Citrus Sinensis ID: 036944

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
MDFDSGNPLHSFEQQALEKFFNEERESMAAEGYAVSKEATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYEMCMDKQILLERNEKLKLGPQRKVEAGETSSSMLSKDPLQDILHRPGKGPIQEISEIVLEIPETRMEPDESDNEPGLSFELKWRLWSSDNPEDDIIIDSPLFRPPVPIFDPNDGTDQAQAGHNSTSFVQCINCILM
cccccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHccccccccEEEccccccccccccccccccHHHHcccccccHHHHHHHHcc
ccccccccHHHHHHHHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcccHccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHcccHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHccccccccccccccccccccccHHHHHHHcccccccccccEEEEEcccccccccccccccccEEEEEEEEEccccccccEEEcccccccccccEcccccccHHHccccccHHHHHHHHHcc
mdfdsgnplhsFEQQALEKFFNEERESMAAEGYAVSKEATLRKVALNVILknskcfnfdafiPYLAMNYFDLFisrnqlpnvlgrvRDDIVLAAICCLTLAWKVRNQAFRFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFfvgkipvgkgiMRRTLNEIIIQAQgdinftqykpsVMAASSLLTACRllypneynqcERDILATKHIKEEELESCLKRTYEMCMDKQILLERNeklklgpqrkveagetsssmlskdplqdilhrpgkgpiqEISEIVLeipetrmepdesdnepglsfELKWRlwssdnpeddiiidsplfrppvpifdpndgtdqaqaghnstSFVQCINCILM
mdfdsgnplhsfEQQALEKFFNEERESMAAEGYAVSKEATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFvgkipvgkgIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYEMCMDKQILLerneklklgpqrkveagetsssmlskdplqdilhrpgkgpiqEISEIVLEIPETRMEPDESDNEPGLSFELKWRLWSSDNPEDDIIIDSPLFRPPVPIFDPNDGTDQAQAGHNSTSFVQCINCILM
MDFDSGNPLHSFEQQALEKFFNEERESMAAEGYAVSKEATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYEMCMDKQILLERNEKLKLGPQRKVEAGETSSSMLSKDPLQDILHRPGKGPIQEISEIVLEIPETRMEPDESDNEPGLSFELKWRLWSSDNPEDDIIIDSPLFRPPVPIFDPNDGTDQAQAGHNSTSFVQCINCILM
********************************YAVSKEATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYEMCMDKQILLE*******************************************************************FELKWRLWSSDNPEDDIIIDSPLFRPPVPIF***************TSFVQCINCIL*
*DFDSGNPLHSFEQQALEKFFNEERESMAAEGYAVSKEATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYE*****************************************************************************FELKWRLWSSDNPEDDIIIDSPLF********************NSTSFVQCINCILM
MDFDSGNPLHSFEQQALEKFFNEERESMAAEGYAVSKEATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYEMCMDKQILLERNEKLKLGP***************KDPLQDILHRPGKGPIQEISEIVLEIPET************LSFELKWRLWSSDNPEDDIIIDSPLFRPPVPIFDPNDGTDQAQAGHNSTSFVQCINCILM
****SGNPLHSFEQQALEKFFNEERESMAAEGYAVSKEATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYEMCMDKQI**E*********QRKVEAGETSSSMLSKDPLQDILHRPGKGPIQEISEIVLEIPETRMEPDESDNEPGLSFELKWRLWSSDNPEDDIIIDSPLFRPPVPIFDPNDGTDQ******STSFVQCINCILM
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MDFDSGNPLHSFEQQALEKFFNEERESMAAEGYAVSKEATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYEMCMDKQILLERNEKLKLGPQRKVEAGETSSSMLSKDPLQDILHRPGKGPIQEISEIVLEIPETRMEPDESDNEPGLSFELKWRLWSSDNPEDDIIIDSPLFRPPVPIFDPNDGTDQAQAGHNSTSFVQCINCILM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query370 2.2.26 [Sep-21-2011]
P42751339 Cyclin-D1-1 OS=Arabidopsi yes no 0.521 0.569 0.300 2e-13
Q9ZR04302 Putative cyclin-D6-1 OS=A no no 0.513 0.629 0.271 6e-13
Q0J233308 Cyclin-D2-1 OS=Oryza sati yes no 0.410 0.493 0.321 1e-11
Q8LGA1308 Cyclin-D4-1 OS=Arabidopsi no no 0.416 0.5 0.298 1e-10
Q8LHA8356 Cyclin-D2-2 OS=Oryza sati yes no 0.378 0.393 0.309 5e-10
Q4KYM5383 Cyclin-D4-2 OS=Oryza sati no no 0.364 0.352 0.286 7e-10
P42753376 Cyclin-D3-1 OS=Arabidopsi no no 0.621 0.611 0.233 2e-09
Q8H339354 Cyclin-D1-2 OS=Oryza sati no no 0.397 0.415 0.296 4e-09
Q69QB8342 Cyclin-D3-1 OS=Oryza sati no no 0.518 0.561 0.276 5e-09
Q90459291 G1/S-specific cyclin-D1 O yes no 0.370 0.470 0.305 1e-08
>sp|P42751|CCD11_ARATH Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3 Back     alignment and function desciption
 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 13/206 (6%)

Query: 1   MDFDSGNPLHSFEQQALEKFFNEERESMAAEGY-----AVSKEATLRKVALNVILKNSKC 55
           +DF S   + S+   ++  F  +ER  +    Y       S +A+ R+ ++  ILK    
Sbjct: 37  VDFSSSE-VDSWPGDSIACFIEDERHFVPGHDYLSRFQTRSLDASAREDSVAWILKVQAY 95

Query: 56  FNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFE 115
           +NF     YLA+NY D F+   +LP   G     + L A+ CL+LA K+       ++  
Sbjct: 96  YNFQPLTAYLAVNYMDRFLYARRLPETSGW---PMQLLAVACLSLAAKMEEILVPSLFDF 152

Query: 116 RDNNLNEDYK-RHILSMELQILKGINWRLRAVTAMYFKEFFVGKI-PVGK--GIMRRTLN 171
           +   +   ++ + I  MEL +L  ++WRLR+VT   F  FF  KI P G   G       
Sbjct: 153 QVAGVKYLFEAKTIKRMELLVLSVLDWRLRSVTPFDFISFFAYKIDPSGTFLGFFISHAT 212

Query: 172 EIIIQAQGDINFTQYKPSVMAASSLL 197
           EII+    + +F +Y PS +AA+++L
Sbjct: 213 EIILSNIKEASFLEYWPSSIAAAAIL 238
May activate cell cycle in the root apical meristem (RAM) and promote embryonic root (radicle) protrusion.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9ZR04|CCD61_ARATH Putative cyclin-D6-1 OS=Arabidopsis thaliana GN=CYCD6-1 PE=3 SV=1 Back     alignment and function description
>sp|Q0J233|CCD21_ORYSJ Cyclin-D2-1 OS=Oryza sativa subsp. japonica GN=CYCD2-1 PE=3 SV=2 Back     alignment and function description
>sp|Q8LGA1|CCD41_ARATH Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2 Back     alignment and function description
>sp|Q8LHA8|CCD22_ORYSJ Cyclin-D2-2 OS=Oryza sativa subsp. japonica GN=CYCD2-2 PE=2 SV=1 Back     alignment and function description
>sp|Q4KYM5|CCD42_ORYSJ Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2 Back     alignment and function description
>sp|P42753|CCD31_ARATH Cyclin-D3-1 OS=Arabidopsis thaliana GN=CYCD3-1 PE=1 SV=3 Back     alignment and function description
>sp|Q8H339|CCD12_ORYSJ Cyclin-D1-2 OS=Oryza sativa subsp. japonica GN=CYCD1-2 PE=3 SV=2 Back     alignment and function description
>sp|Q69QB8|CCD31_ORYSJ Cyclin-D3-1 OS=Oryza sativa subsp. japonica GN=CYCD3-1 PE=2 SV=2 Back     alignment and function description
>sp|Q90459|CCND1_DANRE G1/S-specific cyclin-D1 OS=Danio rerio GN=ccnd1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
357452443423 Cyclin-D1-1 [Medicago truncatula] gi|355 0.664 0.581 0.338 4e-30
224078830305 predicted protein [Populus trichocarpa] 0.618 0.750 0.333 1e-25
225447693294 PREDICTED: putative cyclin-D6-1 [Vitis v 0.618 0.778 0.309 2e-24
296081259315 unnamed protein product [Vitis vinifera] 0.618 0.726 0.309 3e-24
224114109309 predicted protein [Populus trichocarpa] 0.613 0.734 0.318 1e-23
255567453305 cyclin d, putative [Ricinus communis] gi 0.627 0.760 0.306 1e-23
297745660407 unnamed protein product [Vitis vinifera] 0.586 0.533 0.327 1e-23
359495729327 PREDICTED: putative cyclin-D6-1-like, pa 0.597 0.675 0.321 2e-23
359359238324 D6-type cyclin [Populus x canadensis] 0.629 0.719 0.314 3e-23
224146705324 predicted protein [Populus trichocarpa] 0.629 0.719 0.314 1e-22
>gi|357452443|ref|XP_003596498.1| Cyclin-D1-1 [Medicago truncatula] gi|355485546|gb|AES66749.1| Cyclin-D1-1 [Medicago truncatula] Back     alignment and taxonomy information
 Score =  138 bits (347), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/272 (33%), Positives = 150/272 (55%), Gaps = 26/272 (9%)

Query: 13  EQQALEKFFNEERESMAA-EGYAVSKEATLRKVALNVILKNSKCFNFDAFIPYLAMNYFD 71
           E + ++ +FN E E +AA + +    +   R +A+++I K S+  + D+FIPYLAMNYFD
Sbjct: 15  ELEIIKNYFNVESEFIAATDTFTTPHDILFRNLAVSIIAKLSRSDDPDSFIPYLAMNYFD 74

Query: 72  LFISRNQL--PNVLGRVRDDIV-LAAICCLTLAWKVRNQAF---RFIYFERDNNLNEDYK 125
            F+S+++L   +V GR   + V L A+ CLT++ K+R  +F   RF+      NL  D  
Sbjct: 75  RFLSQHKLNLEDVEGRTETERVRLIAVSCLTISSKMRTNSFSVDRFL-----ENLYRDMN 129

Query: 126 RHI-----LSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGKGIMRRTLNEIIIQAQGD 180
             I     + MEL IL+ + W +R+VTA  F   +        G  RR++NEII+QAQG+
Sbjct: 130 VRITPPMVMRMELLILQELQWAMRSVTAFCFLNHYYPYFKKFCGFKRRSINEIIVQAQGE 189

Query: 181 INFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLKRTYEMCMDK 240
             F  Y PS +A S+ L A +  YP++Y++   DI  +K   + +++ C+K+  ++C   
Sbjct: 190 HTFAHYMPSHIAISAFLAAAQTKYPSKYSEIAEDI-KSKIGLQGQVKECVKKMVDLCNRL 248

Query: 241 QILLERNE--------KLKLGPQRKVEAGETS 264
            I +E  E        K+   PQ +++   TS
Sbjct: 249 NIQIESTEPGTRSTTSKVAAVPQEEIKEAGTS 280

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224078830|ref|XP_002305644.1| predicted protein [Populus trichocarpa] gi|159025731|emb|CAN88866.1| D6-type cyclin [Populus trichocarpa] gi|222848608|gb|EEE86155.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225447693|ref|XP_002276869.1| PREDICTED: putative cyclin-D6-1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296081259|emb|CBI18003.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224114109|ref|XP_002316670.1| predicted protein [Populus trichocarpa] gi|159025733|emb|CAN88867.1| D6-type cyclin [Populus trichocarpa] gi|222859735|gb|EEE97282.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255567453|ref|XP_002524706.1| cyclin d, putative [Ricinus communis] gi|223536067|gb|EEF37725.1| cyclin d, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297745660|emb|CBI40871.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359495729|ref|XP_002267937.2| PREDICTED: putative cyclin-D6-1-like, partial [Vitis vinifera] Back     alignment and taxonomy information
>gi|359359238|gb|AEV41137.1| D6-type cyclin [Populus x canadensis] Back     alignment and taxonomy information
>gi|224146705|ref|XP_002326106.1| predicted protein [Populus trichocarpa] gi|159025735|emb|CAN88868.1| D6-type cyclin [Populus trichocarpa] gi|222862981|gb|EEF00488.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
TAIR|locus:2020663339 CYCD1;1 "CYCLIN D1;1" [Arabido 0.521 0.569 0.300 6.5e-13
TAIR|locus:2125522302 CYCD6;1 "AT4G03270" [Arabidops 0.513 0.629 0.271 4.4e-12
TAIR|locus:2124331376 CYCD3;1 "CYCLIN D3;1" [Arabido 0.629 0.619 0.228 2.7e-09
UNIPROTKB|A5A422295 I79_018318 "G1/S-specific cycl 0.556 0.698 0.271 6.6e-09
ZFIN|ZDB-GENE-980526-176291 ccnd1 "cyclin D1" [Danio rerio 0.5 0.635 0.280 2.4e-08
RGD|68384295 Ccnd1 "cyclin D1" [Rattus norv 0.556 0.698 0.267 2.5e-08
TAIR|locus:2142504298 CYCD4;2 "AT5G10440" [Arabidops 0.510 0.634 0.274 2.6e-08
TAIR|locus:2120081323 CYCD5;1 "AT4G37630" [Arabidops 0.410 0.470 0.255 5.6e-08
MGI|MGI:88313295 Ccnd1 "cyclin D1" [Mus musculu 0.570 0.715 0.268 7.3e-08
UNIPROTKB|P50755291 ccnd1 "G1/S-specific cyclin-D1 0.467 0.594 0.287 9.1e-08
TAIR|locus:2020663 CYCD1;1 "CYCLIN D1;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 193 (73.0 bits), Expect = 6.5e-13, P = 6.5e-13
 Identities = 62/206 (30%), Positives = 101/206 (49%)

Query:     1 MDFDSGNPLHSFEQQALEKFFNEERESMAAEGYAV-----SKEATLRKVALNVILKNSKC 55
             +DF S   + S+   ++  F  +ER  +    Y       S +A+ R+ ++  ILK    
Sbjct:    37 VDFSSSE-VDSWPGDSIACFIEDERHFVPGHDYLSRFQTRSLDASAREDSVAWILKVQAY 95

Query:    56 FNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRNQAFRFIYFE 115
             +NF     YLA+NY D F+   +LP   G     + L A+ CL+LA K+       ++  
Sbjct:    96 YNFQPLTAYLAVNYMDRFLYARRLPETSGW---PMQLLAVACLSLAAKMEEILVPSLFDF 152

Query:   116 RDNNLNEDYK-RHILSMELQILKGINWRLRAVTAMYFKEFFVGKI-PVGK--GIMRRTLN 171
             +   +   ++ + I  MEL +L  ++WRLR+VT   F  FF  KI P G   G       
Sbjct:   153 QVAGVKYLFEAKTIKRMELLVLSVLDWRLRSVTPFDFISFFAYKIDPSGTFLGFFISHAT 212

Query:   172 EIIIQAQGDINFTQYKPSVMAASSLL 197
             EII+    + +F +Y PS +AA+++L
Sbjct:   213 EIILSNIKEASFLEYWPSSIAAAAIL 238
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS
GO:0051726 "regulation of cell cycle" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0010440 "stomatal lineage progression" evidence=RCA
GO:0042023 "DNA endoreduplication" evidence=RCA
GO:0045736 "negative regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=RCA
TAIR|locus:2125522 CYCD6;1 "AT4G03270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124331 CYCD3;1 "CYCLIN D3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A5A422 I79_018318 "G1/S-specific cyclin-D1" [Cricetulus griseus (taxid:10029)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-980526-176 ccnd1 "cyclin D1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|68384 Ccnd1 "cyclin D1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TAIR|locus:2142504 CYCD4;2 "AT5G10440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120081 CYCD5;1 "AT4G37630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:88313 Ccnd1 "cyclin D1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P50755 ccnd1 "G1/S-specific cyclin-D1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 3e-06
cd0004388 cd00043, CYCLIN, Cyclin box fold 8e-04
pfam02984117 pfam02984, Cyclin_C, Cyclin, C-terminal domain 8e-04
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score = 45.6 bits (109), Expect = 3e-06
 Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 14/107 (13%)

Query: 42  RKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLA 101
           R + ++ +++  + F       YLA+NY D F+S+  +P      R  + L  + CL +A
Sbjct: 31  RAILIDWLVEVHEEFKLLPETLYLAVNYLDRFLSKQPVP------RTKLQLVGVTCLLIA 84

Query: 102 WKVRN----QAFRFIYFERDNNLNEDYKRHILSMELQILKGINWRLR 144
            K           F+Y   DN      K  IL MEL IL  +NW L 
Sbjct: 85  AKYEEIYPPSVEDFVYIT-DNAYT---KEEILRMELLILSTLNWDLS 127

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|217307 pfam02984, Cyclin_C, Cyclin, C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 370
KOG0656335 consensus G1/S-specific cyclin D [Cell cycle contr 100.0
KOG0655408 consensus G1/S-specific cyclin E [Cell cycle contr 100.0
KOG0653391 consensus Cyclin B and related kinase-activating p 100.0
COG5024440 Cyclin [Cell division and chromosome partitioning] 100.0
KOG0654359 consensus G2/Mitotic-specific cyclin A [Cell cycle 99.96
TIGR00569305 ccl1 cyclin ccl1. University). 99.95
KOG0834323 consensus CDK9 kinase-activating protein cyclin T 99.92
KOG0794264 consensus CDK8 kinase-activating protein cyclin C 99.92
KOG0835367 consensus Cyclin L [General function prediction on 99.9
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.9
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.82
KOG2496325 consensus Cdk activating kinase (CAK)/RNA polymera 99.68
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.58
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.52
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.43
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.37
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 98.93
KOG1597308 consensus Transcription initiation factor TFIIB [T 98.84
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.43
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.41
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.18
KOG4164497 consensus Cyclin ik3-1/CABLES [Cell cycle control, 97.83
KOG1598 521 consensus Transcription initiation factor TFIIIB, 97.36
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 96.48
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 96.26
KOG1674218 consensus Cyclin [General function prediction only 95.21
PRK00423310 tfb transcription initiation factor IIB; Reviewed 94.26
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 82.3
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 80.9
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 80.03
>KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=7.4e-39  Score=310.34  Aligned_cols=215  Identities=28%  Similarity=0.514  Sum_probs=193.6

Q ss_pred             HHHHHHHHHHHHHhhcCCCCcccCCc----HHHHHHHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCCccCCcccCccc
Q 036944           13 EQQALEKFFNEERESMAAEGYAVSKE----ATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRD   88 (370)
Q Consensus        13 ~~dil~~Ll~~E~~~~p~~~y~~~~q----~~~R~~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v~~~~~~~~~   88 (370)
                      .+|++.+|+++|+++.|..+|+...+    +.+|...++||.+||.++++.++|+++|+||||||++...++.+++|+  
T Consensus        45 ~e~~i~~ll~kEe~~~p~~~~~~~~~~~~~~~~R~~A~~WIl~V~~~~~~~~~~~~LA~NYlDRFls~~~l~k~k~W~--  122 (335)
T KOG0656|consen   45 DERVLANLLEKEEQHNPSLDYFLCVQKLILSSMRKQALDWILKVCEEYNFEPLVFLLAMNYLDRFLSSQKLPKDKPWM--  122 (335)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhhhcccccccHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhhcccccCCCchHH--
Confidence            48999999999999999998665554    889999999999999999999999999999999999999999999999  


Q ss_pred             cchhhHHHHHHHHHHhhccCCch-hHHhhcC-CCCCCcHHHHHHHHHHHHHHcCCcccccChHHHHHHHHhhCCC---Ch
Q 036944           89 DIVLAAICCLTLAWKVRNQAFRF-IYFERDN-NLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPV---GK  163 (370)
Q Consensus        89 ~lqLiavtCL~IAsKvEE~~~pl-~~l~~~~-~~~yt~~~~Il~mE~~IL~~L~w~L~~pTp~~Fl~~fl~~l~~---~~  163 (370)
                       +||+|+|||+||||+||+.+|+ .+++... .+.|. ++.|.+||..||.+|+|+++.+||++|+++|+.+++.   ..
T Consensus       123 -lQLlAvaCLsLAsKmeE~~vPll~dl~v~~~~~~fe-aktI~rmELLVLstL~Wrl~aVTP~sF~~~fl~ki~~~~~~~  200 (335)
T KOG0656|consen  123 -LQLLAVACLSLASKMEETDVPLLADLQVEYTDNVFE-AKTIQRMELLVLSTLKWRLRAVTPFSFIDHFLSKISQKDHNK  200 (335)
T ss_pred             -HHHHHHHHHHHHHhhcCcCCchhhhhhhcccccccc-HHHHHHHHHHHHhhccccccCCCchHHHHHHHHHcCcccchH
Confidence             9999999999999999999875 8888766 47899 9999999999999999999999999999999999954   24


Q ss_pred             HHHHHHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCCCCCCcchHHHHhhcCCCHHHHHHHHH
Q 036944          164 GIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKHIKEEELESCLK  231 (370)
Q Consensus       164 ~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~~~~~~~~~~l~~~~~~~~e~L~~C~~  231 (370)
                      ..+...+..++..+..|..|+.|+||+||+|++..+...+...........+..+++++.+.+..|+.
T Consensus       201 ~~~~~~~s~~ll~~~~d~~Fl~y~pSviAaa~~~~v~~~~~~l~~~~~~~~~~~~~~l~~e~~~~~~~  268 (335)
T KOG0656|consen  201 HLFLKHASLFLLSVITDIKFLEYPPSVIAAAAILSVSASVDGLDFREYENNLLSLLSLSKEKVNRCYD  268 (335)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHhhcchhhhhhhHHHHHHHHhhHHhhhcchh
Confidence            56788999999999999999999999999999988888766655444456677788899999999998

>KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] Back     alignment and domain information
>KOG0835 consensus Cyclin L [General function prediction only] Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>KOG1597 consensus Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1674 consensus Cyclin [General function prediction only] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 2e-18
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 3e-17
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 6e-16
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 9e-16
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 1e-14
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 2e-14
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 2e-12
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 6e-11
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 1e-09
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 6e-08
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 7e-08
2ivx_A257 Cyclin-T2; transcription regulation, cell division 1e-06
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 1e-04
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 5e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
 Score = 83.7 bits (207), Expect = 2e-18
 Identities = 44/252 (17%), Positives = 92/252 (36%), Gaps = 23/252 (9%)

Query: 2   DFDSGNPLHSFEQQALEKFFNEERESMAAEGYAVSKEATL----RKVALNVILKNSKCFN 57
                +P    +Q+ L+     E   +    Y    +  +    RK+    +L+  +   
Sbjct: 27  PRAGPDPRLLGDQRVLQSLLRLEERYVPRASYFQCVQREIKPHMRKMLAYWMLEVCEEQR 86

Query: 58  FDAFIPYLAMNYFDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRN----QAFRFIY 113
            +  +  LAMNY D ++S           +  + L    C+ LA K+R        +   
Sbjct: 87  CEEEVFPLAMNYLDRYLSCVPTR------KAQLQLLGAVCMLLASKLRETTPLTIEKLCI 140

Query: 114 FERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGKIPVGK---GIMRRTL 170
              D+ ++      +   E+ +L  + W L AV A  F  F + ++ + +    ++++  
Sbjct: 141 -YTDHAVSPR---QLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLSLPRDRQALVKKHA 196

Query: 171 NEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNEYNQCERDILATKH--IKEEELES 228
              +     D  F  Y PS++A  S+  A + L     +  E   L       + + L +
Sbjct: 197 QTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRA 256

Query: 229 CLKRTYEMCMDK 240
           C ++      + 
Sbjct: 257 CQEQIEAALRES 268
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 100.0
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 99.98
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.94
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.88
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.72
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.34
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 97.96
1ais_B200 TFB TFIIB, protein (transcription initiation facto 96.34
1c9b_A207 General transcription factor IIB; protein-DNA comp 95.53
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 93.4
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 91.24
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 90.48
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 87.89
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 84.33
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 83.96
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 83.28
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 81.14
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 80.3
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 80.07
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
Probab=100.00  E-value=2.5e-44  Score=339.92  Aligned_cols=227  Identities=13%  Similarity=0.131  Sum_probs=198.1

Q ss_pred             CCCCCCcCcHHHHHHHHHHHHHhhcCCCCcccCCc----HHHHHHHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCCcc
Q 036944            4 DSGNPLHSFEQQALEKFFNEERESMAAEGYAVSKE----ATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQL   79 (370)
Q Consensus         4 d~~~pl~~~~~dil~~Ll~~E~~~~p~~~y~~~~q----~~~R~~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v   79 (370)
                      |..||.-..++||+. |+++|.++.|+.+|+...|    +.||.++|+||++|+.+|+++++|+|+||+|+|||+++..+
T Consensus        11 ~~~dp~l~~~~~i~~-l~~~E~~~~p~~~y~~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~v   89 (254)
T 2f2c_A           11 AKIDSTTMKDPRVLN-NLKLRELLLPKFTSLWEIQTEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQG   89 (254)
T ss_dssp             CCCCHHHHTCHHHHH-HHHHHHTTSCCCSSTTTTCSSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSCC
T ss_pred             CCCCcccccHHHHHH-HHHHHHhhCCCchhhhhcCccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCCc
Confidence            455776655689999 9999999999999986333    99999999999999999999999999999999999999998


Q ss_pred             CCcccCccccchhhHHHHHHHHHHhhccCCc-hhHHhhcCCCCCCcHHHHHHHHHHHHHHcCCcccccChHHHHHHHHhh
Q 036944           80 PNVLGRVRDDIVLAAICCLTLAWKVRNQAFR-FIYFERDNNLNEDYKRHILSMELQILKGINWRLRAVTAMYFKEFFVGK  158 (370)
Q Consensus        80 ~~~~~~~~~~lqLiavtCL~IAsKvEE~~~p-l~~l~~~~~~~yt~~~~Il~mE~~IL~~L~w~L~~pTp~~Fl~~fl~~  158 (370)
                      .      +.++||+|+||||||||+||..+| +.+|.......|+ +++|++||+.||++|+|+++.|||++|+..|+..
T Consensus        90 ~------~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~-~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~  162 (254)
T 2f2c_A           90 T------KKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFT-NLELINQEKDILEALKWDTEAVLATDFLIPLCNA  162 (254)
T ss_dssp             C------TTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CC-HHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHHH
T ss_pred             C------HHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCC-HHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHHH
Confidence            8      888999999999999999998775 7888643334599 9999999999999999999999999999999999


Q ss_pred             CCCCh---HHHHHHHHHHHHHhcccccccCcchHHHHHHHHHHHHHHhCCCC--CCcchHHHHhhcCCCHHHHHHHHHHH
Q 036944          159 IPVGK---GIMRRTLNEIIIQAQGDINFTQYKPSVMAASSLLTACRLLYPNE--YNQCERDILATKHIKEEELESCLKRT  233 (370)
Q Consensus       159 l~~~~---~~l~~~a~~ll~~sl~d~~~l~y~PS~IAaAaI~lA~~~l~~~~--~~~~~~~l~~~~~~~~e~L~~C~~~m  233 (370)
                      ++...   ..++..|++++++++.++.|++|+||.||||||++|+...+...  |..|.+.+..++|++.++|.+|++.|
T Consensus       163 ~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~~i  242 (254)
T 2f2c_A          163 LKIPEDLWPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKDQV  242 (254)
T ss_dssp             TTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             cCCChhhHHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            86543   23567899999999999999999999999999999999853322  22237888999999999999999999


Q ss_pred             HHHHh
Q 036944          234 YEMCM  238 (370)
Q Consensus       234 ~~l~~  238 (370)
                      .+++.
T Consensus       243 ~~~~~  247 (254)
T 2f2c_A          243 SEAFS  247 (254)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99975
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 370
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 3e-10
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 7e-10
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 3e-09
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 6e-09
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 3e-08
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 3e-08
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 1e-07
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 5e-07
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Murine herpesvirus 68 [TaxId: 33708]

 Score = 55.7 bits (134), Expect = 3e-10
 Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 15/137 (10%)

Query: 13  EQQALEKFFNEERESMAAEGYA-VSKEAT--LRKVALNVILKNSKCFNFDAFIPYLAMNY 69
           E+   +  +  ERE  A      V +  T   RKV    +    K    D  +  LA+  
Sbjct: 12  EEDCRQMIYRSEREHDARMVGVNVDQHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVAL 71

Query: 70  FDLFISRNQLPNVLGRVRDDIVLAAICCLTLAWKVRN---QAFRFIYFERDNNLNEDYKR 126
            D      ++       R++    A   L +A KVR         + +            
Sbjct: 72  LDELFLSTRID------RENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATT---AD 122

Query: 127 HILSMELQILKGINWRL 143
            +L++E++ L  ++W  
Sbjct: 123 KLLTLEVKSLDTLSWVA 139
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.96
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.96
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.96
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.94
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.93
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.83
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.82
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.78
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.5
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.04
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.03
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 98.63
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 98.09
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.86
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.82
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 97.79
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.76
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.27
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.24
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.23
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 96.49
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 92.93
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 86.16
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 83.68
d1f5qb2106 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 82.09
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 80.89
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: Viral cyclin
species: Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]

Probab=99.96  E-value=5.2e-30  Score=217.56  Aligned_cols=125  Identities=15%  Similarity=0.250  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCcccCCc----HHHHHHHHHHHHHhHHhcCCCchHHHHHHHHHHHHhcCCccCCcccCccc
Q 036944           13 EQQALEKFFNEERESMAAEGYAVSKE----ATLRKVALNVILKNSKCFNFDAFIPYLAMNYFDLFISRNQLPNVLGRVRD   88 (370)
Q Consensus        13 ~~dil~~Ll~~E~~~~p~~~y~~~~q----~~~R~~lvdWl~~V~~~~~l~~eTl~lAv~y~DRfLs~~~v~~~~~~~~~   88 (370)
                      +++++++|++.|.++.|..+|+...|    +.+|..+|+||.+|+..|+++.+|+|+||+|||||+++..++      ++
T Consensus         3 ~~~i~~~l~~~E~~~~p~~~y~~~~q~~it~~~R~~lidWl~~v~~~~~l~~et~~lAv~llDrfls~~~v~------~~   76 (132)
T d1g3nc1           3 EDRIFYNILEIEPRFLTSDSVFGTFQQSLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRLLLIKQVS------KE   76 (132)
T ss_dssp             HHHHHHHHHHHGGGGCCCGGGHHHHTSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCC------HH
T ss_pred             hHHHHHHHHHHHHHHCCChHHHHhcCccCCHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCcccCc------HH
Confidence            57999999999999999999997755    999999999999999999999999999999999999999998      88


Q ss_pred             cchhhHHHHHHHHHHhhccCCc-hhHHhhcCCCCCCcHHHHHHHHHHHHHHcCCccc
Q 036944           89 DIVLAAICCLTLAWKVRNQAFR-FIYFERDNNLNEDYKRHILSMELQILKGINWRLR  144 (370)
Q Consensus        89 ~lqLiavtCL~IAsKvEE~~~p-l~~l~~~~~~~yt~~~~Il~mE~~IL~~L~w~L~  144 (370)
                      ++|++|+|||+||+|+||..+| +.++..-....|+ +++|++||..||++|+|++.
T Consensus        77 ~lqLia~tcl~iAsK~ee~~~~~~~~l~~~~~~~~t-~~ei~~mE~~IL~~L~w~l~  132 (132)
T d1g3nc1          77 HFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFS-RQELIDQEKELLEKLAWRTE  132 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSC-HHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCCC-HHHHHHHHHHHHHHcCCcCC
Confidence            9999999999999999999875 6777543334599 99999999999999999973
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5qb2 a.74.1.1 (B:147-252) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure