155 SNY----VLNVLVDKSLLRISRY---NKLQMHDLLQEMGREIV  190 (323)
Q Consensus       155 ~g~----~l~~L~~~~ll~~~~~---~~~~mh~lv~~~~~~~~  190 (323)
                      ++.    ++++|+++||++...+   ..|+||+++|++++...
T Consensus       407 ~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~  449 (591)
T 1z6t_A          407 ETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN  449 (591)
T ss_dssp             CHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence            644    8999999999986543   36999999999999873

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.76  E-value=2.8e-08  Score=80.83  Aligned_cols=87  Identities=21%  Similarity=0.305  Sum_probs=69.3

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCC-C
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTN-L  299 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~-i  299 (323)
                      .++.+.+..+.+  ..+.+..|.++++|+.|+|++|.+         ..+|.. +..++ +|++|+|++|.+..+|.. +
T Consensus        34 ~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l---------~~i~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~  101 (174)
T 2r9u_A           34 DKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKL---------TAIPTGVFDKLT-QLTQLDLNDNHLKSIPRGAF  101 (174)
T ss_dssp             TCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred             CCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCC---------CccChhHhCCcc-hhhEEECCCCccceeCHHHh
Confidence            455554444433  345567889999999999999987         567765 57898 999999999999999987 6


Q ss_pred             C-CCCceEEEcCCCcccccccc
Q 036903          300 I-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       300 ~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      + +.+|++|+|++|.+.-.|.+
T Consensus       102 ~~l~~L~~L~L~~N~~~c~~~~  123 (174)
T 2r9u_A          102 DNLKSLTHIYLYNNPWDCECRD  123 (174)
T ss_dssp             TTCTTCSEEECCSSCBCTTBGG
T ss_pred             ccccCCCEEEeCCCCccccccc
Confidence            6 99999999999988777654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.69  E-value=3.9e-08  Score=83.51  Aligned_cols=86  Identities=20%  Similarity=0.240  Sum_probs=52.8

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCCCC
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTNLI  300 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~i~  300 (323)
                      .++.+.+..+.+  ..+....|.++++|++|+|++|.+         ..+|.. +..++ +|++|+|++|.+..+|..+.
T Consensus        65 ~L~~L~L~~N~l--~~i~~~~~~~l~~L~~L~Ls~N~l---------~~l~~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~  132 (229)
T 3e6j_A           65 NLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQL---------TVLPSAVFDRLV-HLKELFMCCNKLTELPRGIE  132 (229)
T ss_dssp             TCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCSCCTTGG
T ss_pred             CCcEEECCCCCC--CCcChhhcccCCCcCEEECCCCcC---------CccChhHhCcch-hhCeEeccCCcccccCcccc
Confidence            344444433332  233445566667777777776665         344433 46666 77777777777777777765


Q ss_pred             -CCCceEEEcCCCccccccc
Q 036903          301 -TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       301 -L~~L~~L~l~~~~i~~lP~  319 (323)
                       +.+|++|+|++|.++.+|.
T Consensus       133 ~l~~L~~L~L~~N~l~~~~~  152 (229)
T 3e6j_A          133 RLTHLTHLALDQNQLKSIPH  152 (229)
T ss_dssp             GCTTCSEEECCSSCCCCCCT
T ss_pred             cCCCCCEEECCCCcCCccCH
Confidence             7777777777777776664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.68  E-value=6e-08  Score=82.36  Aligned_cols=89  Identities=22%  Similarity=0.212  Sum_probs=72.5

Q ss_pred             ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCCCCCC
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPTNL  299 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~~i  299 (323)
                      ..++.+.+..+.+  ..+.+..|.++++|+.|+|++|.+         ..+|. .+..++ +|++|+|++|.+..+|...
T Consensus        40 ~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l---------~~i~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~  107 (229)
T 3e6j_A           40 TNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQL---------GALPVGVFDSLT-QLTVLDLGTNQLTVLPSAV  107 (229)
T ss_dssp             TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTT
T ss_pred             CCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCC---------CCcChhhcccCC-CcCEEECCCCcCCccChhH
Confidence            3455555554443  345567889999999999999987         56664 468899 9999999999999998874


Q ss_pred             -C-CCCceEEEcCCCccccccccc
Q 036903          300 -I-TDKLVVLNLPCSNVELLWEEK  321 (323)
Q Consensus       300 -~-L~~L~~L~l~~~~i~~lP~~i  321 (323)
                       + +.+|++|++++|+++.+|.++
T Consensus       108 ~~~l~~L~~L~Ls~N~l~~lp~~~  131 (229)
T 3e6j_A          108 FDRLVHLKELFMCCNKLTELPRGI  131 (229)
T ss_dssp             TTTCTTCCEEECCSSCCCSCCTTG
T ss_pred             hCcchhhCeEeccCCcccccCccc
Confidence             6 999999999999999999765

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.64  E-value=9.7e-08  Score=78.90  Aligned_cols=86  Identities=19%  Similarity=0.273  Sum_probs=60.3

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccC-CCccCcCCCceeEEecCCCCCCCCCC-C
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLD-QGLDYLPEELTYLHWHGYPLRTLPTN-L  299 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp-~~i~~L~~~Lr~L~l~~~~i~~LP~~-i  299 (323)
                      .++.+.+..+.+..  + +..|.++++|+.|+|++|.+         ..++ ..+..++ +|++|+|++|.+..+|.. +
T Consensus        32 ~l~~L~L~~n~i~~--i-p~~~~~l~~L~~L~Ls~N~i---------~~i~~~~f~~l~-~L~~L~Ls~N~l~~i~~~~f   98 (193)
T 2wfh_A           32 DVTELYLDGNQFTL--V-PKELSNYKHLTLIDLSNNRI---------STLSNQSFSNMT-QLLTLILSYNRLRCIPPRTF   98 (193)
T ss_dssp             TCCEEECCSSCCCS--C-CGGGGGCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTT
T ss_pred             CCCEEECCCCcCch--h-HHHhhcccCCCEEECCCCcC---------CEeCHhHccCCC-CCCEEECCCCccCEeCHHHh
Confidence            45555555444432  2 25778888888888888876         3343 4577787 888888888888877764 5


Q ss_pred             C-CCCceEEEcCCCcccccccc
Q 036903          300 I-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       300 ~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      + +.+|++|+|++|.++.+|.+
T Consensus        99 ~~l~~L~~L~L~~N~l~~~~~~  120 (193)
T 2wfh_A           99 DGLKSLRLLSLHGNDISVVPEG  120 (193)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTT
T ss_pred             CCCCCCCEEECCCCCCCeeChh
Confidence            5 88888888888888877764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.63  E-value=8.3e-08  Score=81.00  Aligned_cols=73  Identities=19%  Similarity=0.248  Sum_probs=51.7

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCC-CCC-CCCceEEEcCCCcc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPT-NLI-TDKLVVLNLPCSNV  314 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~-~i~-L~~L~~L~l~~~~i  314 (323)
                      +.+..|.++++|++|+|++|.+         ..+|.. +..++ +|++|+|++|.+..+|. .++ +.+|++|+|++|.+
T Consensus        71 ~~~~~~~~l~~L~~L~Ls~N~l---------~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  140 (220)
T 2v9t_B           71 LAPDAFQGLRSLNSLVLYGNKI---------TELPKSLFEGLF-SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL  140 (220)
T ss_dssp             ECTTTTTTCSSCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cCHHHhhCCcCCCEEECCCCcC---------CccCHhHccCCC-CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcC
Confidence            4456677777777777777766         455554 46677 78888888887777744 455 78888888888877


Q ss_pred             cccccc
Q 036903          315 ELLWEE  320 (323)
Q Consensus       315 ~~lP~~  320 (323)
                      +.+|.+
T Consensus       141 ~~~~~~  146 (220)
T 2v9t_B          141 QTIAKG  146 (220)
T ss_dssp             SCCCTT
T ss_pred             CEECHH
Confidence            777753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.63  E-value=2.3e-08  Score=99.27  Aligned_cols=83  Identities=19%  Similarity=0.243  Sum_probs=60.9

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-  300 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-  300 (323)
                      .++.+.+..+.+.   ..+..|.++++|++|+|++|.+         ..+|..++.|+ +|++|+|++|.+..+|.+++ 
T Consensus       248 ~L~~L~Ls~N~l~---~lp~~~~~l~~L~~L~Ls~N~l---------~~lp~~~~~l~-~L~~L~L~~N~l~~lp~~~~~  314 (727)
T 4b8c_D          248 FLTRLYLNGNSLT---ELPAEIKNLSNLRVLDLSHNRL---------TSLPAELGSCF-QLKYFYFFDNMVTTLPWEFGN  314 (727)
T ss_dssp             SCSCCBCTTSCCS---CCCGGGGGGTTCCEEECTTSCC---------SSCCSSGGGGT-TCSEEECCSSCCCCCCSSTTS
T ss_pred             CCCEEEeeCCcCc---ccChhhhCCCCCCEEeCcCCcC---------CccChhhcCCC-CCCEEECCCCCCCccChhhhc
Confidence            3444444434332   2345677888888888888876         57788888888 88888888888888888887 


Q ss_pred             CCCceEEEcCCCccccc
Q 036903          301 TDKLVVLNLPCSNVELL  317 (323)
Q Consensus       301 L~~L~~L~l~~~~i~~l  317 (323)
                      |.+|++|+|++|.+...
T Consensus       315 l~~L~~L~L~~N~l~~~  331 (727)
T 4b8c_D          315 LCNLQFLGVEGNPLEKQ  331 (727)
T ss_dssp             CTTCCCEECTTSCCCSH
T ss_pred             CCCccEEeCCCCccCCC
Confidence            88888888888887643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.63  E-value=1.2e-07  Score=76.72  Aligned_cols=85  Identities=21%  Similarity=0.258  Sum_probs=66.3

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCC-C
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTN-L  299 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~-i  299 (323)
                      .++.+.+..+.+  ..+.+..|.++++|++|+|++|.+         ..+|.. +..++ +|++|+|++|.+..+|.. +
T Consensus        31 ~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l---------~~l~~~~f~~l~-~L~~L~L~~N~l~~~~~~~~   98 (170)
T 3g39_A           31 TTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQL---------TVLPAGVFDKLT-QLTQLSLNDNQLKSIPRGAF   98 (170)
T ss_dssp             TCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred             CCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCc---------CccChhhccCCC-CCCEEECCCCccCEeCHHHh
Confidence            445554444433  345577889999999999999987         566665 58898 999999999999999886 6


Q ss_pred             C-CCCceEEEcCCCcccccc
Q 036903          300 I-TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       300 ~-L~~L~~L~l~~~~i~~lP  318 (323)
                      + +.+|++|+|++|.+.-.+
T Consensus        99 ~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           99 DNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             TTCTTCCEEECCSSCBCTTB
T ss_pred             cCCCCCCEEEeCCCCCCCCc
Confidence            6 999999999999765443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.61  E-value=1.2e-07  Score=79.98  Aligned_cols=72  Identities=21%  Similarity=0.208  Sum_probs=44.4

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCccc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i~  315 (323)
                      +....|..+++|+.|+|++|.+.        ...|..+..++ +|++|+|++|.+..+|..+ . +.+|++|+|++|.++
T Consensus        47 i~~~~~~~l~~L~~L~Ls~N~i~--------~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~  117 (220)
T 2v9t_B           47 IPPGAFSPYKKLRRIDLSNNQIS--------ELAPDAFQGLR-SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN  117 (220)
T ss_dssp             ECTTSSTTCTTCCEEECCSSCCC--------EECTTTTTTCS-SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCHhHhhCCCCCCEEECCCCcCC--------CcCHHHhhCCc-CCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCC
Confidence            34445666666666666666651        22355666666 6666666666666666653 4 666666666666666


Q ss_pred             ccc
Q 036903          316 LLW  318 (323)
Q Consensus       316 ~lP  318 (323)
                      .+|
T Consensus       118 ~~~  120 (220)
T 2v9t_B          118 CLR  120 (220)
T ss_dssp             CCC
T ss_pred             EeC
Confidence            554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.61  E-value=1.4e-07  Score=76.45  Aligned_cols=73  Identities=26%  Similarity=0.341  Sum_probs=41.1

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCcc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNV  314 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i  314 (323)
                      +....|.++++|++|++++|.+         ..+|.. +..++ +|++|++++|.+..+|... + +.+|++|++++|.+
T Consensus        43 ~~~~~~~~l~~L~~L~l~~n~l---------~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  112 (177)
T 2o6r_A           43 LPHGVFDKLTQLTKLSLSQNQI---------QSLPDGVFDKLT-KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL  112 (177)
T ss_dssp             CCTTTTTTCTTCSEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             eCHHHhcCcccccEEECCCCcc---------eEeChhHccCCC-ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence            3344456666666666666655         333332 45555 6666666666666665542 4 66666666666666


Q ss_pred             cccccc
Q 036903          315 ELLWEE  320 (323)
Q Consensus       315 ~~lP~~  320 (323)
                      +.+|.+
T Consensus       113 ~~~~~~  118 (177)
T 2o6r_A          113 KSVPDG  118 (177)
T ss_dssp             SCCCTT
T ss_pred             eEeCHH
Confidence            555553

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.59  E-value=4e-08  Score=79.06  Aligned_cols=47  Identities=15%  Similarity=0.019  Sum_probs=24.7

Q ss_pred             CCccCcCCCceeEEecCCCCCCCCC----CCC-CCCceEEEcCCCcccccccc
Q 036903          273 QGLDYLPEELTYLHWHGYPLRTLPT----NLI-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       273 ~~i~~L~~~Lr~L~l~~~~i~~LP~----~i~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      ..+..++ +|++|++++|.+..+|.    .+. +++|++|++++|.+.++|++
T Consensus       114 ~~l~~l~-~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          114 EPLKKLE-CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             GGGSSCS-CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             HHHhcCC-CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            3445555 55555555555555554    333 55555555555555555544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.59  E-value=3.8e-08  Score=79.97  Aligned_cols=85  Identities=22%  Similarity=0.209  Sum_probs=64.9

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCc-cCcCCCceeEEecCCCCCCCCC--C
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGL-DYLPEELTYLHWHGYPLRTLPT--N  298 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i-~~L~~~Lr~L~l~~~~i~~LP~--~  298 (323)
                      .++.+.+..+.+..+    ..|.++++|++|++++|.+         ..+|..+ ..++ +|++|++++|.+..+|.  .
T Consensus        43 ~L~~L~Ls~N~l~~~----~~l~~l~~L~~L~Ls~N~l---------~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~~~  108 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRI---------CRIGEGLDQALP-DLTELILTNNSLVELGDLDP  108 (176)
T ss_dssp             CCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCC---------CEECSCHHHHCT-TCCEEECCSCCCCCGGGGGG
T ss_pred             CCCEEECCCCCCCcc----cccccCCCCCEEECCCCcc---------cccCcchhhcCC-CCCEEECCCCcCCcchhhHh
Confidence            455665555544332    4677888899999988887         5667665 7888 89999999998888887  6


Q ss_pred             CC-CCCceEEEcCCCcccccccc
Q 036903          299 LI-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       299 i~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      ++ +++|++|++++|.+..+|..
T Consensus       109 l~~l~~L~~L~l~~N~i~~~~~~  131 (176)
T 1a9n_A          109 LASLKSLTYLCILRNPVTNKKHY  131 (176)
T ss_dssp             GGGCTTCCEEECCSSGGGGSTTH
T ss_pred             hhcCCCCCEEEecCCCCCCcHhH
Confidence            76 88999999999988887763

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.59  E-value=1.4e-07  Score=76.59  Aligned_cols=64  Identities=20%  Similarity=0.194  Sum_probs=58.1

Q ss_pred             CCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCcccccccc
Q 036903          247 TNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       247 ~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      ++|++|+|++|.+         ..+ |..+..++ +|++|+|++|.+..+|..+ + +.+|++|+|++|.++.+|.+
T Consensus        33 ~~L~~L~Ls~N~l---------~~~~~~~~~~l~-~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~   99 (174)
T 2r9u_A           33 TDKQRLWLNNNQI---------TKLEPGVFDHLV-NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG   99 (174)
T ss_dssp             TTCSEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCcEEEeCCCCc---------cccCHHHhcCCc-CCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHH
Confidence            7899999999988         444 67899999 9999999999999999975 6 99999999999999999985

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.58  E-value=3.8e-08  Score=79.16  Aligned_cols=87  Identities=21%  Similarity=0.152  Sum_probs=71.9

Q ss_pred             cceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCC--C
Q 036903          220 TDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLP--T  297 (323)
Q Consensus       220 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP--~  297 (323)
                      ...++.+.+..+.+...    ..|..+++|++|++++|.+.        ..+|..+..++ +|++|++++|.+..+|  .
T Consensus        48 l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~  114 (168)
T 2ell_A           48 FVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIF--------GGLDMLAEKLP-NLTHLNLSGNKLKDISTLE  114 (168)
T ss_dssp             GGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCC--------SCCCHHHHHCT-TCCEEECBSSSCCSSGGGG
T ss_pred             CCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCc--------hHHHHHHhhCC-CCCEEeccCCccCcchhHH
Confidence            44677777776655443    67889999999999999882        22677777799 9999999999999998  6


Q ss_pred             CCC-CCCceEEEcCCCccccccc
Q 036903          298 NLI-TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       298 ~i~-L~~L~~L~l~~~~i~~lP~  319 (323)
                      .++ +++|++|++++|.+..+|.
T Consensus       115 ~l~~l~~L~~L~l~~N~l~~~~~  137 (168)
T 2ell_A          115 PLKKLECLKSLDLFNCEVTNLND  137 (168)
T ss_dssp             GGSSCSCCCEEECCSSGGGTSTT
T ss_pred             HHhcCCCCCEEEeeCCcCcchHH
Confidence            777 9999999999999998886

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.58  E-value=1.3e-07  Score=79.81  Aligned_cols=70  Identities=13%  Similarity=0.167  Sum_probs=44.1

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccC-CCccCcCCCceeEEecCCCCCCC-CCCCC-CCCceEEEcCCCcc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLD-QGLDYLPEELTYLHWHGYPLRTL-PTNLI-TDKLVVLNLPCSNV  314 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp-~~i~~L~~~Lr~L~l~~~~i~~L-P~~i~-L~~L~~L~l~~~~i  314 (323)
                      +.+..|.++++|+.|+|++|.+         ..+| ..+..++ +|++|+|++|.+..+ |..+. +.+|++|+|++|.+
T Consensus        72 i~~~~~~~l~~L~~L~Ls~N~l---------~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  141 (220)
T 2v70_A           72 IEEGAFEGASGVNEILLTSNRL---------ENVQHKMFKGLE-SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI  141 (220)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCC---------CCCCGGGGTTCS-SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred             ECHHHhCCCCCCCEEECCCCcc---------CccCHhHhcCCc-CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence            3445566677777777777665         3333 3366666 777777777766666 34455 77777777777766


Q ss_pred             ccc
Q 036903          315 ELL  317 (323)
Q Consensus       315 ~~l  317 (323)
                      +.+
T Consensus       142 ~~~  144 (220)
T 2v70_A          142 TTV  144 (220)
T ss_dssp             CCB
T ss_pred             CEE
Confidence            666

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.55  E-value=2.6e-08  Score=78.54  Aligned_cols=86  Identities=19%  Similarity=0.168  Sum_probs=64.3

Q ss_pred             ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCC--CC
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLP--TN  298 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP--~~  298 (323)
                      ..++.+.+..+.+...    ..|.++++|++|++++|.+.        ..+|..++.++ +|++|++++|.+..+|  ..
T Consensus        42 ~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~--------~~~~~~~~~l~-~L~~L~ls~N~i~~~~~~~~  108 (149)
T 2je0_A           42 EELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVS--------GGLEVLAEKCP-NLTHLNLSGNKIKDLSTIEP  108 (149)
T ss_dssp             TTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCC--------SCTHHHHHHCT-TCCEEECTTSCCCSHHHHGG
T ss_pred             CCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCccc--------chHHHHhhhCC-CCCEEECCCCcCCChHHHHH
Confidence            4556665555544333    66788888899999888872        22666677788 8999999999888876  67


Q ss_pred             CC-CCCceEEEcCCCccccccc
Q 036903          299 LI-TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       299 i~-L~~L~~L~l~~~~i~~lP~  319 (323)
                      ++ +++|++|++++|.+..+|.
T Consensus       109 ~~~l~~L~~L~l~~N~l~~~~~  130 (149)
T 2je0_A          109 LKKLENLKSLDLFNCEVTNLND  130 (149)
T ss_dssp             GGGCTTCCEEECTTCGGGGSTT
T ss_pred             HhhCCCCCEEeCcCCcccchHH
Confidence            76 8999999999998887775

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.54  E-value=2.8e-07  Score=76.77  Aligned_cols=87  Identities=22%  Similarity=0.316  Sum_probs=54.1

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCC-C
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTN-L  299 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~-i  299 (323)
                      .++.+.+..+.+.  .+....|.++++|++|++++|.+         ..+|.. +..++ +|++|++++|.+..+|.. +
T Consensus        53 ~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l---------~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~  120 (208)
T 2o6s_A           53 SLTQLYLGGNKLQ--SLPNGVFNKLTSLTYLNLSTNQL---------QSLPNGVFDKLT-QLKELALNTNQLQSLPDGVF  120 (208)
T ss_dssp             TCSEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred             cCcEEECCCCccC--ccChhhcCCCCCcCEEECCCCcC---------CccCHhHhcCcc-CCCEEEcCCCcCcccCHhHh
Confidence            4455544433332  34445566777777777777765         344433 56676 777777777777777665 3


Q ss_pred             C-CCCceEEEcCCCcccccccc
Q 036903          300 I-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       300 ~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      + +.+|++|++++|.++.+|.+
T Consensus       121 ~~l~~L~~L~l~~N~l~~~~~~  142 (208)
T 2o6s_A          121 DKLTQLKDLRLYQNQLKSVPDG  142 (208)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTT
T ss_pred             ccCCcCCEEECCCCccceeCHH
Confidence            5 77777777777777666653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.53  E-value=5.3e-08  Score=96.67  Aligned_cols=88  Identities=19%  Similarity=0.120  Sum_probs=73.3

Q ss_pred             ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI  300 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~  300 (323)
                      ..++.+.+..+.+  ..+....| ++++|+.|+|++|.+         ..+|..++.|+ +|++|+|++|.+..+|..++
T Consensus       224 ~~L~~L~Ls~n~l--~~l~~~~~-~l~~L~~L~Ls~N~l---------~~lp~~~~~l~-~L~~L~Ls~N~l~~lp~~~~  290 (727)
T 4b8c_D          224 QLWHALDLSNLQI--FNISANIF-KYDFLTRLYLNGNSL---------TELPAEIKNLS-NLRVLDLSHNRLTSLPAELG  290 (727)
T ss_dssp             CCCCEEECTTSCC--SCCCGGGG-GCCSCSCCBCTTSCC---------SCCCGGGGGGT-TCCEEECTTSCCSSCCSSGG
T ss_pred             CCCcEEECCCCCC--CCCChhhc-CCCCCCEEEeeCCcC---------cccChhhhCCC-CCCEEeCcCCcCCccChhhc
Confidence            3455555444433  34444444 899999999999987         58999999999 99999999999999999998


Q ss_pred             -CCCceEEEcCCCccccccccc
Q 036903          301 -TDKLVVLNLPCSNVELLWEEK  321 (323)
Q Consensus       301 -L~~L~~L~l~~~~i~~lP~~i  321 (323)
                       |.+|++|+|++|.+..+|.++
T Consensus       291 ~l~~L~~L~L~~N~l~~lp~~~  312 (727)
T 4b8c_D          291 SCFQLKYFYFFDNMVTTLPWEF  312 (727)
T ss_dssp             GGTTCSEEECCSSCCCCCCSST
T ss_pred             CCCCCCEEECCCCCCCccChhh
Confidence             999999999999999999875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.51  E-value=2.1e-07  Score=76.71  Aligned_cols=67  Identities=12%  Similarity=0.155  Sum_probs=43.9

Q ss_pred             hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCccccc
Q 036903          242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVELL  317 (323)
Q Consensus       242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~~l  317 (323)
                      .|.++++|+.|+|++|.+.        ...|..+..++ +|++|+|++|.+..+|.. ++ +++|++|+|++|.++.+
T Consensus        49 ~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  117 (192)
T 1w8a_A           49 LFGRLPHLVKLELKRNQLT--------GIEPNAFEGAS-HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCV  117 (192)
T ss_dssp             SGGGCTTCCEEECCSSCCC--------CBCTTTTTTCT-TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred             ccccCCCCCEEECCCCCCC--------CcCHhHcCCcc-cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence            3667777777777777651        22355666676 777777777777766654 44 77777777777766655

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.51  E-value=3.3e-07  Score=78.73  Aligned_cols=72  Identities=22%  Similarity=0.283  Sum_probs=45.1

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNV  314 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i  314 (323)
                      +....|..+++|++|+|++|.+         ..+|.. +..++ +|++|+|++|.+..+|.. ++ +.+|++|+|++|.+
T Consensus        98 ~~~~~~~~l~~L~~L~L~~N~l---------~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  167 (251)
T 3m19_A           98 LPLGVFDHLTQLDKLYLGGNQL---------KSLPSGVFDRLT-KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL  167 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cChhHhcccCCCCEEEcCCCcC---------CCcChhHhccCC-cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcC
Confidence            3444556666666666666655         344443 45666 777777777777766663 55 67777777777766


Q ss_pred             ccccc
Q 036903          315 ELLWE  319 (323)
Q Consensus       315 ~~lP~  319 (323)
                      +.+|.
T Consensus       168 ~~~~~  172 (251)
T 3m19_A          168 QSVPH  172 (251)
T ss_dssp             SCCCT
T ss_pred             CccCH
Confidence            66664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.51  E-value=3.7e-07  Score=75.97  Aligned_cols=87  Identities=23%  Similarity=0.303  Sum_probs=70.4

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCCC-
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTNL-  299 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~i-  299 (323)
                      .++.+.+....+.  .+....|.++++|++|+++++.+         ..+|.. +..++ +|++|++++|.+..+|... 
T Consensus        29 ~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l---------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~   96 (208)
T 2o6s_A           29 QTTYLDLETNSLK--SLPNGVFDELTSLTQLYLGGNKL---------QSLPNGVFNKLT-SLTYLNLSTNQLQSLPNGVF   96 (208)
T ss_dssp             TCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred             CCcEEEcCCCccC--cCChhhhcccccCcEEECCCCcc---------CccChhhcCCCC-CcCEEECCCCcCCccCHhHh
Confidence            4555555544432  45566789999999999999987         455554 68898 9999999999999999874 


Q ss_pred             C-CCCceEEEcCCCcccccccc
Q 036903          300 I-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       300 ~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      + +.+|++|++++|.++.+|.+
T Consensus        97 ~~l~~L~~L~L~~N~l~~~~~~  118 (208)
T 2o6s_A           97 DKLTQLKELALNTNQLQSLPDG  118 (208)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTT
T ss_pred             cCccCCCEEEcCCCcCcccCHh
Confidence            6 99999999999999988875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.50  E-value=1.6e-07  Score=76.15  Aligned_cols=86  Identities=17%  Similarity=0.079  Sum_probs=68.2

Q ss_pred             cceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC
Q 036903          220 TDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL  299 (323)
Q Consensus       220 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i  299 (323)
                      ...++.+.+..+.+..+   +......++|++|++++|.+         ..+ ..++.++ +|++|++++|.+..+|..+
T Consensus        18 ~~~L~~L~l~~n~l~~i---~~~~~~~~~L~~L~Ls~N~l---------~~~-~~l~~l~-~L~~L~Ls~N~l~~~~~~~   83 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNEI---------RKL-DGFPLLR-RLKTLLVNNNRICRIGEGL   83 (176)
T ss_dssp             TTSCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSSCC---------CEE-CCCCCCS-SCCEEECCSSCCCEECSCH
T ss_pred             cCCceEEEeeCCCCchh---HHhhhcCCCCCEEECCCCCC---------Ccc-cccccCC-CCCEEECCCCcccccCcch
Confidence            44566776666555432   22333344999999999988         445 6789999 9999999999999999887


Q ss_pred             -C-CCCceEEEcCCCccccccc
Q 036903          300 -I-TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       300 -~-L~~L~~L~l~~~~i~~lP~  319 (323)
                       + +++|++|++++|.+..+|.
T Consensus        84 ~~~l~~L~~L~L~~N~i~~~~~  105 (176)
T 1a9n_A           84 DQALPDLTELILTNNSLVELGD  105 (176)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGG
T ss_pred             hhcCCCCCEEECCCCcCCcchh
Confidence             6 9999999999999998886

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.50  E-value=1.2e-07  Score=84.92  Aligned_cols=87  Identities=17%  Similarity=0.150  Sum_probs=51.4

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCC-CCCCCCCCCC
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGY-PLRTLPTNLI  300 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~-~i~~LP~~i~  300 (323)
                      .++.+.+..+.+.   ..+..|.++++|++|+|++|.+         ..+|..++.++ +|++|++++| .+..+|..++
T Consensus       105 ~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~Ls~n~l---------~~lp~~l~~l~-~L~~L~L~~n~~~~~~p~~~~  171 (328)
T 4fcg_A          105 HLQHMTIDAAGLM---ELPDTMQQFAGLETLTLARNPL---------RALPASIASLN-RLRELSIRACPELTELPEPLA  171 (328)
T ss_dssp             TCSEEEEESSCCC---CCCSCGGGGTTCSEEEEESCCC---------CCCCGGGGGCT-TCCEEEEEEETTCCCCCSCSE
T ss_pred             CCCEEECCCCCcc---chhHHHhccCCCCEEECCCCcc---------ccCcHHHhcCc-CCCEEECCCCCCccccChhHh
Confidence            4445444444332   2234456666666666666665         35666666666 6777777664 4556666552


Q ss_pred             ----------CCCceEEEcCCCccccccccc
Q 036903          301 ----------TDKLVVLNLPCSNVELLWEEK  321 (323)
Q Consensus       301 ----------L~~L~~L~l~~~~i~~lP~~i  321 (323)
                                +.+|++|++++|.++.+|.++
T Consensus       172 ~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l  202 (328)
T 4fcg_A          172 STDASGEHQGLVNLQSLRLEWTGIRSLPASI  202 (328)
T ss_dssp             EEC-CCCEEESTTCCEEEEEEECCCCCCGGG
T ss_pred             hccchhhhccCCCCCEEECcCCCcCcchHhh
Confidence                      666777777766666666543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.50  E-value=3.3e-07  Score=74.00  Aligned_cols=64  Identities=23%  Similarity=0.261  Sum_probs=57.9

Q ss_pred             CCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCcccccccc
Q 036903          247 TNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       247 ~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      ++|+.|+|++|.+         ..+ |..+..++ +|++|+|++|.+..+|..+ . +.+|++|+|++|+++.+|.+
T Consensus        30 ~~l~~L~L~~N~i---------~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~   96 (170)
T 3g39_A           30 TTTQVLYLYDNQI---------TKLEPGVFDRLT-QLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG   96 (170)
T ss_dssp             TTCSEEECCSSCC---------CCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCcEEEcCCCcC---------CccChhhhcCcc-cCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHH
Confidence            7899999999988         455 67799999 9999999999999999875 6 99999999999999999875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.49  E-value=3.9e-07  Score=78.27  Aligned_cols=87  Identities=23%  Similarity=0.291  Sum_probs=61.0

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccC-CCccCcCCCceeEEecCCCCCCCCCCC-
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLD-QGLDYLPEELTYLHWHGYPLRTLPTNL-  299 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp-~~i~~L~~~Lr~L~l~~~~i~~LP~~i-  299 (323)
                      .++.+.+..+.+  ..+.+..|.++++|++|++++|.+         ..+| ..+..++ +|++|+|++|.+..+|... 
T Consensus        60 ~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~  127 (251)
T 3m19_A           60 KLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQL---------ASLPLGVFDHLT-QLDKLYLGGNQLKSLPSGVF  127 (251)
T ss_dssp             TCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred             cCCEEECCCCcC--CccCHhHhccCCcCCEEECCCCcc---------cccChhHhcccC-CCCEEEcCCCcCCCcChhHh
Confidence            445544443332  234455677778888888887776         3444 4567787 8888888888888888764 


Q ss_pred             C-CCCceEEEcCCCcccccccc
Q 036903          300 I-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       300 ~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      + +.+|++|+|++|+++.+|.+
T Consensus       128 ~~l~~L~~L~Ls~N~l~~~~~~  149 (251)
T 3m19_A          128 DRLTKLKELRLNTNQLQSIPAG  149 (251)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTT
T ss_pred             ccCCcccEEECcCCcCCccCHH
Confidence            5 88888888888888888763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.49  E-value=1.4e-07  Score=90.90  Aligned_cols=64  Identities=17%  Similarity=0.105  Sum_probs=31.3

Q ss_pred             hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccc
Q 036903          243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELL  317 (323)
Q Consensus       243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~l  317 (323)
                      |.++++|+.|+|++|.+         ..+|..++.++ +|++|+|++|.++.+| .++ |++|++|+|++|.++.+
T Consensus       459 ~~~l~~L~~L~Ls~N~l---------~~lp~~~~~l~-~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~  523 (567)
T 1dce_A          459 LEQLLLVTHLDLSHNRL---------RALPPALAALR-CLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQS  523 (567)
T ss_dssp             GGGGTTCCEEECCSSCC---------CCCCGGGGGCT-TCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSS
T ss_pred             ccccccCcEeecCcccc---------cccchhhhcCC-CCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCC
Confidence            45555555555555554         34444444444 4444444444444444 333 44444444444444444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.48  E-value=1.1e-07  Score=74.76  Aligned_cols=86  Identities=17%  Similarity=0.115  Sum_probs=68.5

Q ss_pred             ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCC-CCCCC
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRT-LPTNL  299 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~-LP~~i  299 (323)
                      ..++.+.+..+.+... ..+..+..+++|+.|++++|.+         ..+ ..++.++ +|++|++++|.+.. +|..+
T Consensus        17 ~~l~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l---------~~~-~~~~~l~-~L~~L~Ls~n~i~~~~~~~~   84 (149)
T 2je0_A           17 SDVKELVLDNSRSNEG-KLEGLTDEFEELEFLSTINVGL---------TSI-ANLPKLN-KLKKLELSDNRVSGGLEVLA   84 (149)
T ss_dssp             GGCSEEECTTCBCBTT-BCCSCCTTCTTCCEEECTTSCC---------CCC-TTCCCCT-TCCEEECCSSCCCSCTHHHH
T ss_pred             ccCeEEEccCCcCChh-HHHHHHhhcCCCcEEECcCCCC---------CCc-hhhhcCC-CCCEEECCCCcccchHHHHh
Confidence            4566666655544311 2334678999999999999987         344 6788999 99999999999998 78777


Q ss_pred             C-CCCceEEEcCCCcccccc
Q 036903          300 I-TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       300 ~-L~~L~~L~l~~~~i~~lP  318 (323)
                      + +++|++|++++|.++.+|
T Consensus        85 ~~l~~L~~L~ls~N~i~~~~  104 (149)
T 2je0_A           85 EKCPNLTHLNLSGNKIKDLS  104 (149)
T ss_dssp             HHCTTCCEEECTTSCCCSHH
T ss_pred             hhCCCCCEEECCCCcCCChH
Confidence            7 999999999999998875

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.48  E-value=1.5e-07  Score=91.28  Aligned_cols=66  Identities=18%  Similarity=0.127  Sum_probs=33.4

Q ss_pred             chhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCccc
Q 036903          240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~  315 (323)
                      +.+|.++++|++|+|++|.+         ..+|. .+..|+ +|++|+|++|++..+|.. ++ |++|++|++++|.++
T Consensus        93 ~~~f~~L~~L~~L~Ls~N~l---------~~l~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~  161 (635)
T 4g8a_A           93 DGAYQSLSHLSTLILTGNPI---------QSLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ  161 (635)
T ss_dssp             TTTTTTCTTCCEEECTTCCC---------CEECGGGGTTCT-TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred             hhHhcCCCCCCEEEccCCcC---------CCCCHHHhcCCC-CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccc
Confidence            34445555555555555544         33332 245555 555555555555555543 34 555555555555554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.46  E-value=4.3e-07  Score=79.92  Aligned_cols=88  Identities=19%  Similarity=0.187  Sum_probs=63.4

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCCC-
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTNL-  299 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~i-  299 (323)
                      .++.+.+..+.+  ..+.+..|.++++|+.|+|++|.+         ..+|.. +..++ +|++|+|++|.++.+|..+ 
T Consensus       101 ~L~~L~l~~N~l--~~l~~~~~~~l~~L~~L~L~~N~l---------~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~  168 (290)
T 1p9a_G          101 ALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNEL---------KTLPPGLLTPTP-KLEKLSLANNNLTELPAGLL  168 (290)
T ss_dssp             TCCEEECCSSCC--CCCCSSTTTTCTTCCEEECTTSCC---------CCCCTTTTTTCT-TCCEEECTTSCCSCCCTTTT
T ss_pred             CCCEEECCCCcC--cccCHHHHcCCCCCCEEECCCCCC---------CccChhhccccc-CCCEEECCCCcCCccCHHHh
Confidence            444444443333  234456678888888888888876         445443 56787 8888888888888888875 


Q ss_pred             C-CCCceEEEcCCCccccccccc
Q 036903          300 I-TDKLVVLNLPCSNVELLWEEK  321 (323)
Q Consensus       300 ~-L~~L~~L~l~~~~i~~lP~~i  321 (323)
                      . +.+|++|++++|.++.+|.++
T Consensus       169 ~~l~~L~~L~L~~N~l~~ip~~~  191 (290)
T 1p9a_G          169 NGLENLDTLLLQENSLYTIPKGF  191 (290)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTT
T ss_pred             cCcCCCCEEECCCCcCCccChhh
Confidence            5 888888888888888888764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.45  E-value=2.6e-07  Score=89.01  Aligned_cols=71  Identities=23%  Similarity=0.216  Sum_probs=64.8

Q ss_pred             chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC--CCCCC-CCCceEEEcCCCcccc
Q 036903          240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL--PTNLI-TDKLVVLNLPCSNVEL  316 (323)
Q Consensus       240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L--P~~i~-L~~L~~L~l~~~~i~~  316 (323)
                      +..|.++++|+.|+|++|.+         ..+| .++.++ +|++|+|++|.+..+  |..++ |++|++|+|++|.++.
T Consensus       479 p~~~~~l~~L~~L~Ls~N~l---------~~lp-~l~~l~-~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          479 PPALAALRCLEVLQASDNAL---------ENVD-GVANLP-RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             CGGGGGCTTCCEEECCSSCC---------CCCG-GGTTCS-SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             chhhhcCCCCCEEECCCCCC---------CCCc-ccCCCC-CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            46889999999999999988         5678 899999 999999999999999  88898 9999999999999999


Q ss_pred             ccccc
Q 036903          317 LWEEK  321 (323)
Q Consensus       317 lP~~i  321 (323)
                      +|..+
T Consensus       548 ~~~~~  552 (567)
T 1dce_A          548 EEGIQ  552 (567)
T ss_dssp             SSSCT
T ss_pred             CccHH
Confidence            88754

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.44  E-value=2e-07  Score=83.56  Aligned_cols=88  Identities=16%  Similarity=0.175  Sum_probs=72.9

Q ss_pred             ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI  300 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~  300 (323)
                      ..++.+.+....+.  . .+..+.++++|++|+|++|.+         ..+|..++.++ +|++|+|++|.+..+|..++
T Consensus        81 ~~l~~L~L~~n~l~--~-lp~~l~~l~~L~~L~L~~n~l---------~~lp~~~~~l~-~L~~L~Ls~n~l~~lp~~l~  147 (328)
T 4fcg_A           81 PGRVALELRSVPLP--Q-FPDQAFRLSHLQHMTIDAAGL---------MELPDTMQQFA-GLETLTLARNPLRALPASIA  147 (328)
T ss_dssp             TTCCEEEEESSCCS--S-CCSCGGGGTTCSEEEEESSCC---------CCCCSCGGGGT-TCSEEEEESCCCCCCCGGGG
T ss_pred             cceeEEEccCCCch--h-cChhhhhCCCCCEEECCCCCc---------cchhHHHhccC-CCCEEECCCCccccCcHHHh
Confidence            45666666655543  2 344567799999999999987         58999999999 99999999999999999998


Q ss_pred             -CCCceEEEcCCC-ccccccccc
Q 036903          301 -TDKLVVLNLPCS-NVELLWEEK  321 (323)
Q Consensus       301 -L~~L~~L~l~~~-~i~~lP~~i  321 (323)
                       +.+|++|++++| .+..+|..+
T Consensus       148 ~l~~L~~L~L~~n~~~~~~p~~~  170 (328)
T 4fcg_A          148 SLNRLRELSIRACPELTELPEPL  170 (328)
T ss_dssp             GCTTCCEEEEEEETTCCCCCSCS
T ss_pred             cCcCCCEEECCCCCCccccChhH
Confidence             999999999997 567888764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.42  E-value=1.9e-07  Score=83.01  Aligned_cols=73  Identities=19%  Similarity=0.212  Sum_probs=48.1

Q ss_pred             chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC-CCCCCCC-CCCceEEEcCCCccc-c
Q 036903          240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR-TLPTNLI-TDKLVVLNLPCSNVE-L  316 (323)
Q Consensus       240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~-~LP~~i~-L~~L~~L~l~~~~i~-~  316 (323)
                      +..|.++++|++|++++|.+        ...+|..+..++ +|++|++++|.+. .+|..++ +++|++|++++|.+. .
T Consensus        94 p~~l~~l~~L~~L~Ls~n~l--------~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  164 (313)
T 1ogq_A           94 PPAIAKLTQLHYLYITHTNV--------SGAIPDFLSQIK-TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA  164 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEECC--------EEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE
T ss_pred             ChhHhcCCCCCEEECcCCee--------CCcCCHHHhCCC-CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc
Confidence            44556666666666666655        135666677777 7777777777666 6666676 777777777777766 6


Q ss_pred             ccccc
Q 036903          317 LWEEK  321 (323)
Q Consensus       317 lP~~i  321 (323)
                      +|..+
T Consensus       165 ~p~~l  169 (313)
T 1ogq_A          165 IPDSY  169 (313)
T ss_dssp             CCGGG
T ss_pred             CCHHH
Confidence            66543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.42  E-value=5.6e-07  Score=79.18  Aligned_cols=68  Identities=24%  Similarity=0.125  Sum_probs=56.2

Q ss_pred             hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCccccccccc
Q 036903          244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVELLWEEK  321 (323)
Q Consensus       244 ~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~~lP~~i  321 (323)
                      ..+++|++|++++|.+         ..+|..+..++ +|++|++++|.++.+|.. ++ +.+|++|++++|.++.+|.++
T Consensus        74 ~~l~~L~~L~Ls~N~l---------~~l~~~~~~l~-~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~  143 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQL---------QSLPLLGQTLP-ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL  143 (290)
T ss_dssp             SCCTTCCEEECCSSCC---------SSCCCCTTTCT-TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             CCCCcCCEEECCCCcC---------CcCchhhccCC-CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh
Confidence            5677777788877776         57888888888 999999999999998854 66 999999999999998888753

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.41  E-value=7.8e-07  Score=77.23  Aligned_cols=73  Identities=25%  Similarity=0.337  Sum_probs=47.6

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNV  314 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i  314 (323)
                      +.+..|.++++|+.|++++|.+         ..+|.. +..++ +|++|++++|.+..+|.. +. +++|++|++++|.+
T Consensus       124 ~~~~~~~~l~~L~~L~Ls~n~l---------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (270)
T 2o6q_A          124 LPPRVFDSLTKLTYLSLGYNEL---------QSLPKGVFDKLT-SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL  193 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             eCHHHhCcCcCCCEEECCCCcC---------CccCHhHccCCc-ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence            3344566667777777777665         344443 56666 777777777777777664 44 77777777777777


Q ss_pred             cccccc
Q 036903          315 ELLWEE  320 (323)
Q Consensus       315 ~~lP~~  320 (323)
                      +.+|.+
T Consensus       194 ~~~~~~  199 (270)
T 2o6q_A          194 KRVPEG  199 (270)
T ss_dssp             SCCCTT
T ss_pred             CcCCHH
Confidence            766653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.41  E-value=6.9e-07  Score=79.82  Aligned_cols=73  Identities=19%  Similarity=0.292  Sum_probs=62.3

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~  315 (323)
                      +.+..|.++++|+.|++++|.+         ..+ +..+..++ +|++|++++|.+..+|..+. +++|++|++++|.++
T Consensus       207 ~~~~~~~~l~~L~~L~Ls~n~l---------~~~~~~~~~~l~-~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          207 VDAASLKGLNNLAKLGLSFNSI---------SAVDNGSLANTP-HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             ECTGGGTTCTTCCEEECCSSCC---------CEECTTTGGGST-TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred             cCHHHhcCCCCCCEEECCCCcC---------ceeChhhccCCC-CCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC
Confidence            4456788999999999999987         334 45788888 99999999999999999997 999999999999999


Q ss_pred             ccccc
Q 036903          316 LLWEE  320 (323)
Q Consensus       316 ~lP~~  320 (323)
                      .+|.+
T Consensus       277 ~~~~~  281 (330)
T 1xku_A          277 AIGSN  281 (330)
T ss_dssp             CCCTT
T ss_pred             ccChh
Confidence            88764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.40  E-value=4.8e-07  Score=82.14  Aligned_cols=70  Identities=20%  Similarity=0.281  Sum_probs=37.7

Q ss_pred             chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC----C-CCCceEEEcCCCcc
Q 036903          240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL----I-TDKLVVLNLPCSNV  314 (323)
Q Consensus       240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i----~-L~~L~~L~l~~~~i  314 (323)
                      ...|.++++|++|+|++|.+.        ...|..+..++ +|++|+|++|.+..+|..+    . +.+|++|+|++|++
T Consensus       105 ~~~~~~l~~L~~L~L~~N~i~--------~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A          105 EFLFSDLQALEVLLLYNNHIV--------VVDRNAFEDMA-QLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC--------EECTTTTTTCT-TCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             HHHhCCCcCCCEEECCCCccc--------EECHHHhCCcc-cCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            334455555555555555441        12244555555 6666666666666666543    3 56666666666666


Q ss_pred             cccc
Q 036903          315 ELLW  318 (323)
Q Consensus       315 ~~lP  318 (323)
                      +.+|
T Consensus       176 ~~l~  179 (361)
T 2xot_A          176 KKLP  179 (361)
T ss_dssp             CCCC
T ss_pred             CccC
Confidence            6555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.37  E-value=5.9e-07  Score=82.19  Aligned_cols=72  Identities=24%  Similarity=0.286  Sum_probs=52.7

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCcc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNV  314 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i  314 (323)
                      +.+..|.++++|+.|++++|.+         ..+ |..++.++ +|++|++++|.+..+|..+ + +++|++|++++|.+
T Consensus        84 ~~~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l  153 (390)
T 3o6n_A           84 IDTYAFAYAHTIQKLYMGFNAI---------RYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL  153 (390)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cChhhccCCCCcCEEECCCCCC---------CcCCHHHhcCCC-CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc
Confidence            4445677777777777777766         333 45577787 8888888888888888775 5 88888888888887


Q ss_pred             ccccc
Q 036903          315 ELLWE  319 (323)
Q Consensus       315 ~~lP~  319 (323)
                      ..+|.
T Consensus       154 ~~~~~  158 (390)
T 3o6n_A          154 ERIED  158 (390)
T ss_dssp             CBCCT
T ss_pred             CccCh
Confidence            77654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.37  E-value=1.1e-06  Score=76.47  Aligned_cols=73  Identities=25%  Similarity=0.263  Sum_probs=49.1

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCcc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNV  314 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i  314 (323)
                      +.+..|.++++|++|++++|.+         ..+|. .++.++ +|++|++++|.+..+|... + +++|++|++++|.+
T Consensus       124 ~~~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          124 LPDGVFDKLTNLTYLNLAHNQL---------QSLPKGVFDKLT-NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cCHHHhccCCCCCEEECCCCcc---------CccCHHHhccCc-cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            3444566677777777777765         34443 356677 7777777777777777654 5 77777777777777


Q ss_pred             cccccc
Q 036903          315 ELLWEE  320 (323)
Q Consensus       315 ~~lP~~  320 (323)
                      +.+|.+
T Consensus       194 ~~~~~~  199 (272)
T 3rfs_A          194 KSVPDG  199 (272)
T ss_dssp             SCCCTT
T ss_pred             CccCHH
Confidence            766653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.37  E-value=7.4e-07  Score=86.25  Aligned_cols=68  Identities=16%  Similarity=0.083  Sum_probs=39.7

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCC-CCCC-CCCceEEEcCCCcc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLP-TNLI-TDKLVVLNLPCSNV  314 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP-~~i~-L~~L~~L~l~~~~i  314 (323)
                      +.+..|.++++|++|+|++|.+         ..+ |..++.++ +|++|++++|.+..+| ..++ +++|++|++++|.+
T Consensus        71 i~~~~~~~l~~L~~L~Ls~n~l---------~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  140 (606)
T 3vq2_A           71 IEDKAWHGLHHLSNLILTGNPI---------QSFSPGSFSGLT-SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI  140 (606)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCC---------CCCCTTSSTTCT-TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCC
T ss_pred             cCHHHhhchhhcCEeECCCCcc---------cccChhhcCCcc-cCCEEEccCCccccccccccCCCCCCCEEeCCCCcc
Confidence            3445566666666666666655         222 55566666 6666666666665555 3444 66666666666655


Q ss_pred             c
Q 036903          315 E  315 (323)
Q Consensus       315 ~  315 (323)
                      .
T Consensus       141 ~  141 (606)
T 3vq2_A          141 H  141 (606)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.36  E-value=1.1e-06  Score=76.22  Aligned_cols=87  Identities=23%  Similarity=0.247  Sum_probs=60.3

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCCCCC-C
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPTN-L  299 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~~-i  299 (323)
                      .++.+.+....+  ..+....|.++++|++|+++++.+         ..+|. .+..++ +|++|++++|.+..+|.. +
T Consensus        62 ~L~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~l---------~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~  129 (270)
T 2o6q_A           62 KLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKL---------QALPIGVFDQLV-NLAELRLDRNQLKSLPPRVF  129 (270)
T ss_dssp             TCCEEECCSSCC--SCCCTTTTSSCTTCCEEECCSSCC---------CCCCTTTTTTCS-SCCEEECCSSCCCCCCTTTT
T ss_pred             CCCEEECCCCcc--CeeChhhhcCCCCCCEEECCCCcC---------CcCCHhHccccc-CCCEEECCCCccCeeCHHHh
Confidence            444444443332  234455567777788888877766         34443 457777 888888888888888765 4


Q ss_pred             C-CCCceEEEcCCCcccccccc
Q 036903          300 I-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       300 ~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      + +++|++|++++|.++.+|.+
T Consensus       130 ~~l~~L~~L~Ls~n~l~~~~~~  151 (270)
T 2o6q_A          130 DSLTKLTYLSLGYNELQSLPKG  151 (270)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTT
T ss_pred             CcCcCCCEEECCCCcCCccCHh
Confidence            5 88888888888888888764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.36  E-value=1.1e-06  Score=74.08  Aligned_cols=83  Identities=16%  Similarity=0.205  Sum_probs=66.1

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC-CCCCC
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL-PTNLI  300 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L-P~~i~  300 (323)
                      .++.+.+..+.+  ..+.+..|.++++|+.|+|++|.+.        ...|..+..++ +|++|+|++|.+..+ |..+.
T Consensus        82 ~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~  150 (220)
T 2v70_A           82 GVNEILLTSNRL--ENVQHKMFKGLESLKTLMLRSNRIT--------CVGNDSFIGLS-SVRLLSLYDNQITTVAPGAFD  150 (220)
T ss_dssp             TCCEEECCSSCC--CCCCGGGGTTCSSCCEEECTTSCCC--------CBCTTSSTTCT-TCSEEECTTSCCCCBCTTTTT
T ss_pred             CCCEEECCCCcc--CccCHhHhcCCcCCCEEECCCCcCC--------eECHhHcCCCc-cCCEEECCCCcCCEECHHHhc
Confidence            455554444433  3456677999999999999999872        33477899999 999999999999998 66777


Q ss_pred             -CCCceEEEcCCCccc
Q 036903          301 -TDKLVVLNLPCSNVE  315 (323)
Q Consensus       301 -L~~L~~L~l~~~~i~  315 (323)
                       +++|++|++++|.+.
T Consensus       151 ~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          151 TLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TCTTCCEEECCSCCEE
T ss_pred             CCCCCCEEEecCcCCc
Confidence             999999999999764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.36  E-value=7.8e-07  Score=86.10  Aligned_cols=87  Identities=21%  Similarity=0.237  Sum_probs=71.3

Q ss_pred             ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCC-CCC
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTL-PTN  298 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~L-P~~  298 (323)
                      ..++.+.+....+  -.+.+..|.++++|++|++++|.+         ..+ |..++.++ +|++|+|++|.+..+ |..
T Consensus        32 ~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l---------~~i~~~~~~~l~-~L~~L~Ls~n~l~~~~p~~   99 (606)
T 3vq2_A           32 SSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEI---------ETIEDKAWHGLH-HLSNLILTGNPIQSFSPGS   99 (606)
T ss_dssp             TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCC---------CEECTTTTTTCT-TCCEEECTTCCCCCCCTTS
T ss_pred             CCcCEEECCCCCc--CEeChhhccCCccCcEEeCCCCcc---------cccCHHHhhchh-hcCEeECCCCcccccChhh
Confidence            3456655554433  345667899999999999999987         444 67899999 999999999999988 778


Q ss_pred             CC-CCCceEEEcCCCccccccc
Q 036903          299 LI-TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       299 i~-L~~L~~L~l~~~~i~~lP~  319 (323)
                      ++ +++|++|++++|.+..+|.
T Consensus       100 ~~~l~~L~~L~L~~n~l~~~~~  121 (606)
T 3vq2_A          100 FSGLTSLENLVAVETKLASLES  121 (606)
T ss_dssp             STTCTTCCEEECTTSCCCCSSS
T ss_pred             cCCcccCCEEEccCCccccccc
Confidence            87 9999999999999998883

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.35  E-value=8.8e-07  Score=72.94  Aligned_cols=83  Identities=16%  Similarity=0.212  Sum_probs=65.8

Q ss_pred             ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCC-CCC
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTL-PTN  298 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~L-P~~  298 (323)
                      ..++.+.+..+.+  ..+.+..|.++++|+.|+|++|.+         ..+ |..+..++ +|++|+|++|.+..+ |..
T Consensus        54 ~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l---------~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~  121 (192)
T 1w8a_A           54 PHLVKLELKRNQL--TGIEPNAFEGASHIQELQLGENKI---------KEISNKMFLGLH-QLKTLNLYDNQISCVMPGS  121 (192)
T ss_dssp             TTCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSCCC---------CEECSSSSTTCT-TCCEEECCSSCCCEECTTS
T ss_pred             CCCCEEECCCCCC--CCcCHhHcCCcccCCEEECCCCcC---------CccCHHHhcCCC-CCCEEECCCCcCCeeCHHH
Confidence            3456665554443  345567899999999999999988         444 45588999 999999999999977 667


Q ss_pred             CC-CCCceEEEcCCCccc
Q 036903          299 LI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       299 i~-L~~L~~L~l~~~~i~  315 (323)
                      +. +.+|++|++++|.+.
T Consensus       122 ~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          122 FEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             STTCTTCCEEECTTCCBC
T ss_pred             hhcCCCCCEEEeCCCCcc
Confidence            77 999999999999764

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.34  E-value=1.4e-06  Score=71.77  Aligned_cols=82  Identities=23%  Similarity=0.292  Sum_probs=66.6

Q ss_pred             ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCCC-
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTN-  298 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~~-  298 (323)
                      ..++.+.+..+.+  ..+.+..|.++++|+.|+|++|.+         ..+ |..+..++ +|++|+|++|.+..+|.. 
T Consensus        54 ~~L~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~l---------~~i~~~~f~~l~-~L~~L~L~~N~l~~~~~~~  121 (193)
T 2wfh_A           54 KHLTLIDLSNNRI--STLSNQSFSNMTQLLTLILSYNRL---------RCIPPRTFDGLK-SLRLLSLHGNDISVVPEGA  121 (193)
T ss_dssp             TTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCC---------CBCCTTTTTTCT-TCCEEECCSSCCCBCCTTT
T ss_pred             cCCCEEECCCCcC--CEeCHhHccCCCCCCEEECCCCcc---------CEeCHHHhCCCC-CCCEEECCCCCCCeeChhh
Confidence            3556665554443  345667899999999999999987         444 45699999 999999999999999986 


Q ss_pred             CC-CCCceEEEcCCCcc
Q 036903          299 LI-TDKLVVLNLPCSNV  314 (323)
Q Consensus       299 i~-L~~L~~L~l~~~~i  314 (323)
                      +. +.+|++|++.+|.+
T Consensus       122 ~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A          122 FNDLSALSHLAIGANPL  138 (193)
T ss_dssp             TTTCTTCCEEECCSSCE
T ss_pred             hhcCccccEEEeCCCCe
Confidence            56 99999999999865

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.34  E-value=5.3e-07  Score=81.18  Aligned_cols=82  Identities=17%  Similarity=0.239  Sum_probs=54.1

Q ss_pred             eeEEEEeec-CCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCCCC
Q 036903          222 VIAGIFLDL-SKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTNL  299 (323)
Q Consensus       222 ~~~~l~~~~-~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~~i  299 (323)
                      .++.+.+.. +.+  -.+.+..|.++++|+.|+|++|.+         ..+ |..+..|+ +|++|+|++|.+..+|..+
T Consensus        32 ~L~~L~l~~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l---------~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~   99 (347)
T 2ifg_A           32 NLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGL---------RFVAPDAFHFTP-RLSRLNLSFNALESLSWKT   99 (347)
T ss_dssp             CCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCC---------CEECTTGGGSCS-CCCEEECCSSCCSCCCSTT
T ss_pred             CeeEEEccCCCCC--CCcChhHhccccCCCEEECCCCcc---------ceeCHHHhcCCc-CCCEEeCCCCccceeCHHH
Confidence            455554442 332  334556677888888888888776         333 44567777 8888888888888887765


Q ss_pred             -CCCCceEEEcCCCccc
Q 036903          300 -ITDKLVVLNLPCSNVE  315 (323)
Q Consensus       300 -~L~~L~~L~l~~~~i~  315 (323)
                       ....|+.|+|.+|.+.
T Consensus       100 ~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A          100 VQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             TCSCCCCEEECCSSCCC
T ss_pred             cccCCceEEEeeCCCcc
Confidence             3333888888777654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.33  E-value=8.2e-07  Score=85.36  Aligned_cols=86  Identities=17%  Similarity=0.168  Sum_probs=62.6

Q ss_pred             ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI  300 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~  300 (323)
                      ..++.+.+..+.+  ..+.+..|.++++|++|+|++|.+.        ...|+.+..++ +|++|+|++|.+..+|.. .
T Consensus        52 ~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~  119 (562)
T 3a79_B           52 PRTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIR--------SLDFHVFLFNQ-DLEYLDVSHNRLQNISCC-P  119 (562)
T ss_dssp             TTCCEEECCSSCC--CCCCGGGTTTCTTCCEEECCSCCCC--------EECTTTTTTCT-TCCEEECTTSCCCEECSC-C
T ss_pred             CCcCEEECCCCCc--cccChhhhccCCCccEEECCCCCCC--------cCCHHHhCCCC-CCCEEECCCCcCCccCcc-c
Confidence            3455555544433  3345567888888888888888761        23366788888 888888888888888887 7


Q ss_pred             CCCceEEEcCCCcccccc
Q 036903          301 TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       301 L~~L~~L~l~~~~i~~lP  318 (323)
                      +.+|++|++++|.++.+|
T Consensus       120 l~~L~~L~Ls~N~l~~l~  137 (562)
T 3a79_B          120 MASLRHLDLSFNDFDVLP  137 (562)
T ss_dssp             CTTCSEEECCSSCCSBCC
T ss_pred             cccCCEEECCCCCccccC
Confidence            888888888888887765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.32  E-value=9.7e-07  Score=80.10  Aligned_cols=90  Identities=19%  Similarity=0.181  Sum_probs=71.7

Q ss_pred             cceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCC-CC
Q 036903          220 TDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTL-PT  297 (323)
Q Consensus       220 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~L-P~  297 (323)
                      ...++.+.+..+.+  -.+.+..|.++++|+.|+|++|.+         ..+|. .+..++ +|++|+|++|.+..+ |.
T Consensus        63 l~~L~~L~L~~N~i--~~i~~~~~~~l~~L~~L~Ls~N~l---------~~~~~~~~~~l~-~L~~L~L~~N~i~~~~~~  130 (361)
T 2xot_A           63 LTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSSNHL---------HTLDEFLFSDLQ-ALEVLLLYNNHIVVVDRN  130 (361)
T ss_dssp             CTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCC---------CEECTTTTTTCT-TCCEEECCSSCCCEECTT
T ss_pred             ccccCEEECCCCcC--CccChhhccCCCCCCEEECCCCcC---------CcCCHHHhCCCc-CCCEEECCCCcccEECHH
Confidence            34555655544433  345567899999999999999987         45544 688999 999999999999988 55


Q ss_pred             CCC-CCCceEEEcCCCccccccccc
Q 036903          298 NLI-TDKLVVLNLPCSNVELLWEEK  321 (323)
Q Consensus       298 ~i~-L~~L~~L~l~~~~i~~lP~~i  321 (323)
                      .+. +.+|++|+|++|.++.+|.++
T Consensus       131 ~~~~l~~L~~L~L~~N~l~~l~~~~  155 (361)
T 2xot_A          131 AFEDMAQLQKLYLSQNQISRFPVEL  155 (361)
T ss_dssp             TTTTCTTCCEEECCSSCCCSCCGGG
T ss_pred             HhCCcccCCEEECCCCcCCeeCHHH
Confidence            677 999999999999999998764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.31  E-value=3.3e-07  Score=81.54  Aligned_cols=74  Identities=12%  Similarity=0.178  Sum_probs=52.0

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC-CCCCCCC-CC-CceEEEcCCCcc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR-TLPTNLI-TD-KLVVLNLPCSNV  314 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~-~LP~~i~-L~-~L~~L~l~~~~i  314 (323)
                      ..+..|.++++|++|++++|.+        ...+|..+..++ +|++|++++|.+. .+|..++ +. +|++|++++|.+
T Consensus       116 ~~p~~~~~l~~L~~L~Ls~N~l--------~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          116 AIPDFLSQIKTLVTLDFSYNAL--------SGTLPPSISSLP-NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ECCGGGGGCTTCCEEECCSSEE--------ESCCCGGGGGCT-TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             cCCHHHhCCCCCCEEeCCCCcc--------CCcCChHHhcCC-CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence            3455677777777777777765        125677777777 7777777777776 7777775 66 777777777776


Q ss_pred             c-ccccc
Q 036903          315 E-LLWEE  320 (323)
Q Consensus       315 ~-~lP~~  320 (323)
                      . .+|..
T Consensus       187 ~~~~~~~  193 (313)
T 1ogq_A          187 TGKIPPT  193 (313)
T ss_dssp             EEECCGG
T ss_pred             eccCChH
Confidence            6 55554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.31  E-value=1.2e-06  Score=70.94  Aligned_cols=85  Identities=20%  Similarity=0.258  Sum_probs=67.8

Q ss_pred             ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCCC
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTNL  299 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~i  299 (323)
                      ..++.+.+..+.+  ..+.+..|..+++|+.|++++|.+         ..+|.. +..++ +|++|++++|.+..+|..+
T Consensus        52 ~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l---------~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~  119 (177)
T 2o6r_A           52 TQLTKLSLSQNQI--QSLPDGVFDKLTKLTILYLHENKL---------QSLPNGVFDKLT-QLKELALDTNQLKSVPDGI  119 (177)
T ss_dssp             TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCSCCCTTT
T ss_pred             ccccEEECCCCcc--eEeChhHccCCCccCEEECCCCCc---------cccCHHHhhCCc-ccCEEECcCCcceEeCHHH
Confidence            4566665554443  245566789999999999999987         455554 68899 9999999999999999985


Q ss_pred             -C-CCCceEEEcCCCccccc
Q 036903          300 -I-TDKLVVLNLPCSNVELL  317 (323)
Q Consensus       300 -~-L~~L~~L~l~~~~i~~l  317 (323)
                       . +++|++|++++|.+.--
T Consensus       120 ~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A          120 FDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             TTTCTTCCEEECCSSCBCCC
T ss_pred             hcCCcccCEEEecCCCeecc
Confidence             6 99999999999986543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.31  E-value=1.3e-06  Score=81.60  Aligned_cols=73  Identities=19%  Similarity=0.195  Sum_probs=46.0

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCccc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~  315 (323)
                      +.+..|.++++|+.|+|++|.+.        ...|..+..++ +|++|+|++|.+..+|.. ++ +.+|++|+|++|.++
T Consensus        90 ~~~~~~~~l~~L~~L~Ls~n~i~--------~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  160 (452)
T 3zyi_A           90 IQADTFRHLHHLEVLQLGRNSIR--------QIEVGAFNGLA-SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE  160 (452)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCC--------EECTTTTTTCT-TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred             ECHHHcCCCCCCCEEECCCCccC--------CcChhhccCcc-cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc
Confidence            44556667777777777776651        22335566666 677777776666666655 44 667777777666666


Q ss_pred             cccc
Q 036903          316 LLWE  319 (323)
Q Consensus       316 ~lP~  319 (323)
                      .+|.
T Consensus       161 ~~~~  164 (452)
T 3zyi_A          161 SIPS  164 (452)
T ss_dssp             EECT
T ss_pred             eeCH
Confidence            6654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.31  E-value=6.2e-07  Score=85.20  Aligned_cols=67  Identities=18%  Similarity=0.182  Sum_probs=35.1

Q ss_pred             chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCceEEEcCCCcccc
Q 036903          240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVEL  316 (323)
Q Consensus       240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~  316 (323)
                      +..|.++++|++|+|++|.+.        ...|..++.++ +|++|+|++|.++.+|.. .+.+|++|++++|.++.
T Consensus        38 ~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~N~l~~  104 (520)
T 2z7x_B           38 TSDILSLSKLRILIISHNRIQ--------YLDISVFKFNQ-ELEYLDLSHNKLVKISCH-PTVNLKHLDLSFNAFDA  104 (520)
T ss_dssp             HHHHTTCTTCCEEECCSSCCC--------EEEGGGGTTCT-TCCEEECCSSCCCEEECC-CCCCCSEEECCSSCCSS
T ss_pred             hhhccccccccEEecCCCccC--------CcChHHhhccc-CCCEEecCCCceeecCcc-ccCCccEEeccCCcccc
Confidence            344555555555555555541        12244555555 555555555555555555 55555555555555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.30  E-value=2e-06  Score=74.70  Aligned_cols=68  Identities=22%  Similarity=0.250  Sum_probs=41.8

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNV  314 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i  314 (323)
                      +.+..|.++++|+.|++++|.+         ..+|. .++.++ +|++|++++|.+..+|.. ++ +++|++|++++|.+
T Consensus       148 ~~~~~~~~l~~L~~L~l~~n~l---------~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          148 LPKGVFDKLTNLTELDLSYNQL---------QSLPEGVFDKLT-QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCHHHhccCccCCEEECCCCCc---------CccCHHHhcCCc-cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence            3444566667777777776665         33333 346666 777777777766666655 34 67777777766654


Q ss_pred             c
Q 036903          315 E  315 (323)
Q Consensus       315 ~  315 (323)
                      .
T Consensus       218 ~  218 (272)
T 3rfs_A          218 D  218 (272)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.29  E-value=2.1e-06  Score=78.56  Aligned_cols=71  Identities=23%  Similarity=0.289  Sum_probs=46.6

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNV  314 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i  314 (323)
                      +.+..|.++++|+.|++++|.+         ..+|.. ++.++ +|++|++++|.+..+|.. ++ +++|++|++++|.+
T Consensus       108 ~~~~~~~~l~~L~~L~L~~n~l---------~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  177 (390)
T 3o6n_A          108 LPPHVFQNVPLLTVLVLERNDL---------SSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL  177 (390)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred             CCHHHhcCCCCCCEEECCCCcc---------CcCCHHHhcCCC-CCcEEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence            3445566777777777777765         455555 36666 777777777777666543 55 77777777777766


Q ss_pred             cccc
Q 036903          315 ELLW  318 (323)
Q Consensus       315 ~~lP  318 (323)
                      +.+|
T Consensus       178 ~~~~  181 (390)
T 3o6n_A          178 THVD  181 (390)
T ss_dssp             SBCC
T ss_pred             Cccc
Confidence            6554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.29  E-value=8.3e-07  Score=80.13  Aligned_cols=68  Identities=22%  Similarity=0.321  Sum_probs=35.6

Q ss_pred             chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCC--CCC-CCCceEEEcCCC-cc
Q 036903          240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPT--NLI-TDKLVVLNLPCS-NV  314 (323)
Q Consensus       240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~--~i~-L~~L~~L~l~~~-~i  314 (323)
                      +..|.++++|++|++++|.+         ..+|.. ++.++ +|++|++++|.+..+|.  .++ +++|++|++++| .+
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l---------~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~  162 (353)
T 2z80_A           93 EDSFSSLGSLEHLDLSYNYL---------SNLSSSWFKPLS-SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF  162 (353)
T ss_dssp             TTTTTTCTTCCEEECCSSCC---------SSCCHHHHTTCT-TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred             HhhcCCCCCCCEEECCCCcC---------CcCCHhHhCCCc-cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc
Confidence            34455555555555555544         334333 45555 55555555555555555  344 555666655555 34


Q ss_pred             ccc
Q 036903          315 ELL  317 (323)
Q Consensus       315 ~~l  317 (323)
                      ..+
T Consensus       163 ~~~  165 (353)
T 2z80_A          163 TKI  165 (353)
T ss_dssp             CEE
T ss_pred             ccc
Confidence            444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.29  E-value=1.4e-06  Score=77.84  Aligned_cols=63  Identities=19%  Similarity=0.313  Sum_probs=30.7

Q ss_pred             hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCccc
Q 036903          241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~  315 (323)
                      ..|.++++|+.|++++|.+         ..+|..+.  + +|++|++++|.+..+|.. ++ +++|++|++++|.++
T Consensus        96 ~~~~~l~~L~~L~L~~n~l---------~~l~~~~~--~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A           96 KAFSPLRKLQKLYISKNHL---------VEIPPNLP--S-SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             GGSTTCTTCCEEECCSSCC---------CSCCSSCC--T-TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             hHhhCcCCCCEEECCCCcC---------CccCcccc--c-cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            3444444444444444443         33444433  3 555555555555555443 33 555555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.29  E-value=1.2e-06  Score=84.81  Aligned_cols=72  Identities=24%  Similarity=0.286  Sum_probs=53.3

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCcc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNV  314 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i  314 (323)
                      +.+..|..+++|++|+|++|.+         ..+ |..++.++ +|++|+|++|.+..+|..+ + +.+|++|++++|.+
T Consensus        90 ~~~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l  159 (597)
T 3oja_B           90 IDTYAFAYAHTIQKLYMGFNAI---------RYLPPHVFQNVP-LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL  159 (597)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CChHHhcCCCCCCEEECCCCcC---------CCCCHHHHcCCC-CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence            4445677777788888877776         334 34567888 8888888888888888775 5 88888888888887


Q ss_pred             ccccc
Q 036903          315 ELLWE  319 (323)
Q Consensus       315 ~~lP~  319 (323)
                      ..+|.
T Consensus       160 ~~~~~  164 (597)
T 3oja_B          160 ERIED  164 (597)
T ss_dssp             CBCCT
T ss_pred             CCCCh
Confidence            77664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.28  E-value=7.2e-07  Score=79.82  Aligned_cols=71  Identities=21%  Similarity=0.233  Sum_probs=51.5

Q ss_pred             CchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccc
Q 036903          239 GSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVEL  316 (323)
Q Consensus       239 ~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~  316 (323)
                      ....|.++++|+.|++++|.+         ..+ |..+..++ +|++|++++|.+..+|..+. +++|++|++++|.++.
T Consensus       209 ~~~~l~~l~~L~~L~L~~N~l---------~~~~~~~~~~l~-~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          209 ELEDLLRYSKLYRLGLGHNQI---------RMIENGSLSFLP-TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITK  278 (332)
T ss_dssp             CTTSSTTCTTCSCCBCCSSCC---------CCCCTTGGGGCT-TCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCB
T ss_pred             CHHHhcCCCCCCEEECCCCcC---------CcCChhHhhCCC-CCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCc
Confidence            345667777788888877766         333 34577777 78888888877778887776 7888888888887777


Q ss_pred             ccc
Q 036903          317 LWE  319 (323)
Q Consensus       317 lP~  319 (323)
                      +|.
T Consensus       279 ~~~  281 (332)
T 2ft3_A          279 VGV  281 (332)
T ss_dssp             CCT
T ss_pred             cCh
Confidence            765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.28  E-value=2.3e-06  Score=74.69  Aligned_cols=87  Identities=17%  Similarity=0.159  Sum_probs=61.7

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCC-CCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCC-CC
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPN-RRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLP-TN  298 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~-~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP-~~  298 (323)
                      .++.+.+....+  ..+.+..|.++++|+.|++++|. +         ..+ |..+..++ +|++|++++|.+..+| ..
T Consensus        57 ~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~~l---------~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~  124 (285)
T 1ozn_A           57 NLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQL---------RSVDPATFHGLG-RLHTLHLDRCGLQELGPGL  124 (285)
T ss_dssp             TCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSCTTC---------CCCCTTTTTTCT-TCCEEECTTSCCCCCCTTT
T ss_pred             CCCEEECCCCcc--ceeCHhhcCCccCCCEEeCCCCCCc---------cccCHHHhcCCc-CCCEEECCCCcCCEECHhH
Confidence            444444443322  23445667788888888888876 4         334 66788888 8999999988888774 44


Q ss_pred             CC-CCCceEEEcCCCcccccccc
Q 036903          299 LI-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       299 i~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      ++ +++|++|++++|.++.+|.+
T Consensus       125 ~~~l~~L~~L~l~~n~l~~~~~~  147 (285)
T 1ozn_A          125 FRGLAALQYLYLQDNALQALPDD  147 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTT
T ss_pred             hhCCcCCCEEECCCCcccccCHh
Confidence            66 88999999999888887754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.27  E-value=2.5e-06  Score=74.49  Aligned_cols=90  Identities=17%  Similarity=0.130  Sum_probs=69.7

Q ss_pred             ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-C
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN-L  299 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~-i  299 (323)
                      ..++.+.+..+.. ...+.+..|.++++|+.|++++|.+.        ...|..+..++ +|++|++++|.+..+|.. +
T Consensus        80 ~~L~~L~l~~n~~-l~~~~~~~~~~l~~L~~L~l~~n~l~--------~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~  149 (285)
T 1ozn_A           80 ALLEQLDLSDNAQ-LRSVDPATFHGLGRLHTLHLDRCGLQ--------ELGPGLFRGLA-ALQYLYLQDNALQALPDDTF  149 (285)
T ss_dssp             TTCCEEECCSCTT-CCCCCTTTTTTCTTCCEEECTTSCCC--------CCCTTTTTTCT-TCCEEECCSSCCCCCCTTTT
T ss_pred             cCCCEEeCCCCCC-ccccCHHHhcCCcCCCEEECCCCcCC--------EECHhHhhCCc-CCCEEECCCCcccccCHhHh
Confidence            4456655543320 23344677899999999999999872        23366788899 999999999999999876 6


Q ss_pred             C-CCCceEEEcCCCcccccccc
Q 036903          300 I-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       300 ~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      + +++|++|++++|.++.+|.+
T Consensus       150 ~~l~~L~~L~l~~n~l~~~~~~  171 (285)
T 1ozn_A          150 RDLGNLTHLFLHGNRISSVPER  171 (285)
T ss_dssp             TTCTTCCEEECCSSCCCEECTT
T ss_pred             ccCCCccEEECCCCcccccCHH
Confidence            6 99999999999999988864

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.27  E-value=1.4e-06  Score=84.42  Aligned_cols=72  Identities=22%  Similarity=0.283  Sum_probs=43.0

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNV  314 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i  314 (323)
                      +.+.+|.++++|++|+|++|.+         ..+|. .+..|+ +|++|+|++|+++.+|.. ++ |.+|++|++++|++
T Consensus        67 l~~~~f~~l~~L~~L~Ls~N~i---------~~i~~~~f~~L~-~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l  136 (635)
T 4g8a_A           67 LGSYSFFSFPELQVLDLSRCEI---------QTIEDGAYQSLS-HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL  136 (635)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCC---------CEECTTTTTTCT-TCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC
T ss_pred             CCHHHHhCCCCCCEEECCCCcC---------CCcChhHhcCCC-CCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC
Confidence            4455566666666666666655         33433 456666 666666666666666654 34 66666666666666


Q ss_pred             ccccc
Q 036903          315 ELLWE  319 (323)
Q Consensus       315 ~~lP~  319 (323)
                      +.+|.
T Consensus       137 ~~l~~  141 (635)
T 4g8a_A          137 ASLEN  141 (635)
T ss_dssp             CCSTT
T ss_pred             CCCCh
Confidence            66654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.26  E-value=1.5e-06  Score=75.61  Aligned_cols=69  Identities=20%  Similarity=0.286  Sum_probs=42.1

Q ss_pred             chhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCC--CCCCCC-CCCceEEEcCCCccc
Q 036903          240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRT--LPTNLI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~--LP~~i~-L~~L~~L~l~~~~i~  315 (323)
                      ...|.++++|+.|+++++.+         ..++. .++.++ +|++|++++|.+..  +|..++ +++|++|++++|.++
T Consensus        93 ~~~~~~l~~L~~L~l~~n~l---------~~~~~~~~~~l~-~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~  162 (276)
T 2z62_A           93 LGAFSGLSSLQKLVAVETNL---------ASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  162 (276)
T ss_dssp             TTTTTTCTTCCEEECTTSCC---------CCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             hhhhcCCccccEEECCCCCc---------cccCchhcccCC-CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence            34455556666666655554         23332 466666 77777777776665  566665 777777777777666


Q ss_pred             ccc
Q 036903          316 LLW  318 (323)
Q Consensus       316 ~lP  318 (323)
                      .+|
T Consensus       163 ~~~  165 (276)
T 2z62_A          163 SIY  165 (276)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.24  E-value=2.7e-06  Score=73.89  Aligned_cols=88  Identities=17%  Similarity=0.078  Sum_probs=63.4

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCC-CCC
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPT-NLI  300 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~-~i~  300 (323)
                      .++.+.+..+.+  ..+....|.++++|+.|++++|.+.        ...|..+..++ +|++|++++|.+..+|. .++
T Consensus        53 ~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~--------~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~  121 (276)
T 2z62_A           53 ELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQ--------SLALGAFSGLS-SLQKLVAVETNLASLENFPIG  121 (276)
T ss_dssp             TCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCC--------EECTTTTTTCT-TCCEEECTTSCCCCSTTCCCT
T ss_pred             CCcEEECCCCcC--CccCHHHccCCcCCCEEECCCCccC--------ccChhhhcCCc-cccEEECCCCCccccCchhcc
Confidence            445554443332  2345567788888888888888761        23346788888 99999999998888877 466


Q ss_pred             -CCCceEEEcCCCcccc--cccc
Q 036903          301 -TDKLVVLNLPCSNVEL--LWEE  320 (323)
Q Consensus       301 -L~~L~~L~l~~~~i~~--lP~~  320 (323)
                       +++|++|++++|.++.  +|+.
T Consensus       122 ~l~~L~~L~l~~n~l~~~~l~~~  144 (276)
T 2z62_A          122 HLKTLKELNVAHNLIQSFKLPEY  144 (276)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGG
T ss_pred             cCCCCCEEECcCCccceecCchh
Confidence             9999999999998876  5654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.24  E-value=2e-06  Score=80.13  Aligned_cols=70  Identities=20%  Similarity=0.275  Sum_probs=34.5

Q ss_pred             chhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcccc
Q 036903          240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVEL  316 (323)
Q Consensus       240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~~  316 (323)
                      ...|.++++|+.|+|++|.+         ..+ +..+..++ +|++|+|++|.+..+|.. +. +.+|++|++++|.++.
T Consensus        81 ~~~~~~l~~L~~L~Ls~n~i---------~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~  150 (440)
T 3zyj_A           81 VNSFKHLRHLEILQLSRNHI---------RTIEIGAFNGLA-NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES  150 (440)
T ss_dssp             TTTTSSCSSCCEEECCSSCC---------CEECGGGGTTCS-SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE
T ss_pred             HHHhhCCCCCCEEECCCCcC---------CccChhhccCCc-cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc
Confidence            34455555555555555544         222 23444455 555555555555555442 33 5555555555555544


Q ss_pred             ccc
Q 036903          317 LWE  319 (323)
Q Consensus       317 lP~  319 (323)
                      +|.
T Consensus       151 ~~~  153 (440)
T 3zyj_A          151 IPS  153 (440)
T ss_dssp             ECT
T ss_pred             cCH
Confidence            443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.23  E-value=2.3e-06  Score=80.39  Aligned_cols=72  Identities=17%  Similarity=0.225  Sum_probs=43.8

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCccc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~  315 (323)
                      +.+..|.++++|++|+|++|.+.        ...|..++.++ +|++|+|++|.+..+|.. ++ +.+|++|++++|.+.
T Consensus        47 ~~~~~~~~l~~L~~L~L~~n~i~--------~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~  117 (477)
T 2id5_A           47 LNQDEFASFPHLEELELNENIVS--------AVEPGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV  117 (477)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCC--------EECTTTTTTCT-TCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCC
T ss_pred             ECHhHccCCCCCCEEECCCCccC--------EeChhhhhCCc-cCCEEECCCCcCCccCcccccCCCCCCEEECCCCccc
Confidence            34455666667777777666551        22355666666 666666666666666654 34 666666666666655


Q ss_pred             ccc
Q 036903          316 LLW  318 (323)
Q Consensus       316 ~lP  318 (323)
                      .++
T Consensus       118 ~~~  120 (477)
T 2id5_A          118 ILL  120 (477)
T ss_dssp             EEC
T ss_pred             cCC
Confidence            543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.23  E-value=3e-06  Score=75.65  Aligned_cols=72  Identities=18%  Similarity=0.196  Sum_probs=48.6

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCceEEEcCCCccccc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELL  317 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~l  317 (323)
                      +....|.++++|++|++++|.+.        ...|..++.++ +|++|++++|.++.+|..+. ++|++|++++|.+..+
T Consensus        67 ~~~~~~~~l~~L~~L~L~~n~l~--------~~~~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n~l~~~  136 (330)
T 1xku_A           67 IKDGDFKNLKNLHTLILINNKIS--------KISPGAFAPLV-KLERLYLSKNQLKELPEKMP-KTLQELRVHENEITKV  136 (330)
T ss_dssp             BCTTTTTTCTTCCEEECCSSCCC--------CBCTTTTTTCT-TCCEEECCSSCCSBCCSSCC-TTCCEEECCSSCCCBB
T ss_pred             eChhhhccCCCCCEEECCCCcCC--------eeCHHHhcCCC-CCCEEECCCCcCCccChhhc-ccccEEECCCCccccc
Confidence            44556777788888888777761        22366777777 78888887777777776654 5666666666666555


Q ss_pred             cc
Q 036903          318 WE  319 (323)
Q Consensus       318 P~  319 (323)
                      |.
T Consensus       137 ~~  138 (330)
T 1xku_A          137 RK  138 (330)
T ss_dssp             CH
T ss_pred             CH
Confidence            43

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.22  E-value=7e-07  Score=73.75  Aligned_cols=43  Identities=16%  Similarity=0.198  Sum_probs=19.2

Q ss_pred             CCccCcCCCceeEEecCCC-CCCCCCCCC-CCCceEEEcCCCccccc
Q 036903          273 QGLDYLPEELTYLHWHGYP-LRTLPTNLI-TDKLVVLNLPCSNVELL  317 (323)
Q Consensus       273 ~~i~~L~~~Lr~L~l~~~~-i~~LP~~i~-L~~L~~L~l~~~~i~~l  317 (323)
                      ..+..++ +|++|++++|. +..+| .+. +++|++|++++|.++.+
T Consensus       130 ~~l~~l~-~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~  174 (197)
T 4ezg_A          130 TKINTLP-KVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY  174 (197)
T ss_dssp             HHHTTCS-SCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC
T ss_pred             HHHhhCC-CCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh
Confidence            3344444 44444444443 44444 233 44444444444444433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.22  E-value=2.4e-06  Score=81.86  Aligned_cols=42  Identities=19%  Similarity=0.285  Sum_probs=20.4

Q ss_pred             ccCcCCCceeEEecCCCCCC--CCCCCC-CCCceEEEcCCCccccc
Q 036903          275 LDYLPEELTYLHWHGYPLRT--LPTNLI-TDKLVVLNLPCSNVELL  317 (323)
Q Consensus       275 i~~L~~~Lr~L~l~~~~i~~--LP~~i~-L~~L~~L~l~~~~i~~l  317 (323)
                      ++.++ +|++|++++|.+..  +|..++ +++|++|++++|.+..+
T Consensus       120 ~~~l~-~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A          120 IGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             CTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred             ccccc-cccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence            44444 55555555554443  344444 55555555555544443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.22  E-value=3.1e-06  Score=82.03  Aligned_cols=85  Identities=21%  Similarity=0.296  Sum_probs=58.8

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCCCCCCC-CC
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPLRTLPT-NL  299 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i~~LP~-~i  299 (323)
                      .++.+.+..+.+  ..+.+..|.++++|++|+|++|.+         ..+|.. ++.++ +|++|+|++|.+..+|. .+
T Consensus       100 ~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l---------~~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~  167 (597)
T 3oja_B          100 TIQKLYMGFNAI--RYLPPHVFQNVPLLTVLVLERNDL---------SSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTF  167 (597)
T ss_dssp             TCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTT
T ss_pred             CCCEEECCCCcC--CCCCHHHHcCCCCCCEEEeeCCCC---------CCCCHHHhccCC-CCCEEEeeCCcCCCCChhhh
Confidence            444544443332  234556677888888888888876         466665 47777 88888888888877765 46


Q ss_pred             C-CCCceEEEcCCCcccccc
Q 036903          300 I-TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       300 ~-L~~L~~L~l~~~~i~~lP  318 (323)
                      + +++|++|++++|.+..+|
T Consensus       168 ~~l~~L~~L~L~~N~l~~~~  187 (597)
T 3oja_B          168 QATTSLQNLQLSSNRLTHVD  187 (597)
T ss_dssp             TTCTTCCEEECTTSCCSBCC
T ss_pred             hcCCcCcEEECcCCCCCCcC
Confidence            6 888888888888777665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.21  E-value=2e-06  Score=80.16  Aligned_cols=65  Identities=26%  Similarity=0.313  Sum_probs=31.2

Q ss_pred             hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCcc
Q 036903          241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNV  314 (323)
Q Consensus       241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i  314 (323)
                      ..|.++++|++|++++|.+.        ...|..+..++ +|++|++++|.++.+|..+ + +++|++|++++|.+
T Consensus       341 ~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          341 RMFENLDKLEVLDLSYNHIR--------ALGDQSFLGLP-NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             GGGTTCTTCCEEECCSSCCC--------EECTTTTTTCT-TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             hHhcCcccCCEEECCCCccc--------ccChhhccccc-cccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence            33444444444444444431        12244455555 5555555555555555433 3 55555555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.18  E-value=2.8e-06  Score=81.45  Aligned_cols=88  Identities=18%  Similarity=0.084  Sum_probs=62.5

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCC-CC
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPT-NL  299 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~-~i  299 (323)
                      .++.+.+..+.+  ..+.+..|.++++|++|++++|.+         ..+ |..++.++ +|++|++++|.+..+|. .+
T Consensus        53 ~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l---------~~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~  120 (570)
T 2z63_A           53 ELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPI---------QSLALGAFSGLS-SLQKLVAVETNLASLENFPI  120 (570)
T ss_dssp             SCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCC---------CEECTTTTTTCT-TCCEEECTTSCCCCSTTCSC
T ss_pred             CceEEECCCCcC--CccCcccccCchhCCEEeCcCCcC---------CccCHhhhcCcc-ccccccccccccccCCCccc
Confidence            444444433322  234556677888888888888776         344 46788888 88899998888888887 46


Q ss_pred             C-CCCceEEEcCCCcccc--ccccc
Q 036903          300 I-TDKLVVLNLPCSNVEL--LWEEK  321 (323)
Q Consensus       300 ~-L~~L~~L~l~~~~i~~--lP~~i  321 (323)
                      + +++|++|++++|.++.  +|+++
T Consensus       121 ~~l~~L~~L~L~~n~l~~~~lp~~~  145 (570)
T 2z63_A          121 GHLKTLKELNVAHNLIQSFKLPEYF  145 (570)
T ss_dssp             TTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred             cccccccEEecCCCccceecChhhh
Confidence            6 8899999999888875  57654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.17  E-value=3e-06  Score=82.75  Aligned_cols=68  Identities=12%  Similarity=0.093  Sum_probs=54.7

Q ss_pred             hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecC------CC-CCCCCCCCC-CCCceEEEcCCCccc
Q 036903          244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHG------YP-LRTLPTNLI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       244 ~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~------~~-i~~LP~~i~-L~~L~~L~l~~~~i~  315 (323)
                      ..+++|+.|+|++|.+         ..+|..+..++ +|++|+|++      |. ...+|..++ +++|++|++++|.+.
T Consensus       510 ~~l~~L~~L~Ls~N~l---------~~ip~~~~~l~-~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  579 (636)
T 4eco_A          510 TTLPYLVGIDLSYNSF---------SKFPTQPLNSS-TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR  579 (636)
T ss_dssp             TTCTTCCEEECCSSCC---------SSCCCGGGGCS-SCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred             ccCCCcCEEECCCCCC---------CCcChhhhcCC-CCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC
Confidence            3888888888888877         45888888888 899998854      43 457888887 889999999999888


Q ss_pred             cccccc
Q 036903          316 LLWEEK  321 (323)
Q Consensus       316 ~lP~~i  321 (323)
                      .+|..+
T Consensus       580 ~ip~~~  585 (636)
T 4eco_A          580 KVNEKI  585 (636)
T ss_dssp             BCCSCC
T ss_pred             ccCHhH
Confidence            888754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.17  E-value=1.9e-06  Score=76.65  Aligned_cols=65  Identities=11%  Similarity=0.111  Sum_probs=31.3

Q ss_pred             hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccccc
Q 036903          244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       244 ~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~  319 (323)
                      ..+++|++|++++|.+         ..+|... .++ +|++|++++|.+..+|..+. +++|++|++++|.++.+|.
T Consensus       166 ~~l~~L~~L~L~~N~l---------~~~~~~~-~l~-~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~  231 (317)
T 3o53_A          166 ASSDTLEHLNLQYNFI---------YDVKGQV-VFA-KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK  231 (317)
T ss_dssp             GGTTTCCEEECTTSCC---------CEEECCC-CCT-TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred             hccCcCCEEECCCCcC---------ccccccc-ccc-cCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhh
Confidence            3455555555555554         2222222 244 55555555555555544444 5555555555555544444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.17  E-value=2.5e-06  Score=75.23  Aligned_cols=69  Identities=17%  Similarity=0.183  Sum_probs=47.3

Q ss_pred             chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCC-CCC-CCCceEEEcCCCccccc
Q 036903          240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPT-NLI-TDKLVVLNLPCSNVELL  317 (323)
Q Consensus       240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~-~i~-L~~L~~L~l~~~~i~~l  317 (323)
                      +..|..+++|+.|++++|.+.        ...|..+..++ +|++|++++|.+..+|. .+. +.+|++|++++|.+...
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  238 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQLE--------QLSPTAFNSLS-SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS  238 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSCCC--------EECTTTTTTCT-TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred             hhHHhhCcCCCEEECCCCCcC--------CcCHHHhcCCC-CCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence            445667777777777777651        22356677777 77777777777777766 345 77777888877776554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.15  E-value=2.2e-06  Score=72.80  Aligned_cols=69  Identities=13%  Similarity=0.141  Sum_probs=34.9

Q ss_pred             chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCce---eEEecCC-CCCCCCCC-CC-CCCce-EEEcCCC
Q 036903          240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELT---YLHWHGY-PLRTLPTN-LI-TDKLV-VLNLPCS  312 (323)
Q Consensus       240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr---~L~l~~~-~i~~LP~~-i~-L~~L~-~L~l~~~  312 (323)
                      ...|.++++|+.|++++|.+         ..+|. +..++ +|+   +|++++| .+..+|.. ++ +.+|+ +|++++|
T Consensus        98 ~~~f~~l~~L~~L~l~~n~l---------~~lp~-~~~l~-~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n  166 (239)
T 2xwt_C           98 PDALKELPLLKFLGIFNTGL---------KMFPD-LTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN  166 (239)
T ss_dssp             TTSEECCTTCCEEEEEEECC---------CSCCC-CTTCC-BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred             HHHhCCCCCCCEEeCCCCCC---------ccccc-ccccc-ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence            34455555566666655554         23443 33343 443   5555555 55555543 33 55555 5555555


Q ss_pred             ccccccc
Q 036903          313 NVELLWE  319 (323)
Q Consensus       313 ~i~~lP~  319 (323)
                      .++.+|.
T Consensus       167 ~l~~i~~  173 (239)
T 2xwt_C          167 GFTSVQG  173 (239)
T ss_dssp             CCCEECT
T ss_pred             CCcccCH
Confidence            5555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.15  E-value=4e-06  Score=72.60  Aligned_cols=80  Identities=19%  Similarity=0.255  Sum_probs=54.2

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-  300 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-  300 (323)
                      .++.+.+..+.+..+  .+  |.++++|+.|++++|.+         ..+|....  + +|++|++++|.+..+|. ++ 
T Consensus        64 ~L~~L~L~~N~i~~~--~~--l~~l~~L~~L~L~~N~l---------~~l~~~~~--~-~L~~L~L~~N~l~~~~~-l~~  126 (263)
T 1xeu_A           64 NLKELHLSHNQISDL--SP--LKDLTKLEELSVNRNRL---------KNLNGIPS--A-CLSRLFLDNNELRDTDS-LIH  126 (263)
T ss_dssp             TCCEEECCSSCCCCC--GG--GTTCSSCCEEECCSSCC---------SCCTTCCC--S-SCCEEECCSSCCSBSGG-GTT
T ss_pred             CCCEEECCCCccCCC--hh--hccCCCCCEEECCCCcc---------CCcCcccc--C-cccEEEccCCccCCChh-hcC
Confidence            455554444433222  12  67778888888888776         44554333  5 88888888888888764 55 


Q ss_pred             CCCceEEEcCCCcccccc
Q 036903          301 TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       301 L~~L~~L~l~~~~i~~lP  318 (323)
                      +.+|++|++++|+++.+|
T Consensus       127 l~~L~~L~Ls~N~i~~~~  144 (263)
T 1xeu_A          127 LKNLEILSIRNNKLKSIV  144 (263)
T ss_dssp             CTTCCEEECTTSCCCBCG
T ss_pred             cccccEEECCCCcCCCCh
Confidence            888899999888888776

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.15  E-value=3.4e-06  Score=85.04  Aligned_cols=86  Identities=14%  Similarity=0.222  Sum_probs=52.8

Q ss_pred             eeEEEEeecCCccccccCc-hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC
Q 036903          222 VIAGIFLDLSKIRDIHLGS-RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI  300 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~-~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~  300 (323)
                      .++.+.+..+.+.  .++. ..|.++++|+.|+|++|.+         ..+| .++.++ +|++|+|++|.+..+|..+.
T Consensus       549 ~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l---------~~lp-~~~~L~-~L~~L~Ls~N~l~~lp~~l~  615 (876)
T 4ecn_A          549 KIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKV---------RHLE-AFGTNV-KLTDLKLDYNQIEEIPEDFC  615 (876)
T ss_dssp             TCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCC---------CBCC-CCCTTS-EESEEECCSSCCSCCCTTSC
T ss_pred             CccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCc---------ccch-hhcCCC-cceEEECcCCccccchHHHh
Confidence            4555544444332  2222 2567777777777777765         3556 666666 67777776666666666665


Q ss_pred             -CCC-ceEEEcCCCcccccccc
Q 036903          301 -TDK-LVVLNLPCSNVELLWEE  320 (323)
Q Consensus       301 -L~~-L~~L~l~~~~i~~lP~~  320 (323)
                       +.+ |++|++++|.+..+|..
T Consensus       616 ~l~~~L~~L~Ls~N~L~~lp~~  637 (876)
T 4ecn_A          616 AFTDQVEGLGFSHNKLKYIPNI  637 (876)
T ss_dssp             EECTTCCEEECCSSCCCSCCSC
T ss_pred             hccccCCEEECcCCCCCcCchh
Confidence             666 77777766666666653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.15  E-value=2.9e-06  Score=75.23  Aligned_cols=90  Identities=18%  Similarity=0.125  Sum_probs=51.0

Q ss_pred             cceeEEEEeecCCcccc-ccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccC-CCccCcCCCceeEEecCCCCCCCCC
Q 036903          220 TDVIAGIFLDLSKIRDI-HLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLD-QGLDYLPEELTYLHWHGYPLRTLPT  297 (323)
Q Consensus       220 ~~~~~~l~~~~~~~~~l-~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp-~~i~~L~~~Lr~L~l~~~~i~~LP~  297 (323)
                      ...++.+.+..+.+..+ .+....+.++++|+.|++++|.+.        ...| ..+..++ +|++|++++|.++.+|.
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~~l~-~L~~L~Ls~N~l~~ip~  270 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLR--------DAAGAPSCDWPS-QLNSLNLSFTGLKQVPK  270 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCC--------SSCCCSCCCCCT-TCCEEECTTSCCSSCCS
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCC--------cccchhhhhhcC-CCCEEECCCCccChhhh
Confidence            34555555544443322 122344556677777777777652        1111 2344455 67777777776666666


Q ss_pred             CCCCCCceEEEcCCCccccccc
Q 036903          298 NLITDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       298 ~i~L~~L~~L~l~~~~i~~lP~  319 (323)
                      .+. .+|++|++++|+++.+|.
T Consensus       271 ~~~-~~L~~L~Ls~N~l~~~p~  291 (312)
T 1wwl_A          271 GLP-AKLSVLDLSYNRLDRNPS  291 (312)
T ss_dssp             SCC-SEEEEEECCSSCCCSCCC
T ss_pred             hcc-CCceEEECCCCCCCCChh
Confidence            665 667777777776666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.15  E-value=1.4e-06  Score=75.50  Aligned_cols=82  Identities=21%  Similarity=0.110  Sum_probs=63.9

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCC
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLIT  301 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L  301 (323)
                      .++.+.+..+.+..+    +.+..+++|+.|++++|.+         ..+|. +..++ +|++|++++|.+..+|.... 
T Consensus        42 ~L~~L~l~~n~i~~l----~~l~~l~~L~~L~L~~N~i---------~~~~~-l~~l~-~L~~L~L~~N~l~~l~~~~~-  105 (263)
T 1xeu_A           42 GVQNFNGDNSNIQSL----AGMQFFTNLKELHLSHNQI---------SDLSP-LKDLT-KLEELSVNRNRLKNLNGIPS-  105 (263)
T ss_dssp             TCSEEECTTSCCCCC----TTGGGCTTCCEEECCSSCC---------CCCGG-GTTCS-SCCEEECCSSCCSCCTTCCC-
T ss_pred             cCcEEECcCCCcccc----hHHhhCCCCCEEECCCCcc---------CCChh-hccCC-CCCEEECCCCccCCcCcccc-
Confidence            455555554444332    2578899999999999987         55665 88898 99999999999999987666 


Q ss_pred             CCceEEEcCCCccccccc
Q 036903          302 DKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       302 ~~L~~L~l~~~~i~~lP~  319 (323)
                      .+|++|++++|.++.+|.
T Consensus       106 ~~L~~L~L~~N~l~~~~~  123 (263)
T 1xeu_A          106 ACLSRLFLDNNELRDTDS  123 (263)
T ss_dssp             SSCCEEECCSSCCSBSGG
T ss_pred             CcccEEEccCCccCCChh
Confidence            899999999999888763

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.15  E-value=3.1e-06  Score=69.81  Aligned_cols=82  Identities=12%  Similarity=0.017  Sum_probs=61.7

Q ss_pred             ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCC-CCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPN-RRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL  299 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~-~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i  299 (323)
                      ..++.+.+..+.+  .......|.++++|+.|++++|. +         ..+| .+..++ +|++|++++|.+..+| .+
T Consensus       112 ~~L~~L~Ls~n~i--~~~~~~~l~~l~~L~~L~L~~n~~i---------~~~~-~l~~l~-~L~~L~l~~n~i~~~~-~l  177 (197)
T 4ezg_A          112 TSLTLLDISHSAH--DDSILTKINTLPKVNSIDLSYNGAI---------TDIM-PLKTLP-ELKSLNIQFDGVHDYR-GI  177 (197)
T ss_dssp             TTCCEEECCSSBC--BGGGHHHHTTCSSCCEEECCSCTBC---------CCCG-GGGGCS-SCCEEECTTBCCCCCT-TG
T ss_pred             CCCCEEEecCCcc--CcHhHHHHhhCCCCCEEEccCCCCc---------cccH-hhcCCC-CCCEEECCCCCCcChH-Hh
Confidence            3455555544433  22335678899999999999997 5         5566 688999 9999999999999998 66


Q ss_pred             C-CCCceEEEcCCCcccc
Q 036903          300 I-TDKLVVLNLPCSNVEL  316 (323)
Q Consensus       300 ~-L~~L~~L~l~~~~i~~  316 (323)
                      . +++|++|++.+|.|..
T Consensus       178 ~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          178 EDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             GGCSSCCEEEECBC----
T ss_pred             ccCCCCCEEEeeCcccCC
Confidence            6 9999999999998753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.14  E-value=2.3e-06  Score=77.15  Aligned_cols=45  Identities=24%  Similarity=0.184  Sum_probs=21.0

Q ss_pred             CccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCccccccc
Q 036903          274 GLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       274 ~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~~lP~  319 (323)
                      .+..++ +|++|++++|.+..+|.. ++ +++|++|++++|.++.+|.
T Consensus        95 ~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~  141 (353)
T 2z80_A           95 SFSSLG-SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE  141 (353)
T ss_dssp             TTTTCT-TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS
T ss_pred             hcCCCC-CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc
Confidence            344444 444444444444444443 33 4444444444444444443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.14  E-value=2.4e-06  Score=83.43  Aligned_cols=71  Identities=27%  Similarity=0.367  Sum_probs=45.6

Q ss_pred             chhhhCCCCceEEEEeCCCCCCCCCCCcccc------------------cCCCcc--CcCCCceeEEecCCC-CCCCCCC
Q 036903          240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVH------------------LDQGLD--YLPEELTYLHWHGYP-LRTLPTN  298 (323)
Q Consensus       240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~------------------lp~~i~--~L~~~Lr~L~l~~~~-i~~LP~~  298 (323)
                      +..|.++++|++|+|++|.+         ..                  +|+.++  .++ +|++|++++|. ...+|..
T Consensus       199 p~~l~~l~~L~~L~Ls~n~l---------~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~-~L~~L~L~~n~l~~~~p~~  268 (636)
T 4eco_A          199 SKAVMRLTKLRQFYMGNSPF---------VAENICEAWENENSEYAQQYKTEDLKWDNLK-DLTDVEVYNCPNLTKLPTF  268 (636)
T ss_dssp             CGGGGGCTTCCEEEEESCCC---------CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCEEEEECCTTCSSCCTT
T ss_pred             CHHHhcccCCCEEECcCCcc---------ccccccccccccccchhcccCchhhhhcccC-CCCEEEecCCcCCccChHH
Confidence            34566677777777777665         22                  666666  676 77777777664 3466666


Q ss_pred             CC-CCCceEEEcCCCc-cc--ccccc
Q 036903          299 LI-TDKLVVLNLPCSN-VE--LLWEE  320 (323)
Q Consensus       299 i~-L~~L~~L~l~~~~-i~--~lP~~  320 (323)
                      ++ +++|++|++++|+ ++  .+|.+
T Consensus       269 l~~l~~L~~L~Ls~n~~l~~~~lp~~  294 (636)
T 4eco_A          269 LKALPEMQLINVACNRGISGEQLKDD  294 (636)
T ss_dssp             TTTCSSCCEEECTTCTTSCHHHHHHH
T ss_pred             HhcCCCCCEEECcCCCCCccccchHH
Confidence            65 7777777777775 55  35543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.14  E-value=3.3e-06  Score=81.66  Aligned_cols=71  Identities=14%  Similarity=0.120  Sum_probs=50.3

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC-CCCCC-CCCceEEEcCCCccc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL-PTNLI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L-P~~i~-L~~L~~L~l~~~~i~  315 (323)
                      +.+..|.++++|++|+|++|.+.        ...|..++.++ +|++|++++|.+..+ |..++ +++|++|++++|.+.
T Consensus        72 ~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~-~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~  142 (606)
T 3t6q_A           72 IHEDTFQSQHRLDTLVLTANPLI--------FMAETALSGPK-ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS  142 (606)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCS--------EECTTTTSSCT-TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCC
T ss_pred             eChhhccCccccCeeeCCCCccc--------ccChhhhcccc-cccEeeccccCcccCCcchhccCCcccEEECCCCccc
Confidence            44566677777777777777651        33466777777 888888888777777 45566 788888888888777


Q ss_pred             cc
Q 036903          316 LL  317 (323)
Q Consensus       316 ~l  317 (323)
                      .+
T Consensus       143 ~~  144 (606)
T 3t6q_A          143 SI  144 (606)
T ss_dssp             CC
T ss_pred             cc
Confidence            65

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.13  E-value=5.8e-06  Score=74.30  Aligned_cols=69  Identities=28%  Similarity=0.230  Sum_probs=61.1

Q ss_pred             hhCCCCceEEEEeC-CCCCCCCCCCcccccC-CCccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcccccc
Q 036903          243 FENMTNLRLLKFYL-PNRRGDPIMSSKVHLD-QGLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       243 ~~~~~~LrvL~L~~-~~~~~~~~~~~~~~lp-~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~~lP  318 (323)
                      +..+.+|+.|+|++ |.+         ..+| ..++.|+ +|++|+|++|.+..+|.. ++ |.+|+.|+|++|++..+|
T Consensus        27 l~~~~~L~~L~l~~~n~l---------~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~   96 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHL---------QHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS   96 (347)
T ss_dssp             SCSCSCCSEEECCSCSSC---------CEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred             CCCCCCeeEEEccCCCCC---------CCcChhHhcccc-CCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC
Confidence            88999999999996 877         5565 5799999 999999999999999875 56 999999999999999999


Q ss_pred             ccc
Q 036903          319 EEK  321 (323)
Q Consensus       319 ~~i  321 (323)
                      .++
T Consensus        97 ~~~   99 (347)
T 2ifg_A           97 WKT   99 (347)
T ss_dssp             STT
T ss_pred             HHH
Confidence            754

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.13  E-value=3.8e-06  Score=80.21  Aligned_cols=69  Identities=13%  Similarity=0.194  Sum_probs=41.1

Q ss_pred             hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC-------------------CC
Q 036903          241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL-------------------IT  301 (323)
Q Consensus       241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i-------------------~L  301 (323)
                      ..+..+++|++|++++|.+         ..+|..++.++ +|++|++++|.+..+|..+                   ++
T Consensus       381 ~~~~~l~~L~~L~Ls~N~l---------~~lp~~~~~~~-~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l  450 (549)
T 2z81_A          381 EILLTLKNLTSLDISRNTF---------HPMPDSCQWPE-KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFL  450 (549)
T ss_dssp             HHGGGCTTCCEEECTTCCC---------CCCCSCCCCCT-TCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCC
T ss_pred             hhhhcCCCCCEEECCCCCC---------ccCChhhcccc-cccEEECCCCCcccccchhcCCceEEECCCCChhhhcccC
Confidence            4466777777777777765         45666666665 6666666666665555432                   24


Q ss_pred             CCceEEEcCCCccccccc
Q 036903          302 DKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       302 ~~L~~L~l~~~~i~~lP~  319 (323)
                      ++|++|++++|+++.+|.
T Consensus       451 ~~L~~L~Ls~N~l~~ip~  468 (549)
T 2z81_A          451 PRLQELYISRNKLKTLPD  468 (549)
T ss_dssp             TTCCEEECCSSCCSSCCC
T ss_pred             ChhcEEECCCCccCcCCC
Confidence            555555555555555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.13  E-value=3.8e-06  Score=73.79  Aligned_cols=65  Identities=20%  Similarity=0.101  Sum_probs=35.4

Q ss_pred             hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccc
Q 036903          242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP  318 (323)
                      .+.++++|+.|++++|.+         ..++. +..++ +|++|++++|.+..+|. +. +++|+.|++++|.+...|
T Consensus       151 ~l~~l~~L~~L~L~~N~l---------~~~~~-l~~l~-~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          151 VLSRLTKLDTLSLEDNQI---------SDIVP-LAGLT-KLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             GGGGCTTCSEEECCSSCC---------CCCGG-GTTCT-TCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred             hhccCCCCCEEEccCCcc---------ccchh-hcCCC-ccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCCc
Confidence            445555555555555554         23332 55555 66666666666655554 33 666666666665554444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.12  E-value=5.3e-06  Score=81.39  Aligned_cols=69  Identities=14%  Similarity=0.299  Sum_probs=37.6

Q ss_pred             CchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCCCC-CCC-CCCceEEEcCCCccc
Q 036903          239 GSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPT-NLI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       239 ~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~-~i~-L~~L~~L~l~~~~i~  315 (323)
                      .+..|.++++|++|+|++|.+         ..+|. .++.++ +|++|++++|.+..+|. .++ +++|++|++++|.+.
T Consensus        65 ~~~~~~~l~~L~~L~L~~n~l---------~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  134 (680)
T 1ziw_A           65 EPELCQKLPMLKVLNLQHNEL---------SQLSDKTFAFCT-NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS  134 (680)
T ss_dssp             CTTHHHHCTTCCEEECCSSCC---------CCCCTTTTTTCT-TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS
T ss_pred             CHHHHhcccCcCEEECCCCcc---------CccChhhhccCC-CCCEEECCCCccCccChhHccccCCCCEEECCCCccc
Confidence            344555666666666666554         33443 355555 56666665555555543 344 555555555555554


Q ss_pred             cc
Q 036903          316 LL  317 (323)
Q Consensus       316 ~l  317 (323)
                      ..
T Consensus       135 ~~  136 (680)
T 1ziw_A          135 ST  136 (680)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.12  E-value=2.9e-06  Score=74.56  Aligned_cols=82  Identities=22%  Similarity=0.257  Sum_probs=55.4

Q ss_pred             ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI  300 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~  300 (323)
                      ..++.+.+..+.+..+  .+  +.++++|+.|++++|.+         ..+| .+..++ +|++|++++|.+..+| .++
T Consensus        68 ~~L~~L~L~~n~l~~~--~~--l~~l~~L~~L~l~~n~l---------~~~~-~l~~l~-~L~~L~L~~n~i~~~~-~l~  131 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDI--KP--LANLKNLGWLFLDENKV---------KDLS-SLKDLK-KLKSLSLEHNGISDIN-GLV  131 (291)
T ss_dssp             TTCCEEECCSSCCCCC--GG--GTTCTTCCEEECCSSCC---------CCGG-GGTTCT-TCCEEECTTSCCCCCG-GGG
T ss_pred             CCCCEEEccCCccCCC--cc--cccCCCCCEEECCCCcC---------CCCh-hhccCC-CCCEEECCCCcCCCCh-hhc
Confidence            3455554444433222  11  67788888888888776         3444 377787 8888888888888875 354


Q ss_pred             -CCCceEEEcCCCcccccc
Q 036903          301 -TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       301 -L~~L~~L~l~~~~i~~lP  318 (323)
                       +.+|++|++++|.++.++
T Consensus       132 ~l~~L~~L~l~~n~l~~~~  150 (291)
T 1h6t_A          132 HLPQLESLYLGNNKITDIT  150 (291)
T ss_dssp             GCTTCCEEECCSSCCCCCG
T ss_pred             CCCCCCEEEccCCcCCcch
Confidence             888888888888777664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.12  E-value=3.2e-06  Score=80.72  Aligned_cols=71  Identities=21%  Similarity=0.259  Sum_probs=40.5

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCC--CCCCC-CCCceEEEcCCCc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTL--PTNLI-TDKLVVLNLPCSN  313 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~L--P~~i~-L~~L~~L~l~~~~  313 (323)
                      +.+..|.++++|++|++++|.+         ..+|. .++.++ +|++|++++|.+..+  |..++ +++|++|++++|.
T Consensus        65 ~~~~~~~~l~~L~~L~Ls~n~l---------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A           65 IEGDAFYSLGSLEHLDLSDNHL---------SSLSSSWFGPLS-SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCC---------CSCCHHHHTTCT-TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             cChhhccccccCCEEECCCCcc---------CccCHHHhccCC-CCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence            3344556666666666666654         33333 266666 666666666666533  45555 6666666666664


Q ss_pred             -ccccc
Q 036903          314 -VELLW  318 (323)
Q Consensus       314 -i~~lP  318 (323)
                       +..+|
T Consensus       135 ~~~~~~  140 (549)
T 2z81_A          135 TFSEIR  140 (549)
T ss_dssp             SCCEEC
T ss_pred             cccccC
Confidence             45554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.12  E-value=3.7e-06  Score=82.54  Aligned_cols=87  Identities=17%  Similarity=0.171  Sum_probs=71.1

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-CC
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN-LI  300 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~  300 (323)
                      .++.+.+....+  ..+.+..|.++++|++|+|+++.+.        ...|..++.++ +|++|+|++|.+..+|.. ++
T Consensus        26 ~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~   94 (680)
T 1ziw_A           26 NITVLNLTHNQL--RRLPAANFTRYSQLTSLDVGFNTIS--------KLEPELCQKLP-MLKVLNLQHNELSQLSDKTFA   94 (680)
T ss_dssp             TCSEEECCSSCC--CCCCGGGGGGGTTCSEEECCSSCCC--------CCCTTHHHHCT-TCCEEECCSSCCCCCCTTTTT
T ss_pred             CCcEEECCCCCC--CCcCHHHHhCCCcCcEEECCCCccC--------ccCHHHHhccc-CcCEEECCCCccCccChhhhc
Confidence            456665554443  3456677999999999999999872        33467789999 999999999999999985 77


Q ss_pred             -CCCceEEEcCCCccccccc
Q 036903          301 -TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       301 -L~~L~~L~l~~~~i~~lP~  319 (323)
                       +++|++|++++|.+..+|.
T Consensus        95 ~l~~L~~L~L~~n~l~~~~~  114 (680)
T 1ziw_A           95 FCTNLTELHLMSNSIQKIKN  114 (680)
T ss_dssp             TCTTCSEEECCSSCCCCCCS
T ss_pred             cCCCCCEEECCCCccCccCh
Confidence             9999999999999998874

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.11  E-value=3.3e-06  Score=84.31  Aligned_cols=74  Identities=16%  Similarity=0.169  Sum_probs=62.1

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC-CCCCCCC-CCCceEEEcCCCccc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR-TLPTNLI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~-~LP~~i~-L~~L~~L~l~~~~i~  315 (323)
                      ..+..|.+++.|++|+|++|.+.        ..+|..++.|+ +|++|+|++|++. .+|..++ |.+|++|++++|++.
T Consensus       647 ~ip~~l~~l~~L~~L~Ls~N~l~--------g~ip~~l~~L~-~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          647 YIPKEIGSMPYLFILNLGHNDIS--------GSIPDEVGDLR-GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCC--------SCCCGGGGGCT-TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             cCCHHHhccccCCEEeCcCCccC--------CCCChHHhCCC-CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence            45667888999999999999872        47888999998 9999999999887 8888887 999999999999875


Q ss_pred             -ccccc
Q 036903          316 -LLWEE  320 (323)
Q Consensus       316 -~lP~~  320 (323)
                       .+|++
T Consensus       718 g~iP~~  723 (768)
T 3rgz_A          718 GPIPEM  723 (768)
T ss_dssp             EECCSS
T ss_pred             ccCCCc
Confidence             67764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.11  E-value=3e-06  Score=72.02  Aligned_cols=72  Identities=21%  Similarity=0.282  Sum_probs=48.5

Q ss_pred             cCchhhhCCCCceEEEEeC-CCCCCCCCCCcccccC-CCccCcCCCceeEEecCCCCCCCCCCCC-CCCce---EEEcCC
Q 036903          238 LGSRAFENMTNLRLLKFYL-PNRRGDPIMSSKVHLD-QGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLV---VLNLPC  311 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~-~~~~~~~~~~~~~~lp-~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~---~L~l~~  311 (323)
                      +.+..|.++++|+.|++++ +.+         ..+| ..+..++ +|++|++++|.++.+|. ++ +.+|+   +|++++
T Consensus        71 i~~~~f~~l~~L~~L~l~~~n~l---------~~i~~~~f~~l~-~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~  139 (239)
T 2xwt_C           71 LESHSFYNLSKVTHIEIRNTRNL---------TYIDPDALKELP-LLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITD  139 (239)
T ss_dssp             ECTTTEESCTTCCEEEEEEETTC---------CEECTTSEECCT-TCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEES
T ss_pred             eCHhHcCCCcCCcEEECCCCCCe---------eEcCHHHhCCCC-CCCEEeCCCCCCccccc-cccccccccccEEECCC
Confidence            4445666777777777776 555         3444 4566777 77777777777777776 54 66666   777777


Q ss_pred             C-cccccccc
Q 036903          312 S-NVELLWEE  320 (323)
Q Consensus       312 ~-~i~~lP~~  320 (323)
                      | .++.+|.+
T Consensus       140 N~~l~~i~~~  149 (239)
T 2xwt_C          140 NPYMTSIPVN  149 (239)
T ss_dssp             CTTCCEECTT
T ss_pred             CcchhhcCcc
Confidence            7 77777653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.10  E-value=2e-06  Score=76.15  Aligned_cols=89  Identities=16%  Similarity=0.080  Sum_probs=57.9

Q ss_pred             ceeEEEEeecCCccccccCc-hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCc---CCCceeEEecCCCCCCCC
Q 036903          221 DVIAGIFLDLSKIRDIHLGS-RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYL---PEELTYLHWHGYPLRTLP  296 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~-~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L---~~~Lr~L~l~~~~i~~LP  296 (323)
                      ..++.+.+..+.+..+.... ..+..+++|+.|+|++|.+.        ...|..+..+   + +|++|+|++|.++.+|
T Consensus       197 ~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~--------~~~p~~~~~~~~~~-~L~~L~Ls~N~l~~lp  267 (310)
T 4glp_A          197 PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLR--------ATVNPSAPRCMWSS-ALNSLNLSFAGLEQVP  267 (310)
T ss_dssp             CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCC--------CCCCSCCSSCCCCT-TCCCEECCSSCCCSCC
T ss_pred             CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCC--------ccchhhHHhccCcC-cCCEEECCCCCCCchh
Confidence            34555544444432221111 13567788888888888762        2236666655   5 8888888888888888


Q ss_pred             CCCCCCCceEEEcCCCccccccc
Q 036903          297 TNLITDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       297 ~~i~L~~L~~L~l~~~~i~~lP~  319 (323)
                      ..+. ++|++|++++|+++.+|.
T Consensus       268 ~~~~-~~L~~L~Ls~N~l~~~~~  289 (310)
T 4glp_A          268 KGLP-AKLRVLDLSSNRLNRAPQ  289 (310)
T ss_dssp             SCCC-SCCSCEECCSCCCCSCCC
T ss_pred             hhhc-CCCCEEECCCCcCCCCch
Confidence            7765 788888888888877654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.10  E-value=2e-06  Score=75.88  Aligned_cols=68  Identities=21%  Similarity=0.167  Sum_probs=39.4

Q ss_pred             hhCCCCceEEEEeCCCCCCCCCCCcccccC--CCccCcCCCceeEEecCCCCCCCC-CCCC-CCCceEEEcCCCcccc--
Q 036903          243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLD--QGLDYLPEELTYLHWHGYPLRTLP-TNLI-TDKLVVLNLPCSNVEL--  316 (323)
Q Consensus       243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp--~~i~~L~~~Lr~L~l~~~~i~~LP-~~i~-L~~L~~L~l~~~~i~~--  316 (323)
                      |.++++|+.|+++++.+         ..++  ..+..++ +|++|++++|.+..++ ..++ +++|++|++++|.+..  
T Consensus        97 ~~~l~~L~~L~l~~n~l---------~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  166 (306)
T 2z66_A           97 FLGLEQLEHLDFQHSNL---------KQMSEFSVFLSLR-NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF  166 (306)
T ss_dssp             EETCTTCCEEECTTSEE---------ESSTTTTTTTTCT-TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred             cCCCCCCCEEECCCCcc---------cccccchhhhhcc-CCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence            45555555555555544         3333  3566666 6777777766665443 3345 6777777777776654  


Q ss_pred             cccc
Q 036903          317 LWEE  320 (323)
Q Consensus       317 lP~~  320 (323)
                      +|..
T Consensus       167 ~~~~  170 (306)
T 2z66_A          167 LPDI  170 (306)
T ss_dssp             ECSC
T ss_pred             chhH
Confidence            5543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.10  E-value=5e-06  Score=73.64  Aligned_cols=65  Identities=17%  Similarity=0.180  Sum_probs=40.4

Q ss_pred             hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccc
Q 036903          242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP  318 (323)
                      .+.++++|+.|++++|.+         ..+|. +..++ +|++|++++|.+..+|. ++ +++|++|++++|.++.+|
T Consensus       102 ~~~~l~~L~~L~l~~n~l---------~~~~~-l~~l~-~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~  167 (308)
T 1h6u_A          102 AIAGLQSIKTLDLTSTQI---------TDVTP-LAGLS-NLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT  167 (308)
T ss_dssp             GGTTCTTCCEEECTTSCC---------CCCGG-GTTCT-TCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred             hhcCCCCCCEEECCCCCC---------CCchh-hcCCC-CCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh
Confidence            455566666666666655         33332 66666 67777777666666665 44 677777777777666555

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.09  E-value=4.1e-06  Score=74.21  Aligned_cols=65  Identities=15%  Similarity=0.186  Sum_probs=48.8

Q ss_pred             hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccccc
Q 036903          243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~  319 (323)
                      +.++++|+.|++++|.+         ..+| .+..++ +|++|++++|.+..+|. ++ +++|++|++++|.+..+|.
T Consensus        81 ~~~l~~L~~L~L~~n~l---------~~~~-~~~~l~-~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~  146 (308)
T 1h6u_A           81 LKNLTKITELELSGNPL---------KNVS-AIAGLQ-SIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP  146 (308)
T ss_dssp             GTTCCSCCEEECCSCCC---------SCCG-GGTTCT-TCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred             HccCCCCCEEEccCCcC---------CCch-hhcCCC-CCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc
Confidence            67777888888887776         3344 577777 88888888888888776 55 8888888888887776663

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.08  E-value=5.9e-06  Score=83.34  Aligned_cols=67  Identities=13%  Similarity=0.114  Sum_probs=53.6

Q ss_pred             CCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecC------CC-CCCCCCCCC-CCCceEEEcCCCcccc
Q 036903          245 NMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHG------YP-LRTLPTNLI-TDKLVVLNLPCSNVEL  316 (323)
Q Consensus       245 ~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~------~~-i~~LP~~i~-L~~L~~L~l~~~~i~~  316 (323)
                      .+++|+.|+|++|.+         ..+|..++.++ +|++|+|++      |. ...+|..++ +++|+.|+|++|.+..
T Consensus       751 ~l~~L~~L~Ls~N~L---------~~lp~~l~~L~-~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~  820 (876)
T 4ecn_A          751 TLPYLSNMDVSYNCF---------SSFPTQPLNSS-QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK  820 (876)
T ss_dssp             TCTTCCEEECCSSCC---------SSCCCGGGGCT-TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCB
T ss_pred             cCCCcCEEEeCCCCC---------CccchhhhcCC-CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCc
Confidence            788888888888877         45788888888 888888876      43 457788887 8888888888888888


Q ss_pred             ccccc
Q 036903          317 LWEEK  321 (323)
Q Consensus       317 lP~~i  321 (323)
                      +|.++
T Consensus       821 Ip~~l  825 (876)
T 4ecn_A          821 VDEKL  825 (876)
T ss_dssp             CCSCC
T ss_pred             cCHhh
Confidence            88754

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.08  E-value=7.2e-08  Score=79.86  Aligned_cols=66  Identities=17%  Similarity=0.096  Sum_probs=35.9

Q ss_pred             hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccc
Q 036903          242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP  318 (323)
                      .+.++++|+.|++++|.+         ..+|..+..++ +|++|++++|.+..+| .++ +++|++|++++|.+..+|
T Consensus        65 ~~~~l~~L~~L~l~~n~l---------~~l~~~~~~~~-~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~  131 (198)
T 1ds9_A           65 SLSGMENLRILSLGRNLI---------KKIENLDAVAD-TLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWG  131 (198)
T ss_dssp             CHHHHTTCCEEEEEEEEE---------CSCSSHHHHHH-HCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHH
T ss_pred             ccccCCCCCEEECCCCCc---------ccccchhhcCC-cCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchh
Confidence            445555555555555544         34555454455 5555666555555555 343 555666666665555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.08  E-value=6.8e-06  Score=79.44  Aligned_cols=71  Identities=20%  Similarity=0.224  Sum_probs=42.4

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCC--CCCCCCCCceEEEcCCCcc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTL--PTNLITDKLVVLNLPCSNV  314 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~L--P~~i~L~~L~~L~l~~~~i  314 (323)
                      +.+..|.++++|++|++++|.+         ..+ |..++.++ +|++|++++|.+..+  |..+++++|++|++++|.+
T Consensus        96 ~~~~~~~~l~~L~~L~L~~n~i---------~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  165 (606)
T 3t6q_A           96 MAETALSGPKALKHLFFIQTGI---------SSIDFIPLHNQK-TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI  165 (606)
T ss_dssp             ECTTTTSSCTTCCEEECTTSCC---------SCGGGSCCTTCT-TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred             cChhhhcccccccEeeccccCc---------ccCCcchhccCC-cccEEECCCCcccccCcccccCCcccCEEEcccCcc
Confidence            3445566666666666666665         233 44566666 666666666666655  3333466666666666666


Q ss_pred             cccc
Q 036903          315 ELLW  318 (323)
Q Consensus       315 ~~lP  318 (323)
                      ..++
T Consensus       166 ~~~~  169 (606)
T 3t6q_A          166 HYLS  169 (606)
T ss_dssp             CEEC
T ss_pred             cccC
Confidence            5553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.07  E-value=7.2e-06  Score=76.54  Aligned_cols=79  Identities=19%  Similarity=0.203  Sum_probs=40.4

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCC----------------CCcccccCC-CccCcCCCceeEEecCCCCCCCCCCCC
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPI----------------MSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPTNLI  300 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~----------------~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~~i~  300 (323)
                      +....|..+++|+.|+|++|.+.....                +.....+|. .+..++ +|++|++++|.+..+|....
T Consensus       138 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~  216 (452)
T 3zyi_A          138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF-NLKYLNLGMCNIKDMPNLTP  216 (452)
T ss_dssp             CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT-TCCEEECTTSCCSSCCCCTT
T ss_pred             cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC-CCCEEECCCCcccccccccc
Confidence            444556777777777777776521000                000011111 244455 56666666666665554223


Q ss_pred             CCCceEEEcCCCccccc
Q 036903          301 TDKLVVLNLPCSNVELL  317 (323)
Q Consensus       301 L~~L~~L~l~~~~i~~l  317 (323)
                      +.+|++|+|++|.+..+
T Consensus       217 l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          217 LVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             CTTCCEEECTTSCCSEE
T ss_pred             cccccEEECcCCcCccc
Confidence            66666666666665554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.06  E-value=3.9e-06  Score=79.29  Aligned_cols=65  Identities=11%  Similarity=0.087  Sum_probs=37.9

Q ss_pred             CCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccccc
Q 036903          245 NMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       245 ~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      .+++|+.|+|++|.+         ..+|.. ..++ +|++|+|++|.+..+|+.++ +.+|+.|++++|.+..+|..
T Consensus       167 ~l~~L~~L~Ls~N~l---------~~~~~~-~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~  232 (487)
T 3oja_A          167 SSDTLEHLNLQYNFI---------YDVKGQ-VVFA-KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA  232 (487)
T ss_dssp             GTTTCCEEECTTSCC---------CEEECC-CCCT-TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT
T ss_pred             hCCcccEEecCCCcc---------cccccc-ccCC-CCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchh
Confidence            566666666666665         233332 2355 66666666666666665554 66666666666666655554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.05  E-value=8.8e-06  Score=75.69  Aligned_cols=93  Identities=18%  Similarity=0.199  Sum_probs=47.5

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCC----------------CCcccccCC-CccCcCCCcee
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPI----------------MSSKVHLDQ-GLDYLPEELTY  284 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~----------------~~~~~~lp~-~i~~L~~~Lr~  284 (323)
                      .++.+.+..+.+  ..+....|..+++|+.|+|++|.+.....                +.....+|. .+..++ +|++
T Consensus       113 ~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~-~L~~  189 (440)
T 3zyj_A          113 NLNTLELFDNRL--TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-NLRY  189 (440)
T ss_dssp             SCCEEECCSSCC--SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS-SCCE
T ss_pred             cCCEEECCCCcC--CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc-ccCe
Confidence            344444433322  23444566777777777777776521000                000011111 345555 6666


Q ss_pred             EEecCCCCCCCCCCCCCCCceEEEcCCCccccc
Q 036903          285 LHWHGYPLRTLPTNLITDKLVVLNLPCSNVELL  317 (323)
Q Consensus       285 L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~l  317 (323)
                      |++++|.+..+|....+.+|++|+|++|.++.+
T Consensus       190 L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          190 LNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             EECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE
T ss_pred             ecCCCCcCccccccCCCcccCEEECCCCccCcc
Confidence            666666666666432366666666666666555

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.03  E-value=1.2e-05  Score=74.80  Aligned_cols=89  Identities=17%  Similarity=0.144  Sum_probs=71.2

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC-CCCCC
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL-PTNLI  300 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L-P~~i~  300 (323)
                      .++.+.+..+.+  ..+.+..|.++++|+.|++++|.+.        ...|..++.++ +|++|+|++|.+..+ |..++
T Consensus       300 ~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~  368 (455)
T 3v47_A          300 DLEQLTLAQNEI--NKIDDNAFWGLTHLLKLNLSQNFLG--------SIDSRMFENLD-KLEVLDLSYNHIRALGDQSFL  368 (455)
T ss_dssp             TCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCC--------EECGGGGTTCT-TCCEEECCSSCCCEECTTTTT
T ss_pred             CCCEEECCCCcc--cccChhHhcCcccCCEEECCCCccC--------CcChhHhcCcc-cCCEEECCCCcccccChhhcc
Confidence            455554444433  3455678899999999999999872        33467789999 999999999999988 66787


Q ss_pred             -CCCceEEEcCCCccccccccc
Q 036903          301 -TDKLVVLNLPCSNVELLWEEK  321 (323)
Q Consensus       301 -L~~L~~L~l~~~~i~~lP~~i  321 (323)
                       +++|++|++++|.++.+|.++
T Consensus       369 ~l~~L~~L~L~~N~l~~~~~~~  390 (455)
T 3v47_A          369 GLPNLKELALDTNQLKSVPDGI  390 (455)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTT
T ss_pred             ccccccEEECCCCccccCCHhH
Confidence             999999999999999998753

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.02  E-value=6.1e-06  Score=83.21  Aligned_cols=73  Identities=21%  Similarity=0.217  Sum_probs=50.7

Q ss_pred             ccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCC-CCCC--CC-CCCceEEEcCCC
Q 036903          237 HLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRT-LPTN--LI-TDKLVVLNLPCS  312 (323)
Q Consensus       237 ~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~-LP~~--i~-L~~L~~L~l~~~  312 (323)
                      .+.+..|.++++|++|+|++|.+.        ...|+.++.++ +|++|+|++|.+.. +|..  ++ |++|++|++++|
T Consensus        63 ~i~~~~f~~L~~L~~L~Ls~N~l~--------~~~p~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N  133 (844)
T 3j0a_A           63 TIDKEAFRNLPNLRILDLGSSKIY--------FLHPDAFQGLF-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN  133 (844)
T ss_dssp             EECTTTTSSCTTCCEEECTTCCCC--------EECTTSSCSCS-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCc--------ccCHhHccCCc-ccCEeeCcCCCCCcccccCccccccCCCCEEECCCC
Confidence            344566777777777777777661        33477777787 88888888877764 4554  55 888888888888


Q ss_pred             cccccc
Q 036903          313 NVELLW  318 (323)
Q Consensus       313 ~i~~lP  318 (323)
                      .+..++
T Consensus       134 ~l~~~~  139 (844)
T 3j0a_A          134 QIRSLY  139 (844)
T ss_dssp             CCCCCC
T ss_pred             cccccc
Confidence            776553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.02  E-value=3.2e-06  Score=84.37  Aligned_cols=72  Identities=14%  Similarity=0.219  Sum_probs=64.1

Q ss_pred             hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC-CCCCCCC-CCCceEEEcCCCccc-cc
Q 036903          241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR-TLPTNLI-TDKLVVLNLPCSNVE-LL  317 (323)
Q Consensus       241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~-~LP~~i~-L~~L~~L~l~~~~i~-~l  317 (323)
                      ..|..+++|++|||++|.+.        ..+|..++.++ .|++|+|++|.+. .+|..++ |++|++|||++|++. .+
T Consensus       626 ~~~~~l~~L~~LdLs~N~l~--------g~ip~~l~~l~-~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~i  696 (768)
T 3rgz_A          626 PTFDNNGSMMFLDMSYNMLS--------GYIPKEIGSMP-YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRI  696 (768)
T ss_dssp             CSCSSSBCCCEEECCSSCCB--------SCCCGGGGGCT-TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECC
T ss_pred             hhhhccccccEEECcCCccc--------ccCCHHHhccc-cCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcC
Confidence            45678899999999999872        57899999999 9999999999988 8999998 999999999999987 77


Q ss_pred             cccc
Q 036903          318 WEEK  321 (323)
Q Consensus       318 P~~i  321 (323)
                      |+.+
T Consensus       697 p~~l  700 (768)
T 3rgz_A          697 PQAM  700 (768)
T ss_dssp             CGGG
T ss_pred             ChHH
Confidence            8754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.02  E-value=7.5e-06  Score=73.41  Aligned_cols=58  Identities=21%  Similarity=0.234  Sum_probs=37.3

Q ss_pred             hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCC
Q 036903          243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCS  312 (323)
Q Consensus       243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~  312 (323)
                      |.++++|++|++++|.+         ..+| .+..++ +|++|++++|.+..+|. +. +++|++|++++|
T Consensus        84 ~~~l~~L~~L~L~~n~i---------~~~~-~~~~l~-~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n  142 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKI---------TDIS-ALQNLT-NLRELYLNEDNISDISP-LANLTKMYSLNLGAN  142 (347)
T ss_dssp             GTTCTTCCEEECCSSCC---------CCCG-GGTTCT-TCSEEECTTSCCCCCGG-GTTCTTCCEEECTTC
T ss_pred             hhcCCcCCEEEccCCcc---------cCch-HHcCCC-cCCEEECcCCcccCchh-hccCCceeEEECCCC
Confidence            56666666666666655         3333 466666 77777777776666666 44 677777777666

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.00  E-value=1.1e-05  Score=75.46  Aligned_cols=62  Identities=26%  Similarity=0.250  Sum_probs=37.2

Q ss_pred             hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccc
Q 036903          243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP  318 (323)
                      +..+++|++|++++|.+         ..+|  ++.++ +|++|++++|.+..+|  ++ +++|++|++++|.++.+|
T Consensus        81 ~~~l~~L~~L~Ls~N~l---------~~~~--~~~l~-~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~  143 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKL---------TNLD--VTPLT-KLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID  143 (457)
T ss_dssp             CTTCTTCSEEECCSSCC---------SCCC--CTTCT-TCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC
T ss_pred             cccCCCCCEEECcCCCC---------ceee--cCCCC-cCCEEECCCCcCCeec--CCCCCcCCEEECCCCccceec
Confidence            45555666666665554         2332  55666 6666666666666665  54 666666666666665553

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.00  E-value=5.6e-06  Score=73.56  Aligned_cols=62  Identities=11%  Similarity=0.162  Sum_probs=57.1

Q ss_pred             hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccc
Q 036903          244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       244 ~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~  315 (323)
                      ..+++|+.|++++|.+         ..+|..+..++ +|++|++++|.+..+|..+. +++|+.|++++|.+.
T Consensus       188 ~~l~~L~~L~Ls~N~l---------~~l~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          188 VVFAKLKTLDLSSNKL---------AFMGPEFQSAA-GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CCCTTCCEEECCSSCC---------CEECGGGGGGT-TCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             cccccCCEEECCCCcC---------CcchhhhcccC-cccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence            3589999999999988         67888899999 99999999999999999997 999999999999876

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=98.00  E-value=6.4e-05  Score=67.32  Aligned_cols=162  Identities=13%  Similarity=0.059  Sum_probs=100.0

Q ss_pred             CCceEEEEcCChhhHhhc----C----C--CCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCch
Q 036903           13 PGSRIIVTTRDKRVLDNF----G----V--PNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPL   82 (323)
Q Consensus        13 ~gs~IlvTTR~~~v~~~~----~----~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL   82 (323)
                      ++..+|+|+|........    .    .  .....+.+.||+.+++.+++...........+.    ...|++.|+|.|+
T Consensus       169 ~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~t~G~P~  244 (357)
T 2fna_A          169 KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKIGGIPG  244 (357)
T ss_dssp             TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHHCSCHH
T ss_pred             CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHHHHhCCCHH
Confidence            467899999987542211    0    0  113579999999999999998864221112222    2789999999999


Q ss_pred             hHHHHhhhhcCC-ChHHHHH-HHHHhhcCCcccHHHHHH-HHh--cCCChhhHhHhhhhcccCCCCCHHHHHHHHh-hcc
Q 036903           83 ALRVLGSFLHRK-SKLDWEN-ALENLKRSSDFEIYDVLK-ISY--NELNPEEKSLFLDIACFFAGEDKNLVTKILD-DSN  156 (323)
Q Consensus        83 Ai~~ig~~L~~~-~~~~w~~-~l~~l~~~~~~~i~~~l~-~sy--~~L~~~~k~cfl~~s~fp~~~~~~~l~~~w~-~~g  156 (323)
                      ++..++..+... +...|-. +.+..    ...+...+. +.+  ..|++..+..+..++. . . ....+..... ..|
T Consensus       245 ~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~~~l~~~~~~~~g  317 (357)
T 2fna_A          245 WLTYFGFIYLDNKNLDFAINQTLEYA----KKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KWSDVKRALELEEG  317 (357)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHH----HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHccccchHHHHHHHHHHH----HHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CHHHHHHHHHHhcC
Confidence            999998876432 3333321 11111    011111121 111  1678888999998888 2 2 5555543221 111


Q ss_pred             -------h--HHHHhhhCCcceEcCCCeEE-ecHHHHHHH
Q 036903          157 -------Y--VLNVLVDKSLLRISRYNKLQ-MHDLLQEMG  186 (323)
Q Consensus       157 -------~--~l~~L~~~~ll~~~~~~~~~-mh~lv~~~~  186 (323)
                             .  +++.|++.+++...+ +.|+ .|++++++.
T Consensus       318 ~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l  356 (357)
T 2fna_A          318 IEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF  356 (357)
T ss_dssp             SCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence                   1  899999999998764 6677 578888764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.99  E-value=8.2e-06  Score=76.46  Aligned_cols=64  Identities=19%  Similarity=0.192  Sum_probs=38.5

Q ss_pred             hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccc
Q 036903          243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP  318 (323)
                      |.++++|+.|++++|.+         ..++. ++.++ +|++|++++|.+..+|. ++ +++|++|++++|.+..+|
T Consensus        86 ~~~l~~L~~L~l~~n~l---------~~~~~-~~~l~-~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~  150 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQI---------ADITP-LANLT-NLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDIS  150 (466)
T ss_dssp             GTTCTTCCEEECCSSCC---------CCCGG-GTTCT-TCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCG
T ss_pred             hhccccCCEEECCCCcc---------ccChh-hcCCC-CCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCCh
Confidence            55666666666666554         33333 56666 66666666666666655 44 666666666666665554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.99  E-value=7.6e-06  Score=72.50  Aligned_cols=60  Identities=18%  Similarity=0.121  Sum_probs=27.9

Q ss_pred             hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCc-----CCCceeEEecCCCCCCCC-CCCC-CCCceEEEcCCCc
Q 036903          244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYL-----PEELTYLHWHGYPLRTLP-TNLI-TDKLVVLNLPCSN  313 (323)
Q Consensus       244 ~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L-----~~~Lr~L~l~~~~i~~LP-~~i~-L~~L~~L~l~~~~  313 (323)
                      ..+++|+.|++++|.+         ...|..++.+     + +|++|++++|.+..+| ..++ +++|++|++++|.
T Consensus       118 ~~l~~L~~L~Ls~N~l---------~~~~~~~~~l~~~~~~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSW---------ATRDAWLAELQQWLKP-GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP  184 (312)
T ss_dssp             CCSCCCSEEEEESCBC---------SSSSSHHHHHHTTCCT-TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred             hcCCCccEEEccCCCC---------cchhHHHHHHHHhhcC-CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence            4455555555555544         2224434433     3 4555555555444444 3333 4455555554444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.98  E-value=6e-06  Score=78.31  Aligned_cols=82  Identities=15%  Similarity=0.132  Sum_probs=65.6

Q ss_pred             ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCC--CCCC
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRT--LPTN  298 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~--LP~~  298 (323)
                      ..++.+.+..+.+  ..+.+..|.++++|++|+|++|.+         ..+|..  .++ +|++|++++|.+..  +|..
T Consensus        45 ~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l---------~~lp~~--~l~-~L~~L~L~~N~l~~~~~p~~  110 (520)
T 2z7x_B           45 SKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKL---------VKISCH--PTV-NLKHLDLSFNAFDALPICKE  110 (520)
T ss_dssp             TTCCEEECCSSCC--CEEEGGGGTTCTTCCEEECCSSCC---------CEEECC--CCC-CCSEEECCSSCCSSCCCCGG
T ss_pred             ccccEEecCCCcc--CCcChHHhhcccCCCEEecCCCce---------eecCcc--ccC-CccEEeccCCccccccchhh
Confidence            4566665554443  345567899999999999999987         578877  788 99999999999986  5678


Q ss_pred             CC-CCCceEEEcCCCcccc
Q 036903          299 LI-TDKLVVLNLPCSNVEL  316 (323)
Q Consensus       299 i~-L~~L~~L~l~~~~i~~  316 (323)
                      ++ +++|++|++++|.+..
T Consensus       111 ~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B          111 FGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             GGGCTTCCEEEEEESSCCG
T ss_pred             hccCCcceEEEecCcccch
Confidence            87 9999999999997753

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=97.98  E-value=0.00031  Score=62.64  Aligned_cols=163  Identities=16%  Similarity=0.111  Sum_probs=100.0

Q ss_pred             CCceEEEEcCChhhHhhc----C----C--CCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCch
Q 036903           13 PGSRIIVTTRDKRVLDNF----G----V--PNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPL   82 (323)
Q Consensus        13 ~gs~IlvTTR~~~v~~~~----~----~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL   82 (323)
                      ++.++|+|++...+...+    .    .  .....+.+.||+.+|+.+++...........  -.+.+..|.+.|||.|+
T Consensus       163 ~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~--~~~~~~~i~~~tgG~P~  240 (350)
T 2qen_A          163 PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV--PENEIEEAVELLDGIPG  240 (350)
T ss_dssp             TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHHTTCHH
T ss_pred             CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHhCCCHH
Confidence            478899999876542211    1    0  1234799999999999999987542211111  13567889999999999


Q ss_pred             hHHHHhhhhcC-CChHHHHHHHHHhhcCCcccHHHHHHHHhcCC---ChhhHhHhhhhcccCCCCCHHHHHHHHhhc--c
Q 036903           83 ALRVLGSFLHR-KSKLDWENALENLKRSSDFEIYDVLKISYNEL---NPEEKSLFLDIACFFAGEDKNLVTKILDDS--N  156 (323)
Q Consensus        83 Ai~~ig~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L---~~~~k~cfl~~s~fp~~~~~~~l~~~w~~~--g  156 (323)
                      ++..++..+.. .+...+   .+.+..    .+...+.-.+..+   ++..+..+..++.  .......+.......  |
T Consensus       241 ~l~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~  311 (350)
T 2qen_A          241 WLVVFGVEYLRNGDFGRA---MKRTLE----VAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKGTK  311 (350)
T ss_dssp             HHHHHHHHHHHHCCHHHH---HHHHHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhccccHhHH---HHHHHH----HHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCC
Confidence            99999876532 232222   111110    1111111122222   7788889888887  234555555544111  1


Q ss_pred             h-------HHHHhhhCCcceEcCCCeEEe-cHHHHHHHH
Q 036903          157 Y-------VLNVLVDKSLLRISRYNKLQM-HDLLQEMGR  187 (323)
Q Consensus       157 ~-------~l~~L~~~~ll~~~~~~~~~m-h~lv~~~~~  187 (323)
                      .       +++.|.+.+++... .+.|++ |++++++.+
T Consensus       312 ~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~  349 (350)
T 2qen_A          312 IPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR  349 (350)
T ss_dssp             CCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence            1       89999999999876 466765 778887753

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.98  E-value=1e-05  Score=81.54  Aligned_cols=69  Identities=19%  Similarity=0.243  Sum_probs=36.8

Q ss_pred             CchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCC--ccCcCCCceeEEecCCCCCCCCC--CCC-CCCceEEEcCCCc
Q 036903          239 GSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQG--LDYLPEELTYLHWHGYPLRTLPT--NLI-TDKLVVLNLPCSN  313 (323)
Q Consensus       239 ~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~--i~~L~~~Lr~L~l~~~~i~~LP~--~i~-L~~L~~L~l~~~~  313 (323)
                      .+..|.++++|++|+|++|.+.        ...|..  ++.++ +|++|+|++|.+..++.  .++ |++|++|++++|.
T Consensus        89 ~p~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A           89 HPDAFQGLFHLFELRLYFCGLS--------DAVLKDGYFRNLK-ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             CTTSSCSCSSCCCEECTTCCCS--------SCCSTTCCCSSCS-SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred             CHhHccCCcccCEeeCcCCCCC--------cccccCccccccC-CCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence            3455556666666666665541        122332  55565 66666666665555432  344 6666666666665


Q ss_pred             ccc
Q 036903          314 VEL  316 (323)
Q Consensus       314 i~~  316 (323)
                      ++.
T Consensus       160 i~~  162 (844)
T 3j0a_A          160 IFL  162 (844)
T ss_dssp             CCC
T ss_pred             CCe
Confidence            543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.98  E-value=6.1e-06  Score=77.98  Aligned_cols=89  Identities=17%  Similarity=0.097  Sum_probs=68.9

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCcc-CcCCCceeEEecCCCCCCCCCCCC
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLD-YLPEELTYLHWHGYPLRTLPTNLI  300 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~-~L~~~Lr~L~l~~~~i~~LP~~i~  300 (323)
                      .++.+.+..+.+  ..+.+..|.++++|+.|+|++|.+.        ...|..+. .++ +|++|+|++|.+..+|....
T Consensus       121 ~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~--------~~~~~~l~~~l~-~L~~L~Ls~N~l~~~~~~~~  189 (487)
T 3oja_A          121 GKKNIYLANNKI--TMLRDLDEGCRSRVQYLDLKLNEID--------TVNFAELAASSD-TLEHLNLQYNFIYDVKGQVV  189 (487)
T ss_dssp             SCEEEECCSSCC--CSGGGBCGGGGSSEEEEECTTSCCC--------EEEGGGGGGGTT-TCCEEECTTSCCCEEECCCC
T ss_pred             CCCEEECCCCCC--CCCCchhhcCCCCCCEEECCCCCCC--------CcChHHHhhhCC-cccEEecCCCcccccccccc
Confidence            345554444433  2344567788999999999999872        33566665 788 99999999999999988777


Q ss_pred             CCCceEEEcCCCccccccccc
Q 036903          301 TDKLVVLNLPCSNVELLWEEK  321 (323)
Q Consensus       301 L~~L~~L~l~~~~i~~lP~~i  321 (323)
                      +.+|++|+|++|.++.+|.++
T Consensus       190 l~~L~~L~Ls~N~l~~~~~~~  210 (487)
T 3oja_A          190 FAKLKTLDLSSNKLAFMGPEF  210 (487)
T ss_dssp             CTTCCEEECCSSCCCEECGGG
T ss_pred             CCCCCEEECCCCCCCCCCHhH
Confidence            999999999999999988754

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.96  E-value=1.6e-05  Score=76.21  Aligned_cols=40  Identities=15%  Similarity=0.312  Sum_probs=35.0

Q ss_pred             CceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccccc
Q 036903          281 ELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       281 ~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      +|++|++++|.++.+|..+. +++|++|++++|+++.+|.+
T Consensus       451 ~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~  491 (562)
T 3a79_B          451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG  491 (562)
T ss_dssp             TCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred             cCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence            88888888888889998886 88999999999988888875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.96  E-value=1.1e-05  Score=78.33  Aligned_cols=83  Identities=22%  Similarity=0.175  Sum_probs=55.3

Q ss_pred             ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI  300 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~  300 (323)
                      ..++.+.+..+.+..+    ..|..+++|+.|+|++|.+         ..++. +..++ +|++|+|++|.+..+|. +.
T Consensus       131 ~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l---------~~~~~-l~~l~-~L~~L~Ls~N~i~~l~~-l~  194 (605)
T 1m9s_A          131 PQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQI---------SDIVP-LAGLT-KLQNLYLSKNHISDLRA-LA  194 (605)
T ss_dssp             TTCSEEECCSSCCCCC----GGGGSCTTCSEEECCSSCC---------CCCGG-GTTCT-TCCEEECCSSCCCBCGG-GT
T ss_pred             CccCEEECCCCccCCc----hhhcccCCCCEEECcCCcC---------CCchh-hccCC-CCCEEECcCCCCCCChH-Hc
Confidence            3455555544443322    4567777777787777766         33433 77777 88888888888877764 44


Q ss_pred             -CCCceEEEcCCCccccccc
Q 036903          301 -TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       301 -L~~L~~L~l~~~~i~~lP~  319 (323)
                       |.+|+.|+|++|.+...|.
T Consensus       195 ~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          195 GLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             TCTTCSEEECCSEEEECCCC
T ss_pred             cCCCCCEEEccCCcCcCCcc
Confidence             8888888888887766654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.95  E-value=2.6e-06  Score=75.42  Aligned_cols=45  Identities=18%  Similarity=0.048  Sum_probs=38.1

Q ss_pred             cCcCCCceeEEecCCCCCCC-CCCCC-C---CCceEEEcCCCccccccccc
Q 036903          276 DYLPEELTYLHWHGYPLRTL-PTNLI-T---DKLVVLNLPCSNVELLWEEK  321 (323)
Q Consensus       276 ~~L~~~Lr~L~l~~~~i~~L-P~~i~-L---~~L~~L~l~~~~i~~lP~~i  321 (323)
                      +.++ +|++|+|++|.+..+ |..+. +   ++|++|++++|.++.+|.++
T Consensus       221 ~~l~-~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~  270 (310)
T 4glp_A          221 AAGV-QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL  270 (310)
T ss_dssp             HHTC-CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC
T ss_pred             hcCC-CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh
Confidence            5567 999999999999887 87775 5   69999999999999998864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=97.91  E-value=1.6e-05  Score=74.60  Aligned_cols=88  Identities=18%  Similarity=0.178  Sum_probs=58.9

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC-CCCCC
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL-PTNLI  300 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L-P~~i~  300 (323)
                      .++.+.+..+.+.  .+....|.++++|+.|+|++|.+.        ...+..+..++ +|++|+|++|.+..+ |..+.
T Consensus       225 ~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~--------~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~  293 (477)
T 2id5_A          225 NLTSLSITHCNLT--AVPYLAVRHLVYLRFLNLSYNPIS--------TIEGSMLHELL-RLQEIQLVGGQLAVVEPYAFR  293 (477)
T ss_dssp             CCSEEEEESSCCC--SCCHHHHTTCTTCCEEECCSSCCC--------EECTTSCTTCT-TCCEEECCSSCCSEECTTTBT
T ss_pred             cccEEECcCCccc--ccCHHHhcCccccCeeECCCCcCC--------ccChhhccccc-cCCEEECCCCccceECHHHhc
Confidence            3444444433322  344566788888888888888762        22334577777 888888888877766 44565


Q ss_pred             -CCCceEEEcCCCcccccccc
Q 036903          301 -TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       301 -L~~L~~L~l~~~~i~~lP~~  320 (323)
                       +.+|+.|++++|.++.+|.+
T Consensus       294 ~l~~L~~L~L~~N~l~~~~~~  314 (477)
T 2id5_A          294 GLNYLRVLNVSGNQLTTLEES  314 (477)
T ss_dssp             TCTTCCEEECCSSCCSCCCGG
T ss_pred             CcccCCEEECCCCcCceeCHh
Confidence             88888888888888777764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.90  E-value=1.4e-05  Score=77.61  Aligned_cols=84  Identities=19%  Similarity=0.196  Sum_probs=68.4

Q ss_pred             cceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC
Q 036903          220 TDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL  299 (323)
Q Consensus       220 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i  299 (323)
                      ...++.+.+..+.+..+    +.+..+++|+.|+|++|.+         ..+ ..+..++ +|++|+|++|.+..+|. +
T Consensus       108 l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l---------~~l-~~l~~l~-~L~~L~Ls~N~l~~~~~-l  171 (605)
T 1m9s_A          108 LKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKI---------TDI-TVLSRLT-KLDTLSLEDNQISDIVP-L  171 (605)
T ss_dssp             CTTCCEEECTTSCCCCC----GGGGGCTTCSEEECCSSCC---------CCC-GGGGSCT-TCSEEECCSSCCCCCGG-G
T ss_pred             CCCCCEEEecCCCCCCC----ccccCCCccCEEECCCCcc---------CCc-hhhcccC-CCCEEECcCCcCCCchh-h
Confidence            44566776665554432    4588999999999999987         344 5788999 99999999999999987 7


Q ss_pred             C-CCCceEEEcCCCccccccc
Q 036903          300 I-TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       300 ~-L~~L~~L~l~~~~i~~lP~  319 (323)
                      . +.+|+.|+|++|.+..+|.
T Consensus       172 ~~l~~L~~L~Ls~N~i~~l~~  192 (605)
T 1m9s_A          172 AGLTKLQNLYLSKNHISDLRA  192 (605)
T ss_dssp             TTCTTCCEEECCSSCCCBCGG
T ss_pred             ccCCCCCEEECcCCCCCCChH
Confidence            6 9999999999999988864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=97.87  E-value=1.1e-05  Score=75.48  Aligned_cols=66  Identities=17%  Similarity=0.189  Sum_probs=53.0

Q ss_pred             hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccccc
Q 036903          242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~  319 (323)
                      .+..+++|++|++++|.+         ..+|. ++.++ +|++|++++|.+..+|. ++ +++|++|++++|.++.+|.
T Consensus        63 ~~~~l~~L~~L~Ls~n~l---------~~~~~-~~~l~-~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~  129 (466)
T 1o6v_A           63 GVEYLNNLTQINFSNNQL---------TDITP-LKNLT-KLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP  129 (466)
T ss_dssp             TGGGCTTCCEEECCSSCC---------CCCGG-GTTCT-TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred             chhhhcCCCEEECCCCcc---------CCchh-hhccc-cCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH
Confidence            367788888888888876         45554 78888 88888888888888887 66 8888888888888877764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.85  E-value=1.2e-05  Score=75.20  Aligned_cols=79  Identities=28%  Similarity=0.277  Sum_probs=64.5

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-  300 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-  300 (323)
                      .++.+.+....+..+    +.|..+++|++|++++|.+         ..+|  ++.++ +|++|++++|.+..+|  ++ 
T Consensus        43 ~L~~L~Ls~n~l~~~----~~l~~l~~L~~L~Ls~n~l---------~~~~--~~~l~-~L~~L~Ls~N~l~~~~--~~~  104 (457)
T 3bz5_A           43 TLTSLDCHNSSITDM----TGIEKLTGLTKLICTSNNI---------TTLD--LSQNT-NLTYLACDSNKLTNLD--VTP  104 (457)
T ss_dssp             TCCEEECCSSCCCCC----TTGGGCTTCSEEECCSSCC---------SCCC--CTTCT-TCSEEECCSSCCSCCC--CTT
T ss_pred             CCCEEEccCCCcccC----hhhcccCCCCEEEccCCcC---------CeEc--cccCC-CCCEEECcCCCCceee--cCC
Confidence            456665555544332    2688999999999999987         4455  88999 9999999999999987  76 


Q ss_pred             CCCceEEEcCCCcccccc
Q 036903          301 TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       301 L~~L~~L~l~~~~i~~lP  318 (323)
                      +++|++|++++|.++.+|
T Consensus       105 l~~L~~L~L~~N~l~~l~  122 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTKLD  122 (457)
T ss_dssp             CTTCCEEECCSSCCSCCC
T ss_pred             CCcCCEEECCCCcCCeec
Confidence            999999999999998876

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=97.84  E-value=1e-05  Score=72.55  Aligned_cols=65  Identities=18%  Similarity=0.207  Sum_probs=31.9

Q ss_pred             hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCC-CCCC-CCCceEEEcCCCccccc
Q 036903          242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLP-TNLI-TDKLVVLNLPCSNVELL  317 (323)
Q Consensus       242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP-~~i~-L~~L~~L~l~~~~i~~l  317 (323)
                      .+..+++|+.|++++|.+         ..+| .+..++ +|++|++++|.+...+ ..++ +++|++|++++|.++.+
T Consensus       260 ~~~~l~~L~~L~l~~n~l---------~~~~-~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          260 AVKDLTKLKMLNVGSNQI---------SDIS-VLNNLS-QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             GGTTCTTCCEEECCSSCC---------CCCG-GGGGCT-TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred             hHhcCCCcCEEEccCCcc---------CCCh-hhcCCC-CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence            455556666666666554         2222 244444 5555555555544333 2233 55555555555554444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.84  E-value=1.2e-07  Score=78.47  Aligned_cols=65  Identities=20%  Similarity=0.104  Sum_probs=41.5

Q ss_pred             hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCC--CCC-CCCceEEEcCCCcccc
Q 036903          241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPT--NLI-TDKLVVLNLPCSNVEL  316 (323)
Q Consensus       241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~--~i~-L~~L~~L~l~~~~i~~  316 (323)
                      ..+..+++|+.|++++|.+         ..+| .+..++ +|++|++++|.+..+|.  .+. +++|++|++++|.+..
T Consensus        87 ~~~~~~~~L~~L~L~~N~l---------~~l~-~~~~l~-~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A           87 NLDAVADTLEELWISYNQI---------ASLS-GIEKLV-NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SHHHHHHHCSEEEEEEEEC---------CCHH-HHHHHH-HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             chhhcCCcCCEEECcCCcC---------CcCC-ccccCC-CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            3445556677777777765         3344 466666 77777777777776654  444 7777777777776643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.84  E-value=4.1e-05  Score=74.45  Aligned_cols=37  Identities=24%  Similarity=0.217  Sum_probs=17.6

Q ss_pred             CceeEEecCCCCCCCCCCCCCCCceEEEcCCCccccccc
Q 036903          281 ELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       281 ~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~lP~  319 (323)
                      +|++|++++|.+..+|..  +++|++|++++|.++.+|.
T Consensus       122 ~L~~L~L~~N~l~~lp~~--l~~L~~L~Ls~N~l~~l~~  158 (622)
T 3g06_A          122 GLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLASLPA  158 (622)
T ss_dssp             TCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSCCCC
T ss_pred             CcCEEECCCCCCCcCCCC--CCCCCEEECcCCcCCCcCC
Confidence            344444444444444432  2455555666555555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.77  E-value=4.9e-05  Score=71.08  Aligned_cols=80  Identities=15%  Similarity=0.186  Sum_probs=52.6

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-  300 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-  300 (323)
                      .++.+.+..+.+..  ++  .|.++++|++|++++|.+         ..+|..+   . +|++|++++|.+..+| .++ 
T Consensus       132 ~L~~L~L~~n~l~~--lp--~~~~l~~L~~L~l~~N~l---------~~lp~~~---~-~L~~L~L~~n~l~~l~-~~~~  193 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK--LP--ELQNSSFLKIIDVDNNSL---------KKLPDLP---P-SLEFIAAGNNQLEELP-ELQN  193 (454)
T ss_dssp             TCCEEECCSSCCSS--CC--CCTTCTTCCEEECCSSCC---------SCCCCCC---T-TCCEEECCSSCCSSCC-CCTT
T ss_pred             CCCEEECcCCCCCC--Cc--ccCCCCCCCEEECCCCcC---------cccCCCc---c-cccEEECcCCcCCcCc-cccC
Confidence            45555555444433  22  478888888888888876         3455443   3 7777777777777777 455 


Q ss_pred             CCCceEEEcCCCccccccc
Q 036903          301 TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       301 L~~L~~L~l~~~~i~~lP~  319 (323)
                      +++|++|++++|.++.+|.
T Consensus       194 l~~L~~L~l~~N~l~~l~~  212 (454)
T 1jl5_A          194 LPFLTAIYADNNSLKKLPD  212 (454)
T ss_dssp             CTTCCEEECCSSCCSSCCC
T ss_pred             CCCCCEEECCCCcCCcCCC
Confidence            7777777777777766654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.75  E-value=5.3e-05  Score=72.82  Aligned_cols=62  Identities=18%  Similarity=0.148  Sum_probs=41.9

Q ss_pred             CCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCc-------eEEEcCCCccccc
Q 036903          245 NMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKL-------VVLNLPCSNVELL  317 (323)
Q Consensus       245 ~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L-------~~L~l~~~~i~~l  317 (323)
                      .+++|+.|+|++|.+         ..+|. +.  + +|++|+|++|.|+.+|. +.- +|       ++|+|++|.|+.+
T Consensus       158 ~l~~L~~L~Ls~N~L---------~~lp~-l~--~-~L~~L~Ls~N~L~~lp~-~~~-~L~~~~~~L~~L~Ls~N~l~~l  222 (571)
T 3cvr_A          158 LPTSLEVLSVRNNQL---------TFLPE-LP--E-SLEALDVSTNLLESLPA-VPV-RNHHSEETEIFFRCRENRITHI  222 (571)
T ss_dssp             CCTTCCEEECCSSCC---------SCCCC-CC--T-TCCEEECCSSCCSSCCC-CC---------CCEEEECCSSCCCCC
T ss_pred             cCCCcCEEECCCCCC---------CCcch-hh--C-CCCEEECcCCCCCchhh-HHH-hhhcccccceEEecCCCcceec
Confidence            345677777777665         44666 54  5 78888888888888877 421 44       8888888888888


Q ss_pred             cccc
Q 036903          318 WEEK  321 (323)
Q Consensus       318 P~~i  321 (323)
                      |.++
T Consensus       223 p~~l  226 (571)
T 3cvr_A          223 PENI  226 (571)
T ss_dssp             CGGG
T ss_pred             CHHH
Confidence            8754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.73  E-value=4.6e-05  Score=74.05  Aligned_cols=34  Identities=26%  Similarity=0.255  Sum_probs=15.3

Q ss_pred             CceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcc
Q 036903          281 ELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNV  314 (323)
Q Consensus       281 ~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i  314 (323)
                      +|++|+|++|.+..+|..++ +++|+.|+|++|.+
T Consensus       262 ~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          262 GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             TCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred             cCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence            44444444444444444443 44444444444443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.68  E-value=7.5e-05  Score=71.80  Aligned_cols=56  Identities=13%  Similarity=0.163  Sum_probs=41.9

Q ss_pred             CCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCc-------eeEEecCCCCCCCCCCCC-CCCceEEEcCCCccc
Q 036903          247 TNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEEL-------TYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       247 ~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~L-------r~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~  315 (323)
                      ++|+.|+|++|.+         ..+|. +..   +|       ++|+|++|.|+.+|..+. +++|++|+|++|.+.
T Consensus       180 ~~L~~L~Ls~N~L---------~~lp~-~~~---~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          180 ESLEALDVSTNLL---------ESLPA-VPV---RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             TTCCEEECCSSCC---------SSCCC-CC-----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred             CCCCEEECcCCCC---------Cchhh-HHH---hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence            7888888888876         45665 332   55       888888888888888876 888888888888774

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.60  E-value=5.9e-05  Score=67.86  Aligned_cols=73  Identities=14%  Similarity=0.161  Sum_probs=49.1

Q ss_pred             cCchhhhCCC-CceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecC-CCCCCCCCCC-C-CCCceEEEcCCCc
Q 036903          238 LGSRAFENMT-NLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHG-YPLRTLPTNL-I-TDKLVVLNLPCSN  313 (323)
Q Consensus       238 ~~~~~~~~~~-~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~-~~i~~LP~~i-~-L~~L~~L~l~~~~  313 (323)
                      +....|..+. .+++|+|++|.+         ..+|..+.... +|+.|++++ +.++.+|... + +.+|++|++++|+
T Consensus       144 l~~~~f~~~~~~l~~L~L~~N~i---------~~i~~~~f~~~-~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~  213 (350)
T 4ay9_X          144 IERNSFVGLSFESVILWLNKNGI---------QEIHNSAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  213 (350)
T ss_dssp             ECTTSSTTSBSSCEEEECCSSCC---------CEECTTSSTTE-EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred             ccccchhhcchhhhhhccccccc---------cCCChhhcccc-chhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence            3444555543 577788887776         56666666666 777777764 4677777653 5 7777777777777


Q ss_pred             ccccccc
Q 036903          314 VELLWEE  320 (323)
Q Consensus       314 i~~lP~~  320 (323)
                      |+.+|.+
T Consensus       214 l~~lp~~  220 (350)
T 4ay9_X          214 IHSLPSY  220 (350)
T ss_dssp             CCCCCSS
T ss_pred             cCccChh
Confidence            7777764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.60  E-value=8.9e-05  Score=66.69  Aligned_cols=87  Identities=14%  Similarity=0.126  Sum_probs=51.8

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCce-eEEecCCCCCCCCCC-
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELT-YLHWHGYPLRTLPTN-  298 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr-~L~l~~~~i~~LP~~-  298 (323)
                      .++.+.+..+.+  -.+...+|.++++|+.|+|++|.+.        ..+|. .+..|+ +|. .+.+.++++..+|.. 
T Consensus        31 ~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~--------~~i~~~~f~~L~-~l~~~l~~~~N~l~~l~~~~   99 (350)
T 4ay9_X           31 NAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVL--------EVIEADVFSNLP-KLHEIRIEKANNLLYINPEA   99 (350)
T ss_dssp             TCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTTC--------CEECTTSBCSCT-TCCEEEEEEETTCCEECTTS
T ss_pred             CCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCCC--------CccChhHhhcch-hhhhhhcccCCcccccCchh
Confidence            355555555544  3466778999999999999998862        22332 345555 433 344445556665433 


Q ss_pred             CC-CCCceEEEcCCCccccccc
Q 036903          299 LI-TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       299 i~-L~~L~~L~l~~~~i~~lP~  319 (323)
                      ++ |++|++|++++|.++.+|.
T Consensus       100 f~~l~~L~~L~l~~n~l~~~~~  121 (350)
T 4ay9_X          100 FQNLPNLQYLLISNTGIKHLPD  121 (350)
T ss_dssp             BCCCTTCCEEEEEEECCSSCCC
T ss_pred             hhhccccccccccccccccCCc
Confidence            34 6666666666666655554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.53  E-value=0.00018  Score=67.27  Aligned_cols=64  Identities=16%  Similarity=0.025  Sum_probs=35.6

Q ss_pred             hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccccc
Q 036903          242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~  319 (323)
                      .|.++++|+.|++++|.+         ..+|...   + +|++|++++|.+..+|. ++ +.+|++|++++|.++.+|.
T Consensus       190 ~~~~l~~L~~L~l~~N~l---------~~l~~~~---~-~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~  254 (454)
T 1jl5_A          190 ELQNLPFLTAIYADNNSL---------KKLPDLP---L-SLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPD  254 (454)
T ss_dssp             CCTTCTTCCEEECCSSCC---------SSCCCCC---T-TCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCS
T ss_pred             cccCCCCCCEEECCCCcC---------CcCCCCc---C-cccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCcccc
Confidence            367777777777777765         2333322   2 55555555555555553 43 5555555555555555443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.45  E-value=6e-05  Score=65.21  Aligned_cols=64  Identities=22%  Similarity=0.177  Sum_probs=51.9

Q ss_pred             hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CC--CceEEEcCCCccc
Q 036903          244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TD--KLVVLNLPCSNVE  315 (323)
Q Consensus       244 ~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~--~L~~L~l~~~~i~  315 (323)
                      .++++|+.|+|++|.+.      ....+|..++.++ +|++|+|++|.+..+. .+. |.  +|++|+|.+|.+.
T Consensus       167 ~~l~~L~~L~Ls~N~l~------~l~~l~~~~~~l~-~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLY------RLDDMSSIVQKAP-NLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HHCTTCCEEECTTSCCC------CCGGGTTHHHHST-TCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTG
T ss_pred             hhCCCCCEEECCCCCCC------CCccchhHHhhCC-CCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCc
Confidence            67899999999999883      1235667778899 9999999999999883 343 55  9999999999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.39  E-value=3.8e-05  Score=69.98  Aligned_cols=95  Identities=18%  Similarity=0.141  Sum_probs=66.8

Q ss_pred             ceeEEEEeecCCccccc---cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC--
Q 036903          221 DVIAGIFLDLSKIRDIH---LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL--  295 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~---~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L--  295 (323)
                      ..++.+.+..+.+....   +.+..+.++++|++|+|++|.+..    .....+|..+..++ +|++|+|++|.+...  
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~----~g~~~l~~~l~~~~-~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH----LGSSALAIALKSWP-NLRELGLNDCLLSARGA  261 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH----HHHHHHHHHGGGCT-TCCEEECTTCCCCHHHH
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc----HHHHHHHHHHccCC-CcCEEECCCCCCchhhH
Confidence            36667766655443211   233377889999999999987610    00144677888888 999999999988753  


Q ss_pred             ---CCCC--C-CCCceEEEcCCCcccc-----cccc
Q 036903          296 ---PTNL--I-TDKLVVLNLPCSNVEL-----LWEE  320 (323)
Q Consensus       296 ---P~~i--~-L~~L~~L~l~~~~i~~-----lP~~  320 (323)
                         |..+  + +++|++|+|++|.+..     +|..
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~  297 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV  297 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred             HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence               6665  4 8899999999998876     7654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.29  E-value=2.6e-05  Score=71.05  Aligned_cols=95  Identities=14%  Similarity=-0.032  Sum_probs=68.9

Q ss_pred             ccceeEEEEeecCCccc--cccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCc--cCcCCCceeEEecCCCCCC
Q 036903          219 GTDVIAGIFLDLSKIRD--IHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGL--DYLPEELTYLHWHGYPLRT  294 (323)
Q Consensus       219 ~~~~~~~l~~~~~~~~~--l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i--~~L~~~Lr~L~l~~~~i~~  294 (323)
                      ....++.+.+..+.+..  ....+..+.++++|+.|+|++|.+..    .....+|..+  +.++ +|++|+|++|.+..
T Consensus       214 ~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~----~~~~~l~~~l~~~~~~-~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA----RGAAAVVDAFSKLENI-GLQTLRLQYNEIEL  288 (386)
T ss_dssp             GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH----HHHHHHHHHHHTCSSC-CCCEEECCSSCCBH
T ss_pred             cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch----hhHHHHHHHHhhccCC-CeEEEECcCCcCCH
Confidence            34567777666554421  12334578899999999999998720    0001256666  4488 99999999999998


Q ss_pred             -----CCCCC-C-CCCceEEEcCCCcccccc
Q 036903          295 -----LPTNL-I-TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       295 -----LP~~i-~-L~~L~~L~l~~~~i~~lP  318 (323)
                           +|..+ . +++|++|++++|.+...+
T Consensus       289 ~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          289 DAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence                 99988 5 899999999999887544

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=97.03  E-value=0.0022  Score=58.55  Aligned_cols=153  Identities=13%  Similarity=-0.014  Sum_probs=87.3

Q ss_pred             CCceEEEEcCChhhHhh-------cCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhc------C
Q 036903           13 PGSRIIVTTRDKRVLDN-------FGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCK------G   79 (323)
Q Consensus        13 ~gs~IlvTTR~~~v~~~-------~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~------G   79 (323)
                      .+..||+||+...+...       ........+.++|++.++++++|...+........--.+....|++.|+      |
T Consensus       178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G  257 (412)
T 1w5s_A          178 NRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG  257 (412)
T ss_dssp             CBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCC
T ss_pred             ceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCC
Confidence            34458888876654311       1001122399999999999999987643111111112456788999999      9


Q ss_pred             CchhHHHHhhhh-c-----CC---ChHHHHHHHHHhhcCCcccHHHHHHHHhcCCChhhHhHhhhhcccC----CCCCHH
Q 036903           80 NPLALRVLGSFL-H-----RK---SKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIACFF----AGEDKN  146 (323)
Q Consensus        80 lPLAi~~ig~~L-~-----~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp----~~~~~~  146 (323)
                      .|..+..+.... .     ..   +...+..+......      ...+.-+++.||++.+.++..++.+.    ..+...
T Consensus       258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~  331 (412)
T 1w5s_A          258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAG  331 (412)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHH
Confidence            997655554321 1     11   23333333332210      23345567889999999998888653    124444


Q ss_pred             HHHHHHh-----hcc--------h--HHHHhhhCCcceEc
Q 036903          147 LVTKILD-----DSN--------Y--VLNVLVDKSLLRIS  171 (323)
Q Consensus       147 ~l~~~w~-----~~g--------~--~l~~L~~~~ll~~~  171 (323)
                      .+...+.     ..|        +  +++.|++.+++...
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~  371 (412)
T 1w5s_A          332 LLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK  371 (412)
T ss_dssp             HHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence            4333221     111        1  89999999999765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.01  E-value=6.8e-05  Score=66.69  Aligned_cols=83  Identities=14%  Similarity=0.081  Sum_probs=53.3

Q ss_pred             ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCC-CCCCCCCCCcccccCCCccCcCCCceeEEecCC-CCCC--CC
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLP-NRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGY-PLRT--LP  296 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~-~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~-~i~~--LP  296 (323)
                      ..++.+.+..+..  .......+.++++|+.|++++| .+       ....+|..+..++ +|++|++++| .+..  +|
T Consensus       118 ~~L~~L~L~~~~l--~~~~~~~l~~~~~L~~L~L~~~~~l-------~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~  187 (336)
T 2ast_B          118 SKLQNLSLEGLRL--SDPIVNTLAKNSNLVRLNLSGCSGF-------SEFALQTLLSSCS-RLDELNLSWCFDFTEKHVQ  187 (336)
T ss_dssp             CCCSEEECTTCBC--CHHHHHHHTTCTTCSEEECTTCBSC-------CHHHHHHHHHHCT-TCCEEECCCCTTCCHHHHH
T ss_pred             CCCCEEeCcCccc--CHHHHHHHhcCCCCCEEECCCCCCC-------CHHHHHHHHhcCC-CCCEEcCCCCCCcChHHHH
Confidence            4555554443322  1123345667788888888877 44       1123666677777 8888888888 7764  56


Q ss_pred             CCCC-CC-CceEEEcCCCc
Q 036903          297 TNLI-TD-KLVVLNLPCSN  313 (323)
Q Consensus       297 ~~i~-L~-~L~~L~l~~~~  313 (323)
                      ..++ ++ +|++|++++|.
T Consensus       188 ~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          188 VAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             HHHHHSCTTCCEEECCSCG
T ss_pred             HHHHhcccCCCEEEeCCCc
Confidence            6666 77 88888888884

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.99  E-value=5.4e-05  Score=67.36  Aligned_cols=86  Identities=20%  Similarity=0.218  Sum_probs=57.0

Q ss_pred             cceeEEEEeecC-CccccccCchhhhCCCCceEEEEeCC-CCCCCCCCCcccccCCCccCcCCCceeEEecCCC--C--C
Q 036903          220 TDVIAGIFLDLS-KIRDIHLGSRAFENMTNLRLLKFYLP-NRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYP--L--R  293 (323)
Q Consensus       220 ~~~~~~l~~~~~-~~~~l~~~~~~~~~~~~LrvL~L~~~-~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~--i--~  293 (323)
                      ...++.+.+..+ .... ......+.++++|+.|++++| .+       ....++..+..++.+|++|++++|.  +  .
T Consensus       141 ~~~L~~L~L~~~~~l~~-~~l~~~~~~~~~L~~L~l~~~~~l-------~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~  212 (336)
T 2ast_B          141 NSNLVRLNLSGCSGFSE-FALQTLLSSCSRLDELNLSWCFDF-------TEKHVQVAVAHVSETITQLNLSGYRKNLQKS  212 (336)
T ss_dssp             CTTCSEEECTTCBSCCH-HHHHHHHHHCTTCCEEECCCCTTC-------CHHHHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred             CCCCCEEECCCCCCCCH-HHHHHHHhcCCCCCEEcCCCCCCc-------ChHHHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence            445666655544 2211 112345678888999999888 65       2223566666666588889998884  3  4


Q ss_pred             CCCCCCC-CCCceEEEcCCCc
Q 036903          294 TLPTNLI-TDKLVVLNLPCSN  313 (323)
Q Consensus       294 ~LP~~i~-L~~L~~L~l~~~~  313 (323)
                      .+|..++ +++|++|++++|.
T Consensus       213 ~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          213 DLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             HHHHHHHHCTTCSEEECTTCT
T ss_pred             HHHHHHhhCCCCCEEeCCCCC
Confidence            5677766 8889999998887

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=96.73  E-value=0.00037  Score=62.85  Aligned_cols=60  Identities=13%  Similarity=0.080  Sum_probs=37.5

Q ss_pred             CCceEEEEeCCCCCCCCCCCcccccCC----CccCc-CCCceeEEecCCCCCCCCCC-----CC-C-CCceEEEcCCCcc
Q 036903          247 TNLRLLKFYLPNRRGDPIMSSKVHLDQ----GLDYL-PEELTYLHWHGYPLRTLPTN-----LI-T-DKLVVLNLPCSNV  314 (323)
Q Consensus       247 ~~LrvL~L~~~~~~~~~~~~~~~~lp~----~i~~L-~~~Lr~L~l~~~~i~~LP~~-----i~-L-~~L~~L~l~~~~i  314 (323)
                      ++|+.|+|++|.+.        ...+.    .+..+ + +|++|++++|.+...+..     +. + .+|++|++++|.+
T Consensus        80 ~~L~~L~Ls~n~l~--------~~~~~~l~~~l~~~~~-~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  150 (362)
T 3goz_A           80 ANVTSLNLSGNFLS--------YKSSDELVKTLAAIPF-TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL  150 (362)
T ss_dssp             TTCCEEECCSSCGG--------GSCHHHHHHHHHTSCT-TCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred             CCccEEECcCCcCC--------hHHHHHHHHHHHhCCC-CccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence            77777777777651        11122    23333 5 788888888877766553     11 2 4788888888877


Q ss_pred             c
Q 036903          315 E  315 (323)
Q Consensus       315 ~  315 (323)
                      .
T Consensus       151 ~  151 (362)
T 3goz_A          151 G  151 (362)
T ss_dssp             G
T ss_pred             C
Confidence            6

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.48  E-value=0.0046  Score=47.11  Aligned_cols=51  Identities=24%  Similarity=0.221  Sum_probs=40.8

Q ss_pred             EEEEeCCCCCCCCCCCccc--ccCCCccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCc
Q 036903          251 LLKFYLPNRRGDPIMSSKV--HLDQGLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSN  313 (323)
Q Consensus       251 vL~L~~~~~~~~~~~~~~~--~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~  313 (323)
                      +++.++.++         +  .+|..+   +.+|++|+|++|.|..||..+ . +.+|++|+|.+|.
T Consensus        12 ~v~Cs~~~L---------~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGL---------TWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCC---------CTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCC---------ccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            566666655         4  677654   448999999999999999886 5 9999999999874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=96.36  E-value=0.00069  Score=61.06  Aligned_cols=88  Identities=18%  Similarity=0.169  Sum_probs=61.8

Q ss_pred             eEEEEeecCCcccccc--CchhhhCCC-CceEEEEeCCCCCCCCCCCcccccCCCccCc-----CCCceeEEecCCCCCC
Q 036903          223 IAGIFLDLSKIRDIHL--GSRAFENMT-NLRLLKFYLPNRRGDPIMSSKVHLDQGLDYL-----PEELTYLHWHGYPLRT  294 (323)
Q Consensus       223 ~~~l~~~~~~~~~l~~--~~~~~~~~~-~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L-----~~~Lr~L~l~~~~i~~  294 (323)
                      ++.+.+..+.+.....  ....|.+++ +|+.|+|++|.+.        ..-+..+..+     + +|++|+|++|.+..
T Consensus        24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~--------~~~~~~l~~~l~~~~~-~L~~L~Ls~n~l~~   94 (362)
T 3goz_A           24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG--------FKNSDELVQILAAIPA-NVTSLNLSGNFLSY   94 (362)
T ss_dssp             CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG--------GSCHHHHHHHHHTSCT-TCCEEECCSSCGGG
T ss_pred             ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC--------HHHHHHHHHHHhccCC-CccEEECcCCcCCh
Confidence            6666555444322211  116788898 8999999999872        2223445554     6 99999999999986


Q ss_pred             CCCC-----CC-C-CCceEEEcCCCccccccc
Q 036903          295 LPTN-----LI-T-DKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       295 LP~~-----i~-L-~~L~~L~l~~~~i~~lP~  319 (323)
                      .+..     +. + .+|++|++++|.+...+.
T Consensus        95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  126 (362)
T 3goz_A           95 KSSDELVKTLAAIPFTITVLDLGWNDFSSKSS  126 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             HHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence            6554     32 4 899999999999987664

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=96.35  E-value=0.00057  Score=63.41  Aligned_cols=64  Identities=22%  Similarity=0.153  Sum_probs=34.7

Q ss_pred             CceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC-CC----C-CC-CCCceEEEcCCCcccc
Q 036903          248 NLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL-PT----N-LI-TDKLVVLNLPCSNVEL  316 (323)
Q Consensus       248 ~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L-P~----~-i~-L~~L~~L~l~~~~i~~  316 (323)
                      +|+.|++++|.+...    ....+|..+..++ +|++|++++|.+... +.    . .. +.+|++|++++|.+..
T Consensus        86 ~L~~L~L~~n~i~~~----~~~~l~~~l~~~~-~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  156 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGA----GCGVLSSTLRTLP-TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA  156 (461)
T ss_dssp             CCCEEECTTSCCBGG----GHHHHHHHTTSCT-TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             ceeEEEccCCCCCHH----HHHHHHHHHccCC-ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence            566777766665100    0013455666666 777777776665422 11    1 12 4467777777776553

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=96.26  E-value=0.00038  Score=64.58  Aligned_cols=87  Identities=16%  Similarity=-0.006  Sum_probs=59.2

Q ss_pred             ceeEEEEeecCCcccc--ccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCcc-CcC---CCceeEEecCCCCC-
Q 036903          221 DVIAGIFLDLSKIRDI--HLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLD-YLP---EELTYLHWHGYPLR-  293 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l--~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~-~L~---~~Lr~L~l~~~~i~-  293 (323)
                      ..++.+.+..+.+...  ......+..+++|++|++++|.+.        ..-+..+. .++   .+|++|++++|.+. 
T Consensus        28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~--------~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~   99 (461)
T 1z7x_W           28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG--------DVGVHCVLQGLQTPSCKIQKLSLQNCCLTG   99 (461)
T ss_dssp             TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH--------HHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred             CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC--------hHHHHHHHHHHhhCCCceeEEEccCCCCCH
Confidence            3566666665554322  133466788899999999998761        11121221 222   15999999999887 


Q ss_pred             ----CCCCCCC-CCCceEEEcCCCccc
Q 036903          294 ----TLPTNLI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       294 ----~LP~~i~-L~~L~~L~l~~~~i~  315 (323)
                          .+|..+. +++|++|++++|.+.
T Consensus       100 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~  126 (461)
T 1z7x_W          100 AGCGVLSSTLRTLPTLQELHLSDNLLG  126 (461)
T ss_dssp             GGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             HHHHHHHHHHccCCceeEEECCCCcCc
Confidence                5688887 999999999999875

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.22  E-value=0.01  Score=52.56  Aligned_cols=85  Identities=13%  Similarity=0.124  Sum_probs=64.0

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCce-eEEecCCCCCCCCCC-
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELT-YLHWHGYPLRTLPTN-  298 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr-~L~l~~~~i~~LP~~-  298 (323)
                      .++.+.+.  ......+...+|.++.+|+.|++.++ +         ..+++ .+..+. +|+ .+.+.+ +++.++.. 
T Consensus       227 ~L~~l~L~--~n~i~~I~~~aF~~~~~L~~l~l~~n-i---------~~I~~~aF~~~~-~L~~~l~l~~-~l~~I~~~a  292 (329)
T 3sb4_A          227 NLVSLDIS--KTNATTIPDFTFAQKKYLLKIKLPHN-L---------KTIGQRVFSNCG-RLAGTLELPA-SVTAIEFGA  292 (329)
T ss_dssp             TCCEEECT--TBCCCEECTTTTTTCTTCCEEECCTT-C---------CEECTTTTTTCT-TCCEEEEECT-TCCEECTTT
T ss_pred             CCeEEECC--CCCcceecHhhhhCCCCCCEEECCcc-c---------ceehHHHhhCCh-hccEEEEEcc-cceEEchhh
Confidence            44454333  22234567788999999999999876 4         44544 577888 899 999988 78888755 


Q ss_pred             CC-CCCceEEEcCCCcccccccc
Q 036903          299 LI-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       299 i~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      +. +.+|+.|++.+++++.++.+
T Consensus       293 F~~c~~L~~l~l~~n~i~~I~~~  315 (329)
T 3sb4_A          293 FMGCDNLRYVLATGDKITTLGDE  315 (329)
T ss_dssp             TTTCTTEEEEEECSSCCCEECTT
T ss_pred             hhCCccCCEEEeCCCccCccchh
Confidence            55 99999999999999888874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=95.83  E-value=0.0012  Score=59.90  Aligned_cols=90  Identities=14%  Similarity=0.066  Sum_probs=57.4

Q ss_pred             ceeEEEEeecCCccc--cccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCC----
Q 036903          221 DVIAGIFLDLSKIRD--IHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRT----  294 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~--l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~----  294 (323)
                      ..++.+.+..+.+..  .......+...++|+.|+|++|.+...    ....++..+...+ +|++|+|++|.+..    
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~----g~~~L~~~L~~~~-~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE----GLELLAAQLDRNR-QLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHH----HHHHHHHHGGGCS-CCCEEECCSSCCCHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcH----HHHHHHHHHhcCC-CcCeEECCCCCCCHHHHH
Confidence            346666555554322  122334557788899999988876100    0013455666777 89999999888763    


Q ss_pred             -CCCCCC-CCCceEEEcCCCccc
Q 036903          295 -LPTNLI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       295 -LP~~i~-L~~L~~L~l~~~~i~  315 (323)
                       ++..+. .++|++|+|++|.|.
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHhCCCCCEEeccCCCCC
Confidence             344444 688999999988775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.73  E-value=0.0048  Score=53.16  Aligned_cols=79  Identities=19%  Similarity=0.145  Sum_probs=55.9

Q ss_pred             ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCC-CceeEEecCCCCC-CCCC-
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPE-ELTYLHWHGYPLR-TLPT-  297 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~-~Lr~L~l~~~~i~-~LP~-  297 (323)
                      ..++++.+..+.+..+.-.+..+.++++|+.|+|++|.+         ..+ ..++.+.. +|++|+|++|.+. .+|. 
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i---------~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~  239 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL---------KSE-RELDKIKGLKLEELWLDGNSLCDTFRDQ  239 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCC---------CSG-GGGGGGTTSCCSEEECTTSTTGGGCSSH
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCcc---------CCc-hhhhhcccCCcceEEccCCcCccccCcc
Confidence            356777777666655544456778999999999999988         222 22333321 7999999999886 4663 


Q ss_pred             ------CCC-CCCceEEEc
Q 036903          298 ------NLI-TDKLVVLNL  309 (323)
Q Consensus       298 ------~i~-L~~L~~L~l  309 (323)
                            .+. +++|+.||=
T Consensus       240 ~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          240 STYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHHHHHCTTCCEESS
T ss_pred             hhHHHHHHHHCcccCeECC
Confidence                  245 899999874

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=95.70  E-value=0.0045  Score=49.76  Aligned_cols=85  Identities=16%  Similarity=0.077  Sum_probs=53.0

Q ss_pred             cceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCc----CCCceeEEecCC-CCCC
Q 036903          220 TDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYL----PEELTYLHWHGY-PLRT  294 (323)
Q Consensus       220 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L----~~~Lr~L~l~~~-~i~~  294 (323)
                      .-.++.+-+..+.+.  ...-..+.++++|+.|+|++|...      ....+ ..|..+    + +|++|+|++| +|+.
T Consensus        60 ~~~L~~LDLs~~~It--d~GL~~L~~~~~L~~L~L~~C~~I------tD~gL-~~L~~~~~~~~-~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           60 KYKIQAIDATDSCIM--SIGFDHMEGLQYVEKIRLCKCHYI------EDGCL-ERLSQLENLQK-SMLEMEIISCGNVTD  129 (176)
T ss_dssp             CCCEEEEEEESCCCC--GGGGGGGTTCSCCCEEEEESCTTC------CHHHH-HHHHTCHHHHH-HCCEEEEESCTTCCH
T ss_pred             CceEeEEeCcCCCcc--HHHHHHhcCCCCCCEEEeCCCCcc------CHHHH-HHHHhcccccC-CCCEEEcCCCCcCCH
Confidence            335666655544332  122244678999999999999631      11111 123332    3 6999999998 5653


Q ss_pred             --CCCCCC-CCCceEEEcCCC-ccc
Q 036903          295 --LPTNLI-TDKLVVLNLPCS-NVE  315 (323)
Q Consensus       295 --LP~~i~-L~~L~~L~l~~~-~i~  315 (323)
                        +- .+. +++|++|++++| .|+
T Consensus       130 ~Gl~-~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          130 KGII-ALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HHHH-HGGGCTTCCEEEEESCTTCC
T ss_pred             HHHH-HHhcCCCCCEEECCCCCCCC
Confidence              21 234 899999999999 354

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.57  E-value=0.37  Score=43.07  Aligned_cols=149  Identities=11%  Similarity=0.030  Sum_probs=89.6

Q ss_pred             CCceEEEEcCChhhH----hhcCCCCcceEEcCCCCHHhHHHHHHHhhhc---CCCCCCChHHHHHHHHHHhc---CCch
Q 036903           13 PGSRIIVTTRDKRVL----DNFGVPNTNIYKVRGLNYSEALELFCNFAFK---QSNCPDGLFTLSKHIVGYCK---GNPL   82 (323)
Q Consensus        13 ~gs~IlvTTR~~~v~----~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~---~~~~~~~~~~~~~~i~~~c~---GlPL   82 (323)
                      .+..||+||+.....    ..........+.++|++.++..++|...+..   ....+   .+....+++.|+   |.|.
T Consensus       163 ~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r  239 (384)
T 2qby_B          163 ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDAR  239 (384)
T ss_dssp             SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHH
T ss_pred             cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHH
Confidence            678899999875321    1110011238999999999999999998632   22222   245677888888   8877


Q ss_pred             -hHHHHhhhh--c---CC-ChHHHHHHHHHhhcCCcccHHHHHHHHhcCCChhhHhHhhhhcccCCCCCHH-HHHHHHhh
Q 036903           83 -ALRVLGSFL--H---RK-SKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIACFFAGEDKN-LVTKILDD  154 (323)
Q Consensus        83 -Ai~~ig~~L--~---~~-~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~~~-~l~~~w~~  154 (323)
                       |+..+-.+.  .   .. +.+.+..+++...       ...+..+++.|+++.+..+..++....+-++. .....-..
T Consensus       240 ~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~  312 (384)
T 2qby_B          240 KAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNK  312 (384)
T ss_dssp             HHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHH
Confidence             433333322  1   12 6677777766542       24567788899988888777666511101111 11121111


Q ss_pred             cch----------HHHHhhhCCcceEc
Q 036903          155 SNY----------VLNVLVDKSLLRIS  171 (323)
Q Consensus       155 ~g~----------~l~~L~~~~ll~~~  171 (323)
                      .|.          +++.|.+.|+++..
T Consensus       313 ~g~~~~~~~~~~~~l~~L~~~gli~~~  339 (384)
T 2qby_B          313 FKQKPLSYRRFSDIISELDMFGIVKIR  339 (384)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             cCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            111          88999999999874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=95.33  E-value=0.002  Score=61.74  Aligned_cols=63  Identities=16%  Similarity=0.082  Sum_probs=40.3

Q ss_pred             CCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCC--CCCCCC-CCCceEEEcCCCccc
Q 036903          245 NMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRT--LPTNLI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       245 ~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~--LP~~i~-L~~L~~L~l~~~~i~  315 (323)
                      .+++|+.|++++|.+       ....++..+..++ +|++|++++|.+..  +|..+. +++|+.|++++|+++
T Consensus       461 ~~~~L~~L~L~~n~l-------~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          461 YSPNVRWMLLGYVGE-------SDEGLMEFSRGCP-NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             SCTTCCEEEECSCCS-------SHHHHHHHHTCCT-TCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             hCccceEeeccCCCC-------CHHHHHHHHhcCc-ccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            356666666666654       2223444456667 88888888887542  344444 788888888888754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=95.23  E-value=0.034  Score=49.09  Aligned_cols=41  Identities=20%  Similarity=0.339  Sum_probs=32.2

Q ss_pred             cCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcccccccc
Q 036903          278 LPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       278 L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      ++ +|++|+|++|+++.+|.. +. +.+|+.|++.++ ++.+|++
T Consensus       225 ~~-~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~  267 (329)
T 3sb4_A          225 MP-NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQR  267 (329)
T ss_dssp             CT-TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred             cC-CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHH
Confidence            45 888899988888888886 45 888999988776 6666653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=94.97  E-value=0.0031  Score=57.20  Aligned_cols=67  Identities=18%  Similarity=0.114  Sum_probs=50.1

Q ss_pred             CCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCC-----CCCCCC-CCCceEEEcCCCcccc
Q 036903          245 NMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRT-----LPTNLI-TDKLVVLNLPCSNVEL  316 (323)
Q Consensus       245 ~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~-----LP~~i~-L~~L~~L~l~~~~i~~  316 (323)
                      ...+|+.|+|++|.+..    .....++..+...+ +|++|+|++|.+..     |+..+. ..+|++|+|++|.|..
T Consensus       153 ~~~~L~~L~Ls~n~l~~----~~~~~l~~~L~~~~-~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTA----AGVAVLMEGLAGNT-SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             TTCCCCEEECCSSCCHH----HHHHHHHHHHHTCS-SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             cCCccceeeCCCCCCCh----HHHHHHHHHHhcCC-CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            46889999999998710    00023555667788 99999999998864     355565 7899999999998863

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=94.95  E-value=0.025  Score=46.81  Aligned_cols=78  Identities=6%  Similarity=-0.029  Sum_probs=54.2

Q ss_pred             CCCCceEEEEcCChhh-HhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHhh
Q 036903           11 FGPGSRIIVTTRDKRV-LDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGS   89 (323)
Q Consensus        11 ~~~gs~IlvTTR~~~v-~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig~   89 (323)
                      ...+..+|+||+.... ..... .....+.+++++.++..+++...+.......  -++....|++.|+|.|..+..+..
T Consensus       153 ~~~~~~~i~~t~~~~~~~~~l~-~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~~~~~~~~~  229 (250)
T 1njg_A          153 PPEHVKFLLATTDPQKLPVTIL-SRCLQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLTD  229 (250)
T ss_dssp             CCTTEEEEEEESCGGGSCHHHH-TTSEEEECCCCCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCceEEEEEeCChHhCCHHHH-HHhhhccCCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3567888888876542 22111 1246899999999999999998875432211  135578899999999999887765


Q ss_pred             hh
Q 036903           90 FL   91 (323)
Q Consensus        90 ~L   91 (323)
                      .+
T Consensus       230 ~~  231 (250)
T 1njg_A          230 QA  231 (250)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=94.86  E-value=0.0046  Score=50.06  Aligned_cols=90  Identities=13%  Similarity=0.099  Sum_probs=49.4

Q ss_pred             ceeEEEEeecCCccc--cccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEe--cCCCCCC--
Q 036903          221 DVIAGIFLDLSKIRD--IHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHW--HGYPLRT--  294 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~--l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l--~~~~i~~--  294 (323)
                      ..++.+.+..+.+..  .......+...+.|+.|+|++|.+...    ....+...+...+ .|++|+|  ++|.+..  
T Consensus        65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~----g~~~l~~~L~~n~-~L~~L~L~~~~N~i~~~g  139 (185)
T 1io0_A           65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS----GILALVEALQSNT-SLIELRIDNQSQPLGNNV  139 (185)
T ss_dssp             CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH----HHHHHHHGGGGCS-SCCEEECCCCSSCCCHHH
T ss_pred             CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH----HHHHHHHHHHhCC-CceEEEecCCCCCCCHHH
Confidence            345555444443321  112234455667777777777776200    0012445566666 7788888  6666653  


Q ss_pred             ---CCCCCC-CCCceEEEcCCCccc
Q 036903          295 ---LPTNLI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       295 ---LP~~i~-L~~L~~L~l~~~~i~  315 (323)
                         +...+. .+.|++|+|++|.+.
T Consensus       140 ~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          140 EMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCCCcCEEeccCCCCC
Confidence               333444 567788888777654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=94.76  E-value=0.003  Score=57.02  Aligned_cols=62  Identities=18%  Similarity=0.201  Sum_probs=43.1

Q ss_pred             CCCCceEEEEeCCCCCCCCCCCcccccCCC---ccCcCCCceeEEecCCCCCC-----CCCCCC-CCCceEEEcCCCccc
Q 036903          245 NMTNLRLLKFYLPNRRGDPIMSSKVHLDQG---LDYLPEELTYLHWHGYPLRT-----LPTNLI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       245 ~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~---i~~L~~~Lr~L~l~~~~i~~-----LP~~i~-L~~L~~L~l~~~~i~  315 (323)
                      .+++||+|+|.+|.+.        ...+..   ...++ +|++|+|+.|.+..     ++..+. +++|+.|++++|.|.
T Consensus       250 ~~p~Lr~L~L~~~~i~--------~~~~~~la~a~~~~-~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQ--------NVVVEMFLESDILP-QLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TCTTCCEEEEESCTTH--------HHHHHHHHHCSSGG-GCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCcCEEeCCCCCCc--------hHHHHHHHhCccCC-CCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            4788888888887761        111111   12467 88999998887765     566665 888999999888764

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.32  E-value=0.81  Score=40.59  Aligned_cols=152  Identities=13%  Similarity=0.007  Sum_probs=85.5

Q ss_pred             CCceEEEEcCChhhHhhcC----CC-CcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhc---CCchhH
Q 036903           13 PGSRIIVTTRDKRVLDNFG----VP-NTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCK---GNPLAL   84 (323)
Q Consensus        13 ~gs~IlvTTR~~~v~~~~~----~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~---GlPLAi   84 (323)
                      .+..+|+||+.......+.    .. ....+.++|++.++..+++...+........--.+....+++.++   |.|..+
T Consensus       162 ~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~  241 (386)
T 2qby_A          162 SKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRA  241 (386)
T ss_dssp             --EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             CeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHH
Confidence            3566788888664432221    00 125899999999999999998753211111112455677888887   998844


Q ss_pred             HH-Hhhhhc-----C--C-ChHHHHHHHHHhhcCCcccHHHHHHHHhcCCChhhHhHhhhhcccCC-C---CCHHHHHHH
Q 036903           85 RV-LGSFLH-----R--K-SKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIACFFA-G---EDKNLVTKI  151 (323)
Q Consensus        85 ~~-ig~~L~-----~--~-~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~-~---~~~~~l~~~  151 (323)
                      .. +..+..     +  . +.+.+..+++...       ...+.-++..+|.+.+..+..++...+ +   +....+.+.
T Consensus       242 ~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~  314 (386)
T 2qby_A          242 LDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYET  314 (386)
T ss_dssp             HHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHH
Confidence            33 322221     1  1 4555555555432       235666778899888777766653221 1   223322121


Q ss_pred             H-------hhcc-----h--HHHHhhhCCcceEc
Q 036903          152 L-------DDSN-----Y--VLNVLVDKSLLRIS  171 (323)
Q Consensus       152 w-------~~~g-----~--~l~~L~~~~ll~~~  171 (323)
                      +       ....     +  +++.|.+.|+++..
T Consensus       315 ~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~  348 (386)
T 2qby_A          315 YLNICKKLGVEAVTQRRVSDIINELDMVGILTAK  348 (386)
T ss_dssp             HHHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            1       1111     1  88999999999764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=93.71  E-value=0.013  Score=55.89  Aligned_cols=92  Identities=15%  Similarity=0.008  Sum_probs=51.3

Q ss_pred             ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCC---
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPT---  297 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~---  297 (323)
                      ..++.+.+..+..-.-......+.++++|++|++++|.+...    ....++.....++ +|++|++++|. ..++.   
T Consensus       130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~----~~~~l~~~~~~~~-~L~~L~l~~~~-~~~~~~~l  203 (594)
T 2p1m_B          130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV----SGHWLSHFPDTYT-SLVSLNISCLA-SEVSFSAL  203 (594)
T ss_dssp             TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECC----CGGGGGGSCTTCC-CCCEEECTTCC-SCCCHHHH
T ss_pred             CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCc----chHHHHHHhhcCC-cCcEEEecccC-CcCCHHHH
Confidence            356666554331101111223445788888888888764100    0112344444666 88888888875 33332   


Q ss_pred             --CCC-CCCceEEEcCCC-cccccc
Q 036903          298 --NLI-TDKLVVLNLPCS-NVELLW  318 (323)
Q Consensus       298 --~i~-L~~L~~L~l~~~-~i~~lP  318 (323)
                        -+. +++|++|++.+| .+..+|
T Consensus       204 ~~l~~~~~~L~~L~L~~~~~~~~l~  228 (594)
T 2p1m_B          204 ERLVTRCPNLKSLKLNRAVPLEKLA  228 (594)
T ss_dssp             HHHHHHCTTCCEEECCTTSCHHHHH
T ss_pred             HHHHHhCCCCcEEecCCCCcHHHHH
Confidence              123 688999999888 454444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=93.61  E-value=0.039  Score=52.66  Aligned_cols=42  Identities=14%  Similarity=0.087  Sum_probs=30.0

Q ss_pred             CCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcc
Q 036903          272 DQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNV  314 (323)
Q Consensus       272 p~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i  314 (323)
                      +..+..++ +|+.|+++++....+|..+. +++|++|++++|.+
T Consensus       263 ~~~l~~~~-~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l  305 (592)
T 3ogk_B          263 YMNLVFPR-KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL  305 (592)
T ss_dssp             SSCCCCCT-TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred             HHHhhccc-cccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence            34556666 67777776666667777776 88888888888864

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=93.59  E-value=0.011  Score=47.83  Aligned_cols=91  Identities=13%  Similarity=0.106  Sum_probs=60.8

Q ss_pred             cceeEEEEeecC-Ccc--ccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCC--
Q 036903          220 TDVIAGIFLDLS-KIR--DIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRT--  294 (323)
Q Consensus       220 ~~~~~~l~~~~~-~~~--~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~--  294 (323)
                      ...++.+.+... .+.  ........+...+.|++|+|++|.+...    ....+...+...+ +|++|+|++|.|..  
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~----g~~~l~~~L~~n~-~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDP----VAFALAEMLKVNN-TLKSLNVESNFISGSG  109 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHH----HHHHHHHHHHHCS-SCCEEECCSSCCCHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChH----HHHHHHHHHHhCC-CcCEEECcCCcCCHHH
Confidence            345666665544 332  1223345677788999999999987200    0012444555567 89999999998875  


Q ss_pred             ---CCCCCC-CCCceEEEc--CCCccc
Q 036903          295 ---LPTNLI-TDKLVVLNL--PCSNVE  315 (323)
Q Consensus       295 ---LP~~i~-L~~L~~L~l--~~~~i~  315 (323)
                         |...+. .++|++|+|  ++|.|.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCC
Confidence               566666 788999999  778764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=93.41  E-value=0.021  Score=45.79  Aligned_cols=60  Identities=5%  Similarity=0.012  Sum_probs=41.4

Q ss_pred             CCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCC-CCCCCC-CCCC-C----CCceEEEcCCCc-cc
Q 036903          247 TNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGY-PLRTLP-TNLI-T----DKLVVLNLPCSN-VE  315 (323)
Q Consensus       247 ~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~-~i~~LP-~~i~-L----~~L~~L~l~~~~-i~  315 (323)
                      -.|+.||+++|.+.       ...+ ..+..++ +|+.|+|++| .++.-- ..+. +    ++|++|+|++|. |+
T Consensus        61 ~~L~~LDLs~~~It-------d~GL-~~L~~~~-~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           61 YKIQAIDATDSCIM-------SIGF-DHMEGLQ-YVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CCEEEEEEESCCCC-------GGGG-GGGTTCS-CCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             ceEeEEeCcCCCcc-------HHHH-HHhcCCC-CCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            36999999999872       2333 3467888 9999999999 454310 0111 3    369999999984 54

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=93.32  E-value=1  Score=40.09  Aligned_cols=153  Identities=10%  Similarity=0.023  Sum_probs=86.7

Q ss_pred             CCceEEEEcCChhhHhhcCC----C-CcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHh---------c
Q 036903           13 PGSRIIVTTRDKRVLDNFGV----P-NTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYC---------K   78 (323)
Q Consensus        13 ~gs~IlvTTR~~~v~~~~~~----~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c---------~   78 (323)
                      .+..||+||+..........    . ....+.++|++.++..+++...+........--.+....+++.+         +
T Consensus       158 ~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  237 (389)
T 1fnn_A          158 FRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNR  237 (389)
T ss_dssp             CCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTS
T ss_pred             CCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCC
Confidence            46778888887654332210    0 12369999999999999999876421101111235677899999         7


Q ss_pred             CCchhHHHHhhh-hc-----CC---ChHHHHHHHHHhhcCCcccHHHHHHHHhcCCChhhHhHhhhhcccC---C--CCC
Q 036903           79 GNPLALRVLGSF-LH-----RK---SKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIACFF---A--GED  144 (323)
Q Consensus        79 GlPLAi~~ig~~-L~-----~~---~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp---~--~~~  144 (323)
                      |.|..+..+... ..     +.   +.+....+.+.....       .+.-.+..|+.+.+.++..++.+.   .  .+.
T Consensus       238 G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~-------~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~  310 (389)
T 1fnn_A          238 GDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFG-------ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYIT  310 (389)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCC-------CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred             CcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhh-------hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCcc
Confidence            877544433322 21     11   233333333332211       123345678888887777666543   1  234


Q ss_pred             HHHHHHHHhh-------cc-----h--HHHHhhhCCcceEcC
Q 036903          145 KNLVTKILDD-------SN-----Y--VLNVLVDKSLLRISR  172 (323)
Q Consensus       145 ~~~l~~~w~~-------~g-----~--~l~~L~~~~ll~~~~  172 (323)
                      ...+...+..       ..     +  ++++|.+.|++....
T Consensus       311 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~  352 (389)
T 1fnn_A          311 FGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQ  352 (389)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEee
Confidence            4444443322       11     1  899999999998753

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=92.84  E-value=1.4  Score=39.08  Aligned_cols=150  Identities=9%  Similarity=0.018  Sum_probs=86.0

Q ss_pred             CCCceEEEEcCChhhHh----hcCCC-CcceEEcCCCCHHhHHHHHHHhhhc---CCCCCCChHHHHHHHHHHhc---CC
Q 036903           12 GPGSRIIVTTRDKRVLD----NFGVP-NTNIYKVRGLNYSEALELFCNFAFK---QSNCPDGLFTLSKHIVGYCK---GN   80 (323)
Q Consensus        12 ~~gs~IlvTTR~~~v~~----~~~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~---~~~~~~~~~~~~~~i~~~c~---Gl   80 (323)
                      ..+..+|.||+......    ..... ....+.+++++.++..+++...+..   ....++   +....+++.++   |.
T Consensus       165 ~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~  241 (387)
T 2v1u_A          165 RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGD  241 (387)
T ss_dssp             ---CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCC
T ss_pred             CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccC
Confidence            34567888887653211    11001 1247899999999999999988632   222233   34667888888   99


Q ss_pred             ch-hHHHHhhhhc-----C--C-ChHHHHHHHHHhhcCCcccHHHHHHHHhcCCChhhHhHhhhhc-ccCC-C-CCHHHH
Q 036903           81 PL-ALRVLGSFLH-----R--K-SKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDIA-CFFA-G-EDKNLV  148 (323)
Q Consensus        81 PL-Ai~~ig~~L~-----~--~-~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s-~fp~-~-~~~~~l  148 (323)
                      |- |+..+..+..     +  . +.+.+..+++...       ...+.-++..|+.+.+..+.... ++.. + +....+
T Consensus       242 ~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~  314 (387)
T 2v1u_A          242 ARRALDLLRVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEI  314 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHH
Confidence            94 3333322221     1  1 5566666665542       23466678899998887776665 3321 1 333433


Q ss_pred             HHHHhh----cch----------HHHHhhhCCcceEc
Q 036903          149 TKILDD----SNY----------VLNVLVDKSLLRIS  171 (323)
Q Consensus       149 ~~~w~~----~g~----------~l~~L~~~~ll~~~  171 (323)
                      .+....    .|.          +++.|...|+++..
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~  351 (387)
T 2v1u_A          315 YERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSR  351 (387)
T ss_dssp             HHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence            332211    111          88889999998864

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=92.68  E-value=0.01  Score=56.68  Aligned_cols=84  Identities=18%  Similarity=0.092  Sum_probs=54.7

Q ss_pred             ceeEEEEeecCCccccccCchhh-hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCC-----
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAF-ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRT-----  294 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~-~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~-----  294 (323)
                      ..++.+.+.......  .....+ ..+++|+.|+|.+|...      ....++..+..++ +|++|++++|.+..     
T Consensus       105 ~~L~~L~L~~~~~~~--~~~~~l~~~~~~L~~L~L~~~~~~------~~~~l~~~~~~~~-~L~~L~L~~~~i~~~~~~~  175 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTD--DCLELIAKSFKNFKVLVLSSCEGF------STDGLAAIAATCR-NLKELDLRESDVDDVSGHW  175 (594)
T ss_dssp             TTCCEEEEESCBCCH--HHHHHHHHHCTTCCEEEEESCEEE------EHHHHHHHHHHCT-TCCEEECTTCEEECCCGGG
T ss_pred             CCCCeEEeeCcEEcH--HHHHHHHHhCCCCcEEeCCCcCCC------CHHHHHHHHHhCC-CCCEEeCcCCccCCcchHH
Confidence            356666555443211  111223 36899999999998320      1122555556788 99999999987554     


Q ss_pred             CCCCCC-CCCceEEEcCCCc
Q 036903          295 LPTNLI-TDKLVVLNLPCSN  313 (323)
Q Consensus       295 LP~~i~-L~~L~~L~l~~~~  313 (323)
                      ++.... +++|++|++++|.
T Consensus       176 l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          176 LSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             GGGSCTTCCCCCEEECTTCC
T ss_pred             HHHHhhcCCcCcEEEecccC
Confidence            444444 8899999999986

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=89.76  E-value=0.15  Score=45.84  Aligned_cols=55  Identities=24%  Similarity=0.199  Sum_probs=40.5

Q ss_pred             hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC----C---CCCCceEEEcC
Q 036903          241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN----L---ITDKLVVLNLP  310 (323)
Q Consensus       241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~----i---~L~~L~~L~l~  310 (323)
                      ..+..+++|+.|.|.++..         ..+|. +. ++ +|+.|+|..|.+   +..    +   .+++|++|+|.
T Consensus       166 ~ll~~~P~L~~L~L~g~~~---------l~l~~-~~-~~-~L~~L~L~~~~l---~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNN---------LSIGK-KP-RP-NLKSLEIISGGL---PDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBT---------CBCCS-CB-CT-TCSEEEEECSBC---CHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HHHhcCCCCcEEEEeCCCC---------ceecc-cc-CC-CCcEEEEecCCC---ChHHHHHHHHccCCCCcEEEEe
Confidence            5678899999999998742         24554 43 77 999999987754   332    1   38899999985

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=88.26  E-value=1.9  Score=37.23  Aligned_cols=75  Identities=9%  Similarity=0.108  Sum_probs=48.7

Q ss_pred             CCCCceEEEEcCChh-hHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchh-HHHHh
Q 036903           11 FGPGSRIIVTTRDKR-VLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLA-LRVLG   88 (323)
Q Consensus        11 ~~~gs~IlvTTR~~~-v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLA-i~~ig   88 (323)
                      ...++++|+||+... +...+. +....+.+.+++.++..+++...+......-  -++....|++.|+|.|.. +..+.
T Consensus       134 ~~~~~~~il~~~~~~~l~~~l~-sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~a~~~l~  210 (323)
T 1sxj_B          134 YSNSTRFAFACNQSNKIIEPLQ-SQCAILRYSKLSDEDVLKRLLQIIKLEDVKY--TNDGLEAIIFTAEGDMRQAINNLQ  210 (323)
T ss_dssp             TTTTEEEEEEESCGGGSCHHHH-TTSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCCceEEEEeCChhhchhHHH-hhceEEeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence            446778888886643 222221 1234899999999999999998764322111  135577899999999954 44443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=88.06  E-value=0.39  Score=36.17  Aligned_cols=35  Identities=31%  Similarity=0.327  Sum_probs=27.0

Q ss_pred             CceEEEEeCCCCCCCCCCCcccccCCC-ccCcCCCceeEEecCCCC
Q 036903          248 NLRLLKFYLPNRRGDPIMSSKVHLDQG-LDYLPEELTYLHWHGYPL  292 (323)
Q Consensus       248 ~LrvL~L~~~~~~~~~~~~~~~~lp~~-i~~L~~~Lr~L~l~~~~i  292 (323)
                      +|+.|+|++|.+         ..+|.. +..++ +|++|+|++|.+
T Consensus        32 ~l~~L~Ls~N~l---------~~l~~~~f~~l~-~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNL---------TALPPGLLDALP-ALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCC---------SSCCTTTGGGCT-TCCEEECCSSCC
T ss_pred             CCCEEECCCCcC---------CccChhhhhhcc-ccCEEEecCCCe
Confidence            588899998887         566654 56777 899999988744

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=87.91  E-value=0.47  Score=38.31  Aligned_cols=76  Identities=5%  Similarity=0.003  Sum_probs=50.4

Q ss_pred             CCCCceEEEEcCChhh-HhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHhh
Q 036903           11 FGPGSRIIVTTRDKRV-LDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGS   89 (323)
Q Consensus        11 ~~~gs~IlvTTR~~~v-~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig~   89 (323)
                      ...++++|+||+.... ..... .....+.+++++.++..+++...+.......  -++....+++.++|.|..+..+..
T Consensus       129 ~~~~~~~i~~~~~~~~~~~~l~-~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~l~~~l~  205 (226)
T 2chg_A          129 YSKSCRFILSCNYVSRIIEPIQ-SRCAVFRFKPVPKEAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFRKAINALQ  205 (226)
T ss_dssp             TTTTEEEEEEESCGGGSCHHHH-TTSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCCCeEEEEeCChhhcCHHHH-HhCceeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence            4567888998876532 11111 0223889999999999999998774322111  135577889999999986655443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=87.27  E-value=0.71  Score=41.91  Aligned_cols=64  Identities=14%  Similarity=0.141  Sum_probs=43.2

Q ss_pred             ccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCC
Q 036903          237 HLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPC  311 (323)
Q Consensus       237 ~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~  311 (323)
                      .+...+|.++.+|+.+++.++.+         ..+|...-... .|+.+.+..+ ++.++... . +.+|+.+++.+
T Consensus       170 ~I~~~aF~~c~~L~~l~l~~n~l---------~~I~~~aF~~~-~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          170 QLKEDIFYYCYNLKKADLSKTKI---------TKLPASTFVYA-GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             EECSSTTTTCTTCCEEECTTSCC---------SEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             EehHHHhhCcccCCeeecCCCcc---------eEechhhEeec-ccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            35567788888899998887765         45555443345 7777777633 66666653 4 77777777765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=86.27  E-value=1.2  Score=40.34  Aligned_cols=43  Identities=12%  Similarity=0.096  Sum_probs=29.0

Q ss_pred             ccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCcccccccc
Q 036903          275 LDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       275 i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~~lP~~  320 (323)
                      +..+. +|+.+.|..+ ++.++.. +. + +|+.+++.++.+..++.+
T Consensus       319 F~~c~-~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~  363 (401)
T 4fdw_A          319 LGGNR-KVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK  363 (401)
T ss_dssp             TTTCC-SCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCS
T ss_pred             hcCCC-CccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccc
Confidence            44455 7778887543 7777654 44 7 888888888877766653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	323
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	1e-24

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 98.7 bits (245), Expect = 1e-24
 Identities = 18/123 (14%), Positives = 33/123 (26%), Gaps = 2/123 (1%)

Query: 11  FGPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLS 70
                R +VTTRD  + +          +V  L   E  +    +        +    + 
Sbjct: 154 QELRLRCLVTTRDVEISNAASQTC-EFIEVTSLEIDECYDFLEAYGMPM-PVGEKEEDVL 211

Query: 71  KHIVGYCKGNPLALRVLGSFLHRKSKLDWENALENLKRSSDFEIYDVLKISYNELNPEEK 130
              +    GNP  L +       K+          L+      +  +   SY  L    +
Sbjct: 212 NKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQ 271

Query: 131 SLF 133
              
Sbjct: 272 RCV 274

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	323
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.87
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.68
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.47
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.45
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.28
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.25
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.24
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.23
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.15
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.13
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.05
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.03
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.98
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.94
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.9
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.88
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.87
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.73
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.69
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.56
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	97.49
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.34
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.21
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.2
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	96.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.72
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.59
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.08
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	94.81
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	93.61
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	92.46
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	89.34
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	86.46

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.87  E-value=3.3e-23  Score=180.63  Aligned_cols=123  Identities=15%  Similarity=0.138  Sum_probs=108.4

Q ss_pred             CCCceEEEEcCChhhHhhcCCCCcceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHhhhh
Q 036903           12 GPGSRIIVTTRDKRVLDNFGVPNTNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFL   91 (323)
Q Consensus        12 ~~gs~IlvTTR~~~v~~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig~~L   91 (323)
                      ..||+||||||++.++..+. ...+.|+|++|+.+|||+||..++|.... ++..++++++|+++|+|+|||++++|+.|
T Consensus       155 ~~~srilvTTR~~~v~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~-~~~~~~~~~~iv~~c~GlPLAl~~ig~~l  232 (277)
T d2a5yb3         155 ELRLRCLVTTRDVEISNAAS-QTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSC  232 (277)
T ss_dssp             HTTCEEEEEESBGGGGGGCC-SCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             ccCceEEEEeehHHHHHhcC-CCCceEECCCCCHHHHHHHHHHHhCCccC-chhhHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence            46899999999999998775 13478999999999999999999876543 34567889999999999999999999999


Q ss_pred             cCCChHHHHHHHHHhhcCCcccHHHHHHHHhcCCChhhHhHhhhh
Q 036903           92 HRKSKLDWENALENLKRSSDFEIYDVLKISYNELNPEEKSLFLDI  136 (323)
Q Consensus        92 ~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~  136 (323)
                      +.++.++|.+..+++......++..++.+||++||+++|+||-++
T Consensus       233 ~~k~~~~~~~~~~~L~~~~~~~v~~il~~sY~~L~~~lk~c~~~l  277 (277)
T d2a5yb3         233 EPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVL  277 (277)
T ss_dssp             CSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTS
T ss_pred             ccCCHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccHHHHHHHHhC
Confidence            999999999999999877778899999999999999999999764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=1.6e-08  Score=75.65  Aligned_cols=85  Identities=22%  Similarity=0.261  Sum_probs=64.4

Q ss_pred             ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCC--C
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPT--N  298 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~--~  298 (323)
                      ..++.+.+..+.++.  + ++.|..+++|++|++++|.+         ..+| +++.++ +|++|++++|.+..+|.  .
T Consensus        20 ~~L~~L~ls~N~l~~--l-p~~~~~l~~L~~L~l~~N~i---------~~l~-~~~~l~-~L~~L~l~~N~i~~~~~~~~   85 (124)
T d1dcea3          20 LLVTHLDLSHNRLRA--L-PPALAALRCLEVLQASDNAL---------ENVD-GVANLP-RLQELLLCNNRLQQSAAIQP   85 (124)
T ss_dssp             TTCCEEECCSSCCCC--C-CGGGGGCTTCCEEECCSSCC---------CCCG-GGTTCS-SCCEEECCSSCCCSSSTTGG
T ss_pred             CCCCEEECCCCccCc--c-hhhhhhhhcccccccccccc---------cccC-cccccc-ccCeEECCCCccCCCCCchh
Confidence            346666555554433  2 34678899999999999987         5565 488888 99999999999998875  3


Q ss_pred             CC-CCCceEEEcCCCccccccc
Q 036903          299 LI-TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       299 i~-L~~L~~L~l~~~~i~~lP~  319 (323)
                      +. +++|++|++++|.+...|.
T Consensus        86 l~~~~~L~~L~l~~N~i~~~~~  107 (124)
T d1dcea3          86 LVSCPRLVLLNLQGNSLCQEEG  107 (124)
T ss_dssp             GGGCTTCCEEECTTSGGGGSSS
T ss_pred             hcCCCCCCEEECCCCcCCcCcc
Confidence            55 8999999999998876653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.66  E-value=8.9e-09  Score=77.10  Aligned_cols=67  Identities=16%  Similarity=0.071  Sum_probs=61.1

Q ss_pred             hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccccc
Q 036903          242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~  319 (323)
                      .+.++++|+.|++++|.+         ..+|+.++.++ +|++|++++|.++.+|. ++ +++|++|++++|.|+.+|.
T Consensus        15 ~l~~l~~L~~L~ls~N~l---------~~lp~~~~~l~-~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~i~~~~~   82 (124)
T d1dcea3          15 HLEQLLLVTHLDLSHNRL---------RALPPALAALR-CLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQSAA   82 (124)
T ss_dssp             CGGGGTTCCEEECCSSCC---------CCCCGGGGGCT-TCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCCSSST
T ss_pred             ccccCCCCCEEECCCCcc---------Ccchhhhhhhh-cccccccccccccccCc-cccccccCeEECCCCccCCCCC
Confidence            478999999999999988         67888899999 99999999999999986 65 9999999999999998874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.61  E-value=4e-08  Score=79.13  Aligned_cols=74  Identities=11%  Similarity=0.121  Sum_probs=52.2

Q ss_pred             cCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCccc
Q 036903          238 LGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       238 ~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~  315 (323)
                      +....|.++++|+.|+|+++.+.        ...+..+..++ +|++|+|++|++..+|.. +. |++|++|+|++|+|+
T Consensus        45 ~~~~~f~~l~~L~~L~L~~N~i~--------~~~~~~~~~~~-~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~  115 (192)
T d1w8aa_          45 SSDGLFGRLPHLVKLELKRNQLT--------GIEPNAFEGAS-HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             CCSCSGGGCTTCCEEECCSSCCC--------CBCTTTTTTCT-TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred             ccccccCCCceEeeeeccccccc--------ccccccccccc-ccceeeeccccccccCHHHHhCCCcccccccCCcccc
Confidence            44566777778888888777762        23445666677 777777777777777665 45 777777777777777


Q ss_pred             ccccc
Q 036903          316 LLWEE  320 (323)
Q Consensus       316 ~lP~~  320 (323)
                      .+|.+
T Consensus       116 ~i~~~  120 (192)
T d1w8aa_         116 CVMPG  120 (192)
T ss_dssp             EECTT
T ss_pred             ccCHH
Confidence            77764

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=4.1e-08  Score=76.94  Aligned_cols=66  Identities=24%  Similarity=0.220  Sum_probs=34.8

Q ss_pred             hhCCCCceEEEEeCCCCCCCCCCCcccccCCCc-cCcCCCceeEEecCCCCCCCCC--CCC-CCCceEEEcCCCcccccc
Q 036903          243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGL-DYLPEELTYLHWHGYPLRTLPT--NLI-TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i-~~L~~~Lr~L~l~~~~i~~LP~--~i~-L~~L~~L~l~~~~i~~lP  318 (323)
                      |..+++|+.|++++|.+         ..+|..+ ..++ +|++|++++|.+..+|.  .+. +++|++|++.+|.+..+|
T Consensus        59 ~~~l~~L~~L~ls~N~i---------~~l~~~~~~~l~-~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          59 FPLLRRLKTLLVNNNRI---------CRIGEGLDQALP-DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             CCCCSSCCEEECCSSCC---------CEECSCHHHHCT-TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             cccCcchhhhhcccccc---------cCCCcccccccc-ccccceeccccccccccccccccccccchhhcCCCcccccc
Confidence            44555555555555554         3444432 3455 55556665555555553  233 555666666555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=6.4e-08  Score=75.78  Aligned_cols=86  Identities=19%  Similarity=0.094  Sum_probs=70.3

Q ss_pred             cceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC
Q 036903          220 TDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL  299 (323)
Q Consensus       220 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i  299 (323)
                      ..+++.+.+..+.+..+   +..+..+++|++|+|++|.+         ..++ .+..++ +|++|++++|.+..+|..+
T Consensus        17 ~~~lr~L~L~~n~I~~i---~~~~~~l~~L~~L~Ls~N~i---------~~l~-~~~~l~-~L~~L~ls~N~i~~l~~~~   82 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNEI---------RKLD-GFPLLR-RLKTLLVNNNRICRIGEGL   82 (162)
T ss_dssp             TTSCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSSCC---------CEEC-CCCCCS-SCCEEECCSSCCCEECSCH
T ss_pred             cCcCcEEECCCCCCCcc---CccccccccCCEEECCCCCC---------CccC-CcccCc-chhhhhcccccccCCCccc
Confidence            33567776666655443   34567899999999999988         5664 588999 9999999999999999886


Q ss_pred             -C-CCCceEEEcCCCccccccc
Q 036903          300 -I-TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       300 -~-L~~L~~L~l~~~~i~~lP~  319 (323)
                       . +++|++|++++|.|+.+|+
T Consensus        83 ~~~l~~L~~L~L~~N~i~~~~~  104 (162)
T d1a9na_          83 DQALPDLTELILTNNSLVELGD  104 (162)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGG
T ss_pred             cccccccccceecccccccccc
Confidence             5 9999999999999988764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.45  E-value=2.5e-07  Score=79.64  Aligned_cols=65  Identities=17%  Similarity=0.169  Sum_probs=31.8

Q ss_pred             chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-------CC-CCCceEEEcCC
Q 036903          240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN-------LI-TDKLVVLNLPC  311 (323)
Q Consensus       240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~-------i~-L~~L~~L~l~~  311 (323)
                      ..+|.++++|++|+|++|.+         ..+|.++..++ +|++|+|++|+|+.+|..       .. +.+|+.|++.+
T Consensus       212 ~~~~~~l~~L~~L~L~~N~L---------~~lp~~l~~l~-~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~  281 (305)
T d1xkua_         212 NGSLANTPHLRELHLNNNKL---------VKVPGGLADHK-YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS  281 (305)
T ss_dssp             TTTGGGSTTCCEEECCSSCC---------SSCCTTTTTCS-SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred             cccccccccceeeecccccc---------ccccccccccc-CCCEEECCCCccCccChhhccCcchhcccCCCCEEECCC
Confidence            34445555555555555544         34455555555 555555555555555431       11 34455555555


Q ss_pred             Ccc
Q 036903          312 SNV  314 (323)
Q Consensus       312 ~~i  314 (323)
                      |.+
T Consensus       282 N~~  284 (305)
T d1xkua_         282 NPV  284 (305)
T ss_dssp             SSS
T ss_pred             CcC
Confidence            543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1.3e-06  Score=67.71  Aligned_cols=84  Identities=17%  Similarity=0.224  Sum_probs=64.4

Q ss_pred             cceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCCCCC
Q 036903          220 TDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTLPTN  298 (323)
Q Consensus       220 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~LP~~  298 (323)
                      ...++.+.+.... ..-.+....|.++++|+.|++++|.+         ..+ |..+..++ +|++|+|++|+++.+|..
T Consensus        30 l~~l~~L~l~~n~-~l~~i~~~~f~~l~~L~~L~Ls~N~l---------~~i~~~~f~~l~-~L~~L~Ls~N~l~~l~~~   98 (156)
T d2ifga3          30 AENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGL---------RFVAPDAFHFTP-RLSRLNLSFNALESLSWK   98 (156)
T ss_dssp             CSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCC---------CEECTTGGGSCS-CCCEEECCSSCCSCCCST
T ss_pred             ccccCeeecCCCc-cccccCchhhccccccCcceeecccc---------CCcccccccccc-cccceeccCCCCcccChh
Confidence            3455555443221 12346677899999999999999987         555 55688899 999999999999999998


Q ss_pred             C-CCCCceEEEcCCCcc
Q 036903          299 L-ITDKLVVLNLPCSNV  314 (323)
Q Consensus       299 i-~L~~L~~L~l~~~~i  314 (323)
                      + ...+|+.|+|.+|.+
T Consensus        99 ~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          99 TVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             TTCSCCCCEEECCSSCC
T ss_pred             hhccccccccccCCCcc
Confidence            6 456899999998854

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=4.4e-07  Score=70.35  Aligned_cols=72  Identities=26%  Similarity=0.208  Sum_probs=60.5

Q ss_pred             chhhhCCCCceEEEEeCCC-CCCCCCCCcccccC-CCccCcCCCceeEEecCCCCCCCCCC-CC-CCCceEEEcCCCccc
Q 036903          240 SRAFENMTNLRLLKFYLPN-RRGDPIMSSKVHLD-QGLDYLPEELTYLHWHGYPLRTLPTN-LI-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       240 ~~~~~~~~~LrvL~L~~~~-~~~~~~~~~~~~lp-~~i~~L~~~Lr~L~l~~~~i~~LP~~-i~-L~~L~~L~l~~~~i~  315 (323)
                      +..+..+++|+.|++.++. +         ..++ ..+..++ +|+.|++++|+|..+|.. +. +++|++|+|++|+|+
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l---------~~i~~~~f~~l~-~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~   93 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHL---------QHLELRDLRGLG-ELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE   93 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSC---------CEECGGGSCSCC-CCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred             cccccCccccCeeecCCCccc---------cccCchhhcccc-ccCcceeeccccCCcccccccccccccceeccCCCCc
Confidence            3456788999999998764 5         4554 4588899 999999999999999766 55 999999999999999


Q ss_pred             cccccc
Q 036903          316 LLWEEK  321 (323)
Q Consensus       316 ~lP~~i  321 (323)
                      .+|.++
T Consensus        94 ~l~~~~   99 (156)
T d2ifga3          94 SLSWKT   99 (156)
T ss_dssp             CCCSTT
T ss_pred             ccChhh
Confidence            999864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.2e-06  Score=73.78  Aligned_cols=69  Identities=22%  Similarity=0.160  Sum_probs=33.8

Q ss_pred             CchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccc
Q 036903          239 GSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELL  317 (323)
Q Consensus       239 ~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~l  317 (323)
                      ....|.++++|+.|+|++|.+         ..+|. ++.++ +|++|+|++|++...|..+. +.+|+.|+++++.+.++
T Consensus        47 ~~~~f~~l~~L~~L~L~~N~l---------~~l~~-~~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~  115 (266)
T d1p9ag_          47 SLATLMPYTRLTQLNLDRAEL---------TKLQV-DGTLP-VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL  115 (266)
T ss_dssp             EGGGGTTCTTCCEEECTTSCC---------CEEEC-CSCCT-TCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCC
T ss_pred             CHHHhhccccccccccccccc---------ccccc-ccccc-ccccccccccccccccccccccccccccccccccccee
Confidence            344555555555565555554         23332 23444 55555555555554444443 55555555554444443


Q ss_pred             c
Q 036903          318 W  318 (323)
Q Consensus       318 P  318 (323)
                      |
T Consensus       116 ~  116 (266)
T d1p9ag_         116 P  116 (266)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.23  E-value=1.3e-06  Score=69.91  Aligned_cols=85  Identities=14%  Similarity=0.120  Sum_probs=67.4

Q ss_pred             ceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccC-CCccCcCCCceeEEecCCCCCCCCCC-
Q 036903          221 DVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLD-QGLDYLPEELTYLHWHGYPLRTLPTN-  298 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp-~~i~~L~~~Lr~L~l~~~~i~~LP~~-  298 (323)
                      ..++.+.+....  ...+....|..+++|+.|+|++|.+         ..+| ..+..|+ +|++|+|++|.|..+|.. 
T Consensus        54 ~~L~~L~L~~N~--i~~~~~~~~~~~~~L~~L~Ls~N~l---------~~l~~~~F~~l~-~L~~L~L~~N~l~~i~~~~  121 (192)
T d1w8aa_          54 PHLVKLELKRNQ--LTGIEPNAFEGASHIQELQLGENKI---------KEISNKMFLGLH-QLKTLNLYDNQISCVMPGS  121 (192)
T ss_dssp             TTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSCCC---------CEECSSSSTTCT-TCCEEECCSSCCCEECTTS
T ss_pred             ceEeeeeccccc--cccccccccccccccceeeeccccc---------cccCHHHHhCCC-cccccccCCccccccCHHH
Confidence            345555444333  3456678899999999999999988         5554 4588999 999999999999999886 


Q ss_pred             CC-CCCceEEEcCCCccccc
Q 036903          299 LI-TDKLVVLNLPCSNVELL  317 (323)
Q Consensus       299 i~-L~~L~~L~l~~~~i~~l  317 (323)
                      +. +.+|++|+|.+|.+...
T Consensus       122 f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_         122 FEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             STTCTTCCEEECTTCCBCCS
T ss_pred             hcCCcccccccccccccccc
Confidence            56 99999999999876543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.15  E-value=2.9e-06  Score=72.66  Aligned_cols=76  Identities=18%  Similarity=0.254  Sum_probs=65.8

Q ss_pred             cccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcc
Q 036903          236 IHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNV  314 (323)
Q Consensus       236 l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i  314 (323)
                      .......|.+++.+++|+++++.+.        ...|..+..++ +|++|+|++|.++.+|.++. +++|++|+|++|+|
T Consensus       184 ~~~~~~~~~~~~~l~~L~~s~n~l~--------~~~~~~~~~l~-~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i  254 (305)
T d1xkua_         184 TKVDAASLKGLNNLAKLGLSFNSIS--------AVDNGSLANTP-HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI  254 (305)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCC--------EECTTTGGGST-TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCC
T ss_pred             CCCChhHhhcccccccccccccccc--------ccccccccccc-cceeeecccccccccccccccccCCCEEECCCCcc
Confidence            4455678899999999999999872        23356788899 99999999999999999997 99999999999999


Q ss_pred             cccccc
Q 036903          315 ELLWEE  320 (323)
Q Consensus       315 ~~lP~~  320 (323)
                      +.+|.+
T Consensus       255 ~~i~~~  260 (305)
T d1xkua_         255 SAIGSN  260 (305)
T ss_dssp             CCCCTT
T ss_pred             CccChh
Confidence            998764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3.6e-06  Score=70.78  Aligned_cols=64  Identities=20%  Similarity=0.147  Sum_probs=35.1

Q ss_pred             CchhhhCCCCceEEEEeCCCCCCCCCCCcccccC-CCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCC
Q 036903          239 GSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLD-QGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCS  312 (323)
Q Consensus       239 ~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp-~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~  312 (323)
                      .+..+..+++|+.|++++|.+         ..+| ..+..++ +|++|+|++|+++.||.++. +.+|+.|+|.+|
T Consensus       140 ~~~~~~~l~~l~~l~l~~N~l---------~~~~~~~~~~l~-~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         140 PPGLLTPTPKLEKLSLANNNL---------TELPAGLLNGLE-NLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             CTTTTTTCTTCCEEECTTSCC---------SCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred             ccccccccccchhcccccccc---------cccCcccccccc-ccceeecccCCCcccChhHCCCCCCCEEEecCC
Confidence            344455555556666655554         2332 3345555 66666666666666665554 666666666554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.05  E-value=1.5e-06  Score=74.90  Aligned_cols=62  Identities=21%  Similarity=0.060  Sum_probs=30.0

Q ss_pred             hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC-CCCCCCCCCCceEEEcCCCc
Q 036903          243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR-TLPTNLITDKLVVLNLPCSN  313 (323)
Q Consensus       243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~-~LP~~i~L~~L~~L~l~~~~  313 (323)
                      +..+++|++|+|++|.+        ...+|..+++|+ +|++|+|++|++. .+|....|++|+.|++.+|+
T Consensus       240 ~~~~~~L~~L~Ls~N~l--------~g~iP~~l~~L~-~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         240 VGLSKNLNGLDLRNNRI--------YGTLPQGLTQLK-FLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCCCTTCCEEECCSSCC--------EECCCGGGGGCT-TCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             cccccccccccCccCee--------cccCChHHhCCC-CCCEEECcCCcccccCCCcccCCCCCHHHhCCCc
Confidence            34445555555555544        124455555555 5555555555444 44432225555555555553

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.03  E-value=2.3e-06  Score=73.74  Aligned_cols=83  Identities=16%  Similarity=0.107  Sum_probs=55.4

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeC-CCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCC-C
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYL-PNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTN-L  299 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~-~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~-i  299 (323)
                      ++..+.+...........+..+.++++|++|+|++ +.+        ...+|.++++|+ +|++|+|++|++..++.. +
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l--------~g~iP~~i~~L~-~L~~L~Ls~N~l~~~~~~~~  121 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL--------VGPIPPAIAKLT-QLHYLYITHTNVSGAIPDFL  121 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE--------ESCCCGGGGGCT-TCSEEEEEEECCEEECCGGG
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccc--------cccccccccccc-ccchhhhccccccccccccc
Confidence            45566555444433323456778888899999886 443        236888888888 888888888877665544 3


Q ss_pred             C-CCCceEEEcCCCc
Q 036903          300 I-TDKLVVLNLPCSN  313 (323)
Q Consensus       300 ~-L~~L~~L~l~~~~  313 (323)
                      . +.+|++|++.+|.
T Consensus       122 ~~~~~L~~l~l~~N~  136 (313)
T d1ogqa_         122 SQIKTLVTLDFSYNA  136 (313)
T ss_dssp             GGCTTCCEEECCSSE
T ss_pred             cchhhhccccccccc
Confidence            4 6666666666664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.98  E-value=2.2e-06  Score=75.47  Aligned_cols=83  Identities=16%  Similarity=0.151  Sum_probs=65.3

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCC
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLIT  301 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L  301 (323)
                      .++.+.+....+..+    +.+..+++|++|++++|.+         ..+|. ++.++ +|++|++++|.+..+|.--++
T Consensus        45 ~l~~L~l~~~~I~~l----~gl~~L~nL~~L~Ls~N~l---------~~l~~-l~~L~-~L~~L~L~~n~i~~i~~l~~l  109 (384)
T d2omza2          45 QVTTLQADRLGIKSI----DGVEYLNNLTQINFSNNQL---------TDITP-LKNLT-KLVDILMNNNQIADITPLANL  109 (384)
T ss_dssp             TCCEEECCSSCCCCC----TTGGGCTTCCEEECCSSCC---------CCCGG-GTTCT-TCCEEECCSSCCCCCGGGTTC
T ss_pred             CCCEEECCCCCCCCc----cccccCCCCCEEeCcCCcC---------CCCcc-ccCCc-ccccccccccccccccccccc
Confidence            466666665555432    3578899999999999987         56663 88999 999999999999998863349


Q ss_pred             CCceEEEcCCCccccccc
Q 036903          302 DKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       302 ~~L~~L~l~~~~i~~lP~  319 (323)
                      ++|+.|++.++.+..++.
T Consensus       110 ~~L~~L~~~~~~~~~~~~  127 (384)
T d2omza2         110 TNLTGLTLFNNQITDIDP  127 (384)
T ss_dssp             TTCCEEECCSSCCCCCGG
T ss_pred             cccccccccccccccccc
Confidence            999999999988876654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.94  E-value=4.6e-06  Score=68.33  Aligned_cols=65  Identities=20%  Similarity=0.234  Sum_probs=41.0

Q ss_pred             hhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCcccccc
Q 036903          242 AFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       242 ~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP  318 (323)
                      .+.++++|+.|++.++.+         ...+ .++.++ +|++|++++|.++.+|. ++ +++|++|++++|+++.+|
T Consensus       146 ~~~~~~~L~~L~l~~n~~---------~~~~-~l~~l~-~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~  211 (227)
T d1h6ua2         146 PLAGLTNLQYLSIGNAQV---------SDLT-PLANLS-KLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS  211 (227)
T ss_dssp             GGGGCTTCCEEECCSSCC---------CCCG-GGTTCT-TCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG
T ss_pred             hhcccccccccccccccc---------ccch-hhcccc-cceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCc
Confidence            355666677777766654         2222 356666 77777777777766654 44 677777777777766665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.94  E-value=6.1e-06  Score=72.51  Aligned_cols=64  Identities=17%  Similarity=0.262  Sum_probs=54.9

Q ss_pred             hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccccc
Q 036903          244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       244 ~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~lP~  319 (323)
                      ..+++|+.|+++++++         ..+ ++++.|+ +|++|++++|+++.+|. ++ |++|++|++++|.+..+|.
T Consensus        41 ~~l~~l~~L~l~~~~I---------~~l-~gl~~L~-nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~  105 (384)
T d2omza2          41 TDLDQVTTLQADRLGI---------KSI-DGVEYLN-NLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP  105 (384)
T ss_dssp             HHHTTCCEEECCSSCC---------CCC-TTGGGCT-TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred             HHhCCCCEEECCCCCC---------CCc-cccccCC-CCCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc
Confidence            4567899999999987         455 5789999 99999999999999986 66 9999999999999887764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.90  E-value=6e-06  Score=66.90  Aligned_cols=65  Identities=17%  Similarity=0.159  Sum_probs=44.0

Q ss_pred             hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCceEEEcCCCcccccc
Q 036903          243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~lP  318 (323)
                      +..+++|+.|++++|.+         ..++ .++.++ +|++|++++|+++.+|.-.++++|+.|++.+|.+..+|
T Consensus        64 l~~l~~L~~L~L~~n~i---------~~l~-~~~~l~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~~  128 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKL---------TDIK-PLANLK-NLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN  128 (210)
T ss_dssp             GGGCTTCCEEECCSSCC---------CCCG-GGTTCT-TCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG
T ss_pred             HhhCCCCCEEeCCCccc---------cCcc-ccccCc-cccccccccccccccccccccccccccccccccccccc
Confidence            56677777777777766         3444 356677 77777777777777774223777777777777665554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.88  E-value=8.6e-06  Score=65.32  Aligned_cols=67  Identities=19%  Similarity=0.219  Sum_probs=55.3

Q ss_pred             hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCceEEEcCCCcccccc
Q 036903          241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~lP  318 (323)
                      +.+.++++|+.|++++|.+         ..+| .+..++ +|++|++.+|.++.+|.--++++|++|++++|+++.+|
T Consensus       122 ~~~~~l~~L~~L~l~~n~l---------~~~~-~l~~~~-~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         122 DPLKNLTNLNRLELSSNTI---------SDIS-ALSGLT-SLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             GGGTTCTTCSEEECCSSCC---------CCCG-GGTTCT-TCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred             cccchhhhhHHhhhhhhhh---------cccc-cccccc-cccccccccccccCCccccCCCCCCEEECCCCCCCCCc
Confidence            4577888999999988876         3444 577888 99999999999999886334999999999999998876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.87  E-value=1.1e-05  Score=64.74  Aligned_cols=65  Identities=17%  Similarity=0.132  Sum_probs=33.6

Q ss_pred             hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCceEEEcCCCcccccc
Q 036903          243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~lP  318 (323)
                      +.++++|+.|++++|.+         ..+| .++.++ +|++|+++++.+..++..-++++|+.|++++|.+..+|
T Consensus        80 l~~l~~L~~L~l~~n~~---------~~~~-~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  144 (199)
T d2omxa2          80 LKNLTKLVDILMNNNQI---------ADIT-PLANLT-NLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS  144 (199)
T ss_dssp             GTTCTTCCEEECCSSCC---------CCCG-GGTTCT-TCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG
T ss_pred             ccCCccccccccccccc---------cccc-cccccc-ccccccccccccccccccchhhhhHHhhhhhhhhcccc
Confidence            44555555555555443         2232 245555 56666665555554443223666666666666655544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.86  E-value=1.7e-07  Score=75.82  Aligned_cols=64  Identities=17%  Similarity=0.106  Sum_probs=29.2

Q ss_pred             hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCCCccccc
Q 036903          243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPCSNVELL  317 (323)
Q Consensus       243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~~~i~~l  317 (323)
                      |.++++|+.|+|++|.+         ..+|.....++ .|++|++++|.++.+|. +. +++|++|++++|+|+.+
T Consensus        66 l~~l~~L~~L~Ls~N~i---------~~i~~~~~~~~-~L~~L~l~~N~i~~l~~-~~~l~~L~~L~L~~N~i~~~  130 (198)
T d1m9la_          66 LSGMENLRILSLGRNLI---------KKIENLDAVAD-TLEELWISYNQIASLSG-IEKLVNLRVLYMSNNKITNW  130 (198)
T ss_dssp             HHHHTTCCEEECCEEEE---------CSCSSHHHHHH-HCCEEECSEEECCCHHH-HHHHHHSSEEEESEEECCCH
T ss_pred             ccCCccccChhhccccc---------ccccccccccc-ccccccccccccccccc-ccccccccccccccchhccc
Confidence            44445555555554443         33333223233 45555555555544432 22 45555555555544443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.85  E-value=1e-05  Score=69.99  Aligned_cols=62  Identities=16%  Similarity=0.069  Sum_probs=52.5

Q ss_pred             hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCceEEEcCCCcccccccc
Q 036903          244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLWEE  320 (323)
Q Consensus       244 ~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~lP~~  320 (323)
                      ..+++|+.|++++|.+         ..+|..   ++ +|++|+|++|.|+.+|..  +.+|++|++++|.++.+|+.
T Consensus       281 ~~~~~L~~L~Ls~N~l---------~~lp~~---~~-~L~~L~L~~N~L~~l~~~--~~~L~~L~L~~N~L~~lp~~  342 (353)
T d1jl5a_         281 DLPPSLEELNVSNNKL---------IELPAL---PP-RLERLIASFNHLAEVPEL--PQNLKQLHVEYNPLREFPDI  342 (353)
T ss_dssp             CCCTTCCEEECCSSCC---------SCCCCC---CT-TCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCC
T ss_pred             ccCCCCCEEECCCCcc---------Cccccc---cC-CCCEEECCCCcCCccccc--cCCCCEEECcCCcCCCCCcc
Confidence            4467999999999987         577865   45 899999999999999964  56899999999999998863

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.7e-05  Score=67.05  Aligned_cols=69  Identities=20%  Similarity=0.231  Sum_probs=30.9

Q ss_pred             chhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecCCCCCCC-CCCCC-CCCceEEEcCCCcccc
Q 036903          240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHGYPLRTL-PTNLI-TDKLVVLNLPCSNVEL  316 (323)
Q Consensus       240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~~~i~~L-P~~i~-L~~L~~L~l~~~~i~~  316 (323)
                      ...|..+.+|+.|+++++.+         ..+ |..+..++ +|++|++++|++..+ |..++ +.+|++|++++|.+..
T Consensus       146 ~~~f~~~~~L~~L~l~~N~l---------~~l~~~~f~~l~-~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~  215 (284)
T d1ozna_         146 DDTFRDLGNLTHLFLHGNRI---------SSVPERAFRGLH-SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA  215 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCC---------CEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             hhHhccccchhhcccccCcc---------cccchhhhcccc-ccchhhhhhccccccChhHhhhhhhccccccccccccc
Confidence            33444445555555555444         222 22334444 455555544444433 33333 4455555555544444


Q ss_pred             cc
Q 036903          317 LW  318 (323)
Q Consensus       317 lP  318 (323)
                      +|
T Consensus       216 ~~  217 (284)
T d1ozna_         216 LP  217 (284)
T ss_dssp             CC
T ss_pred             cc
Confidence            44

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.74  E-value=9.5e-06  Score=66.36  Aligned_cols=59  Identities=22%  Similarity=0.314  Sum_probs=50.9

Q ss_pred             hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCC-CCCceEEEcCC
Q 036903          241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLI-TDKLVVLNLPC  311 (323)
Q Consensus       241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~-L~~L~~L~l~~  311 (323)
                      ..|.++++|+.|+|++|.+         ..+| .++.++ +|++|++++|+++.+|. ++ +++|+.|++++
T Consensus       167 ~~l~~l~~L~~L~Ls~n~l---------~~l~-~l~~l~-~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         167 TPLANLSKLTTLKADDNKI---------SDIS-PLASLP-NLIEVHLKNNQISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             GGGTTCTTCCEEECCSSCC---------CCCG-GGGGCT-TCCEEECTTSCCCBCGG-GTTCTTCCEEEEEE
T ss_pred             hhhcccccceecccCCCcc---------CCCh-hhcCCC-CCCEEECcCCcCCCCcc-cccCCCCCEEEeeC
Confidence            3478999999999999987         4555 388899 99999999999999986 55 99999999864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.73  E-value=8.7e-06  Score=65.91  Aligned_cols=64  Identities=20%  Similarity=0.233  Sum_probs=54.8

Q ss_pred             CCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCCCCCCceEEEcCCCccccccc
Q 036903          245 NMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNLITDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       245 ~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l~~~~i~~lP~  319 (323)
                      .+..|+.|+++++.+         ..++ +++.++ +|++|++++|.++.+|..-.|++|++|++++|+++.+|.
T Consensus        44 ~L~~L~~L~l~~~~i---------~~l~-~l~~l~-~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~  107 (210)
T d1h6ta2          44 ELNSIDQIIANNSDI---------KSVQ-GIQYLP-NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS  107 (210)
T ss_dssp             HHHTCCEEECTTSCC---------CCCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG
T ss_pred             HhcCccEEECcCCCC---------CCch-hHhhCC-CCCEEeCCCccccCccccccCcccccccccccccccccc
Confidence            456789999999987         4554 589999 999999999999999864349999999999999998874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=4.1e-05  Score=64.63  Aligned_cols=42  Identities=26%  Similarity=0.275  Sum_probs=23.0

Q ss_pred             ccCcCCCceeEEecCCCCCCCCCCC-C-CCCceEEEcCCCccccc
Q 036903          275 LDYLPEELTYLHWHGYPLRTLPTNL-I-TDKLVVLNLPCSNVELL  317 (323)
Q Consensus       275 i~~L~~~Lr~L~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i~~l  317 (323)
                      +..++ +|+.|++++|++..+|... . +++|+.|++.+|++..+
T Consensus       149 f~~~~-~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         149 FRDLG-NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             hcccc-chhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence            44455 5666666665555554432 3 56666666666555444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.56  E-value=1.7e-07  Score=75.87  Aligned_cols=64  Identities=20%  Similarity=0.134  Sum_probs=36.0

Q ss_pred             hCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCC--CCC-CCCceEEEcCCCcccccc
Q 036903          244 ENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPT--NLI-TDKLVVLNLPCSNVELLW  318 (323)
Q Consensus       244 ~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~--~i~-L~~L~~L~l~~~~i~~lP  318 (323)
                      ..+++|+.|++++|.+         ..++ .+..++ +|++|++++|.+..+|.  .++ +++|+.|++++|.+...+
T Consensus        90 ~~~~~L~~L~l~~N~i---------~~l~-~~~~l~-~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~  156 (198)
T d1m9la_          90 AVADTLEELWISYNQI---------ASLS-GIEKLV-NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             HHHHHCCEEECSEEEC---------CCHH-HHHHHH-HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHH
T ss_pred             cccccccccccccccc---------cccc-cccccc-cccccccccchhccccccccccCCCccceeecCCCccccCc
Confidence            3344566666666654         2332 355555 66666666666666653  344 666666666666554433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=97.49  E-value=3.8e-05  Score=66.21  Aligned_cols=67  Identities=19%  Similarity=0.146  Sum_probs=47.8

Q ss_pred             CCCceEEEEeCCCCCCCCCCCcccccCCCcc----------------CcCCCceeEEecCCCCCCCCCCCCCCCceEEEc
Q 036903          246 MTNLRLLKFYLPNRRGDPIMSSKVHLDQGLD----------------YLPEELTYLHWHGYPLRTLPTNLITDKLVVLNL  309 (323)
Q Consensus       246 ~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~----------------~L~~~Lr~L~l~~~~i~~LP~~i~L~~L~~L~l  309 (323)
                      .++|+.|+++++.+         ..+|+.++                .++..|++|++++|.+..+|....+.+|++|++
T Consensus        57 ~~~L~~L~Ls~N~l---------~~lp~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l  127 (353)
T d1jl5a_          57 PPHLESLVASCNSL---------TELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDV  127 (353)
T ss_dssp             CTTCSEEECCSSCC---------SSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEEC
T ss_pred             CCCCCEEECCCCCC---------cccccchhhhhhhhhhhcccchhhhhccccccccccccccccccchhhhccceeecc
Confidence            46899999999987         45555433                333357788888888888876433888888888


Q ss_pred             CCCccccccccc
Q 036903          310 PCSNVELLWEEK  321 (323)
Q Consensus       310 ~~~~i~~lP~~i  321 (323)
                      .++.+...|..+
T Consensus       128 ~~~~~~~~~~~~  139 (353)
T d1jl5a_         128 DNNSLKKLPDLP  139 (353)
T ss_dssp             CSSCCSCCCCCC
T ss_pred             cccccccccccc
Confidence            888877776543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=7.9e-06  Score=63.40  Aligned_cols=70  Identities=19%  Similarity=0.046  Sum_probs=54.2

Q ss_pred             hhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCCCC--CCCCceEEEcCCCccccc
Q 036903          241 RAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPTNL--ITDKLVVLNLPCSNVELL  317 (323)
Q Consensus       241 ~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~~i--~L~~L~~L~l~~~~i~~l  317 (323)
                      ..+.+++.|++|+|++|.+.      ....++..++.++ +|++|+|++|.|+.++.--  +..+|+.|++.+|.+...
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~------~l~~~~~~~~~l~-~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLY------RLDDMSSIVQKAP-NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCC------CCSGGGTHHHHST-TCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HHHHhCCCCCEeeCCCcccc------CCchhHHHHhhCC-cccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            34567899999999999882      1123455677888 9999999999999998732  455799999999977643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00039  Score=56.64  Aligned_cols=70  Identities=14%  Similarity=0.137  Sum_probs=35.8

Q ss_pred             chhhhCCC-CceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeE-EecCCCCCCCCCCC-C-CCCceEEEcCCCccc
Q 036903          240 SRAFENMT-NLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYL-HWHGYPLRTLPTNL-I-TDKLVVLNLPCSNVE  315 (323)
Q Consensus       240 ~~~~~~~~-~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L-~l~~~~i~~LP~~i-~-L~~L~~L~l~~~~i~  315 (323)
                      ...|.++. .+..|++.++.+         ..++....... ++..+ .+.++.++++|... . +.+|++|++++|+++
T Consensus       145 ~~~~~~~~~~l~~L~l~~n~l---------~~i~~~~~~~~-~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         145 RNSFVGLSFESVILWLNKNGI---------QEIHNCAFNGT-QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             TTSSTTSBSSCEEEECCSSCC---------CEECTTTTTTC-CEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             ccccccccccceeeecccccc---------cccccccccch-hhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            34444433 455666665554         34444444444 43333 33444566665542 3 566666666666666


Q ss_pred             cccc
Q 036903          316 LLWE  319 (323)
Q Consensus       316 ~lP~  319 (323)
                      .+|.
T Consensus       215 ~l~~  218 (242)
T d1xwdc1         215 SLPS  218 (242)
T ss_dssp             CCCS
T ss_pred             ccCH
Confidence            5554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00027  Score=57.69  Aligned_cols=87  Identities=14%  Similarity=0.143  Sum_probs=52.6

Q ss_pred             eeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCccccc-CCCccCcCCCceeEEecC-CCCCCCCCC-
Q 036903          222 VIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHL-DQGLDYLPEELTYLHWHG-YPLRTLPTN-  298 (323)
Q Consensus       222 ~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~l-p~~i~~L~~~Lr~L~l~~-~~i~~LP~~-  298 (323)
                      .++.+.+....+  ..+....|.++++|++|+++++.+.        ..+ +..+..++ .+++|.+.+ +++..+|.. 
T Consensus        30 ~l~~L~Ls~n~i--~~l~~~~f~~l~~L~~L~ls~n~~~--------~~i~~~~f~~l~-~l~~l~~~~~n~l~~~~~~~   98 (242)
T d1xwdc1          30 NAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVL--------EVIEADVFSNLP-KLHEIRIEKANNLLYINPEA   98 (242)
T ss_dssp             CCSEEEEESCCC--CEECTTTTTTCTTCCEEEEESCTTC--------CEECSSSEESCT-TCCEEEEECCTTCCEECTTS
T ss_pred             CCCEEECcCCcC--CccChhHhhccchhhhhhhcccccc--------ceeecccccccc-cccccccccccccccccccc
Confidence            345555544443  3455667899999999999988762        122 23455566 666666544 355555544 


Q ss_pred             CC-CCCceEEEcCCCccccccc
Q 036903          299 LI-TDKLVVLNLPCSNVELLWE  319 (323)
Q Consensus       299 i~-L~~L~~L~l~~~~i~~lP~  319 (323)
                      +. +++|++|++.+|.+...|.
T Consensus        99 ~~~l~~L~~l~l~~~~l~~~~~  120 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTGIKHLPD  120 (242)
T ss_dssp             EECCTTCCEEEEESCCCCSCCC
T ss_pred             ccccccccccccchhhhccccc
Confidence            34 6677777776666655543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0013  Score=55.24  Aligned_cols=62  Identities=18%  Similarity=-0.046  Sum_probs=40.3

Q ss_pred             hhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCC-CCCC-CCCCCC-CCCceEEEcCCC
Q 036903          243 FENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGY-PLRT-LPTNLI-TDKLVVLNLPCS  312 (323)
Q Consensus       243 ~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~-~i~~-LP~~i~-L~~L~~L~l~~~  312 (323)
                      +.++++|+.|++++|..       .....+..+.+++ +|++|++++| .+.. -+..++ +++|+.|++.+|
T Consensus       171 ~~~~~~L~~L~L~~~~~-------itd~~~~~l~~~~-~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         171 VRRCPNLVHLDLSDSVM-------LKNDCFQEFFQLN-YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHHCTTCSEEECTTCTT-------CCGGGGGGGGGCT-TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccC-------CCchhhhhhcccC-cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            45677888888877653       1234455677777 8888888876 4432 223344 778888888776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.00076  Score=51.66  Aligned_cols=79  Identities=15%  Similarity=0.061  Sum_probs=56.1

Q ss_pred             cceeEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCC-CccCcCCCceeEEecCCCCCCCCCC
Q 036903          220 TDVIAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQ-GLDYLPEELTYLHWHGYPLRTLPTN  298 (323)
Q Consensus       220 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~-~i~~L~~~Lr~L~l~~~~i~~LP~~  298 (323)
                      ...++.+.+..+++..+......+.++++|+.|+|++|.+         ..+++ ...... +|+.|++++|.+......
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i---------~~l~~l~~l~~~-~L~~L~L~~Npl~~~~~~  133 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL---------KSERELDKIKGL-KLEELWLDGNSLSDTFRD  133 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCC---------CCGGGHHHHTTC-CCSSCCCTTSTTSSSSSS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcc---------ccchhhhhhhcc-ccceeecCCCCcCcCccc
Confidence            3456666666666655554556788999999999999988         44443 122345 789999999988766542


Q ss_pred             --------CC-CCCceEEE
Q 036903          299 --------LI-TDKLVVLN  308 (323)
Q Consensus       299 --------i~-L~~L~~L~  308 (323)
                              +. +++|+.||
T Consensus       134 ~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         134 QSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHHTTSTTCCEET
T ss_pred             chhHHHHHHHHCCCCCEEC
Confidence                    35 88999886

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0016  Score=57.53  Aligned_cols=91  Identities=18%  Similarity=0.031  Sum_probs=55.5

Q ss_pred             eeEEEEeecCCccc--cccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCC-----
Q 036903          222 VIAGIFLDLSKIRD--IHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRT-----  294 (323)
Q Consensus       222 ~~~~l~~~~~~~~~--l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~-----  294 (323)
                      .++++.+..+.+..  .......+..+++|+.|||++|.+...    ....+...+......|++|+|++|.++.     
T Consensus        28 ~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~----~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~  103 (460)
T d1z7xw1          28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDV----GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  103 (460)
T ss_dssp             TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHH----HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             CCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChH----HHHHHHHHHhcCCCCCCEEECCCCCcccccccc
Confidence            44566555554321  122234567888899999988876100    0012333333222268999999888754     


Q ss_pred             CCCCCC-CCCceEEEcCCCcccc
Q 036903          295 LPTNLI-TDKLVVLNLPCSNVEL  316 (323)
Q Consensus       295 LP~~i~-L~~L~~L~l~~~~i~~  316 (323)
                      ++..+. +++|++|++++|.+..
T Consensus       104 l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1         104 LSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCHH
T ss_pred             ccchhhccccccccccccccchh
Confidence            456666 8899999999987653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.0034  Score=55.28  Aligned_cols=88  Identities=13%  Similarity=0.095  Sum_probs=55.7

Q ss_pred             eEEEEeecCCccccccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCC-----CCCC
Q 036903          223 IAGIFLDLSKIRDIHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLR-----TLPT  297 (323)
Q Consensus       223 ~~~l~~~~~~~~~l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~-----~LP~  297 (323)
                      ++.+-+...++... -....+..++++++|+|.+|++...    ....++..+...+ +|++|+|++|.|.     .+..
T Consensus         4 l~~ld~~~~~i~~~-~~~~l~~~l~~l~~L~L~~~~i~~~----~~~~l~~~L~~~~-~L~~LdLs~N~i~~~~~~~l~~   77 (460)
T d1z7xw1           4 IQSLDIQCEELSDA-RWAELLPLLQQCQVVRLDDCGLTEA----RCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEESCCCCHH-HHHHHHHHHTTCSEEEEESSCCCHH----HHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCEEEeeCCcCChH-HHHHHHHhCCCCCEEEeCCCCCCHH----HHHHHHHHHhcCC-CCCEEECcCCcCChHHHHHHHH
Confidence            44444444443221 1233567788999999999987200    0023455567788 8999999998774     2344


Q ss_pred             CCC--CCCceEEEcCCCcccc
Q 036903          298 NLI--TDKLVVLNLPCSNVEL  316 (323)
Q Consensus       298 ~i~--L~~L~~L~l~~~~i~~  316 (323)
                      .+.  ..+|++|++++|.++.
T Consensus        78 ~l~~~~~~L~~L~L~~n~it~   98 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNCCLTG   98 (460)
T ss_dssp             TTCSTTCCCCEEECTTSCCBG
T ss_pred             HHhcCCCCCCEEECCCCCccc
Confidence            443  3579999999998753

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.0012  Score=55.32  Aligned_cols=64  Identities=20%  Similarity=0.138  Sum_probs=49.4

Q ss_pred             chhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCC-CCCC--CCCCCC-CCCceEEEcCCC
Q 036903          240 SRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGY-PLRT--LPTNLI-TDKLVVLNLPCS  312 (323)
Q Consensus       240 ~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~-~i~~--LP~~i~-L~~L~~L~l~~~  312 (323)
                      ...+.++++|+.|++++|.+.        ...+..+..++ +|++|++++| .++.  ++.-.. +++|++|++++|
T Consensus        64 ~~l~~~c~~L~~L~L~~~~l~--------~~~~~~l~~~~-~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c  131 (284)
T d2astb2          64 HGILSQCSKLQNLSLEGLRLS--------DPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  131 (284)
T ss_dssp             HHHHTTBCCCSEEECTTCBCC--------HHHHHHHTTCT-TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             HHHHHhCCCcccccccccCCC--------cHHHHHHhcCC-CCcCccccccccccccccchhhHHHHhccccccccc
Confidence            345788999999999999762        34556788888 9999999997 5542  222234 899999999998

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.61  E-value=0.0076  Score=51.47  Aligned_cols=91  Identities=19%  Similarity=0.153  Sum_probs=58.3

Q ss_pred             ceeEEEEeecCCcccc---ccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCC--
Q 036903          221 DVIAGIFLDLSKIRDI---HLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTL--  295 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~l---~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~L--  295 (323)
                      ..++.+.+..+.+...   .+....+..+++|+.|+|++|.+...    ....+...+...+ +|++|+|++|.+..-  
T Consensus       186 ~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~----g~~~L~~~l~~~~-~L~~L~Ls~n~i~~~g~  260 (344)
T d2ca6a1         186 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL----GSSALAIALKSWP-NLRELGLNDCLLSARGA  260 (344)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH----HHHHHHHHGGGCT-TCCEEECTTCCCCHHHH
T ss_pred             hhhcccccccccccccccccchhhhhcchhhhccccccccccccc----ccccccccccccc-cchhhhhhcCccCchhh
Confidence            3566766655544321   12344577889999999999876100    0022455677778 999999999987542  


Q ss_pred             ---CCCC---CCCCceEEEcCCCcccc
Q 036903          296 ---PTNL---ITDKLVVLNLPCSNVEL  316 (323)
Q Consensus       296 ---P~~i---~L~~L~~L~l~~~~i~~  316 (323)
                         -..+   .-..|++|++++|.|..
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHHHHHhhhccCCCCCEEECCCCcCCh
Confidence               1111   13579999999998753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.46  E-value=0.0098  Score=50.75  Aligned_cols=93  Identities=14%  Similarity=0.010  Sum_probs=58.2

Q ss_pred             cceeEEEEeecCCccc--cccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccC--cCCCceeEEecCCCCCC-
Q 036903          220 TDVIAGIFLDLSKIRD--IHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDY--LPEELTYLHWHGYPLRT-  294 (323)
Q Consensus       220 ~~~~~~l~~~~~~~~~--l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~--L~~~Lr~L~l~~~~i~~-  294 (323)
                      ...++.+.+..+.+..  .......+..+++|+.|+|++|.+....    ...+-+.+..  -+ .|+.|++++|.|.. 
T Consensus       214 ~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g----~~~l~~~l~~~~~~-~L~~L~ls~N~i~~~  288 (344)
T d2ca6a1         214 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG----AAAVVDAFSKLENI-GLQTLRLQYNEIELD  288 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH----HHHHHHHHHTCSSC-CCCEEECCSSCCBHH
T ss_pred             hhhhcccccccccccccccccccccccccccchhhhhhcCccCchh----hHHHHHHhhhccCC-CCCEEECCCCcCChH
Confidence            3456666555443311  1122356788999999999999872000    0112222322  24 79999999998753 


Q ss_pred             ----CCCCC-C-CCCceEEEcCCCccccc
Q 036903          295 ----LPTNL-I-TDKLVVLNLPCSNVELL  317 (323)
Q Consensus       295 ----LP~~i-~-L~~L~~L~l~~~~i~~l  317 (323)
                          +...+ . +.+|++|+|++|.+.+-
T Consensus       289 ~~~~l~~~l~~~~~~L~~L~l~~N~~~~~  317 (344)
T d2ca6a1         289 AVRTLKTVIDEKMPDLLFLELNGNRFSEE  317 (344)
T ss_dssp             HHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHHHHHHHHHccCCCCCEEECCCCcCCCc
Confidence                55555 3 78899999999987653

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=89.34  E-value=0.65  Score=36.89  Aligned_cols=55  Identities=13%  Similarity=0.027  Sum_probs=41.7

Q ss_pred             cceEEcCCCCHHhHHHHHHHhhhcCCCCCCChHHHHHHHHHHhcCCchhHHHHhhhhcC
Q 036903           35 TNIYKVRGLNYSEALELFCNFAFKQSNCPDGLFTLSKHIVGYCKGNPLALRVLGSFLHR   93 (323)
Q Consensus        35 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLAi~~ig~~L~~   93 (323)
                      ...+.|++++.+++.+++.+..-......++    .++|.+.++|.|..+..+|..+..
T Consensus       200 ~~~i~L~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~~~G~P~~L~~~~~~~~~  254 (283)
T d2fnaa2         200 FSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKIGGIPGWLTYFGFIYLD  254 (283)
T ss_dssp             CEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred             eeEEeeCCCCHHHHHHHHHhhhhhcCCCHHH----HHHHHHHhCCCHHHHHHHHHHHHh
Confidence            3568999999999999998865332222222    568999999999999999876643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.46  E-value=0.064  Score=40.50  Aligned_cols=88  Identities=13%  Similarity=0.044  Sum_probs=43.7

Q ss_pred             ceeEEEEeecCCccc--cccCchhhhCCCCceEEEEeCCCCCCCCCCCcccccCCCccCcCCCceeEEecCCCCCCCCC-
Q 036903          221 DVIAGIFLDLSKIRD--IHLGSRAFENMTNLRLLKFYLPNRRGDPIMSSKVHLDQGLDYLPEELTYLHWHGYPLRTLPT-  297 (323)
Q Consensus       221 ~~~~~l~~~~~~~~~--l~~~~~~~~~~~~LrvL~L~~~~~~~~~~~~~~~~lp~~i~~L~~~Lr~L~l~~~~i~~LP~-  297 (323)
                      ..++.+.+....+..  .......+...+.|+.|+|++|.+...    ....+-..+..-+ .|++|+++++.+..+.. 
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~----g~~~l~~aL~~n~-sL~~L~l~~n~~~~~g~~  118 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE----LLARLLRSTLVTQ-SIVEFKADNQRQSVLGNQ  118 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH----HHHHHHHHTTTTC-CCSEEECCCCSSCCCCHH
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH----HHHHHHHHHHhCC-cCCEEECCCCcCCCccHH
Confidence            345555544433321  122234455666777777777765200    0012333444445 67777777665554432 


Q ss_pred             -------CCC-CCCceEEEcCCCc
Q 036903          298 -------NLI-TDKLVVLNLPCSN  313 (323)
Q Consensus       298 -------~i~-L~~L~~L~l~~~~  313 (323)
                             .+. -+.|+.|+++.+.
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhCCCccEeeCcCCC
Confidence                   122 4556667766553