Citrus Sinensis ID: 036967

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
WWKDLDFSTKLPYARDRIVDQMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
HHHHHcHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
wwkdldfstklpyaRDRIVDQMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGrssylrydkekvgn
Flexible Loop (DISEMBL)
wwkdldfstklpyardrIVDQMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAkegrssylrydkekvgn
Low Complexity Region (SEG)
WWKDLDFSTKLPYARDRIVDQMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN
Disordered region (IsUnstruct)
***DLDFSTKLPYARDRIVDQMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAK****************
Disordered Region (DISOPRED)
WWKDLDFSTKLPYARDRIVDQMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN
Disordered Region (DISEMBL)
WWKDLDFSTKLPYARDRIVDQMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN
Disordered Region (DISPRO)
WWKDLDFSTKLPYARDRIVDQMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
WWKDLDFSTKLPYARDRIVDQMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
Q6Q3H3	557	(-)-germacrene D synthase	yes	no	0.971	0.184	0.52	3e-28
Q39978	520	Vetispiradiene synthase 1	N/A	no	0.971	0.198	0.496	3e-26
Q9XJ32	556	Vetispiradiene synthase 1	N/A	no	0.952	0.181	0.504	6e-26
G5CV46	555	Viridiflorene synthase OS	N/A	no	0.952	0.181	0.495	8e-26
Q39979	300	Vetispiradiene synthase 2	N/A	no	0.952	0.336	0.487	3e-25
Q94JS8	560	(E)-beta-farnesene syntha	N/A	no	0.933	0.176	0.5	9e-25
E3W207	559	Sesquiterpene synthase OS	N/A	no	0.933	0.177	0.462	2e-24
Q8SA63	548	Beta-caryophyllene syntha	N/A	no	0.952	0.184	0.439	2e-24
Q39980	350	Vetispiradiene synthase 3	N/A	no	0.952	0.288	0.479	2e-24
Q39760	554	(+)-delta-cadinene syntha	N/A	no	0.924	0.176	0.475	6e-24

>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1

 Score =  123 bits (309), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/125 (52%), Positives = 84/125 (67%), Gaps = 22/125 (17%)

Query: 1   WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF+ KLP+ARDR+V+                    +TK+I MTSIIDD +D YG 
Sbjct: 259 WWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFFARRILTKVIAMTSIIDDIYDVYGT 318

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            EEL+LFTEAV+R+ I    A+D+LPEYM++ Y+ALL  Y+EIE+ +AKEGRS  L Y K
Sbjct: 319 LEELELFTEAVERWDI---SAIDQLPEYMRVCYQALLYVYSEIEEEMAKEGRSYRLYYAK 375

Query: 102 EKVGN 106
           E + N
Sbjct: 376 EAMKN 380

Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 7EC: 5

>sp|Q39978|VTSS1_HYOMU Vetispiradiene synthase 1 (Fragment) OS=Hyoscyamus muticus PE=1 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/129 (49%), Positives = 83/129 (64%), Gaps = 26/129 (20%)

Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF T LPYARDR V+                    + K I M SI+DDTFDAYGI
Sbjct: 222 WWKDLDFVTTLPYARDRAVECYFWTMGVYAEPQYSQARVMLAKTIAMISIVDDTFDAYGI 281

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            +EL+++T+A+QR+ I     +D+LPEYMKI YKALLD Y++ E+ L+K+GRS  + Y K
Sbjct: 282 VKELEVYTDAIQRWDI---SQIDRLPEYMKISYKALLDLYDDYEKELSKDGRSDVVHYAK 338

Query: 102 EK----VGN 106
           E+    VGN
Sbjct: 339 ERMKEIVGN 347

Sesquiterpene synthase that catalyzes the formation of vetispiradiene from trans,trans-farnesyl diphosphate. The initial internal cyclization produces the monocyclic intermediate germacrene A.

Hyoscyamus muticus (taxid: 35626)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 2

EC: 1

>sp|Q9XJ32|VTSS1_SOLTU Vetispiradiene synthase 1 OS=Solanum tuberosum GN=PVS1 PE=1 SV=1

 Score =  115 bits (289), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 62/123 (50%), Positives = 80/123 (65%), Gaps = 22/123 (17%)

Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF T LPYARDR V+                    + K I M SI+DDTFDAYGI
Sbjct: 258 WWKDLDFVTTLPYARDRAVECYFWTMGVYAEPQYSQARVMLAKTIAMISIVDDTFDAYGI 317

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            +EL+++T+A+QR+ I  I   D+LP+YMKI YKALLD YN+ E  L+K+GRS  + Y K
Sbjct: 318 VKELEIYTDAIQRWDISQI---DRLPDYMKISYKALLDLYNDYEMELSKDGRSDVVHYAK 374

Query: 102 EKV 104
           E++
Sbjct: 375 ERM 377

Sesquiterpene synthase that catalyzes the formation of vetispiradiene from trans,trans-farnesyl diphosphate. The initial internal cyclization produces the monocyclic intermediate germacrene A.

Solanum tuberosum (taxid: 4113)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 2

EC: 1

>sp|G5CV46|TPS31_SOLLC Viridiflorene synthase OS=Solanum lycopersicum GN=TPS31 PE=1 SV=1

 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 61/123 (49%), Positives = 80/123 (65%), Gaps = 22/123 (17%)

Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF T LPYARDR V+                    + K I M SI+DDTFDAYGI
Sbjct: 257 WWKDLDFVTTLPYARDRAVECYFWTMGVYAEPQYSQARVMLAKTIAMISIVDDTFDAYGI 316

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            +EL+++T+A+QR+ +  I   D+LPEYMKI YKALLD YN+ E  L+ +GRS  ++Y K
Sbjct: 317 VKELEVYTDAIQRWDVSQI---DRLPEYMKISYKALLDLYNDYETELSNDGRSDVVQYAK 373

Query: 102 EKV 104
           E++
Sbjct: 374 ERM 376

Sesquiterpene synthase involved in the production of viridiflorene from (E,E)-farnesyl diphosphate. Has no activity with (Z,Z)-FPP. Can act with a low efficiency as a monoterpene synthase with geranyl diphosphate as substrate.

Solanum lycopersicum (taxid: 4081)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 8

EC: 8

>sp|Q39979|VTSS2_HYOMU Vetispiradiene synthase 2 (Fragment) OS=Hyoscyamus muticus PE=1 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 80/123 (65%), Gaps = 22/123 (17%)

Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF T LPYARDR V+                    + K I M SI+DDTFDAYGI
Sbjct: 3   WWKDLDFVTTLPYARDRAVECYFWTMGVYAEPQYSQARVMLAKTIAMISIVDDTFDAYGI 62

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            +E +++T+A+QR+ I     +D+LPEYMKI YKALLD Y++ E+ L+K+GRS  + Y K
Sbjct: 63  VKEFEVYTDAIQRWDI---SQIDRLPEYMKISYKALLDLYDDYEKELSKDGRSDVVHYAK 119

Query: 102 EKV 104
           E++
Sbjct: 120 ERM 122

Sesquiterpene synthase that catalyzes the formation of vetispiradiene from trans,trans-farnesyl diphosphate. The initial internal cyclization produces the monocyclic intermediate germacrene A.

Hyoscyamus muticus (taxid: 35626)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 2

EC: 1

>sp|Q94JS8|FARS_CITJU (E)-beta-farnesene synthase OS=Citrus junos PE=1 SV=1

 Score =  112 bits (279), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 74/122 (60%), Gaps = 23/122 (18%)

Query: 1   WWKDLDFSTKLPYARDRIVDQ--------------------MTKLIYMTSIIDDTFDAYG 40
           WW DL F  K+PYARDRI++                      +K++ M + IDDTFDAYG
Sbjct: 260 WWNDLGFPKKVPYARDRIIETYIWMLLGVSYEPNLAFGRIFASKVVCMITTIDDTFDAYG 319

Query: 41  IFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYD 100
            FEEL LFTEAV R+ I   G +D LPEYMK + KALLD Y E E+ LAKEGRS  + Y 
Sbjct: 320 TFEELTLFTEAVTRWDI---GLIDTLPEYMKFIVKALLDIYREAEEELAKEGRSYGIPYA 376

Query: 101 KE 102
           K+
Sbjct: 377 KQ 378

Sesquiterpene cyclase catalyzing the production of beta-farnesene from farnesyl diphosphate.

Citrus junos (taxid: 135197)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 4

EC: 7

>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 76/121 (62%), Gaps = 22/121 (18%)

Query: 1   WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
           WW+ LDF+TK P+ARDR+V+                     TK+  M S IDD +DAYG 
Sbjct: 261 WWRSLDFATKFPFARDRLVEGYFWILGVYFEPQYSLAREITTKVFAMISTIDDIYDAYGT 320

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            +ELKLFTEA+QR+ +   G++D+LPEYMK  YK++LD YNEIE+ +A +G    + Y K
Sbjct: 321 LDELKLFTEAIQRWDV---GSLDQLPEYMKPCYKSILDVYNEIEEEMANQGSLFRMHYAK 377

Query: 102 E 102
           E
Sbjct: 378 E 378

Catalyzes alpha-humulene and delta-cadinene, as well as beta-elemene, the thermal rearrangement product of germacrene A and several other bicyclic sesquiterpenes when incubated with (2E,6E)-farnesyl diphosphate.

Santalum austrocaledonicum (taxid: 293154)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: -

>sp|Q8SA63|CARS_ARTAN Beta-caryophyllene synthase OS=Artemisia annua GN=QHS1 PE=1 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/123 (43%), Positives = 79/123 (64%), Gaps = 22/123 (17%)

Query: 1   WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
           WWK LD    LPYARDR+V+                    + K+I + +++DDT+DAYG 
Sbjct: 250 WWKGLDVPNNLPYARDRMVECYFWALGVYFEPKYSQARIFLAKVISLATVLDDTYDAYGT 309

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
           +EELK+FTEA+QR+ I  I   D LPEY+K+LY+ +LD Y E+E+++ KEG++ +L Y K
Sbjct: 310 YEELKIFTEAIQRWSITCI---DMLPEYLKLLYQGVLDIYIEMEEIMGKEGKAHHLSYAK 366

Query: 102 EKV 104
           E +
Sbjct: 367 ESM 369

Sesquiterpene synthase involved in the biosynthesis of beta-caryophyllene, a sesquiterpene with anti-inflammatory and anti-carcinogenic activities. Can use farnesyl diphosphate and (+)-chrysanthemyl diphosphate as substrates, but not geranylgeranyl diphosphate. Produces two irregular monoterpenes, yomogi alcohol and artemisia alcohol from (+)-chrysanthemyl diphosphate. Limited activity with geranyl diphosphate, leading to the production of limonene, terpinolene, beta-pinene, gamma-terpinene, alpha-terpinene and other minor products.

Artemisia annua (taxid: 35608)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 5

EC: 7

>sp|Q39980|VTSS3_HYOMU Vetispiradiene synthase 3 (Fragment) OS=Hyoscyamus muticus PE=1 SV=1

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 59/123 (47%), Positives = 78/123 (63%), Gaps = 22/123 (17%)

Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF T LPYARDR V+                    + K I M SI+DDTFDAYGI
Sbjct: 52  WWKDLDFVTTLPYARDRAVECYFWTVGVYAEPQYSEARVMLAKTIAMISIVDDTFDAYGI 111

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            +EL+++T+A+QR+ I     +D+LP+YMKI YK LLD Y + E  L+K+GRS  + Y K
Sbjct: 112 VKELEVYTDAIQRWDI---NQIDRLPDYMKISYKVLLDLYKDYETELSKDGRSEVVHYAK 168

Query: 102 EKV 104
           E++
Sbjct: 169 ERM 171

Sesquiterpene synthase that catalyzes the formation of vetispiradiene from trans,trans-farnesyl diphosphate. The initial internal cyclization produces the monocyclic intermediate germacrene A.

Hyoscyamus muticus (taxid: 35626)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 2

EC: 1

>sp|Q39760|DCS2_GOSAR (+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1

 Score =  109 bits (272), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 57/120 (47%), Positives = 76/120 (63%), Gaps = 22/120 (18%)

Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF  KLPYARDR+V+                    +TK+I M SI+DDT+D+Y  
Sbjct: 256 WWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYAT 315

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
           +EEL  +T+A++R+ I     +D+LPEYMK  YKALLD Y E+EQ++AK GR   + Y K
Sbjct: 316 YEELIPYTKAIERWDI---KCIDELPEYMKPSYKALLDVYEEMEQLVAKHGRQYRVEYAK 372

Responsible for the cyclization of trans,trans-farnesyl diphosphate (FPP) to (+)-delta cadinene.

Gossypium arboreum (taxid: 29729)

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
9864189	555	terpene synthase [Citrus junos]	0.952	0.181	0.674	1e-35
147775402	520	hypothetical protein VITISV_029939 [Viti	0.952	0.194	0.580	5e-29
261343328	548	terpene synthase 1 [Citrus sinensis]	0.943	0.182	0.557	6e-29
33316389	548	valencene synthase [Citrus sinensis]	0.943	0.182	0.557	6e-29
19880625	548	putative terpene synthase [Citrus x para	0.943	0.182	0.557	7e-29
347664489	557	(E)-beta-caryophyllene synthase [Vitis v	0.971	0.184	0.52	5e-27
302143186	365	unnamed protein product [Vitis vinifera]	0.971	0.282	0.512	6e-27
359493937	557	PREDICTED: (-)-germacrene D synthase [Vi	0.971	0.184	0.52	1e-26
147828675	557	hypothetical protein VITISV_013313 [Viti	0.971	0.184	0.52	1e-26
147856860	557	hypothetical protein VITISV_030783 [Viti	0.971	0.184	0.52	1e-26

>gi|9864189|gb|AAG01339.1| terpene synthase [Citrus junos]

 Score =  153 bits (386), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/123 (67%), Positives = 89/123 (72%), Gaps = 22/123 (17%)

Query: 1   WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF+TKLPYARDRIV+                    MTK IY  SIIDDTFDAYG 
Sbjct: 258 WWKDLDFTTKLPYARDRIVELYFWIVGTYFEPKYTLARKIMTKTIYTASIIDDTFDAYGF 317

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
           FEELKLF EAVQR+ I   GAMD LPEYMK+LYKALLDT+NEIEQ LAKEGRSS L Y K
Sbjct: 318 FEELKLFAEAVQRWDI---GAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSCLPYGK 374

Query: 102 EKV 104
           EK+
Sbjct: 375 EKM 377

Source: Citrus junos

Species: Citrus junos

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775402|emb|CAN60658.1| hypothetical protein VITISV_029939 [Vitis vinifera]

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 65/112 (58%), Positives = 84/112 (75%), Gaps = 11/112 (9%)

Query: 1   WWKDLDFSTKLPYARDRIVDQ--------MTKLIYMTSIIDDTFDAYGIFEELKLFTEAV 52
           WWKDLDF+ KLP+ARDR+V+         +T++I MTS+IDD +D YG  EELKLFTEAV
Sbjct: 234 WWKDLDFAHKLPFARDRVVECYFWILGKILTEVIAMTSVIDDIYDVYGTLEELKLFTEAV 293

Query: 53  QRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKV 104
           +R+ I    A+D+LPEYM++ Y+ALLD Y+EIE+ +AKEGRS  L Y KE V
Sbjct: 294 ERWDI---SAIDQLPEYMRVCYRALLDVYSEIEEEMAKEGRSYRLYYAKEAV 342

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|261343328|gb|ACX70155.1| terpene synthase 1 [Citrus sinensis]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/122 (55%), Positives = 85/122 (69%), Gaps = 22/122 (18%)

Query: 1   WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF+TKLPYARDR+V+                    MT+L Y+ SIIDDT+DAYG 
Sbjct: 250 WWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGT 309

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            EEL LFTEAVQR+ I    A+D LPEYMK++Y+ LLD +NEIE+ +AK+GRS  +RY K
Sbjct: 310 LEELSLFTEAVQRWNI---EAVDMLPEYMKLIYRTLLDAFNEIEEDMAKQGRSHCVRYAK 366

Query: 102 EK 103
           E+
Sbjct: 367 EE 368

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33316389|gb|AAQ04608.1|AF441124_1 valencene synthase [Citrus sinensis]

 Score =  131 bits (329), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/122 (55%), Positives = 85/122 (69%), Gaps = 22/122 (18%)

Query: 1   WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF+TKLPYARDR+V+                    MT+L Y+ SIIDDT+DAYG 
Sbjct: 250 WWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGT 309

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            EEL LFTEAVQR+ I    A+D LPEYMK++Y+ LLD +NEIE+ +AK+GRS  +RY K
Sbjct: 310 LEELSLFTEAVQRWNI---EAVDMLPEYMKLIYRTLLDAFNEIEEDMAKQGRSHCVRYAK 366

Query: 102 EK 103
           E+
Sbjct: 367 EE 368

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19880625|gb|AAM00426.1|AF411120_1 putative terpene synthase [Citrus x paradisi]

 Score =  131 bits (329), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 68/122 (55%), Positives = 85/122 (69%), Gaps = 22/122 (18%)

Query: 1   WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF+TKLPYARDR+V+                    MT+L Y+ SIIDDT+DAYG 
Sbjct: 250 WWKDLDFTTKLPYARDRLVELYFWDLGTYFEPQYAFGRKIMTQLNYILSIIDDTYDAYGT 309

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            EEL LFTEAVQR+ I    A+D LPEYMK++Y+ LLD +NEIE+ +AK+GRS  +RY K
Sbjct: 310 LEELSLFTEAVQRWNI---EAVDMLPEYMKLIYRTLLDAFNEIEEDMAKQGRSHCVRYAK 366

Query: 102 EK 103
           E+
Sbjct: 367 EE 368

Source: Citrus x paradisi

Species: Citrus x paradisi

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|347664489|gb|AEP17005.1| (E)-beta-caryophyllene synthase [Vitis vinifera]

 Score =  124 bits (312), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 65/125 (52%), Positives = 85/125 (68%), Gaps = 22/125 (17%)

Query: 1   WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF+ KLP+ARDR+V+                    +TK+I MTSIIDD +DAYG 
Sbjct: 259 WWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFLARRILTKVIAMTSIIDDIYDAYGT 318

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            EEL+LFTEAV+R+ I    A+D+LPEYM++ Y+ALL  Y+EIE+ +A+EGRS  L Y K
Sbjct: 319 LEELELFTEAVERWDI---SAIDQLPEYMRVCYQALLYVYSEIEEEMAREGRSYRLYYAK 375

Query: 102 EKVGN 106
           E + N
Sbjct: 376 EAMKN 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143186|emb|CBI20481.3| unnamed protein product [Vitis vinifera]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/125 (51%), Positives = 84/125 (67%), Gaps = 22/125 (17%)

Query: 1   WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
           WWK+LDF+ KLP+ARDR+V+                    +TK+I MTSIIDD +D YG 
Sbjct: 71  WWKNLDFAHKLPFARDRVVECYFWILGVYFEPQFFLARRILTKVIAMTSIIDDIYDVYGT 130

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            EEL+LFTEAV+R+ I    A+D+LPEYM++ Y+ALLD Y+EIE+ +AKEGRS    Y K
Sbjct: 131 LEELELFTEAVERWDI---SAIDQLPEYMRVCYRALLDVYSEIEEEIAKEGRSYRFYYAK 187

Query: 102 EKVGN 106
           E + N
Sbjct: 188 EAMKN 192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/125 (52%), Positives = 84/125 (67%), Gaps = 22/125 (17%)

Query: 1   WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF+ KLP+ARDR+V+                    +TK+I MTSIIDD +D YG 
Sbjct: 259 WWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFFARRILTKVIAMTSIIDDIYDVYGT 318

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            EEL+LFTEAV+R+ I    A+D+LPEYM++ Y+ALL  Y+EIE+ +AKEGRS  L Y K
Sbjct: 319 LEELELFTEAVERWDI---SAIDQLPEYMRVCYQALLYVYSEIEEEMAKEGRSYRLYYAK 375

Query: 102 EKVGN 106
           E + N
Sbjct: 376 EAMKN 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/125 (52%), Positives = 84/125 (67%), Gaps = 22/125 (17%)

Query: 1   WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF+ KLP+ARDR+V+                    +TK+I MTSIIDD +D YG 
Sbjct: 259 WWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFFARRILTKVIAMTSIIDDIYDVYGT 318

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            EEL+LFTEAV+R+ I    A+D+LPEYM++ Y+ALL  Y+EIE+ +AKEGRS  L Y K
Sbjct: 319 LEELELFTEAVERWDI---SAIDQLPEYMRVCYQALLYVYSEIEEEMAKEGRSYRLYYAK 375

Query: 102 EKVGN 106
           E + N
Sbjct: 376 EAMKN 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 65/125 (52%), Positives = 84/125 (67%), Gaps = 22/125 (17%)

Query: 1   WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF+ KLP+ARDR+V+                    +TK+I MTSIIDD +D YG 
Sbjct: 259 WWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFFARRILTKVIAMTSIIDDIYDVYGT 318

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            EEL+LFTEAV+R+ I    A+D+LPEYM++ Y+ALL  Y+EIE+ +AKEGRS  L Y K
Sbjct: 319 LEELELFTEAVERWDI---SAIDQLPEYMRVCYQALLYVYSEIEEEMAKEGRSYRLYYAK 375

Query: 102 EKVGN 106
           E + N
Sbjct: 376 EAMKN 380

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
UNIPROTKB|J7LJN5	555	J7LJN5 "Beta-caryophyllene syn	0.754	0.144	0.4	1.1e-19
UNIPROTKB|Q49SP4	545	Q49SP4 "Germacrene D synthase	0.952	0.185	0.430	1.1e-19
UNIPROTKB|J7LMP2	565	J7LMP2 "Bicyclogermacrene synt	0.952	0.178	0.422	2e-19
UNIPROTKB|B5A435	559	B5A435 "Sesquiterpene synthase	0.933	0.177	0.429	2.5e-19
UNIPROTKB|Q49SP6	554	Q49SP6 "Germacrene D synthase	0.933	0.178	0.396	1.6e-16
UNIPROTKB|B3TPQ6	550	B3TPQ6 "Beta-cubebene synthase	0.952	0.183	0.382	6.9e-16
UNIPROTKB|J7LP58	564	J7LP58 "Alpha-copaene/delta-ca	0.745	0.140	0.475	1.5e-15
UNIPROTKB|Q8LSC2	558	Q8LSC2 "Germacrene A synthase	0.933	0.177	0.380	2.5e-15
TAIR|locus:2020658	611	AT1G70080 [Arabidopsis thalian	0.820	0.142	0.326	7.8e-15
UNIPROTKB|Q49SP5	554	Q49SP5 "Germacrene A synthase"	0.773	0.148	0.482	2.3e-14

UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)]

 Score = 171 (65.3 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 34/85 (40%), Positives = 59/85 (69%)

Query:    22 MTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTY 81
             ++K+I + S+IDD +D  G  +EL+LFT+A+QR+ I    AM++LP YM++ Y+ALL+ Y
Sbjct:   302 LSKVIMLASVIDDIYDVRGTLDELQLFTDAIQRWDI---SAMEQLPPYMRVCYEALLNVY 358

Query:    82 NEIEQVLAKEG--RSSYLRYDKEKV 104
              E+E++   +G  R  Y + + +K+
Sbjct:   359 AEVEELERIDGPYRVHYAKEEMKKL 383

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA

GO:1901937 "beta-caryophyllene biosynthetic process" evidence=IDA

UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)]

 Score = 242 (90.2 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 53/123 (43%), Positives = 74/123 (60%)

Query:     1 WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
             WWKDL+  TKLPY RDR+V+                    + K+  + SI DDTFDAYG 
Sbjct:   247 WWKDLEMPTKLPYIRDRLVETYFWDMGFYFEPQYALARNILVKVQCLVSIFDDTFDAYGA 306

Query:    42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
             F+EL+LF +A+ R+ I     +D+LPEYM+I+YK +LD + EIE  + K+G S  L Y +
Sbjct:   307 FKELQLFKDAIDRWSI---SCLDELPEYMQIIYKLVLDVFEEIESHMIKQGTSYRLDYAR 363

Query:   102 EKV 104
             E +
Sbjct:   364 EAI 366

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA

GO:0051762 "sesquiterpene biosynthetic process" evidence=IDA

UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)]

 Score = 240 (89.5 bits), Expect = 2.0e-19, P = 2.0e-19
 Identities = 52/123 (42%), Positives = 76/123 (61%)

Query:     1 WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
             WWK +D +  LPYARDRIV+                    + K+  + SIIDDTFDAYG 
Sbjct:   266 WWKGIDVARNLPYARDRIVETYFWILGVYFEPEYAAARKILVKVQSLFSIIDDTFDAYGT 325

Query:    42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
             FEEL++FT+A++R+ I     +D+LP+YMK++YK +L+ Y+EIE+ + K+G S    Y  
Sbjct:   326 FEELQIFTQALERWSI---SCLDQLPDYMKLIYKTVLEVYDEIEEEMIKQGTSYRTAYGI 382

Query:   102 EKV 104
             E +
Sbjct:   383 EAI 385

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA

GO:1901934 "bicyclogermacrene biosynthetic process" evidence=IDA

UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)]

 Score = 239 (89.2 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 52/121 (42%), Positives = 74/121 (61%)

Query:     1 WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
             WWK LDF+ K P+ARDR+V+                    + K+  M S IDD +DAYG 
Sbjct:   261 WWKSLDFAAKFPFARDRLVEGYFWVLGVYFEPQYSLARKIIIKVFTMISTIDDIYDAYGT 320

Query:    42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
              +EL+LFT+A+QR+ +   G++D+LPEYMK  YK++LD YNEIE+ +  +G    + Y K
Sbjct:   321 LDELELFTKAMQRWDV---GSLDQLPEYMKPCYKSILDVYNEIEEEMDNQGSLFRMHYAK 377

Query:   102 E 102
             E
Sbjct:   378 E 378

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA

UNIPROTKB|Q49SP6 Q49SP6 "Germacrene D synthase 2" [Pogostemon cablin (taxid:28511)]

 Score = 213 (80.0 bits), Expect = 1.6e-16, P = 1.6e-16
 Identities = 48/121 (39%), Positives = 72/121 (59%)

Query:     1 WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
             W++DL+  T LP+AR R+V+                    + K+  + S +DDTFDAYG 
Sbjct:   256 WYRDLEVPTMLPFARQRLVETYFWDAGVVFEPENDVARMILVKVQCLISFLDDTFDAYGS 315

Query:    42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
             FEEL+LFT+A+  + +     +D+LP+YMKI+YKALL  +  IE+++ K+G    L Y K
Sbjct:   316 FEELQLFTDAINTWDV---SCLDQLPDYMKIIYKALLGVFEVIEKLMIKQGTLYRLNYAK 372

Query:   102 E 102
             E
Sbjct:   373 E 373

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA

GO:0051762 "sesquiterpene biosynthetic process" evidence=IDA

UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)]

 Score = 207 (77.9 bits), Expect = 6.9e-16, P = 6.9e-16
 Identities = 47/123 (38%), Positives = 70/123 (56%)

Query:     1 WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
             WWK++D   KLP+ RDR+++                    MTK+I   +++DDT+D YG 
Sbjct:   252 WWKEMDLLAKLPFTRDRVLEGYFWTVGVYFEPHYSRARMIMTKMIAFATVMDDTYDVYGT 311

Query:    42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
              EEL+L T  ++R+     G MD+LP+YMK+++ ALLD  +  E  L  EG+S  + Y K
Sbjct:   312 LEELELLTATIERWNR---GDMDQLPDYMKVIFIALLDGVDATEDDLTGEGKSYRIYYLK 368

Query:   102 EKV 104
             E V
Sbjct:   369 EAV 371

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA

GO:0051762 "sesquiterpene biosynthetic process" evidence=IDA

UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)]

 Score = 204 (76.9 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 39/82 (47%), Positives = 58/82 (70%)

Query:    23 TKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYN 82
             TK+I + S++DDTFDAYG FEEL++F EAV+R+ +     +D+LPEYMK+LYK +L+  +
Sbjct:   307 TKVIAIASLLDDTFDAYGTFEELRIFAEAVERWSV---SCLDQLPEYMKLLYKTMLEVSD 363

Query:    83 EIEQVLAKEGRSSYLRYDKEKV 104
             EIE+ + K G    + Y  E +
Sbjct:   364 EIEEEMTKLGTPFRIAYGIEAI 385

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045339 "farnesyl diphosphate catabolic process" evidence=IDA

GO:1901928 "cadinene biosynthetic process" evidence=IDA

GO:1901931 "alpha-copaene biosynthetic process" evidence=IDA

UNIPROTKB|Q8LSC2 Q8LSC2 "Germacrene A synthase short form" [Cichorium intybus (taxid:13427)]

 Score = 202 (76.2 bits), Expect = 2.5e-15, P = 2.5e-15
 Identities = 46/121 (38%), Positives = 67/121 (55%)

Query:     1 WWKDLDFSTKLPYARDRIVDQM-------------------TKLIYMTSIIDDTFDAYGI 41
             WWKD+ F    PY RDR+ +                     TK+     ++DDT+DAY  
Sbjct:   260 WWKDMRFQETTPYIRDRVPEIYLWILGLYFEPRYSLARIIATKITLFLVVLDDTYDAYAT 319

Query:    42 FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
              EE++L T+A+ R+ I    AM+++PEY++  YK LLD Y E+E+ LAKEGR+  +   K
Sbjct:   320 IEEIRLLTDAINRWDI---SAMEQIPEYIRPFYKILLDEYAELEKQLAKEGRAKSVIASK 376

Query:   102 E 102
             E
Sbjct:   377 E 377

GO:0034005 "germacrene-A synthase activity" evidence=IDA

GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA

TAIR|locus:2020658 AT1G70080 [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
 Identities = 30/92 (32%), Positives = 58/92 (63%)

Query:    13 YARDRIVDQMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKI 72
             Y+  RI+  + K I +  I+D+TFD YG  +E+K   +A++R+      A+D LP+Y+K+
Sbjct:   345 YSAARIM--LAKSIILVDIVDNTFDVYGTIDEVKSLVQAIERWDS---DAVDVLPDYLKV 399

Query:    73 LYKALLDTYNEIEQVLAKEGRSSYLRYDKEKV 104
             +++   D + E+E+ ++ E RS  ++Y  E++
Sbjct:   400 VFRTTFDLFKELEEYVSSEARSFTMQYAYEQL 431

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0010333 "terpene synthase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)]

 Score = 193 (73.0 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 42/87 (48%), Positives = 60/87 (68%)

Query:    13 YARDRIVDQMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKI 72
             Y+R RI+  +TK I MT+I+DDT+D+YG  EEL + T+A++R+ I  I     LPEY+K 
Sbjct:   288 YSRARIM--LTKTIAMTAILDDTYDSYGTLEELDVLTKAIERWDIKEING---LPEYIKG 342

Query:    73 LYKALLDTYNEIEQVLAKEGRSSYLRY 99
              YK +L  Y ++E+ LAKEGRS  + Y
Sbjct:   343 FYKQVLKLYQQLEEELAKEGRSYAVYY 369

GO:0010334 "sesquiterpene synthase activity" evidence=IDA

GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA

GO:0051762 "sesquiterpene biosynthetic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	106
cd00684	542	cd00684, Terpene_cyclase_plant_C1, Plant Terpene C	6e-36
cd00868	284	cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla	4e-29
pfam03936	270	pfam03936, Terpene_synth_C, Terpene synthase famil	5e-29
cd00385	243	cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth	4e-05
PLN02279	784	PLN02279, PLN02279, ent-kaur-16-ene synthase	8e-04

>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1

 Score =  127 bits (321), Expect = 6e-36
 Identities = 60/121 (49%), Positives = 80/121 (66%), Gaps = 22/121 (18%)

Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWKDLD ++KLP+ARDR+V+                    + K I + ++IDDT+D YG 
Sbjct: 246 WWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGT 305

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            EEL+LFTEAV+R+ I    A+D+LPEYMKI++KALL+T NEIE+ L KEG S  + Y K
Sbjct: 306 LEELELFTEAVERWDI---SAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLK 362

Query: 102 E 102
           E
Sbjct: 363 E 363

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542

>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1

 Score =  105 bits (264), Expect = 4e-29
 Identities = 58/121 (47%), Positives = 75/121 (61%), Gaps = 22/121 (18%)

Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWK+L    KLP+ARDR+V+                    + K I + ++IDDT+D YG 
Sbjct: 12  WWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGT 71

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            EEL+LFTEAV+R+ I    A+D+LPEYMK ++KAL D  NEIE+ LAKEG S  L Y K
Sbjct: 72  LEELELFTEAVERWDI---SAIDELPEYMKPVFKALYDLVNEIEEELAKEGGSESLPYLK 128

Query: 102 E 102
           E
Sbjct: 129 E 129

Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational changes that close the active site to solvent, stabilizing reactive carbocation intermediates. Mechanistically and structurally distinct, class II terpene cyclases and cis-IPPS are not included in this CD. Taxonomic distribution includes bacteria, fungi and plants. Length = 284

>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain

 Score =  104 bits (262), Expect = 5e-29
 Identities = 55/122 (45%), Positives = 79/122 (64%), Gaps = 23/122 (18%)

Query: 1   WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
           WWK+L  ++KLP+ARDR+V+                      K   + ++IDDT+D YG 
Sbjct: 26  WWKELGLASKLPFARDRLVECYFWAAASYFEPQYSDARIAAAKTAALLTVIDDTYDRYGT 85

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKE-GRSSYLRYD 100
            EEL+LFT+AV+R   + I A+D+LP+YMKI++KALLDT+ EIE+ L+K+ GRS  + Y 
Sbjct: 86  LEELELFTDAVER---WDISAIDELPDYMKIVFKALLDTFEEIEEELSKDQGRSYIVPYL 142

Query: 101 KE 102
           KE
Sbjct: 143 KE 144

It has been suggested that this gene family be designated tps (for terpene synthase). It has been split into six subgroups on the basis of phylogeny, called tpsa-tpsf. tpsa includes vetispiridiene synthase, 5-epi- aristolochene synthase, and (+)-delta-cadinene synthase. tpsb includes (-)-limonene synthase. tpsc includes kaurene synthase A. tpsd includes taxadiene synthase, pinene synthase, and myrcene synthase. tpse includes kaurene synthase B. tpsf includes linalool synthase. Length = 270

>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 13/81 (16%)

Query: 22  MTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTY 81
           + KL   + + DD  D  G    L     AV         A+D LPE +      L D +
Sbjct: 19  VEKLHAASLVHDDIVDDSGTRRGLPTAHLAV---------AIDGLPEAILAGDLLLADAF 69

Query: 82  NEIEQVLAKEGRSSYLRYDKE 102
            E    LA+EG    L    E
Sbjct: 70  EE----LAREGSPEALEILAE 86

Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoterpenes, diterpenes, and sesquiterpenes, are formed from their respective linear isoprenoid diphosphates by class I terpene cyclases. The head-to-head (HH) IPPS catalyze the successive 1'-1 condensation of 2 farnesyl or 2 geranylgeranyl isoprenoid diphosphates. Cyclization of these 30- and 40-carbon linear forms are catalyzed by class II cyclases. Both the isoprenoid chain elongation reactions and the class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational changes that close the active site to solvent, stabilizing reactive carbocation intermediates. Generally, the enzymes in this family exhibit an all-trans reaction pathway, an exception, is the cis-trans terpene cyclase, trichodiene synthase. Mechanistically and structurally distinct, class II terpene cyclases and cis-IPPS are not included in this CD. Length = 243

>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase

 Score = 36.8 bits (85), Expect = 8e-04
 Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 3/68 (4%)

Query: 28  MTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEI-EQ 86
           +T+++DD FD  G  EEL+   + V+++ +   G+ D   E ++I++ AL  T +EI ++
Sbjct: 525 LTTVVDDFFDVGGSEEELENLIQLVEKWDV--NGSPDFCSEQVEIIFSALRSTISEIGDK 582

Query: 87  VLAKEGRS 94
               +GR+
Sbjct: 583 AFTWQGRN 590

Length = 784

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
PLN02279	784	ent-kaur-16-ene synthase	100.0
PLN02592	800	ent-copalyl diphosphate synthase	99.97
cd00684	542	Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C	99.96
cd00868	284	Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp	99.54
PF03936	270	Terpene_synth_C: Terpene synthase family, metal bi	99.3
cd00687	303	Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl	97.23
cd00385	243	Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym	90.9

>PLN02279 ent-kaur-16-ene synthase

Probab=100.00  E-value=4.6e-33  Score=237.99  Aligned_cols=102  Identities=24%  Similarity=0.290  Sum_probs=96.5

Q ss_pred             CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhcccc
Q 036967            1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIG   61 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~   61 (106)
                      |||++|| .+|||||||+||                   ++||+++|+|++||+||+|||+|||++||+||||||   ++
T Consensus       480 Wwke~~L-~~L~faRdr~ve~Yf~aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD---~~  555 (784)
T PLN02279        480 WIVENRL-DKLKFARQKLAYCYFSAAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWD---VN  555 (784)
T ss_pred             eHHhcCC-ccCCchhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhc---cc
Confidence            9999999 699999999999                   999999999999999999999999999999999999   88


Q ss_pred             -ccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhhC
Q 036967           62 -AMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN  106 (106)
Q Consensus        62 -~~~~lp~~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~~  106 (106)
                       .+++||+|||+||.+|++++|||+.++.+.+|+++++|++++|++
T Consensus       556 ~~~~~lpeymki~f~aL~~t~nei~~~~~~~qGr~v~~~l~~aW~~  601 (784)
T PLN02279        556 GSPDFCSEQVEIIFSALRSTISEIGDKAFTWQGRNVTSHIIKIWLD  601 (784)
T ss_pred             cchhhCcHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence             679999999999999999999999996656667999999999973

>PLN02592 ent-copalyl diphosphate synthase

Probab=99.97  E-value=7e-31  Score=224.70  Aligned_cols=102  Identities=13%  Similarity=0.123  Sum_probs=98.1

Q ss_pred             CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHh--------
Q 036967            1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQ--------   53 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~ave--------   53 (106)
                      |||++|| .+|||||||+||                   ++||+++|+|++||+||+|||+|||++||++|+        
T Consensus       528 Wwke~~L-~~L~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~LitviDD~fD~yGt~eEl~~ft~~v~~~~~~~~~  606 (800)
T PLN02592        528 WYEECNL-GEFGVSRSELLLAYFLAAASIFEPERSHERLAWAKTTVLVEAISSYFNKETSSKQRRAFLHEFGYGYKINGR  606 (800)
T ss_pred             HHHhcCC-CcCCcchhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHHHHhccccccc
Confidence            9999999 599999999999                   999999999999999999999999999999997        


Q ss_pred             hhhhccccccccCCH------HHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhhC
Q 036967           54 RFKIFYIGAMDKLPE------YMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN  106 (106)
Q Consensus        54 RWd~~~~~~~~~lp~------~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~~  106 (106)
                      |||   .+++++||+      |||+||.+|++|+|||+.++.+.+|+++++|++++|.+
T Consensus       607 rWd---~~~~~~lp~~~~~~~~mki~f~aLy~tineia~~a~~~qGr~v~~~L~~~W~~  662 (800)
T PLN02592        607 RSD---HHFNDRNMRRSGSVKTGEELVGLLLGTLNQLSLDALEAHGRDISHLLRHAWEM  662 (800)
T ss_pred             ccC---chhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            999   999999988      99999999999999999998888899999999999963

>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1

Probab=99.96  E-value=1.8e-29  Score=208.45  Aligned_cols=103  Identities=58%  Similarity=0.999  Sum_probs=100.3

Q ss_pred             CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhcccc
Q 036967            1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIG   61 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~   61 (106)
                      ||+++||.++|||+|+|++|                   ++||.+++++++||+||+|||+|||+.||+||+|||   ++
T Consensus       246 Wwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd---~~  322 (542)
T cd00684         246 WWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERWD---IS  322 (542)
T ss_pred             HHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhcc---cc
Confidence            99999999999999999999                   999999999999999999999999999999999999   99


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhhC
Q 036967           62 AMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN  106 (106)
Q Consensus        62 ~~~~lp~~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~~  106 (106)
                      ++++||+|||+||.+|+++++++++++.++||++.+.++++.|++
T Consensus       323 ~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~  367 (542)
T cd00684         323 AIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKD  367 (542)
T ss_pred             chhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999963

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi

>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1

Probab=99.54  E-value=4.2e-14  Score=105.94  Aligned_cols=102  Identities=57%  Similarity=0.952  Sum_probs=92.5

Q ss_pred             CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhcccc
Q 036967            1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIG   61 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~   61 (106)
                      ||+++|+....+++|.+..+                   ++||.+.++.++||.||.+|+.+|+..++++++||+   .+
T Consensus        12 W~~~~~l~~~~~~~r~~~~~~~~~~a~~~p~~~~~~~l~~~a~~~~~~f~~DD~~D~~~~~~~~~~~~~~~~~~~---~~   88 (284)
T cd00868          12 WWKELGLQEKLPFARDRLVECYFWAAGSYFEPQYSEARIALAKTIALLTVIDDTYDDYGTLEELELFTEAVERWD---IS   88 (284)
T ss_pred             HHHHhCCcccCCchhhHhHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHhcC---hh
Confidence            88999997666688888777                   999999999999999999999999999999999999   99


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhh
Q 036967           62 AMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVG  105 (106)
Q Consensus        62 ~~~~lp~~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~  105 (106)
                      ..+.+|++++.++.+++++.+++.+.+.+++|......+++.|.
T Consensus        89 ~~~~~p~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~r~~~~~~  132 (284)
T cd00868          89 AIDELPEYMKPVFKALYDLVNEIEEELAKEGGSESLPYLKEAWK  132 (284)
T ss_pred             hhhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence            99999999999999999999999999888777777777777764

Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch

>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family

Probab=99.30  E-value=1.9e-12  Score=96.31  Aligned_cols=102  Identities=28%  Similarity=0.399  Sum_probs=88.0

Q ss_pred             CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhcccc
Q 036967            1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIG   61 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~   61 (106)
                      ||+++|+..+.+.+|+|++.                   ++||.+..+.++||.||..|+.++++.|+++++||+   +.
T Consensus        26 W~~~~~l~~~~~~~~~~~~~~~~~~~aa~~~P~~~~~l~~~a~~~~w~f~~DD~~D~~~~~~~~~~l~~~~~~~~---~~  102 (270)
T PF03936_consen   26 WVKEFGLFDEDKAARQRFRQAYFGLLAARFYPDSSDELLAAADWMAWLFIFDDFFDDGGSAEELEALTDAVERWD---PN  102 (270)
T ss_dssp             HHHHCTHHHHHTTSHHHHHHHHHHHHHHHHSGCGHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTS---SG
T ss_pred             HHHHcCCccccccchhhhhHhHHhhhhheeCCCcHHHHHHHHhhchheeeeeeccccccchHHHHHHHHHHhccc---cc
Confidence            88889986677778888888                   899999999999999999999999999999999999   88


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHhCC-ccHHHHHHHHhh
Q 036967           62 AMDKLPEYMKILYKALLDTYNEIEQVLAKEGR-SSYLRYDKEKVG  105 (106)
Q Consensus        62 ~~~~lp~~mki~f~~l~~t~~ei~~~~~~~~~-~~~~~~~~~~~~  105 (106)
                      ....+|++++.++.++.++++++...+.+.++ +...+++++.|.
T Consensus       103 ~~~~~~~~~~~~~~~l~d~~~r~~~~~~~~~~~~~~~~~~~~~~~  147 (270)
T PF03936_consen  103 SGDPLPDPDKPLFRALADIWNRIAARMSPAQRRRDQIKRFRNSWR  147 (270)
T ss_dssp             GGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHhhhhhcccHHhhHHHHHHH
Confidence            88899999999999999999999888776633 335555666553

It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....

>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1

Probab=97.23  E-value=0.00066  Score=51.77  Aligned_cols=65  Identities=15%  Similarity=0.040  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHhhccccccc-CCHHHHHHHHHHHhhhhhccccccccCCHHHHHHHHHHHHHHHHHHHHH
Q 036967           21 QMTKLIYMTSIIDDTFDAY-GIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVL   88 (106)
Q Consensus        21 ~~tK~~~l~tilDD~yD~y-gt~eEl~~ft~aveRWd~~~~~~~~~lp~~mki~f~~l~~t~~ei~~~~   88 (106)
                      +.++.+..+.++||.||.. ++.+++..+++.+.++.   ......-|.....+..++.+....+....
T Consensus        61 l~~~~~~w~f~~DD~~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~~~~~d~~~r~~~~~  126 (303)
T cd00687          61 LAADLMAWLFVFDDLLDRDQKSPEDGEAGVTRLLDIL---RGDGLDSPDDATPLEFGLADLWRRTLARM  126 (303)
T ss_pred             HHHHHHHHHHHhcccCCccccCHHHHHHHHHHHHhcc---CCCCCCCCCCCCHHHHHHHHHHHHhccCC
Confidence            7899999999999999998 49999999998888865   43211114667777777777777775553

This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in

>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1

Probab=90.90  E-value=0.54  Score=32.83  Aligned_cols=57  Identities=28%  Similarity=0.294  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhccccccccCCHHHHHHHHHHHHHHHHHHH
Q 036967           21 QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQ   86 (106)
Q Consensus        21 ~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~~~~~lp~~mki~f~~l~~t~~ei~~   86 (106)
                      .++++.....++||++|..++..+.......++         ....|..+...+..+...++++.+
T Consensus        18 ~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~   74 (243)
T cd00385          18 AVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVA---------IDGLPEAILAGDLLLADAFEELAR   74 (243)
T ss_pred             HHHHHHHHHHHHhhcccCCCCCCCchhhhhhHH---------hcCchHHHHHHHHHHHHHHHHHHh
Confidence            789999999999999999988777655444321         123455555555555555555543

Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	106
5eau_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		1e-23
1hx9_A	548	Crystal Structure Of Teas W273s Form 1 Length = 548		1e-23
3m01_A	550	The Crystal Structure Of 5-Epi-Aristolochene Syntha		1e-23
1hxg_A	548	Crystal Structure Of Teas W273sC440W Length = 548		1e-23
5eas_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		1e-23
4di5_A	535	Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt		1e-23
3lz9_A	550	The Crystal Structure Of 5-Epi-Aristolochene Syntha		1e-23
5eat_A	548	5-Epi-Aristolochene Synthase From Nicotiana Tabacum		1e-23
1hxc_A	548	Crystal Structure Of Teas C440w Length = 548		1e-23
3g4d_A	554	Crystal Structure Of (+)-Delta-Cadinene Synthase Fr		2e-23
3n0f_A	555	Crystal Structure Of Isoprene Synthase From Grey Po		3e-14
2j5c_A	569	Rational Conversion Of Substrate And Product Specif		1e-13
2ong_A	543	Crystal Structure Of Of Limonene Synthase With 2- F		6e-12
3s9v_A	785	Abietadiene Synthase From Abies Grandis Length = 78		3e-10
3sae_A	817	Structure Of A Three-Domain Sesquiterpene Synthase:		3e-09
1n1b_A	549	Crystal Structure Of (+)-bornyl Diphosphate Synthas		3e-09

>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548

Iteration: 1
 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 22/123 (17%)
Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF T LPYARDR+V+                    + K I M SI+DDTFDAYG 
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            +EL+ +T+A+QR+ I     +D+LP+YMKI YKA+LD Y + E+ L+  GRS  + +  
Sbjct: 310 VKELEAYTDAIQRWDI---NEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAI 366
Query: 102 EKV 104
           E++
Sbjct: 367 ERM 369

>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548

Iteration: 1
 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 22/123 (17%)
Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF T LPYARDR+V+                    + K I M SI+DDTFDAYG 
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            +EL+ +T+A+QR+ I     +D+LP+YMKI YKA+LD Y + E+ L+  GRS  + +  
Sbjct: 310 VKELEAYTDAIQRWDI---NEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAI 366
Query: 102 EKV 104
           E++
Sbjct: 367 ERM 369

>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550

Iteration: 1
 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 22/123 (17%)
Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF T LPYARDR+V+                    + K I M SI+DDTFDAYG 
Sbjct: 252 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 311
Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            +EL+ +T+A+QR+ I     +D+LP+YMKI YKA+LD Y + E+ L+  GRS  + +  
Sbjct: 312 VKELEAYTDAIQRWDI---NEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAI 368
Query: 102 EKV 104
           E++
Sbjct: 369 ERM 371

>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548

Iteration: 1
 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 22/123 (17%)
Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF T LPYARDR+V+                    + K I M SI+DDTFDAYG 
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFSALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            +EL+ +T+A+QR+ I     +D+LP+YMKI YKA+LD Y + E+ L+  GRS  + +  
Sbjct: 310 VKELEAYTDAIQRWDI---NEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAI 366
Query: 102 EKV 104
           E++
Sbjct: 367 ERM 369

>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548

Iteration: 1
 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 22/123 (17%)
Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF T LPYARDR+V+                    + K I M SI+DDTFDAYG 
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            +EL+ +T+A+QR+ I     +D+LP+YMKI YKA+LD Y + E+ L+  GRS  + +  
Sbjct: 310 VKELEAYTDAIQRWDI---NEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAI 366
Query: 102 EKV 104
           E++
Sbjct: 367 ERM 369

>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535

Iteration: 1
 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 22/123 (17%)
Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF T LPYARDR+V+                    + K I M SI+DDTFDAYG 
Sbjct: 237 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 296
Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            +EL+ +T+A+QR+ I     +D+LP+YMKI YKA+LD Y + E+ L+  GRS  + +  
Sbjct: 297 VKELEAYTDAIQRWDI---NEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAI 353
Query: 102 EKV 104
           E++
Sbjct: 354 ERM 356

>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550

Iteration: 1
 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 22/123 (17%)
Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF T LPYARDR+V+                    + K I M SI+DDTFDAYG 
Sbjct: 252 WWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 311
Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            +EL+ +T+A+QR+ I     +D+LP+YMKI YKA+LD Y + E+ L+  GRS  + +  
Sbjct: 312 VKELEAYTDAIQRWDI---NEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAI 368
Query: 102 EKV 104
           E++
Sbjct: 369 ERM 371

>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548

Iteration: 1
 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 22/123 (17%)
Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF T LPYARDR+V+                    + K I M SI+DDTFDAYG 
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            +EL+ +T+A+QR+ I     +D+LP+YMKI YKA+LD Y + E+ L+  GRS  + +  
Sbjct: 310 VKELEAYTDAIQRWDI---NEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAI 366
Query: 102 EKV 104
           E++
Sbjct: 367 ERM 369

>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548

Iteration: 1
 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 22/123 (17%)
Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF T LPYARDR+V+                    + K I M SI+DDTFDAYG 
Sbjct: 250 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 309
Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            +EL+ +T+A+QR+ I     +D+LP+YMKI YKA+LD Y + E+ L+  GRS  + +  
Sbjct: 310 VKELEAYTDAIQRWDI---NEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAI 366
Query: 102 EKV 104
           E++
Sbjct: 367 ERM 369

>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 74/120 (61%), Gaps = 22/120 (18%)
Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF  KLPYARDR+V+                    +TK+I M SI+DDT+D+Y  
Sbjct: 256 WWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYAT 315
Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
           +EEL  +T A++R+ I     +D++PEYMK  YKALLD Y E+ Q++A+ GR   + Y K
Sbjct: 316 YEELIPYTNAIERWDI---KCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAK 372

>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 60/103 (58%), Gaps = 22/103 (21%)
Query: 1   WWKDLDFSTKLPYARDRIV-------------------DQMTKLIYMTSIIDDTFDAYGI 41
           WW+ +  +TKL +ARDR++                   + + K+    +IIDD +D YG 
Sbjct: 254 WWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGT 313
Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEI 84
            +EL+LFT+AV+R+    + A++ LP+YMK+ + AL +T NEI
Sbjct: 314 LDELELFTDAVERWD---VNAINDLPDYMKLCFLALYNTINEI 353

>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/103 (37%), Positives = 54/103 (52%), Gaps = 22/103 (21%)
Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WW       +LP+ RDRIV+                    +TK+  + + IDD FD YG 
Sbjct: 272 WWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGT 331
Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEI 84
            EEL+LFT A+QR+    I +M +LP YM+I Y AL +  NE+
Sbjct: 332 LEELQLFTTAIQRWD---IESMKQLPPYMQICYLALFNFVNEM 371

>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 22/96 (22%)
Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WW++  F  KLP+ARDR+V+                    M K+  + ++IDD +D YG 
Sbjct: 245 WWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGT 304
Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKAL 77
            EEL+ FT+ ++R+    I ++D+LP+YM++ + AL
Sbjct: 305 LEELEQFTDLIRRWD---INSIDQLPDYMQLCFLAL 337

>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 27/117 (23%)
Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWK   F T L + R+R+ +                     TK    T I+DD +DA+G 
Sbjct: 488 WWKSSGF-TDLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGS 546
Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLR 98
            ++LKLFTE+V+R+ +  +   D++P+ MKI +    +T+N+I    AKEGR    R
Sbjct: 547 LDDLKLFTESVKRWDLSLV---DQMPQQMKICFVGFYNTFNDI----AKEGRERQGR 596

>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 6/82 (7%)
Query: 13  YARDRIVDQMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKI 72
           YA+ R +   TK+  + +++DD +D YG  +ELKLFTEAV+R+ + +    + LP+YMK+
Sbjct: 548 YAKCRFL--FTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSF---TENLPDYMKL 602
Query: 73  LYKALLDTYNEIEQVLAKE-GR 93
            Y+   D  +E+     KE GR
Sbjct: 603 CYQIYYDIVHEVAWEAEKEQGR 624

>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 22/123 (17%)
Query: 1   WWKDLDFSTKLPYARDRIVDQM-------------------TKLIYMTSIIDDTFDAYGI 41
           WW  L F  KLP+ RDR+V+                       +I + ++IDD +D YG 
Sbjct: 251 WWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGT 310
Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            +EL+LFT+  +R+      ++ +LP YM++ Y  + +  ++    + KE     L+Y +
Sbjct: 311 LDELELFTDTFKRWD---TESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLR 367
Query: 102 EKV 104
           + V
Sbjct: 368 KSV 370

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	106
2j5c_A	569	1,8-cineole synthase; terpene synthases, 1, monote	1e-21
3m00_A	550	Aristolochene synthase; plant terpenoid cyclase, l	5e-20
3g4d_A	554	(+)-delta-cadinene synthase isozyme XC1; cyclase,	4e-19
3n0f_A	555	Isoprene synthase; terpene cyclase fold, hemiterpe	4e-19
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	6e-19
1n1b_A	549	(+)-bornyl diphosphate synthase; terpene synthase	9e-17
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	4e-16
2ong_A	543	4S-limonene synthase; monoterpene synthase, monote	6e-16
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	1e-15
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	3e-11
3kb9_A	382	EPI-isozizaene synthase; terpenoid cyclase, alpha-	2e-04
1ps1_A	337	Pentalenene synthase; antibiotic biosynthesis, ses	7e-04

>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569

 Score = 87.2 bits (215), Expect = 1e-21
 Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 22/121 (18%)

Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WW       +LP+ RDRIV+                    +TK+  + + IDD FD YG 
Sbjct: 272 WWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGT 331

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            EEL+LFT A+QR+ I     M +LP YM+I Y AL +  NE+     ++       Y +
Sbjct: 332 LEELQLFTTAIQRWDIES---MKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLR 388

Query: 102 E 102
           +
Sbjct: 389 K 389

>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550

 Score = 82.5 bits (203), Expect = 5e-20
 Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 22/123 (17%)

Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF T LPYARDR+V+                    + K I M SI+DDTFDAYG 
Sbjct: 252 WWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 311

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            +EL+ +T+A+QR+ I     +D+LP+YMKI YKA+LD Y + E+ L+  GRS  + +  
Sbjct: 312 VKELEAYTDAIQRWDI---NEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAI 368

Query: 102 EKV 104
           E++
Sbjct: 369 ERM 371

>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554

 Score = 79.8 bits (196), Expect = 4e-19
 Identities = 54/121 (44%), Positives = 74/121 (61%), Gaps = 22/121 (18%)

Query: 1   WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF  KLPYARDR+V+                    +TK+I M SI+DDT+D+Y  
Sbjct: 256 WWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYAT 315

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
           +EEL  +T A++R+ I     +D++PEYMK  YKALLD Y E+ Q++A+ GR   + Y K
Sbjct: 316 YEELIPYTNAIERWDIK---CIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAK 372

Query: 102 E 102
            
Sbjct: 373 N 373

>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555

 Score = 79.8 bits (196), Expect = 4e-19
 Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 22/118 (18%)

Query: 1   WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
           WW+ +  +TKL +ARDR+++                    + K+    +IIDD +D YG 
Sbjct: 254 WWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGT 313

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRY 99
            +EL+LFT+AV+R+ +     ++ LP+YMK+ + AL +T NEI     K+   + L Y
Sbjct: 314 LDELELFTDAVERWDVNA---INDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPY 368

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764

 Score = 79.5 bits (195), Expect = 6e-19
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 21/114 (18%)

Query: 1   WWKDLDFSTKLPYARDRIVD-----------------QMTKLIYMTSIIDDTFDAYGIFE 43
           WWK+   +  + + R R+ +                   TK+  +  + DD  D +   +
Sbjct: 459 WWKESGMA-DINFTRHRVAEVYFSSATFEPEYSATRIAFTKIGCLQVLFDDMADIFATLD 517

Query: 44  ELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYL 97
           ELK FTE V+R+       + ++PE M+  +K       E+   + K      L
Sbjct: 518 ELKSFTEGVKRW---DTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDML 568

>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549

 Score = 72.9 bits (178), Expect = 9e-17
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 22/121 (18%)

Query: 1   WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
           WW  L F  KLP+ RDR+V+                       +I + ++IDD +D YG 
Sbjct: 251 WWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGT 310

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            +EL+LFT+  +R+      ++ +LP YM++ Y  + +  ++    + KE     L+Y +
Sbjct: 311 LDELELFTDTFKRW---DTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLR 367

Query: 102 E 102
           +
Sbjct: 368 K 368

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785

 Score = 71.4 bits (174), Expect = 4e-16
 Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 23/123 (18%)

Query: 1   WWKDLDFSTKLPYARDRIVDQ-------------------MTKLIYMTSIIDDTFDAYGI 41
           WWK   F T L + R+R+ +                     TK    T I+DD +DA+G 
Sbjct: 488 WWKSSGF-TDLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGS 546

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            ++LKLFTE+V+R+    +  +D++P+ MKI +    +T+N+I +   +      L Y +
Sbjct: 547 LDDLKLFTESVKRW---DLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQ 603

Query: 102 EKV 104
              
Sbjct: 604 NVW 606

>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543

 Score = 70.6 bits (172), Expect = 6e-16
 Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 22/121 (18%)

Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WW++  F  KLP+ARDR+V+                    M K+  + ++IDD +D YG 
Sbjct: 245 WWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGT 304

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            EEL+ FT+ ++R+    I ++D+LP+YM++ + AL +  ++    + KE   + + Y +
Sbjct: 305 LEELEQFTDLIRRW---DINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLR 361

Query: 102 E 102
           +
Sbjct: 362 Q 362

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817

 Score = 70.3 bits (171), Expect = 1e-15
 Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 23/118 (19%)

Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           W++D        +AR+R ++                     TK+  + +++DD +D YG 
Sbjct: 516 WFRDSGLP-LFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGT 574

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRY 99
            +ELKLFTEAV+R+    +   + LP+YMK+ Y+   D  +E+     KE     + +
Sbjct: 575 LDELKLFTEAVRRW---DLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSF 629

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727

 Score = 57.2 bits (137), Expect = 3e-11
 Identities = 13/130 (10%), Positives = 32/130 (24%), Gaps = 29/130 (22%)

Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYG- 40
           W+++   S +    R  +++                      K   +   I  +F     
Sbjct: 463 WYEENRLS-EWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESSD 521

Query: 41  ----IFEELKLFTEAVQRFKIFYI--GAMDKLPEYMK--ILYKALLDTYNEIEQVLAKEG 92
                 ++   +    +R    +         P  ++   L   L+ T N++   L    
Sbjct: 522 SRRSFSDQFHEYIANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSH 581

Query: 93  RSSYLRYDKE 102
                     
Sbjct: 582 GRDVNNLLYL 591

>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 8/82 (9%), Positives = 21/82 (25%), Gaps = 1/82 (1%)

Query: 12  PYARDRIVDQMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMK 71
             A D ++  +        + DD  D   +      +   ++      + +      +  
Sbjct: 99  LGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAW-RRLRGLLHTALDSPGDHLHHED 157

Query: 72  ILYKALLDTYNEIEQVLAKEGR 93
            L     D+   +   L     
Sbjct: 158 TLVAGFADSVRRLYAFLPATWN 179

>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337

 Score = 36.3 bits (83), Expect = 7e-04
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 6/83 (7%)

Query: 12  PYARDRIVDQMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDK-LPEYM 70
           P+A    +D    L+    + DD FD            E  ++       A+D  LP+  
Sbjct: 59  PHATGADLDLGVDLMSWFFLFDDLFDGPRGENP-----EDTKQLTDQVAAALDGPLPDTA 113

Query: 71  KILYKALLDTYNEIEQVLAKEGR 93
             +     D +    + +     
Sbjct: 114 PPIAHGFADIWRRTCEGMTPAWC 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
3m00_A	550	Aristolochene synthase; plant terpenoid cyclase, l	100.0
3g4d_A	554	(+)-delta-cadinene synthase isozyme XC1; cyclase,	100.0
3n0f_A	555	Isoprene synthase; terpene cyclase fold, hemiterpe	100.0
3s9v_A	785	Abietadiene synthase, chloroplastic; alpha bundle/	100.0
3sdr_A	817	Alpha-bisabolene synthase; lyase, terpene synthase	100.0
3p5p_A	764	Taxadiene synthase; class I and II terpene cyclase	100.0
2j5c_A	569	1,8-cineole synthase; terpene synthases, 1, monote	99.97
2ong_A	543	4S-limonene synthase; monoterpene synthase, monote	99.97
1n1b_A	549	(+)-bornyl diphosphate synthase; terpene synthase	99.97
3pya_A	727	ENT-copalyl diphosphate synthase, chloroplastic; c	99.96
1ps1_A	337	Pentalenene synthase; antibiotic biosynthesis, ses	99.72
1di1_A	300	Aristolochene synthase; sesquiterpene cyclase, iso	99.71
3bny_A	320	Aristolochene synthase; sesquiterpene cyclase, iso	99.69
3kb9_A	382	EPI-isozizaene synthase; terpenoid cyclase, alpha-	99.09
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	80.19

>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*

Probab=100.00  E-value=3.9e-38  Score=259.94  Aligned_cols=103  Identities=53%  Similarity=0.961  Sum_probs=100.4

Q ss_pred             CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhcccc
Q 036967            1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIG   61 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~   61 (106)
                      |||++||+++|||||||+||                   ++||+++++|++||+||+|||+|||++||+||+|||   ++
T Consensus       252 Wwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD---~~  328 (550)
T 3m00_A          252 WWKDLDFVTTLPYARDRVVECYFWTLGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWD---IN  328 (550)
T ss_dssp             HHHTTTHHHHSTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCC---GG
T ss_pred             HHHHcCCccccCcHHHhHHHHHHHHHHhhCCccchHHHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhcC---cc
Confidence            99999998899999999999                   999999999999999999999999999999999999   99


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhhC
Q 036967           62 AMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN  106 (106)
Q Consensus        62 ~~~~lp~~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~~  106 (106)
                      ++++||+|||+||.+|+++++||++++.++||+++++|++++|++
T Consensus       329 ~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~  373 (550)
T 3m00_A          329 EIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKE  373 (550)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHH
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999973

>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*

Probab=100.00  E-value=5.1e-38  Score=259.41  Aligned_cols=103  Identities=52%  Similarity=0.960  Sum_probs=100.4

Q ss_pred             CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhcccc
Q 036967            1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIG   61 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~   61 (106)
                      |||++||+++|||||||+||                   ++||+++++|++||+||+|||+|||++||+||+|||   ++
T Consensus       256 Wwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD---~~  332 (554)
T 3g4d_A          256 WWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWD---IK  332 (554)
T ss_dssp             HHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCC---GG
T ss_pred             HHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcC---cc
Confidence            99999998999999999999                   999999999999999999999999999999999999   99


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhhC
Q 036967           62 AMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN  106 (106)
Q Consensus        62 ~~~~lp~~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~~  106 (106)
                      ++++||+|||+||.+|+++++||++++.++||+++++|++++|++
T Consensus       333 ~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~  377 (554)
T 3g4d_A          333 CIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIR  377 (554)
T ss_dssp             GGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHH
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999973

>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*

Probab=100.00  E-value=3.7e-37  Score=254.30  Aligned_cols=103  Identities=39%  Similarity=0.782  Sum_probs=100.1

Q ss_pred             CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhcccc
Q 036967            1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIG   61 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~   61 (106)
                      |||++||+++|||||||+||                   ++||+++++|++||+||+|||+|||++||+||+|||   ++
T Consensus       254 Wwk~~~l~~~l~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD---~~  330 (555)
T 3n0f_A          254 WWRRVGLATKLHFARDRLIESFYWAVGVAFEPQYSDCRNSVAKMFSFVTIIDDIYDVYGTLDELELFTDAVERWD---VN  330 (555)
T ss_dssp             HHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTC---GG
T ss_pred             HHHHcCCcccCCchhhHHHHHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHhcC---cc
Confidence            99999998899999999999                   999999999999999999999999999999999999   99


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhhC
Q 036967           62 AMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN  106 (106)
Q Consensus        62 ~~~~lp~~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~~  106 (106)
                      ++++||+|||+||.+|+++++||++++.++||+++++|++++|++
T Consensus       331 ~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~~  375 (555)
T 3n0f_A          331 AINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWAD  375 (555)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence            999999999999999999999999998888899999999999973

>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}

Probab=100.00  E-value=6e-35  Score=248.54  Aligned_cols=102  Identities=34%  Similarity=0.645  Sum_probs=97.6

Q ss_pred             CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhcccc
Q 036967            1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIG   61 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~   61 (106)
                      |||++|+ .+|||||||+||                   ++||+++|+|++||+||+|||+|||++||+||+|||   ++
T Consensus       488 Wwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD---~~  563 (785)
T 3s9v_A          488 WWKSSGF-TDLNFTRERVTEIYFSPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWD---LS  563 (785)
T ss_dssp             HHHHTTT-TSCSSSCCCHHHHHHHHHHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTS---SS
T ss_pred             HHHHcCC-CcCccHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcC---ch
Confidence            9999999 699999999999                   999999999999999999999999999999999999   99


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhhC
Q 036967           62 AMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN  106 (106)
Q Consensus        62 ~~~~lp~~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~~  106 (106)
                      ++++||+|||+||.+|++++|||++++.+.+|+++++|++++|++
T Consensus       564 ~~~~Lpeymk~~f~aL~~~~nei~~~~~~~~g~~~~~ylk~aw~~  608 (785)
T 3s9v_A          564 LVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKV  608 (785)
T ss_dssp             SGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             hhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence            999999999999999999999999998875566999999999973

>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*

Probab=100.00  E-value=5e-35  Score=249.83  Aligned_cols=102  Identities=31%  Similarity=0.660  Sum_probs=98.7

Q ss_pred             CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhcccc
Q 036967            1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIG   61 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~   61 (106)
                      |||++|+ .+|||||||+||                   ++||+++|+|++||+||+|||+|||++||+||+|||   ++
T Consensus       516 Wwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD---~~  591 (817)
T 3sdr_A          516 WFRDSGL-PLFTFARERPLEFYFLVAAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWD---LS  591 (817)
T ss_dssp             HHHHSSG-GGCTTSCCCHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTC---GG
T ss_pred             eHHhcCC-CcCccHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcC---ch
Confidence            9999999 699999999999                   999999999999999999999999999999999999   99


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhhC
Q 036967           62 AMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN  106 (106)
Q Consensus        62 ~~~~lp~~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~~  106 (106)
                      ++++||+|||+||.+|++++|||++++.++||+++++|++++|++
T Consensus       592 ~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~aw~~  636 (817)
T 3sdr_A          592 FTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWED  636 (817)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             hhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence            999999999999999999999999998888888999999999973

>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*

Probab=100.00  E-value=1.9e-34  Score=244.88  Aligned_cols=102  Identities=25%  Similarity=0.510  Sum_probs=97.4

Q ss_pred             CCccCCCCCCCCchhHHHHH-----------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhcccccc
Q 036967            1 WWKDLDFSTKLPYARDRIVD-----------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAM   63 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve-----------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~~~   63 (106)
                      |||++|+ .+|||||||+||                 ++||+++++|++||+||+|||+|||++||+||+|||   ++++
T Consensus       459 Wwk~~~l-~~l~faRdr~ve~Yfw~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD---~~~~  534 (764)
T 3p5p_A          459 WWKESGM-ADINFTRHRVAEVYFSSATFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWD---TSLL  534 (764)
T ss_dssp             HHHHTST-TTTTCCHHHHHHHHHHTCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTS---STTG
T ss_pred             eHHhcCC-CcCccHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcC---chhh
Confidence            9999999 699999999999                 899999999999999999999999999999999999   9999


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhhC
Q 036967           64 DKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN  106 (106)
Q Consensus        64 ~~lp~~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~~  106 (106)
                      ++||+|||+||.+|++++|||++++.+.+|+++++|++++|++
T Consensus       535 ~~LPeymk~~f~aL~~~~~ei~~~~~~~~g~~~~~yl~~aw~~  577 (764)
T 3p5p_A          535 HEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWEL  577 (764)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence            9999999999999999999999998775566999999999973

>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}

Probab=99.97  E-value=2.8e-32  Score=225.53  Aligned_cols=102  Identities=39%  Similarity=0.700  Sum_probs=97.6

Q ss_pred             CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhcccc
Q 036967            1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIG   61 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~   61 (106)
                      ||+++||+++|||||||+||                   ++||++++++++||+||+|||+|||+.||+||+|||   ++
T Consensus       272 Wwke~~L~~kl~faRdR~ve~Yfw~~a~~feP~~S~~Rl~~aK~~~litviDD~fD~ygT~eEl~~ft~ai~rWD---~~  348 (569)
T 2j5c_A          272 WWNSTGLVHELPFVRDRIVECYYWTTGVVERRQHGYERIMLTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWD---IE  348 (569)
T ss_dssp             HHHHHTHHHHCC--CCCHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTS---SG
T ss_pred             HHHHcCCccccchHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcC---cc
Confidence            99999998889999999999                   999999999999999999999999999999999999   99


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhh
Q 036967           62 AMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVG  105 (106)
Q Consensus        62 ~~~~lp~~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~  105 (106)
                      ++++||+|||+||.+++++++||++++.+.||+++++|++++|+
T Consensus       349 ~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~  392 (569)
T 2j5c_A          349 SMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWV  392 (569)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence            99999999999999999999999999988888999999999997

>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*

Probab=99.97  E-value=2.6e-32  Score=224.58  Aligned_cols=102  Identities=35%  Similarity=0.730  Sum_probs=99.6

Q ss_pred             CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhcccc
Q 036967            1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIG   61 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~   61 (106)
                      ||+++||+++|||||||+||                   ++||++++++++||+||+|||++||+.||+||+|||   ++
T Consensus       245 Wwk~~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD---~~  321 (543)
T 2ong_A          245 WWRNTGFVEKLPFARDRLVECYFWNTGIIEPRQHASARIMMGKVNALITVIDDIYDVYGTLEELEQFTDLIRRWD---IN  321 (543)
T ss_dssp             HHHHHTHHHHSCSSCCCHHHHHHTHHHHTCSTTCHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTC---SS
T ss_pred             HHHHcCCcccccHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcC---cc
Confidence            99999998889999999999                   999999999999999999999999999999999999   99


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhh
Q 036967           62 AMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVG  105 (106)
Q Consensus        62 ~~~~lp~~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~  105 (106)
                      ++++||+|||+||.+++++++||++++.+.||+++++|++++|+
T Consensus       322 ~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~  365 (543)
T 2ong_A          322 SIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWV  365 (543)
T ss_dssp             TTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence            99999999999999999999999999988889999999999997

>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*

Probab=99.97  E-value=3.5e-32  Score=224.14  Aligned_cols=102  Identities=33%  Similarity=0.699  Sum_probs=99.4

Q ss_pred             CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhcccc
Q 036967            1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIG   61 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~   61 (106)
                      ||+++||+++|||||||+||                   ++||++++++++||+||+|||+||++.||+||+|||   ++
T Consensus       251 Wwke~~l~~kl~faRdR~ve~Yfw~~a~~feP~~s~~Rl~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~rWD---~~  327 (549)
T 1n1b_A          251 WWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWD---TE  327 (549)
T ss_dssp             HHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTC---SS
T ss_pred             HHHHhCCcccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcC---cc
Confidence            99999998889999999999                   999999999999999999999999999999999999   99


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhh
Q 036967           62 AMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVG  105 (106)
Q Consensus        62 ~~~~lp~~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~  105 (106)
                      ++++||+|||+||.+++++++||++++.+.||+++++|++++|+
T Consensus       328 ~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w~  371 (549)
T 1n1b_A          328 SITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVV  371 (549)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             ccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence            99999999999999999999999999988888999999999997

>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*

Probab=99.96  E-value=1.7e-30  Score=219.73  Aligned_cols=100  Identities=13%  Similarity=0.212  Sum_probs=88.8

Q ss_pred             CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhcccc
Q 036967            1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIG   61 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~   61 (106)
                      |||+++| .+|||||||+||                   ++||+++|+|++||+||+||  |||++||+||+|||   ++
T Consensus       463 Wwk~~~l-~~l~faRdr~ve~Yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd---~~  536 (727)
T 3pya_A          463 WYEENRL-SEWGVRRSELLECYYLAAATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYI---AN  536 (727)
T ss_dssp             HHHHTTG-GGGTCCHHHHHHHHHHHHTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC-----
T ss_pred             eHHhcCc-ccCCchhhHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhcc---cc
Confidence            9999999 569999999999                   99999999999999999999  99999999999999   74


Q ss_pred             ---------cccc---CCHH--HHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhhC
Q 036967           62 ---------AMDK---LPEY--MKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN  106 (106)
Q Consensus        62 ---------~~~~---lp~~--mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~~  106 (106)
                               +++.   +|+|  ||+||.+|++|+|||+.++.++||+++++|++++|++
T Consensus       537 ~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~  595 (727)
T 3pya_A          537 ARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGD  595 (727)
T ss_dssp             -----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             cccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence                     4333   3887  9999999999999999998888888999999999963

>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A

Probab=99.72  E-value=3.7e-18  Score=130.54  Aligned_cols=94  Identities=18%  Similarity=0.207  Sum_probs=81.5

Q ss_pred             CCccCCCCCCCCchhHHHHH--------------------HHHHHHHHHHhhccccccc--CCHHHHHHHHHHHhhhhhc
Q 036967            1 WWKDLDFSTKLPYARDRIVD--------------------QMTKLIYMTSIIDDTFDAY--GIFEELKLFTEAVQRFKIF   58 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve--------------------~~tK~~~l~tilDD~yD~y--gt~eEl~~ft~aveRWd~~   58 (106)
                      ||+++|+.+ +||+|+|+++                    ++||.+.+++++||+||.|  ||++|++.|+++++||+  
T Consensus        29 W~~~~~l~~-~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~ee~~~~~~~l~~~~--  105 (337)
T 1ps1_A           29 WPRSLGLIR-SDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPEDTKQLTDQVAAAL--  105 (337)
T ss_dssp             HHHHTTSCC-SHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHHHHHHHHHHHGGG--
T ss_pred             HHHHcCCCC-CHHHHHHHHhCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHHHHHHHHHHHHHHc--
Confidence            999999964 6999999999                    7999999999999999999  69999999999999998  


Q ss_pred             cccccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhh
Q 036967           59 YIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVG  105 (106)
Q Consensus        59 ~~~~~~~lp~~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~  105 (106)
                       .+   .+|++++.+|++++++++++++...+    ...+++++.|+
T Consensus       106 -~~---~~p~~~~~~~~~l~d~~~~~~~~~~~----~~~~~~~~~~~  144 (337)
T 1ps1_A          106 -DG---PLPDTAPPIAHGFADIWRRTCEGMTP----AWCARSARHWR  144 (337)
T ss_dssp             -TS---CCCTTSCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHH
T ss_pred             -CC---CCCCCCChHHHHHHHHHHHHhccCCH----HHHHHHHHHHH
Confidence             64   58999999999999999999877432    33456666554

>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A

Probab=99.71  E-value=6.3e-18  Score=127.01  Aligned_cols=82  Identities=18%  Similarity=0.173  Sum_probs=76.0

Q ss_pred             CCccCCCCCCCCchhHHHHH--------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhccc
Q 036967            1 WWKDLDFSTKLPYARDRIVD--------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYI   60 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve--------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~   60 (106)
                      ||+++|+. ++||+|+|+++                    ++||.+.+++++||+||. ||++|++.|+++++||+   .
T Consensus        25 W~~~~~l~-~~~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~~~~~~~~~~---~   99 (300)
T 1di1_A           25 YFLENWKF-PSFKAVRTFLDAKFSEVTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEAYNNRLIPIS---R   99 (300)
T ss_dssp             HHHHHSCC-SSHHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH---H
T ss_pred             HHHHcCCC-CCHHHHHHHHhcCcchhhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHHHHHHHHHHc---c
Confidence            78999996 57999999999                    799999999999999999 89999999999999998   6


Q ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHHH
Q 036967           61 GAMDKLPEYMKILYKALLDTYNEIEQVLA   89 (106)
Q Consensus        61 ~~~~~lp~~mki~f~~l~~t~~ei~~~~~   89 (106)
                      +  +.+|++|+.+|++++++++++++.+.
T Consensus       100 ~--~~lp~~~~~~~~~l~d~~~~~~~~~~  126 (300)
T 1di1_A          100 G--DVLPDRTKPEEFILYDLWESMRAHDA  126 (300)
T ss_dssp             T--SSCCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             C--CCCCCCccHHHHHHHHHHHHHHhhCh
Confidence            5  57899999999999999999988763

>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*

Probab=99.69  E-value=1.2e-17  Score=126.96  Aligned_cols=81  Identities=20%  Similarity=0.229  Sum_probs=75.1

Q ss_pred             CCccCCCCCCCCchhHHHHH--------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhccc
Q 036967            1 WWKDLDFSTKLPYARDRIVD--------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYI   60 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve--------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~   60 (106)
                      ||+++|+..+ ||+|+|+++                    ++||.+.+++++||+||. ||++|++.|+++++||+   .
T Consensus        39 W~~~~~l~~~-~~~r~r~~~~~~~~~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e~~~~~~~l~~~~---~  113 (320)
T 3bny_A           39 YFLQHWNFPN-EKARKKFVAAGFSRVTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEEGSAYNEKLIPIS---R  113 (320)
T ss_dssp             HHHHHSCCSS-HHHHHHHHHHCHHHHHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHHH---H
T ss_pred             HHHHcCCCCC-hHHHHHHHhcCchhhHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhhHHHHHHHHHHHh---c
Confidence            7899999765 999999999                    789999999999999999 99999999999999998   6


Q ss_pred             cccccCCHHHHHHHHHHHHHHHHHHHHH
Q 036967           61 GAMDKLPEYMKILYKALLDTYNEIEQVL   88 (106)
Q Consensus        61 ~~~~~lp~~mki~f~~l~~t~~ei~~~~   88 (106)
                      +  +.+|++|+.+|.+++++++++++..
T Consensus       114 ~--~~~p~~~~~~~~al~d~~~e~~~~~  139 (320)
T 3bny_A          114 G--DVLPDRSIPVEYIIYDLWESMRAHD  139 (320)
T ss_dssp             T--SSCCCTTSHHHHHHHHHHHHHHHHH
T ss_pred             C--CCCCCCcCHHHHHHHHHHHHHHhhC
Confidence            5  5789999999999999999998765

>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*

Probab=99.09  E-value=1.2e-11  Score=97.08  Aligned_cols=96  Identities=7%  Similarity=0.008  Sum_probs=77.0

Q ss_pred             CCccCCCCCCCCchhHHHHH--------------------HHHHHHHHHHhhcccccc--cC-CHHHHHHHHHHHhhhhh
Q 036967            1 WWKDLDFSTKLPYARDRIVD--------------------QMTKLIYMTSIIDDTFDA--YG-IFEELKLFTEAVQRFKI   57 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve--------------------~~tK~~~l~tilDD~yD~--yg-t~eEl~~ft~aveRWd~   57 (106)
                      ||+++|+. .-+++|+|+++                    ++||.+.+++++||+||.  || +++|++.|+++++++- 
T Consensus        69 W~~~~gl~-~~~~~r~r~~~~~~~~laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~~~l-  146 (382)
T 3kb9_A           69 WLLEKRLM-PADKVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTAL-  146 (382)
T ss_dssp             HHHHTTSS-CHHHHHHHHHHHCHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-
T ss_pred             HHHHcCCC-CCHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHHh-
Confidence            88888884 44789999998                    899999999999999998  77 9999999999999852 


Q ss_pred             ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhh
Q 036967           58 FYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVG  105 (106)
Q Consensus        58 ~~~~~~~~lp~~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~  105 (106)
                         +.-..+|++++.+++++.+++++++..+.+.    ...++++.|+
T Consensus       147 ---~~~~~~p~~~~p~~~al~dl~~~~~~~~~~~----~~~r~~~~~~  187 (382)
T 3kb9_A          147 ---DSPGDHLHHEDTLVAGFADSVRRLYAFLPAT----WNARFARHFH  187 (382)
T ss_dssp             ---HSCGGGTTCSSHHHHHHHHHHHHHTTSSCHH----HHHHHHHHHH
T ss_pred             ---cCCCCCCCCCChHHHHHHHHHHHHHccCCHH----HHHHHHHHHH
Confidence               1223368999999999999999998764433    2455555554

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*

Probab=80.19  E-value=6.7  Score=31.05  Aligned_cols=28  Identities=29%  Similarity=0.483  Sum_probs=21.9

Q ss_pred             Cch--hHHHHHHHHHHHHHHHhhccc-ccccC
Q 036967           12 PYA--RDRIVDQMTKLIYMTSIIDDT-FDAYG   40 (106)
Q Consensus        12 ~f~--Rdr~ve~~tK~~~l~tilDD~-yD~yg   40 (106)
                      |.|  .+++. +.++......++||. +|..|
T Consensus       168 P~A~~~e~L~-l~ad~~~W~F~~DD~~~D~~g  198 (433)
T 3v1v_A          168 PDAPTVDHLM-LATRLMVAENAVDDCYCEDHG  198 (433)
T ss_dssp             TTCSSHHHHH-HHHHHHHHHHHHHHHHTC---
T ss_pred             CCCCCHHHHH-HHHHHHHHHHHHhhhhhhccC
Confidence            666  67776 999999999999999 59866

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	106
d1n1ba2	328	a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth	1e-30
d5easa2	328	a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase	2e-30
d1ps1a_	311	a.128.1.4 (A:) Pentalenene synthase {Streptomyces	8e-09
d1di1a_	300	a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen	2e-05

>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  108 bits (272), Expect = 1e-30
 Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 22/121 (18%)

Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WW  L F  KLP+ RDR+V+                       +I + ++IDD +D YG 
Sbjct: 30  WWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGT 89

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            +EL+LFT+  +R+      ++ +LP YM++ Y  + +  ++    + KE     L+Y +
Sbjct: 90  LDELELFTDTFKRWDT---ESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLR 146

Query: 102 E 102
           +
Sbjct: 147 K 147

>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  107 bits (269), Expect = 2e-30
 Identities = 55/121 (45%), Positives = 74/121 (61%), Gaps = 22/121 (18%)

Query: 1   WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGI 41
           WWKDLDF T LPYARDR+V+                    + K I M SI+DDTFDAYG 
Sbjct: 30  WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGT 89

Query: 42  FEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDK 101
            +EL+ +T+A+QR+ I     +D+LP+YMKI YKA+LD Y + E+ L+  GRS  + +  
Sbjct: 90  VKELEAYTDAIQRWDI---NEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAI 146

Query: 102 E 102
           E
Sbjct: 147 E 147

>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Aristolochene/pentalenene synthase
domain: Pentalenene synthase
species: Streptomyces sp., UC5319 [TaxId: 1931]

 Score = 49.0 bits (116), Expect = 8e-09
 Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 4/87 (4%)

Query: 12  PYARDRIVDQMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMK 71
           P+A    +D    L+    + DD FD     E  +   +   +      G    LP+   
Sbjct: 57  PHATGADLDLGVDLMSWFFLFDDLFDGPR-GENPEDTKQLTDQVAAALDGP---LPDTAP 112

Query: 72  ILYKALLDTYNEIEQVLAKEGRSSYLR 98
            +     D +    + +     +   R
Sbjct: 113 PIAHGFADIWRRTCEGMTPAWCARSAR 139

>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Aristolochene/pentalenene synthase
domain: Aristolochene synthase
species: Fungus (Penicillium roqueforti) [TaxId: 5082]

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 6/75 (8%)

Query: 12  PYARDRIVDQMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMK 71
           P A D  +    +L+ +  +IDD  + +  F + + +   +           D LP+  K
Sbjct: 55  PLALDDRIHFACRLLTVLFLIDDVLE-HMSFADGEAYNNRLIPISRG-----DVLPDRTK 108

Query: 72  ILYKALLDTYNEIEQ 86
                L D +  +  
Sbjct: 109 PEEFILYDLWESMRA 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d1n1ba2	328	(+)-bornyl diphosphate synthase {Garden sage (Salv	100.0
d5easa2	328	5-Epi-aristolochene synthase {Tobacco (Nicotiana t	100.0
d1ps1a_	311	Pentalenene synthase {Streptomyces sp., UC5319 [Ta	98.07
d1di1a_	300	Aristolochene synthase {Fungus (Penicillium roquef	95.22

>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]}

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=3.4e-38  Score=244.69  Aligned_cols=103  Identities=33%  Similarity=0.699  Sum_probs=100.4

Q ss_pred             CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhcccc
Q 036967            1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIG   61 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~   61 (106)
                      |||+++|+++|||||||+||                   ++||+++|+|++||+||+|||+|||++||+||+|||   ++
T Consensus        30 Wwk~~~l~~~l~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~l~~iiDD~yD~ygt~eEl~~ft~ai~rWd---~~  106 (328)
T d1n1ba2          30 WWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWD---TE  106 (328)
T ss_dssp             HHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTC---SS
T ss_pred             HHHHhCCcccCCchHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhhhHHhcccCCHHHHHHHHHHHHhcC---Cc
Confidence            99999998899999999999                   999999999999999999999999999999999999   99


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhhC
Q 036967           62 AMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN  106 (106)
Q Consensus        62 ~~~~lp~~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~~  106 (106)
                      ++++||+|||+||.+++++++|+++++.++||+++++|++++|++
T Consensus       107 ~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~g~~~~~~lk~~w~~  151 (328)
T d1n1ba2         107 SITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVD  151 (328)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             ccccCcchHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence            999999999999999999999999998889999999999999973

>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=4.4e-38  Score=243.81  Aligned_cols=103  Identities=53%  Similarity=0.961  Sum_probs=100.8

Q ss_pred             CCccCCCCCCCCchhHHHHH-------------------HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhcccc
Q 036967            1 WWKDLDFSTKLPYARDRIVD-------------------QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIG   61 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve-------------------~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~   61 (106)
                      ||+++|+.++|||||||+||                   ++||+++|+|++||+||+|||+|||+.||+||+|||   ++
T Consensus        30 Ww~~~~l~~~l~~aRdr~ve~Yfw~~~~~fEP~~s~~R~~~aK~~~l~ti~DD~yD~ygt~eEl~~ft~ai~rWd---~~  106 (328)
T d5easa2          30 WWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWD---IN  106 (328)
T ss_dssp             HHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTC---SG
T ss_pred             HHHhhCCcccCCchHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhhhhhcccCCCHHHHHHHHHHHhcCC---cc
Confidence            99999998899999999999                   999999999999999999999999999999999999   99


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHhhC
Q 036967           62 AMDKLPEYMKILYKALLDTYNEIEQVLAKEGRSSYLRYDKEKVGN  106 (106)
Q Consensus        62 ~~~~lp~~mki~f~~l~~t~~ei~~~~~~~~~~~~~~~~~~~~~~  106 (106)
                      ++++||+|||++|++++++++||++++.++||+++++|++++|++
T Consensus       107 ~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~  151 (328)
T d5easa2         107 EIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKE  151 (328)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHH
T ss_pred             hhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999973

>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]}

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Aristolochene/pentalenene synthase
domain: Pentalenene synthase
species: Streptomyces sp., UC5319 [TaxId: 1931]

Probab=98.07  E-value=4.8e-07  Score=65.95  Aligned_cols=80  Identities=20%  Similarity=0.213  Sum_probs=59.9

Q ss_pred             CCccCCCCCCCCchhHHHHH--------------------HHHHHHHHHHhhcccccccCC--HHHHHHHHHHHhhhhhc
Q 036967            1 WWKDLDFSTKLPYARDRIVD--------------------QMTKLIYMTSIIDDTFDAYGI--FEELKLFTEAVQRFKIF   58 (106)
Q Consensus         1 Wwk~~~l~~~l~f~Rdr~ve--------------------~~tK~~~l~tilDD~yD~ygt--~eEl~~ft~aveRWd~~   58 (106)
                      |.++.|+. .-|++|+|+++                    ++|+.+.+++++||+||.+++  .+++..+.+.+.++.  
T Consensus        27 W~~~~~l~-~~~~~~~~~~~~~~~~~~a~~~P~~~~~rl~l~~~~~~~~f~~DD~~D~~~~~~~~~~~~~~~~~~~~~--  103 (311)
T d1ps1a_          27 WPRSLGLI-RSDAAAERHLRGGYADLASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPEDTKQLTDQVAAAL--  103 (311)
T ss_dssp             HHHHTTSC-CSHHHHHHHHTTCHHHHHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHHHHHHHHHHHHGGG--
T ss_pred             HHHHcCCC-CChHHHHHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccccCccccCHHHHHHHHHHHHHhh--
Confidence            44567773 44788888876                    889999999999999998764  566666666666654  


Q ss_pred             cccccccCCHHHHHHHHHHHHHHHHHHHH
Q 036967           59 YIGAMDKLPEYMKILYKALLDTYNEIEQV   87 (106)
Q Consensus        59 ~~~~~~~lp~~mki~f~~l~~t~~ei~~~   87 (106)
                       .   +..|++.+.++.++.+..+++.+.
T Consensus       104 -~---~~~~~~~~~~~~~l~d~~~~~~~~  128 (311)
T d1ps1a_         104 -D---GPLPDTAPPIAHGFADIWRRTCEG  128 (311)
T ss_dssp             -T---SCCCTTSCHHHHHHHHHHHHHHTT
T ss_pred             -c---cCCCcccCHHHHHHHHHHHHHHHh
Confidence             3   456778888888888888877654

>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]}

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Aristolochene/pentalenene synthase
domain: Aristolochene synthase
species: Fungus (Penicillium roqueforti) [TaxId: 5082]

Probab=95.22  E-value=0.017  Score=40.97  Aligned_cols=59  Identities=19%  Similarity=0.291  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHhhcccccccCCHHHHHHHHHHHhhhhhccccccccCCHHHHHHHHHHHHHHHHHH
Q 036967           21 QMTKLIYMTSIIDDTFDAYGIFEELKLFTEAVQRFKIFYIGAMDKLPEYMKILYKALLDTYNEIE   85 (106)
Q Consensus        21 ~~tK~~~l~tilDD~yD~ygt~eEl~~ft~aveRWd~~~~~~~~~lp~~mki~f~~l~~t~~ei~   85 (106)
                      +.++.+..+.++||.||. |+.++...+...+.++.   .+..  +|.....+...+.+...++.
T Consensus        64 l~a~~~~w~f~~DD~~d~-~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~l~d~~~~~~  122 (300)
T d1di1a_          64 FACRLLTVLFLIDDVLEH-MSFADGEAYNNRLIPIS---RGDV--LPDRTKPEEFILYDLWESMR  122 (300)
T ss_dssp             HHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH---HTSS--CCCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcc-CChhhHHHHHHHHHHHh---cCCC--CCCCcCHHHHHHHHHHHHHH
Confidence            789999999999999995 68889989998888866   4322  34444455555555555553