Citrus Sinensis ID: 036994


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
MAIPSLGASRDKSEKRKEMKGLRFIVAMSLFCTCQAISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDSEGWFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHNSPGVETRVPHF
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccccEEEEccccccccccccccccccccccccEEEEccccccccccccccccccEEEEccccccccccccEEEEcccc
ccccccccccccccccHHHHHHHHHHHHHHHccccccccccccEEEEcccccccEEEEcccccccccccccEEEEccccccccEEEEEcHHHHcHcHHHHHHHcEEEEEccccccccccccEEEEcccc
maipslgasrdkseKRKEMKGLRFIVAMSLFCTCQaisrglhplilvpgnggnqlearltsdykpssllcnrwypivkdsegwfrlwfdpsvllppftkcfadrmmlyydpdlddfhnspgvetrvphf
maipslgasrdksekrkEMKGLRFIVAMSLFCTCQAISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDSEGWFRLWFDPSVLLPPFTKCFADRMMLYYDPDLddfhnspgvetrvphf
MAIPSLGASRDKSEKRKEMKGLRFIVAMSLFCTCQAISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDSEGWFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHNSPGVETRVPHF
********************GLRFIVAMSLFCTCQAISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDSEGWFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDD**************
********************GLRFIVAMSLFCTCQAISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDSEGWFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHNSPGVETRVPHF
*****************EMKGLRFIVAMSLFCTCQAISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDSEGWFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHNSPG********
*************EKRKEMKGLRFIVAMSLFCTCQAISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDSEGWFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHNSPGVETRVPHF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAIPSLGASRDKSEKRKEMKGLRFIVAMSLFCTCQAISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRWYPIVKDSEGWFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHNSPGVETRVPHF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query129 2.2.26 [Sep-21-2011]
Q9FZI8 432 Lecithin-cholesterol acyl yes no 0.837 0.25 0.651 2e-40
P18424 440 Phosphatidylcholine-stero yes no 0.651 0.190 0.368 1e-07
P04180 440 Phosphatidylcholine-stero yes no 0.651 0.190 0.368 2e-07
Q8NCC3 412 Group XV phospholipase A2 no no 0.604 0.189 0.370 2e-07
Q08758 440 Phosphatidylcholine-stero N/A no 0.651 0.190 0.368 2e-07
P16301 438 Phosphatidylcholine-stero yes no 0.651 0.191 0.357 3e-07
P53761 440 Phosphatidylcholine-stero yes no 0.651 0.190 0.378 4e-07
P53760 413 Phosphatidylcholine-stero no no 0.604 0.188 0.359 1e-06
>sp|Q9FZI8|LCAT1_ARATH Lecithin-cholesterol acyltransferase-like 1 OS=Arabidopsis thaliana GN=LCAT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 71/109 (65%), Positives = 88/109 (80%), Gaps = 1/109 (0%)

Query: 22  LRFIVAMSLFCTCQAISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRW-YPIVKDS 80
           +  +V +++   CQA+   ++PLILVPGNGGNQLE RL  +YKPSS+ C+ W YPI K S
Sbjct: 12  IAILVVVTMTSMCQAVGSNVYPLILVPGNGGNQLEVRLDREYKPSSVWCSSWLYPIHKKS 71

Query: 81  EGWFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHNSPGVETRVPHF 129
            GWFRLWFD +VLL PFT+CF+DRMMLYYDPDLDD+ N+PGV+TRVPHF
Sbjct: 72  GGWFRLWFDAAVLLSPFTRCFSDRMMLYYDPDLDDYQNAPGVQTRVPHF 120





Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: -
>sp|P18424|LCAT_RAT Phosphatidylcholine-sterol acyltransferase OS=Rattus norvegicus GN=Lcat PE=1 SV=1 Back     alignment and function description
>sp|P04180|LCAT_HUMAN Phosphatidylcholine-sterol acyltransferase OS=Homo sapiens GN=LCAT PE=1 SV=1 Back     alignment and function description
>sp|Q8NCC3|PAG15_HUMAN Group XV phospholipase A2 OS=Homo sapiens GN=PLA2G15 PE=1 SV=2 Back     alignment and function description
>sp|Q08758|LCAT_PAPAN Phosphatidylcholine-sterol acyltransferase OS=Papio anubis GN=LCAT PE=2 SV=1 Back     alignment and function description
>sp|P16301|LCAT_MOUSE Phosphatidylcholine-sterol acyltransferase OS=Mus musculus GN=Lcat PE=1 SV=2 Back     alignment and function description
>sp|P53761|LCAT_RABIT Phosphatidylcholine-sterol acyltransferase OS=Oryctolagus cuniculus GN=LCAT PE=2 SV=1 Back     alignment and function description
>sp|P53760|LCAT_CHICK Phosphatidylcholine-sterol acyltransferase (Fragment) OS=Gallus gallus GN=LCAT PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query129
147780451 919 hypothetical protein VITISV_035399 [Viti 0.899 0.126 0.677 1e-39
225458888 426 PREDICTED: lecithin-cholesterol acyltran 0.852 0.258 0.704 2e-39
302142173 514 unnamed protein product [Vitis vinifera] 0.860 0.215 0.689 1e-38
18396359 432 Lecithin-cholesterol acyltransferase-lik 0.837 0.25 0.651 1e-38
225458886 431 PREDICTED: lecithin-cholesterol acyltran 0.852 0.255 0.686 4e-38
255538016 429 1-O-acylceramide synthase precursor, put 0.852 0.256 0.666 5e-38
118487414 426 unknown [Populus trichocarpa] 0.844 0.255 0.695 1e-37
224129828 433 predicted protein [Populus trichocarpa] 0.844 0.251 0.686 5e-37
297845698 432 lecithin:cholesterol acyltransferase fam 0.821 0.245 0.654 7e-37
356514509 443 PREDICTED: lecithin-cholesterol acyltran 0.744 0.216 0.673 3e-35
>gi|147780451|emb|CAN70371.1| hypothetical protein VITISV_035399 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/121 (67%), Positives = 95/121 (78%), Gaps = 5/121 (4%)

Query: 13  SEKRKEMKGLRFIVAMS----LFCTCQAISRGLHPLILVPGNGGNQLEARLTSDYKPSSL 68
           S +  +MKGL  I AM     ++ TCQA S  LHPLILVPG+GGNQLEARLT  YKPSSL
Sbjct: 478 SLQNPKMKGLGLIFAMVSMAVMWYTCQA-SSNLHPLILVPGSGGNQLEARLTDGYKPSSL 536

Query: 69  LCNRWYPIVKDSEGWFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHNSPGVETRVPH 128
           LC+R YP +KD EGWFRLWFDP+ ++ PFT+CFA RMMLYYDP LDD+ N+PGVETRVP 
Sbjct: 537 LCSRLYPPLKDKEGWFRLWFDPAQVVGPFTQCFAQRMMLYYDPQLDDYVNTPGVETRVPS 596

Query: 129 F 129
           F
Sbjct: 597 F 597




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458888|ref|XP_002285416.1| PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302142173|emb|CBI19376.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|18396359|ref|NP_564286.1| Lecithin-cholesterol acyltransferase-like 1 [Arabidopsis thaliana] gi|75173439|sp|Q9FZI8.1|LCAT1_ARATH RecName: Full=Lecithin-cholesterol acyltransferase-like 1 gi|9802537|gb|AAF99739.1|AC004557_18 F17L21.27 [Arabidopsis thaliana] gi|13605855|gb|AAK32913.1|AF367326_1 At1g27480/F17L21_28 [Arabidopsis thaliana] gi|21593031|gb|AAM64980.1| unknown [Arabidopsis thaliana] gi|22137198|gb|AAM91444.1| At1g27480/F17L21_28 [Arabidopsis thaliana] gi|33339740|gb|AAQ14348.1| lecithin cholesterol acyltransferase [Arabidopsis thaliana] gi|39777538|gb|AAR31109.1| lecithine cholesterol acyltransferase-like protein [Arabidopsis thaliana] gi|332192716|gb|AEE30837.1| Lecithin-cholesterol acyltransferase-like 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225458886|ref|XP_002283444.1| PREDICTED: lecithin-cholesterol acyltransferase-like 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255538016|ref|XP_002510073.1| 1-O-acylceramide synthase precursor, putative [Ricinus communis] gi|223550774|gb|EEF52260.1| 1-O-acylceramide synthase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|118487414|gb|ABK95535.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224129828|ref|XP_002320681.1| predicted protein [Populus trichocarpa] gi|222861454|gb|EEE98996.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297845698|ref|XP_002890730.1| lecithin:cholesterol acyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297336572|gb|EFH66989.1| lecithin:cholesterol acyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356514509|ref|XP_003525948.1| PREDICTED: lecithin-cholesterol acyltransferase-like 1-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query129
TAIR|locus:2015924 432 AT1G27480 "AT1G27480" [Arabido 0.837 0.25 0.651 2.1e-38
FB|FBgn0042175 421 CG18858 [Drosophila melanogast 0.612 0.187 0.436 2e-13
FB|FBgn0051683 421 CG31683 [Drosophila melanogast 0.612 0.187 0.436 2e-13
ZFIN|ZDB-GENE-010716-3 425 lcat "lecithin-cholesterol acy 0.682 0.207 0.378 3.1e-11
UNIPROTKB|B4DJW4 236 PLA2G15 "Group XV phospholipas 0.790 0.432 0.345 9.4e-11
UNIPROTKB|H3BM47163 PLA2G15 "Group XV phospholipas 0.790 0.625 0.345 9.4e-11
UNIPROTKB|H3BMU8 298 PLA2G15 "Group XV phospholipas 0.790 0.342 0.345 2.6e-10
UNIPROTKB|Q8NCC3 412 PLA2G15 "Group XV phospholipas 0.790 0.247 0.345 5.9e-10
WB|WBGene00010872 417 M05B5.4 [Caenorhabditis elegan 0.658 0.203 0.391 2.1e-09
UNIPROTKB|Q2KIW4 440 LCAT "Uncharacterized protein" 0.666 0.195 0.376 3.8e-09
TAIR|locus:2015924 AT1G27480 "AT1G27480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 71/109 (65%), Positives = 88/109 (80%)

Query:    22 LRFIVAMSLFCTCQAISRGLHPLILVPGNGGNQLEARLTSDYKPSSLLCNRW-YPIVKDS 80
             +  +V +++   CQA+   ++PLILVPGNGGNQLE RL  +YKPSS+ C+ W YPI K S
Sbjct:    12 IAILVVVTMTSMCQAVGSNVYPLILVPGNGGNQLEVRLDREYKPSSVWCSSWLYPIHKKS 71

Query:    81 EGWFRLWFDPSVLLPPFTKCFADRMMLYYDPDLDDFHNSPGVETRVPHF 129
              GWFRLWFD +VLL PFT+CF+DRMMLYYDPDLDD+ N+PGV+TRVPHF
Sbjct:    72 GGWFRLWFDAAVLLSPFTRCFSDRMMLYYDPDLDDYQNAPGVQTRVPHF 120




GO:0004607 "phosphatidylcholine-sterol O-acyltransferase activity" evidence=ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0006629 "lipid metabolic process" evidence=IEA;ISS
GO:0008374 "O-acyltransferase activity" evidence=IEA
GO:0005773 "vacuole" evidence=IDA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0016556 "mRNA modification" evidence=RCA
GO:0030003 "cellular cation homeostasis" evidence=RCA
GO:0070838 "divalent metal ion transport" evidence=RCA
FB|FBgn0042175 CG18858 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0051683 CG31683 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-010716-3 lcat "lecithin-cholesterol acyltransferase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B4DJW4 PLA2G15 "Group XV phospholipase A2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H3BM47 PLA2G15 "Group XV phospholipase A2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|H3BMU8 PLA2G15 "Group XV phospholipase A2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q8NCC3 PLA2G15 "Group XV phospholipase A2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00010872 M05B5.4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KIW4 LCAT "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 129
KOG2369 473 consensus Lecithin:cholesterol acyltransferase (LC 99.6
PLN02733 440 phosphatidylcholine-sterol O-acyltransferase 99.56
PF02450 389 LCAT: Lecithin:cholesterol acyltransferase; InterP 99.22
PLN02517 642 phosphatidylcholine-sterol O-acyltransferase 99.06
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism] Back     alignment and domain information
Probab=99.60  E-value=1.1e-15  Score=134.10  Aligned_cols=79  Identities=46%  Similarity=0.869  Sum_probs=71.2

Q ss_pred             cccEEEecCCCCCccEEEeCCCCCCCc---cccccccccccCCCCcee--eecccCCCCCCCcCccccceeEEEcCCCCC
Q 036994           41 LHPLILVPGNGGNQLEARLTSDYKPSS---LLCNRWYPIVKDSEGWFR--LWFDPSVLLPPFTKCFADRMMLYYDPDLDD  115 (129)
Q Consensus        41 ~~PVILVPG~gGSqLeAkL~~~~~p~~---~~C~~~yc~~k~~~~wFr--LWln~~~liP~~~~C~~D~m~L~YD~~T~~  115 (129)
                      ..||+||||++|+||+++++.  +|.+   |.|.      +.++++||  ||.+...+++...+||.|++.|+||++|+.
T Consensus        30 ~~pv~lv~g~gg~~l~~v~~~--~p~vv~~W~~~------~~a~~~FrkrLW~~~~~l~~~~~~cw~~~~~lvld~~tGL  101 (473)
T KOG2369|consen   30 DRPVLLVPGDGGSQLHPVLDG--KPGVVRLWVCI------KCAEGYFRKRLWLDLNMLLPKTIDCWCDNEHLVLDPETGL  101 (473)
T ss_pred             CCceEEecCCccccccceecC--CCCEEEEEEee------cCchHHHhHHHhhhccccccccccccccceEEeecCccCC
Confidence            349999999999999999995  3654   5565      56789999  999999999999999999999999999998


Q ss_pred             ccCCCCcEEeCCCC
Q 036994          116 FHNSPGVETRVPHF  129 (129)
Q Consensus       116 ~~N~pGV~Irvp~F  129 (129)
                      +  +|||.+|||||
T Consensus       102 d--~pg~~lRvpgf  113 (473)
T KOG2369|consen  102 D--PPGVKLRVPGF  113 (473)
T ss_pred             C--CCcceeecCCc
Confidence            7  99999999998



>PLN02733 phosphatidylcholine-sterol O-acyltransferase Back     alignment and domain information
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2 Back     alignment and domain information
>PLN02517 phosphatidylcholine-sterol O-acyltransferase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query129
d1pjaa_ 268 Palmitoyl protein thioesterase 2 {Human (Homo sapi 80.72
>d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: alpha/beta-Hydrolases
superfamily: alpha/beta-Hydrolases
family: Thioesterases
domain: Palmitoyl protein thioesterase 2
species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.72  E-value=0.4  Score=31.52  Aligned_cols=16  Identities=25%  Similarity=0.378  Sum_probs=13.3

Q ss_pred             CcccEEEecCCCCCcc
Q 036994           40 GLHPLILVPGNGGNQL   55 (129)
Q Consensus        40 ~~~PVILVPG~gGSqL   55 (129)
                      +.+|||||.|.++|..
T Consensus         1 ~~~PvvllHG~~~~~~   16 (268)
T d1pjaa_           1 SYKPVIVVHGLFDSSY   16 (268)
T ss_dssp             CCCCEEEECCTTCCGG
T ss_pred             CCCCEEEECCCCCCHH
Confidence            3689999999998874